Citrus Sinensis ID: 031970

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLNVFCGRNLVRFE
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEEEccccccHHHHHHHHcHHHHHHccccccEEEEEccccccccHHHHHHccccccccHHHHHHHHHHHcccEEEEcHHHccccHHHHHHHHHHHHccccccHHccccccccEEEccccccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccHHHcccHHHccccccEEEEEEEcccHHHHHHHHHcHHHHHHHHcccccEEEEEEcHHHcccHHHHHHHcccccccHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHcccccccccccccccEEEEEEEcccEEEEEc
Coil and Loop (DISEMBL)
mnvigqedynrlrplsyrgaDVFVLAFSLVSRASYENVLKKWIpelqhyspgvpvvlvgtkldlredkhyladhpglvpvttAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVvikppqkqkekkkkqrgcllnvfcgrnlvrfe
Flexible Loop (DISEMBL)
mnvigqedynrlrplsyRGADVFVLAFSLVSRASYENVLKKWIpelqhyspgVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVvikppqkqkekkkkqrgcllnvfcgrnlvrfe
Low Complexity Region (SEG)
MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAikvvikppqkqkekkkkQRGCLLNVFCGRNLVRFE
Disordered region (IsUnstruct)
********YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI**************GCLLNVFCGRNLV***
Disordered Region (DISOPRED)
MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY*A*******VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV*********************VFCGRNLVRFE
Disordered Region (DISEMBL)
MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP***********RGCLLNVFCGRNLVRFE
Disordered Region (DISPRO)
***IGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLNVFCGRNLVRFE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLNVFCGRNLVRFE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
Q6Z808	214	Rac-like GTP-binding prot	yes	no	0.993	0.696	0.802	2e-67
Q9SU67	208	Rac-like GTP-binding prot	yes	no	0.96	0.692	0.789	4e-64
O82481	215	Rac-like GTP-binding prot	no	no	0.98	0.683	0.790	2e-63
Q67VP4	215	Rac-like GTP-binding prot	no	no	0.94	0.655	0.829	2e-61
O04369	197	Rac-like GTP-binding prot	N/A	no	0.9	0.685	0.777	5e-58
Q6Z7L8	197	Rac-like GTP-binding prot	no	no	0.913	0.695	0.722	5e-58
Q68Y52	214	Rac-like GTP-binding prot	no	no	0.973	0.682	0.673	5e-57
Q6EP31	197	Rac-like GTP-binding prot	no	no	0.913	0.695	0.759	4e-55
P92978	197	Rac-like GTP-binding prot	no	no	0.793	0.604	0.815	4e-55
Q6ZHA3	197	Rac-like GTP-binding prot	no	no	0.793	0.604	0.815	4e-55

>sp|Q6Z808|RAC3_ORYSJ Rac-like GTP-binding protein 3 OS=Oryza sativa subsp. japonica GN=RAC3 PE=2 SV=1

 Score =  253 bits (647), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 122/152 (80%), Positives = 139/152 (91%), Gaps = 3/152 (1%)

Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN++KKWIPELQHY+PGVP+VLVGTK
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENIMKKWIPELQHYAPGVPIVLVGTK 121

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           LDLREDKHYL DHPG++PVTTAQGEELRKQIGA+YYIECSSKTQQNVK VFDAAIKVVI+
Sbjct: 122 LDLREDKHYLLDHPGMIPVTTAQGEELRKQIGAAYYIECSSKTQQNVKGVFDAAIKVVIQ 181

Query: 122 PPQKQKE--KKKKQRGC-LLNVFCGRNLVRFE 150
           PP KQ+E  KKK ++GC ++N+F GR +  F+
Sbjct: 182 PPTKQREKKKKKSRQGCSMMNMFRGRKMSCFK 213

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SU67|RAC8_ARATH Rac-like GTP-binding protein ARAC8 OS=Arabidopsis thaliana GN=ARAC8 PE=1 SV=2

 Score =  243 bits (619), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 116/147 (78%), Positives = 134/147 (91%), Gaps = 3/147 (2%)

Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDYNRLRPLSYRGADVFVLAFSL+SRASYENV KKWIPELQH++PGVP+VLVGTK
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVFKKWIPELQHFAPGVPIVLVGTK 121

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           +DLRED+HYL+DHPGL PVTT+QGEELRK IGA+YYIECSSKTQQNVKAVFDAAIKVVIK
Sbjct: 122 MDLREDRHYLSDHPGLSPVTTSQGEELRKHIGATYYIECSSKTQQNVKAVFDAAIKVVIK 181

Query: 122 PP---QKQKEKKKKQRGCLLNVFCGRN 145
           P    +++K+K+K + GCL N+ CG+N
Sbjct: 182 PAVKQKEKKKKQKPRSGCLSNILCGKN 208

Acts as a negative regulator of abscisic acid (ABA) responses.

Arabidopsis thaliana (taxid: 3702)

>sp|O82481|RAC10_ARATH Rac-like GTP-binding protein ARAC10 OS=Arabidopsis thaliana GN=ARAC10 PE=1 SV=1

 Score =  241 bits (614), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 121/153 (79%), Positives = 132/153 (86%), Gaps = 6/153 (3%)

Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDYNRLRPLSYRGADVFVL+FSLVSRASYENV KKWIPELQH++PGVP+VLVGTK
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFVLSFSLVSRASYENVFKKWIPELQHFAPGVPLVLVGTK 121

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           LDLREDKHYLADHPGL PVTTAQGEELRK IGA+YYIECSSKTQQNVKAVFD+AIK VIK
Sbjct: 122 LDLREDKHYLADHPGLSPVTTAQGEELRKLIGATYYIECSSKTQQNVKAVFDSAIKEVIK 181

Query: 122 P------PQKQKEKKKKQRGCLLNVFCGRNLVR 148
           P        K+K+K+K   GCL NV CGR + R
Sbjct: 182 PLVKQKEKTKKKKKQKSNHGCLSNVLCGRIVTR 214

Arabidopsis thaliana (taxid: 3702)

>sp|Q67VP4|RAC4_ORYSJ Rac-like GTP-binding protein 4 OS=Oryza sativa subsp. japonica GN=RAC4 PE=2 SV=1

 Score =  234 bits (596), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 117/141 (82%), Positives = 128/141 (90%)

Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV+KKW+PELQHY+PGVP+VLVGTK
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVMKKWLPELQHYAPGVPIVLVGTK 121

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           LDLREDKHYL DHP LVPVTTAQGEELRK IGA+ YIECSSKTQQNVKAVFDAAIKVVIK
Sbjct: 122 LDLREDKHYLLDHPSLVPVTTAQGEELRKHIGATCYIECSSKTQQNVKAVFDAAIKVVIK 181

Query: 122 PPQKQKEKKKKQRGCLLNVFC 142
           PP KQ+++KKK+     + FC
Sbjct: 182 PPTKQRDRKKKKTRRGCSFFC 202

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1

 Score =  223 bits (567), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 105/135 (77%), Positives = 126/135 (93%)

Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN+ KKWIPEL+HY+PGVP++LVGTK
Sbjct: 60  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTK 119

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           LDLR+DKH+LADHPG VP+TTAQGEELRK IGA  YIECSSKTQQNVKAVFDAAIKVV++
Sbjct: 120 LDLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQ 179

Query: 122 PPQKQKEKKKKQRGC 136
           PP+++K+K++ Q+ C
Sbjct: 180 PPKQKKKKREAQKSC 194

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Lotus japonicus (taxid: 34305)

>sp|Q6Z7L8|RAC7_ORYSJ Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1

 Score =  223 bits (567), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 99/137 (72%), Positives = 121/137 (88%)

Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN+ KKWIPEL+HY+P VP+VLVGTK
Sbjct: 60  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWIPELRHYAPNVPIVLVGTK 119

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           LDLREDK +  DHPGL P++TAQGEEL++ IGA+ YIECSSKTQQNVK+VFD+AIKVV+ 
Sbjct: 120 LDLREDKQFFLDHPGLAPISTAQGEELKRMIGAAAYIECSSKTQQNVKSVFDSAIKVVLC 179

Query: 122 PPQKQKEKKKKQRGCLL 138
           PP+ +K+  +KQR C +
Sbjct: 180 PPKPKKKNTRKQRSCWI 196

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q68Y52|RAC2_ORYSJ Rac-like GTP-binding protein 2 OS=Oryza sativa subsp. japonica GN=RAC2 PE=2 SV=1

 Score =  219 bits (558), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 103/153 (67%), Positives = 125/153 (81%), Gaps = 7/153 (4%)

Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSYRGAD+FVLAFSL+SRASYENVLKKW+PEL+ ++P VP+VLVGTK
Sbjct: 61  DTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTK 120

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           LDLR+ + YLADHP    +TTAQGEELRKQIGA+ YIECSSKTQQN+KAVFD AIKVV++
Sbjct: 121 LDLRDHRSYLADHPAASAITTAQGEELRKQIGAAAYIECSSKTQQNIKAVFDTAIKVVLQ 180

Query: 122 PPQKQKE------KKKKQRGCLL-NVFCGRNLV 147
           PP+++ E      K ++  GC L N+ CG   V
Sbjct: 181 PPRRRGETTMARKKTRRSTGCSLKNLMCGSACV 213

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6EP31|RAC5_ORYSJ Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2

 Score =  213 bits (542), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 104/137 (75%), Positives = 126/137 (91%)

Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP++LVGTK
Sbjct: 60  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTK 119

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           LDLR+DK +  DHPG VP++TAQGEELRK IGA+ YIECSSKTQQN+KAVFDAAIKVV++
Sbjct: 120 LDLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYIECSSKTQQNIKAVFDAAIKVVLQ 179

Query: 122 PPQKQKEKKKKQRGCLL 138
           PP+++K+KKK Q+GC +
Sbjct: 180 PPKQKKKKKKAQKGCAI 196

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P92978|RAC11_ARATH Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2

 Score =  213 bits (542), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 97/119 (81%), Positives = 110/119 (92%)

Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP+VLVGTK
Sbjct: 60  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTK 119

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120
           LDLR+DK +  DHPG VP+TTAQGEELRKQIGA  YIECSSKTQ+NVKAVFDAAI+VV+
Sbjct: 120 LDLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAIRVVL 178

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ZHA3|RAC6_ORYSJ Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1

 Score =  213 bits (541), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 97/119 (81%), Positives = 109/119 (91%)

Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP++LVGTK
Sbjct: 60  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTK 119

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120
           LDLR+DK +  DHPG VP+TTAQGEELRKQIGA YYIECSSKTQ NVK VFDAAIKVV+
Sbjct: 120 LDLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAIKVVL 178

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
224135767	211	predicted protein [Populus trichocarpa]	0.993	0.706	0.906	2e-73
224121658	211	predicted protein [Populus trichocarpa]	0.973	0.691	0.904	6e-73
388519237	211	unknown [Lotus japonicus]	0.98	0.696	0.871	7e-72
186477890	211	ROP small G protein [Medicago truncatula	0.98	0.696	0.858	6e-71
351734426	212	uncharacterized protein LOC100527158 [Gl	0.993	0.702	0.826	6e-69
449440696	210	PREDICTED: rac-like GTP-binding protein	0.98	0.7	0.904	2e-67
27527523	210	putative rac protein [Nicotiana tabacum]	0.973	0.695	0.904	9e-67
352740726	210	Rac/Rop GTPase 1 [Aquilaria microcarpa]	0.973	0.695	0.870	1e-66
324984199	211	small GTPase [Gossypium barbadense]	0.973	0.691	0.863	8e-66
345104383	211	small GTPase RacA [Gossypium schwendiman	0.973	0.691	0.863	8e-66

>gi|224135767|ref|XP_002322155.1| predicted protein [Populus trichocarpa] gi|222869151|gb|EEF06282.1| predicted protein [Populus trichocarpa]

 Score =  279 bits (714), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 136/150 (90%), Positives = 142/150 (94%), Gaps = 1/150 (0%)

Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY+PGVPVVLVGTK
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYAPGVPVVLVGTK 121

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           LDLREDKHYLADHPGLVPVT AQGEELRKQIGA+YYIECSSKTQQNVKAVFDAAIKVVIK
Sbjct: 122 LDLREDKHYLADHPGLVPVTMAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVIK 181

Query: 122 PPQKQKEKKKK-QRGCLLNVFCGRNLVRFE 150
           P QKQKE+KKK +RGCLLNVFCGR L+  E
Sbjct: 182 PAQKQKERKKKPRRGCLLNVFCGRRLLCLE 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121658|ref|XP_002318640.1| predicted protein [Populus trichocarpa] gi|222859313|gb|EEE96860.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (711), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 133/147 (90%), Positives = 141/147 (95%), Gaps = 1/147 (0%)

Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY+PG+P+VLVG K
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYAPGIPIVLVGAK 121

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           LDLREDKHYLADHPGLVPVTTAQGEELRKQIGA+YY+ECSSKTQQNVKAVFDAAIKVVIK
Sbjct: 122 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGAAYYVECSSKTQQNVKAVFDAAIKVVIK 181

Query: 122 PPQKQKEKKKK-QRGCLLNVFCGRNLV 147
           P QKQKE+KKK +RGCLLNVFCGR LV
Sbjct: 182 PAQKQKERKKKPRRGCLLNVFCGRRLV 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519237|gb|AFK47680.1| unknown [Lotus japonicus]

 Score =  274 bits (701), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 129/148 (87%), Positives = 141/148 (95%), Gaps = 1/148 (0%)

Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH++PGVPVVLVGTK
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHFAPGVPVVLVGTK 121

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           LDLREDKHYLADHPGLVPVT+ QGEELRKQIGA+YYIECSSKTQQNVK +FDAAI++VIK
Sbjct: 122 LDLREDKHYLADHPGLVPVTSEQGEELRKQIGATYYIECSSKTQQNVKGIFDAAIRMVIK 181

Query: 122 PPQKQKEKKKK-QRGCLLNVFCGRNLVR 148
           PPQKQ+EK+KK +RGC LNV CGRN+VR
Sbjct: 182 PPQKQQEKRKKPRRGCFLNVLCGRNIVR 209

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186477890|gb|ACC85689.1| ROP small G protein [Medicago truncatula] gi|217071564|gb|ACJ84142.1| unknown [Medicago truncatula] gi|388511066|gb|AFK43599.1| unknown [Medicago truncatula]

 Score =  271 bits (693), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 127/148 (85%), Positives = 139/148 (93%), Gaps = 1/148 (0%)

Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV KKWIPELQH++PGVPVVLVGTK
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVFKKWIPELQHFAPGVPVVLVGTK 121

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           LDLRED+HYLADHPG+VPVTT QGEELRKQIGA+YYIECSSKTQQNVK VFDAAI++VIK
Sbjct: 122 LDLREDRHYLADHPGMVPVTTEQGEELRKQIGATYYIECSSKTQQNVKGVFDAAIRMVIK 181

Query: 122 PPQKQKEKKKK-QRGCLLNVFCGRNLVR 148
           PPQKQ EK+KK +RGC LNV CGR++VR
Sbjct: 182 PPQKQHEKRKKARRGCFLNVLCGRSIVR 209

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351734426|ref|NP_001235733.1| uncharacterized protein LOC100527158 [Glycine max] gi|255631682|gb|ACU16208.1| unknown [Glycine max]

 Score =  265 bits (676), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 124/150 (82%), Positives = 138/150 (92%), Gaps = 1/150 (0%)

Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH++PG+P+VLVGTK
Sbjct: 63  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHFAPGIPLVLVGTK 122

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
            DLREDKHY+ADHP LVPVTT QGEELRK IGA+YYIECSSKTQQN+KAVFDAAI++VIK
Sbjct: 123 SDLREDKHYMADHPSLVPVTTDQGEELRKHIGATYYIECSSKTQQNMKAVFDAAIRMVIK 182

Query: 122 PPQKQKEKKKKQ-RGCLLNVFCGRNLVRFE 150
           PPQKQ EK+KK+ RGC LNV C RN+VR +
Sbjct: 183 PPQKQNEKRKKKPRGCFLNVLCRRNIVRLK 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440696|ref|XP_004138120.1| PREDICTED: rac-like GTP-binding protein 3-like [Cucumis sativus] gi|449526347|ref|XP_004170175.1| PREDICTED: rac-like GTP-binding protein 3-like [Cucumis sativus]

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 133/147 (90%), Positives = 140/147 (95%)

Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDYNRLRPLSYRGADVF+LAFSLVSRASYENVLKKWIPELQHY+PGVPVVLVGTK
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFILAFSLVSRASYENVLKKWIPELQHYAPGVPVVLVGTK 121

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           LDLREDK YLADHPGLVPVTT QGEELRKQIGA+YY+ECSSKTQQNVK+VFDAAIKVVIK
Sbjct: 122 LDLREDKFYLADHPGLVPVTTLQGEELRKQIGATYYVECSSKTQQNVKSVFDAAIKVVIK 181

Query: 122 PPQKQKEKKKKQRGCLLNVFCGRNLVR 148
           PPQKQKEKK+  RGCLLNVFCGRNL R
Sbjct: 182 PPQKQKEKKRPHRGCLLNVFCGRNLTR 208

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27527523|emb|CAD42725.1| putative rac protein [Nicotiana tabacum]

 Score =  257 bits (657), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 132/146 (90%), Positives = 141/146 (96%)

Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN+LKKWIPELQHY+PG+PVVL GTK
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENILKKWIPELQHYAPGIPVVLAGTK 121

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           LDLREDKH+LADHPGLVPVTTAQGEELRKQIGA+YYIECSSKTQQNVKAVFDAAIKVVIK
Sbjct: 122 LDLREDKHFLADHPGLVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIKVVIK 181

Query: 122 PPQKQKEKKKKQRGCLLNVFCGRNLV 147
           PPQKQKEKKK++RGCL+NV CGR LV
Sbjct: 182 PPQKQKEKKKQRRGCLMNVMCGRKLV 207

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|352740726|gb|AEQ62558.1| Rac/Rop GTPase 1 [Aquilaria microcarpa]

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 128/147 (87%), Positives = 140/147 (95%), Gaps = 1/147 (0%)

Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY+PGVPVVLVGTK
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYAPGVPVVLVGTK 121

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI- 120
           LDLREDKHYLADHPG VPVTTAQGEELRKQIGA+YYIECSSKTQQNVKAVFDAAI+VVI 
Sbjct: 122 LDLREDKHYLADHPGSVPVTTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDAAIRVVIK 181

Query: 121 KPPQKQKEKKKKQRGCLLNVFCGRNLV 147
            P +++++K+K+ RGCL+NVFCGRNLV
Sbjct: 182 PPQKQKEKKQKQNRGCLINVFCGRNLV 208

Source: Aquilaria microcarpa

Species: Aquilaria microcarpa

Genus: Aquilaria

Family: Thymelaeaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|324984199|gb|ADY68833.1| small GTPase [Gossypium barbadense]

 Score =  254 bits (649), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 127/147 (86%), Positives = 138/147 (93%), Gaps = 1/147 (0%)

Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY+PGVPVVLVGTK
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYAPGVPVVLVGTK 121

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI- 120
           LDLREDKHYLADHPGL+PV+TAQGEELRKQIGA+YYIECSSKTQQNVKAVFD AIKVVI 
Sbjct: 122 LDLREDKHYLADHPGLLPVSTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDDAIKVVIK 181

Query: 121 KPPQKQKEKKKKQRGCLLNVFCGRNLV 147
            P +++++KKK  RGCL+NVFCGRN V
Sbjct: 182 PPQKQKEKKKKPSRGCLINVFCGRNFV 208

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345104383|gb|AEN71013.1| small GTPase RacA [Gossypium schwendimanii]

 Score =  254 bits (649), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 127/147 (86%), Positives = 138/147 (93%), Gaps = 1/147 (0%)

Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY+PGVPVVLVGTK
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYAPGVPVVLVGTK 121

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI- 120
           LDLREDKHYLADHPGL+PV+TAQGEELRKQIGA+YYIECSSKTQQNVKAVFD AIKVVI 
Sbjct: 122 LDLREDKHYLADHPGLLPVSTAQGEELRKQIGAAYYIECSSKTQQNVKAVFDDAIKVVIK 181

Query: 121 KPPQKQKEKKKKQRGCLLNVFCGRNLV 147
            P +++++KKK  RGCL+NVFCGRN V
Sbjct: 182 PPQKQKEKKKKPSRGCLINVFCGRNFV 208

Source: Gossypium schwendimanii

Species: Gossypium schwendimanii

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
UNIPROTKB|Q6Z808	214	RAC3 "Rac-like GTP-binding pro	0.973	0.682	0.731	1.3e-54
TAIR|locus:2097905	208	ROP10 "RHO-related protein fro	0.94	0.677	0.743	1.6e-54
TAIR|locus:2170778	215	RAC10 "RAC-like 10" [Arabidops	0.96	0.669	0.74	8.9e-54
TAIR|locus:2080878	197	ROP1 "RHO-related protein from	0.74	0.563	0.846	8.5e-49
UNIPROTKB|Q6ZHA3	197	RAC6 "Rac-like GTP-binding pro	0.74	0.563	0.837	1.1e-48
TAIR|locus:2198566	195	ROP2 "RHO-related protein from	0.74	0.569	0.801	2.6e-47
TAIR|locus:2827916	197	ARAC1 "Arabidopsis RAC-like 1"	0.74	0.563	0.819	2.6e-47
TAIR|locus:2204380	196	ARAC5 "RAC-like GTP binding pr	0.74	0.566	0.810	3.3e-47
TAIR|locus:2131606	198	RAC3 "RAC-like 3" [Arabidopsis	0.74	0.560	0.810	4.2e-47
TAIR|locus:2125399	197	RAC6 "RAC-like 6" [Arabidopsis	0.74	0.563	0.801	1.8e-46

UNIPROTKB|Q6Z808 RAC3 "Rac-like GTP-binding protein 3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 109/149 (73%), Positives = 123/149 (82%)

Query:     5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
             GQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN++KKWIPELQHY+PGVP+VLVGTKLDL
Sbjct:    65 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENIMKKWIPELQHYAPGVPIVLVGTKLDL 124

Query:    65 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAXXXXXX--X 122
             REDKHYL DHPG++PVTTAQGEELRKQIGA+YYIECSSKTQQNVK VFDAA         
Sbjct:   125 REDKHYLLDHPGMIPVTTAQGEELRKQIGAAYYIECSSKTQQNVKGVFDAAIKVVIQPPT 184

Query:   123 XXXXXXXXXXQRGC-LLNVFCGRNLVRFE 150
                       ++GC ++N+F GR +  F+
Sbjct:   185 KQREKKKKKSRQGCSMMNMFRGRKMSCFK 213

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2097905 ROP10 "RHO-related protein from plants 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 107/144 (74%), Positives = 119/144 (82%)

Query:     5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
             GQEDYNRLRPLSYRGADVFVLAFSL+SRASYENV KKWIPELQH++PGVP+VLVGTK+DL
Sbjct:    65 GQEDYNRLRPLSYRGADVFVLAFSLISRASYENVFKKWIPELQHFAPGVPIVLVGTKMDL 124

Query:    65 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAXXXXXXXXX 124
             RED+HYL+DHPGL PVTT+QGEELRK IGA+YYIECSSKTQQNVKAVFDAA         
Sbjct:   125 REDRHYLSDHPGLSPVTTSQGEELRKHIGATYYIECSSKTQQNVKAVFDAAIKVVIKPAV 184

Query:   125 XXXXXXXXQR---GCLLNVFCGRN 145
                     Q+   GCL N+ CG+N
Sbjct:   185 KQKEKKKKQKPRSGCLSNILCGKN 208

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0009738 "abscisic acid mediated signaling pathway" evidence=TAS

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=TAS

GO:0003924 "GTPase activity" evidence=ISS

GO:0007015 "actin filament organization" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2170778 RAC10 "RAC-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 111/150 (74%), Positives = 120/150 (80%)

Query:     5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
             GQEDYNRLRPLSYRGADVFVL+FSLVSRASYENV KKWIPELQH++PGVP+VLVGTKLDL
Sbjct:    65 GQEDYNRLRPLSYRGADVFVLSFSLVSRASYENVFKKWIPELQHFAPGVPLVLVGTKLDL 124

Query:    65 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAXXXXXXXXX 124
             REDKHYLADHPGL PVTTAQGEELRK IGA+YYIECSSKTQQNVKAVFD+A         
Sbjct:   125 REDKHYLADHPGLSPVTTAQGEELRKLIGATYYIECSSKTQQNVKAVFDSAIKEVIKPLV 184

Query:   125 XXXXXXXXQR------GCLLNVFCGRNLVR 148
                     ++      GCL NV CGR + R
Sbjct:   185 KQKEKTKKKKKQKSNHGCLSNVLCGRIVTR 214

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IDA

GO:0019903 "protein phosphatase binding" evidence=IPI

GO:0007015 "actin filament organization" evidence=RCA

GO:0009531 "secondary cell wall" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0005525 "GTP binding" evidence=TAS

TAIR|locus:2080878 ROP1 "RHO-related protein from plants 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 94/111 (84%), Positives = 104/111 (93%)

Query:     5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
             GQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP+VLVGTKLDL
Sbjct:    63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDL 122

Query:    65 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
             R+DK +  DHPG VP+TTAQGEELRKQIGA  YIECSSKTQ+NVKAVFDAA
Sbjct:   123 RDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAA 173

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0005886 "plasma membrane" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030833 "regulation of actin filament polymerization" evidence=IGI

GO:0030834 "regulation of actin filament depolymerization" evidence=IGI

GO:0017157 "regulation of exocytosis" evidence=IDA

GO:0051650 "establishment of vesicle localization" evidence=IDA

GO:0032794 "GTPase activating protein binding" evidence=IPI

GO:0045177 "apical part of cell" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0030036 "actin cytoskeleton organization" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0003924 "GTPase activity" evidence=ISS

UNIPROTKB|Q6ZHA3 RAC6 "Rac-like GTP-binding protein 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 93/111 (83%), Positives = 103/111 (92%)

Query:     5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
             GQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP++LVGTKLDL
Sbjct:    63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDL 122

Query:    65 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
             R+DK +  DHPG VP+TTAQGEELRKQIGA YYIECSSKTQ NVK VFDAA
Sbjct:   123 RDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAA 173

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2198566 ROP2 "RHO-related protein from plants 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 89/111 (80%), Positives = 103/111 (92%)

Query:     5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
             GQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN+ KKWIPEL+HY+PGVP++LVGTKLDL
Sbjct:    62 GQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDL 121

Query:    65 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
             R+DK +  DHPG VP+TT QGEEL+K IG++ YIECSSKTQQNVKAVFDAA
Sbjct:   122 RDDKQFFIDHPGAVPITTNQGEELKKLIGSAVYIECSSKTQQNVKAVFDAA 172

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA;IMP

GO:0000902 "cell morphogenesis" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IDA

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2827916 ARAC1 "Arabidopsis RAC-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 91/111 (81%), Positives = 102/111 (91%)

Query:     5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
             GQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP+VLVGTKLDL
Sbjct:    63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDL 122

Query:    65 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
             R+DK +  DHPG VP+TTAQGEEL+K IGA  YIECSSKTQ+NVK VFDAA
Sbjct:   123 RDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKGVFDAA 173

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2204380 ARAC5 "RAC-like GTP binding protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 90/111 (81%), Positives = 102/111 (91%)

Query:     5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
             GQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP++LVGTKLDL
Sbjct:    63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122

Query:    65 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
             R+DK +  DHPG VP+TT QGEEL+K IG+  YIECSSKTQQNVKAVFDAA
Sbjct:   123 RDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAA 173

GO:0005525 "GTP binding" evidence=IEA;IDA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2131606 RAC3 "RAC-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 90/111 (81%), Positives = 104/111 (93%)

Query:     5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
             GQEDYNRLRPLSYRGADVF+LAFSLVS+ASYENV KKW+PEL+HY+PGVP++LVGTKLDL
Sbjct:    63 GQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKLDL 122

Query:    65 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
             R+DK + A+HPG VP++TAQGEEL+K IGA  YIECS+KTQQNVKAVFDAA
Sbjct:   123 RDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAA 173

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030427 "site of polarized growth" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2125399 RAC6 "RAC-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 89/111 (80%), Positives = 101/111 (90%)

Query:     5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
             GQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP+VLVGTKLDL
Sbjct:    63 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDL 122

Query:    65 REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
             R+DK +  DHPG VP+TT QGEEL+K IGA  YIECSSK+Q+NVK VFDAA
Sbjct:   123 RDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAA 173

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34145	RAC1B_DICDI	No assigned EC number	0.5107	0.9	0.6958	yes	no
Q6RUV5	RAC1_RAT	No assigned EC number	0.5251	0.8866	0.6927	yes	no
P63000	RAC1_HUMAN	No assigned EC number	0.5251	0.8866	0.6927	yes	no
Q9SU67	RAC8_ARATH	No assigned EC number	0.7891	0.96	0.6923	yes	no
P40792	RAC1_DROME	No assigned EC number	0.5151	0.8666	0.6770	yes	no
P62998	RAC1_BOVIN	No assigned EC number	0.5251	0.8866	0.6927	yes	no
P62999	RAC1_CANFA	No assigned EC number	0.5251	0.8866	0.6927	yes	no
Q41253	RAC13_GOSHI	No assigned EC number	0.7731	0.7933	0.6071	N/A	no
O04369	RAC1_LOTJA	No assigned EC number	0.7777	0.9	0.6852	N/A	no
Q40220	RAC2_LOTJA	No assigned EC number	0.8	0.8	0.6122	N/A	no
Q6Z808	RAC3_ORYSJ	No assigned EC number	0.8026	0.9933	0.6962	yes	no
P63001	RAC1_MOUSE	No assigned EC number	0.5251	0.8866	0.6927	yes	no
Q39435	RAC1_BETVU	No assigned EC number	0.8235	0.7933	0.6040	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	150
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-82
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-64
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	4e-59
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	2e-54
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	3e-48
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	4e-42
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	2e-41
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	1e-39
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	1e-39
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	5e-38
pfam00071	162	pfam00071, Ras, Ras family	8e-38
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-32
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	9e-32
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	6e-30
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	6e-26
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	3e-23
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-22
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-20
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	2e-19
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	3e-19
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	5e-19
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	5e-18
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	7e-18
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	3e-17
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	6e-16
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	1e-15
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	3e-15
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	6e-14
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-13
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	1e-13
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-13
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	7e-13
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	2e-12
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-12
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	4e-12
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	4e-12
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	4e-12
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	5e-12
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	6e-12
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	7e-12
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	4e-11
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	5e-11
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	7e-11
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	8e-11
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	1e-10
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-10
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	3e-10
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	3e-10
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	6e-10
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-09
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	1e-09
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	1e-09
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-09
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	3e-09
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	3e-09
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	4e-09
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	4e-09
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	6e-09
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	3e-08
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	3e-08
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	5e-08
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	6e-08
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	8e-08
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	8e-08
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	1e-07
pfam08477	116	pfam08477, Miro, Miro-like protein	2e-07
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	5e-07
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	7e-07
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	2e-06
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	5e-06
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	6e-06
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	6e-06
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	9e-06
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	1e-05
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	1e-05
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	1e-05
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-05
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	6e-05
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	6e-05
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-04
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	4e-04
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	8e-04
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	9e-04
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	0.001

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score =  240 bits (613), Expect = 1e-82
 Identities = 101/116 (87%), Positives = 112/116 (96%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENVLKKWIPEL+HY+PGVP+VLVGTKLDL
Sbjct: 58  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGTKLDL 117

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120
           R+DK + ADHPG VP+TTAQGEELRKQIGA+ YIECSSKTQQNVKAVFDAAIKVV+
Sbjct: 118 RDDKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  193 bits (494), Expect = 2e-64
 Identities = 64/120 (53%), Positives = 85/120 (70%), Gaps = 2/120 (1%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQEDY+RLRPLSY   DVF++ FS+ S AS+ENV +KW PE++H+ P VP++LVGTKLDL
Sbjct: 55  GQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPIILVGTKLDL 114

Query: 65  REDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122
           R DK  L +       PVT  QG+ L K+IGA  Y+ECS+ TQ+ V+ VF+ AI+  +  
Sbjct: 115 RNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIRAALNK 174

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  180 bits (459), Expect = 4e-59
 Identities = 62/115 (53%), Positives = 84/115 (73%), Gaps = 1/115 (0%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE+Y+RLRPLSY   DVF+L FS+ S +S+ENV  KW PE++HY P VP++LVGTK+DL
Sbjct: 57  GQEEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIILVGTKIDL 116

Query: 65  REDKHYLADH-PGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118
           R+D + L        P+T  +GE+L K+IGA  Y+ECS+ TQ+ +K VFD AI+ 
Sbjct: 117 RDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIRA 171

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  169 bits (431), Expect = 2e-54
 Identities = 68/136 (50%), Positives = 91/136 (66%), Gaps = 2/136 (1%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQEDY+RLRPLSY   DV ++ +S+ +  S +NV  KW PE+ H+ PG P+VLVG K DL
Sbjct: 61  GQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVLVGLKTDL 120

Query: 65  REDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122
           R+DK+ ++     GL PVT  QGE + K IGA  YIECS+K  +NV  VFDAAI V +  
Sbjct: 121 RKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINVALSK 180

Query: 123 PQKQKEKKKKQRGCLL 138
             +   KKKK++ C++
Sbjct: 181 SGRAARKKKKKKKCVI 196

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score =  153 bits (387), Expect = 3e-48
 Identities = 65/117 (55%), Positives = 84/117 (71%), Gaps = 2/117 (1%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQEDY+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDL
Sbjct: 58  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 117

Query: 65  REDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119
           R+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ V
Sbjct: 118 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 174

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score =  137 bits (347), Expect = 4e-42
 Identities = 53/114 (46%), Positives = 83/114 (72%), Gaps = 2/114 (1%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQ+++++LRPL Y   DVF+L FS+V+ +S++N+ +KWIPE++ ++P  P++LVGT+ DL
Sbjct: 57  GQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADL 116

Query: 65  REDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI 116
           R D + L      G  PV+ ++ + L ++IGA  YIECS+ TQ+N+K VFD AI
Sbjct: 117 RTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI 170

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score =  135 bits (342), Expect = 2e-41
 Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 2/114 (1%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DL
Sbjct: 58  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 117

Query: 65  REDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI 116
           R+D   +         P+T   GE+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 118 RDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAI 171

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score =  131 bits (330), Expect = 1e-39
 Identities = 60/118 (50%), Positives = 88/118 (74%), Gaps = 2/118 (1%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQEDY+RLRPLSY   DVF++ FS+V+ AS++NV ++W+PEL+ Y+P VP +L+GT++DL
Sbjct: 57  GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIGTQIDL 116

Query: 65  REDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120
           R+D   LA  +     P+T  QG++L K+IGA  Y+ECS+ TQ+ +K VFD AI  ++
Sbjct: 117 RDDPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score =  131 bits (331), Expect = 1e-39
 Identities = 61/128 (47%), Positives = 79/128 (61%), Gaps = 2/128 (1%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE+Y+RLR LSY   +VF++ FS+ S +SYENV  KW PE+ H+ P VP++LVGTK DL
Sbjct: 60  GQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDL 119

Query: 65  REDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122
           R D   L      G  P+T  QG  L KQI A  Y+ECS+  Q  VK VF  A++ V+ P
Sbjct: 120 RNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNP 179

Query: 123 PQKQKEKK 130
              +  K 
Sbjct: 180 TPIKDTKS 187

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score =  127 bits (320), Expect = 5e-38
 Identities = 53/115 (46%), Positives = 78/115 (67%), Gaps = 2/115 (1%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DL
Sbjct: 58  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 117

Query: 65  REDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 117
           R D+H + +       PV   +G  + ++IGA  Y+ECS+KT++ V+ VF+ A +
Sbjct: 118 RNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEMATR 172

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  126 bits (318), Expect = 8e-38
 Identities = 47/118 (39%), Positives = 72/118 (61%), Gaps = 13/118 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLD 63
           GQE +  LRPL YRGA  F+L + + SR S+ENV KKW+ E+  ++   VP+VLVG K D
Sbjct: 57  GQERFRALRPLYYRGAQGFLLVYDITSRDSFENV-KKWLEEILRHADENVPIVLVGNKCD 115

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           L + +           V+T +GE L K++G   ++E S+KT +NV+  F+   + ++K
Sbjct: 116 LEDQR----------VVSTEEGEALAKELGL-PFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score =  112 bits (282), Expect = 2e-32
 Identities = 48/114 (42%), Positives = 71/114 (62%), Gaps = 3/114 (2%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           G   Y+ +RPLSY  +D  ++ F +    + ++VLKKW  E++ + P  PV+LVG K DL
Sbjct: 58  GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKSDL 117

Query: 65  REDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN-VKAVFDAA 115
           R D   L +  +   +PV+  QG  L KQIGA+ Y+ECS+KT +N V+ VF+ A
Sbjct: 118 RTDLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEMA 171

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score =  111 bits (279), Expect = 9e-32
 Identities = 51/132 (38%), Positives = 77/132 (58%), Gaps = 2/132 (1%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE+Y RLRPLSY  A V ++ F++ +  S ENV  KWI E++ Y P VPV+LVG K DL
Sbjct: 58  GQEEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDL 117

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124
           R++     ++     V   Q + + + IGA  Y+ECS+ T + V  VF+AA +  +    
Sbjct: 118 RQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATRAALL--V 175

Query: 125 KQKEKKKKQRGC 136
           ++  K++    C
Sbjct: 176 RKSGKEEPGANC 187

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score =  106 bits (267), Expect = 6e-30
 Identities = 46/125 (36%), Positives = 70/125 (56%), Gaps = 4/125 (3%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE+++RLR LSY    V +L FS+ +  S ENV  KW+ E++H+ PGV +VLV  K DL
Sbjct: 57  GQEEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVLVALKCDL 116

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD--AAIKVVIKP 122
           RE ++          ++  +G  + K+I A  Y+ECS+K  + V   F   A + +  +P
Sbjct: 117 REPRNERDRGTHT--ISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVALNARP 174

Query: 123 PQKQK 127
           P    
Sbjct: 175 PHPHS 179

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 95.6 bits (239), Expect = 6e-26
 Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 13/114 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +  +    YRGA   +L + + +R S+EN+  KW+ EL+ Y  P +P++LVG K D
Sbjct: 58  GQERFRSITSSYYRGAHGAILVYDVTNRESFENL-DKWLNELKEYAPPNIPIILVGNKSD 116

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 117
           L +++           V+T + ++  K+ G  ++ E S+KT +NV   F++  +
Sbjct: 117 LEDERQ----------VSTEEAQQFAKENGLLFF-ETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 90.5 bits (224), Expect = 3e-23
 Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 3/134 (2%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           G   Y+ +RPL+Y  +D  ++ F +    + ++VLKKW  E Q + P   +VLVG KLD+
Sbjct: 58  GSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDM 117

Query: 65  REDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN-VKAVFDAAIKVVIK 121
           R D   L +     L+PVT  QG  L +Q+GA  Y+ECSS+  +N V+ VF       ++
Sbjct: 118 RTDLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASVR 177

Query: 122 PPQKQKEKKKKQRG 135
                 ++   +RG
Sbjct: 178 REHPSLKRSTSRRG 191

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 86.4 bits (215), Expect = 3e-22
 Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 13/118 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLD 63
           GQE +  +    YRGA   +L + + +R S+EN+ + W+ EL+ Y+ P V ++LVG K D
Sbjct: 58  GQERFRSITSSYYRGAVGALLVYDITNRESFENL-ENWLKELREYASPNVVIMLVGNKSD 116

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           L E +           V+  + E   ++ G   + E S+KT  NV+  F+   + ++K
Sbjct: 117 LEEQRQ----------VSREEAEAFAEEHGLP-FFETSAKTNTNVEEAFEELAREILK 163

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 82.0 bits (202), Expect = 2e-20
 Identities = 44/114 (38%), Positives = 65/114 (57%), Gaps = 3/114 (2%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           G   Y+ +RPLSY  +D  ++ F +    + ++VLKKW  E+Q + P   ++LVG K DL
Sbjct: 62  GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 121

Query: 65  REDKHYLADHPG--LVPVTTAQGEELRKQIGASYYIECSSKTQQN-VKAVFDAA 115
           R D   L +       PV+  QG  + KQIGA+ YIECS+   +N V+ +F  A
Sbjct: 122 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 175

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 80.0 bits (197), Expect = 2e-19
 Identities = 49/119 (41%), Positives = 66/119 (55%), Gaps = 10/119 (8%)

Query: 8   DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE- 66
           D+++ R  +Y  +DV +L FS+ S  S  NV   W PE++H+ P VPV+LVG KLDLR  
Sbjct: 76  DHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYA 135

Query: 67  --DKHYLADHPGLVPVTTA------QGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 117
             D+   A  P   P+  A       G  + K++G  YY E S  TQ  VK VFD AI+
Sbjct: 136 DLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYY-ETSVVTQFGVKDVFDNAIR 193

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 80.0 bits (197), Expect = 3e-19
 Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 7/142 (4%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE+Y  LRP  YRGA+  ++ +    R S + + ++W+ EL+      VP++LVG K+D
Sbjct: 63  GQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKID 122

Query: 64  LRED----KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK--TQQNVKAVFDAAIK 117
           L ++    +  L      V +     + +  ++     +E S+K  T  NV  +F   ++
Sbjct: 123 LFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLR 182

Query: 118 VVIKPPQKQKEKKKKQRGCLLN 139
            +++  +K   K + ++   LN
Sbjct: 183 KLLEEIEKLVLKNELRQLDRLN 204

Length = 219

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 79.7 bits (196), Expect = 5e-19
 Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 3/133 (2%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           G   Y+ +RPL Y  +D  +L F +     +++ LKKW  E+  Y P   ++L+G K DL
Sbjct: 70  GSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIGCKTDL 129

Query: 65  REDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKT-QQNVKAVFDAAIKVVIK 121
           R D   L +  +    P++  QG  + KQ+GA  Y+ECS+ T ++++ ++F  A  + I 
Sbjct: 130 RTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCIN 189

Query: 122 PPQKQKEKKKKQR 134
                 +K   + 
Sbjct: 190 KLSPLAKKSPVRS 202

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 75.3 bits (186), Expect = 5e-18
 Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 13/117 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLD 63
           GQE Y+ L P+ YR AD  +L + +    S++ V KKWI EL+      + +V+VG K+D
Sbjct: 58  GQERYHALGPIYYRDADGAILVYDITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKID 116

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120
           L   +           V+ ++ EE  K +GA ++ E S+KT + ++ +F +  K +I
Sbjct: 117 LERQRV----------VSKSEAEEYAKSVGAKHF-ETSAKTGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 74.9 bits (185), Expect = 7e-18
 Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 20/118 (16%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKL 62
           GQE+++ +R    R  D F+L +S+ SR S+E +  +++ I  +      VP+VLVG K 
Sbjct: 56  GQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRV-KDKEDVPIVLVGNKC 114

Query: 63  DL---REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 117
           DL   R+             V+T +GE L ++ G   ++E S+KT  N+  +F+  ++
Sbjct: 115 DLENERQ-------------VSTEEGEALAEEWGCP-FLETSAKTNINIDELFNTLVR 158

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 73.4 bits (181), Expect = 3e-17
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 13/111 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLD 63
           GQE Y  L P+ YRGA   ++ + + S  S+E   K W+ ELQ H  P + + L G K D
Sbjct: 59  GQERYRSLAPMYYRGAAAAIVVYDITSEESFEK-AKSWVKELQEHGPPNIVIALAGNKAD 117

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 114
           L   +           V+T + +E   + G   ++E S+KT +NV  +F  
Sbjct: 118 LESKRQ----------VSTEEAQEYADENGL-LFMETSAKTGENVNELFTE 157

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 69.9 bits (172), Expect = 6e-16
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 14/119 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYE--NVLKKWIPELQHYSPGVPVVLVGTKL 62
           GQE+++ +R    R  + F+L +S+  R S+E     ++ I  ++     VP+VLVG K 
Sbjct: 57  GQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRD-DVPIVLVGNKC 115

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           DL  ++           V+T +G+EL +Q G   ++E S+K + NV   F   ++ + K
Sbjct: 116 DLESERV----------VSTEEGKELARQWGCP-FLETSAKERVNVDEAFYDLVREIRK 163

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 69.5 bits (171), Expect = 1e-15
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 14/120 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKL 62
           GQE+++ +R    R  + F+L +S+  R S+E +   ++ I  ++     VP+VLVG K 
Sbjct: 59  GQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDD-VPIVLVGNKC 117

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122
           DL  ++           V+T +G+EL +Q G   ++E S+K + NV   F   ++ + K 
Sbjct: 118 DLENERV----------VSTEEGKELARQWGCP-FLETSAKERINVDEAFYDLVREIRKS 166

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 69.1 bits (169), Expect = 3e-15
 Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 17/143 (11%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE--NVLKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R    F+  +S+ SR+S+E     ++ I  ++     VP++LV
Sbjct: 58  LDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILV 116

Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118
           G K DL  ++           V+T +G+EL K  G   ++E S+K + NV   F   ++ 
Sbjct: 117 GNKCDLDSERQ----------VSTGEGQELAKSFGIP-FLETSAKQRVNVDEAFYELVRE 165

Query: 119 V---IKPPQKQKEKKKKQRGCLL 138
           +   +K     +++KKK   CL+
Sbjct: 166 IRKYLKEDMPSQKQKKKGGLCLI 188

Length = 189

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 64.7 bits (158), Expect = 6e-14
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 13/109 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  +LVG K D
Sbjct: 60  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCD 118

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           L + K           V   + +E   ++G   ++E S+K   NV+  F
Sbjct: 119 LTDKK----------VVDYTEAKEFADELGIP-FLETSAKNATNVEEAF 156

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 64.2 bits (157), Expect = 1e-13
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 19/112 (16%)

Query: 5   GQEDYNRLRPLS---YRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGT 60
           GQE   R R ++   YRGA   +L + +    S+EN+ K W+  + +H S  V  +LVG 
Sbjct: 61  GQE---RFRTITTSYYRGAMGIILVYDITDEKSFENI-KNWMRNIDEHASEDVERMLVGN 116

Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K D+ E +           V+  +GE L ++ G  +  E S+K   NV+  F
Sbjct: 117 KCDMEEKRV----------VSKEEGEALAREYGIKFL-ETSAKANINVEEAF 157

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 63.9 bits (156), Expect = 1e-13
 Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 17/110 (15%)

Query: 18  RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 77
           R A+V  L +S+   ++ E +  KW+P ++     VP++LVG K DLR+           
Sbjct: 71  RKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSS-------- 122

Query: 78  VPVTTAQGEELRKQIGASY-----YIECSSKTQQNVKAVFDAAIKVVIKP 122
                A  EE    I   +      +ECS+KT  NV  VF  A K V+ P
Sbjct: 123 ----QAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLHP 168

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 63.2 bits (154), Expect = 2e-13
 Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 17/118 (14%)

Query: 5   GQEDYNRLRP-----LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVG 59
           G +++  L       L  RGAD+ +L      R S E+     +  L     G+P++LVG
Sbjct: 56  GLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRL--RKEGIPIILVG 113

Query: 60  TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 117
            K+DL E++           V      E   +I      E S+KT + V  +F+  I+
Sbjct: 114 NKIDLLEER----------EVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 62.1 bits (151), Expect = 7e-13
 Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 15/110 (13%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKL 62
           GQE+Y+ +R    R  + F+  F++ SR S+E++   ++ I  ++  S  VP+VLVG K 
Sbjct: 58  GQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKC 116

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           DL               V+T QG++L K  G   YIE S+KT+Q V+  F
Sbjct: 117 DLAART-----------VSTRQGQDLAKSYGIP-YIETSAKTRQGVEEAF 154

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 60.7 bits (148), Expect = 2e-12
 Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 15/111 (13%)

Query: 5   GQEDYNRLRPLSY-RGADVFVLAFSLVSRASYENVLKKWIPELQH-YSPGVPVVLVGTKL 62
           GQE +  L P SY R + V V+ + + +R S++N   KWI +++      V +VLVG K 
Sbjct: 58  GQERFRSLIP-SYIRDSSVAVVVYDITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKT 115

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
           DL + +           V+T +GE+  K+  A  +IE S+K   NVK +F 
Sbjct: 116 DLSDKRQ----------VSTEEGEKKAKENNA-MFIETSAKAGHNVKQLFK 155

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 60.8 bits (148), Expect = 2e-12
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 15/111 (13%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKL 62
           GQE +  L    YRGA   +L + +  R +++N L  W+ EL  YS  P    +LVG K+
Sbjct: 58  GQERFRTLTSSYYRGAQGVILVYDVTRRDTFDN-LDTWLNELDTYSTNPDAVKMLVGNKI 116

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
           D                VT  +G++  ++     +IE S+KT+  V+  F+
Sbjct: 117 DKEN-----------REVTREEGQKFARKHNM-LFIETSAKTRIGVQQAFE 155

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 60.3 bits (147), Expect = 4e-12
 Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 20/132 (15%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG---VPVVLVGTK 61
           GQ++Y+ L      G   ++L +S+ SR S+E V  K I +      G   VP+VLVG K
Sbjct: 58  GQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVV--KVIYDKILDMLGKESVPIVLVGNK 115

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI----K 117
            DL  ++           V+  +G++L +  GA+ ++E S+K  +NV+  F+  I    K
Sbjct: 116 SDLHMERQ----------VSAEEGKKLAESWGAA-FLESSAKENENVEEAFELLIEEIEK 164

Query: 118 VVIKPPQKQKEK 129
           V    P  QK K
Sbjct: 165 VENPLPPGQKSK 176

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 59.7 bits (145), Expect = 4e-12
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 14/111 (12%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSP-GVPVVLVGTKL 62
           GQEDY+ +R L YR  +  +  F +V      E +L+K   E+ H++  GVP++LVG K+
Sbjct: 60  GQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKI 119

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
           DLR+ K           + T       K  G    I  S++T +N+ + F 
Sbjct: 120 DLRDAK-----------LKTHVAFLFAKLNGEP-IIPLSAETGKNIDSAFK 158

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 60.2 bits (146), Expect = 4e-12
 Identities = 42/148 (28%), Positives = 79/148 (53%), Gaps = 28/148 (18%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ----HYSPGVPVVLVGT 60
           GQE+Y  LR    R  + F+L +S+ SR+++E V +++  ++Q      +  VP+++VG 
Sbjct: 56  GQEEYTALRDQWIREGEGFILVYSITSRSTFERV-ERFREQIQRVKDESAADVPIMIVGN 114

Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120
           K D   ++           V+T +G  L +++G   +IE S+KT  NV+  F   ++ + 
Sbjct: 115 KCDKVYERE----------VSTEEGAALARRLG-CEFIEASAKTNVNVERAFYTLVRALR 163

Query: 121 KPPQKQ----------KEKKKKQRGCLL 138
           +  Q+Q          K+K+KK+R C++
Sbjct: 164 Q--QRQGGQGPKGGPTKKKEKKKRKCVI 189

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 59.5 bits (144), Expect = 5e-12
 Identities = 34/116 (29%), Positives = 61/116 (52%), Gaps = 13/116 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLD 63
           GQE Y  +    YRGA  F+L + + +  S+ N ++ W  +++ YS     V+LVG K D
Sbjct: 59  GQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVILVGNKCD 117

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119
           + +++           V+  +G +L  Q+G  ++ E S+K   NVK VF+  + ++
Sbjct: 118 MEDER----------VVSAERGRQLADQLGFEFF-EASAKENINVKQVFERLVDII 162

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 59.4 bits (144), Expect = 6e-12
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 12/109 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE+++ +    YRGA   +L FS   R S+E + + W  +++     +P+VLV TK+DL
Sbjct: 60  GQEEFDAITKAYYRGAQACILVFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDL 118

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
            +             +T  + E L K++    +   S K   NV  +F+
Sbjct: 119 LDQ----------AVITNEEAEALAKRLQLPLF-RTSVKDDFNVTELFE 156

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 59.4 bits (144), Expect = 7e-12
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 12/109 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +  +    YR A+  ++A+ +  R+S+E+V   WI E++ Y +  V ++L+G K D
Sbjct: 61  GQERFRTITQSYYRSANGAIIAYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCD 119

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           L E +           V   +   L +  G    +E S+K   NV+  F
Sbjct: 120 LEEQRE----------VLFEEACTLAEHYGILAVLETSAKESSNVEEAF 158

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 57.7 bits (140), Expect = 4e-11
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 16/122 (13%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSP----GVPVVLVG 59
           GQE +  L    YRGAD  VL + + +  S+E+ L  W  E L   SP      P V++G
Sbjct: 58  GQERFQSLGVAFYRGADCCVLVYDVTNPKSFES-LDSWRDEFLIQASPRDPENFPFVVLG 116

Query: 60  TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119
            K+DL E+K           V+T + ++  K  G   Y E S+K   NV   F+   ++ 
Sbjct: 117 NKIDL-EEKR---------QVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLA 166

Query: 120 IK 121
           ++
Sbjct: 167 LE 168

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 57.8 bits (139), Expect = 5e-11
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 14/121 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV--LVGTKL 62
           GQE +  L    YR A   +L + +  R ++ N+   W  E++ YS     V  LVG K+
Sbjct: 71  GQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKV 130

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA-AIKVVIK 121
           D   ++           V+  +G  L K+ G   ++ECS+KT++NV+  F+  A+K++  
Sbjct: 131 DRESER----------DVSREEGMALAKEHGCL-FLECSAKTRENVEQCFEELALKIMEV 179

Query: 122 P 122
           P
Sbjct: 180 P 180

Length = 211

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 56.7 bits (137), Expect = 7e-11
 Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 14/119 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH--YSPGVPVVLVGTKL 62
           GQE +  L    +R A  F+L F L S  S+ NV + W+ +LQ   Y     +VL+G K 
Sbjct: 72  GQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNV-RNWMSQLQAHAYCENPDIVLIGNKA 130

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           DL + +           V+  Q  EL  + G   Y E S+ T QNV+   +  + +++K
Sbjct: 131 DLPDQRE----------VSERQARELADKYGIP-YFETSAATGQNVEKAVETLLDLIMK 178

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 56.8 bits (137), Expect = 8e-11
 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 17/120 (14%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVG 59
           GQE +  LR   YRG+D  +L FS+    S++N L  W  E  +Y+        P V++G
Sbjct: 63  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILG 121

Query: 60  TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119
            K+D+ E +           V+T + +   +  G   Y E S+K   NV A F+ A++ V
Sbjct: 122 NKIDIPERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 56.8 bits (137), Expect = 1e-10
 Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 8/108 (7%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           G E Y  +  + YRGA   ++ + L   +S+E   K W+ ELQ+      + L GTK DL
Sbjct: 59  GSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDL 117

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
            E          L  V     ++   +I A ++ E SSKT QNV  +F
Sbjct: 118 IEQDR------SLRQVDFHDVQDFADEIKAQHF-ETSSKTGQNVDELF 158

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 14/110 (12%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPV-VLVGTKL 62
           GQE +  +    YR +   +L F + +R S+E+V   W+ E + H  P  PV +LVG K 
Sbjct: 61  GQERFRSITRSYYRNSVGVLLVFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKC 119

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           DL   +           VT  + E+L K +G  Y IE S++T  NV+  F
Sbjct: 120 DLESQRQ----------VTREEAEKLAKDLGMKY-IETSARTGDNVEEAF 158

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 12/116 (10%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLD 63
           GQE+++ +R    R  + F+L FS+  R S+E V K     L+       P++LVG K D
Sbjct: 59  GQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKAD 118

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119
           L   +           V+  +G+EL +Q+    YIE S+K + NV   F   ++V+
Sbjct: 119 LEHQRQ----------VSREEGQELARQLKIP-YIETSAKDRVNVDKAFHDLVRVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 54.9 bits (133), Expect = 3e-10
 Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 13/109 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG-VPVVLVGTKLD 63
           GQE Y  +    YRGA   +L + +  ++++ENV ++W+ EL+ ++   + ++LVG K D
Sbjct: 61  GQERYRAITSAYYRGAVGALLVYDITKKSTFENV-ERWLKELRDHADSNIVIMLVGNKSD 119

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           LR  +           V T + +   ++ G S +IE S+    NV+  F
Sbjct: 120 LRHLRA----------VPTEEAKAFAEKNGLS-FIETSALDGTNVEEAF 157

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 54.4 bits (131), Expect = 6e-10
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 12/109 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQEDY  +R   +R  + F+L FS+    S+  + +     L+      VP++LVG K D
Sbjct: 57  GQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCD 116

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           L + +           V+  +   L +Q G + Y+E S+KT+ NV  VF
Sbjct: 117 LEDKRQ----------VSVEEAANLAEQWGVN-YVETSAKTRANVDKVF 154

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 53.8 bits (129), Expect = 1e-09
 Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 16/125 (12%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLD 63
           GQE +  +    YRGA   +L + +  R ++ N L  W+ +  QH +  + ++L+G K D
Sbjct: 64  GQESFRSITRSYYRGAAGALLVYDITRRETF-NHLASWLEDARQHANANMTIMLIGNKCD 122

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123
           L    H  A       V+T +GE+  K+ G   ++E S+KT QNV+   +A IK   K  
Sbjct: 123 L---AHRRA-------VSTEEGEQFAKEHGL-IFMEASAKTAQNVE---EAFIKTAAKIY 168

Query: 124 QKQKE 128
           +K ++
Sbjct: 169 KKIQD 173

Length = 210

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 14/105 (13%)

Query: 18  RGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP 75
           R AD FVL +S+  R+S++ V  L + I E++     +PV+LVG K DL   +       
Sbjct: 71  RWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADLLHSRQ------ 124

Query: 76  GLVPVTTAQGEELRKQIGASYYIECS-SKTQQNVKAVFDAAIKVV 119
               V+T +G++L  ++G  ++ E S ++    V+ VF    + V
Sbjct: 125 ----VSTEEGQKLALELGCLFF-EVSAAENYLEVQNVFHELCREV 164

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 28/115 (24%), Positives = 63/115 (54%), Gaps = 14/115 (12%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKL 62
           G E +  +R L  +    F++ +SLV++ +++++  ++  I  ++ Y   VP++LVG K+
Sbjct: 58  GTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEK-VPIILVGNKV 116

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 117
           DL  ++           V++A+G  L ++ G   ++E S+K++  V  +F   ++
Sbjct: 117 DLESERE----------VSSAEGRALAEEWGCP-FMETSAKSKTMVNELFAEIVR 160

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 13/116 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +  +    YRGA   +L + + SR S+ N L  W+ + +   SP + ++LVG K D
Sbjct: 58  GQERFRSVTRSYYRGAAGALLVYDITSRESF-NALTNWLTDARTLASPDIVIILVGNKKD 116

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119
           L +D+           VT  +     ++ G   ++E S+ T +NV+  F    + +
Sbjct: 117 LEDDRE----------VTFLEASRFAQENGL-LFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 53.1 bits (127), Expect = 3e-09
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 12/109 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +N +    YR A   +L + +  + ++++ L KW+  +  Y S    ++LVG KLD
Sbjct: 58  GQERFNSITSAYYRSAKGIILVYDITKKETFDD-LPKWMKMIDKYASEDAELLLVGNKLD 116

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
              D+           +T  QGE+  +QI    + E S+K   NV  +F
Sbjct: 117 CETDRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 155

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 52.2 bits (125), Expect = 3e-09
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 15/117 (12%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE +  +    Y  A   +L F +  + +Y+N L KW  EL+ Y P +P ++V  K+DL
Sbjct: 58  GQERFQTMHASYYHKAHACILVFDVTRKITYKN-LSKWYEELREYRPEIPCIVVANKIDL 116

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
                         P  T +     ++     Y   S+    NV  +F  AIK+ + 
Sbjct: 117 D-------------PSVTQKKFNFAEKHNLPLYY-VSAADGTNVVKLFQDAIKLAVS 159

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 52.0 bits (125), Expect = 4e-09
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 13/118 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLD 63
           GQE +  +    YRGA   +L + +  R ++ + L  W+ +  QH +  + ++L+G K D
Sbjct: 62  GQESFRSITRSYYRGAAGALLVYDITRRETFNH-LTSWLEDARQHSNSNMTIMLIGNKCD 120

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           L   +           V+  +GE   ++ G   ++E S+KT  NV+  F    K +  
Sbjct: 121 LESRRE----------VSYEEGEAFAREHGL-IFMETSAKTASNVEEAFINTAKEIYD 167

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 51.7 bits (124), Expect = 4e-09
 Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 14/119 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKL 62
           G E +  +R L  +    FVL +S+ +++++ ++  L++ I  ++  +  VP++LVG K 
Sbjct: 58  GTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKC 116

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           DL +++           V   QG+ L +Q G   ++E S+K + NV  +F   ++ + +
Sbjct: 117 DLEDER----------VVGKEQGQNLARQWGC-AFLETSAKAKINVNEIFYDLVRQINR 164

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 51.3 bits (123), Expect = 6e-09
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 13/118 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKL 62
           G E +  +R L  +    F+L +S+ S AS   +  L++ +  ++  S  VP+VLVG K 
Sbjct: 58  GTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKA 116

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120
           DL +D+           V+   G  L +Q G   + E S++ + NV  VF   ++ +I
Sbjct: 117 DLEDDRQ----------VSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 49.5 bits (118), Expect = 3e-08
 Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 13/114 (11%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  G E +  +R L  +    F L +S+ ++ S+ ++  L++ I  ++     VP++LV
Sbjct: 54  LDTAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTED-VPMILV 112

Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL +++           V+  +G+ L +Q G   ++E S+K++ NV  +F
Sbjct: 113 GNKCDLEDERV----------VSKEEGQNLARQWGNCPFLETSAKSKINVDEIF 156

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 49.6 bits (118), Expect = 3e-08
 Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 13/109 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLD 63
           GQE Y  +    YR A    L + + S  SY++++ KW+ ++  Y+P GV  +L+G K D
Sbjct: 58  GQERYQTITKQYYRRAQGIFLVYDISSERSYQHIM-KWVSDVDEYAPEGVQKILIGNKAD 116

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
             + +           V   QG +L K+ G  ++ E S+ T +N+K  F
Sbjct: 117 EEQKRQ----------VGDEQGNKLAKEYGMDFF-ETSACTNKNIKESF 154

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 49.1 bits (117), Expect = 5e-08
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 13/109 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +  +    YR A+  +L + +    S+   L +W+ E++ Y +  V  +LVG K+D
Sbjct: 65  GQERFRSITQSYYRSANALILTYDITCEESFR-CLPEWLREIEQYANNKVITILVGNKID 123

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           L E +           V+  + EE        YY+E S+K   NV+ +F
Sbjct: 124 LAERRE----------VSQQRAEEFSDA-QDMYYLETSAKESDNVEKLF 161

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 49.2 bits (117), Expect = 6e-08
 Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 17/115 (14%)

Query: 16  SY-RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 74
           SY RGA   +L + + +R S++ +  +WI E+  ++PGVP +LVG +L L   +      
Sbjct: 74  SYSRGAQGIILVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAFKRQ----- 127

Query: 75  PGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI----KPPQK 125
                V T Q +   ++ G +++ E S     N+   F    ++V+    +PPQ 
Sbjct: 128 -----VATEQAQAYAERNGMTFF-EVSPLCNFNITESFTELARIVLMRHGRPPQS 176

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 48.7 bits (116), Expect = 8e-08
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 14/114 (12%)

Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGV--PVVLVG 59
           +  GQE ++ +    +    V  + + + +  S+ N   +WI  ++ +S G+  P VLVG
Sbjct: 59  DSAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNC-SRWINRVRTHSHGLHTPGVLVG 117

Query: 60  TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
            K DL + +           V  AQ + L +     +Y E S+K     +A F 
Sbjct: 118 NKCDLTDRRE----------VDAAQAQALAQANTLKFY-ETSAKEGVGYEAPFL 160

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 48.5 bits (116), Expect = 8e-08
 Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 14/108 (12%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE +  LR   Y      ++ F + SR +Y+NV   W  +L      +P+VL G K+D+
Sbjct: 58  GQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 116

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           ++ K           V   Q    RK+     Y E S+K+  N +  F
Sbjct: 117 KDRK-----------VKPKQITFHRKKN--LQYYEISAKSNYNFEKPF 151

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 48.0 bits (114), Expect = 1e-07
 Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 12/110 (10%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSPG-VPVVLVGTKL 62
           GQE +  +    YRGA   ++ F L   AS E+  ++W+ + L+   P  V + LVGTK 
Sbjct: 58  GQERFKCIASTYYRGAQAIIIVFDLTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKK 116

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           DL          P    +      +L +++ A Y+   S+ T +NV+  F
Sbjct: 117 DLSS--------PAQYALMEQDAIKLAREMKAEYW-AVSALTGENVRDFF 157

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKL 62
           G+E+      +  + AD  +L + L  R S   V  L  W+P L+     +PV+LVG KL
Sbjct: 57  GREELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 29/137 (21%)

Query: 6   QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ------HYSPGVPVVLVG 59
           QED   L     +  D +V+ +S+  R+S+E        EL+        +  +P++LVG
Sbjct: 59  QEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKA-----SELRIQLRRARQAEDIPIILVG 113

Query: 60  TKLDL---REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI 116
            K DL   RE             V+  +G           +IE S+  Q NV  +F+  +
Sbjct: 114 NKSDLVRSRE-------------VSVQEGRACAVVFDCK-FIETSAALQHNVDELFEGIV 159

Query: 117 KVV-IKPPQKQKEKKKK 132
           + V ++   K+K  ++ 
Sbjct: 160 RQVRLRRDSKEKNTRRM 176

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 46.5 bits (110), Expect = 7e-07
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 9/81 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLD 63
           GQE Y  +    YRGA   +L + +  R +++NV  +W+ EL+ H    + +++ G K D
Sbjct: 70  GQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQ-RWLRELRDHADSNIVIMMAGNKSD 128

Query: 64  LR-------EDKHYLADHPGL 77
           L        ED   LA+  GL
Sbjct: 129 LNHLRSVAEEDGQALAEKEGL 149

Length = 216

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 19/119 (15%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQ-------HYSPGVPV 55
           G   +  +R LS    DVF+L FSL +R S+E V  L++ I E +         +  +P+
Sbjct: 57  GNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPM 116

Query: 56  VLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 114
           V+ G K D    +           V   + E+L        Y E S+K   N+  +F A
Sbjct: 117 VICGNKADRDFPRE----------VQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRA 165

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 13/114 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +  +    YR A   +L + + +++S++N+ + W+ E+  Y    V ++L+G K  
Sbjct: 59  GQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNI-RAWLTEILEYAQSDVVIMLLGNK-- 115

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 117
                   AD  G   V    GE L K+ G   ++E S+KT  NV+  F A  K
Sbjct: 116 --------ADMSGERVVKREDGERLAKEYGVP-FMETSAKTGLNVELAFTAVAK 160

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 43.7 bits (103), Expect = 6e-06
 Identities = 29/145 (20%), Positives = 52/145 (35%), Gaps = 22/145 (15%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           G+E ++ L  +  RGA   +L + + +  S E +  +++      +      +VG KLDL
Sbjct: 53  GREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDL 112

Query: 65  REDKHYLADHPGLVP---------VTTAQGEELRKQI-------------GASYYIECSS 102
            E+                     VT    +   K+I                   E S+
Sbjct: 113 TEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSA 172

Query: 103 KTQQNVKAVFDAAIKVVIKPPQKQK 127
           KT  NV  +F+    +V+     Q+
Sbjct: 173 KTGYNVDELFEYLFNLVLPLILAQR 197

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 43.7 bits (103), Expect = 6e-06
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 14/132 (10%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE +  +    YRG    ++ + + +  S+ NV K+W+ E++     V  VLVG K   
Sbjct: 64  GQERFRTITSTYYRGTHGVIVVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNK--- 119

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI--KP 122
                   D P    V T    +   Q+G S + E S+K   NV+ +F+   ++V+  K 
Sbjct: 120 -------NDDPERKVVETEDAYKFAGQMGISLF-ETSAKENINVEEMFNCITELVLRAKK 171

Query: 123 PQKQKEKKKKQR 134
               K+++++Q 
Sbjct: 172 DNLAKQQQQQQN 183

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE +  LR   Y      ++ F + SR +Y+NV   W  ++      +P+VLVG K+D+
Sbjct: 67  GQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDV 125

Query: 65  REDK 68
           ++ +
Sbjct: 126 KDRQ 129

Length = 215

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 13/109 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +  +    YRGA   ++ + +  R++Y N L  W+ + ++  +P   + L+G K D
Sbjct: 60  GQERFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIFLIGNKAD 118

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           L   +           VT  + ++   + G   ++ECS+KT +NV+  F
Sbjct: 119 LEAQRD----------VTYEEAKQFADENGL-LFLECSAKTGENVEDAF 156

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 18/123 (14%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG------VPVVLV 58
           G  +Y  +R   Y+     +L + +  R S+E  L  W+ E++           + VV+ 
Sbjct: 58  GHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEA-LDSWLKEMKQEGGPHGNMENIVVVVC 116

Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118
             K+DL + +           V+  +G    +  G  Y+ E S+ T + V  +F      
Sbjct: 117 ANKIDLTKHRA----------VSEDEGRLWAESKGFKYF-ETSACTGEGVNEMFQTLFSS 165

Query: 119 VIK 121
           ++ 
Sbjct: 166 IVD 168

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 28/133 (21%), Positives = 62/133 (46%), Gaps = 19/133 (14%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQ ++  +R    R  + F++ +S+  R S++     K+ I  ++  +  +P+VLV
Sbjct: 55  LDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRL-TEDIPLVLV 113

Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118
           G K+DL + +           VTT +G  L ++    ++ E S+  +  +   F   ++ 
Sbjct: 114 GNKVDLEQQRQ----------VTTEEGRNLAREFNCPFF-ETSAALRFYIDDAFHGLVRE 162

Query: 119 VIKPPQKQKEKKK 131
           +     ++KE   
Sbjct: 163 I-----RRKESMP 170

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 16/120 (13%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSPGVPVVLVGTKLD 63
           GQE +  L P   R +   ++ + + +R S+EN   KWI + L      V + LVG K D
Sbjct: 38  GQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNERGKDVIIALVGNKTD 96

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123
           L +          L  VT  +G +  ++    ++ E S+K   N+K +F    K+  K P
Sbjct: 97  LGD----------LRKVTYEEGMQKAQEYNTMFH-ETSAKAGHNIKVLFK---KIAAKLP 142

Length = 176

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 40.9 bits (96), Expect = 6e-05
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE +  LR   Y      ++ F + +R +Y+NV   W  +L      +P+VL G K+D+
Sbjct: 71  GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDV 129

Query: 65  REDK 68
           +  +
Sbjct: 130 KNRQ 133

Length = 219

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 5   GQEDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTK 61
           GQE + + +    YR     V  + + + AS+ + L  WI E + +S    VP +LVG K
Sbjct: 60  GQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHS-LPSWIEECEQHSLPNEVPRILVGNK 118

Query: 62  LDLRE 66
            DLRE
Sbjct: 119 CDLRE 123

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE +  LR   Y      ++ F + +R +Y+NV   W  +L      +P+VL G K+D+
Sbjct: 53  GQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDV 111

Query: 65  REDK 68
           ++ K
Sbjct: 112 KDRK 115

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 13/114 (11%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  G   +  +R LS +  D F L +S+    S+E V  L++ I E++     VP+V+V
Sbjct: 52  LDTSGSYSFPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKE-DKFVPIVVV 110

Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K+D   ++   A              EL    G   ++E S+K  +NV  VF
Sbjct: 111 GNKIDSLAERQVEAA-------DALSTVELDWNNG---FVEASAKDNENVTEVF 154

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 30/152 (19%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ---HYSPG--VPVVLVG 59
           GQE +  +  + Y+GA   ++ F +   +++E VLK W  +L        G  +P +L+ 
Sbjct: 59  GQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLK-WKADLDSKVTLPNGEPIPALLLA 117

Query: 60  TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119
            K DL++++               Q ++  K+ G   + E S+K   N++      +K +
Sbjct: 118 NKCDLKKERLA---------KDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNI 168

Query: 120 IK---------PPQ------KQKEKKKKQRGC 136
           +K         P +      KQ+    K + C
Sbjct: 169 LKNDKGLQSPEPDEDNVIDLKQETTTSKSKSC 200

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 37.1 bits (86), Expect = 9e-04
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 12/102 (11%)

Query: 20  ADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGL 77
            D  +  FSL   AS++ V  +   +L  Y     +P++LVGT+          A +P +
Sbjct: 66  VDAVIFVFSLEDEASFQTV-YRLYHQLSSYRNISEIPLILVGTQ------DAISASNPRV 118

Query: 78  VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF-DAAIKV 118
             +  A+  +L   +    Y E  +    NV+ VF +AA K+
Sbjct: 119 --IDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 20/114 (17%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW--IPELQ-HYSPGVPVVLVGTK 61
           G   +  ++ LS      F+L +S+ S+ S E +   +  I E++ +    +P++LVG K
Sbjct: 58  GSHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNK 117

Query: 62  LD---LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
            D    RE             V++++G  L +    + ++E S+KT  NV+ +F
Sbjct: 118 CDESPSRE-------------VSSSEGAALARTWNCA-FMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.97
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.97
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.96
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.96
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.96
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.95
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.95
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.95
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.95
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.95
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.95
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.95
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.95
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.94
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.94
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.94
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.94
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.94
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.94
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.94
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.94
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.94
KOG0394	210	consensus Ras-related GTPase [General function pre	99.94
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.93
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.93
PTZ00099	176	rab6; Provisional	99.93
PTZ00369	189	Ras-like protein; Provisional	99.93
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.93
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.92
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.92
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.92
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.92
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.92
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.92
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.92
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.92
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.92
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.92
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.92
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.92
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.91
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.91
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.91
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.91
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.9
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.9
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.9
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.9
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.9
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.9
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.9
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.9
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.9
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.9
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.9
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.9
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.9
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.89
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.89
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.89
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.89
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.89
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.89
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.89
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.89
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.88
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.88
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.88
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.88
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.88
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.88
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.88
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.88
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.88
PLN03110	216	Rab GTPase; Provisional	99.88
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.88
KOG0395	196	consensus Ras-related GTPase [General function pre	99.87
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.87
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.87
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.87
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.87
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.87
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.87
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.86
PLN03108	210	Rab family protein; Provisional	99.86
PLN03118	211	Rab family protein; Provisional	99.86
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.86
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.86
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.86
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.85
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.85
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.85
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.85
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.85
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.84
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.84
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.84
PLN00223	181	ADP-ribosylation factor; Provisional	99.84
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.84
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.84
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.84
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.84
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.83
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.83
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.82
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.82
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.82
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.82
PTZ00133	182	ADP-ribosylation factor; Provisional	99.81
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.81
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.8
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.8
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.8
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.8
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.79
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.78
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.77
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.77
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.77
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.76
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.76
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.75
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.75
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.74
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.72
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.71
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.7
PLN00023	334	GTP-binding protein; Provisional	99.7
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.69
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.69
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.68
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.67
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.67
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.67
COG1100	219	GTPase SAR1 and related small G proteins [General	99.65
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.64
KOG1673	205	consensus Ras GTPases [General function prediction	99.64
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.64
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.62
PRK12299	335	obgE GTPase CgtA; Reviewed	99.62
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.62
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.61
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.6
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.59
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.59
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.59
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.57
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.56
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.56
PRK05433	600	GTP-binding protein LepA; Provisional	99.55
cd00881	189	GTP_translation_factor GTP translation factor fami	99.55
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.55
PRK03003	472	GTP-binding protein Der; Reviewed	99.54
PRK03003	472	GTP-binding protein Der; Reviewed	99.54
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.53
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.53
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.53
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.53
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.52
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.52
PRK04213	201	GTP-binding protein; Provisional	99.51
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.5
PRK15494	339	era GTPase Era; Provisional	99.5
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.49
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.48
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.47
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.47
PRK12297	424	obgE GTPase CgtA; Reviewed	99.47
CHL00189	742	infB translation initiation factor 2; Provisional	99.46
PRK05306	787	infB translation initiation factor IF-2; Validated	99.44
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.44
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.44
COG2229	187	Predicted GTPase [General function prediction only	99.44
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.44
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.43
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.42
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.41
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.41
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.4
PRK11058	426	GTPase HflX; Provisional	99.39
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.39
PRK00093	435	GTP-binding protein Der; Reviewed	99.38
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.38
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.37
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.37
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.36
PRK00089	292	era GTPase Era; Reviewed	99.36
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.34
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.34
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.34
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.33
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.33
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.32
PRK00093	435	GTP-binding protein Der; Reviewed	99.32
PRK12298	390	obgE GTPase CgtA; Reviewed	99.31
PRK12317	425	elongation factor 1-alpha; Reviewed	99.31
PRK04004	586	translation initiation factor IF-2; Validated	99.3
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.29
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.29
PRK12296	500	obgE GTPase CgtA; Reviewed	99.28
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.28
PRK10218	607	GTP-binding protein; Provisional	99.26
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.26
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.26
PRK14845	1049	translation initiation factor IF-2; Provisional	99.25
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.24
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.24
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.23
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.22
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.22
PRK00098	298	GTPase RsgA; Reviewed	99.21
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.21
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.2
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.19
PRK12736	394	elongation factor Tu; Reviewed	99.17
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.16
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.16
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.16
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.16
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.15
COG1160	444	Predicted GTPases [General function prediction onl	99.14
PRK12289	352	GTPase RsgA; Reviewed	99.13
COG1160	444	Predicted GTPases [General function prediction onl	99.13
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.11
COG1159	298	Era GTPase [General function prediction only]	99.11
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.11
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.09
PRK12735	396	elongation factor Tu; Reviewed	99.08
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.07
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.05
PRK09866	741	hypothetical protein; Provisional	99.04
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.04
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.03
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.03
PRK13351	687	elongation factor G; Reviewed	99.03
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.03
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.02
PRK12288	347	GTPase RsgA; Reviewed	99.02
PRK13768	253	GTPase; Provisional	99.0
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.97
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.94
PRK12740	668	elongation factor G; Reviewed	98.92
PLN00043	447	elongation factor 1-alpha; Provisional	98.91
KOG1145	683	consensus Mitochondrial translation initiation fac	98.9
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.89
CHL00071	409	tufA elongation factor Tu	98.89
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.88
PRK00049	396	elongation factor Tu; Reviewed	98.87
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.85
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.82
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.82
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.82
PLN03126	478	Elongation factor Tu; Provisional	98.79
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.79
PLN03127	447	Elongation factor Tu; Provisional	98.79
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.78
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.77
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.76
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.73
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.72
COG0486	454	ThdF Predicted GTPase [General function prediction	98.71
PRK12739	691	elongation factor G; Reviewed	98.69
PTZ00141	446	elongation factor 1- alpha; Provisional	98.67
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	98.64
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.64
COG2262	411	HflX GTPases [General function prediction only]	98.6
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.58
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.58
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.56
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.56
PRK13796	365	GTPase YqeH; Provisional	98.56
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	98.55
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	98.55
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.5
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.48
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.44
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	98.43
COG0218	200	Predicted GTPase [General function prediction only	98.41
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.39
COG0536	369	Obg Predicted GTPase [General function prediction	98.33
PRK01889	356	GTPase RsgA; Reviewed	98.3
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.27
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.26
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.25
PRK00007	693	elongation factor G; Reviewed	98.23
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.2
PRK07560	731	elongation factor EF-2; Reviewed	98.15
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.15
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.13
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.09
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	98.09
COG1162	301	Predicted GTPases [General function prediction onl	98.08
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	98.07
COG1084	346	Predicted GTPase [General function prediction only	98.02
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	98.01
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.0
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.0
PRK09602	396	translation-associated GTPase; Reviewed	97.98
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.96
COG0050	394	TufB GTPases - translation elongation factors [Tra	97.93
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	97.89
COG3596	296	Predicted GTPase [General function prediction only	97.89
KOG3886	295	consensus GTP-binding protein [Signal transduction	97.86
PLN00116	843	translation elongation factor EF-2 subunit; Provis	97.85
PTZ00416	836	elongation factor 2; Provisional	97.76
KOG0090	238	consensus Signal recognition particle receptor, be	97.71
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.63
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	97.63
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.61
COG5258	527	GTPBP1 GTPase [General function prediction only]	97.6
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	97.57
KOG0460	449	consensus Mitochondrial translation elongation fac	97.56
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	97.5
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	97.4
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	97.37
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	97.36
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	97.36
KOG0466	466	consensus Translation initiation factor 2, gamma s	97.32
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.27
KOG0082	354	consensus G-protein alpha subunit (small G protein	97.27
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	97.26
KOG0461	522	consensus Selenocysteine-specific elongation facto	97.26
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.25
COG1161	322	Predicted GTPases [General function prediction onl	97.24
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	97.2
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	97.09
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	97.01
KOG1143	591	consensus Predicted translation elongation factor	97.0
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	96.9
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	96.89
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.68
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	96.61
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	96.57
cd03110	179	Fer4_NifH_child This protein family's function is	96.51
KOG2484	435	consensus GTPase [General function prediction only	96.43
KOG0465	721	consensus Mitochondrial elongation factor [Transla	96.41
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.34
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	96.34
KOG0467	887	consensus Translation elongation factor 2/ribosome	96.13
COG1163	365	DRG Predicted GTPase [General function prediction	96.03
KOG3887	347	consensus Predicted small GTPase involved in nucle	95.44
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	95.35
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	95.25
KOG2423	572	consensus Nucleolar GTPase [General function predi	95.24
KOG2486	320	consensus Predicted GTPase [General function predi	95.16
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	95.0
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	94.72
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	94.51
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	94.21
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	94.12
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	94.12
KOG0410	410	consensus Predicted GTP binding protein [General f	93.38
KOG4273	418	consensus Uncharacterized conserved protein [Funct	93.24
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	93.08
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	92.94
KOG0099	379	consensus G protein subunit Galphas, small G prote	92.77
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	92.65
COG1149	284	MinD superfamily P-loop ATPase containing an inser	92.43
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	92.32
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	92.02
KOG0464	753	consensus Elongation factor G [Translation, riboso	91.18
COG1163	365	DRG Predicted GTPase [General function prediction	90.41
PHA02518	211	ParA-like protein; Provisional	90.38
TIGR00064	272	ftsY signal recognition particle-docking protein F	89.66
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	88.1
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	87.52
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	87.49
PRK14974	336	cell division protein FtsY; Provisional	86.72
PF14331	266	ImcF-related_N: ImcF-related N-terminal domain	86.54
PRK10416	318	signal recognition particle-docking protein FtsY;	86.42
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	82.62
PTZ00258	390	GTP-binding protein; Provisional	82.41
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	82.29
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	81.97
cd02036	179	MinD Bacterial cell division requires the formatio	81.86
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	81.3
PF08438	109	MMR_HSR1_C: GTPase of unknown function C-terminal;	80.89

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.1e-30  Score=179.85  Aligned_cols=111  Identities=32%  Similarity=0.615  Sum_probs=104.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||||||+++..+||++|+|+|+|||+|+..||+.+ ..|+.+++++. +++|.+|||||+|+.+...          
T Consensus        63 WDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~----------  131 (205)
T KOG0084|consen   63 WDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNV-KRWIQEIDRYASENVPKLLVGNKCDLTEKRV----------  131 (205)
T ss_pred             eeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhH-HHHHHHhhhhccCCCCeEEEeeccccHhhee----------
Confidence            99999999999999999999999999999999999999 99999999998 4789999999999998876          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      |..++++.++..+++..++++||+++.||+++|..|+..+...
T Consensus       132 v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~  174 (205)
T KOG0084|consen  132 VSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQR  174 (205)
T ss_pred             cCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHh
Confidence            4899999999999984499999999999999999999988654

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.2e-30  Score=177.79  Aligned_cols=112  Identities=31%  Similarity=0.589  Sum_probs=103.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||||+|.++.++||++|+++|+|||+++.+||..+ +.|+.++.+.. +++-+.|||||+|+.+.+.          
T Consensus        59 WDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~~R~----------  127 (200)
T KOG0092|consen   59 WDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKA-KNWVKELQRQASPNIVIALVGNKADLLERRE----------  127 (200)
T ss_pred             EEcCCcccccccccceecCCcEEEEEEecccHHHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhhccc----------
Confidence            99999999999999999999999999999999999998 99999999887 4677889999999998554          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  124 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  124 (150)
                      |..+++..++...++ .|+++||+++.||+++|..|.+.++....
T Consensus       128 V~~~ea~~yAe~~gl-l~~ETSAKTg~Nv~~if~~Ia~~lp~~~~  171 (200)
T KOG0092|consen  128 VEFEEAQAYAESQGL-LFFETSAKTGENVNEIFQAIAEKLPCSDP  171 (200)
T ss_pred             ccHHHHHHHHHhcCC-EEEEEecccccCHHHHHHHHHHhccCccc
Confidence            589999999999997 99999999999999999999999986543

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8.2e-30  Score=177.60  Aligned_cols=113  Identities=28%  Similarity=0.559  Sum_probs=105.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|||+|..+..+||++|+++++|||+++..||+++ ..|++.|.++.+ ++|++|||||+|+...+.          
T Consensus        66 WDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni-~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~----------  134 (207)
T KOG0078|consen   66 WDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENI-RNWIKNIDEHASDDVVKILVGNKCDLEEKRQ----------  134 (207)
T ss_pred             EEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHH-HHHHHHHHhhCCCCCcEEEeecccccccccc----------
Confidence            99999999999999999999999999999999999999 789999999996 899999999999987654          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcc
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQK  125 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  125 (150)
                      |+.+.++++|..+|+ .|+|+||++|.||+++|..|++.+..+...
T Consensus       135 V~~e~ge~lA~e~G~-~F~EtSAk~~~NI~eaF~~La~~i~~k~~~  179 (207)
T KOG0078|consen  135 VSKERGEALAREYGI-KFFETSAKTNFNIEEAFLSLARDILQKLED  179 (207)
T ss_pred             ccHHHHHHHHHHhCC-eEEEccccCCCCHHHHHHHHHHHHHhhcch
Confidence            699999999999998 999999999999999999999999865443

>cd04133 Rop_like Rop subfamily

Probab=99.96  E-value=3.2e-28  Score=169.86  Aligned_cols=123  Identities=85%  Similarity=1.326  Sum_probs=105.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||+|+++|..+++.++++||++|+|||++++.||+.+...|++.+.+..++.|++|||||+|+.+.......+.+...+
T Consensus        54 ~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v  133 (176)
T cd04133          54 WDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPI  133 (176)
T ss_pred             EECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCC
Confidence            99999999999999999999999999999999999997468999998877789999999999997643211122233457


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      ..+++..+++.++..+++|+||+++.||+++|+.+++.+.+++
T Consensus       134 ~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~~~~  176 (176)
T cd04133         134 TTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVLQPP  176 (176)
T ss_pred             CHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHHhcCC
Confidence            8899999999999757999999999999999999999876653

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd01875 RhoG RhoG subfamily

Probab=99.96  E-value=5.8e-28  Score=170.48  Aligned_cols=123  Identities=49%  Similarity=0.830  Sum_probs=102.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||+||++|..+++.|+++||++|+|||++++.||+.+...|...+.+..+++|++|||||.|+.+......  ......
T Consensus        56 ~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~  135 (191)
T cd01875          56 WDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQA  135 (191)
T ss_pred             EECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCC
Confidence            999999999999999999999999999999999999983369888887767899999999999965421100  000112


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      .+..+++..+++.++..+++++||++|.||+++|..+++.+..+.
T Consensus       136 ~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~~~  180 (191)
T cd01875         136 PITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPT  180 (191)
T ss_pred             CCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhccc
Confidence            357788999999998548999999999999999999999998754

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04121 Rab40 Rab40 subfamily

Probab=99.95  E-value=5.4e-28  Score=170.43  Aligned_cols=111  Identities=26%  Similarity=0.507  Sum_probs=102.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||+|+++|..+++.|+++||++|+|||++++.||+.+ ..|++++.+..+++|+||||||.|+.....          +
T Consensus        60 wDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~~~~----------v  128 (189)
T cd04121          60 WDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAFKRQ----------V  128 (189)
T ss_pred             EeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchhccC----------C
Confidence            99999999999999999999999999999999999998 899999988778999999999999976433          4


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      ..++++.+++..++ +++++||++|.||+++|+.+++.+..+.
T Consensus       129 ~~~~~~~~a~~~~~-~~~e~SAk~g~~V~~~F~~l~~~i~~~~  170 (189)
T cd04121         129 ATEQAQAYAERNGM-TFFEVSPLCNFNITESFTELARIVLMRH  170 (189)
T ss_pred             CHHHHHHHHHHcCC-EEEEecCCCCCCHHHHHHHHHHHHHHhc
Confidence            78899999999997 9999999999999999999999887543

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.95  E-value=2.7e-28  Score=163.29  Aligned_cols=114  Identities=32%  Similarity=0.649  Sum_probs=105.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||||+|+.++++||++|.++|+|||++.+++|..+ +.|++++..+.  +++-.++||||+|..+.+.         
T Consensus        65 WDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes~R~---------  134 (209)
T KOG0080|consen   65 WDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKESERV---------  134 (209)
T ss_pred             EeccchHhhhccCHhHhccCceeEEEEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchhccc---------
Confidence            99999999999999999999999999999999999998 99999999887  4677889999999765544         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcch
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ  126 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  126 (150)
                       |..++...+++.+++ -|+++||++.+||...|++++..|++.|..-
T Consensus       135 -V~reEG~kfAr~h~~-LFiE~SAkt~~~V~~~FeelveKIi~tp~l~  180 (209)
T KOG0080|consen  135 -VDREEGLKFARKHRC-LFIECSAKTRENVQCCFEELVEKIIETPSLW  180 (209)
T ss_pred             -ccHHHHHHHHHhhCc-EEEEcchhhhccHHHHHHHHHHHHhcCcchh
Confidence             699999999999998 9999999999999999999999999876543

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=5.6e-28  Score=166.34  Aligned_cols=112  Identities=31%  Similarity=0.522  Sum_probs=103.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC--CCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||||+|+.+.++|+++++++|+|||+++..||++. ..|++.+.....  ++-++|||||.||.+...         
T Consensus        76 WDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t-~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq---------  145 (221)
T KOG0094|consen   76 WDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENT-SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ---------  145 (221)
T ss_pred             EecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHH-HHHHHHHHhccCCCceEEEEEcccccccchhh---------
Confidence            99999999999999999999999999999999999999 999999998763  477889999999998866         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  124 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  124 (150)
                       +..++....++.++. .|+++||+.|.||.++|..++..+++...
T Consensus       146 -vs~eEg~~kAkel~a-~f~etsak~g~NVk~lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  146 -VSIEEGERKAKELNA-EFIETSAKAGENVKQLFRRIAAALPGMEV  189 (221)
T ss_pred             -hhHHHHHHHHHHhCc-EEEEecccCCCCHHHHHHHHHHhccCccc
Confidence             488999999999997 99999999999999999999999887654

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=6.3e-28  Score=167.89  Aligned_cols=109  Identities=29%  Similarity=0.583  Sum_probs=103.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||||+|+.++..||++|.|+++|||++...+|+.+ .+|+.+++.+. ++++++|||||+||.+.+.          
T Consensus        68 WDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~lra----------  136 (222)
T KOG0087|consen   68 WDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNHLRA----------  136 (222)
T ss_pred             ecccchhhhccccchhhcccceeEEEEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhhccc----------
Confidence            99999999999999999999999999999999999998 99999999998 6899999999999988655          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      |..+++..++...++ .++++||.++.|++++|..++..|..
T Consensus       137 V~te~~k~~Ae~~~l-~f~EtSAl~~tNVe~aF~~~l~~I~~  177 (222)
T KOG0087|consen  137 VPTEDGKAFAEKEGL-FFLETSALDATNVEKAFERVLTEIYK  177 (222)
T ss_pred             cchhhhHhHHHhcCc-eEEEecccccccHHHHHHHHHHHHHH
Confidence            599999999999997 99999999999999999999988864

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=7.2e-28  Score=159.12  Aligned_cols=110  Identities=31%  Similarity=0.638  Sum_probs=104.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|||+|+.+...|+++|+++|+|||+++.+||..+ +.|.-.|.... .+.|+|+|+||||+.+++.          
T Consensus        75 wDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~eRv----------  143 (193)
T KOG0093|consen   75 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDSERV----------  143 (193)
T ss_pred             EecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCcccee----------
Confidence            99999999999999999999999999999999999998 99999999887 5899999999999988876          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      |+.+.+++++..+|. .|||+||+.+.|++++|+.++..|...
T Consensus       144 is~e~g~~l~~~LGf-efFEtSaK~NinVk~~Fe~lv~~Ic~k  185 (193)
T KOG0093|consen  144 ISHERGRQLADQLGF-EFFETSAKENINVKQVFERLVDIICDK  185 (193)
T ss_pred             eeHHHHHHHHHHhCh-HHhhhcccccccHHHHHHHHHHHHHHH
Confidence            489999999999998 999999999999999999999988764

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.95  E-value=4.1e-27  Score=170.44  Aligned_cols=122  Identities=32%  Similarity=0.629  Sum_probs=102.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||+|+++|..+++.|+++||++|+|||++++.||+.+...|+..+.+..++.|++|||||+|+........  ......
T Consensus        66 wDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~  145 (232)
T cd04174          66 WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQA  145 (232)
T ss_pred             EeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCC
Confidence            999999999999999999999999999999999999854899999998778899999999999864311100  000123


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCC-CHHHHHHHHHHHHhCC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQ-NVKAVFDAAIKVVIKP  122 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~l~~~~~~~  122 (150)
                      .|..+++.++++.+++..|+++||++|. ||+++|..+++.+.+.
T Consensus       146 ~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         146 PISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             cCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence            4788999999999997579999999998 8999999999988654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=9.1e-28  Score=164.20  Aligned_cols=109  Identities=27%  Similarity=0.544  Sum_probs=102.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|||.|++++++||++|.|+|+|||++..+||.++ ..|+.+++++. +|+-++|+|||+|+...+.          
T Consensus        60 wDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL-~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~----------  128 (216)
T KOG0098|consen   60 WDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHL-TSWLEDARQHSNENMVIMLIGNKSDLEARRE----------  128 (216)
T ss_pred             EecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHH-HHHHHHHHHhcCCCcEEEEEcchhhhhcccc----------
Confidence            99999999999999999999999999999999999998 99999999995 8999999999999987654          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      |..++.+.||+++++ .++++||+++.||+++|....+.+..
T Consensus       129 Vs~EEGeaFA~ehgL-ifmETSakt~~~VEEaF~nta~~Iy~  169 (216)
T KOG0098|consen  129 VSKEEGEAFAREHGL-IFMETSAKTAENVEEAFINTAKEIYR  169 (216)
T ss_pred             ccHHHHHHHHHHcCc-eeehhhhhhhhhHHHHHHHHHHHHHH
Confidence            699999999999997 99999999999999999999888754

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.95  E-value=1.3e-27  Score=159.83  Aligned_cols=109  Identities=30%  Similarity=0.642  Sum_probs=102.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||||+|..+.+.||++++++++|||++|..||+.+ ..|+.++++... .+.+++||||+|+-+++.          
T Consensus        67 WDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKV-KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~----------  135 (218)
T KOG0088|consen   67 WDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKV-KNWVLELRTMLGNEIELLIVGNKIDLEEERQ----------  135 (218)
T ss_pred             eeccchHhhhccCceEEeCCCceEEEEeccchHHHHHH-HHHHHHHHHHhCCeeEEEEecCcccHHHhhh----------
Confidence            99999999999999999999999999999999999999 999999998874 588999999999988766          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      |+.+++..+++.-|. .|+++||+.+.||.++|..|...+++
T Consensus       136 Vt~qeAe~YAesvGA-~y~eTSAk~N~Gi~elFe~Lt~~MiE  176 (218)
T KOG0088|consen  136 VTRQEAEAYAESVGA-LYMETSAKDNVGISELFESLTAKMIE  176 (218)
T ss_pred             hhHHHHHHHHHhhch-hheecccccccCHHHHHHHHHHHHHH
Confidence            599999999999996 99999999999999999999988865

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.94  E-value=1.1e-26  Score=162.98  Aligned_cols=121  Identities=36%  Similarity=0.661  Sum_probs=102.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||+|+++|..+++.++++||++|+|||++++.||+.+...|++.+.+..++.|++|||||+|+........  ......
T Consensus        58 wDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~  137 (182)
T cd04172          58 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQT  137 (182)
T ss_pred             EECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCC
Confidence            999999999999999999999999999999999999975799999998888899999999999864311000  000123


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCC-HHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQN-VKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~~~~~l~~~~~~  121 (150)
                      .|..+++.++++.+++.+|+++||+++.| |.++|..+++..+.
T Consensus       138 ~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~~  181 (182)
T cd04172         138 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  181 (182)
T ss_pred             CCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHhc
Confidence            47889999999999965899999999998 99999999986553

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.94  E-value=5.8e-27  Score=163.67  Aligned_cols=124  Identities=57%  Similarity=0.947  Sum_probs=113.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc--ccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY--LADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~--~~~~~~~~   78 (150)
                      |||||||+|..+++..|.++|.|++||++.++.||+++...|++++.++++++|+||||+|.|+..+...  ..++....
T Consensus        58 wDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~  137 (198)
T KOG0393|consen   58 WDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLE  137 (198)
T ss_pred             eecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999854322  22344556


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  124 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  124 (150)
                      .|..+++..+++..|...|+||||++..|+.++|+..++..+.+++
T Consensus       138 ~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  138 PVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             cccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence            7899999999999998799999999999999999999999998775

>cd04131 Rnd Rnd subfamily

Probab=99.94  E-value=3.2e-26  Score=160.00  Aligned_cols=120  Identities=36%  Similarity=0.659  Sum_probs=101.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||+|+++|..+++.++++||++|+|||++++.||+.+...|+..+.+..++.|+++||||+|+........  ++....
T Consensus        54 wDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~  133 (178)
T cd04131          54 WDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQA  133 (178)
T ss_pred             EECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCC
Confidence            999999999999999999999999999999999999965799999998888999999999999865211000  001123


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCC-HHHHHHHHHHHHh
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQN-VKAVFDAAIKVVI  120 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~~~~~l~~~~~  120 (150)
                      .|..+++.++++.+++.+|+++||++|.+ |+++|..+++..+
T Consensus       134 ~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         134 PVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL  176 (178)
T ss_pred             CCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence            47889999999999976899999999995 9999999998654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.94  E-value=3e-26  Score=160.69  Aligned_cols=133  Identities=47%  Similarity=0.781  Sum_probs=110.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|..+++.++++||++|+|||++++.||+.+...|+..+....++.|+++|+||+|+.....      ....+
T Consensus        54 ~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------~~~~v  127 (187)
T cd04132          54 WDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN------LDRKV  127 (187)
T ss_pred             EECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc------ccCCc
Confidence            999999999999999999999999999999999999984569888877667899999999999865431      11235


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcch-hhhhccCCCceee
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ-KEKKKKQRGCLLN  139 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~-~~~~~~~~~c~~~  139 (150)
                      ...++.+++..++..+++++||++|.|+.++|..+++.+....... ..+++++.+|.+|
T Consensus       128 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~~~~~~~~~~~~c~~~  187 (187)
T cd04132         128 TPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKEGKAIFKKKKKKRKCVVL  187 (187)
T ss_pred             CHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence            6788889999998768999999999999999999999998765443 3344455666654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04134 Rho3 Rho3 subfamily

Probab=99.94  E-value=5.6e-26  Score=160.02  Aligned_cols=135  Identities=36%  Similarity=0.596  Sum_probs=108.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||+|+++|..+++.+++++|++|+|||++++.+|+.+...|+..+....++.|+++|+||+|+........  ......
T Consensus        53 ~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~  132 (189)
T cd04134          53 WDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKH  132 (189)
T ss_pred             EECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCC
Confidence            999999999999999999999999999999999999873469999988777899999999999976432100  001111


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcchhhhhccCCCceee
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN  139 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~c~~~  139 (150)
                      .+..+++..+++..+..+++++||++|.|++++|..+++.++.+..    ..++++.|+||
T Consensus       133 ~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~~~----~~~~~~~~~~~  189 (189)
T cd04134         133 TISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALNVRP----PHPHSSACTIA  189 (189)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhcccc----cCcCCCcceeC
Confidence            3466778888888874489999999999999999999999986543    44556778775

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.94  E-value=5.1e-27  Score=155.28  Aligned_cols=110  Identities=31%  Similarity=0.548  Sum_probs=103.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||||+|+.+...||++.+++++|||+++.+||.++ .+|+++++..++.+|-++||||.|+++.+.          |
T Consensus        62 wDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv-~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv----------V  130 (198)
T KOG0079|consen   62 WDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNV-KRWLEEIRNNCDSVPKVLVGNKNDDPERRV----------V  130 (198)
T ss_pred             eecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhH-HHHHHHHHhcCccccceecccCCCCcccee----------e
Confidence            99999999999999999999999999999999999999 999999999999999999999999987665          5


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ..++++.|+..+++ .+|++||+.+.|++.+|.-|.++.+.-
T Consensus       131 ~t~dAr~~A~~mgi-e~FETSaKe~~NvE~mF~cit~qvl~~  171 (198)
T KOG0079|consen  131 DTEDARAFALQMGI-ELFETSAKENENVEAMFHCITKQVLQA  171 (198)
T ss_pred             ehHHHHHHHHhcCc-hheehhhhhcccchHHHHHHHHHHHHH
Confidence            88999999999998 999999999999999999998877643

>cd04144 Ras2 Ras2 subfamily

Probab=99.94  E-value=2.2e-26  Score=162.19  Aligned_cols=109  Identities=31%  Similarity=0.601  Sum_probs=96.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccccccccCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPG   76 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~D~~~~~~~~~~~~~   76 (150)
                      |||||+++|..+++.+++++|++|+|||++++.||+.+ ..|+..+....    ++.|+++|+||+|+.....       
T Consensus        52 ~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~-------  123 (190)
T cd04144          52 LDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKVYERE-------  123 (190)
T ss_pred             EECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCCEEEEEEChhccccCc-------
Confidence            99999999999999999999999999999999999998 88988886543    4689999999999875433       


Q ss_pred             CCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           77 LVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                         +...+...+++.+++ +++++||++|.|++++|+.+++.+..
T Consensus       124 ---v~~~~~~~~~~~~~~-~~~e~SAk~~~~v~~l~~~l~~~l~~  164 (190)
T cd04144         124 ---VSTEEGAALARRLGC-EFIEASAKTNVNVERAFYTLVRALRQ  164 (190)
T ss_pred             ---cCHHHHHHHHHHhCC-EEEEecCCCCCCHHHHHHHHHHHHHH
Confidence               366777888888887 89999999999999999999988753

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04120 Rab12 Rab12 subfamily

Probab=99.94  E-value=3.2e-26  Score=162.90  Aligned_cols=110  Identities=28%  Similarity=0.602  Sum_probs=98.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..+++.|+++||++|+|||++++.||+.+ ..|+..+.+.. +++|+++||||+|+.....          
T Consensus        54 wDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l-~~w~~~i~~~~~~~~piilVgNK~DL~~~~~----------  122 (202)
T cd04120          54 WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------  122 (202)
T ss_pred             EeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------
Confidence            99999999999999999999999999999999999998 89999888765 5799999999999975433          


Q ss_pred             cCHHHHHHHHHHc-CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           80 VTTAQGEELRKQI-GASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        80 v~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      +...++.++++.. ++ .++++||++|.||+++|..+++.+...
T Consensus       123 v~~~~~~~~a~~~~~~-~~~etSAktg~gV~e~F~~l~~~~~~~  165 (202)
T cd04120         123 ISRQQGEKFAQQITGM-RFCEASAKDNFNVDEIFLKLVDDILKK  165 (202)
T ss_pred             cCHHHHHHHHHhcCCC-EEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence            5778888898885 65 899999999999999999999988654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.94  E-value=4.8e-26  Score=164.00  Aligned_cols=122  Identities=39%  Similarity=0.682  Sum_probs=103.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||+|+++|..+++.+++++|++|+|||++++.+|+.+...|...+....+++|++|||||+|+........  ......
T Consensus        54 wDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~  133 (222)
T cd04173          54 WDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLI  133 (222)
T ss_pred             EeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCC
Confidence            999999999999999999999999999999999999986789888887778999999999999965421111  011223


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCC-HHHHHHHHHHHHhCC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQN-VKAVFDAAIKVVIKP  122 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~~~~~l~~~~~~~  122 (150)
                      +|..+++..+++..+..+|+||||+++.+ |.++|..++...+.+
T Consensus       134 pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~  178 (222)
T cd04173         134 PVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGR  178 (222)
T ss_pred             ccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhc
Confidence            57889999999999966999999999885 999999999987654

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.94  E-value=3.4e-26  Score=156.21  Aligned_cols=114  Identities=28%  Similarity=0.476  Sum_probs=102.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-----CCCEEEEeeCCCcccccccccCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-----GVPVVLVGTKLDLREDKHYLADHP   75 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~D~~~~~~~~~~~~   75 (150)
                      |||||||+|.+|.-.+|++||++++|||++++.||+.+ ..|.+++...++     ..|+||+|||+|+.....      
T Consensus        63 WDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~------  135 (210)
T KOG0394|consen   63 WDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKS------  135 (210)
T ss_pred             EecccHHHhhhcccceecCCceEEEEeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCCcc------
Confidence            99999999999999999999999999999999999998 999998887662     589999999999876321      


Q ss_pred             CCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           76 GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                        +-|+...++.||+..|-.||||+|||.+.||+++|..+++..+...
T Consensus       136 --r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E  181 (210)
T KOG0394|consen  136 --RQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANE  181 (210)
T ss_pred             --ceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhcc
Confidence              2268899999999998779999999999999999999999988664

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.93  E-value=9.1e-26  Score=151.58  Aligned_cols=109  Identities=28%  Similarity=0.522  Sum_probs=99.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCC-EEEEeeCCCcccccccccCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVP-VVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~p-iilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      |||||||+|++++.+||+++-++++|||+++..||+++ +.|+.+...+.  |..+ +.|||.|+|+.+.+.        
T Consensus        63 wdtagqerfrsitksyyrnsvgvllvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq--------  133 (213)
T KOG0091|consen   63 WDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ--------  133 (213)
T ss_pred             eeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhhhcc--------
Confidence            99999999999999999999999999999999999999 99999888765  3444 579999999987655        


Q ss_pred             CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                        |+.++++.++..+|+ .|+|+||++|.||++.|..+.+.+..
T Consensus       134 --Vt~EEaEklAa~hgM-~FVETSak~g~NVeEAF~mlaqeIf~  174 (213)
T KOG0091|consen  134 --VTAEEAEKLAASHGM-AFVETSAKNGCNVEEAFDMLAQEIFQ  174 (213)
T ss_pred             --ccHHHHHHHHHhcCc-eEEEecccCCCcHHHHHHHHHHHHHH
Confidence              699999999999998 99999999999999999999887753

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.93  E-value=1.5e-26  Score=150.89  Aligned_cols=109  Identities=31%  Similarity=0.584  Sum_probs=101.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|||+|++..-.||++||+.+++||+.+..||++. +.|+.+|.++. ..+.++++|||+|+..++.          
T Consensus        52 wdtagqerfrsvt~ayyrda~allllydiankasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~er~----------  120 (192)
T KOG0083|consen   52 WDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAHERA----------  120 (192)
T ss_pred             eeccchHHHhhhhHhhhcccceeeeeeecccchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccchhhc----------
Confidence            99999999999999999999999999999999999999 99999999887 4688999999999987765          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      |..++...+++.|++ ||+++||++|.|++..|-.+++.+.+
T Consensus       121 v~~ddg~kla~~y~i-pfmetsaktg~nvd~af~~ia~~l~k  161 (192)
T KOG0083|consen  121 VKRDDGEKLAEAYGI-PFMETSAKTGFNVDLAFLAIAEELKK  161 (192)
T ss_pred             cccchHHHHHHHHCC-CceeccccccccHhHHHHHHHHHHHH
Confidence            488999999999998 99999999999999999999987754

>PTZ00099 rab6; Provisional

Probab=99.93  E-value=2.8e-25  Score=154.99  Aligned_cols=111  Identities=26%  Similarity=0.454  Sum_probs=99.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..+++.|+++||++|+|||++++.+|+++ ..|+..+.+.. +++|++||+||+|+.....          
T Consensus        34 wDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~~~~~~piilVgNK~DL~~~~~----------  102 (176)
T PTZ00099         34 WDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNERGKDVIIALVGNKTDLGDLRK----------  102 (176)
T ss_pred             EECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccC----------
Confidence            99999999999999999999999999999999999998 89998887654 5799999999999875432          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      +...++..+++.+++ .++++||++|.||+++|+.|++.+.+.+
T Consensus       103 v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099        103 VTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            477788888888887 8999999999999999999999987644

>PTZ00369 Ras-like protein; Provisional

Probab=99.93  E-value=8.1e-25  Score=154.07  Aligned_cols=110  Identities=31%  Similarity=0.565  Sum_probs=97.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..|++++|++|+|||++++.+|+.+ ..|...+.+..  ++.|+++|+||+|+.+...         
T Consensus        58 ~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~---------  127 (189)
T PTZ00369         58 LDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKCDLDSERQ---------  127 (189)
T ss_pred             EeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc---------
Confidence            99999999999999999999999999999999999998 88988887654  4789999999999865433         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                       +...++..+++.++. +++++||++|.||.++|..+++.+...
T Consensus       128 -i~~~~~~~~~~~~~~-~~~e~Sak~~~gi~~~~~~l~~~l~~~  169 (189)
T PTZ00369        128 -VSTGEGQELAKSFGI-PFLETSAKQRVNVDEAFYELVREIRKY  169 (189)
T ss_pred             -cCHHHHHHHHHHhCC-EEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence             366777888888887 999999999999999999999888643

>cd04126 Rab20 Rab20 subfamily

Probab=99.93  E-value=3.7e-25  Score=159.24  Aligned_cols=120  Identities=24%  Similarity=0.369  Sum_probs=97.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCccccccc---------
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHY---------   70 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~---------   70 (150)
                      |||+|+++|..+++.|++++|++|+|||++++.||+.+ ..|...+.+.. +++|+|+||||+|+.+....         
T Consensus        49 wDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l-~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~  127 (220)
T cd04126          49 WDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEEL-EDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGD  127 (220)
T ss_pred             EeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccc
Confidence            99999999999999999999999999999999999998 66666665543 57999999999999752110         


Q ss_pred             ccCCCCCCccCHHHHHHHHHHcCC-------------cEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           71 LADHPGLVPVTTAQGEELRKQIGA-------------SYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~-------------~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      .......+.|..+++..+++..+.             .+|+++||++|.||+++|..+++.++.
T Consensus       128 ~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~  191 (220)
T cd04126         128 RVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP  191 (220)
T ss_pred             cccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            000111345788999999998761             379999999999999999999988764

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.5e-25  Score=149.99  Aligned_cols=111  Identities=32%  Similarity=0.505  Sum_probs=103.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||||+|+++...++++|-+|+++||+++..||-++ ..|+..+..++  ++..|+++|||+|+.+.+.         
T Consensus        72 WDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~---------  141 (219)
T KOG0081|consen   72 WDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLEDQRV---------  141 (219)
T ss_pred             eccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhhhhh---------
Confidence            99999999999999999999999999999999999999 99999999776  6777999999999998776         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                       |...++..++.++++ |||++||-++.||++..+.|+..+++..
T Consensus       142 -Vs~~qa~~La~kygl-PYfETSA~tg~Nv~kave~LldlvM~Ri  184 (219)
T KOG0081|consen  142 -VSEDQAAALADKYGL-PYFETSACTGTNVEKAVELLLDLVMKRI  184 (219)
T ss_pred             -hhHHHHHHHHHHhCC-CeeeeccccCcCHHHHHHHHHHHHHHHH
Confidence             588999999999998 9999999999999999999998887643

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.92  E-value=7.1e-25  Score=155.80  Aligned_cols=108  Identities=25%  Similarity=0.464  Sum_probs=96.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||+|+++|..+++.|++++|++|+|||++++.||+.+ ..|+..+.+..+++|+++||||+|+....           +
T Consensus        49 wDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v  116 (200)
T smart00176       49 WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKDRK-----------V  116 (200)
T ss_pred             EECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHH-HHHHHHHHHhCCCCCEEEEEECccccccc-----------C
Confidence            99999999999999999999999999999999999998 89999999887889999999999986422           2


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ..+. ..+++..++ +|+++||++|.||.++|..|++.+.+.
T Consensus       117 ~~~~-~~~~~~~~~-~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176      117 KAKS-ITFHRKKNL-QYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             CHHH-HHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            3333 467788887 999999999999999999999988764

Ran is involved in the active transport of proteins through nuclear pores.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.92  E-value=1.1e-24  Score=154.28  Aligned_cols=115  Identities=39%  Similarity=0.608  Sum_probs=95.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc--------c-
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY--------L-   71 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~--------~-   71 (150)
                      |||||+++  .+++.++++||++|+|||++++.||+.+...|+..+.+..++.|+++||||+|+......        + 
T Consensus        71 wDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~  148 (195)
T cd01873          71 WDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLA  148 (195)
T ss_pred             EeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccc
Confidence            99999987  366789999999999999999999999833699999887778999999999998642110        0 


Q ss_pred             cCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           72 ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                      ........|..+++.++++.+++ +|+++||++|.||+++|+.+++.
T Consensus       149 ~~~~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         149 RPIKNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             cccccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence            00011245789999999999998 99999999999999999999874

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.92  E-value=1.1e-24  Score=151.73  Aligned_cols=119  Identities=47%  Similarity=0.840  Sum_probs=99.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||+|+++|..+++.+++++|++|+|||++++.+|+.+...|+..+....+++|+++||||+|+........  .....+
T Consensus        54 ~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~  133 (175)
T cd01874          54 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQK  133 (175)
T ss_pred             EECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCC
Confidence            999999999999999999999999999999999999983369999987777899999999999865421100  011124


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      .+..+++.++++..+..+++++||++|.|++++|+.+++..
T Consensus       134 ~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         134 PITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             CcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence            57888999999998844899999999999999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.92  E-value=2.2e-24  Score=149.37  Aligned_cols=121  Identities=54%  Similarity=0.910  Sum_probs=102.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccc--cCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL--ADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~   78 (150)
                      |||+|+++|..+++.+++++|++|+|||++++.||+.+...|+..+....+++|+++|+||+|+.......  ..+....
T Consensus        51 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  130 (174)
T smart00174       51 WDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQE  130 (174)
T ss_pred             EECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCC
Confidence            99999999999999999999999999999999999998456999998877899999999999987532110  0111223


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      .+..+++..+++..+..+++++||+++.|++++|+.+++.++.
T Consensus       131 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~~  173 (174)
T smart00174      131 PVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAALN  173 (174)
T ss_pred             CccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence            4678888999999987689999999999999999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.92  E-value=2e-24  Score=150.34  Aligned_cols=118  Identities=54%  Similarity=0.920  Sum_probs=98.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||+|+++|..+++.+++++|++|+|||++++.||+.+...|+..+....++.|+++||||+|+.+......  ......
T Consensus        54 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~  133 (174)
T cd01871          54 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT  133 (174)
T ss_pred             EECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCC
Confidence            999999999999999999999999999999999999984469888887777899999999999864321000  001123


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                      .+..+++..+++.++..+++++||++|.|++++|+.+++.
T Consensus       134 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         134 PITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             CCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence            4788999999999986599999999999999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.92  E-value=1.5e-24  Score=150.63  Aligned_cols=109  Identities=22%  Similarity=0.516  Sum_probs=98.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|..+++.+++++|++|+|||++++.||+.+ ..|...+.+..  +++|+++|+||+|+.+...         
T Consensus        55 ~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~---------  124 (172)
T cd04141          55 LDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEA-SEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ---------  124 (172)
T ss_pred             EeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc---------
Confidence            99999999999999999999999999999999999998 78888777643  5799999999999876433         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                       +..+++..+++.+++ +++++||++|.||+++|+.+++.+..
T Consensus       125 -v~~~~~~~~a~~~~~-~~~e~Sa~~~~~v~~~f~~l~~~~~~  165 (172)
T cd04141         125 -VTTEEGRNLAREFNC-PFFETSAALRHYIDDAFHGLVREIRR  165 (172)
T ss_pred             -cCHHHHHHHHHHhCC-EEEEEecCCCCCHHHHHHHHHHHHHH
Confidence             477888999999997 99999999999999999999998875

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04110 Rab35 Rab35 subfamily

Probab=99.92  E-value=2.8e-24  Score=152.56  Aligned_cols=109  Identities=29%  Similarity=0.507  Sum_probs=99.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|..++..++++++++++|||++++.+|+.+ ..|+..+....++.|+++|+||+|+.....          +
T Consensus        60 ~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl~~~~~----------~  128 (199)
T cd04110          60 WDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPERKV----------V  128 (199)
T ss_pred             EeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccc----------c
Confidence            89999999999999999999999999999999999998 899999988778899999999999876443          3


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      ...++..+++.+++ +++++||++|.||+++|+.+++.++.
T Consensus       129 ~~~~~~~~~~~~~~-~~~e~Sa~~~~gi~~lf~~l~~~~~~  168 (199)
T cd04110         129 ETEDAYKFAGQMGI-SLFETSAKENINVEEMFNCITELVLR  168 (199)
T ss_pred             CHHHHHHHHHHcCC-EEEEEECCCCcCHHHHHHHHHHHHHH
Confidence            66788888888886 89999999999999999999998865

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04109 Rab28 Rab28 subfamily

Probab=99.92  E-value=3e-24  Score=154.12  Aligned_cols=109  Identities=22%  Similarity=0.322  Sum_probs=97.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccccccccCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPG   76 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~D~~~~~~~~~~~~~   76 (150)
                      |||+|++.|..+++.++++||++|+|||++++.+|+++ ..|+..+.+..    .+.|+++|+||+|+.+...       
T Consensus        55 ~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~-------  126 (215)
T cd04109          55 WDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT-------  126 (215)
T ss_pred             EECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhccccCCCceEEEEEECcccccccc-------
Confidence            99999999999999999999999999999999999998 89999988764    2468999999999975433       


Q ss_pred             CCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           77 LVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                         +..++...+++.+++ +++++||++|.|++++|+.+++.+..
T Consensus       127 ---v~~~~~~~~~~~~~~-~~~~iSAktg~gv~~lf~~l~~~l~~  167 (215)
T cd04109         127 ---VKDDKHARFAQANGM-ESCLVSAKTGDRVNLLFQQLAAELLG  167 (215)
T ss_pred             ---cCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence               477888899999997 89999999999999999999998864

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04122 Rab14 Rab14 subfamily

Probab=99.92  E-value=3.7e-24  Score=147.49  Aligned_cols=109  Identities=26%  Similarity=0.576  Sum_probs=98.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..+++.+++++|++|+|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+.....          
T Consensus        56 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~----------  124 (166)
T cd04122          56 WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEAQRD----------  124 (166)
T ss_pred             EECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------
Confidence            99999999999999999999999999999999999998 89998887654 5789999999999976543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +..+++..+++..++ +++++||++|.|++++|..+++.+.+
T Consensus       125 ~~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~e~f~~l~~~~~~  165 (166)
T cd04122         125 VTYEEAKQFADENGL-LFLECSAKTGENVEDAFLETAKKIYQ  165 (166)
T ss_pred             cCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            477888899999887 99999999999999999999988753

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04127 Rab27A Rab27a subfamily

Probab=99.92  E-value=2.7e-24  Score=149.77  Aligned_cols=109  Identities=31%  Similarity=0.544  Sum_probs=98.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..+++.+++++|++++|||++++.||+++ ..|+..+....  ++.|+++|+||+|+.+...         
T Consensus        68 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~---------  137 (180)
T cd04127          68 WDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ---------  137 (180)
T ss_pred             EeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchhcCc---------
Confidence            99999999999999999999999999999999999998 89999887654  5789999999999976543         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                       +..+++..+++.+++ +++++||+++.|++++|+.+++.+++
T Consensus       138 -v~~~~~~~~~~~~~~-~~~e~Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         138 -VSEEQAKALADKYGI-PYFETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             -cCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence             377888999999997 99999999999999999999988764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=6e-25  Score=146.30  Aligned_cols=110  Identities=25%  Similarity=0.499  Sum_probs=102.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||||+|+++.+.||++|-++++|||++++++|+.+ ..|+..++..+ +++-++++|||.|+.+++.          
T Consensus        63 WDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaL-tnWL~DaR~lAs~nIvviL~GnKkDL~~~R~----------  131 (214)
T KOG0086|consen   63 WDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNAL-TNWLTDARTLASPNIVVILCGNKKDLDPERE----------  131 (214)
T ss_pred             eecccHHHHHHHHHHHhccccceEEEEeccchhhHHHH-HHHHHHHHhhCCCcEEEEEeCChhhcChhhh----------
Confidence            99999999999999999999999999999999999998 99999999888 5888999999999987765          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      |+..++..+++...+ -+.++||++|+|+++.|-..++.|+.+
T Consensus       132 VtflEAs~FaqEnel-~flETSa~TGeNVEEaFl~c~~tIl~k  173 (214)
T KOG0086|consen  132 VTFLEASRFAQENEL-MFLETSALTGENVEEAFLKCARTILNK  173 (214)
T ss_pred             hhHHHHHhhhcccce-eeeeecccccccHHHHHHHHHHHHHHH
Confidence            588999999999987 899999999999999999999988753

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.91  E-value=5.5e-24  Score=151.16  Aligned_cols=111  Identities=23%  Similarity=0.414  Sum_probs=98.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccccccccCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHP   75 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~D~~~~~~~~~~~~   75 (150)
                      |||||+++|..+++.++++|+++|+|||++++.+|+.+ ..|+..+....     .++|+++|+||+|+.....      
T Consensus        55 ~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~------  127 (201)
T cd04107          55 WDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA------  127 (201)
T ss_pred             EECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc------
Confidence            99999999999999999999999999999999999998 89988876432     4789999999999975333      


Q ss_pred             CCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           76 GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                          +..+++..+++.++..+++++||++|.|++++|+.+++.+...
T Consensus       128 ----~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~  170 (201)
T cd04107         128 ----KDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILAN  170 (201)
T ss_pred             ----cCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence                4778899999999855999999999999999999999988754

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.91  E-value=9.7e-24  Score=145.76  Aligned_cols=109  Identities=28%  Similarity=0.505  Sum_probs=95.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||+|+++|..+++.+++++|++|+|||++++.+++.+ ..|+..+.+..+++|+++|+||+|+....            
T Consensus        54 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piiiv~nK~Dl~~~~------------  120 (166)
T cd00877          54 WDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCGNIPIVLCGNKVDIKDRK------------  120 (166)
T ss_pred             EECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhccccc------------
Confidence            99999999999999999999999999999999999998 89999999887789999999999987332            


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      .......+++..++ +++++||++|.|++++|+.|++.+.+.+
T Consensus       121 ~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~~f~~l~~~~~~~~  162 (166)
T cd00877         121 VKAKQITFHRKKNL-QYYEISAKSNYNFEKPFLWLARKLLGNP  162 (166)
T ss_pred             CCHHHHHHHHHcCC-EEEEEeCCCCCChHHHHHHHHHHHHhcc
Confidence            22334566666665 8999999999999999999999998644

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.91  E-value=8.1e-24  Score=152.36  Aligned_cols=108  Identities=25%  Similarity=0.441  Sum_probs=96.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||+|+++|..++..|++++|++|+|||++++.+|+.+ ..|+..+.+..+++|+++||||+|+....           +
T Consensus        67 ~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v  134 (219)
T PLN03071         67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------V  134 (219)
T ss_pred             EECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhhhhcc-----------C
Confidence            99999999999999999999999999999999999998 89999999877889999999999986432           2


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ..+++ .+++..++ +|+++||++|.||.++|..|++.+.+.
T Consensus       135 ~~~~~-~~~~~~~~-~~~e~SAk~~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        135 KAKQV-TFHRKKNL-QYYEISAKSNYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             CHHHH-HHHHhcCC-EEEEcCCCCCCCHHHHHHHHHHHHHcC
Confidence            34444 67777787 899999999999999999999998754

>cd04112 Rab26 Rab26 subfamily

Probab=99.91  E-value=1.4e-23  Score=148.00  Aligned_cols=110  Identities=30%  Similarity=0.596  Sum_probs=98.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++++ ..|+..+.+..+ +.|+++|+||+|+.....          
T Consensus        55 ~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------  123 (191)
T cd04112          55 WDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNI-RAWLTEIKEYAQEDVVIMLLGNKADMSGERV----------  123 (191)
T ss_pred             EeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccchhccc----------
Confidence            99999999999999999999999999999999999998 889999988764 799999999999875433          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      +...+...+++.++. +++++||++|.|++++|..+++.+.+.
T Consensus       124 ~~~~~~~~l~~~~~~-~~~e~Sa~~~~~v~~l~~~l~~~~~~~  165 (191)
T cd04112         124 VKREDGERLAKEYGV-PFMETSAKTGLNVELAFTAVAKELKHR  165 (191)
T ss_pred             cCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            366788888888887 999999999999999999999988765

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04136 Rap_like Rap-like subfamily

Probab=99.90  E-value=1.8e-23  Score=143.03  Aligned_cols=107  Identities=29%  Similarity=0.574  Sum_probs=94.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..+++.+++++|++++|||++++.+++.+ ..|...+.+..  ++.|+++|+||+|+.....         
T Consensus        54 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------  123 (163)
T cd04136          54 LDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDL-QDLREQILRVKDTENVPMVLVGNKCDLEDERV---------  123 (163)
T ss_pred             EECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce---------
Confidence            99999999999999999999999999999999999998 88988887653  4799999999999875433         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                       +..++...+++.++. +++++||+++.|+.++|+.+++.+
T Consensus       124 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         124 -VSREEGQALARQWGC-PFYETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             -ecHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHhc
Confidence             366677788888885 999999999999999999998765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04128 Spg1 Spg1p

Probab=99.90  E-value=2.2e-23  Score=146.12  Aligned_cols=116  Identities=25%  Similarity=0.433  Sum_probs=96.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..+++.++++||++++|||++++.+|+++ ..|+..+.+..+ ..| ++||||+|+......     ....
T Consensus        54 wDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i-~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~-----~~~~  126 (182)
T cd04128          54 WDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSI-KEWYRQARGFNKTAIP-ILVGTKYDLFADLPP-----EEQE  126 (182)
T ss_pred             EeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCE-EEEEEchhccccccc-----hhhh
Confidence            99999999999999999999999999999999999998 899999987654 455 789999998642110     0011


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  124 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  124 (150)
                      ...+++..+++.+++ +++++||++|.|++++|+.+++.+.+-+.
T Consensus       127 ~~~~~~~~~a~~~~~-~~~e~SAk~g~~v~~lf~~l~~~l~~~~~  170 (182)
T cd04128         127 EITKQARKYAKAMKA-PLIFCSTSHSINVQKIFKIVLAKAFDLPL  170 (182)
T ss_pred             hhHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHhcCC
Confidence            234677888999996 99999999999999999999998876443

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04125 RabA_like RabA-like subfamily

Probab=99.90  E-value=2e-23  Score=146.70  Aligned_cols=110  Identities=31%  Similarity=0.521  Sum_probs=98.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..+++.+++++|++|+|||++++.+|+.+ ..|+..+.... .+.|+++|+||+|+.+...          
T Consensus        54 ~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~----------  122 (188)
T cd04125          54 WDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENL-KFWINEINRYARENVIKVIVANKSDLVNNKV----------  122 (188)
T ss_pred             EECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCCccccc----------
Confidence            99999999999999999999999999999999999998 88999998765 4689999999999876543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      +.......+++..++ +++++||+++.|++++|..+++.+...
T Consensus       123 v~~~~~~~~~~~~~~-~~~evSa~~~~~i~~~f~~l~~~~~~~  164 (188)
T cd04125         123 VDSNIAKSFCDSLNI-PFFETSAKQSINVEEAFILLVKLIIKR  164 (188)
T ss_pred             CCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            366777888888887 999999999999999999999988653

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04175 Rap1 Rap1 subgroup

Probab=99.90  E-value=2.6e-23  Score=142.80  Aligned_cols=107  Identities=26%  Similarity=0.570  Sum_probs=95.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..+++.+++++|++++|||++++.+|+.+ ..|...+....  ++.|+++|+||+|+.....         
T Consensus        54 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------  123 (164)
T cd04175          54 LDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV---------  123 (164)
T ss_pred             EECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcchhccE---------
Confidence            99999999999999999999999999999999999998 78888887543  5799999999999976543         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                       +...++..+++.+++ +++++||+++.|+.++|..+++.+
T Consensus       124 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~l~~~l  162 (164)
T cd04175         124 -VGKEQGQNLARQWGC-AFLETSAKAKINVNEIFYDLVRQI  162 (164)
T ss_pred             -EcHHHHHHHHHHhCC-EEEEeeCCCCCCHHHHHHHHHHHh
Confidence             366677788888887 999999999999999999998765

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04117 Rab15 Rab15 subfamily

Probab=99.90  E-value=2.8e-23  Score=142.72  Aligned_cols=106  Identities=31%  Similarity=0.610  Sum_probs=96.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..+++.+++++|++++|||++++.||+.+ ..|++.+....+ +.|+++|+||.|+.....          
T Consensus        54 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------  122 (161)
T cd04117          54 WDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----------  122 (161)
T ss_pred             EeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------
Confidence            99999999999999999999999999999999999998 899998887664 699999999999876543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                      +..+++..+++.+++ +++++||++|.|++++|..|++.
T Consensus       123 v~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         123 VGDEQGNKLAKEYGM-DFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             CCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHhh
Confidence            477889999999987 99999999999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04124 RabL2 RabL2 subfamily

Probab=99.90  E-value=4.8e-23  Score=141.46  Aligned_cols=107  Identities=26%  Similarity=0.496  Sum_probs=94.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||+|+++|..+++.+++++|++|+|||++++.+++++ ..|+..+.+..++.|+++|+||+|+...             
T Consensus        54 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-------------  119 (161)
T cd04124          54 WDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLDPS-------------  119 (161)
T ss_pred             EeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCchh-------------
Confidence            99999999999999999999999999999999999998 8999999877778999999999998432             


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ...+...++...++ +++++||+++.|++++|+.+++.+..+
T Consensus       120 ~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~~~  160 (161)
T cd04124         120 VTQKKFNFAEKHNL-PLYYVSAADGTNVVKLFQDAIKLAVSY  160 (161)
T ss_pred             HHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            23445566777776 899999999999999999999988754

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01865 Rab3 Rab3 subfamily

Probab=99.90  E-value=5e-23  Score=141.78  Aligned_cols=109  Identities=31%  Similarity=0.643  Sum_probs=97.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..++..+++++|++++|||++++.+++.+ ..|++.+.+.. ++.|+++|+||+|+.+...          
T Consensus        55 ~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~----------  123 (165)
T cd01865          55 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDERV----------  123 (165)
T ss_pred             EECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCcccc----------
Confidence            99999999999999999999999999999999999998 89999998766 4799999999999976543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +..+...++++.+++ +++++||+++.|++++|+.+++.+..
T Consensus       124 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~~  164 (165)
T cd01865         124 VSSERGRQLADQLGF-EFFEASAKENINVKQVFERLVDIICD  164 (165)
T ss_pred             cCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            366778888888887 89999999999999999999987653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04176 Rap2 Rap2 subgroup

Probab=99.90  E-value=4.6e-23  Score=141.35  Aligned_cols=107  Identities=25%  Similarity=0.577  Sum_probs=94.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|..+++.|++++|++++|||++++.+|+++ ..|...+.+..  .++|+++|+||+|+.....         
T Consensus        54 ~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~---------  123 (163)
T cd04176          54 LDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLESERE---------  123 (163)
T ss_pred             EECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcCc---------
Confidence            99999999999999999999999999999999999998 88988887654  5799999999999865432         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                       +...+...++..++. +++++||+++.|+.++|..+++.+
T Consensus       124 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         124 -VSSAEGRALAEEWGC-PFMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             -cCHHHHHHHHHHhCC-EEEEecCCCCCCHHHHHHHHHHhc
Confidence             355677888888886 999999999999999999998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.90  E-value=5.9e-23  Score=141.65  Aligned_cols=109  Identities=29%  Similarity=0.549  Sum_probs=98.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..++..++++||++|+|||++++.+|+.+ ..|+..+.+.. .+.|+++|+||+|+.+...          
T Consensus        57 ~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~----------  125 (167)
T cd01867          57 WDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENI-RNWMRNIEEHASEDVERMLVGNKCDMEEKRV----------  125 (167)
T ss_pred             EeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------
Confidence            89999999999999999999999999999999999998 88999998765 4799999999999976433          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +..+++..+++.+++ +++++||+++.|++++|+.+++.+..
T Consensus       126 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         126 VSKEEGEALADEYGI-KFLETSAKANINVEEAFFTLAKDIKK  166 (167)
T ss_pred             CCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            366788888998887 99999999999999999999998764

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.90  E-value=3.8e-23  Score=141.53  Aligned_cols=108  Identities=35%  Similarity=0.776  Sum_probs=100.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      ||++|+++|..++..+++++|++|+|||++++.||+.+ ..|++.+....+ +.|+++||||.|+.....          
T Consensus        53 ~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~-~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~----------  121 (162)
T PF00071_consen   53 WDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENL-KKWLEEIQKYKPEDIPIIVVGNKSDLSDERE----------  121 (162)
T ss_dssp             EEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTH-HHHHHHHHHHSTTTSEEEEEEETTTGGGGSS----------
T ss_pred             cccccccccccccccccccccccccccccccccccccc-ccccccccccccccccceeeecccccccccc----------
Confidence            99999999999999999999999999999999999998 899999999887 799999999999887443          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      +..+++..+++.++. +|+++||+++.||.++|..+++.+.
T Consensus       122 v~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  122 VSVEEAQEFAKELGV-PYFEVSAKNGENVKEIFQELIRKIL  161 (162)
T ss_dssp             SCHHHHHHHHHHTTS-EEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHhCC-EEEEEECCCCCCHHHHHHHHHHHHh
Confidence            588999999999995 9999999999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.90  E-value=5.8e-23  Score=141.34  Aligned_cols=108  Identities=28%  Similarity=0.578  Sum_probs=97.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++++|++|+|||++++.+|+.+ ..|+..+.+.. ++.|+++|+||+|+.....          
T Consensus        56 ~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----------  124 (166)
T cd01869          56 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDKRV----------  124 (166)
T ss_pred             EECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEEChhcccccC----------
Confidence            89999999999999999999999999999999999998 88999988766 5799999999999876443          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      +..+++..+++.+++ +++++||++|.|++++|..+++.+.
T Consensus       125 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~~i~~~~~  164 (166)
T cd01869         125 VDYSEAQEFADELGI-PFLETSAKNATNVEQAFMTMAREIK  164 (166)
T ss_pred             CCHHHHHHHHHHcCC-eEEEEECCCCcCHHHHHHHHHHHHH
Confidence            367888899999987 9999999999999999999998875

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.90  E-value=5.4e-23  Score=140.70  Aligned_cols=106  Identities=29%  Similarity=0.515  Sum_probs=96.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|..+++.+++++|++++|||++++.+++.+ ..|+..+....+++|+++|+||+|+.....          +
T Consensus        56 ~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------v  124 (162)
T cd04106          56 WDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLDQAV----------I  124 (162)
T ss_pred             eeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhcccccC----------C
Confidence            99999999999999999999999999999999999998 899999887778899999999999876443          3


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                      ..+++..+++.+++ +++++||+++.|++++|+.+...
T Consensus       125 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~  161 (162)
T cd04106         125 TNEEAEALAKRLQL-PLFRTSVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             CHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHh
Confidence            66788889999998 99999999999999999998754

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04129 Rho2 Rho2 subfamily

Probab=99.90  E-value=1.6e-22  Score=142.09  Aligned_cols=122  Identities=43%  Similarity=0.690  Sum_probs=101.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||+|+++|..+.+.+++.+|++++|||++++++|+.+...|+..+.+..+++|+++|+||+|+...............+
T Consensus        54 ~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~  133 (187)
T cd04129          54 WDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFV  133 (187)
T ss_pred             EECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcC
Confidence            89999999998888899999999999999999999998447999998877889999999999985432110011122345


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ...+...+++.++..+++++||++|.|++++|+.+++.++..
T Consensus       134 ~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~  175 (187)
T cd04129         134 PIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALLV  175 (187)
T ss_pred             CHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhcc
Confidence            677888999999866899999999999999999999888754

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04118 Rab24 Rab24 subfamily

Probab=99.89  E-value=1.8e-22  Score=142.24  Aligned_cols=114  Identities=31%  Similarity=0.484  Sum_probs=98.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||+|+++|..++..+++++|++++|||++++.+++.+ ..|+..+....++.|+++|+||+|+.....      ....+
T Consensus        55 ~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~------~~~~v  127 (193)
T cd04118          55 WDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIEQDR------SLRQV  127 (193)
T ss_pred             EECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEccccccccc------ccCcc
Confidence            99999999999999999999999999999999999998 889999988767899999999999864321      11234


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ...++..++..++. +++++||+++.|++++|+.+++.+...
T Consensus       128 ~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~i~~~~~~~  168 (193)
T cd04118         128 DFHDVQDFADEIKA-QHFETSSKTGQNVDELFQKVAEDFVSR  168 (193)
T ss_pred             CHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            56677888888886 899999999999999999999988653

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.89  E-value=1.7e-22  Score=140.19  Aligned_cols=117  Identities=45%  Similarity=0.837  Sum_probs=97.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccc--cCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL--ADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~   78 (150)
                      |||||+++|..+++.+++++|++|+|||++++.+|+.+...|+..+....++.|+++|+||.|+.......  ......+
T Consensus        53 ~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  132 (173)
T cd04130          53 CDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEK  132 (173)
T ss_pred             EECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCC
Confidence            99999999999999999999999999999999999987457998888766789999999999986532100  0001223


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                      .+..+++..+++..+..+++++||+++.|++++|+.++-
T Consensus       133 ~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~  171 (173)
T cd04130         133 PVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL  171 (173)
T ss_pred             CcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence            467788999999998768999999999999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.89  E-value=1.5e-22  Score=138.81  Aligned_cols=108  Identities=22%  Similarity=0.486  Sum_probs=96.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC------CCCCEEEEeeCCCcccccccccCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS------PGVPVVLVGTKLDLREDKHYLADH   74 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~------~~~piilv~nK~D~~~~~~~~~~~   74 (150)
                      |||+|+++|..+++.+++++|++|+|||++++.+++.+ ..|+..+.+..      .+.|+++|+||+|+.+...     
T Consensus        54 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----  127 (168)
T cd04119          54 FDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA-----  127 (168)
T ss_pred             EECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhH-HHHHHHHHHhccccccCCCceEEEEEEchhcccccc-----
Confidence            99999999999999999999999999999999999998 89999888764      3589999999999874332     


Q ss_pred             CCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           75 PGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                           +..++...+++..++ +++++||+++.|++++|+.+++.++
T Consensus       128 -----~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         128 -----VSEDEGRLWAESKGF-KYFETSACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             -----cCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHh
Confidence                 367788888888886 8999999999999999999998876

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04135 Tc10 TC10 subfamily

Probab=99.89  E-value=3.6e-22  Score=138.29  Aligned_cols=119  Identities=51%  Similarity=0.903  Sum_probs=99.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccc--cCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL--ADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~   78 (150)
                      |||||+++|..+++.+++++|++++|||++++.+|+.+...|...+....++.|+++|+||+|+.+.....  ..+....
T Consensus        53 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~  132 (174)
T cd04135          53 YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEK  132 (174)
T ss_pred             EeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCC
Confidence            89999999999999999999999999999999999998557888887766789999999999986543110  0111123


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      .+..+++..+++..+..+++++||+++.|++++|+.++..+
T Consensus       133 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         133 PVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence            46778899999999977899999999999999999999875

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04140 ARHI_like ARHI subfamily

Probab=99.89  E-value=1.5e-22  Score=139.37  Aligned_cols=106  Identities=24%  Similarity=0.459  Sum_probs=92.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccccccccCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPG   76 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~D~~~~~~~~~~~~~   76 (150)
                      |||+|+++|..++..+++.++++|+|||++++.+++.+ ..|+..+.+..    ++.|+++|+||+|+.....       
T Consensus        54 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~-------  125 (165)
T cd04140          54 TDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEEL-KPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE-------  125 (165)
T ss_pred             EECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHHhcCCCCCCCEEEEEECccccccCe-------
Confidence            89999999999999999999999999999999999998 88887776543    4799999999999865332       


Q ss_pred             CCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           77 LVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                         +...++..++..+++ +++++||++|.|++++|+.|+++
T Consensus       126 ---v~~~~~~~~~~~~~~-~~~e~SA~~g~~v~~~f~~l~~~  163 (165)
T cd04140         126 ---VSSNEGAACATEWNC-AFMETSAKTNHNVQELFQELLNL  163 (165)
T ss_pred             ---ecHHHHHHHHHHhCC-cEEEeecCCCCCHHHHHHHHHhc
Confidence               466777888888887 89999999999999999998753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01864 Rab19 Rab19 subfamily

Probab=99.89  E-value=1.8e-22  Score=138.87  Aligned_cols=107  Identities=30%  Similarity=0.509  Sum_probs=96.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..+++.+++++|++++|||++++.+++.+ ..|+..+.... .++|+++|+||+|+.....          
T Consensus        57 ~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----------  125 (165)
T cd01864          57 WDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQRE----------  125 (165)
T ss_pred             EECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------
Confidence            89999999999999999999999999999999999998 89999998754 5799999999999876543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                      +...++..+++.++...++++||++|.|++++|+.+++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         126 VLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             cCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence            367788889998887689999999999999999999875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.89  E-value=2.3e-22  Score=139.43  Aligned_cols=112  Identities=26%  Similarity=0.447  Sum_probs=95.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-C-CCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-P-GVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~-~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|..+++.+++++|++++|||++++.+++.+ ..|+..+.+.. + +.|+++|+||.|+.....        .
T Consensus        54 ~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~--------~  124 (170)
T cd04108          54 WDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ--------Y  124 (170)
T ss_pred             EeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcCcccc--------c
Confidence            99999999999999999999999999999999999998 89998876543 3 478999999999865322        1


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      .+...++..+++.++. +++++||+++.|++++|+.+++.+.+.
T Consensus       125 ~~~~~~~~~~~~~~~~-~~~e~Sa~~g~~v~~lf~~l~~~~~~~  167 (170)
T cd04108         125 ALMEQDAIKLAAEMQA-EYWSVSALSGENVREFFFRVAALTFEL  167 (170)
T ss_pred             cccHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            1245677788888887 899999999999999999999988653

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.89  E-value=2.6e-22  Score=137.64  Aligned_cols=108  Identities=32%  Similarity=0.600  Sum_probs=95.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..+++.+++++|++++|||++++.+++.+ ..|...+.+..  .+.|+++|+||+|+.....         
T Consensus        53 ~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~---------  122 (164)
T smart00173       53 LDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESERV---------  122 (164)
T ss_pred             EECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce---------
Confidence            89999999999999999999999999999999999998 78877776543  3689999999999876443         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                       +....+..+++.++. +++++||+++.|++++|+.+++.+.
T Consensus       123 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      123 -VSTEEGKELARQWGC-PFLETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             -EcHHHHHHHHHHcCC-EEEEeecCCCCCHHHHHHHHHHHHh
Confidence             366777888888886 9999999999999999999998765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.88  E-value=2.5e-22  Score=137.78  Aligned_cols=107  Identities=25%  Similarity=0.478  Sum_probs=94.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|..+++.+++++|++++|||++++.+++.+ ..|+..+.+..++.|+++|+||+|+.+...          +
T Consensus        57 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~  125 (164)
T cd04101          57 FDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADKAE----------V  125 (164)
T ss_pred             EECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccC----------C
Confidence            99999999999999999999999999999999999988 899999887766799999999999865433          3


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      .......+...+++ +++++||+++.|++++|+.+++.+
T Consensus       126 ~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         126 TDAQAQAFAQANQL-KFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             CHHHHHHHHHHcCC-eEEEEeCCCCCChHHHHHHHHHHh
Confidence            55666677777786 899999999999999999999875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01866 Rab2 Rab2 subfamily

Probab=99.88  E-value=3.3e-22  Score=138.15  Aligned_cols=109  Identities=27%  Similarity=0.543  Sum_probs=97.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..++..+++++|++++|||++++.+++.+ ..|+..+.+.. ++.|+++|+||.|+.+...          
T Consensus        58 ~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----------  126 (168)
T cd01866          58 WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLESRRE----------  126 (168)
T ss_pred             EECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------
Confidence            99999999999999999999999999999999999998 89999887754 6899999999999875433          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +..+++..++...++ +++++||+++.|++++|..+++.+.+
T Consensus       127 ~~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         127 VSYEEGEAFAKEHGL-IFMETSAKTASNVEEAFINTAKEIYE  167 (168)
T ss_pred             CCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            477788888888887 99999999999999999999988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04111 Rab39 Rab39 subfamily

Probab=99.88  E-value=2e-22  Score=144.30  Aligned_cols=110  Identities=30%  Similarity=0.525  Sum_probs=98.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|..++..+++++|++|+|||++++.||+++ ..|+..+.+..  ...|+++|+||+|+.....         
T Consensus        57 ~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l-~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~---------  126 (211)
T cd04111          57 WDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQRQ---------  126 (211)
T ss_pred             EeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEccccccccc---------
Confidence            99999999999999999999999999999999999998 89999887654  2578899999999876443         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                       +..++...+++.+++ +++++||+++.|++++|+.|++.+.+.
T Consensus       127 -v~~~~~~~~~~~~~~-~~~e~Sak~g~~v~e~f~~l~~~~~~~  168 (211)
T cd04111         127 -VTREEAEKLAKDLGM-KYIETSARTGDNVEEAFELLTQEIYER  168 (211)
T ss_pred             -cCHHHHHHHHHHhCC-EEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence             477888899999996 999999999999999999999988654

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04116 Rab9 Rab9 subfamily

Probab=99.88  E-value=2.9e-22  Score=138.36  Aligned_cols=106  Identities=32%  Similarity=0.582  Sum_probs=93.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccccccccCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHP   75 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~D~~~~~~~~~~~~   75 (150)
                      |||+|+++|..++..+++++|++++|||++++.+++.+ ..|...+....     .++|+++|+||.|+....       
T Consensus        59 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------  130 (170)
T cd04116          59 WDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ-------  130 (170)
T ss_pred             EeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhH-HHHHHHHHHhcccccCCCCcEEEEEECccccccc-------
Confidence            99999999999999999999999999999999999998 88988776543     368999999999986322       


Q ss_pred             CCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           76 GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                          +..+++.++++.++..+++++||+++.|+.++|..+++.
T Consensus       131 ----~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         131 ----VSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             ----cCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence                367888899999886689999999999999999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.88  E-value=2.8e-22  Score=137.26  Aligned_cols=107  Identities=32%  Similarity=0.612  Sum_probs=94.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..+++.+++++|++++|||++++.+++.+ ..|...+.+..  .+.|+++|+||+|+.....         
T Consensus        55 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~---------  124 (164)
T cd04145          55 LDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEHQRK---------  124 (164)
T ss_pred             EECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCCEEEEeeCccccccce---------
Confidence            89999999999999999999999999999999999998 88888887653  4789999999999876443         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                       +..++...+++..+. +++++||++|.|+.++|+.+++.+
T Consensus       125 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         125 -VSREEGQELARKLKI-PYIETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             -ecHHHHHHHHHHcCC-cEEEeeCCCCCCHHHHHHHHHHhh
Confidence             366678888888887 999999999999999999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=3.3e-23  Score=137.58  Aligned_cols=109  Identities=28%  Similarity=0.561  Sum_probs=97.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||||+|+++.++||+.|+++|+|||++=.+||+-+ ++|+.+|.+++. .+-.|+||||.|+.+.+.          
T Consensus        61 wdtagqerfrsitqsyyrsahalilvydiscqpsfdcl-pewlreie~yan~kvlkilvgnk~d~~drre----------  129 (213)
T KOG0095|consen   61 WDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCL-PEWLREIEQYANNKVLKILVGNKIDLADRRE----------  129 (213)
T ss_pred             eeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhh-HHHHHHHHHHhhcceEEEeeccccchhhhhh----------
Confidence            99999999999999999999999999999999999987 999999999985 466799999999887644          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      |+...+..+...... .|+++||+...|++.+|..++-.+..
T Consensus       130 vp~qigeefs~~qdm-yfletsakea~nve~lf~~~a~rli~  170 (213)
T KOG0095|consen  130 VPQQIGEEFSEAQDM-YFLETSAKEADNVEKLFLDLACRLIS  170 (213)
T ss_pred             hhHHHHHHHHHhhhh-hhhhhcccchhhHHHHHHHHHHHHHH
Confidence            577788888888765 88999999999999999999877654

>cd01868 Rab11_like Rab11-like

Probab=99.88  E-value=4.6e-22  Score=136.63  Aligned_cols=107  Identities=29%  Similarity=0.545  Sum_probs=96.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..+++.++++++++|+|||++++.+++++ ..|+..+.+..+ +.|+++|+||+|+.....          
T Consensus        57 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~----------  125 (165)
T cd01868          57 WDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------  125 (165)
T ss_pred             EeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------
Confidence            89999999999999999999999999999999999998 899999887765 599999999999876443          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      +..++...+++..++ +++++||+++.|++++|+.++..+
T Consensus       126 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         126 VPTEEAKAFAEKNGL-SFIETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHh
Confidence            367788888888886 999999999999999999998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.88  E-value=5.1e-22  Score=135.40  Aligned_cols=106  Identities=34%  Similarity=0.605  Sum_probs=93.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|..++..|++++|++++|||++++.+++++ ..|...+.+..  .+.|+++|+||+|+....          
T Consensus        54 ~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~----------  122 (162)
T cd04138          54 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAART----------  122 (162)
T ss_pred             EECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccce----------
Confidence            99999999999999999999999999999999999998 78888887654  479999999999987532          


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                       +...++..+++.+++ +++++||+++.|++++|+.+++.+
T Consensus       123 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         123 -VSSRQGQDLAKSYGI-PYIETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             -ecHHHHHHHHHHhCC-eEEEecCCCCCCHHHHHHHHHHHh
Confidence             266778888888887 999999999999999999998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.88  E-value=4.7e-22  Score=136.48  Aligned_cols=104  Identities=25%  Similarity=0.355  Sum_probs=87.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|++.     ..+++++|++++|||++++.||+.+ ..|++.+....  +++|+++||||.|+....        ..
T Consensus        52 ~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~--------~~  117 (158)
T cd04103          52 RDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTV-YNLYHQLSSYRNISEIPLILVGTQDAISESN--------PR  117 (158)
T ss_pred             EECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC--------Cc
Confidence            99999986     3567899999999999999999998 88999998765  579999999999985321        12


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                      .+..+++.++++..+..+|++|||++|.||+++|..+++.
T Consensus       118 ~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103         118 VIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             ccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence            3577788888887642399999999999999999999865

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PLN03110 Rab GTPase; Provisional

Probab=99.88  E-value=4.8e-22  Score=142.85  Aligned_cols=109  Identities=26%  Similarity=0.529  Sum_probs=97.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..+++.++++++++|+|||++++.+|+.+ ..|+..+.... .+.|+++|+||+|+.....          
T Consensus        66 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------  134 (216)
T PLN03110         66 WDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHLRS----------  134 (216)
T ss_pred             EECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEEChhcccccC----------
Confidence            99999999999999999999999999999999999998 89999888765 4799999999999865443          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +..+++..++..+++ +++++||+++.|++++|+.+++.+.+
T Consensus       135 ~~~~~~~~l~~~~~~-~~~e~SA~~g~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        135 VAEEDGQALAEKEGL-SFLETSALEATNVEKAFQTILLEIYH  175 (216)
T ss_pred             CCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            367788888888887 99999999999999999999988753

>cd04113 Rab4 Rab4 subfamily

Probab=99.88  E-value=6.3e-22  Score=135.44  Aligned_cols=107  Identities=27%  Similarity=0.541  Sum_probs=96.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..+++.+++++|++++|||++++.+++.+ ..|+..+.... +++|+++|+||+|+.....          
T Consensus        54 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------  122 (161)
T cd04113          54 WDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEAL-PTWLSDARALASPNIVVILVGNKSDLADQRE----------  122 (161)
T ss_pred             EECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcchhcc----------
Confidence            99999999999999999999999999999999999998 89988887654 6899999999999876433          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      +..+++..+++..++ +++++||+++.|++++|+.+++.+
T Consensus       123 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~~~~~~  161 (161)
T cd04113         123 VTFLEASRFAQENGL-LFLETSALTGENVEEAFLKCARSI  161 (161)
T ss_pred             CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHhC
Confidence            477888899999996 999999999999999999998753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.87  E-value=1.4e-21  Score=138.37  Aligned_cols=110  Identities=32%  Similarity=0.602  Sum_probs=99.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      +||+|+++|..+...|++.+|+|++||+++++.||+.+ ..+...|.+..  ..+|+++||||+|+.....         
T Consensus        56 lDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~-~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~---------  125 (196)
T KOG0395|consen   56 LDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEA-KQLREQILRVKGRDDVPIILVGNKCDLERERQ---------  125 (196)
T ss_pred             EcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHH-HHHHHHHHHhhCcCCCCEEEEEEcccchhccc---------
Confidence            69999999999999999999999999999999999998 88888884432  3689999999999987654         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                       |..+++..++..+++ +|+|+||+.+.+++++|..|++.+..+
T Consensus       126 -V~~eeg~~la~~~~~-~f~E~Sak~~~~v~~~F~~L~r~~~~~  167 (196)
T KOG0395|consen  126 -VSEEEGKALARSWGC-AFIETSAKLNYNVDEVFYELVREIRLP  167 (196)
T ss_pred             -cCHHHHHHHHHhcCC-cEEEeeccCCcCHHHHHHHHHHHHHhh
Confidence             599999999999999 799999999999999999999988763

>cd04142 RRP22 RRP22 subfamily

Probab=99.87  E-value=2.3e-21  Score=137.58  Aligned_cols=113  Identities=20%  Similarity=0.316  Sum_probs=90.8

Q ss_pred             CCCCCccccccc--------ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCccccc
Q 031970            1 MNVIGQEDYNRL--------RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDK   68 (150)
Q Consensus         1 wDt~G~e~~~~l--------~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~D~~~~~   68 (150)
                      |||||+++|...        ...+++++|++|+|||++++.||+.+ ..|...+....    +++|+++|+||+|+....
T Consensus        54 ~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~  132 (198)
T cd04142          54 LDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQRHR  132 (198)
T ss_pred             EeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcccCCCCCCEEEEEECccccccc
Confidence            899998765422        23457899999999999999999998 88888877653    579999999999997643


Q ss_pred             ccccCCCCCCccCHHHHHHHHH-HcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcc
Q 031970           69 HYLADHPGLVPVTTAQGEELRK-QIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQK  125 (150)
Q Consensus        69 ~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  125 (150)
                      .          +..+++..++. .+++ +++++||++|.||+++|+.+++.+....+.
T Consensus       133 ~----------~~~~~~~~~~~~~~~~-~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~  179 (198)
T cd04142         133 F----------APRHVLSVLVRKSWKC-GYLECSAKYNWHILLLFKELLISATTRGRS  179 (198)
T ss_pred             c----------ccHHHHHHHHHHhcCC-cEEEecCCCCCCHHHHHHHHHHHhhccCCC
Confidence            3          25566666654 4576 999999999999999999999999865443

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=3.4e-22  Score=131.82  Aligned_cols=109  Identities=27%  Similarity=0.553  Sum_probs=100.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|||+|+.+.++||++|-+.++|||++...+++++ ..|+...+... ++..++++|||.|+...+.          
T Consensus        65 wdtagqerfravtrsyyrgaagalmvyditrrstynhl-sswl~dar~ltnpnt~i~lignkadle~qrd----------  133 (215)
T KOG0097|consen   65 WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLESQRD----------  133 (215)
T ss_pred             eecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhH-HHHHhhhhccCCCceEEEEecchhhhhhccc----------
Confidence            99999999999999999999999999999999999998 89998887765 6788999999999987665          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      |+.+++.+++...|+ -|+++||++|.++++.|-+.++.+.+
T Consensus       134 v~yeeak~faeengl-~fle~saktg~nvedafle~akkiyq  174 (215)
T KOG0097|consen  134 VTYEEAKEFAEENGL-MFLEASAKTGQNVEDAFLETAKKIYQ  174 (215)
T ss_pred             CcHHHHHHHHhhcCe-EEEEecccccCcHHHHHHHHHHHHHH
Confidence            588999999999997 99999999999999999999888754

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.87  E-value=1.3e-21  Score=135.34  Aligned_cols=107  Identities=28%  Similarity=0.465  Sum_probs=95.1

Q ss_pred             CCCCCccccc-ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCC
Q 031970            1 MNVIGQEDYN-RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         1 wDt~G~e~~~-~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      |||+|+++|. .+++.+++++|++++|||++++.+++.+ ..|+..+....  .++|+++|+||+|+.....        
T Consensus        56 ~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--------  126 (170)
T cd04115          56 WDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKCDLREQIQ--------  126 (170)
T ss_pred             EeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhH-HHHHHHHHHhcCCCCCCEEEEEECccchhhcC--------
Confidence            8999999997 5888999999999999999999999998 89998888764  4799999999999876543        


Q ss_pred             CccCHHHHHHHHHHcCCcEEEEeccCC---CCCHHHHHHHHHHHH
Q 031970           78 VPVTTAQGEELRKQIGASYYIECSSKT---QQNVKAVFDAAIKVV  119 (150)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~~~l~~~~  119 (150)
                        +...+...+++.+++ +++++||++   +.+++++|..+++.+
T Consensus       127 --~~~~~~~~~~~~~~~-~~~e~Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         127 --VPTDLAQRFADAHSM-PLFETSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             --CCHHHHHHHHHHcCC-cEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence              467788889998886 999999999   999999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04177 RSR1 RSR1 subgroup

Probab=99.87  E-value=2.4e-21  Score=133.73  Aligned_cols=109  Identities=29%  Similarity=0.526  Sum_probs=95.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|..+++.++++++++++|||++++.+++.+ ..|...+.+..  .+.|+++++||.|+.....         
T Consensus        54 ~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~---------  123 (168)
T cd04177          54 LDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLEDDRQ---------  123 (168)
T ss_pred             EeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhccccCc---------
Confidence            89999999999999999999999999999999999998 88888887543  4799999999999865433         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                       +..++...+++.++..+++++||+++.|++++|+++++.++
T Consensus       124 -~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~  164 (168)
T cd04177         124 -VSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII  164 (168)
T ss_pred             -cCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence             36677778888888448999999999999999999998764

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.87  E-value=4.2e-21  Score=133.02  Aligned_cols=119  Identities=45%  Similarity=0.816  Sum_probs=97.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||+|+++|..++..+++++|++++|||++++.+|+.+...|...+.+..++.|+++|+||+|+........  ......
T Consensus        54 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~  133 (175)
T cd01870          54 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE  133 (175)
T ss_pred             EeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCC
Confidence            899999999999999999999999999999999999884568888887667899999999999865321100  000112


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      .+...++..+++.++..+++++||++|.|++++|+.+++..
T Consensus       134 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         134 PVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             CccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence            35667888888888866899999999999999999998754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.87  E-value=2.3e-21  Score=132.63  Aligned_cols=109  Identities=33%  Similarity=0.648  Sum_probs=97.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..+++.+++.+|++|+|||++++.+++.+ ..|+..+.... +++|+++|+||+|+.....          
T Consensus        54 ~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----------  122 (164)
T smart00175       54 WDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENL-KNWLKELREYADPNVVIMLVGNKSDLEDQRQ----------  122 (164)
T ss_pred             EECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcccccC----------
Confidence            89999999999999999999999999999999999998 78999888766 6899999999999876432          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +..+.+..+++.+++ +++++||+++.|++++|+.+++.+.+
T Consensus       123 ~~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~l~~~i~~~~~~  163 (164)
T smart00175      123 VSREEAEAFAEEHGL-PFFETSAKTNTNVEEAFEELAREILK  163 (164)
T ss_pred             CCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            366778888888887 89999999999999999999998764

Rab GTPases are implicated in vesicle trafficking.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.86  E-value=3.1e-21  Score=132.66  Aligned_cols=108  Identities=30%  Similarity=0.509  Sum_probs=92.9

Q ss_pred             CCCCCcccc-cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccccccccCCCC
Q 031970            1 MNVIGQEDY-NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPG   76 (150)
Q Consensus         1 wDt~G~e~~-~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~~~~~~~~~~   76 (150)
                      |||+|++++ ......+++.+|++|+|||++++.+|+.+ ..|+..+....   .+.|+++|+||+|+.....       
T Consensus        52 ~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------  123 (165)
T cd04146          52 LDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLLHYRQ-------  123 (165)
T ss_pred             EECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchHHhCc-------
Confidence            999999963 45667789999999999999999999998 88988888754   3799999999999865433       


Q ss_pred             CCccCHHHHHHHHHHcCCcEEEEeccCCC-CCHHHHHHHHHHHHh
Q 031970           77 LVPVTTAQGEELRKQIGASYYIECSSKTQ-QNVKAVFDAAIKVVI  120 (150)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~~~~l~~~~~  120 (150)
                         +..+++..+++.++. +++++||+++ .|++++|+.+++.+.
T Consensus       124 ---v~~~~~~~~~~~~~~-~~~e~Sa~~~~~~v~~~f~~l~~~~~  164 (165)
T cd04146         124 ---VSTEEGEKLASELGC-LFFEVSAAEDYDGVHSVFHELCREVR  164 (165)
T ss_pred             ---cCHHHHHHHHHHcCC-EEEEeCCCCCchhHHHHHHHHHHHHh
Confidence               467888889999996 9999999999 599999999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>PLN03108 Rab family protein; Provisional

Probab=99.86  E-value=3.4e-21  Score=137.84  Aligned_cols=109  Identities=28%  Similarity=0.556  Sum_probs=97.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..+++.+++++|++|+|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+.+...          
T Consensus        60 ~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------  128 (210)
T PLN03108         60 WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRRA----------  128 (210)
T ss_pred             EeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccC----------
Confidence            99999999999999999999999999999999999998 88988776654 5799999999999876543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +..+++..+++.+++ +++++||+++.|++++|..+++.+..
T Consensus       129 ~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~e~f~~l~~~~~~  169 (210)
T PLN03108        129 VSTEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAAKIYK  169 (210)
T ss_pred             CCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            477888999999997 99999999999999999999988864

>PLN03118 Rab family protein; Provisional

Probab=99.86  E-value=4.9e-21  Score=137.01  Aligned_cols=112  Identities=29%  Similarity=0.581  Sum_probs=96.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++++|++|+|||++++.+|+.+...|...+....  .+.|+++|+||+|+.....         
T Consensus        67 ~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~---------  137 (211)
T PLN03118         67 WDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD---------  137 (211)
T ss_pred             EECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc---------
Confidence            89999999999999999999999999999999999998445766665443  3689999999999876443         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                       +..++...+++..++ +++++||+++.|++++|+.|++.+.+.+
T Consensus       138 -i~~~~~~~~~~~~~~-~~~e~SAk~~~~v~~l~~~l~~~~~~~~  180 (211)
T PLN03118        138 -VSREEGMALAKEHGC-LFLECSAKTRENVEQCFEELALKIMEVP  180 (211)
T ss_pred             -cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence             366777788888887 8999999999999999999999987654

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.86  E-value=5.5e-21  Score=130.83  Aligned_cols=107  Identities=35%  Similarity=0.650  Sum_probs=96.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..+++.+++++|++|+|||++++.+++.+ ..|+..+.... +++|+++++||+|+.....          
T Consensus        55 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------  123 (163)
T cd01860          55 WDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKA-KSWVKELQRNASPNIIIALVGNKADLESKRQ----------  123 (163)
T ss_pred             EeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccCc----------
Confidence            89999999999999999999999999999999999998 89999888766 5799999999999875433          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      +..++...+++.++. +++++||++|.|+.++|+.+++.+
T Consensus       124 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         124 VSTEEAQEYADENGL-LFFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHh
Confidence            366788888888886 899999999999999999999876

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.86  E-value=6e-21  Score=139.66  Aligned_cols=110  Identities=28%  Similarity=0.437  Sum_probs=93.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh----------CCCCCEEEEeeCCCccccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY----------SPGVPVVLVGTKLDLREDKHY   70 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~----------~~~~piilv~nK~D~~~~~~~   70 (150)
                      |||+|+++|..+++.++.++|++|+|||++++.||+.+ ..|...+...          ..++|+|+|+||+|+..... 
T Consensus        53 ~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~-  130 (247)
T cd04143          53 LDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEV-CRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE-  130 (247)
T ss_pred             EECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc-
Confidence            99999999999999999999999999999999999998 8888888643          24799999999999975332 


Q ss_pred             ccCCCCCCccCHHHHHHHHHHc-CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           71 LADHPGLVPVTTAQGEELRKQI-GASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                               +..+++.+++... ++ .++++||+++.|++++|+.|+.....+
T Consensus       131 ---------v~~~ei~~~~~~~~~~-~~~evSAktg~gI~elf~~L~~~~~~p  173 (247)
T cd04143         131 ---------VQRDEVEQLVGGDENC-AYFEVSAKKNSNLDEMFRALFSLAKLP  173 (247)
T ss_pred             ---------cCHHHHHHHHHhcCCC-EEEEEeCCCCCCHHHHHHHHHHHhccc
Confidence                     3667777776543 44 899999999999999999999977443

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01861 Rab6 Rab6 subfamily

Probab=99.86  E-value=5.7e-21  Score=130.52  Aligned_cols=106  Identities=34%  Similarity=0.599  Sum_probs=94.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..+++.+++++|++++|||++++.+|+.+ ..|+..+....+ +.|+++|+||+|+.....          
T Consensus        54 ~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----------  122 (161)
T cd01861          54 WDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ----------  122 (161)
T ss_pred             EECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEEChhccccCc----------
Confidence            99999999999999999999999999999999999998 899998876553 699999999999864433          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                      +..++...+++..++ +++++||+++.|++++|+.+++.
T Consensus       123 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         123 VSTEEGEKKAKELNA-MFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             cCHHHHHHHHHHhCC-EEEEEeCCCCCCHHHHHHHHHHh
Confidence            366778888888886 89999999999999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01892 Miro2 Miro2 subfamily

Probab=99.85  E-value=5e-21  Score=132.57  Aligned_cols=110  Identities=19%  Similarity=0.215  Sum_probs=92.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||+|++++..++..+++++|++++|||++++.+++.+ ..|+..+... .++|+++|+||+|+.+...          +
T Consensus        59 ~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~-~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~----------~  126 (169)
T cd01892          59 REVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYC-AEVYKKYFML-GEIPCLFVAAKADLDEQQQ----------R  126 (169)
T ss_pred             EecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHH-HHHHHHhccC-CCCeEEEEEEccccccccc----------c
Confidence            89999999999999999999999999999999999987 7888766432 4799999999999865432          1


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ...+...+++.+++..++++||+++.|+.++|+.+++.+..+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~~~  168 (169)
T cd01892         127 YEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQYP  168 (169)
T ss_pred             cccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhhCC
Confidence            334556777888875579999999999999999999988754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04123 Rab21 Rab21 subfamily

Probab=99.85  E-value=1.5e-20  Score=128.16  Aligned_cols=107  Identities=35%  Similarity=0.618  Sum_probs=95.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|++.|..+++.+++++|++++|||++++.+++.+ ..|+..+....+ ++|+++|+||+|+.....          
T Consensus        54 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~----------  122 (162)
T cd04123          54 WDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLERQRV----------  122 (162)
T ss_pred             EECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------
Confidence            89999999999999999999999999999999999998 889988887664 699999999999875433          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      +..+....+++..+. +++++||+++.|++++++.+.+.+
T Consensus       123 ~~~~~~~~~~~~~~~-~~~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         123 VSKSEAEEYAKSVGA-KHFETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             CCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHh
Confidence            366777788888887 899999999999999999998865

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01862 Rab7 Rab7 subfamily

Probab=99.85  E-value=1.7e-20  Score=129.41  Aligned_cols=111  Identities=29%  Similarity=0.529  Sum_probs=96.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-----CCCEEEEeeCCCcccccccccCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-----GVPVVLVGTKLDLREDKHYLADHP   75 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~D~~~~~~~~~~~~   75 (150)
                      |||||++.|..++..+++++|++|+|||++++.+++.+ ..|...+.....     ++|+++|+||+|+.....      
T Consensus        54 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------  126 (172)
T cd01862          54 WDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESL-DSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ------  126 (172)
T ss_pred             EeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCccCCCCceEEEEEECcccccccc------
Confidence            89999999999999999999999999999999999987 788877665443     799999999999975332      


Q ss_pred             CCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           76 GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                          +..++...+++..+..+++++||++|.|++++|+.+++.+++.
T Consensus       127 ----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~  169 (172)
T cd01862         127 ----VSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALEQ  169 (172)
T ss_pred             ----cCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence                2667778888888855999999999999999999999988765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04148 RGK RGK subfamily

Probab=99.85  E-value=7.8e-21  Score=137.01  Aligned_cols=107  Identities=23%  Similarity=0.391  Sum_probs=91.7

Q ss_pred             CCCCCccccccccccccc-CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYR-GADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~-~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      |||+|++.  .+...+++ ++|++++|||++++.+|+.+ ..|+..+.+..  .+.|+|+|+||+|+.....        
T Consensus        55 ~Dt~G~~~--~~~~~~~~~~ad~iilV~d~td~~S~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~--------  123 (221)
T cd04148          55 IDHWEQEM--WTEDSCMQYQGDAFVVVYSVTDRSSFERA-SELRIQLRRNRQLEDRPIILVGNKSDLARSRE--------  123 (221)
T ss_pred             EeCCCcch--HHHhHHhhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhccccce--------
Confidence            89999993  34456677 99999999999999999998 88988887754  4799999999999876443        


Q ss_pred             CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                        +..++...++..+++ +++++||+++.||+++|+.+++.+..
T Consensus       124 --v~~~~~~~~a~~~~~-~~~e~SA~~~~gv~~l~~~l~~~~~~  164 (221)
T cd04148         124 --VSVQEGRACAVVFDC-KFIETSAGLQHNVDELLEGIVRQIRL  164 (221)
T ss_pred             --ecHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHh
Confidence              466777888888887 89999999999999999999998864

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01863 Rab18 Rab18 subfamily

Probab=99.85  E-value=1.9e-20  Score=128.01  Aligned_cols=105  Identities=30%  Similarity=0.591  Sum_probs=93.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|..++..+++++|++++|||++++.+++.+ ..|+..+.+..  .+.|+++|+||+|+....          
T Consensus        54 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~----------  122 (161)
T cd01863          54 WDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNL-ETWLNELETYSTNNDIVKMLVGNKIDKENRE----------  122 (161)
T ss_pred             EECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhH-HHHHHHHHHhCCCCCCcEEEEEECCcccccc----------
Confidence            89999999999999999999999999999999999998 88998888765  479999999999987433          


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                       +..++...+++..++ +++++||++|.|++++++.+++.
T Consensus       123 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         123 -VTREEGLKFARKHNM-LFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             -cCHHHHHHHHHHcCC-EEEEEecCCCCCHHHHHHHHHHh
Confidence             266778888888887 89999999999999999999875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04149 Arf6 Arf6 subfamily

Probab=99.84  E-value=5.9e-21  Score=132.16  Aligned_cols=103  Identities=12%  Similarity=0.133  Sum_probs=82.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|..+++.++++||++|+|||++++.+++.+ ..|+..+...  .+++|++||+||+|+...           
T Consensus        58 ~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-----------  125 (168)
T cd04149          58 WDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEA-RQELHRIINDREMRDALLLVFANKQDLPDA-----------  125 (168)
T ss_pred             EECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHH-HHHHHHHhcCHhhcCCcEEEEEECcCCccC-----------
Confidence            99999999999999999999999999999999999988 5665555432  257999999999998642           


Q ss_pred             ccCHHHHHHHHHH-----cCCcEEEEeccCCCCCHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQ-----IGASYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        79 ~v~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                       +..+++..++..     ..+ +++++||++|.|+.++|+.|.+
T Consensus       126 -~~~~~i~~~~~~~~~~~~~~-~~~~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         126 -MKPHEIQEKLGLTRIRDRNW-YVQPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             -CCHHHHHHHcCCCccCCCcE-EEEEeeCCCCCChHHHHHHHhc
Confidence             144555554421     223 6899999999999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.84  E-value=1.7e-21  Score=134.29  Aligned_cols=108  Identities=13%  Similarity=0.211  Sum_probs=87.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||+|+++|..+++.++++||++|+|||++++.++..+ ..|+..+....+++|+++|+||.|+......       ..+
T Consensus        49 ~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~-------~~i  120 (164)
T cd04162          49 LEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPAARSV-------QEI  120 (164)
T ss_pred             EECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcCCCCH-------HHH
Confidence            99999999999999999999999999999999999988 7888877655578999999999998654321       000


Q ss_pred             C-HHHHHHHHHHcCCcEEEEeccCC------CCCHHHHHHHHHH
Q 031970           81 T-TAQGEELRKQIGASYYIECSSKT------QQNVKAVFDAAIK  117 (150)
Q Consensus        81 ~-~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~~~~~~l~~  117 (150)
                      . ...+..+++..++ .++++||++      ++||.++|+.++.
T Consensus       121 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         121 HKELELEPIARGRRW-ILQGTSLDDDGSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             HHHhCChhhcCCCce-EEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence            0 0123456666676 889988888      9999999998874

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.84  E-value=2.3e-20  Score=130.04  Aligned_cols=125  Identities=30%  Similarity=0.507  Sum_probs=101.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|..++..++..++++++|||+++..+++.+ ..|...+.+..  .+.|+++|+||+|+...+.         
T Consensus        54 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~---------  123 (180)
T cd04137          54 VDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ---------  123 (180)
T ss_pred             EECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEchhhhhcCc---------
Confidence            89999999999999999999999999999999999998 77766666543  4689999999999875432         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcchhhhhccCCCceee
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN  139 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~c~~~  139 (150)
                       +...+...+++.++. +++++||+++.|+.++|..+.+.+...+....  ...+..|.+|
T Consensus       124 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~~~~--~~~~~~~~~~  180 (180)
T cd04137         124 -VSTEEGKELAESWGA-AFLESSARENENVEEAFELLIEEIEKVENPLD--PGQKKKCSIM  180 (180)
T ss_pred             -cCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHhcCCCC--CCCCCCceeC
Confidence             255566777888886 99999999999999999999999876654332  2245567665

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.84  E-value=1.2e-20  Score=132.23  Aligned_cols=105  Identities=11%  Similarity=0.165  Sum_probs=83.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      ||||||++|..+++.|++++|++|+|||++++.++..+ ..++..+...  .++.|++||+||.|+....          
T Consensus        66 ~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~-~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~----------  134 (181)
T PLN00223         66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEA-RDELHRMLNEDELRDAVLLVFANKQDLPNAM----------  134 (181)
T ss_pred             EECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHH-HHHHHHHhcCHhhCCCCEEEEEECCCCCCCC----------
Confidence            99999999999999999999999999999999999988 5555554322  2579999999999986532          


Q ss_pred             ccCHHHHHHHHHHcCCc-------EEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGAS-------YYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~-------~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                        ..++...   ..++.       .++++||++|+||.++|+.|++.+..
T Consensus       135 --~~~~~~~---~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~  179 (181)
T PLN00223        135 --NAAEITD---KLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAN  179 (181)
T ss_pred             --CHHHHHH---HhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence              3233332   22321       35689999999999999999988764

>cd01893 Miro1 Miro1 subfamily

Probab=99.84  E-value=3.6e-20  Score=127.71  Aligned_cols=113  Identities=27%  Similarity=0.404  Sum_probs=90.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||++++...+..+++++|++++|||++++.+++.+...|.+.+....++.|+++|+||+|+.+....        ..
T Consensus        52 ~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~--------~~  123 (166)
T cd01893          52 VDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ--------AG  123 (166)
T ss_pred             EeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccch--------hH
Confidence            9999999988877888899999999999999999998734788888876678999999999999765421        00


Q ss_pred             CHHHHHHHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           81 TTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        81 ~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      .......++..++ ..+++++||+++.|++++|+.+.+.+.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~  165 (166)
T cd01893         124 LEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH  165 (166)
T ss_pred             HHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence            1233334444443 2389999999999999999999988765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00157 Rho Rho (Ras homology) family

Probab=99.84  E-value=4.4e-20  Score=127.19  Aligned_cols=117  Identities=54%  Similarity=0.964  Sum_probs=97.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccC-CCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD-HPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~-~~~~~~   79 (150)
                      |||||+++|..+++.+++.+|++++|||++++.++......|+..+....++.|+++|+||+|+......... ......
T Consensus        53 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~  132 (171)
T cd00157          53 WDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEP  132 (171)
T ss_pred             EeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCc
Confidence            8999999999999999999999999999999999998867788888887778999999999998765431000 000122


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                      +...+...++..+++.+++++||+++.|++++|+.+++
T Consensus       133 v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         133 ITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             cCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence            45677888888898779999999999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.84  E-value=5e-20  Score=125.89  Aligned_cols=108  Identities=31%  Similarity=0.548  Sum_probs=94.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|..++..+++.++++++|||++++.+++.. ..|...+....  .++|+++|+||+|+.....         
T Consensus        53 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~---------  122 (164)
T cd04139          53 LDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTAT-AEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ---------  122 (164)
T ss_pred             EECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEccccccccc---------
Confidence            89999999999999999999999999999999999998 78887777763  4799999999999876322         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                       +.......+++.+++ +++++||+++.|++++|+.+++.+.
T Consensus       123 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~  162 (164)
T cd04139         123 -VSSEEAANLARQWGV-PYVETSAKTRQNVEKAFYDLVREIR  162 (164)
T ss_pred             -cCHHHHHHHHHHhCC-eEEEeeCCCCCCHHHHHHHHHHHHH
Confidence             256677788888887 9999999999999999999998775

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04158 ARD1 ARD1 subfamily

Probab=99.84  E-value=2.7e-20  Score=128.74  Aligned_cols=110  Identities=13%  Similarity=0.163  Sum_probs=90.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||++++..++..+++++|++++|||++++.++.++ ..|+..+....  .+.|+++|+||.|+...           
T Consensus        48 ~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-----------  115 (169)
T cd04158          48 WDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEA-HSELAKLLTEKELRDALLLIFANKQDVAGA-----------  115 (169)
T ss_pred             EECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHH-HHHHHHHhcChhhCCCCEEEEEeCcCcccC-----------
Confidence            89999999999999999999999999999999999998 77777776432  46899999999998642           


Q ss_pred             ccCHHHHHHHHHHcC-----CcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           79 PVTTAQGEELRKQIG-----ASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                       +..+++..+++..+     ...++++||++|.||.++|+.|++.+.+.+
T Consensus       116 -~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~~  164 (169)
T cd04158         116 -LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAG  164 (169)
T ss_pred             -CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhcc
Confidence             25566666654322     126789999999999999999998887654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.83  E-value=2.5e-20  Score=130.62  Aligned_cols=110  Identities=20%  Similarity=0.255  Sum_probs=87.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|..+++.+++++|++++|||++++.+++.+ ..|+..+....  .+.|+++|+||+|+....          
T Consensus        57 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~----------  125 (183)
T cd04152          57 WDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEA-KTELHKITRFSENQGVPVLVLANKQDLPNAL----------  125 (183)
T ss_pred             EECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHhhhhcCCCcEEEEEECcCccccC----------
Confidence            99999999999999999999999999999999999887 77877766543  469999999999986431          


Q ss_pred             ccCHHHHHHHHHH--c---CCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           79 PVTTAQGEELRKQ--I---GASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        79 ~v~~~~~~~~~~~--~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                        ...+...+...  .   ...+++++||+++.|++++|+.|++.+.+..
T Consensus       126 --~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~  173 (183)
T cd04152         126 --SVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRR  173 (183)
T ss_pred             --CHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHH
Confidence              33334433321  1   1126889999999999999999999987543

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.83  E-value=8e-20  Score=129.54  Aligned_cols=112  Identities=25%  Similarity=0.403  Sum_probs=91.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|..+++.+++++|++|+|||++++.+++.+ ..|+..+....  .++|+++|+||.|+......        
T Consensus        52 ~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~--------  122 (198)
T cd04147          52 LDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSLEEERQ--------  122 (198)
T ss_pred             EECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEcccccccccc--------
Confidence            89999999999999999999999999999999999998 88988877654  36999999999998653211        


Q ss_pred             ccCHHHHHHHHH-HcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           79 PVTTAQGEELRK-QIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        79 ~v~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                       +.......... .++. +++++||++|.|++++|+.+++.+...+
T Consensus       123 -v~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  166 (198)
T cd04147         123 -VPAKDALSTVELDWNC-GFVETSAKDNENVLEVFKELLRQANLPY  166 (198)
T ss_pred             -ccHHHHHHHHHhhcCC-cEEEecCCCCCCHHHHHHHHHHHhhccc
Confidence             23444443333 4454 8999999999999999999999876443

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.82  E-value=3e-20  Score=127.47  Aligned_cols=103  Identities=12%  Similarity=0.156  Sum_probs=79.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|..+++.++++||++|+|||++++.+++.+ ..|+..+...  ..+.|+++++||+|+....          
T Consensus        49 ~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----------  117 (159)
T cd04150          49 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEA-REELQRMLNEDELRDAVLLVFANKQDLPNAM----------  117 (159)
T ss_pred             EECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHhcHHhcCCCEEEEEECCCCCCCC----------
Confidence            99999999999999999999999999999999999998 5555554332  2468999999999986431          


Q ss_pred             ccCHHHH-HHHH----HHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031970           79 PVTTAQG-EELR----KQIGASYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        79 ~v~~~~~-~~~~----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                        ...+. ..+.    ...++ .++++||++|.|++++|+.|.+
T Consensus       118 --~~~~i~~~~~~~~~~~~~~-~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         118 --SAAEVTDKLGLHSLRNRNW-YIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             --CHHHHHHHhCccccCCCCE-EEEEeeCCCCCCHHHHHHHHhc
Confidence              22222 2221    11122 5789999999999999998864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.82  E-value=6.8e-20  Score=127.55  Aligned_cols=106  Identities=11%  Similarity=0.116  Sum_probs=82.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..|+++||++|+|||++++.+++.. ..|+..+...  .+++|+++|+||.|+.+..          
T Consensus        62 ~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~----------  130 (175)
T smart00177       62 WDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEA-REELHRMLNEDELRDAVILVFANKQDLPDAM----------  130 (175)
T ss_pred             EECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHhhCHhhcCCcEEEEEeCcCcccCC----------
Confidence            99999999999999999999999999999999999998 5665555432  2579999999999986532          


Q ss_pred             ccCHHHHHHHH-----HHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           79 PVTTAQGEELR-----KQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        79 ~v~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                        ...+.....     +...+ .++++||++|.|+.++|+.|.+.+.
T Consensus       131 --~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~e~~~~l~~~~~  174 (175)
T smart00177      131 --KAAEITEKLGLHSIRDRNW-YIQPTCATSGDGLYEGLTWLSNNLK  174 (175)
T ss_pred             --CHHHHHHHhCccccCCCcE-EEEEeeCCCCCCHHHHHHHHHHHhc
Confidence              222222221     11222 5778999999999999999987653

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04114 Rab30 Rab30 subfamily

Probab=99.82  E-value=1.5e-19  Score=124.41  Aligned_cols=107  Identities=28%  Similarity=0.569  Sum_probs=92.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|...+..+++.+|++++|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.....          
T Consensus        61 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~----------  129 (169)
T cd04114          61 WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAERRE----------  129 (169)
T ss_pred             EECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------
Confidence            89999999999989999999999999999999999988 899988877653 699999999999865433          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      +.......+.+.... +++++||++|.|+.++|+.+++.+
T Consensus       130 i~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         130 VSQQRAEEFSDAQDM-YYLETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             cCHHHHHHHHHHcCC-eEEEeeCCCCCCHHHHHHHHHHHh
Confidence            355666677777665 899999999999999999999765

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.82  E-value=8.6e-21  Score=129.53  Aligned_cols=110  Identities=30%  Similarity=0.462  Sum_probs=103.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||+|||+|..+...||++|.+.++||+.+|..||+.+ ..|.+.+....+++|.++|-||+|+.++..          +
T Consensus        74 WdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~-~~w~~kv~~e~~~IPtV~vqNKIDlveds~----------~  142 (246)
T KOG4252|consen   74 WDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEAT-LEWYNKVQKETERIPTVFVQNKIDLVEDSQ----------M  142 (246)
T ss_pred             HHhccchhHHHHHHHHhccccceEEEEecccHHHHHHH-HHHHHHHHHHhccCCeEEeeccchhhHhhh----------c
Confidence            99999999999999999999999999999999999998 899999999889999999999999998765          4


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ...++..+++..++ .++.+|++...|+..+|..|+..+.++
T Consensus       143 ~~~evE~lak~l~~-RlyRtSvked~NV~~vF~YLaeK~~q~  183 (246)
T KOG4252|consen  143 DKGEVEGLAKKLHK-RLYRTSVKEDFNVMHVFAYLAEKLTQQ  183 (246)
T ss_pred             chHHHHHHHHHhhh-hhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            88899999999997 999999999999999999999888654

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.81  E-value=1.2e-19  Score=127.16  Aligned_cols=108  Identities=17%  Similarity=0.195  Sum_probs=83.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|..+++.+++++|++|+|||++++.+++.. ..++..+...  ..+.|+++|+||.|+....          
T Consensus        66 ~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~----------  134 (182)
T PTZ00133         66 WDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDA-REELERMLSEDELRDAVLLVFANKQDLPNAM----------  134 (182)
T ss_pred             EECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC----------
Confidence            99999999999999999999999999999999999988 5555555332  2468999999999986432          


Q ss_pred             ccCHHHHHHHH-----HHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           79 PVTTAQGEELR-----KQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        79 ~v~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                        ...+.....     +..++ .++++||++|.|+.++|+.|.+.+...
T Consensus       135 --~~~~i~~~l~~~~~~~~~~-~~~~~Sa~tg~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        135 --STTEVTEKLGLHSVRQRNW-YIQGCCATTAQGLYEGLDWLSANIKKS  180 (182)
T ss_pred             --CHHHHHHHhCCCcccCCcE-EEEeeeCCCCCCHHHHHHHHHHHHHHh
Confidence              222222211     11122 567999999999999999999887654

>cd04154 Arl2 Arl2 subfamily

Probab=99.81  E-value=1.3e-19  Score=125.60  Aligned_cols=103  Identities=17%  Similarity=0.194  Sum_probs=83.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||++.+..++..+++++|++++|||++++.++... ..|+..+...  ..+.|+++|+||+|+.+..          
T Consensus        63 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------  131 (173)
T cd04154          63 WDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDC-KRELKELLQEERLAGATLLILANKQDLPGAL----------  131 (173)
T ss_pred             EECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcccccCC----------
Confidence            89999999999999999999999999999999999887 6777666432  2579999999999986532          


Q ss_pred             ccCHHHHHHHHH-----HcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031970           79 PVTTAQGEELRK-----QIGASYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        79 ~v~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                        ..+++..+.+     ..++ +++++||++|.|++++|+.++.
T Consensus       132 --~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         132 --SEEEIREALELDKISSHHW-RIQPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             --CHHHHHHHhCccccCCCce-EEEeccCCCCcCHHHHHHHHhc
Confidence              3344444442     2344 8999999999999999998863

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd00876 Ras Ras family

Probab=99.80  E-value=4.2e-19  Score=120.74  Aligned_cols=107  Identities=32%  Similarity=0.636  Sum_probs=94.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC--CCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      ||++|++++..++..+++++|++++|||++++.+++++ ..|...+.....  +.|+++|+||+|+.....         
T Consensus        52 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---------  121 (160)
T cd00876          52 LDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEI-KGYREQILRVKDDEDIPIVLVGNKCDLENERQ---------  121 (160)
T ss_pred             EECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCcccccce---------
Confidence            89999999999999999999999999999999999998 777777776554  799999999999876433         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                       +..+.+..++..++. +++++||+++.|+.++|+.|++.+
T Consensus       122 -~~~~~~~~~~~~~~~-~~~~~S~~~~~~i~~l~~~l~~~i  160 (160)
T cd00876         122 -VSKEEGKALAKEWGC-PFIETSAKDNINIDEVFKLLVREI  160 (160)
T ss_pred             -ecHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHhhC
Confidence             367788888888886 999999999999999999998753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04157 Arl6 Arl6 subfamily

Probab=99.80  E-value=2e-19  Score=122.91  Aligned_cols=103  Identities=17%  Similarity=0.183  Sum_probs=80.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccccccccCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPG   76 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~D~~~~~~~~~~~~~   76 (150)
                      |||||+++|..++..+++++|++|+|+|++++.++..+ ..|+..+.+..    .++|+++|+||+|+....        
T Consensus        50 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--------  120 (162)
T cd04157          50 FDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVV-KDELELLLNHPDIKHRRVPILFFANKMDLPDAL--------  120 (162)
T ss_pred             EECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHH-HHHHHHHHcCcccccCCCCEEEEEeCccccCCC--------
Confidence            89999999999999999999999999999999999887 67777665431    479999999999986532        


Q ss_pred             CCccCHHHHHHHHH-----HcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031970           77 LVPVTTAQGEELRK-----QIGASYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        77 ~~~v~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                          ...+......     ...+ +++++||++|.|++++|+.|.+
T Consensus       121 ----~~~~~~~~l~~~~~~~~~~-~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         121 ----TAVKITQLLGLENIKDKPW-HIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             ----CHHHHHHHhCCccccCceE-EEEEeeCCCCCchHHHHHHHhc
Confidence                2222222111     1122 5899999999999999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.80  E-value=9.6e-19  Score=125.43  Aligned_cols=110  Identities=24%  Similarity=0.453  Sum_probs=94.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||+|+++|..++..++++++++++|||+++..++..+ ..|+..+....++.|+++++||+|+.....           
T Consensus        63 ~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~-----------  130 (215)
T PTZ00132         63 WDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKDRQV-----------  130 (215)
T ss_pred             EECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccCccccC-----------
Confidence            89999999999999999999999999999999999998 899999887777899999999999864321           


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  124 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  124 (150)
                      ..+ ...+++..++ .++++||+++.|++++|..+++.+...+.
T Consensus       131 ~~~-~~~~~~~~~~-~~~e~Sa~~~~~v~~~f~~ia~~l~~~p~  172 (215)
T PTZ00132        131 KAR-QITFHRKKNL-QYYDISAKSNYNFEKPFLWLARRLTNDPN  172 (215)
T ss_pred             CHH-HHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHhhccc
Confidence            223 3456777776 89999999999999999999999876543

>cd00154 Rab Rab family

Probab=99.80  E-value=6.6e-19  Score=119.06  Aligned_cols=104  Identities=35%  Similarity=0.733  Sum_probs=92.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      ||+||++.+..++..+++++|++++|+|++++.+++.+ ..|+..+.... .+.|+++++||+|+.....          
T Consensus        54 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------  122 (159)
T cd00154          54 WDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENL-DKWLKELKEYAPENIPIILVGNKIDLEDQRQ----------  122 (159)
T ss_pred             EecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccccccc----------
Confidence            89999999999999999999999999999999999998 88999888876 5799999999999863322          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHH
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI  116 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  116 (150)
                      +..++...++..++. +++++||+++.|++++|+.++
T Consensus       123 ~~~~~~~~~~~~~~~-~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         123 VSTEEAQQFAKENGL-LFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ccHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHh
Confidence            367888888888887 999999999999999999886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01890 LepA LepA subfamily

Probab=99.79  E-value=4.8e-19  Score=123.08  Aligned_cols=104  Identities=15%  Similarity=0.225  Sum_probs=82.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|..++..+++++|++|+|||+++..+++.. ..|.....   .++|+++|+||+|+.+..            
T Consensus        72 ~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~------------  135 (179)
T cd01890          72 IDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALE---NNLEIIPVINKIDLPSAD------------  135 (179)
T ss_pred             EECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHH---cCCCEEEEEECCCCCcCC------------
Confidence            89999999999999999999999999999998777765 55543332   368999999999986421            


Q ss_pred             CHHHHHHHHHHcCCc--EEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           81 TTAQGEELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      .......+++.+++.  +++++||++|.|++++|+.+.+.+.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         136 PERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             HHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence            223344556666652  4899999999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.78  E-value=8.2e-19  Score=121.92  Aligned_cols=103  Identities=17%  Similarity=0.170  Sum_probs=80.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|...++.+++++|++++|+|++++.++... ..++..+.+..  .+.|+++++||+|+....          
T Consensus        64 ~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~-~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~----------  132 (174)
T cd04153          64 WDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLT-KEELYKMLAHEDLRKAVLLVLANKQDLKGAM----------  132 (174)
T ss_pred             EECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHH-HHHHHHHHhchhhcCCCEEEEEECCCCCCCC----------
Confidence            89999999999999999999999999999999999887 55555554332  469999999999986531          


Q ss_pred             ccCHHHHH-HHH----HHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031970           79 PVTTAQGE-ELR----KQIGASYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        79 ~v~~~~~~-~~~----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                        ..++.. .+.    +..++ +++++||+++.|++++|+.|++
T Consensus       133 --~~~~i~~~l~~~~~~~~~~-~~~~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         133 --TPAEISESLGLTSIRDHTW-HIQGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             --CHHHHHHHhCcccccCCce-EEEecccCCCCCHHHHHHHHhc
Confidence              222222 221    23344 7899999999999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04151 Arl1 Arl1 subfamily

Probab=99.77  E-value=3.6e-19  Score=121.60  Aligned_cols=104  Identities=13%  Similarity=0.146  Sum_probs=78.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..+++.+++++|++|+|+|++++.++......|...+.... .+.|+++|+||+|+....           
T Consensus        48 ~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~-----------  116 (158)
T cd04151          48 WDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL-----------  116 (158)
T ss_pred             EECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC-----------
Confidence            89999999999999999999999999999999888776333433333222 479999999999986432           


Q ss_pred             cCHHHHH-HHH----HHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031970           80 VTTAQGE-ELR----KQIGASYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        80 v~~~~~~-~~~----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                       ...+.. .+.    ...+. +++++||+++.|+.++|+.|++
T Consensus       117 -~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         117 -SEAEISEKLGLSELKDRTW-SIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             -CHHHHHHHhCccccCCCcE-EEEEeeccCCCCHHHHHHHHhc
Confidence             112221 111    11223 6999999999999999999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.77  E-value=1.5e-18  Score=118.46  Aligned_cols=103  Identities=22%  Similarity=0.267  Sum_probs=80.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|++++..++..+++++|++|+|+|++++.++..+ ..|+..+.+..  .+.|+++|+||+|+....          
T Consensus        49 ~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----------  117 (160)
T cd04156          49 WDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDES-QKELKHILKNEHIKGVPVVLLANKQDLPGAL----------  117 (160)
T ss_pred             EECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHH-HHHHHHHHhchhhcCCCEEEEEECcccccCc----------
Confidence            89999999999999999999999999999999999887 66666654432  479999999999986421          


Q ss_pred             ccCHHHHHH------HHHHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031970           79 PVTTAQGEE------LRKQIGASYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        79 ~v~~~~~~~------~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                        ...+...      ++...++ +++++||++|.|++++|+.|++
T Consensus       118 --~~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         118 --TAEEITRRFKLKKYCSDRDW-YVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             --CHHHHHHHcCCcccCCCCcE-EEEecccccCCChHHHHHHHhc
Confidence              2222221      2222233 7899999999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.77  E-value=2.5e-18  Score=118.12  Aligned_cols=104  Identities=16%  Similarity=0.265  Sum_probs=83.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++++|++++|+|++++.++... ..|+..+.+..  .+.|+++++||+|+....          
T Consensus        55 ~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~----------  123 (167)
T cd04160          55 WDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEES-KSALEKVLRNEALEGVPLLILANKQDLPDAL----------  123 (167)
T ss_pred             EECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHH-HHHHHHHHhChhhcCCCEEEEEEccccccCC----------
Confidence            89999999999999999999999999999999999887 67776665532  479999999999986532          


Q ss_pred             ccCHHHHHHHHHHc------CCcEEEEeccCCCCCHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQI------GASYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        79 ~v~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                        ...+...+....      ...+++++||++|.|++++++.|++
T Consensus       124 --~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         124 --SVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             --CHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence              334444443321      1137999999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.76  E-value=3.1e-18  Score=116.79  Aligned_cols=103  Identities=19%  Similarity=0.222  Sum_probs=82.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..+++.+++++|++++|||++++.++... ..|+..+....  .+.|+++|+||+|+....          
T Consensus        48 ~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~----------  116 (158)
T cd00878          48 WDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEA-KEELHKLLNEEELKGVPLLIFANKQDLPGAL----------  116 (158)
T ss_pred             EECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEeeccCCcccc----------
Confidence            99999999999999999999999999999999999988 67766665543  479999999999987643          


Q ss_pred             ccCHHHHHHHHH-----HcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031970           79 PVTTAQGEELRK-----QIGASYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        79 ~v~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                        ...+......     ...+ +++++||++|.|++++|+.|..
T Consensus       117 --~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         117 --SVSELIEKLGLEKILGRRW-HIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             --CHHHHHHhhChhhccCCcE-EEEEeeCCCCCCHHHHHHHHhh
Confidence              2223322222     2233 8999999999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.76  E-value=1.9e-18  Score=123.00  Aligned_cols=98  Identities=22%  Similarity=0.308  Sum_probs=78.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--------------------CCCCEEEEee
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--------------------PGVPVVLVGT   60 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--------------------~~~piilv~n   60 (150)
                      |||+|+++|..+++.+++++|++|+|||++++.||+.+ ..|+.++....                    +++|++||||
T Consensus        59 wDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGn  137 (202)
T cd04102          59 WDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGT  137 (202)
T ss_pred             EecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEE
Confidence            99999999999999999999999999999999999998 89999987531                    3699999999


Q ss_pred             CCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCC
Q 031970           61 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ  106 (150)
Q Consensus        61 K~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  106 (150)
                      |.|+.+....      ...........++.+.+. +.+++++++..
T Consensus       138 K~Dl~~~r~~------~~~~~~~~~~~ia~~~~~-~~i~~~c~~~~  176 (202)
T cd04102         138 KLDQIPEKES------SGNLVLTARGFVAEQGNA-EEINLNCTNGR  176 (202)
T ss_pred             Cccchhhccc------chHHHhhHhhhHHHhcCC-ceEEEecCCcc
Confidence            9999765321      001122335567888887 88888888653

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd00879 Sar1 Sar1 subfamily

Probab=99.75  E-value=5.2e-18  Score=119.14  Aligned_cols=106  Identities=18%  Similarity=0.234  Sum_probs=85.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||++++..++..+++++|++++|+|+++..++... ..|+..+.+..  .+.|+++++||+|+...           
T Consensus        68 ~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~-~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~-----------  135 (190)
T cd00879          68 FDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQES-KEELDSLLSDEELANVPFLILGNKIDLPGA-----------  135 (190)
T ss_pred             EECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHH-HHHHHHHHcCccccCCCEEEEEeCCCCCCC-----------
Confidence            89999999999999999999999999999999999887 56666665432  46999999999998642           


Q ss_pred             ccCHHHHHHHHHHc---------------CCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQI---------------GASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        79 ~v~~~~~~~~~~~~---------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                       +..++....+..+               ...+++++||+++.|++++|+.|++.+
T Consensus       136 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         136 -VSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             -cCHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence             2455666555431               112689999999999999999998753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.75  E-value=5.8e-18  Score=116.94  Aligned_cols=110  Identities=15%  Similarity=0.169  Sum_probs=83.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||++++..+++.|++++|++|+|||++++.+++.+ ..|+..+.+..  .++|+++|+||.|+.......      .
T Consensus        48 ~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~------~  120 (167)
T cd04161          48 FDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEV-KEILRELLQHPRVSGKPILVLANKQDKKNALLGA------D  120 (167)
T ss_pred             EECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHH-HHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHH------H
Confidence            89999999999999999999999999999999999998 78888776543  479999999999987643210      0


Q ss_pred             ccCHHHHHHHHHHcCC-cEEEEeccCCC------CCHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQIGA-SYYIECSSKTQ------QNVKAVFDAAIK  117 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~-~~~~~~Sa~~~------~~i~~~~~~l~~  117 (150)
                      -+....+..+++..+. .+++++||++|      .|+.+.|++|+.
T Consensus       121 i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         121 VIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             HHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence            0000111233333332 26788999998      899999999864

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.74  E-value=2.7e-17  Score=109.79  Aligned_cols=114  Identities=20%  Similarity=0.267  Sum_probs=100.2

Q ss_pred             CCCCCcccc-cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCC
Q 031970            1 MNVIGQEDY-NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         1 wDt~G~e~~-~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      |||+|...+ ..+.++|++-+|+|++||+..|++||+.+ +-+...|.+..  .++||++++||+|+.+...        
T Consensus        65 yDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~--------  135 (198)
T KOG3883|consen   65 YDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE--------  135 (198)
T ss_pred             eecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhcccchh--------
Confidence            699998877 66889999999999999999999999998 77777777654  3799999999999876544        


Q ss_pred             CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcch
Q 031970           78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ  126 (150)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  126 (150)
                        +....++.||+...+ ..++++|.+..++.+.|..++..+..+..+.
T Consensus       136 --vd~d~A~~Wa~rEkv-kl~eVta~dR~sL~epf~~l~~rl~~pqskS  181 (198)
T KOG3883|consen  136 --VDMDVAQIWAKREKV-KLWEVTAMDRPSLYEPFTYLASRLHQPQSKS  181 (198)
T ss_pred             --cCHHHHHHHHhhhhe-eEEEEEeccchhhhhHHHHHHHhccCCcccc
Confidence              588899999999997 9999999999999999999999998776544

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.72  E-value=3.6e-17  Score=114.72  Aligned_cols=105  Identities=13%  Similarity=0.147  Sum_probs=82.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|++++..++..|+.++|++|+|+|++++.++... ..++..+.+.  ..+.|+++|+||.|+...           
T Consensus        66 ~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~-----------  133 (184)
T smart00178       66 FDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAES-KRELDALLSDEELATVPFLILGNKIDAPYA-----------  133 (184)
T ss_pred             EECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccCC-----------
Confidence            89999999999999999999999999999999999887 6666555432  257999999999998643           


Q ss_pred             ccCHHHHHHHHHH-----------cCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQ-----------IGASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        79 ~v~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                       +..+++.....-           .+...++++||+++.|++++++.|...
T Consensus       134 -~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      134 -ASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             -CCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence             133444333211           122358999999999999999999765

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.71  E-value=1.7e-17  Score=111.33  Aligned_cols=97  Identities=28%  Similarity=0.281  Sum_probs=76.1

Q ss_pred             CCCCCc-----ccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCC
Q 031970            1 MNVIGQ-----EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP   75 (150)
Q Consensus         1 wDt~G~-----e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~   75 (150)
                      |||||+     +.|..+.+ ++++||++|+|||++++.++..  ..|....     ..|+++|+||+|+.+..       
T Consensus        40 iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~--~~~~~~~-----~~p~ilv~NK~Dl~~~~-------  104 (142)
T TIGR02528        40 IDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP--PGFASIF-----VKPVIGLVTKIDLAEAD-------  104 (142)
T ss_pred             ecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC--hhHHHhc-----cCCeEEEEEeeccCCcc-------
Confidence            899998     34555554 5899999999999999999865  3554432     24999999999986532       


Q ss_pred             CCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHH
Q 031970           76 GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI  116 (150)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  116 (150)
                          +..+....+++..+..+++++||+++.|++++|+.++
T Consensus       105 ----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528       105 ----VDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             ----cCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence                1556667777777765899999999999999998874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.70  E-value=3.5e-17  Score=112.42  Aligned_cols=112  Identities=23%  Similarity=0.410  Sum_probs=98.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--C---CCCEEEEeeCCCcccccccccCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--P---GVPVVLVGTKLDLREDKHYLADHP   75 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~---~~piilv~nK~D~~~~~~~~~~~~   75 (150)
                      ||++|||+|..+.+.||++|++.++|||+++.-+|+.. ..|..++....  +   .+|+++.+||||....-..     
T Consensus        80 wdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~-----  153 (229)
T KOG4423|consen   80 WDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN-----  153 (229)
T ss_pred             hcchhhhhhcceEEEEecCCcceEEEEEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccChHhhh-----
Confidence            99999999999999999999999999999999999999 89999988665  2   4788999999997654221     


Q ss_pred             CCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           76 GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                          -....+.++++..++..++++|+|.+.++.++-..+++.++-+
T Consensus       154 ----~~~~~~d~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvn  196 (229)
T KOG4423|consen  154 ----EATRQFDNFKKENGFEGWTETSAKENKNIPEAQRELVEKILVN  196 (229)
T ss_pred             ----hhHHHHHHHHhccCccceeeeccccccChhHHHHHHHHHHHhh
Confidence                1357788899999999999999999999999999999988744

>PLN00023 GTP-binding protein; Provisional

Probab=99.70  E-value=5.9e-17  Score=121.59  Aligned_cols=91  Identities=21%  Similarity=0.345  Sum_probs=74.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-------------CCCCEEEEeeCCCcccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-------------PGVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-------------~~~piilv~nK~D~~~~   67 (150)
                      |||+|+++|..+++.|+++++++|+|||++++.+|+.+ ..|+..+....             .++|++|||||+|+...
T Consensus        88 WDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~  166 (334)
T PLN00023         88 WDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK  166 (334)
T ss_pred             EECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence            99999999999999999999999999999999999998 89999998753             25899999999999653


Q ss_pred             cccccCCCCCCccCHHHHHHHHHHcCCcE
Q 031970           68 KHYLADHPGLVPVTTAQGEELRKQIGASY   96 (150)
Q Consensus        68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   96 (150)
                      ...    -....+..+++.++++..++.+
T Consensus       167 ~~~----r~~s~~~~e~a~~~A~~~g~l~  191 (334)
T PLN00023        167 EGT----RGSSGNLVDAARQWVEKQGLLP  191 (334)
T ss_pred             ccc----cccccccHHHHHHHHHHcCCCc
Confidence            210    0000136789999999988644

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.69  E-value=1.9e-16  Score=108.82  Aligned_cols=106  Identities=19%  Similarity=0.194  Sum_probs=75.5

Q ss_pred             CCCCCccccccccc---------ccccCCcEEEEEEeCCChhhH--HHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccc
Q 031970            1 MNVIGQEDYNRLRP---------LSYRGADVFVLAFSLVSRASY--ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH   69 (150)
Q Consensus         1 wDt~G~e~~~~l~~---------~~~~~ad~~i~v~d~~~~~s~--~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~   69 (150)
                      |||||+.+.....+         .....+|++|+|+|+++..++  +.. ..|+..+....++.|+++|+||.|+.....
T Consensus        52 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~  130 (168)
T cd01897          52 IDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFED  130 (168)
T ss_pred             EECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchhh
Confidence            89999854211111         011236899999999987653  554 578888876556899999999999875432


Q ss_pred             cccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           70 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        70 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                                  ......+....+. +++++||+++.|++++|+.+.+.++
T Consensus       131 ------------~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~  168 (168)
T cd01897         131 ------------LSEIEEEEELEGE-EVLKISTLTEEGVDEVKNKACELLL  168 (168)
T ss_pred             ------------HHHHHHhhhhccC-ceEEEEecccCCHHHHHHHHHHHhC
Confidence                        1124445554454 8999999999999999999988763

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.69  E-value=3.6e-16  Score=108.97  Aligned_cols=105  Identities=19%  Similarity=0.287  Sum_probs=83.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh-C-CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~-~-~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      ||.+|++.++.+|+.|++++|++|+|+|++++..+... ...+..+... . .++|+++++||.|+.+..          
T Consensus        63 ~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~-~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~----------  131 (175)
T PF00025_consen   63 WDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEA-KEELKELLNDPELKDIPILILANKQDLPDAM----------  131 (175)
T ss_dssp             EEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHH-HHHHHHHHTSGGGTTSEEEEEEESTTSTTSS----------
T ss_pred             EeccccccccccceeeccccceeEEEEecccceeeccc-ccchhhhcchhhcccceEEEEeccccccCcc----------
Confidence            89999999999999999999999999999999988887 4444454432 2 479999999999987642          


Q ss_pred             ccCHHHHHHHHH------HcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           79 PVTTAQGEELRK------QIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        79 ~v~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                        ...++.....      ...+ .++.+||.+|.|+.+.+++|.+++
T Consensus       132 --~~~~i~~~l~l~~l~~~~~~-~v~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  132 --SEEEIKEYLGLEKLKNKRPW-SVFSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             --THHHHHHHTTGGGTTSSSCE-EEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             --hhhHHHhhhhhhhcccCCce-EEEeeeccCCcCHHHHHHHHHhcC
Confidence              3344443332      2233 688999999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd01898 Obg Obg subfamily

Probab=99.68  E-value=2.5e-16  Score=108.39  Aligned_cols=105  Identities=19%  Similarity=0.231  Sum_probs=79.8

Q ss_pred             CCCCCcc----ccccccccccc---CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccccc
Q 031970            1 MNVIGQE----DYNRLRPLSYR---GADVFVLAFSLVSR-ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKH   69 (150)
Q Consensus         1 wDt~G~e----~~~~l~~~~~~---~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~~~   69 (150)
                      |||||+.    .+..+...+++   .+|++++|+|++++ .+++.+ ..|.+.+....   .+.|+++|+||+|+.....
T Consensus        53 ~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~  131 (170)
T cd01898          53 ADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEEE  131 (170)
T ss_pred             EecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCchh
Confidence            8999974    22234444444   59999999999999 788887 88888887654   3689999999999865432


Q ss_pred             cccCCCCCCccCHHHHHHHHHHc-CCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           70 YLADHPGLVPVTTAQGEELRKQI-GASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        70 ~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                                 ..+....+.... +. +++++||+++.|+.++|+.+.+.
T Consensus       132 -----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         132 -----------LFELLKELLKELWGK-PVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             -----------hHHHHHHHHhhCCCC-CEEEEecCCCCCHHHHHHHHHhh
Confidence                       334444555553 54 89999999999999999998865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=4.5e-17  Score=112.12  Aligned_cols=109  Identities=27%  Similarity=0.444  Sum_probs=96.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||+|||.|..+..-||-.+.++|++||++...++.++ .+|.+.+.+.+.++||++.|||.|..+..            
T Consensus        64 wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~-~rwhrd~~rv~~NiPiv~cGNKvDi~~r~------------  130 (216)
T KOG0096|consen   64 WDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNV-PRWHRDLVRVRENIPIVLCGNKVDIKARK------------  130 (216)
T ss_pred             eecccceeecccccccEEecceeEEEeeeeehhhhhcc-hHHHHHHHHHhcCCCeeeeccceeccccc------------
Confidence            99999999999999999999999999999999999998 99999999999999999999999976543            


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      .......+.+..++ .++++||+++.|.+..|-.+++.+...+
T Consensus       131 ~k~k~v~~~rkknl-~y~~iSaksn~NfekPFl~LarKl~G~p  172 (216)
T KOG0096|consen  131 VKAKPVSFHRKKNL-QYYEISAKSNYNFERPFLWLARKLTGDP  172 (216)
T ss_pred             cccccceeeecccc-eeEEeecccccccccchHHHhhhhcCCC
Confidence            22333455566676 9999999999999999999999997654

>cd04171 SelB SelB subfamily

Probab=99.67  E-value=2.2e-16  Score=107.78  Aligned_cols=102  Identities=18%  Similarity=0.151  Sum_probs=72.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      |||||+++|......+++++|++++|+|+++   +.+.+.+     ..+... ...|+++|+||+|+.+....       
T Consensus        56 ~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~-----~~~~~~-~~~~~ilv~NK~Dl~~~~~~-------  122 (164)
T cd04171          56 IDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHL-----EILELL-GIKRGLVVLTKADLVDEDWL-------  122 (164)
T ss_pred             EECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHH-----HHHHHh-CCCcEEEEEECccccCHHHH-------
Confidence            8999999998766778999999999999987   4444432     122221 22499999999998754210       


Q ss_pred             CccCHHHHHHHHHH---cCCcEEEEeccCCCCCHHHHHHHHHH
Q 031970           78 VPVTTAQGEELRKQ---IGASYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        78 ~~v~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                       .....+.....+.   .+. +++++||+++.|++++++.+.+
T Consensus       123 -~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         123 -ELVEEEIRELLAGTFLADA-PIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             -HHHHHHHHHHHHhcCcCCC-cEEEEeCCCCcCHHHHHHHHhh
Confidence             0122344444444   344 8999999999999999998764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.67  E-value=3.6e-16  Score=105.71  Aligned_cols=103  Identities=22%  Similarity=0.298  Sum_probs=79.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|..++..+++++|++++|+|++++.++... ..|+..+....  .+.|+++|+||.|+.+...         
T Consensus        49 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~---------  118 (159)
T cd04159          49 WDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAA-KNELHDLLEKPSLEGIPLLVLGNKNDLPGALS---------  118 (159)
T ss_pred             EECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccCCcC---------
Confidence            89999999999999999999999999999999998877 55555544322  4789999999999865421         


Q ss_pred             ccCHHHHHHHH-----HHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031970           79 PVTTAQGEELR-----KQIGASYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        79 ~v~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                         ..+.....     ...+. +++++||+++.|+.++++.+++
T Consensus       119 ---~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         119 ---VDELIEQMNLKSITDREV-SCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             ---HHHHHHHhCcccccCCce-EEEEEEeccCCChHHHHHHHhh
Confidence               12111111     11223 7899999999999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.65  E-value=1.1e-15  Score=109.44  Aligned_cols=122  Identities=27%  Similarity=0.466  Sum_probs=91.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccC--CCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLAD--HPGL   77 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~--~~~~   77 (150)
                      |||+||++|..+++.|+.+++++++|||.++..++.+....|...+....+ +.|+++|+||+|+.........  ....
T Consensus        59 ~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~  138 (219)
T COG1100          59 WDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLN  138 (219)
T ss_pred             ecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhh
Confidence            999999999999999999999999999999966666666999999998874 7999999999999876421000  0000


Q ss_pred             CccCHHHHHHHHHH---cCCcEEEEeccC--CCCCHHHHHHHHHHHHhCCC
Q 031970           78 VPVTTAQGEELRKQ---IGASYYIECSSK--TQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        78 ~~v~~~~~~~~~~~---~~~~~~~~~Sa~--~~~~i~~~~~~l~~~~~~~~  123 (150)
                      ..+...........   ... .++++|++  .+.++.++|..+++.+....
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~  188 (219)
T COG1100         139 REVVLLVLAPKAVLPEVANP-ALLETSAKSLTGPNVNELFKELLRKLLEEI  188 (219)
T ss_pred             cCcchhhhHhHHhhhhhccc-ceeEeecccCCCcCHHHHHHHHHHHHHHhh
Confidence            01122222222222   233 48999999  99999999999999987543

>cd04155 Arl3 Arl3 subfamily

Probab=99.64  E-value=8.1e-16  Score=106.25  Aligned_cols=101  Identities=18%  Similarity=0.269  Sum_probs=78.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|++.+...+..+++++|++++|+|+++..++... ..|+..+.+..  .++|+++++||+|+....          
T Consensus        63 ~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------  131 (173)
T cd04155          63 WDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEA-GAELVELLEEEKLAGVPVLVFANKQDLATAA----------  131 (173)
T ss_pred             EECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECCCCccCC----------
Confidence            89999999998888999999999999999999998887 55554444322  469999999999986432          


Q ss_pred             ccCHHHHHHHHHHcCC-------cEEEEeccCCCCCHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQIGA-------SYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~-------~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                        ...+   +.+..++       .+++++||++|.|++++|+.|++
T Consensus       132 --~~~~---i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         132 --PAEE---IAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             --CHHH---HHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence              1222   2222232       14789999999999999999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.64  E-value=1.6e-15  Score=101.63  Aligned_cols=116  Identities=22%  Similarity=0.401  Sum_probs=98.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      ||..||++|..+.+...+++.+++++||.+.+.++..+ .+|++..+......-.|+||+|.|+.-.-++     +-++-
T Consensus        74 wdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi-~~WY~QAr~~NktAiPilvGTKyD~fi~lp~-----e~Q~~  147 (205)
T KOG1673|consen   74 WDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSI-KEWYRQARGLNKTAIPILVGTKYDLFIDLPP-----ELQET  147 (205)
T ss_pred             EecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHH-HHHHHHHhccCCccceEEeccchHhhhcCCH-----HHHHH
Confidence            99999999999999999999999999999999999998 8999999887766666889999997543221     11123


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      ...++..+++.++. +.+++|+..+.||.++|.-+...++.-+
T Consensus       148 I~~qar~YAk~mnA-sL~F~Sts~sINv~KIFK~vlAklFnL~  189 (205)
T KOG1673|consen  148 ISRQARKYAKVMNA-SLFFCSTSHSINVQKIFKIVLAKLFNLP  189 (205)
T ss_pred             HHHHHHHHHHHhCC-cEEEeeccccccHHHHHHHHHHHHhCCc
Confidence            55678899999997 9999999999999999999998887654

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=1.4e-15  Score=104.39  Aligned_cols=108  Identities=14%  Similarity=0.107  Sum_probs=86.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      ||..||++++.+|++|+++.+++|||.|.+|++.+..+.+++...+.... .++|+++.+||.|+...-+          
T Consensus        66 WDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als----------  135 (181)
T KOG0070|consen   66 WDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS----------  135 (181)
T ss_pred             EecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC----------
Confidence            99999999999999999999999999999999999988555555555443 4899999999999886532          


Q ss_pred             cCHHHHHHHH-----HHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELR-----KQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                        ..++....     ....+ .+..++|.+|+|+.+.++.+...+..
T Consensus       136 --~~ei~~~L~l~~l~~~~w-~iq~~~a~~G~GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  136 --AAEITNKLGLHSLRSRNW-HIQSTCAISGEGLYEGLDWLSNNLKK  179 (181)
T ss_pred             --HHHHHhHhhhhccCCCCc-EEeeccccccccHHHHHHHHHHHHhc
Confidence              23332222     22344 57889999999999999999988754

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.62  E-value=1.4e-15  Score=123.18  Aligned_cols=107  Identities=19%  Similarity=0.238  Sum_probs=84.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|...+..+++.||++|+|+|+++..+.+.. ..|...+.   .+.|+++|+||+|+....            
T Consensus        75 iDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~---~~ipiIiViNKiDl~~~~------------  138 (595)
T TIGR01393        75 IDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE---NDLEIIPVINKIDLPSAD------------  138 (595)
T ss_pred             EECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCCccC------------
Confidence            89999999999999999999999999999998777765 55654443   368999999999986431            


Q ss_pred             CHHHHHHHHHHcCCc--EEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           81 TTAQGEELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      ......++.+.+++.  .++++||++|.|+.++|+.+++.+..+.
T Consensus       139 ~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~  183 (595)
T TIGR01393       139 PERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPK  183 (595)
T ss_pred             HHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence            222334455555542  4899999999999999999999886653

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.62  E-value=2.1e-15  Score=114.74  Aligned_cols=109  Identities=17%  Similarity=0.217  Sum_probs=83.3

Q ss_pred             CCCCCccc----ccccccc---cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCccccccc
Q 031970            1 MNVIGQED----YNRLRPL---SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP---GVPVVLVGTKLDLREDKHY   70 (150)
Q Consensus         1 wDt~G~e~----~~~l~~~---~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~D~~~~~~~   70 (150)
                      |||||.-+    ...+...   ++..++++|+|+|+++..+++++ ..|..++..+.+   ++|+++|+||+|+..... 
T Consensus       211 ~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~-  288 (335)
T PRK12299        211 ADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEEE-  288 (335)
T ss_pred             EeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCchh-
Confidence            89999743    1223333   45579999999999998888887 899988887653   689999999999875432 


Q ss_pred             ccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           71 LADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                               +.......+++..+. +++++||+++.|++++++.+.+.+.+
T Consensus       289 ---------~~~~~~~~~~~~~~~-~i~~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        289 ---------EREKRAALELAALGG-PVFLISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             ---------HHHHHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence                     133344455555665 89999999999999999999988764

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.62  E-value=2e-15  Score=103.55  Aligned_cols=101  Identities=16%  Similarity=0.173  Sum_probs=76.2

Q ss_pred             CCCCCcc-----cccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCC
Q 031970            1 MNVIGQE-----DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP   75 (150)
Q Consensus         1 wDt~G~e-----~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~   75 (150)
                      |||||+.     .+..+. .++++||++++|+|+++..++.   ..|+..+   ..+.|+++++||+|+.+.        
T Consensus        42 iDtpG~~~~~~~~~~~~~-~~~~~ad~il~v~d~~~~~s~~---~~~~~~~---~~~~~ii~v~nK~Dl~~~--------  106 (158)
T PRK15467         42 IDTPGEYFSHPRWYHALI-TTLQDVDMLIYVHGANDPESRL---PAGLLDI---GVSKRQIAVISKTDMPDA--------  106 (158)
T ss_pred             ccCCccccCCHHHHHHHH-HHHhcCCEEEEEEeCCCccccc---CHHHHhc---cCCCCeEEEEEccccCcc--------
Confidence            8999973     222222 3478999999999999987763   3454443   236899999999998542        


Q ss_pred             CCCccCHHHHHHHHHHcCC-cEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           76 GLVPVTTAQGEELRKQIGA-SYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                           .......++...+. .|++++||+++.|++++|+.+.+.+..
T Consensus       107 -----~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~  148 (158)
T PRK15467        107 -----DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQ  148 (158)
T ss_pred             -----cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchh
Confidence                 34556677777764 489999999999999999999887754

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.61  E-value=4.8e-15  Score=100.63  Aligned_cols=101  Identities=15%  Similarity=0.170  Sum_probs=76.1

Q ss_pred             CCCCCccccccc------cccccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQEDYNRL------RPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~~~~l------~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||++++...      +..++.  ++|++|+|+|++++....    .|...+..  .++|+++|+||+|+.....   
T Consensus        48 iDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~----~~~~~~~~--~~~~~iiv~NK~Dl~~~~~---  118 (158)
T cd01879          48 VDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL----YLTLQLLE--LGLPVVVALNMIDEAEKRG---  118 (158)
T ss_pred             EECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH----HHHHHHHH--cCCCEEEEEehhhhccccc---
Confidence            899999988753      455664  999999999999865433    33334433  2689999999999875432   


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                              .......+.+.++. +++++||.++.|+.++++.+...+
T Consensus       119 --------~~~~~~~~~~~~~~-~~~~iSa~~~~~~~~l~~~l~~~~  156 (158)
T cd01879         119 --------IKIDLDKLSELLGV-PVVPTSARKGEGIDELKDAIAELA  156 (158)
T ss_pred             --------chhhHHHHHHhhCC-CeEEEEccCCCCHHHHHHHHHHHh
Confidence                    22334566677776 899999999999999999998763

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.60  E-value=2.7e-15  Score=105.96  Aligned_cols=94  Identities=12%  Similarity=0.066  Sum_probs=67.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|..++..+++++|++++|||+++... ... ..|+..+..  .++|+++|+||+|+......         .
T Consensus        70 ~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~-~~~-~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~---------~  136 (194)
T cd01891          70 VDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-PQT-RFVLKKALE--LGLKPIVVINKIDRPDARPE---------E  136 (194)
T ss_pred             EECCCcHHHHHHHHHHHHhcCEEEEEEECCCCcc-HHH-HHHHHHHHH--cCCCEEEEEECCCCCCCCHH---------H
Confidence            8999999999999999999999999999998432 222 344444433  37899999999998653211         1


Q ss_pred             CHHHHHHHHHH-------cCCcEEEEeccCCCCCH
Q 031970           81 TTAQGEELRKQ-------IGASYYIECSSKTQQNV  108 (150)
Q Consensus        81 ~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~i  108 (150)
                      ..+++..+.+.       .++ +++++||++|.|+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~-~iv~~Sa~~g~~~  170 (194)
T cd01891         137 VVDEVFDLFIELGATEEQLDF-PVLYASAKNGWAS  170 (194)
T ss_pred             HHHHHHHHHHHhCCccccCcc-CEEEeehhccccc
Confidence            23444454433       244 8999999999665

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.59  E-value=4.1e-15  Score=105.92  Aligned_cols=108  Identities=17%  Similarity=0.154  Sum_probs=76.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR----ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG   76 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~   76 (150)
                      |||||+++|.......+..+|++++|+|++++    .+.+.+ ..|    .. ....|+++|+||+|+......      
T Consensus        88 iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-~~~----~~-~~~~~iiivvNK~Dl~~~~~~------  155 (203)
T cd01888          88 VDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-AAL----EI-MGLKHIIIVQNKIDLVKEEQA------  155 (203)
T ss_pred             EECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-HHH----HH-cCCCcEEEEEEchhccCHHHH------
Confidence            89999999988777778889999999999974    233332 222    21 123579999999998753210      


Q ss_pred             CCccCHHHHHHHHHHc---CCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           77 LVPVTTAQGEELRKQI---GASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        77 ~~~v~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                        ....+.+..++..+   +. +++++||+++.|++++++.+.+.+.+++
T Consensus       156 --~~~~~~i~~~~~~~~~~~~-~i~~vSA~~g~gi~~L~~~l~~~l~~~~  202 (203)
T cd01888         156 --LENYEQIKKFVKGTIAENA-PIIPISAQLKYNIDVLLEYIVKKIPTPP  202 (203)
T ss_pred             --HHHHHHHHHHHhccccCCC-cEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence              00123344444433   33 7999999999999999999999887754

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.59  E-value=5.4e-15  Score=99.71  Aligned_cols=113  Identities=17%  Similarity=0.202  Sum_probs=89.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      ||+.||..++..|+.||..+|++|+|+|.+|+..+++....+-..+.... .+.|+++++||.|+...-..       .+
T Consensus        65 wDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~-------~~  137 (185)
T KOG0073|consen   65 WDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSL-------EE  137 (185)
T ss_pred             EEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCH-------HH
Confidence            99999999999999999999999999999999999988544444444222 46999999999998743211       00


Q ss_pred             c-CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 V-TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      + ..-....+++...+ +++-|||.+|+++.+-|+.++..+..
T Consensus       138 i~~~~~L~~l~ks~~~-~l~~cs~~tge~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  138 ISKALDLEELAKSHHW-RLVKCSAVTGEDLLEGIDWLCDDLMS  179 (185)
T ss_pred             HHHhhCHHHhccccCc-eEEEEeccccccHHHHHHHHHHHHHH
Confidence            1 11234456677888 99999999999999999999988875

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.59  E-value=1.2e-14  Score=106.24  Aligned_cols=97  Identities=23%  Similarity=0.283  Sum_probs=79.0

Q ss_pred             cccccccccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHH
Q 031970            6 QEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ   84 (150)
Q Consensus         6 ~e~~~~l~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~   84 (150)
                      .|+|+.+.+.+++++|++++|||++++. +++.+ +.|+..+..  .++|+++|+||+|+.+...          +..+.
T Consensus        23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~--~~i~~vIV~NK~DL~~~~~----------~~~~~   89 (245)
T TIGR00157        23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEA--QNIEPIIVLNKIDLLDDED----------MEKEQ   89 (245)
T ss_pred             ecccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEECcccCCCHH----------HHHHH
Confidence            3789999999999999999999999988 88887 899876654  5799999999999965432          12233


Q ss_pred             HHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031970           85 GEELRKQIGASYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                      ...+ +..+. +++++||+++.|++++|+.+..
T Consensus        90 ~~~~-~~~g~-~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        90 LDIY-RNIGY-QVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             HHHH-HHCCC-eEEEEecCCchhHHHHHhhhcC
Confidence            4444 45776 8999999999999999998864

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd01878 HflX HflX subfamily

Probab=99.57  E-value=1.1e-14  Score=103.37  Aligned_cols=101  Identities=17%  Similarity=0.209  Sum_probs=75.7

Q ss_pred             CCCCCccc---------ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCccccccc
Q 031970            1 MNVIGQED---------YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHY   70 (150)
Q Consensus         1 wDt~G~e~---------~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~   70 (150)
                      |||||..+         |.... ..+.++|++++|+|++++.++.+. ..|.+.+.... .+.|+++|+||+|+..... 
T Consensus        94 ~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~-  170 (204)
T cd01878          94 TDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDEE-  170 (204)
T ss_pred             eCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChHH-
Confidence            89999833         22211 136689999999999999988876 67777776654 4689999999999865432 


Q ss_pred             ccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           71 LADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                                . .   ......+. +++++||+++.|+.++++.|...+
T Consensus       171 ----------~-~---~~~~~~~~-~~~~~Sa~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         171 ----------L-E---ERLEAGRP-DAVFISAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             ----------H-H---HHhhcCCC-ceEEEEcCCCCCHHHHHHHHHhhC
Confidence                      1 1   33444454 899999999999999999987653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.56  E-value=2.3e-14  Score=98.23  Aligned_cols=107  Identities=17%  Similarity=0.226  Sum_probs=73.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||++.|..++..++..+|++++|+|+++....+..  ..+..+..  .++|+++|+||+|+......         -
T Consensus        55 iDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~--~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~---------~  121 (168)
T cd01887          55 IDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTI--EAIKLAKA--ANVPFIVALNKIDKPNANPE---------R  121 (168)
T ss_pred             EeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHH--HHHHHHHH--cCCCEEEEEEceecccccHH---------H
Confidence            89999999999998899999999999999985322221  12222332  36899999999998643210         0


Q ss_pred             CHHHHHHHHHH----cC-CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           81 TTAQGEELRKQ----IG-ASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        81 ~~~~~~~~~~~----~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      .......+...    .+ ..+++++||+++.|+.++++.+.+...
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         122 VKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             HHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence            11122222111    11 137999999999999999999987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.56  E-value=3.4e-14  Score=94.39  Aligned_cols=104  Identities=38%  Similarity=0.708  Sum_probs=80.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHH--HHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW--IPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~--~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+..+......+++.+|++++|+|++++.++... ..|  .........+.|+++|+||+|+......        
T Consensus        50 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~--------  120 (157)
T cd00882          50 WDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENV-KEWLLLILINKEGENIPIILVGNKIDLPEERVV--------  120 (157)
T ss_pred             EecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhhccCCCcEEEEEeccccccccch--------
Confidence            89999999988888899999999999999999999887 555  2222333358999999999998765431        


Q ss_pred             ccCHHH-HHHHHHHcCCcEEEEeccCCCCCHHHHHHHHH
Q 031970           79 PVTTAQ-GEELRKQIGASYYIECSSKTQQNVKAVFDAAI  116 (150)
Q Consensus        79 ~v~~~~-~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  116 (150)
                        .... ......... .+++++|+.++.|+.++++.+.
T Consensus       121 --~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         121 --SEEELAEQLAKELG-VPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             --HHHHHHHHHHhhcC-CcEEEEecCCCCChHHHHHHHh
Confidence              1111 223333444 4999999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.55  E-value=1.8e-14  Score=116.98  Aligned_cols=107  Identities=17%  Similarity=0.231  Sum_probs=82.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|...+..+++.+|++|+|+|+++....+.. ..|.....   .+.|+++|+||+|+....            
T Consensus        79 iDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~~---~~lpiIvViNKiDl~~a~------------  142 (600)
T PRK05433         79 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NDLEIIPVLNKIDLPAAD------------  142 (600)
T ss_pred             EECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEEECCCCCccc------------
Confidence            89999999999999999999999999999997666654 45544332   368999999999986432            


Q ss_pred             CHHHHHHHHHHcCCc--EEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           81 TTAQGEELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      ......++...+++.  .++++||++|.|+.++++.+.+.+..+.
T Consensus       143 ~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~  187 (600)
T PRK05433        143 PERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK  187 (600)
T ss_pred             HHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence            122233444445542  4899999999999999999999887653

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.55  E-value=3.3e-14  Score=99.10  Aligned_cols=108  Identities=15%  Similarity=0.164  Sum_probs=80.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+.++...+..+++.+|++++|+|++++.+...  ..++..+..  .+.|+++|+||+|+......        ..
T Consensus        67 iDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~--------~~  134 (189)
T cd00881          67 IDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT--REHLRIARE--GGLPIIVAINKIDRVGEEDL--------EE  134 (189)
T ss_pred             EeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH--HHHHHHHHH--CCCCeEEEEECCCCcchhcH--------HH
Confidence            7999999998888899999999999999998766554  344444444  47999999999998763211        01


Q ss_pred             CHHHHHHHHHHc-------------CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           81 TTAQGEELRKQI-------------GASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        81 ~~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      ..+.+....+..             ...+++++||+++.|+.+++..+.+.+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         135 VLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             HHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence            223333333332             2348999999999999999999998874

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.55  E-value=2.5e-14  Score=108.63  Aligned_cols=106  Identities=19%  Similarity=0.235  Sum_probs=80.3

Q ss_pred             CCCCCcccc----cccccccc---cCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccc
Q 031970            1 MNVIGQEDY----NRLRPLSY---RGADVFVLAFSLVSR---ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G~e~~----~~l~~~~~---~~ad~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~   67 (150)
                      |||||+.+-    ..+...++   ..++++++|+|+++.   .+++.+ ..|.+++..+.   .+.|+++|+||+|+...
T Consensus       210 ~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~  288 (329)
T TIGR02729       210 ADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDE  288 (329)
T ss_pred             EeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence            899998532    23444444   469999999999987   677776 77877776654   37899999999998654


Q ss_pred             cccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           68 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      ..           ..+....+++..+. +++++||+++.|++++++.+.+.+
T Consensus       289 ~~-----------~~~~~~~l~~~~~~-~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       289 EE-----------LAELLKELKKALGK-PVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             HH-----------HHHHHHHHHHHcCC-cEEEEEccCCcCHHHHHHHHHHHh
Confidence            22           33444556666675 899999999999999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.54  E-value=2.3e-14  Score=113.72  Aligned_cols=102  Identities=18%  Similarity=0.228  Sum_probs=75.3

Q ss_pred             CCCCCccc--------ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQED--------YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~--------~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||++.        +......++++||++|+|+|+++..++.+  ..|...+..  .++|+++|+||+|+....    
T Consensus        91 ~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~--~~i~~~l~~--~~~piilV~NK~Dl~~~~----  162 (472)
T PRK03003         91 VDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD--EAVARVLRR--SGKPVILAANKVDDERGE----  162 (472)
T ss_pred             EeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCCccc----
Confidence            89999873        33445668899999999999999877654  355555554  379999999999985421    


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                               ......+  ..++..++++||++|.|++++|+.++..+.+
T Consensus       163 ---------~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        163 ---------ADAAALW--SLGLGEPHPVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             ---------hhhHHHH--hcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence                     1122222  2343356799999999999999999998865

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.54  E-value=1.8e-14  Score=114.32  Aligned_cols=108  Identities=19%  Similarity=0.188  Sum_probs=76.8

Q ss_pred             CCCCCc----------cccccccc-ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccc
Q 031970            1 MNVIGQ----------EDYNRLRP-LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH   69 (150)
Q Consensus         1 wDt~G~----------e~~~~l~~-~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~   69 (150)
                      |||||+          +.|..+.. .++++||++|+|+|++++.++++.  .++..+..  .++|+|+|+||+|+.....
T Consensus       264 ~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~--~~~piIiV~NK~Dl~~~~~  339 (472)
T PRK03003        264 VDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIE--AGRALVLAFNKWDLVDEDR  339 (472)
T ss_pred             EECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChhH
Confidence            899995          44544432 467899999999999999999886  45555543  4799999999999975321


Q ss_pred             cccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           70 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        70 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      .        .....+...........+++++||++|.||+++|+.+.+.+.
T Consensus       340 ~--------~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~  382 (472)
T PRK03003        340 R--------YYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALE  382 (472)
T ss_pred             H--------HHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            0        001122222222223348999999999999999999988774

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.53  E-value=4e-14  Score=95.08  Aligned_cols=103  Identities=31%  Similarity=0.506  Sum_probs=82.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|++++..++..+++.+++++.++|.... .++.+....|...+..... +.|+++++||.|+....          
T Consensus        55 ~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------  124 (161)
T TIGR00231        55 LDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK----------  124 (161)
T ss_pred             EECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch----------
Confidence            89999999999999999999999999999988 7777763467776766555 89999999999986542          


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHH
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA  115 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  115 (150)
                        ............+..+++++||+++.|+.++|+.|
T Consensus       125 --~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231       125 --LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             --hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence              22333344444444589999999999999999876

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01894 EngA1 EngA1 subfamily

Probab=99.53  E-value=4.9e-14  Score=95.35  Aligned_cols=100  Identities=18%  Similarity=0.205  Sum_probs=72.8

Q ss_pred             CCCCCcccccc--------cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQEDYNR--------LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~~~~--------l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||++.+..        ....+++++|++++|+|..+..+....  .+...+.+.  +.|+++|+||+|+.+...   
T Consensus        50 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~---  122 (157)
T cd01894          50 IDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEED---  122 (157)
T ss_pred             EECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHH---
Confidence            89999988654        234567899999999999886655442  333334332  589999999999875321   


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                              .    .......+..+++++||+++.|++++|+.+++.+
T Consensus       123 --------~----~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~  157 (157)
T cd01894         123 --------E----AAEFYSLGFGEPIPISAEHGRGIGDLLDAILELL  157 (157)
T ss_pred             --------H----HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence                    1    2223345555789999999999999999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.53  E-value=1.2e-14  Score=96.60  Aligned_cols=104  Identities=20%  Similarity=0.298  Sum_probs=82.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      ||.+||.+|+++|+.|+++++++++|.|+.++........++...+.+.. .++|++++|||.|++..-           
T Consensus        70 wD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL-----------  138 (186)
T KOG0075|consen   70 WDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL-----------  138 (186)
T ss_pred             EecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc-----------
Confidence            99999999999999999999999999999999888877555555555544 479999999999987642           


Q ss_pred             cCHHHHHHHHHHcCC-------cEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           80 VTTAQGEELRKQIGA-------SYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        80 v~~~~~~~~~~~~~~-------~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                       ....   +...+|+       .-+|.+|+++..|++-+.+.|+++-
T Consensus       139 -~~~~---li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hs  181 (186)
T KOG0075|consen  139 -SKIA---LIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHS  181 (186)
T ss_pred             -cHHH---HHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHh
Confidence             2222   1222232       2578999999999999999998754

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.53  E-value=4e-14  Score=97.66  Aligned_cols=106  Identities=22%  Similarity=0.275  Sum_probs=75.2

Q ss_pred             CCCCCccc----cccccc---ccccCCcEEEEEEeCCCh------hhHHHHHHHHHHHHhhhC--------CCCCEEEEe
Q 031970            1 MNVIGQED----YNRLRP---LSYRGADVFVLAFSLVSR------ASYENVLKKWIPELQHYS--------PGVPVVLVG   59 (150)
Q Consensus         1 wDt~G~e~----~~~l~~---~~~~~ad~~i~v~d~~~~------~s~~~~~~~~~~~i~~~~--------~~~piilv~   59 (150)
                      |||||+.+    ...+..   .+++++|++++|+|++++      .++.+. ..|...+....        .+.|+++|+
T Consensus        49 ~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~  127 (176)
T cd01881          49 ADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVL  127 (176)
T ss_pred             EeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEE
Confidence            89999743    222322   357789999999999998      577776 67776666443        369999999


Q ss_pred             eCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           60 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        60 nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                      ||+|+......          ............+. +++++||+++.|++++++.+.+.
T Consensus       128 NK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         128 NKIDLDDAEEL----------EEELVRELALEEGA-EVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             EchhcCchhHH----------HHHHHHHHhcCCCC-CEEEEehhhhcCHHHHHHHHHhh
Confidence            99998754321          11112233333443 79999999999999999998765

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR00436 era GTP-binding protein Era

Probab=99.52  E-value=5.6e-14  Score=104.17  Aligned_cols=107  Identities=16%  Similarity=0.099  Sum_probs=78.3

Q ss_pred             CCCCCccccc-cc-------ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQEDYN-RL-------RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~~~-~l-------~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||..+.. .+       ...+++++|++++|+|+++..+.+   ..++..+..  .+.|+++|+||+|+.....   
T Consensus        53 vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~---~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~---  124 (270)
T TIGR00436        53 IDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG---EFVLTKLQN--LKRPVVLTRNKLDNKFKDK---  124 (270)
T ss_pred             EECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH---HHHHHHHHh--cCCCEEEEEECeeCCCHHH---
Confidence            7999976431 11       234678999999999999877664   234444443  3689999999999864321   


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                              .......++...+..+++++||++|.|++++++.+...+.+.+
T Consensus       125 --------~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~  167 (270)
T TIGR00436       125 --------LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGP  167 (270)
T ss_pred             --------HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCC
Confidence                    3344555655556558999999999999999999999886543

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=2.5e-14  Score=94.36  Aligned_cols=107  Identities=12%  Similarity=0.139  Sum_probs=89.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      ||..||++.+.+|++||.+..++|||.|..+....+++..++.+.|.... .+.|+++.+||-|++...           
T Consensus        66 wdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~-----------  134 (180)
T KOG0071|consen   66 WDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM-----------  134 (180)
T ss_pred             eeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc-----------
Confidence            99999999999999999999999999999999999988777777666443 479999999999998764           


Q ss_pred             cCHHHHHHHHH-----HcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           80 VTTAQGEELRK-----QIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        80 v~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                       .++++..+..     ..++ -+.++||.++.|+.+-|.++...+-
T Consensus       135 -~pqei~d~leLe~~r~~~W-~vqp~~a~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  135 -KPQEIQDKLELERIRDRNW-YVQPSCALSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             -CHHHHHHHhccccccCCcc-EeeccccccchhHHHHHHHHHhhcc
Confidence             4465555443     3344 5789999999999999999987654

>PRK04213 GTP-binding protein; Provisional

Probab=99.51  E-value=1.4e-14  Score=102.68  Aligned_cols=105  Identities=16%  Similarity=0.139  Sum_probs=70.5

Q ss_pred             CCCCC-----------ccccccccccccc----CCcEEEEEEeCCChhhHHH---------HHHHHHHHHhhhCCCCCEE
Q 031970            1 MNVIG-----------QEDYNRLRPLSYR----GADVFVLAFSLVSRASYEN---------VLKKWIPELQHYSPGVPVV   56 (150)
Q Consensus         1 wDt~G-----------~e~~~~l~~~~~~----~ad~~i~v~d~~~~~s~~~---------~~~~~~~~i~~~~~~~pii   56 (150)
                      |||||           +++|..++..|+.    .++++++|+|.++......         .-..+...+..  .++|++
T Consensus        57 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~i  134 (201)
T PRK04213         57 TDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPI  134 (201)
T ss_pred             EeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeE
Confidence            89999           7888887777765    3568888888765322210         00112222222  379999


Q ss_pred             EEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCC--------cEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           57 LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA--------SYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        57 lv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +|+||+|+....             .+....+++..+.        .+++++||++| |++++++.|++.+.+
T Consensus       135 iv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        135 VAVNKMDKIKNR-------------DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             EEEECccccCcH-------------HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            999999986431             2344555555553        14799999999 999999999988653

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.50  E-value=1.2e-13  Score=111.85  Aligned_cols=101  Identities=15%  Similarity=0.290  Sum_probs=72.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      ||||||+.|..++..++..+|++|+|+|+++....+.. +.+ .....  .++|+++++||+|+.+.             
T Consensus       140 iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~-e~i-~~~~~--~~vPiIVviNKiDl~~~-------------  202 (587)
T TIGR00487       140 LDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTI-EAI-SHAKA--ANVPIIVAINKIDKPEA-------------  202 (587)
T ss_pred             EECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHH-HHH-HHHHH--cCCCEEEEEECcccccC-------------
Confidence            89999999999999999999999999999874322221 222 12221  36899999999998642             


Q ss_pred             CHHHHHHHHHH-------cCC-cEEEEeccCCCCCHHHHHHHHHHH
Q 031970           81 TTAQGEELRKQ-------IGA-SYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        81 ~~~~~~~~~~~-------~~~-~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                      ..+.....++.       ++. .+++++||++|.|+.++++.+...
T Consensus       203 ~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~~  248 (587)
T TIGR00487       203 NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILLQ  248 (587)
T ss_pred             CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhhh
Confidence            12222222222       221 379999999999999999998753

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK15494 era GTPase Era; Provisional

Probab=99.50  E-value=1.1e-13  Score=105.56  Aligned_cols=105  Identities=11%  Similarity=0.182  Sum_probs=74.5

Q ss_pred             CCCCCcc-ccccccc-------ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQE-DYNRLRP-------LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e-~~~~l~~-------~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||+. .+..+.+       .++++||++++|+|..+.  +......|+..+...  +.|+++|+||+|+...     
T Consensus       105 ~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~-----  175 (339)
T PRK15494        105 YDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKS--FDDITHNILDKLRSL--NIVPIFLLNKIDIESK-----  175 (339)
T ss_pred             EECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-----
Confidence            8999985 3444332       247799999999998763  333323566655543  5688899999998542     


Q ss_pred             CCCCCCccCHHHHHHHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           73 DHPGLVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                              ...++..++...+ ...++++||++|.|++++|+.+...+.+.
T Consensus       176 --------~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~  218 (339)
T PRK15494        176 --------YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKIS  218 (339)
T ss_pred             --------cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCC
Confidence                    2244555555443 24799999999999999999999988654

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.49  E-value=1.7e-13  Score=107.51  Aligned_cols=109  Identities=17%  Similarity=0.155  Sum_probs=75.4

Q ss_pred             CCCCCcccccccc-----------cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccc
Q 031970            1 MNVIGQEDYNRLR-----------PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH   69 (150)
Q Consensus         1 wDt~G~e~~~~l~-----------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~   69 (150)
                      |||||+.++..+.           ..+++.||++|+|+|++++.+.++.  .+...+.+  .+.|+++|+||+|+.....
T Consensus       225 iDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~~~~~  300 (429)
T TIGR03594       225 IDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL--RIAGLILE--AGKALVIVVNKWDLVKDEK  300 (429)
T ss_pred             EECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHH--cCCcEEEEEECcccCCCHH
Confidence            8999987665443           2368899999999999998888775  45555444  3689999999999972111


Q ss_pred             cccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           70 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        70 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      .       .......+.......+..+++++||++|.|+.++|+.+.+.+.
T Consensus       301 ~-------~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~  344 (429)
T TIGR03594       301 T-------REEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYE  344 (429)
T ss_pred             H-------HHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            0       0001112222222223358999999999999999999887654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01889 SelB_euk SelB subfamily

Probab=99.48  E-value=1.6e-13  Score=96.72  Aligned_cols=109  Identities=11%  Similarity=0.085  Sum_probs=71.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+..+....-...+.+|++++|+|+++..+.+.. +.+.  +... .+.|+++|+||+|+......        ..
T Consensus        73 ~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~--~~~~-~~~~~iiv~NK~Dl~~~~~~--------~~  140 (192)
T cd01889          73 VDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV--IGEI-LCKKLIVVLNKIDLIPEEER--------ER  140 (192)
T ss_pred             EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH--HHHH-cCCCEEEEEECcccCCHHHH--------HH
Confidence            89999976543222345678999999999986544432 2232  1121 25799999999998743210        01


Q ss_pred             CHHHHHHHHH-H------cCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           81 TTAQGEELRK-Q------IGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        81 ~~~~~~~~~~-~------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ..+++..... .      .+. +++++||+++.|++++++.+..++..|
T Consensus       141 ~~~~~~~~l~~~~~~~~~~~~-~vi~iSa~~g~gi~~L~~~l~~~~~~~  188 (192)
T cd01889         141 KIEKMKKKLQKTLEKTRFKNS-PIIPVSAKPGGGEAELGKDLNNLIVLP  188 (192)
T ss_pred             HHHHHHHHHHHHHHhcCcCCC-CEEEEeccCCCCHHHHHHHHHhccccc
Confidence            1222322211 1      233 899999999999999999999998765

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.47  E-value=2.3e-13  Score=95.73  Aligned_cols=107  Identities=21%  Similarity=0.311  Sum_probs=78.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      .||||+.+|.......++.+|++|+|+|+.+....+.  .+.+..+...  ++|+++|.||+|+......         .
T Consensus        75 iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~--~~~l~~~~~~--~~p~ivvlNK~D~~~~~~~---------~  141 (188)
T PF00009_consen   75 IDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQT--EEHLKILREL--GIPIIVVLNKMDLIEKELE---------E  141 (188)
T ss_dssp             EEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHH--HHHHHHHHHT--T-SEEEEEETCTSSHHHHH---------H
T ss_pred             cccccccceeecccceecccccceeeeeccccccccc--cccccccccc--ccceEEeeeeccchhhhHH---------H
Confidence            4999999999888888999999999999998765544  3444445443  6899999999999843211         0


Q ss_pred             CHHHHH-HHHHHcC-----CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           81 TTAQGE-ELRKQIG-----ASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        81 ~~~~~~-~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      ..++.. .+.+.++     ..+++++||.+|.|+.++++.+.+.+.
T Consensus       142 ~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  142 IIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             HHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            122222 4444443     247999999999999999999998764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.47  E-value=1.8e-13  Score=104.78  Aligned_cols=99  Identities=18%  Similarity=0.217  Sum_probs=72.1

Q ss_pred             CCCCCc---------ccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCccccccc
Q 031970            1 MNVIGQ---------EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHY   70 (150)
Q Consensus         1 wDt~G~---------e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~   70 (150)
                      |||+|.         +.|.... ..+.+||++++|+|++++.++++. ..|...+.... .+.|+++|+||+|+..... 
T Consensus       242 ~DT~G~~~~l~~~lie~f~~tl-e~~~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-  318 (351)
T TIGR03156       242 TDTVGFIRDLPHELVAAFRATL-EEVREADLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-  318 (351)
T ss_pred             EecCcccccCCHHHHHHHHHHH-HHHHhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCChHh-
Confidence            899997         2333322 247899999999999999888776 66666665543 4789999999999864211 


Q ss_pred             ccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           71 LADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                                    ...... .. .+++++||+++.|++++++.+.+.
T Consensus       319 --------------v~~~~~-~~-~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       319 --------------IERLEE-GY-PEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             --------------HHHHHh-CC-CCEEEEEccCCCCHHHHHHHHHhh
Confidence                          111111 12 368999999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.47  E-value=4.5e-13  Score=104.63  Aligned_cols=106  Identities=22%  Similarity=0.300  Sum_probs=80.4

Q ss_pred             CCCCCccc----ccccccccc---cCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCcccc
Q 031970            1 MNVIGQED----YNRLRPLSY---RGADVFVLAFSLVSR---ASYENVLKKWIPELQHYSP---GVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G~e~----~~~l~~~~~---~~ad~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~~---~~piilv~nK~D~~~~   67 (150)
                      |||||..+    ...+...++   ..++++|+|+|+++.   .++++. ..|..++..+.+   +.|+++|+||+|+.. 
T Consensus       211 aD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~-  288 (424)
T PRK12297        211 ADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPE-  288 (424)
T ss_pred             EECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcC-
Confidence            79999743    223444444   459999999999865   566666 777777776543   689999999999742 


Q ss_pred             cccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           68 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                                   ..+.+..+++.++. +++++||+++.|++++++.+.+.+...
T Consensus       289 -------------~~e~l~~l~~~l~~-~i~~iSA~tgeGI~eL~~~L~~~l~~~  329 (424)
T PRK12297        289 -------------AEENLEEFKEKLGP-KVFPISALTGQGLDELLYAVAELLEET  329 (424)
T ss_pred             -------------CHHHHHHHHHHhCC-cEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence                         23445566666665 899999999999999999999887654

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.46  E-value=2.3e-13  Score=112.08  Aligned_cols=103  Identities=16%  Similarity=0.283  Sum_probs=73.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      |||||++.|..++..+++.+|++|+|+|+++.   .+++.+ .    .+..  .++|+|+++||+|+......       
T Consensus       300 iDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I-~----~~k~--~~iPiIVViNKiDl~~~~~e-------  365 (742)
T CHL00189        300 LDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAI-N----YIQA--ANVPIIVAINKIDKANANTE-------  365 (742)
T ss_pred             EECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHH-H----HHHh--cCceEEEEEECCCccccCHH-------
Confidence            89999999999999999999999999999884   444433 1    2222  36899999999998653210       


Q ss_pred             CccCHHHHHH---HHHHcC-CcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           78 VPVTTAQGEE---LRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        78 ~~v~~~~~~~---~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                        ....++..   +...++ ..+++++||++|.|+.++++.+....
T Consensus       366 --~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        366 --RIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             --HHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence              01111111   122233 24899999999999999999998764

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.44  E-value=4.8e-13  Score=111.00  Aligned_cols=102  Identities=17%  Similarity=0.306  Sum_probs=72.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      ||||||+.|..++..+++.+|++|+|+|+++.   .+.+.+    . ....  .++|+|+++||+|+......       
T Consensus       342 iDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i----~-~a~~--~~vPiIVviNKiDl~~a~~e-------  407 (787)
T PRK05306        342 LDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAI----N-HAKA--AGVPIIVAINKIDKPGANPD-------  407 (787)
T ss_pred             EECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHH----H-HHHh--cCCcEEEEEECccccccCHH-------
Confidence            89999999999999999999999999999984   444432    1 1111  36999999999998653210       


Q ss_pred             CccCHHHHH---HHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           78 VPVTTAQGE---ELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        78 ~~v~~~~~~---~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                        -...++.   .++..++ ..+++++||++|.|+.++++.+...
T Consensus       408 --~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        408 --RVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             --HHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence              0111111   1223333 1389999999999999999998754

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.44  E-value=4.8e-13  Score=108.46  Aligned_cols=107  Identities=17%  Similarity=0.156  Sum_probs=80.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPG   76 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~   76 (150)
                      |||||+++|......++.++|++++|+|+++   +.+++.+  .++   ..  .++| +++|+||+|+.+....      
T Consensus        55 iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl--~il---~~--lgi~~iIVVlNK~Dlv~~~~~------  121 (581)
T TIGR00475        55 IDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHL--AVL---DL--LGIPHTIVVITKADRVNEEEI------  121 (581)
T ss_pred             EECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHH--HHH---HH--cCCCeEEEEEECCCCCCHHHH------
Confidence            8999999999888888999999999999998   5566554  222   22  2577 9999999999754321      


Q ss_pred             CCccCHHHHHHHHHHcC---CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           77 LVPVTTAQGEELRKQIG---ASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        77 ~~~v~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                        ....+++..+.+.++   ..+++++||++|.|+++++..+...+...
T Consensus       122 --~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       122 --KRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESL  168 (581)
T ss_pred             --HHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhC
Confidence              012345556666553   23899999999999999999988776544

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.44  E-value=4.2e-13  Score=108.59  Aligned_cols=110  Identities=16%  Similarity=0.182  Sum_probs=73.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc-------
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY-------   70 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~-------   70 (150)
                      ||||||+.|..++..+++.+|++++|+|+++   +.+++.+ . +   +..  .++|+++++||+|+...-..       
T Consensus        74 iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~-~---l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~  146 (590)
T TIGR00491        74 IDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEAL-N-I---LRM--YKTPFVVAANKIDRIPGWRSHEGRPFM  146 (590)
T ss_pred             EECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-H-H---HHH--cCCCEEEEEECCCccchhhhccCchHH
Confidence            8999999999999999999999999999997   5566554 2 2   222  26899999999998642100       


Q ss_pred             --ccCCCCCCccC-------HHHHHHHH-------------HHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           71 --LADHPGLVPVT-------TAQGEELR-------------KQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        71 --~~~~~~~~~v~-------~~~~~~~~-------------~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                        .....  ..+.       .....++.             ...+..+++++||++|+|+++++..+....
T Consensus       147 e~sak~~--~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       147 ESFSKQE--IQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHhhh--HHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence              00000  0000       00001111             112234899999999999999999886543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.44  E-value=8.6e-13  Score=90.79  Aligned_cols=102  Identities=20%  Similarity=0.223  Sum_probs=85.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      +|||||+||..+|+.+++++.++|++.|.+.+.++ +. ..++..+....+ +|+++.+||.|+.+..            
T Consensus        73 fgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a~------------  137 (187)
T COG2229          73 FGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRNP-IPVVVAINKQDLFDAL------------  137 (187)
T ss_pred             ecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HH-HHHHHHHhhccC-CCEEEEeeccccCCCC------------
Confidence            58999999999999999999999999999999999 43 566666555433 9999999999998765            


Q ss_pred             CHHHHHHHHHHc--CCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           81 TTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        81 ~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                      +.+.+.++....  .. +.++.+|..+.+..+.++.+...
T Consensus       138 ppe~i~e~l~~~~~~~-~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         138 PPEKIREALKLELLSV-PVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             CHHHHHHHHHhccCCC-ceeeeecccchhHHHHHHHHHhh
Confidence            556666666665  54 89999999999999999988876

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.44  E-value=2.2e-13  Score=107.45  Aligned_cols=96  Identities=18%  Similarity=0.199  Sum_probs=73.9

Q ss_pred             CCCCCcccccccc--------cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQEDYNRLR--------PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~~~~l~--------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||++++....        ..+++++|++++|+|++++.++++. ..|..     ..+.|+++|+||+|+.....   
T Consensus       268 ~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~~---  338 (449)
T PRK05291        268 IDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEID---  338 (449)
T ss_pred             EeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccch---
Confidence            8999998765432        2468899999999999999888765 44443     34789999999999865322   


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                              . .      ...+. +++++||+++.|++++++.+.+.+..
T Consensus       339 --------~-~------~~~~~-~~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        339 --------L-E------EENGK-PVIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             --------h-h------hccCC-ceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence                    1 1      22333 78999999999999999999988754

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=1.2e-13  Score=94.11  Aligned_cols=109  Identities=21%  Similarity=0.243  Sum_probs=85.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      ||-.||+..+++|..||..++++|+++|+++++.|+.. ..-.+.+....  .++|+++.+||.|+.+..          
T Consensus        74 wdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~-~t~~~~v~~~E~leg~p~L~lankqd~q~~~----------  142 (197)
T KOG0076|consen   74 WDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEES-KTAFEKVVENEKLEGAPVLVLANKQDLQNAM----------  142 (197)
T ss_pred             EEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHH-HHHHHHHHHHHHhcCCchhhhcchhhhhhhh----------
Confidence            99999999999999999999999999999999999887 44444444332  589999999999987653          


Q ss_pred             ccCHHHHHHHHH---Hc--CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           79 PVTTAQGEELRK---QI--GASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        79 ~v~~~~~~~~~~---~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                        ...++.....   ..  .-.++.++||.+|+||.+-+.++++.+..+
T Consensus       143 --~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  143 --EAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             --hHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence              2233333332   11  123689999999999999999999988755

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.42  E-value=6.5e-13  Score=104.51  Aligned_cols=98  Identities=17%  Similarity=0.203  Sum_probs=74.8

Q ss_pred             CCCCCcccccccc--------cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQEDYNRLR--------PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~~~~l~--------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||+.++....        ..+++++|++++|||++++.++++.   |+..+..  .+.|+++|+||+|+...     
T Consensus       256 ~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~-----  325 (442)
T TIGR00450       256 LDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN-----  325 (442)
T ss_pred             eeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc-----
Confidence            8999997655432        3578999999999999999887763   6655543  36899999999998532     


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                                 ....+++.++. +++++||++ .||+++|+.+.+.+.+
T Consensus       326 -----------~~~~~~~~~~~-~~~~vSak~-~gI~~~~~~L~~~i~~  361 (442)
T TIGR00450       326 -----------SLEFFVSSKVL-NSSNLSAKQ-LKIKALVDLLTQKINA  361 (442)
T ss_pred             -----------chhhhhhhcCC-ceEEEEEec-CCHHHHHHHHHHHHHH
Confidence                       11234555665 789999998 6999999999887754

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.41  E-value=2.2e-13  Score=88.63  Aligned_cols=63  Identities=27%  Similarity=0.537  Sum_probs=54.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHH--HHHHHHHhhhCCCCCEEEEeeCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL--KKWIPELQHYSPGVPVVLVGTKLD   63 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~--~~~~~~i~~~~~~~piilv~nK~D   63 (150)
                      ||++|++.+...++..+..+|++++|||++++.|++.+.  ..|+..+....+++|+++|+||.|
T Consensus        55 ~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   55 WDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            899999999998888899999999999999999999862  346777777667899999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.41  E-value=8.5e-13  Score=107.15  Aligned_cols=101  Identities=17%  Similarity=0.191  Sum_probs=76.0

Q ss_pred             CCCCCccccccc------cccccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQEDYNRL------RPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~~~~l------~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||++++...      .+.++.  ++|++++|+|.++.+...    .+..++.+  .++|+++|+||+|+.+...   
T Consensus        46 vDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler~l----~l~~ql~~--~~~PiIIVlNK~Dl~~~~~---  116 (591)
T TIGR00437        46 VDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLERNL----YLTLQLLE--LGIPMILALNLVDEAEKKG---  116 (591)
T ss_pred             EECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchhhH----HHHHHHHh--cCCCEEEEEehhHHHHhCC---
Confidence            899999988764      233443  799999999999854321    23333333  3799999999999865433   


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                              ...+...+.+..++ +++++||+++.|++++++.+.+..
T Consensus       117 --------i~~d~~~L~~~lg~-pvv~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       117 --------IRIDEEKLEERLGV-PVVPTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             --------ChhhHHHHHHHcCC-CEEEEECCCCCCHHHHHHHHHHHh
Confidence                    23456778888887 999999999999999999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd01895 EngA2 EngA2 subfamily

Probab=99.40  E-value=2.8e-12  Score=87.79  Aligned_cols=104  Identities=23%  Similarity=0.295  Sum_probs=71.0

Q ss_pred             CCCCCccccccc----------c-cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccc
Q 031970            1 MNVIGQEDYNRL----------R-PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH   69 (150)
Q Consensus         1 wDt~G~e~~~~l----------~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~   69 (150)
                      |||||..+....          . ..++..+|++++|+|++++.+....  .+...+..  .+.|+++++||+|+.....
T Consensus        55 iDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~nK~Dl~~~~~  130 (174)
T cd01895          55 IDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL--RIAGLILE--EGKALVIVVNKWDLVEKDS  130 (174)
T ss_pred             EECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHh--cCCCEEEEEeccccCCccH
Confidence            899997654221          1 1256789999999999998877654  34444333  2689999999999876421


Q ss_pred             cccCCCCCCccCHHH-HHHHHHHcC---CcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           70 YLADHPGLVPVTTAQ-GEELRKQIG---ASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        70 ~~~~~~~~~~v~~~~-~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                      .          .... ...+.+..+   ..+++++||+++.|+.++++.+.+.
T Consensus       131 ~----------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         131 K----------TMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             H----------HHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence            1          1122 222223332   3489999999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK11058 GTPase HflX; Provisional

Probab=99.39  E-value=2.5e-12  Score=100.79  Aligned_cols=105  Identities=17%  Similarity=0.206  Sum_probs=73.4

Q ss_pred             CCCCCcccc--ccccc------ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccc
Q 031970            1 MNVIGQEDY--NRLRP------LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYL   71 (150)
Q Consensus         1 wDt~G~e~~--~~l~~------~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~   71 (150)
                      |||||..+.  ..++.      ..+++||++|+|+|++++.+++++ ..|...+.... .+.|+++|+||+|+.....  
T Consensus       250 ~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~--  326 (426)
T PRK11058        250 ADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE--  326 (426)
T ss_pred             EecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCCchh--
Confidence            899998442  12222      246899999999999999888876 55544444433 3799999999999864211  


Q ss_pred             cCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           72 ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                                 ....  ....+...++++||++|.|++++++.+.+.+..
T Consensus       327 -----------~~~~--~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        327 -----------PRID--RDEENKPIRVWLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             -----------HHHH--HHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence                       1111  112344235889999999999999999998854

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.39  E-value=1.4e-12  Score=88.11  Aligned_cols=95  Identities=18%  Similarity=0.223  Sum_probs=71.2

Q ss_pred             CCCCCccccccc--------ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQEDYNRL--------RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~~~~l--------~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||..++...        ....+..+|++++|+|++++.+..+. ..+..     ..+.|+++|+||+|+.+...   
T Consensus        54 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~~~~---  124 (157)
T cd04164          54 IDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDL-EILEL-----PADKPIIVVLNKSDLLPDSE---  124 (157)
T ss_pred             EECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHH-HHHHh-----hcCCCEEEEEEchhcCCccc---
Confidence            899998766432        22467799999999999998888765 33322     34799999999999875432   


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                              .      .....+ .+++++||+++.|+.+++..|...+
T Consensus       125 --------~------~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         125 --------L------LSLLAG-KPIIAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             --------c------ccccCC-CceEEEECCCCCCHHHHHHHHHHhh
Confidence                    1      223334 4899999999999999999987753

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.38  E-value=2.7e-12  Score=100.94  Aligned_cols=100  Identities=19%  Similarity=0.236  Sum_probs=70.2

Q ss_pred             CCCCCccc--------ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQED--------YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~--------~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||++.        +......++.++|++|+|+|++++.+..+.  .+...+.+.  +.|+++|+||+|+....    
T Consensus        54 iDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~~----  125 (435)
T PRK00093         54 IDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDEE----  125 (435)
T ss_pred             EECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccch----
Confidence            89999987        222345578899999999999986554432  222223332  68999999999964311    


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                                .....+ ...++..++++||++|.|+.++++.++...
T Consensus       126 ----------~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~  161 (435)
T PRK00093        126 ----------ADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILEEL  161 (435)
T ss_pred             ----------hhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHhhC
Confidence                      122222 345654689999999999999999998844

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.38  E-value=9.1e-13  Score=103.46  Aligned_cols=105  Identities=15%  Similarity=0.060  Sum_probs=70.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL-KKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~-~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|......++..+|++++|+|+++..++.... ..+. .+.+.....|+++|+||+|+......      ...
T Consensus        90 iDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~~~~~iIVviNK~Dl~~~~~~------~~~  162 (426)
T TIGR00483        90 VDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTLGINQLIVAINKMDSVNYDEE------EFE  162 (426)
T ss_pred             EECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHcCCCeEEEEEEChhccCccHH------HHH
Confidence            899999999776666789999999999999875432210 1111 12222234579999999998642110      001


Q ss_pred             cCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHHH
Q 031970           80 VTTAQGEELRKQIGA----SYYIECSSKTQQNVKAVF  112 (150)
Q Consensus        80 v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~  112 (150)
                      ....++..+++..++    .+++++||+++.|+.+++
T Consensus       163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence            134566677777663    379999999999998743

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd00880 Era_like Era (E

Probab=99.37  E-value=3.7e-12  Score=85.47  Aligned_cols=105  Identities=21%  Similarity=0.215  Sum_probs=75.4

Q ss_pred             CCCCCccccccccc-------ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccC
Q 031970            1 MNVIGQEDYNRLRP-------LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD   73 (150)
Q Consensus         1 wDt~G~e~~~~l~~-------~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~   73 (150)
                      |||||+..+.....       .+++.+|++++|+|..+..+.... . +......  .+.|+++|+||.|+......   
T Consensus        50 ~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~-~-~~~~~~~--~~~~~ivv~nK~D~~~~~~~---  122 (163)
T cd00880          50 IDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEE-K-LLELLRE--RGKPVLLVLNKIDLLPEEEE---  122 (163)
T ss_pred             EECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-H-HHHHHHh--cCCeEEEEEEccccCChhhH---
Confidence            89999988765554       378899999999999998888765 2 3333332  37999999999998764321   


Q ss_pred             CCCCCccCHHH--HHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           74 HPGLVPVTTAQ--GEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        74 ~~~~~~v~~~~--~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                             ....  ...........+++++||+++.|+.++++.+.+.+
T Consensus       123 -------~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~~  163 (163)
T cd00880         123 -------EELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEAL  163 (163)
T ss_pred             -------HHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhhC
Confidence                   1110  11222222334899999999999999999998753

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.37  E-value=2.4e-12  Score=100.97  Aligned_cols=103  Identities=19%  Similarity=0.271  Sum_probs=76.5

Q ss_pred             CCCCCc--------ccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQ--------EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~--------e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||.        +.+......++++||++++|+|.++..+..+.  .+...+++.  ++|+++|+||+|+.....   
T Consensus        52 iDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~~~---  124 (429)
T TIGR03594        52 IDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDE--EIAKWLRKS--GKPVILVANKIDGKKEDA---  124 (429)
T ss_pred             EECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEECccCCcccc---
Confidence            899996        44445566688999999999999986655542  344444442  689999999999865321   


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                              ...   . +..+++.+++++||++|.|+.++++.+.+.+...
T Consensus       125 --------~~~---~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~  162 (429)
T TIGR03594       125 --------VAA---E-FYSLGFGEPIPISAEHGRGIGDLLDAILELLPEE  162 (429)
T ss_pred             --------cHH---H-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcc
Confidence                    111   1 3456666899999999999999999999888553

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.36  E-value=2.2e-12  Score=100.67  Aligned_cols=107  Identities=20%  Similarity=0.159  Sum_probs=75.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChh----hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA----SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG   76 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~----s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~   76 (150)
                      ||||||++|...+..+...+|++++|+|+++..    +.+.+     ..+. .....|+++|+||+|+.+....      
T Consensus        85 iDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l-----~~l~-~~gi~~iIVvvNK~Dl~~~~~~------  152 (406)
T TIGR03680        85 VDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHL-----MALE-IIGIKNIVIVQNKIDLVSKEKA------  152 (406)
T ss_pred             EECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHH-----HHHH-HcCCCeEEEEEEccccCCHHHH------
Confidence            799999999887777888899999999999643    34433     2222 2223579999999998753210      


Q ss_pred             CCccCHHHHHHHHHHc---CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           77 LVPVTTAQGEELRKQI---GASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        77 ~~~v~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                        .....++..+....   ++ +++++||+++.|++++++.|...+..+
T Consensus       153 --~~~~~~i~~~l~~~~~~~~-~ii~vSA~~g~gi~~L~e~L~~~l~~~  198 (406)
T TIGR03680       153 --LENYEEIKEFVKGTVAENA-PIIPVSALHNANIDALLEAIEKFIPTP  198 (406)
T ss_pred             --HHHHHHHHhhhhhcccCCC-eEEEEECCCCCChHHHHHHHHHhCCCC
Confidence              00123334444433   44 899999999999999999999876543

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK00089 era GTPase Era; Reviewed

Probab=99.36  E-value=4.1e-12  Score=95.09  Aligned_cols=108  Identities=19%  Similarity=0.217  Sum_probs=77.1

Q ss_pred             CCCCCccccc--------ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQEDYN--------RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~~~--------~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||.....        .....++.++|++++|+|+++..+...  ..++..+..  .+.|+++|+||+|+......  
T Consensus        58 iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~--~~i~~~l~~--~~~pvilVlNKiDl~~~~~~--  131 (292)
T PRK00089         58 VDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGD--EFILEKLKK--VKTPVILVLNKIDLVKDKEE--  131 (292)
T ss_pred             EECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhH--HHHHHHHhh--cCCCEEEEEECCcCCCCHHH--
Confidence            7999975432        222346789999999999998433222  233444442  36899999999999743221  


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                              .......+.+..+..+++++||+++.|++++++.+...+...
T Consensus       132 --------l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~  173 (292)
T PRK00089        132 --------LLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEG  173 (292)
T ss_pred             --------HHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence                    345556666666666899999999999999999999988653

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.34  E-value=2.5e-12  Score=106.59  Aligned_cols=109  Identities=17%  Similarity=0.160  Sum_probs=74.5

Q ss_pred             CCCCCcc----------cccccc-cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccc
Q 031970            1 MNVIGQE----------DYNRLR-PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH   69 (150)
Q Consensus         1 wDt~G~e----------~~~~l~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~   69 (150)
                      |||||+.          .|..+. ..+++.+|++++|+|+++..++++.  .+...+..  .++|+++|+||+|+.+...
T Consensus       503 iDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~--~i~~~~~~--~~~piIiV~NK~DL~~~~~  578 (712)
T PRK09518        503 IDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDL--KVMSMAVD--AGRALVLVFNKWDLMDEFR  578 (712)
T ss_pred             EECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEEchhcCChhH
Confidence            8999953          333332 2357899999999999999888875  34444543  3799999999999875321


Q ss_pred             cccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           70 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        70 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      .        .................+++++||++|.|++++++.+.+.+..
T Consensus       579 ~--------~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        579 R--------QRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             H--------HHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            0        0011111111112234477999999999999999999887754

>cd04163 Era Era subfamily

Probab=99.34  E-value=4.9e-12  Score=85.84  Aligned_cols=104  Identities=17%  Similarity=0.183  Sum_probs=73.5

Q ss_pred             CCCCCcccccc--------cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQEDYNR--------LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~~~~--------l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||......        ....++..+|++++|+|++++.+...  ..+...+...  +.|+++|+||+|+......  
T Consensus        56 iDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~--~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~--  129 (168)
T cd04163          56 VDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGD--EFILELLKKS--KTPVILVLNKIDLVKDKED--  129 (168)
T ss_pred             EECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchH--HHHHHHHHHh--CCCEEEEEEchhccccHHH--
Confidence            79999765432        23346789999999999998733322  3344444433  5899999999998743221  


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                              .......+....+..+++++|++++.|++++++.|.+.
T Consensus       130 --------~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         130 --------LLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY  167 (168)
T ss_pred             --------HHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence                    33444555555544589999999999999999999765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.34  E-value=3.9e-12  Score=103.67  Aligned_cols=105  Identities=16%  Similarity=0.191  Sum_probs=76.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPG   76 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~   76 (150)
                      |||||+++|.......+.++|++++|+|+++   +.+.+.+  .+   +...  ++| +++|+||+|+.+....      
T Consensus        56 IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl--~i---l~~l--gi~~iIVVlNKiDlv~~~~~------  122 (614)
T PRK10512         56 IDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHL--AI---LQLT--GNPMLTVALTKADRVDEARI------  122 (614)
T ss_pred             EECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHH--HH---HHHc--CCCeEEEEEECCccCCHHHH------
Confidence            7999999998777778999999999999997   4455543  22   2221  456 5799999998753221      


Q ss_pred             CCccCHHHHHHHHHHcCC--cEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           77 LVPVTTAQGEELRKQIGA--SYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                        ....+++..+....++  .+++++||++|.|++++++.|.....
T Consensus       123 --~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~  166 (614)
T PRK10512        123 --AEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPE  166 (614)
T ss_pred             --HHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence              0123455555555442  48999999999999999999987654

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.33  E-value=6e-12  Score=98.41  Aligned_cols=108  Identities=19%  Similarity=0.133  Sum_probs=72.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR----ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG   76 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~   76 (150)
                      |||||+++|..........+|++++|+|++++    .+.+.+ .    .+.. ....|+++|+||+|+.+....      
T Consensus        90 iDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~----~l~~-~~i~~iiVVlNK~Dl~~~~~~------  157 (411)
T PRK04000         90 VDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-M----ALDI-IGIKNIVIVQNKIDLVSKERA------  157 (411)
T ss_pred             EECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-H----HHHH-cCCCcEEEEEEeeccccchhH------
Confidence            89999999876444455567999999999964    333332 1    2222 122479999999998753220      


Q ss_pred             CCccCHHHHHHHHHHc--CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           77 LVPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        77 ~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                        ....+++..+++.+  ...+++++||+++.|++++++.|...+..+
T Consensus       158 --~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~  203 (411)
T PRK04000        158 --LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTP  203 (411)
T ss_pred             --HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCC
Confidence              00123344444332  113899999999999999999999877543

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.33  E-value=4.2e-12  Score=105.29  Aligned_cols=102  Identities=19%  Similarity=0.215  Sum_probs=72.9

Q ss_pred             CCCCCccc--------ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQED--------YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~--------~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||.+.        +......+++.||++|+|+|+++..+..+  ..|...+..  .+.|+++|+||+|+....    
T Consensus       328 iDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d--~~i~~~Lr~--~~~pvIlV~NK~D~~~~~----  399 (712)
T PRK09518        328 VDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD--ERIVRMLRR--AGKPVVLAVNKIDDQASE----  399 (712)
T ss_pred             EeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHh--cCCCEEEEEECcccccch----
Confidence            89999874        22333457899999999999987544433  356666654  379999999999975421    


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                                .....+ ...+....+++||++|.||.++++.+++.+..
T Consensus       400 ----------~~~~~~-~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        400 ----------YDAAEF-WKLGLGEPYPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             ----------hhHHHH-HHcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence                      111222 12343356899999999999999999998854

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.32  E-value=4e-12  Score=103.18  Aligned_cols=109  Identities=15%  Similarity=0.155  Sum_probs=80.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|......+++.+|++++|+|+++...-+.  ..|+..+...  ++|+|+|+||+|+......         .
T Consensus        69 IDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT--~~~l~~a~~~--~ip~IVviNKiD~~~a~~~---------~  135 (594)
T TIGR01394        69 VDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQT--RFVLKKALEL--GLKPIVVINKIDRPSARPD---------E  135 (594)
T ss_pred             EECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHH--HHHHHHHHHC--CCCEEEEEECCCCCCcCHH---------H
Confidence            7999999999988999999999999999987543332  4555555443  6899999999998653211         0


Q ss_pred             CHHHHHHHHHH-------cCCcEEEEeccCCCC----------CHHHHHHHHHHHHhCCC
Q 031970           81 TTAQGEELRKQ-------IGASYYIECSSKTQQ----------NVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        81 ~~~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~~~~~~  123 (150)
                      ...++..+...       ..+ +++++||+++.          |+..+|+.+++.+..+.
T Consensus       136 v~~ei~~l~~~~g~~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~  194 (594)
T TIGR01394       136 VVDEVFDLFAELGADDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK  194 (594)
T ss_pred             HHHHHHHHHHhhccccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence            22333333322       234 78999999996          79999999999987653

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.32  E-value=3.7e-12  Score=100.17  Aligned_cols=107  Identities=17%  Similarity=0.154  Sum_probs=73.1

Q ss_pred             CCCCCccccccc----------c-cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccc
Q 031970            1 MNVIGQEDYNRL----------R-PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH   69 (150)
Q Consensus         1 wDt~G~e~~~~l----------~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~   69 (150)
                      |||||..+...+          . ..+++.+|++|+|+|++++.+.++.  .+...+.+.  +.|+++|+||+|+.....
T Consensus       226 vDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~~--~~~~ivv~NK~Dl~~~~~  301 (435)
T PRK00093        226 IDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDL--RIAGLALEA--GRALVIVVNKWDLVDEKT  301 (435)
T ss_pred             EECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCCCHHH
Confidence            799996543322          2 2367899999999999998888774  455454442  689999999999874321


Q ss_pred             cccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           70 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        70 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      .        ..............+..+++++||+++.|++++++.+.+..
T Consensus       302 ~--------~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~  343 (435)
T PRK00093        302 M--------EEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAY  343 (435)
T ss_pred             H--------HHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence            0        00112222222223345899999999999999999887654

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.31  E-value=1.2e-11  Score=96.07  Aligned_cols=110  Identities=18%  Similarity=0.212  Sum_probs=79.1

Q ss_pred             CCCCCcccccc----ccc---ccccCCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccc
Q 031970            1 MNVIGQEDYNR----LRP---LSYRGADVFVLAFSLV---SRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G~e~~~~----l~~---~~~~~ad~~i~v~d~~---~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~   67 (150)
                      +||||..+=..    +..   .++.+++++++|+|++   +...+++. ..|.+++....   .+.|+++|+||+|+...
T Consensus       212 vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~  290 (390)
T PRK12298        212 ADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDE  290 (390)
T ss_pred             EeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCCh
Confidence            69999754111    111   2577899999999998   45566665 77877777654   36899999999998653


Q ss_pred             cccccCCCCCCccCHHHHHHHHHHcCCc-EEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           68 KHYLADHPGLVPVTTAQGEELRKQIGAS-YYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ..           ..+.+..+.+..+.. +++++||+++.|++++++.+.+.+.+.
T Consensus       291 ~e-----------l~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        291 EE-----------AEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             HH-----------HHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence            22           234444555554432 689999999999999999999988653

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.31  E-value=4.4e-12  Score=99.56  Aligned_cols=103  Identities=15%  Similarity=0.070  Sum_probs=67.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCC--hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS--RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~--~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|.......++.+|++|+|+|+++  ...-+.  .+++..+.. ....|+++++||+|+......      ..
T Consensus        89 iDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~--~~~~~~~~~-~~~~~iivviNK~Dl~~~~~~------~~  159 (425)
T PRK12317         89 VDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQT--REHVFLART-LGINQLIVAINKMDAVNYDEK------RY  159 (425)
T ss_pred             EECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcch--HHHHHHHHH-cCCCeEEEEEEccccccccHH------HH
Confidence            8999999987755566789999999999997  222221  122222222 222469999999998752110      00


Q ss_pred             ccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHHH
Q 031970           79 PVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAVF  112 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~  112 (150)
                      ....+++..+++..++    .+++++||++|.|+.++.
T Consensus       160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            0133455666666653    379999999999998744

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.30  E-value=1.1e-11  Score=100.62  Aligned_cols=111  Identities=15%  Similarity=0.164  Sum_probs=72.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc-cc----
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY-LA----   72 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~-~~----   72 (150)
                      |||||++.|..++..+++.+|++++|+|+++   +.+++.+ ..    +..  .++|+++++||+|+...-.. .+    
T Consensus        76 iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~~----~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~  148 (586)
T PRK04004         76 IDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAI-NI----LKR--RKTPFVVAANKIDRIPGWKSTEDAPFL  148 (586)
T ss_pred             EECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-HH----HHH--cCCCEEEEEECcCCchhhhhhcCchHH
Confidence            8999999999999889999999999999998   6666654 22    222  37899999999998521100 00    


Q ss_pred             CCCC--CCccCH------HHHHHHHHHc--------------CCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           73 DHPG--LVPVTT------AQGEELRKQI--------------GASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        73 ~~~~--~~~v~~------~~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                      ....  ...+..      .+........              +..+++++||++|.|+.+++..+...
T Consensus       149 e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~  216 (586)
T PRK04004        149 ESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL  216 (586)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence            0000  000000      0011111211              22479999999999999999887643

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.29  E-value=9.5e-12  Score=82.59  Aligned_cols=113  Identities=12%  Similarity=0.056  Sum_probs=80.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      ||-.||-..+.+|++||.+.+++|+|.|.+|.....-...+++..+.+.. .+..+++++||.|.......       .+
T Consensus        67 wdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~-------~E  139 (182)
T KOG0072|consen   67 WDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTR-------SE  139 (182)
T ss_pred             eEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhH-------HH
Confidence            89999999999999999999999999999997655443344555555433 35788999999997653210       00


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +......+-.+..-+ .++++||.+|+|++++.++|.+.+..
T Consensus       140 ~~~~L~l~~Lk~r~~-~Iv~tSA~kg~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  140 VLKMLGLQKLKDRIW-QIVKTSAVKGEGLDPAMDWLQRPLKS  180 (182)
T ss_pred             HHHHhChHHHhhhee-EEEeeccccccCCcHHHHHHHHHHhc
Confidence            111111112222234 89999999999999999999987754

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.29  E-value=1.5e-11  Score=86.57  Aligned_cols=107  Identities=21%  Similarity=0.147  Sum_probs=72.2

Q ss_pred             CCCCC----------cccccccccccccCC---cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970            1 MNVIG----------QEDYNRLRPLSYRGA---DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G----------~e~~~~l~~~~~~~a---d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      |||||          ++++..+...+++.+   +++++|+|.+++.+..+.  .+...+..  .+.|+++++||.|+.+.
T Consensus        75 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~--~~~~~iiv~nK~Dl~~~  150 (196)
T PRK00454         75 VDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKE--YGIPVLIVLTKADKLKK  150 (196)
T ss_pred             eCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHH--cCCcEEEEEECcccCCH
Confidence            89999          455666666677655   678899998876555432  22222322  36899999999998654


Q ss_pred             cccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           68 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      ...        ......+......... +++++||+++.|+.++++.+.+.+-
T Consensus       151 ~~~--------~~~~~~i~~~l~~~~~-~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        151 GER--------KKQLKKVRKALKFGDD-EVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             HHH--------HHHHHHHHHHHHhcCC-ceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            221        0122334444444444 8999999999999999999887654

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.28  E-value=2.2e-11  Score=96.67  Aligned_cols=108  Identities=16%  Similarity=0.140  Sum_probs=72.7

Q ss_pred             CCCCCcccc----cccccc---cccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhhC------------CCCCEEE
Q 031970            1 MNVIGQEDY----NRLRPL---SYRGADVFVLAFSLVSR----ASYENVLKKWIPELQHYS------------PGVPVVL   57 (150)
Q Consensus         1 wDt~G~e~~----~~l~~~---~~~~ad~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~------------~~~piil   57 (150)
                      |||||..+-    ..+...   ++..++++|+|+|+++.    ..++++ ..|..++..+.            .+.|+|+
T Consensus       211 aDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IV  289 (500)
T PRK12296        211 ADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLV  289 (500)
T ss_pred             EECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEE
Confidence            799996321    112222   45679999999999863    244443 44554554332            3689999


Q ss_pred             EeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           58 VGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        58 v~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      |+||+|+.+...           ..+.........++ +++++||+++.|+.+++..|.+.+..
T Consensus       290 VlNKiDL~da~e-----------l~e~l~~~l~~~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~  341 (500)
T PRK12296        290 VLNKIDVPDARE-----------LAEFVRPELEARGW-PVFEVSAASREGLRELSFALAELVEE  341 (500)
T ss_pred             EEECccchhhHH-----------HHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            999999865322           22223333345566 89999999999999999999887754

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.28  E-value=8.1e-12  Score=89.27  Aligned_cols=102  Identities=19%  Similarity=0.125  Sum_probs=66.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|......+++.+|++|+|+|++++..-+..  .....+... ...++|+|+||+|+......      ....
T Consensus        82 iDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~-~~~~iIvviNK~D~~~~~~~------~~~~  152 (208)
T cd04166          82 ADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSLL-GIRHVVVAVNKMDLVDYSEE------VFEE  152 (208)
T ss_pred             EECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHc-CCCcEEEEEEchhcccCCHH------HHHH
Confidence            79999999876666678999999999999986433321  222222221 22457889999998642110      0001


Q ss_pred             CHHHHHHHHHHcCC--cEEEEeccCCCCCHHHH
Q 031970           81 TTAQGEELRKQIGA--SYYIECSSKTQQNVKAV  111 (150)
Q Consensus        81 ~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~  111 (150)
                      ...++..+.+.++.  .+++++||+++.|+.+.
T Consensus       153 i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         153 IVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            23455566666664  25899999999999854

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK10218 GTP-binding protein; Provisional

Probab=99.26  E-value=1.8e-11  Score=99.49  Aligned_cols=109  Identities=13%  Similarity=0.081  Sum_probs=79.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+.+|...+..+++.+|++|+|+|+++....+..  .++..+..  .++|+++++||+|+......         -
T Consensus        73 iDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~--~~l~~a~~--~gip~IVviNKiD~~~a~~~---------~  139 (607)
T PRK10218         73 VDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTR--FVTKKAFA--YGLKPIVVINKVDRPGARPD---------W  139 (607)
T ss_pred             EECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHH--HHHHHHHH--cCCCEEEEEECcCCCCCchh---------H
Confidence            89999999999999999999999999999986544432  33333333  37899999999998754321         0


Q ss_pred             CHHHHHHHHHH-------cCCcEEEEeccCCCC----------CHHHHHHHHHHHHhCCC
Q 031970           81 TTAQGEELRKQ-------IGASYYIECSSKTQQ----------NVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        81 ~~~~~~~~~~~-------~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~~~~~~  123 (150)
                      ...++..+...       ..+ |++.+||++|.          ++..+++.++..+..+.
T Consensus       140 vl~ei~~l~~~l~~~~~~~~~-PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~  198 (607)
T PRK10218        140 VVDQVFDLFVNLDATDEQLDF-PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD  198 (607)
T ss_pred             HHHHHHHHHhccCccccccCC-CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence            22333333322       233 78999999998          58899999999887653

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.26  E-value=3.6e-11  Score=86.94  Aligned_cols=103  Identities=17%  Similarity=0.134  Sum_probs=68.9

Q ss_pred             CCCCccccccccccccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            2 NVIGQEDYNRLRPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      ||||+++|.......+.  .+|++++|+|+.....-++  ..++..+...  ++|+++|.||+|+.+....        .
T Consensus        90 DtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~--------~  157 (224)
T cd04165          90 DLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALAL--NIPVFVVVTKIDLAPANIL--------Q  157 (224)
T ss_pred             ECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEECccccCHHHH--------H
Confidence            99999999765444443  6899999999987655443  3444444443  6899999999998654221        0


Q ss_pred             cCHHHHHHHHHH-------------------------cCCcEEEEeccCCCCCHHHHHHHHH
Q 031970           80 VTTAQGEELRKQ-------------------------IGASYYIECSSKTQQNVKAVFDAAI  116 (150)
Q Consensus        80 v~~~~~~~~~~~-------------------------~~~~~~~~~Sa~~~~~i~~~~~~l~  116 (150)
                      ....++..+.+.                         ....|++.+||.+|.|++++...|.
T Consensus       158 ~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         158 ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            012222222221                         1134899999999999999987764

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04167 Snu114p Snu114p subfamily

Probab=99.26  E-value=1.3e-11  Score=88.46  Aligned_cols=115  Identities=18%  Similarity=0.151  Sum_probs=73.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||||+++|......++..+|++++|+|+++..+...  ..|+.....  .+.|+++|+||+|+...+....  ......
T Consensus        76 iDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~--~~~p~iiviNK~D~~~~~~~l~~~~~~~~l  151 (213)
T cd04167          76 IDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAIL--EGLPIVLVINKIDRLILELKLPPNDAYFKL  151 (213)
T ss_pred             EECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECcccCcccccCCHHHHHHHH
Confidence            8999999998888889999999999999998776654  345554433  2589999999999752110000  000000


Q ss_pred             ccCHHHHHHHHHHcCC------cE----EEEeccCCCCCHH--------HHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQIGA------SY----YIECSSKTQQNVK--------AVFDAAIKVV  119 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~------~~----~~~~Sa~~~~~i~--------~~~~~l~~~~  119 (150)
                      .-..+++..++..++.      .|    +++.|++.+.++.        ++++.+...+
T Consensus       152 ~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~  210 (213)
T cd04167         152 RHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNI  210 (213)
T ss_pred             HHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence            0112334444444432      12    6788999887665        5555555544

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.25  E-value=3.1e-11  Score=102.59  Aligned_cols=111  Identities=22%  Similarity=0.266  Sum_probs=71.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      ||||||+.|..++..++..+|++++|+|+++   +.+++.+ .    .+..  .++|+++|+||+|+...-.......-.
T Consensus       531 iDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I-~----~lk~--~~iPiIVViNKiDL~~~~~~~~~~~~~  603 (1049)
T PRK14845        531 IDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAI-N----ILRQ--YKTPFVVAANKIDLIPGWNISEDEPFL  603 (1049)
T ss_pred             EECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHH-H----HHHH--cCCCEEEEEECCCCccccccccchhhh
Confidence            8999999999988888999999999999997   5555544 2    2222  268999999999986421100000000


Q ss_pred             Ccc------CHHHHH----HH---HHH--------------cCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           78 VPV------TTAQGE----EL---RKQ--------------IGASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        78 ~~v------~~~~~~----~~---~~~--------------~~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                      .++      ...+..    .+   ...              .+..+++++||++|+|+++++..+...
T Consensus       604 ~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        604 LNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence            000      000000    00   111              233589999999999999999877644

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=6.5e-11  Score=93.31  Aligned_cols=108  Identities=20%  Similarity=0.243  Sum_probs=85.6

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccC
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT   81 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~   81 (150)
                      |||||-+|+.-....+.-++|+|+|.|++...-.+-+ ..++..+..   +.-+|.|.||+|++....            
T Consensus       131 DTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~-anf~lAfe~---~L~iIpVlNKIDlp~adp------------  194 (650)
T KOG0462|consen  131 DTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTV-ANFYLAFEA---GLAIIPVLNKIDLPSADP------------  194 (650)
T ss_pred             cCCCcccccceehehhhhcCceEEEEEcCcCchHHHH-HHHHHHHHc---CCeEEEeeeccCCCCCCH------------
Confidence            9999999999999999999999999999997777665 455445544   688999999999988753            


Q ss_pred             HHHHHHHHHHcC--CcEEEEeccCCCCCHHHHHHHHHHHHhCCCcc
Q 031970           82 TAQGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQK  125 (150)
Q Consensus        82 ~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  125 (150)
                      .....++.+.+.  ..+.+.+||++|.|++++++.+++.+..|+..
T Consensus       195 e~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~  240 (650)
T KOG0462|consen  195 ERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKGI  240 (650)
T ss_pred             HHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCCCC
Confidence            223333333333  24789999999999999999999999876543

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.24  E-value=4.3e-11  Score=87.24  Aligned_cols=117  Identities=13%  Similarity=0.096  Sum_probs=81.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc---------c
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY---------L   71 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~---------~   71 (150)
                      |||||+.+|...+..+++.+|++++|+|.++....+.  ..+...+.+.  ++|+++++||+|+......         +
T Consensus        69 iDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~a~~~~~~~~i~~~~  144 (237)
T cd04168          69 IDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAGADLEKVYQEIKEKL  144 (237)
T ss_pred             EeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccCCCHHHHHHHHHHHH
Confidence            8999999999888899999999999999998765543  4555555543  6899999999998642100         0


Q ss_pred             cC------C--------------------------------CCCCccCHHHHH----HHHHHcCCcEEEEeccCCCCCHH
Q 031970           72 AD------H--------------------------------PGLVPVTTAQGE----ELRKQIGASYYIECSSKTQQNVK  109 (150)
Q Consensus        72 ~~------~--------------------------------~~~~~v~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~  109 (150)
                      ..      -                                -+..+++.+++.    .-...-.+.|++..||.++.|+.
T Consensus       145 ~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~  224 (237)
T cd04168         145 SSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIE  224 (237)
T ss_pred             CCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHH
Confidence            00      0                                001122322222    22223344688888999999999


Q ss_pred             HHHHHHHHHHhC
Q 031970          110 AVFDAAIKVVIK  121 (150)
Q Consensus       110 ~~~~~l~~~~~~  121 (150)
                      .+++.+.+.+..
T Consensus       225 ~ll~~~~~~~p~  236 (237)
T cd04168         225 ELLEGITKLFPT  236 (237)
T ss_pred             HHHHHHHHhcCC
Confidence            999999988754

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=1e-10  Score=92.07  Aligned_cols=99  Identities=17%  Similarity=0.335  Sum_probs=75.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      .|||||+-|..|+....+=+|++|+|.|++|   |++.+.+     +..+.  .++|+++..||+|+.+..         
T Consensus        60 iDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI-----~hak~--a~vP~iVAiNKiDk~~~n---------  123 (509)
T COG0532          60 IDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAI-----NHAKA--AGVPIVVAINKIDKPEAN---------  123 (509)
T ss_pred             EcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHH-----HHHHH--CCCCEEEEEecccCCCCC---------
Confidence            3999999999999999999999999999998   4455443     11111  379999999999998543         


Q ss_pred             CccCHHHHHHHHHHcCC--------cEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           78 VPVTTAQGEELRKQIGA--------SYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        78 ~~v~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                          +.....-.+.+++        ..++++||++|+|+.+++..+.-+.
T Consensus       124 ----p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a  169 (509)
T COG0532         124 ----PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLA  169 (509)
T ss_pred             ----HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence                2333333333333        4689999999999999999887544

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.22  E-value=5e-11  Score=86.02  Aligned_cols=61  Identities=18%  Similarity=0.162  Sum_probs=50.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR   65 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~   65 (150)
                      |||||+++|......+++.+|++++|+|+++..+.+..  ..+.....  .++|+++|+||+|+.
T Consensus        78 iDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~--~~l~~~~~--~~~p~ilviNKiD~~  138 (222)
T cd01885          78 IDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE--TVLRQALK--ERVKPVLVINKIDRL  138 (222)
T ss_pred             ECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECCCcc
Confidence            89999999999999999999999999999998766653  33333332  268999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.22  E-value=1.7e-11  Score=85.42  Aligned_cols=97  Identities=16%  Similarity=0.153  Sum_probs=64.9

Q ss_pred             CCCCCc----------ccccccccccccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970            1 MNVIGQ----------EDYNRLRPLSYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G~----------e~~~~l~~~~~~~---ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      |||||.          +.|..+...|++.   ++++++|+|++++.+..+.  .+...+..  .+.|+++|+||+|+...
T Consensus        69 iDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~--~~~pviiv~nK~D~~~~  144 (179)
T TIGR03598        69 VDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE--RGIPVLIVLTKADKLKK  144 (179)
T ss_pred             EeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCCH
Confidence            899994          3455555566664   5799999999987666654  33344443  26899999999998643


Q ss_pred             cccccCCCCCCccCHHHHHHHHHHcCC-cEEEEeccCCCCCHH
Q 031970           68 KHYLADHPGLVPVTTAQGEELRKQIGA-SYYIECSSKTQQNVK  109 (150)
Q Consensus        68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~  109 (150)
                      ...        ....+++...+...+. .+++++||++|+|++
T Consensus       145 ~~~--------~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       145 SEL--------NKQLKKIKKALKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             HHH--------HHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence            210        0133444555555432 279999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00098 GTPase RsgA; Reviewed

Probab=99.21  E-value=7.8e-11  Score=88.59  Aligned_cols=87  Identities=20%  Similarity=0.232  Sum_probs=66.7

Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 031970           17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY   96 (150)
Q Consensus        17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   96 (150)
                      ..++|++++|+|++++.++...++.|+..+..  .++|+++|+||+|+.+...           .........+..+. +
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~-----------~~~~~~~~~~~~g~-~  143 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLE-----------EARELLALYRAIGY-D  143 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHH-----------HHHHHHHHHHHCCC-e
Confidence            38999999999999887665555788776654  4799999999999863221           22334455566776 8


Q ss_pred             EEEeccCCCCCHHHHHHHHHH
Q 031970           97 YIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        97 ~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                      ++++||+++.|+++++..+..
T Consensus       144 v~~vSA~~g~gi~~L~~~l~g  164 (298)
T PRK00098        144 VLELSAKEGEGLDELKPLLAG  164 (298)
T ss_pred             EEEEeCCCCccHHHHHhhccC
Confidence            999999999999999987743

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.21  E-value=1.1e-10  Score=90.84  Aligned_cols=110  Identities=17%  Similarity=0.234  Sum_probs=89.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      -|||||-+|+.-....+..|.|+++|.|+++....+-+ ...+-.+..   +..+|-|.||+|++...            
T Consensus        81 IDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTl-AN~YlAle~---~LeIiPViNKIDLP~Ad------------  144 (603)
T COG0481          81 IDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALEN---NLEIIPVLNKIDLPAAD------------  144 (603)
T ss_pred             cCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHH-HHHHHHHHc---CcEEEEeeecccCCCCC------------
Confidence            39999999999888899999999999999998777766 555555554   68899999999998865            


Q ss_pred             CHHHHHHHHHHcCC--cEEEEeccCCCCCHHHHHHHHHHHHhCCCcch
Q 031970           81 TTAQGEELRKQIGA--SYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ  126 (150)
Q Consensus        81 ~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  126 (150)
                      +.....++-...|+  ...+.+|||+|.||+++++.+++.+..|....
T Consensus       145 pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~  192 (603)
T COG0481         145 PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDP  192 (603)
T ss_pred             HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCCC
Confidence            33444555555665  34789999999999999999999998775433

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.20  E-value=1.8e-11  Score=88.10  Aligned_cols=100  Identities=15%  Similarity=0.047  Sum_probs=63.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChh-------hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccc--ccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA-------SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK--HYL   71 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~-------s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~--~~~   71 (150)
                      |||||+.+|......+++.+|++|+|+|+++..       ..+.. ..+ .... .....|+++++||+|+....  .. 
T Consensus        82 iDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~~iiivvNK~Dl~~~~~~~~-  157 (219)
T cd01883          82 LDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTR-EHA-LLAR-TLGVKQLIVAVNKMDDVTVNWSEE-  157 (219)
T ss_pred             EECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchH-HHH-HHHH-HcCCCeEEEEEEccccccccccHH-
Confidence            799999988766666778899999999999842       11221 222 2222 22336899999999987321  00 


Q ss_pred             cCCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHH
Q 031970           72 ADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVK  109 (150)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~  109 (150)
                           ...-..+++..+....++    .+++++||++|.|+.
T Consensus       158 -----~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         158 -----RYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             -----HHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence                 000022333344455543    379999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.19  E-value=1.2e-11  Score=81.86  Aligned_cols=105  Identities=15%  Similarity=0.159  Sum_probs=80.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      ||+.||...+.+|..||.+.|++|+|+|.+|...|+++..++.+.+.... ..+|+.+.+||.|+...-.          
T Consensus        67 wDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~----------  136 (185)
T KOG0074|consen   67 WDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK----------  136 (185)
T ss_pred             EecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc----------
Confidence            99999999999999999999999999999999999988555555444332 4799999999999876432          


Q ss_pred             cCHHHHHH-----HHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           80 VTTAQGEE-----LRKQIGASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        80 v~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                        .++...     -.+...+ .+.++||.+++|+.+-.+.+...
T Consensus       137 --~eeia~klnl~~lrdRsw-hIq~csals~eg~~dg~~wv~sn  177 (185)
T KOG0074|consen  137 --VEEIALKLNLAGLRDRSW-HIQECSALSLEGSTDGSDWVQSN  177 (185)
T ss_pred             --hHHHHHhcchhhhhhceE-EeeeCccccccCccCcchhhhcC
Confidence              122211     1122223 67899999999999888877654

>PRK12736 elongation factor Tu; Reviewed

Probab=99.17  E-value=8.3e-11  Score=91.60  Aligned_cols=110  Identities=18%  Similarity=0.206  Sum_probs=74.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|.......+..+|++++|+|+++...-+.  .+++..+...  ++| +|++.||+|+.+....       .+
T Consensus        80 iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t--~~~~~~~~~~--g~~~~IvviNK~D~~~~~~~-------~~  148 (394)
T PRK12736         80 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT--REHILLARQV--GVPYLVVFLNKVDLVDDEEL-------LE  148 (394)
T ss_pred             EECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCEEEEEEEecCCcchHHH-------HH
Confidence            6999999997766666788999999999987433332  2233333332  678 6789999998743211       00


Q ss_pred             cCHHHHHHHHHHcCC----cEEEEeccCCCC--------CHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGA----SYYIECSSKTQQ--------NVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~----~~~~~~Sa~~~~--------~i~~~~~~l~~~~~~  121 (150)
                      ...+++..+....++    .+++++||+++.        ++.++++.+.+.+..
T Consensus       149 ~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~  202 (394)
T PRK12736        149 LVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPT  202 (394)
T ss_pred             HHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCC
Confidence            123455666666653    489999999983        578888888777653

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.16  E-value=1.4e-10  Score=82.19  Aligned_cols=96  Identities=18%  Similarity=0.209  Sum_probs=66.8

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCCCcc
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      ||||+.+|.......+..+|++++|+|+.....-+.  .+.+..+...  ++| +|++.||+|+......       ...
T Consensus        71 DtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~-------~~~  139 (195)
T cd01884          71 DCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQT--REHLLLARQV--GVPYIVVFLNKADMVDDEEL-------LEL  139 (195)
T ss_pred             ECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCcEEEEEeCCCCCCcHHH-------HHH
Confidence            999999988777778889999999999987544433  2344444443  566 7899999998632210       011


Q ss_pred             CHHHHHHHHHHcCC----cEEEEeccCCCCCH
Q 031970           81 TTAQGEELRKQIGA----SYYIECSSKTQQNV  108 (150)
Q Consensus        81 ~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i  108 (150)
                      ..+++..+....++    .+++++||++|.|+
T Consensus       140 ~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         140 VEMEVRELLSKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence            33455566665543    58999999999885

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01855 YqeH YqeH

Probab=99.16  E-value=1.6e-10  Score=81.41  Aligned_cols=95  Identities=21%  Similarity=0.228  Sum_probs=65.8

Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHH
Q 031970            9 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL   88 (150)
Q Consensus         9 ~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~   88 (150)
                      |..+++.+++++|++++|+|++++....      ...+.....+.|+++|+||+|+.....           .......+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~------~~~l~~~~~~~~~ilV~NK~Dl~~~~~-----------~~~~~~~~   86 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGSL------IPRLRLFGGNNPVILVGNKIDLLPKDK-----------NLVRIKNW   86 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCcc------chhHHHhcCCCcEEEEEEchhcCCCCC-----------CHHHHHHH
Confidence            4567778999999999999999865221      112222224689999999999865322           23333333


Q ss_pred             H-----HHcCC--cEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           89 R-----KQIGA--SYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        89 ~-----~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      .     +..+.  .+++++||+++.|++++++.+...+.
T Consensus        87 ~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          87 LRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             HHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3     22222  36899999999999999999988763

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.16  E-value=5.5e-11  Score=79.75  Aligned_cols=97  Identities=21%  Similarity=0.218  Sum_probs=72.8

Q ss_pred             CCCC----cccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCC
Q 031970            2 NVIG----QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         2 Dt~G----~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      ||||    ...|..-.-....+||.+++|.|.+++.+..-  +.+...+     +.|+|-|.||+|+.....        
T Consensus        42 DTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p--P~fa~~f-----~~pvIGVITK~Dl~~~~~--------  106 (143)
T PF10662_consen   42 DTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP--PGFASMF-----NKPVIGVITKIDLPSDDA--------  106 (143)
T ss_pred             ECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC--chhhccc-----CCCEEEEEECccCccchh--------
Confidence            7887    22333323345569999999999999765443  3333333     479999999999984332        


Q ss_pred             CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHH
Q 031970           78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI  116 (150)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  116 (150)
                         ..+.+.++.+..|+.++|++|+.+++||+++.+.|-
T Consensus       107 ---~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  107 ---NIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             ---hHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence               667888899999998999999999999999998763

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01859 MJ1464 MJ1464

Probab=99.16  E-value=1e-10  Score=79.86  Aligned_cols=95  Identities=15%  Similarity=0.134  Sum_probs=66.3

Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHH
Q 031970            9 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL   88 (150)
Q Consensus         9 ~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~   88 (150)
                      |+.+.+++++++|++|+|+|++++....+  ..+...+..  .+.|+++|+||+|+.+...            ......+
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~------------~~~~~~~   65 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE--LGKKLLIVLNKADLVPKEV------------LEKWKSI   65 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh--CCCcEEEEEEhHHhCCHHH------------HHHHHHH
Confidence            34566778889999999999988754433  123322222  2689999999999854211            1122233


Q ss_pred             HHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           89 RKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        89 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      ....+. +++++||+++.|++++++.+.+.+.
T Consensus        66 ~~~~~~-~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          66 KESEGI-PVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             HHhCCC-cEEEEEccccccHHHHHHHHHHHHh
Confidence            344454 7899999999999999999988775

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.15  E-value=8.1e-11  Score=83.87  Aligned_cols=66  Identities=14%  Similarity=0.235  Sum_probs=53.4

Q ss_pred             CCCCCcccccccccccccCC-cEEEEEEeCCCh-hhHHHHHHHHHHHHh----hhCCCCCEEEEeeCCCcccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGA-DVFVLAFSLVSR-ASYENVLKKWIPELQ----HYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~a-d~~i~v~d~~~~-~s~~~~~~~~~~~i~----~~~~~~piilv~nK~D~~~~   67 (150)
                      |||||++++...+..+++++ +++|+|+|+++. .++..+ ..|+..+.    ...+++|+++++||.|+...
T Consensus        53 ~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~-~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          53 VDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDV-AEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             EECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHH-HHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            89999999998888899999 999999999997 677776 44443332    12257999999999998754

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.14  E-value=2.7e-10  Score=88.33  Aligned_cols=100  Identities=16%  Similarity=0.181  Sum_probs=73.8

Q ss_pred             CCCCccccc-----c----cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            2 NVIGQEDYN-----R----LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         2 Dt~G~e~~~-----~----l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      ||+|.+.-.     .    .....+..||++|||+|.....+-.+  +...+.+++  .++|+++|+||+|-...     
T Consensus        57 DTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D--~~ia~~Lr~--~~kpviLvvNK~D~~~~-----  127 (444)
T COG1160          57 DTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPAD--EEIAKILRR--SKKPVILVVNKIDNLKA-----  127 (444)
T ss_pred             ECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHh--cCCCEEEEEEcccCchh-----
Confidence            889977433     1    12347889999999999998666665  355555553  36999999999995522     


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                                +....-.-.+|+..++.+||.+|.|+.++.+.++..+.
T Consensus       128 ----------e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         128 ----------EELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             ----------hhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence                      22222334456668999999999999999999999985

>PRK12289 GTPase RsgA; Reviewed

Probab=99.13  E-value=4.6e-10  Score=86.03  Aligned_cols=95  Identities=19%  Similarity=0.216  Sum_probs=70.3

Q ss_pred             ccccccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHH
Q 031970            9 YNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE   87 (150)
Q Consensus         9 ~~~l~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~   87 (150)
                      -+.+.+.++.++|.+++|+|+.++. +...+ ..|+..+..  .++|+++|+||+|+.+..            .......
T Consensus        79 ~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~--~~ip~ILVlNK~DLv~~~------------~~~~~~~  143 (352)
T PRK12289         79 KTELDRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAES--TGLEIVLCLNKADLVSPT------------EQQQWQD  143 (352)
T ss_pred             ccceechhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEEchhcCChH------------HHHHHHH
Confidence            3445566899999999999999876 44444 777765532  479999999999986432            1123334


Q ss_pred             HHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           88 LRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        88 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      ....++. +++++||+++.|++++++.+...+
T Consensus       144 ~~~~~g~-~v~~iSA~tg~GI~eL~~~L~~ki  174 (352)
T PRK12289        144 RLQQWGY-QPLFISVETGIGLEALLEQLRNKI  174 (352)
T ss_pred             HHHhcCC-eEEEEEcCCCCCHHHHhhhhccce
Confidence            4456777 899999999999999999886543

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.13  E-value=2.8e-10  Score=88.26  Aligned_cols=108  Identities=19%  Similarity=0.211  Sum_probs=79.9

Q ss_pred             CCCCc----------cccccccc-ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc
Q 031970            2 NVIGQ----------EDYNRLRP-LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY   70 (150)
Q Consensus         2 Dt~G~----------e~~~~l~~-~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~   70 (150)
                      ||||.          |.|+..+. ..+..||++++|.|++.+.+-++.  .+...+.+.  +.++++|.||+|+.+....
T Consensus       232 DTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~~~--g~~~vIvvNKWDl~~~~~~  307 (444)
T COG1160         232 DTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL--RIAGLIEEA--GRGIVIVVNKWDLVEEDEA  307 (444)
T ss_pred             ECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH--HHHHHHHHc--CCCeEEEEEccccCCchhh
Confidence            88884          44544433 367789999999999999998885  677666654  7899999999999875321


Q ss_pred             ccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           71 LADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                            .......++.......++.+.+++||+++.+++++|+.+....
T Consensus       308 ------~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~  350 (444)
T COG1160         308 ------TMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIY  350 (444)
T ss_pred             ------HHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHH
Confidence                  0011223444555556778999999999999999999887655

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.11  E-value=5.3e-10  Score=93.25  Aligned_cols=101  Identities=15%  Similarity=0.177  Sum_probs=76.4

Q ss_pred             CCCCCccccccccc----------ccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccc
Q 031970            1 MNVIGQEDYNRLRP----------LSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK   68 (150)
Q Consensus         1 wDt~G~e~~~~l~~----------~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~   68 (150)
                      |||||+.++.....          .++  ..+|++++|+|.++.+...    .|...+.+.  +.|+++|+||+|+.+..
T Consensus        55 vDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l----~l~~ql~e~--giPvIvVlNK~Dl~~~~  128 (772)
T PRK09554         55 VDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQ  128 (772)
T ss_pred             EECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhH----HHHHHHHHc--CCCEEEEEEchhhhhcc
Confidence            79999988765322          233  3799999999999865432    244444443  69999999999986543


Q ss_pred             ccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           69 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      .           .......+.+.+++ +++++||+++.|++++.+.+....
T Consensus       129 ~-----------i~id~~~L~~~LG~-pVvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        129 N-----------IRIDIDALSARLGC-PVIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             C-----------cHHHHHHHHHHhCC-CEEEEEeecCCCHHHHHHHHHHhh
Confidence            3           34566777888897 999999999999999999988764

>COG1159 Era GTPase [General function prediction only]

Probab=99.11  E-value=4.4e-10  Score=83.04  Aligned_cols=108  Identities=15%  Similarity=0.159  Sum_probs=79.8

Q ss_pred             CCCCccccc--------ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccC
Q 031970            2 NVIGQEDYN--------RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD   73 (150)
Q Consensus         2 Dt~G~e~~~--------~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~   73 (150)
                      ||||-.+=.        ......+.++|+++||.|+++...-.+  +..++.++.  .+.|++++.||+|..+....   
T Consensus        60 DTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~--~~~pvil~iNKID~~~~~~~---  132 (298)
T COG1159          60 DTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGD--EFILEQLKK--TKTPVILVVNKIDKVKPKTV---  132 (298)
T ss_pred             eCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccH--HHHHHHHhh--cCCCeEEEEEccccCCcHHH---
Confidence            999954422        223457889999999999998655543  355666655  35899999999998765421   


Q ss_pred             CCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           74 HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                             .......+........++++||+++.|++.+.+.+..++.+.+
T Consensus       133 -------l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~  175 (298)
T COG1159         133 -------LLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGP  175 (298)
T ss_pred             -------HHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCC
Confidence                   2344455555666678999999999999999999999997643

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.11  E-value=1.9e-10  Score=89.65  Aligned_cols=95  Identities=18%  Similarity=0.196  Sum_probs=62.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..........+|++++|+|+++....+.  .+.+..+...  ++|.+ +++||+|+.+....       ..
T Consensus        80 iDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt--~e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~-------~~  148 (394)
T TIGR00485        80 VDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEEL-------LE  148 (394)
T ss_pred             EECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEEecccCCHHHH-------HH
Confidence            7999999987655556678899999999998433332  1222233322  57765 68999998753211       00


Q ss_pred             cCHHHHHHHHHHcCC----cEEEEeccCCCC
Q 031970           80 VTTAQGEELRKQIGA----SYYIECSSKTQQ  106 (150)
Q Consensus        80 v~~~~~~~~~~~~~~----~~~~~~Sa~~~~  106 (150)
                      ...+++..+++.++.    .+++++||.++.
T Consensus       149 ~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       149 LVEMEVRELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence            123456677777763    489999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.09  E-value=7.4e-10  Score=82.89  Aligned_cols=86  Identities=19%  Similarity=0.180  Sum_probs=67.0

Q ss_pred             cccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCC
Q 031970           16 SYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA   94 (150)
Q Consensus        16 ~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   94 (150)
                      .+.++|++++|+|++++. ++..+ +.|+..+..  .++|+++|+||+|+....            ............+.
T Consensus        75 i~anvD~vllV~d~~~p~~s~~~l-dr~L~~~~~--~~ip~iIVlNK~DL~~~~------------~~~~~~~~~~~~g~  139 (287)
T cd01854          75 IAANVDQLVIVVSLNEPFFNPRLL-DRYLVAAEA--AGIEPVIVLTKADLLDDE------------EEELELVEALALGY  139 (287)
T ss_pred             EEEeCCEEEEEEEcCCCCCCHHHH-HHHHHHHHH--cCCCEEEEEEHHHCCChH------------HHHHHHHHHHhCCC
Confidence            388999999999999988 77776 888876654  379999999999986531            11222333445676


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHH
Q 031970           95 SYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        95 ~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                       +++++||+++.|+++++..+..
T Consensus       140 -~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         140 -PVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             -eEEEEECCCCccHHHHHhhhcc
Confidence             8999999999999999988764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.08  E-value=3.7e-10  Score=88.00  Aligned_cols=109  Identities=17%  Similarity=0.194  Sum_probs=74.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      +||||+++|.......+..+|++++|+|+.+....+.  .+++..+..  .++|.+ ++.||+|+.+....       ..
T Consensus        80 iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt--~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~-------~~  148 (396)
T PRK12735         80 VDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKCDMVDDEEL-------LE  148 (396)
T ss_pred             EECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhH--HHHHHHHHH--cCCCeEEEEEEecCCcchHHH-------HH
Confidence            6999999987766677889999999999987543332  233333433  257865 57999998743210       01


Q ss_pred             cCHHHHHHHHHHcCC----cEEEEeccCCCC----------CHHHHHHHHHHHHh
Q 031970           80 VTTAQGEELRKQIGA----SYYIECSSKTQQ----------NVKAVFDAAIKVVI  120 (150)
Q Consensus        80 v~~~~~~~~~~~~~~----~~~~~~Sa~~~~----------~i~~~~~~l~~~~~  120 (150)
                      ....++..+.+.++.    .+++++||.++.          ++.++++.|...+.
T Consensus       149 ~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        149 LVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            123456666666653    479999999984          67788888877654

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.07  E-value=4.5e-10  Score=86.52  Aligned_cols=96  Identities=24%  Similarity=0.352  Sum_probs=71.3

Q ss_pred             cccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHH
Q 031970            6 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG   85 (150)
Q Consensus         6 ~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~   85 (150)
                      .++|..+...+++.++++++|+|+.+..      ..|.+.+.+...+.|+++|+||+|+.....           ..+..
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~------~s~~~~l~~~~~~~piilV~NK~DLl~k~~-----------~~~~~  112 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE------GSLIPELKRFVGGNPVLLVGNKIDLLPKSV-----------NLSKI  112 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC------CCccHHHHHHhCCCCEEEEEEchhhCCCCC-----------CHHHH
Confidence            5678888888999999999999997754      234444444445789999999999975321           22333


Q ss_pred             H----HHHHHcCCc--EEEEeccCCCCCHHHHHHHHHHH
Q 031970           86 E----ELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        86 ~----~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                      .    ++++..++.  .++++||+++.|++++++.+.+.
T Consensus       113 ~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       113 KEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            3    446666652  58999999999999999999764

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.05  E-value=9.7e-10  Score=88.35  Aligned_cols=62  Identities=15%  Similarity=0.212  Sum_probs=48.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE   66 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~   66 (150)
                      |||||+++|......+++.+|++|+|+|+++......  ..+......  .++|+++++||+|+..
T Consensus        84 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~--~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         84 LDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT--RKLMEVCRL--RDTPIFTFINKLDRDG  145 (526)
T ss_pred             EECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHH--HHHHHHHHh--cCCCEEEEEECCcccc
Confidence            8999999999877778999999999999998643332  344444433  3799999999999864

>PRK09866 hypothetical protein; Provisional

Probab=99.04  E-value=1.6e-09  Score=87.69  Aligned_cols=107  Identities=11%  Similarity=0.071  Sum_probs=73.4

Q ss_pred             CCCCcccc-----cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCC
Q 031970            2 NVIGQEDY-----NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG   76 (150)
Q Consensus         2 Dt~G~e~~-----~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~   76 (150)
                      ||||...-     +......+.+||++++|.|.++..+..+  ....+.+.+.....|+++|.||+|+......      
T Consensus       236 DTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~K~~PVILVVNKIDl~dreed------  307 (741)
T PRK09866        236 DTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVGQSVPLYVLVNKFDQQDRNSD------  307 (741)
T ss_pred             ECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcCCCCCEEEEEEcccCCCcccc------
Confidence            99997642     2223347899999999999998666555  3456666654334699999999998642210      


Q ss_pred             CCccCHHHHHHHHH----H--cCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           77 LVPVTTAQGEELRK----Q--IGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        77 ~~~v~~~~~~~~~~----~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                          ..+.+..+..    .  .....++++||+.|.|++++++.+...-.
T Consensus       308 ----dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~~  353 (741)
T PRK09866        308 ----DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNGK  353 (741)
T ss_pred             ----hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCCC
Confidence                2333333322    1  22457999999999999999999988544

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.04  E-value=1.9e-10  Score=91.20  Aligned_cols=99  Identities=28%  Similarity=0.455  Sum_probs=79.0

Q ss_pred             cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccccccccCCCCCCccCHH-HHHHHH
Q 031970           14 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA-QGEELR   89 (150)
Q Consensus        14 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~-~~~~~~   89 (150)
                      ..-++.||++.++|+.+++.+++.+...|++.+++..   -++||||||||+|.......          ..+ ...-+.
T Consensus        74 ~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~----------s~e~~~~pim  143 (625)
T KOG1707|consen   74 RKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN----------SDEVNTLPIM  143 (625)
T ss_pred             HHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc----------chhHHHHHHH
Confidence            3457889999999999999999999999999999988   57999999999998765431          111 233333


Q ss_pred             HHc-CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           90 KQI-GASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        90 ~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ..+ .+...++|||++..++.++|+..-+.++.+
T Consensus       144 ~~f~EiEtciecSA~~~~n~~e~fYyaqKaVihP  177 (625)
T KOG1707|consen  144 IAFAEIETCIECSALTLANVSELFYYAQKAVIHP  177 (625)
T ss_pred             HHhHHHHHHHhhhhhhhhhhHhhhhhhhheeecc
Confidence            333 244679999999999999999998888765

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.03  E-value=5.7e-10  Score=76.19  Aligned_cols=97  Identities=21%  Similarity=0.269  Sum_probs=64.8

Q ss_pred             CCCCCccccccc------ccccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQEDYNRL------RPLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~~~~l------~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      .|+||.-.....      ...++  ...|++|+|.|+++.+.-..    ...++.+.  +.|+++|.||+|......   
T Consensus        52 vDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~----l~~ql~e~--g~P~vvvlN~~D~a~~~g---  122 (156)
T PF02421_consen   52 VDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNLY----LTLQLLEL--GIPVVVVLNKMDEAERKG---  122 (156)
T ss_dssp             EE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHH----HHHHHHHT--TSSEEEEEETHHHHHHTT---
T ss_pred             EECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHH----HHHHHHHc--CCCEEEEEeCHHHHHHcC---
Confidence            388885433332      23344  57999999999998653332    33344443  699999999999877654   


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHH
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA  115 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  115 (150)
                              .......+.+.+++ |++++||+++.|++++++.+
T Consensus       123 --------~~id~~~Ls~~Lg~-pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  123 --------IEIDAEKLSERLGV-PVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             --------EEE-HHHHHHHHTS--EEEEBTTTTBTHHHHHHHH
T ss_pred             --------CEECHHHHHHHhCC-CEEEEEeCCCcCHHHHHhhC
Confidence                    22245667777897 99999999999999999865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.03  E-value=1.7e-09  Score=78.68  Aligned_cols=49  Identities=18%  Similarity=0.213  Sum_probs=38.2

Q ss_pred             CCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           53 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        53 ~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      +|+++|+||+|+.+.               ++...++..   .+++++||+++.|++++|+.+.+.+
T Consensus       177 ~p~iiV~NK~Dl~~~---------------~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         177 IPCLYVYNKIDLISI---------------EELDLLARQ---PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             eeEEEEEECccCCCH---------------HHHHHHhcC---CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence            699999999998532               333344443   2689999999999999999998765

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK13351 elongation factor G; Reviewed

Probab=99.03  E-value=1.2e-09  Score=90.54  Aligned_cols=63  Identities=21%  Similarity=0.295  Sum_probs=52.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      |||||+.+|...+..+++.+|++++|+|+++....+.. ..| ..+..  .++|+++++||+|+...
T Consensus        78 iDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~--~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         78 IDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADR--YGIPRLIFINKMDRVGA  140 (687)
T ss_pred             EECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHh--cCCCEEEEEECCCCCCC
Confidence            89999999999889999999999999999998777654 444 33433  26899999999998753

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.03  E-value=1.8e-09  Score=73.33  Aligned_cols=106  Identities=19%  Similarity=0.172  Sum_probs=67.4

Q ss_pred             CCCCCc----------ccccccccccccC---CcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970            1 MNVIGQ----------EDYNRLRPLSYRG---ADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLRE   66 (150)
Q Consensus         1 wDt~G~----------e~~~~l~~~~~~~---ad~~i~v~d~~~~~s~~~~-~~~~~~~i~~~~~~~piilv~nK~D~~~   66 (150)
                      |||+|.          +.+..+...|+..   .+++++++|.++..+.... +..|+...     +.|+++|+||+|+..
T Consensus        50 ~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~~  124 (170)
T cd01876          50 VDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADKLK  124 (170)
T ss_pred             ecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhcCC
Confidence            799993          3455555556654   5688999999876433221 13444332     489999999999854


Q ss_pred             ccccccCCCCCCccCHHHHHHHHH-HcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           67 DKHYLADHPGLVPVTTAQGEELRK-QIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        67 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      ....        ...........+ .....+++++||+++.++.++++.|.+.+
T Consensus       125 ~~~~--------~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         125 KSEL--------AKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKWL  170 (170)
T ss_pred             hHHH--------HHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence            3210        001122223332 23335899999999999999999998753

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.02  E-value=1.5e-09  Score=85.93  Aligned_cols=111  Identities=11%  Similarity=0.090  Sum_probs=73.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      .||||+++|....-..+..+|++++|+|++.. ...+.. +.+ ..+. ...-.|+|+|.||+|+.+....        .
T Consensus       122 IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl-~i~~-~lgi~~iIVvlNKiDlv~~~~~--------~  190 (460)
T PTZ00327        122 VDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHL-AAVE-IMKLKHIIILQNKIDLVKEAQA--------Q  190 (460)
T ss_pred             eeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHH-HHHH-HcCCCcEEEEEecccccCHHHH--------H
Confidence            49999999987767778899999999999974 222221 222 2222 1222468999999998753210        0


Q ss_pred             cCHHHHHHHHHHc--CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           80 VTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        80 v~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      -..+++..+.+..  ...+++++||++|.|++.+++.|...+..+
T Consensus       191 ~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~  235 (460)
T PTZ00327        191 DQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP  235 (460)
T ss_pred             HHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence            0123333333321  234899999999999999999999866543

>PRK12288 GTPase RsgA; Reviewed

Probab=99.02  E-value=3e-09  Score=81.52  Aligned_cols=89  Identities=17%  Similarity=0.258  Sum_probs=67.2

Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031970           18 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY   97 (150)
Q Consensus        18 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   97 (150)
                      .++|.+++|++.+...++..+ +.|+..+..  .++|+++|+||+|+......         ..........+..+. ++
T Consensus       119 ANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~--~~i~~VIVlNK~DL~~~~~~---------~~~~~~~~~y~~~g~-~v  185 (347)
T PRK12288        119 ANIDQIVIVSAVLPELSLNII-DRYLVACET--LGIEPLIVLNKIDLLDDEGR---------AFVNEQLDIYRNIGY-RV  185 (347)
T ss_pred             EEccEEEEEEeCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEECccCCCcHHH---------HHHHHHHHHHHhCCC-eE
Confidence            569999999999988888887 899775543  47999999999999753210         012233334456676 89


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 031970           98 IECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        98 ~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      +++||+++.|++++++.+...+
T Consensus       186 ~~vSA~tg~GideL~~~L~~ki  207 (347)
T PRK12288        186 LMVSSHTGEGLEELEAALTGRI  207 (347)
T ss_pred             EEEeCCCCcCHHHHHHHHhhCC
Confidence            9999999999999999886543

>PRK13768 GTPase; Provisional

Probab=99.00  E-value=1.5e-09  Score=79.83  Aligned_cols=119  Identities=16%  Similarity=0.127  Sum_probs=69.8

Q ss_pred             CCCCCccccc---cccccccc---C--CcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCEEEEeeCCCcccccccc
Q 031970            1 MNVIGQEDYN---RLRPLSYR---G--ADVFVLAFSLVSRASYENVL-KKWIPELQHYSPGVPVVLVGTKLDLREDKHYL   71 (150)
Q Consensus         1 wDt~G~e~~~---~l~~~~~~---~--ad~~i~v~d~~~~~s~~~~~-~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~   71 (150)
                      |||||+.++.   .+++.+++   .  ++++++|+|+....+..+.. ..|+........+.|+++|+||+|+.+.....
T Consensus       102 ~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~  181 (253)
T PRK13768        102 VDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELE  181 (253)
T ss_pred             EeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHH
Confidence            7999988743   33333333   2  89999999997544332221 23443333223479999999999987643210


Q ss_pred             c--CCCC---------------CCccCHHHHHHHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           72 A--DHPG---------------LVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        72 ~--~~~~---------------~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      .  +...               +... ...+....+..+ ..+++++||+++.|++++.+.+.+.+.
T Consensus       182 ~~~~~l~~~~~~~~~l~~~~~~~~~~-~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        182 RILKWLEDPEYLLEELKLEKGLQGLL-SLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             HHHHHHhCHHHHHHHHhcccchHHHH-HHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            0  0000               0000 001111122333 237899999999999999999988774

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.97  E-value=1.2e-09  Score=85.50  Aligned_cols=101  Identities=20%  Similarity=0.128  Sum_probs=65.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|.......+..+|++++|+|+.....-+.. +.| ..+... ...+++++.||+|+......      ....
T Consensus        85 iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~-~~~~~~-~~~~iivviNK~D~~~~~~~------~~~~  155 (406)
T TIGR02034        85 ADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHS-YIASLL-GIRHVVLAVNKMDLVDYDEE------VFEN  155 (406)
T ss_pred             EeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHH-HHHHHc-CCCcEEEEEEecccccchHH------HHHH
Confidence            69999999977666788999999999999875433321 122 122221 23468999999998642210      0000


Q ss_pred             CHHHHHHHHHHcCC--cEEEEeccCCCCCHHH
Q 031970           81 TTAQGEELRKQIGA--SYYIECSSKTQQNVKA  110 (150)
Q Consensus        81 ~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~  110 (150)
                      ..++...+.+.++.  .+++++||++|.|+.+
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            12333344455443  3699999999999886

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01858 NGP_1 NGP-1

Probab=98.94  E-value=4.6e-09  Score=71.80  Aligned_cols=90  Identities=14%  Similarity=0.053  Sum_probs=60.2

Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 031970           16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS   95 (150)
Q Consensus        16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   95 (150)
                      .+.+||++++|.|+.++....+  ..+.+.+.....+.|+++|.||+|+.....           .......+.+.+.. 
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~-----------~~~~~~~~~~~~~~-   70 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV-----------TARWVKILSKEYPT-   70 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH-----------HHHHHHHHhcCCcE-
Confidence            5779999999999998753322  233334433334689999999999864321           12223333333332 


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHH
Q 031970           96 YYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        96 ~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      ..+.+||+.+.|++++++.+...+
T Consensus        71 ~~~~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          71 IAFHASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             EEEEeeccccccHHHHHHHHHHHH
Confidence            357899999999999999997654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK12740 elongation factor G; Reviewed

Probab=98.92  E-value=5e-09  Score=86.66  Aligned_cols=62  Identities=19%  Similarity=0.282  Sum_probs=50.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE   66 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~   66 (150)
                      |||||+.+|...+..+++.+|++++|+|+++....... ..| ..+..  .++|+++|+||+|+..
T Consensus        65 iDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~-~~~-~~~~~--~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         65 IDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTE-TVW-RQAEK--YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             EECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHH-HHH-HHHHH--cCCCEEEEEECCCCCC
Confidence            79999999988888899999999999999987766654 333 33333  2689999999999864

>PLN00043 elongation factor 1-alpha; Provisional

Probab=98.91  E-value=2.4e-09  Score=84.65  Aligned_cols=102  Identities=16%  Similarity=0.151  Sum_probs=67.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHH-------HHHHHHHHHHhhhCCCCC-EEEEeeCCCccccccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE-------NVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~-------~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~   72 (150)
                      .|||||++|......++..+|++|+|+|+++. .|+       .. .+.+.....  .++| +|+++||+|+...... .
T Consensus        90 iDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT-~eh~~~~~~--~gi~~iIV~vNKmD~~~~~~~-~  164 (447)
T PLN00043         90 IDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQT-REHALLAFT--LGVKQMICCCNKMDATTPKYS-K  164 (447)
T ss_pred             EECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchH-HHHHHHHHH--cCCCcEEEEEEcccCCchhhh-H
Confidence            39999999999888899999999999999973 221       22 222222222  2564 7889999997621100 0


Q ss_pred             CCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHH
Q 031970           73 DHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA  110 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  110 (150)
                         ..-.-..+++..+++..++    .+++++||.+|.|+.+
T Consensus       165 ---~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        165 ---ARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             ---HHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence               0000134567777777663    3799999999999853

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.90  E-value=1.9e-08  Score=79.80  Aligned_cols=100  Identities=19%  Similarity=0.289  Sum_probs=74.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      .|||||.-|+.|+...-.-+|++++|....|.   .+.+.+     ...+.  .++|+|+..||+|.++...        
T Consensus       206 LDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaI-----khAk~--A~VpiVvAinKiDkp~a~p--------  270 (683)
T KOG1145|consen  206 LDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAI-----KHAKS--ANVPIVVAINKIDKPGANP--------  270 (683)
T ss_pred             ecCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHH-----HHHHh--cCCCEEEEEeccCCCCCCH--------
Confidence            49999999999999999999999999999984   444443     11111  3799999999999876532        


Q ss_pred             CccCHHHHHHHH------HHcCC-cEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           78 VPVTTAQGEELR------KQIGA-SYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        78 ~~v~~~~~~~~~------~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                          ....+++.      ..+|. .+++++||++|.|++.+-+.++-+.
T Consensus       271 ----ekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  271 ----EKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLA  315 (683)
T ss_pred             ----HHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHH
Confidence                22222222      22332 5789999999999999999887655

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.89  E-value=1.8e-09  Score=85.94  Aligned_cols=102  Identities=14%  Similarity=0.091  Sum_probs=63.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|.......+..+|++++|+|++....-+.. +.+. .+... ...|+|++.||+|+......      ....
T Consensus       112 iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~-~~~~-l~~~l-g~~~iIvvvNKiD~~~~~~~------~~~~  182 (474)
T PRK05124        112 ADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR-RHSF-IATLL-GIKHLVVAVNKMDLVDYSEE------VFER  182 (474)
T ss_pred             EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch-HHHH-HHHHh-CCCceEEEEEeeccccchhH------HHHH
Confidence            69999999976555567999999999999875432211 1111 11111 12478999999998742210      0000


Q ss_pred             CHHHHHHHHHHcC---CcEEEEeccCCCCCHHHH
Q 031970           81 TTAQGEELRKQIG---ASYYIECSSKTQQNVKAV  111 (150)
Q Consensus        81 ~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~  111 (150)
                      ...++..+....+   ..+++++||+++.|+.++
T Consensus       183 i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        183 IREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            1123333334333   248999999999999864

>CHL00071 tufA elongation factor Tu

Probab=98.89  E-value=5.2e-09  Score=81.98  Aligned_cols=95  Identities=19%  Similarity=0.169  Sum_probs=65.8

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCCCcc
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      ||||+.+|.......+..+|++++|+|+.....-+.  .+.+..+...  ++| +|++.||+|+.+....       .+.
T Consensus        81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt--~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~-------~~~  149 (409)
T CHL00071         81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT--KEHILLAKQV--GVPNIVVFLNKEDQVDDEEL-------LEL  149 (409)
T ss_pred             ECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEEccCCCCHHHH-------HHH
Confidence            999999987766777889999999999987544333  2333344332  678 7789999999753221       011


Q ss_pred             CHHHHHHHHHHcCC----cEEEEeccCCCCC
Q 031970           81 TTAQGEELRKQIGA----SYYIECSSKTQQN  107 (150)
Q Consensus        81 ~~~~~~~~~~~~~~----~~~~~~Sa~~~~~  107 (150)
                      ...++..+.+..++    .+++++||.++.+
T Consensus       150 ~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        150 VELEVRELLSKYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             HHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence            23456666666553    4899999999864

>cd04169 RF3 RF3 subfamily

Probab=98.88  E-value=4.2e-09  Score=78.09  Aligned_cols=63  Identities=17%  Similarity=0.278  Sum_probs=48.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      |||||+++|......+++.+|++|+|+|+++......  ..+......  .++|+++++||+|+...
T Consensus        76 iDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~--~~~P~iivvNK~D~~~a  138 (267)
T cd04169          76 LDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRL--RGIPIITFINKLDREGR  138 (267)
T ss_pred             EECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHh--cCCCEEEEEECCccCCC
Confidence            8999999998877778999999999999988644332  344444333  36899999999997654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK00049 elongation factor Tu; Reviewed

Probab=98.87  E-value=9.1e-09  Score=80.27  Aligned_cols=108  Identities=18%  Similarity=0.193  Sum_probs=72.1

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeeCCCcccccccccCCCCCCcc
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-lv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      ||||+++|.......+..+|++++|+|+.....-+.  .+++..+...  ++|.+ ++.||+|+.+....       ...
T Consensus        81 DtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt--~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~-------~~~  149 (396)
T PRK00049         81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEEL-------LEL  149 (396)
T ss_pred             ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHH--HHHHHHHHHc--CCCEEEEEEeecCCcchHHH-------HHH
Confidence            999999987766777899999999999987644433  2344444433  58976 58999998742210       001


Q ss_pred             CHHHHHHHHHHcCC----cEEEEeccCCCC----------CHHHHHHHHHHHHh
Q 031970           81 TTAQGEELRKQIGA----SYYIECSSKTQQ----------NVKAVFDAAIKVVI  120 (150)
Q Consensus        81 ~~~~~~~~~~~~~~----~~~~~~Sa~~~~----------~i~~~~~~l~~~~~  120 (150)
                      ...++..+....++    .+++++||+++.          ++..+++.|...+.
T Consensus       150 ~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        150 VEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             HHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence            22344555555443    489999999875          46677777776544

>TIGR00503 prfC peptide chain release factor 3

Probab=98.85  E-value=1.7e-08  Score=81.31  Aligned_cols=62  Identities=15%  Similarity=0.209  Sum_probs=47.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE   66 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~   66 (150)
                      |||||+.+|......+++.+|++|+|+|+++...-..  ..+.+....  .++|+++++||+|+..
T Consensus        85 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~--~~~PiivviNKiD~~~  146 (527)
T TIGR00503        85 LDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRT--RKLMEVTRL--RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             EECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHh--cCCCEEEEEECccccC
Confidence            7999999998877778999999999999987533221  344443333  3689999999999853

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.82  E-value=1.5e-08  Score=75.46  Aligned_cols=90  Identities=20%  Similarity=0.117  Sum_probs=63.1

Q ss_pred             ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHc
Q 031970           13 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI   92 (150)
Q Consensus        13 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~   92 (150)
                      ....+..||++++|.|+.++.+.+..  .+.+.+    .+.|+|+|.||+|+.+..            .......+.+..
T Consensus        15 ~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~------------~~~~~~~~~~~~   76 (276)
T TIGR03596        15 IKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPA------------VTKQWLKYFEEK   76 (276)
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHH------------HHHHHHHHHHHc
Confidence            34578899999999999887665432  233333    268999999999985421            112222233334


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           93 GASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        93 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +. +++.+||+++.|+.++.+.+.+.+.+
T Consensus        77 ~~-~vi~iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        77 GI-KALAINAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             CC-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence            43 78999999999999999999887754

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.82  E-value=1.4e-08  Score=68.31  Aligned_cols=76  Identities=17%  Similarity=0.203  Sum_probs=53.4

Q ss_pred             cccCCcEEEEEEeCCChhhHHH-HHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCC
Q 031970           16 SYRGADVFVLAFSLVSRASYEN-VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA   94 (150)
Q Consensus        16 ~~~~ad~~i~v~d~~~~~s~~~-~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   94 (150)
                      .+.++|++++|+|+.++.+..+ .+..|+...   ..++|+++|+||+|+....            .........+..+.
T Consensus         8 ~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~~~------------~~~~~~~~~~~~~~   72 (141)
T cd01857           8 VVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLTEE------------QRKAWAEYFKKEGI   72 (141)
T ss_pred             HHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCCHH------------HHHHHHHHHHhcCC
Confidence            5778999999999999876553 113444332   2578999999999986432            22344455666665


Q ss_pred             cEEEEeccCCCCC
Q 031970           95 SYYIECSSKTQQN  107 (150)
Q Consensus        95 ~~~~~~Sa~~~~~  107 (150)
                       +++++||+++.+
T Consensus        73 -~ii~iSa~~~~~   84 (141)
T cd01857          73 -VVVFFSALKENA   84 (141)
T ss_pred             -eEEEEEecCCCc
Confidence             899999998764

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.82  E-value=5.9e-09  Score=77.41  Aligned_cols=62  Identities=21%  Similarity=0.235  Sum_probs=49.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE   66 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~   66 (150)
                      |||||+.+|...+..+++.+|++|+|+|+.+...-+.  ..+...+...  ++|++++.||+|+..
T Consensus        69 iDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~~--~~p~ivviNK~D~~~  130 (270)
T cd01886          69 IDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADRY--NVPRIAFVNKMDRTG  130 (270)
T ss_pred             EECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECCCCCC
Confidence            7999999998888889999999999999988654333  2334444432  689999999999875

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PLN03126 Elongation factor Tu; Provisional

Probab=98.79  E-value=1.6e-08  Score=80.47  Aligned_cols=96  Identities=20%  Similarity=0.156  Sum_probs=65.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|.......+..+|++++|+|+.+...-+.  .+++..+...  ++| +|++.||+|+.+....       .+
T Consensus       149 iDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt--~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~-------~~  217 (478)
T PLN03126        149 VDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQV--GVPNMVVFLNKQDQVDDEEL-------LE  217 (478)
T ss_pred             EECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEecccccCHHHH-------HH
Confidence            6999999998777777889999999999997654443  2344344433  678 7889999998753210       01


Q ss_pred             cCHHHHHHHHHHcCC----cEEEEeccCCCCC
Q 031970           80 VTTAQGEELRKQIGA----SYYIECSSKTQQN  107 (150)
Q Consensus        80 v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~  107 (150)
                      ....++..+.+..++    .+++++||.++.+
T Consensus       218 ~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        218 LVELEVRELLSSYEFPGDDIPIISGSALLALE  249 (478)
T ss_pred             HHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence            123355566665432    4799999988743

>cd00066 G-alpha G protein alpha subunit

Probab=98.79  E-value=5.4e-08  Score=73.85  Aligned_cols=122  Identities=16%  Similarity=0.185  Sum_probs=78.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKH   69 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~----------~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~   69 (150)
                      ||++||...+..|..++.+++++|+|+|+++-          ..+.+.+..+...+.... .++|++|++||.|+.....
T Consensus       166 ~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki  245 (317)
T cd00066         166 FDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKI  245 (317)
T ss_pred             ECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhh
Confidence            89999999999999999999999999999973          345544333333333222 5799999999999765432


Q ss_pred             c---cc---CCCCCCccCHHHHHHHHHH-----c----CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           70 Y---LA---DHPGLVPVTTAQGEELRKQ-----I----GASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        70 ~---~~---~~~~~~~v~~~~~~~~~~~-----~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      .   ..   .+.....-..+.+..+...     .    .......++|.+..++..+|+.+...++..
T Consensus       246 ~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         246 KKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             cCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence            1   00   1111101122222222211     1    112446789999999999999988887653

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PLN03127 Elongation factor Tu; Provisional

Probab=98.79  E-value=2.7e-08  Score=78.73  Aligned_cols=110  Identities=21%  Similarity=0.203  Sum_probs=69.2

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCCCcc
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      ||||+++|..........+|++++|+|+++...-+.  .+.+..+...  ++| +|++.||+|+.+....       .+.
T Consensus       130 DtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~~--gip~iIvviNKiDlv~~~~~-------~~~  198 (447)
T PLN03127        130 DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVVFLNKVDVVDDEEL-------LEL  198 (447)
T ss_pred             ECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEeeccCCHHHH-------HHH
Confidence            999999987655556778999999999987544333  2333334332  588 5788999998753210       001


Q ss_pred             CHHHHHHHHHHcCC----cEEEEeccC---CCCC-------HHHHHHHHHHHHhCC
Q 031970           81 TTAQGEELRKQIGA----SYYIECSSK---TQQN-------VKAVFDAAIKVVIKP  122 (150)
Q Consensus        81 ~~~~~~~~~~~~~~----~~~~~~Sa~---~~~~-------i~~~~~~l~~~~~~~  122 (150)
                      ...++..+...+++    .+++++||.   ++.|       +.++++.+...+..+
T Consensus       199 i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p  254 (447)
T PLN03127        199 VEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEP  254 (447)
T ss_pred             HHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCC
Confidence            12234444444332    478888876   4444       677777777765533

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.78  E-value=5.7e-08  Score=66.25  Aligned_cols=83  Identities=18%  Similarity=0.088  Sum_probs=56.6

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHH--HHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 031970           21 DVFVLAFSLVSRASYENVLKKWIP--ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI   98 (150)
Q Consensus        21 d~~i~v~d~~~~~s~~~~~~~~~~--~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   98 (150)
                      |++++|+|+.++.+....   ++.  .+.  ..+.|+++|.||+|+.....           .......+....+ ..++
T Consensus         1 Dvvl~VvD~~~p~~~~~~---~i~~~~~~--~~~~p~IiVlNK~Dl~~~~~-----------~~~~~~~~~~~~~-~~ii   63 (155)
T cd01849           1 DVILEVLDARDPLGTRSP---DIERVLIK--EKGKKLILVLNKADLVPKEV-----------LRKWLAYLRHSYP-TIPF   63 (155)
T ss_pred             CEEEEEEeccCCccccCH---HHHHHHHh--cCCCCEEEEEechhcCCHHH-----------HHHHHHHHHhhCC-ceEE
Confidence            689999999998766542   332  222  23689999999999864321           1111223333333 4789


Q ss_pred             EeccCCCCCHHHHHHHHHHHHh
Q 031970           99 ECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        99 ~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      .+||+++.|++++.+.+.+...
T Consensus        64 ~vSa~~~~gi~~L~~~i~~~~~   85 (155)
T cd01849          64 KISATNGQGIEKKESAFTKQTN   85 (155)
T ss_pred             EEeccCCcChhhHHHHHHHHhH
Confidence            9999999999999999877643

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.77  E-value=8.3e-09  Score=84.86  Aligned_cols=101  Identities=18%  Similarity=0.133  Sum_probs=64.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      +||||+++|.......+..+|++++|+|++....-+..  +....+... ...|++++.||+|+.+....      ....
T Consensus       109 iDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~--e~~~~~~~~-~~~~iivvvNK~D~~~~~~~------~~~~  179 (632)
T PRK05506        109 ADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR--RHSFIASLL-GIRHVVLAVNKMDLVDYDQE------VFDE  179 (632)
T ss_pred             EECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH--HHHHHHHHh-CCCeEEEEEEecccccchhH------HHHH
Confidence            69999999876555678899999999999865433221  111122222 23578999999998742110      0000


Q ss_pred             CHHHHHHHHHHcCC--cEEEEeccCCCCCHHH
Q 031970           81 TTAQGEELRKQIGA--SYYIECSSKTQQNVKA  110 (150)
Q Consensus        81 ~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~  110 (150)
                      ...++..+...+++  .+++++||++|.|+.+
T Consensus       180 i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        180 IVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            12333344455554  3589999999999874

>cd01856 YlqF YlqF

Probab=98.76  E-value=4.3e-08  Score=67.96  Aligned_cols=90  Identities=20%  Similarity=0.120  Sum_probs=62.1

Q ss_pred             cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHH
Q 031970           12 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ   91 (150)
Q Consensus        12 l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~   91 (150)
                      .....+++||++++|+|++++.+..+.  .+...+    .+.|+++|.||+|+.+..            ......++.+.
T Consensus        12 ~~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~----~~k~~ilVlNK~Dl~~~~------------~~~~~~~~~~~   73 (171)
T cd01856          12 QIKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL----GNKPRIIVLNKADLADPK------------KTKKWLKYFES   73 (171)
T ss_pred             HHHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh----cCCCEEEEEehhhcCChH------------HHHHHHHHHHh
Confidence            345578899999999999887654332  232222    357999999999985321            11222233333


Q ss_pred             cCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           92 IGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        92 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      .+ ..++.+||+++.|++++...+...+.
T Consensus        74 ~~-~~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          74 KG-EKVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             cC-CeEEEEECCCcccHHHHHHHHHHHHH
Confidence            34 37899999999999999999988764

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.73  E-value=2.7e-08  Score=82.63  Aligned_cols=63  Identities=19%  Similarity=0.180  Sum_probs=50.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      |||||+.+|......+++.+|++++|+|+++....+..  .+...+...  ++|+++++||+|+...
T Consensus        80 iDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        80 IDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE--TVWRQANRY--EVPRIAFVNKMDKTGA  142 (689)
T ss_pred             EECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence            79999999988888899999999999999987666543  333344432  6899999999998753

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.72  E-value=8.3e-08  Score=72.81  Aligned_cols=58  Identities=16%  Similarity=0.210  Sum_probs=41.9

Q ss_pred             CCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHH-HHHHHHhCCC
Q 031970           52 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD-AAIKVVIKPP  123 (150)
Q Consensus        52 ~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~-~l~~~~~~~~  123 (150)
                      .+|+|+|+||.|+....              +....+....+..+++.+||+.+.++.++.+ .+++++.+.+
T Consensus       214 ~KPvI~VlNK~Dl~~~~--------------~~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~  272 (318)
T cd01899         214 SKPMVIAANKADIPDAE--------------NNISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDS  272 (318)
T ss_pred             CCcEEEEEEHHHccChH--------------HHHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCC
Confidence            37999999999975321              1111222344445899999999999999998 5999887643

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=98.71  E-value=5.3e-08  Score=75.99  Aligned_cols=100  Identities=18%  Similarity=0.208  Sum_probs=72.0

Q ss_pred             CCCCccccccccc--------ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccC
Q 031970            2 NVIGQEDYNRLRP--------LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD   73 (150)
Q Consensus         2 Dt~G~e~~~~l~~--------~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~   73 (150)
                      ||||..+-....+        ..+++||.+++|+|.+.+.+-.+.  ..+.   ....+.|+++|.||.|+......   
T Consensus       271 DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~~~~---  342 (454)
T COG0486         271 DTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSKIEL---  342 (454)
T ss_pred             ecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhccccccc---
Confidence            8999877665442        367899999999999997444442  2333   22347999999999999875421   


Q ss_pred             CCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           74 HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                               ...    +..+-.+++.+||+++.|++.+.+.+.+.+...
T Consensus       343 ---------~~~----~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         343 ---------ESE----KLANGDAIISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             ---------chh----hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence                     111    112222689999999999999999999888655

>PRK12739 elongation factor G; Reviewed

Probab=98.69  E-value=9.1e-08  Score=79.53  Aligned_cols=62  Identities=24%  Similarity=0.263  Sum_probs=49.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE   66 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~   66 (150)
                      |||||+.+|......+++.+|++|+|+|+.+....+..  .....+...  ++|+|++.||+|+..
T Consensus        78 iDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~~--~~p~iv~iNK~D~~~  139 (691)
T PRK12739         78 IDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADKY--GVPRIVFVNKMDRIG  139 (691)
T ss_pred             EcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCC
Confidence            69999999988888899999999999999987655543  344444432  689999999999874

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.67  E-value=5.5e-08  Score=76.99  Aligned_cols=101  Identities=15%  Similarity=0.105  Sum_probs=64.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhh---H---HHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccc--cccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRAS---Y---ENVLKKWIPELQHYSPGVP-VVLVGTKLDLRED--KHYL   71 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s---~---~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~--~~~~   71 (150)
                      .||||+++|.......+..+|++++|+|++....   +   ....+.| ..+...  ++| +|++.||.|....  ... 
T Consensus        90 IDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~-~~~~~~--gi~~iiv~vNKmD~~~~~~~~~-  165 (446)
T PTZ00141         90 IDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHA-LLAFTL--GVKQMIVCINKMDDKTVNYSQE-  165 (446)
T ss_pred             EECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHH-HHHHHc--CCCeEEEEEEccccccchhhHH-
Confidence            3999999998877778899999999999987421   0   0110222 222222  566 6799999995321  000 


Q ss_pred             cCCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHH
Q 031970           72 ADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA  110 (150)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  110 (150)
                           .-.....++..+....++    .+++++||.+|.|+.+
T Consensus       166 -----~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        166 -----RYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             -----HHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence                 000133455555555443    4799999999999864

>smart00275 G_alpha G protein alpha subunit

Probab=98.64  E-value=1.5e-07  Score=72.22  Aligned_cols=120  Identities=15%  Similarity=0.205  Sum_probs=77.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDK   68 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~----------~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~   68 (150)
                      ||++||..++..|..++.+++++|+|.|+++-          ..+.+.+..+ +.+-..  ..++|++|++||.|+....
T Consensus       189 ~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f-~~l~~~~~~~~~piil~~NK~D~~~~K  267 (342)
T smart00275      189 FDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLF-ESICNSRWFANTSIILFLNKIDLFEEK  267 (342)
T ss_pred             EecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHH-HHHHcCccccCCcEEEEEecHHhHHHH
Confidence            89999999999999999999999999999972          3455543333 333322  2579999999999986543


Q ss_pred             cc---cc---CCCCCCccCHHHHHHH-----HHHc-----CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           69 HY---LA---DHPGLVPVTTAQGEEL-----RKQI-----GASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        69 ~~---~~---~~~~~~~v~~~~~~~~-----~~~~-----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ..   ..   .+....+ ....+..+     ....     .......++|.+-.++..+|+.+...++..
T Consensus       268 l~~~~l~~~fp~y~g~~-~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~  336 (342)
T smart00275      268 IKKVPLVDYFPDYKGPN-DYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR  336 (342)
T ss_pred             hCCCchhccCCCCCCCC-CHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence            21   00   0111111 22222222     1111     112456788999999999999988887753

Subunit of G proteins that contains the guanine nucleotide binding site

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.64  E-value=2.5e-07  Score=65.54  Aligned_cols=115  Identities=14%  Similarity=0.083  Sum_probs=67.7

Q ss_pred             CCCCCcccccc-----cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCC
Q 031970            1 MNVIGQEDYNR-----LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP   75 (150)
Q Consensus         1 wDt~G~e~~~~-----l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~   75 (150)
                      |||||..+...     +....+.++|+++++.|. .. +-.+  ..|++.+.+.  +.|+++|+||+|+...........
T Consensus        57 ~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~-~~-~~~d--~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~  130 (197)
T cd04104          57 WDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST-RF-SSND--VKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPR  130 (197)
T ss_pred             EeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC-CC-CHHH--HHHHHHHHHh--CCCEEEEEecccchhhhhhccccc
Confidence            89999764322     223346789998888442 22 2222  4566666664  689999999999854321100000


Q ss_pred             C-CCccCHHHHH----HHHHHc--CCcEEEEeccC--CCCCHHHHHHHHHHHHhC
Q 031970           76 G-LVPVTTAQGE----ELRKQI--GASYYIECSSK--TQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        76 ~-~~~v~~~~~~----~~~~~~--~~~~~~~~Sa~--~~~~i~~~~~~l~~~~~~  121 (150)
                      . ..+...++.+    ......  ...++|.+|+.  .+.++..+.+.+...+..
T Consensus       131 ~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~  185 (197)
T cd04104         131 SFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA  185 (197)
T ss_pred             cccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence            0 0011112222    222222  23478999998  578999999999988875

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG2262 HflX GTPases [General function prediction only]

Probab=98.60  E-value=5.7e-07  Score=69.32  Aligned_cols=88  Identities=20%  Similarity=0.241  Sum_probs=65.9

Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 031970           17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS   95 (150)
Q Consensus        17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   95 (150)
                      ...||+++.|.|+++|...+.+ ..-...+.+.. .+.|+|+|.||+|+..+..              ..... .... .
T Consensus       269 ~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~--------------~~~~~-~~~~-~  331 (411)
T COG2262         269 VKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEE--------------ILAEL-ERGS-P  331 (411)
T ss_pred             hhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchh--------------hhhhh-hhcC-C
Confidence            4579999999999999777776 66666666653 4799999999999775421              11111 1121 1


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           96 YYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        96 ~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      ..+.+||+++.|++.+.+.|...+..
T Consensus       332 ~~v~iSA~~~~gl~~L~~~i~~~l~~  357 (411)
T COG2262         332 NPVFISAKTGEGLDLLRERIIELLSG  357 (411)
T ss_pred             CeEEEEeccCcCHHHHHHHHHHHhhh
Confidence            57899999999999999999998864

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.58  E-value=3.1e-07  Score=68.81  Aligned_cols=89  Identities=22%  Similarity=0.181  Sum_probs=62.6

Q ss_pred             cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcC
Q 031970           14 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG   93 (150)
Q Consensus        14 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   93 (150)
                      ...+..||++|+|.|+.++.+.+..  .+...+    .+.|+++|.||+|+.+..            .......+.+..+
T Consensus        19 ~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~----~~kp~iiVlNK~DL~~~~------------~~~~~~~~~~~~~   80 (287)
T PRK09563         19 KENLKLVDVVIEVLDARIPLSSENP--MIDKII----GNKPRLLILNKSDLADPE------------VTKKWIEYFEEQG   80 (287)
T ss_pred             HHHhhhCCEEEEEEECCCCCCCCCh--hHHHHh----CCCCEEEEEEchhcCCHH------------HHHHHHHHHHHcC
Confidence            4468899999999999887665432  232222    268999999999985421            1122233333445


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           94 ASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        94 ~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      . +++.+||+++.|+.++.+.+...+.+
T Consensus        81 ~-~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         81 I-KALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             C-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence            4 78999999999999999998887754

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.58  E-value=1.2e-07  Score=61.81  Aligned_cols=83  Identities=23%  Similarity=0.177  Sum_probs=65.7

Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 031970           16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS   95 (150)
Q Consensus        16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   95 (150)
                      ...++|.+++|-.++++.+.-.-      .+... ...|+|-|.+|.|+.++.            ..+....|...-|..
T Consensus        61 t~~dadvi~~v~~and~~s~f~p------~f~~~-~~k~vIgvVTK~DLaed~------------dI~~~~~~L~eaGa~  121 (148)
T COG4917          61 TLQDADVIIYVHAANDPESRFPP------GFLDI-GVKKVIGVVTKADLAEDA------------DISLVKRWLREAGAE  121 (148)
T ss_pred             HhhccceeeeeecccCccccCCc------ccccc-cccceEEEEecccccchH------------hHHHHHHHHHHcCCc
Confidence            46689999999999998765432      22222 246799999999998643            557777888888888


Q ss_pred             EEEEeccCCCCCHHHHHHHHHH
Q 031970           96 YYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        96 ~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                      ++|++|+.++.|+++++..|..
T Consensus       122 ~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917         122 PIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             ceEEEeccCcccHHHHHHHHHh
Confidence            9999999999999999998864

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.56  E-value=2.3e-07  Score=76.02  Aligned_cols=131  Identities=13%  Similarity=0.159  Sum_probs=80.3

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc-----ccc---
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED-----KHY---   70 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~-----~~~---   70 (150)
                      ||||+|.|..++.....-||.+|+|.|+..   +.+.+.+     +.++.  .+.|+|+..||+|..=.     ...   
T Consensus       546 dtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR~--rktpFivALNKiDRLYgwk~~p~~~i~~  618 (1064)
T KOG1144|consen  546 DTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLRM--RKTPFIVALNKIDRLYGWKSCPNAPIVE  618 (1064)
T ss_pred             cCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHH-----HHHHh--cCCCeEEeehhhhhhcccccCCCchHHH
Confidence            999999999999999999999999999996   4444443     22222  36899999999996311     000   


Q ss_pred             -ccCCC-----CCCccCHHHHHHHHHH-c------------CCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcchhhhhc
Q 031970           71 -LADHP-----GLVPVTTAQGEELRKQ-I------------GASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKK  131 (150)
Q Consensus        71 -~~~~~-----~~~~v~~~~~~~~~~~-~------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~  131 (150)
                       ..++.     +...-....+.+|+.+ +            ....++++||.+|+||.+++-.|+......+..+ ..-.
T Consensus       619 ~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k-l~y~  697 (1064)
T KOG1144|consen  619 ALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK-LAYV  697 (1064)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH-Hhhh
Confidence             00000     0000000111122211 0            1134689999999999999999998776443221 1233


Q ss_pred             cCCCceeee
Q 031970          132 KQRGCLLNV  140 (150)
Q Consensus       132 ~~~~c~~~~  140 (150)
                      ..-.|++|.
T Consensus       698 ~ev~cTVlE  706 (1064)
T KOG1144|consen  698 DEVQCTVLE  706 (1064)
T ss_pred             hheeeEEEE
Confidence            355677763

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.56  E-value=2e-07  Score=69.11  Aligned_cols=63  Identities=21%  Similarity=0.313  Sum_probs=49.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      |||||+.+|......+++.+|++++|+|+++....... ..| ..+..  .++|+++++||+|+...
T Consensus        69 iDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~-~~~~~--~~~p~iivvNK~D~~~~  131 (268)
T cd04170          69 IDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTE-KLW-EFADE--AGIPRIIFINKMDRERA  131 (268)
T ss_pred             EECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHH-HHHHH--cCCCEEEEEECCccCCC
Confidence            79999999988888899999999999999987655432 333 23333  26899999999998754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK13796 GTPase YqeH; Provisional

Probab=98.56  E-value=3.3e-07  Score=70.90  Aligned_cols=84  Identities=23%  Similarity=0.374  Sum_probs=59.2

Q ss_pred             cCCc-EEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHH----HHHHHHc
Q 031970           18 RGAD-VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG----EELRKQI   92 (150)
Q Consensus        18 ~~ad-~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~   92 (150)
                      .+++ .+++|+|+.|..      ..|.+.+.+...+.|+++|+||+|+.....           ..+.+    ..+++..
T Consensus        67 ~~~~~lIv~VVD~~D~~------~s~~~~L~~~~~~kpviLViNK~DLl~~~~-----------~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         67 GDSDALVVNVVDIFDFN------GSWIPGLHRFVGNNPVLLVGNKADLLPKSV-----------KKNKVKNWLRQEAKEL  129 (365)
T ss_pred             cccCcEEEEEEECccCC------CchhHHHHHHhCCCCEEEEEEchhhCCCcc-----------CHHHHHHHHHHHHHhc
Confidence            4455 999999998743      234445555445789999999999965321           22333    3345555


Q ss_pred             CCc--EEEEeccCCCCCHHHHHHHHHHH
Q 031970           93 GAS--YYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        93 ~~~--~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                      ++.  .++.+||+++.|++++++.+.+.
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            642  58999999999999999999765

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=98.55  E-value=3.1e-07  Score=66.69  Aligned_cols=116  Identities=18%  Similarity=0.292  Sum_probs=75.2

Q ss_pred             CCCCCcccccc-----cccccccCCcEEEEEEeCCChhhHHHH--HHHHHHHHhhhCCCCCEEEEeeCCCcccccccccC
Q 031970            1 MNVIGQEDYNR-----LRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD   73 (150)
Q Consensus         1 wDt~G~e~~~~-----l~~~~~~~ad~~i~v~d~~~~~s~~~~--~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~   73 (150)
                      ||.|||..+-.     .....++++.++|+|+|+.+.+-.+++  +...+..+.+..|++.+-+...|.|+..+..-.. 
T Consensus        53 wD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~-  131 (232)
T PF04670_consen   53 WDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREE-  131 (232)
T ss_dssp             EEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHH-
T ss_pred             EEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHH-
Confidence            99999986644     346689999999999999954433333  1445556667778999999999999875432100 


Q ss_pred             CCCCCccCHHHHHHHHHHcC---CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           74 HPGLVPVTTAQGEELRKQIG---ASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                         ...-..+.+...+...+   + .++.+|.-+ ..+.+++-.++..++..
T Consensus       132 ---~~~~~~~~i~~~~~~~~~~~~-~~~~TSI~D-~Sly~A~S~Ivq~LiP~  178 (232)
T PF04670_consen  132 ---IFRDIQQRIRDELEDLGIEDI-TFFLTSIWD-ESLYEAWSKIVQKLIPN  178 (232)
T ss_dssp             ---HHHHHHHHHHHHHHHTT-TSE-EEEEE-TTS-THHHHHHHHHHHTTSTT
T ss_pred             ---HHHHHHHHHHHHhhhccccce-EEEeccCcC-cHHHHHHHHHHHHHccc
Confidence               00002234445555555   4 788888887 79999999999988754

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.55  E-value=6.5e-07  Score=67.01  Aligned_cols=87  Identities=17%  Similarity=0.339  Sum_probs=65.5

Q ss_pred             ccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHH
Q 031970           17 YRGADVFVLAFSLVSR---ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK   90 (150)
Q Consensus        17 ~~~ad~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~   90 (150)
                      +..+...++|.|++.+   ..++.+ +.+..++..+.   .+.|.++|+||+|+.+..             ...+..+++
T Consensus       272 iER~~~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-------------~~~l~~L~~  337 (366)
T KOG1489|consen  272 IERCKGLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKIDLPEAE-------------KNLLSSLAK  337 (366)
T ss_pred             HHhhceEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccCchhHH-------------HHHHHHHHH
Confidence            4478999999999998   777776 55555665554   479999999999986432             122456666


Q ss_pred             HcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031970           91 QIGASYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        91 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                      ...-..++++||+.+++++++++.|-.
T Consensus       338 ~lq~~~V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  338 RLQNPHVVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             HcCCCcEEEeeeccccchHHHHHHHhh
Confidence            665435899999999999999987654

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.50  E-value=3.8e-07  Score=69.16  Aligned_cols=100  Identities=19%  Similarity=0.153  Sum_probs=68.4

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccC
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT   81 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~   81 (150)
                      ||||||.|....-..-..||++|+++|+...---+   .+-...|.....=..+++..||+||.+-...      .=+-.
T Consensus        92 DTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~Q---TrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~------~F~~I  162 (431)
T COG2895          92 DTPGHEQYTRNMATGASTADLAILLVDARKGVLEQ---TRRHSFIASLLGIRHVVVAVNKMDLVDYSEE------VFEAI  162 (431)
T ss_pred             cCCcHHHHhhhhhcccccccEEEEEEecchhhHHH---hHHHHHHHHHhCCcEEEEEEeeecccccCHH------HHHHH
Confidence            99999999998877888999999999996532111   1222233332223568999999999875431      00013


Q ss_pred             HHHHHHHHHHcCC--cEEEEeccCCCCCHHH
Q 031970           82 TAQGEELRKQIGA--SYYIECSSKTQQNVKA  110 (150)
Q Consensus        82 ~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~  110 (150)
                      ..+...++..+++  ..++++||..|.||-.
T Consensus       163 ~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         163 VADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            3456677888775  3589999999998753

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.48  E-value=1.2e-07  Score=69.12  Aligned_cols=119  Identities=18%  Similarity=0.148  Sum_probs=59.1

Q ss_pred             CCCCCcccccccccccc--------cCCcEEEEEEeCCChhhHHHHHHHHHHHHh-hhCCCCCEEEEeeCCCcccccccc
Q 031970            1 MNVIGQEDYNRLRPLSY--------RGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLREDKHYL   71 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~--------~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~-~~~~~~piilv~nK~D~~~~~~~~   71 (150)
                      .|||||.++-..+...-        ...-+++++.|..-..+.......++-... ...-+.|.|.|.||+|+.+.....
T Consensus        96 ~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~~~~~  175 (238)
T PF03029_consen   96 FDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSKYLEF  175 (238)
T ss_dssp             EE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-HHHHH
T ss_pred             EeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccchhHH
Confidence            49999999877665433        456799999998744332222122222222 111279999999999998722000


Q ss_pred             c----CCC--------CCCccCHHHHHHHHHHcCCc-EEEEeccCCCCCHHHHHHHHHHHH
Q 031970           72 A----DHP--------GLVPVTTAQGEELRKQIGAS-YYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        72 ~----~~~--------~~~~v~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      .    ...        ....-....+..+...++.. .++++|+.+++++.+++..+-+.+
T Consensus       176 ~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  176 ILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            0    000        00000112223333344555 799999999999999998876543

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=7.6e-07  Score=66.88  Aligned_cols=107  Identities=20%  Similarity=0.184  Sum_probs=73.5

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCC
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVS----RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~----~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      |.||||-.-...-+.-.=.|++++|++.+.    |++-+++ -. + +|.   .-..+|+|-||+|+...+...      
T Consensus        92 DaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl-~A-l-eIi---gik~iiIvQNKIDlV~~E~Al------  159 (415)
T COG5257          92 DAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHL-MA-L-EII---GIKNIIIVQNKIDLVSRERAL------  159 (415)
T ss_pred             eCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHH-HH-H-hhh---ccceEEEEecccceecHHHHH------
Confidence            788888654433334444699999999996    5666665 11 1 222   236799999999998765420      


Q ss_pred             CccCHHHHHHHHHHc---CCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           78 VPVTTAQGEELRKQI---GASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        78 ~~v~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                        ...+++.+|.+..   + .|++++||..+.||+.+++.+.+.+..+.
T Consensus       160 --E~y~qIk~FvkGt~Ae~-aPIIPiSA~~~~NIDal~e~i~~~IptP~  205 (415)
T COG5257         160 --ENYEQIKEFVKGTVAEN-APIIPISAQHKANIDALIEAIEKYIPTPE  205 (415)
T ss_pred             --HHHHHHHHHhcccccCC-CceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence              1223444444332   3 48999999999999999999999998764

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=98.43  E-value=5.8e-07  Score=67.05  Aligned_cols=105  Identities=15%  Similarity=0.132  Sum_probs=64.3

Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccc-c----CCCCCCccCHHHHHHHH
Q 031970           15 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL-A----DHPGLVPVTTAQGEELR   89 (150)
Q Consensus        15 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~-~----~~~~~~~v~~~~~~~~~   89 (150)
                      ..+..||++++|+|++++...-+  ...+..+..+ ..+|-++|.||.|........ .    -.+.......-++++-.
T Consensus       151 ~a~q~AD~vvVv~Das~tr~~l~--p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f  227 (379)
T KOG1423|consen  151 DAAQNADCVVVVVDASATRTPLH--PRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKF  227 (379)
T ss_pred             HHHhhCCEEEEEEeccCCcCccC--hHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHh
Confidence            35678999999999997544433  3444444443 468999999999976543210 0    00000000011111111


Q ss_pred             HHc-------------CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           90 KQI-------------GASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        90 ~~~-------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ...             ++..+|.+||++|.||+++-+.|+.+....
T Consensus       228 ~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g  273 (379)
T KOG1423|consen  228 TDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG  273 (379)
T ss_pred             ccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence            111             123489999999999999999999988643

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.41  E-value=2.9e-06  Score=59.81  Aligned_cols=101  Identities=16%  Similarity=0.165  Sum_probs=70.9

Q ss_pred             cccccccccccccCC---cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCH
Q 031970            6 QEDYNRLRPLSYRGA---DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT   82 (150)
Q Consensus         6 ~e~~~~l~~~~~~~a---d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~   82 (150)
                      +|.+..+...|++..   .++++++|+..+..-.+.  +.++-+...  ++|+++|+||+|......           ..
T Consensus        90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~~--~i~~~vv~tK~DKi~~~~-----------~~  154 (200)
T COG0218          90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLEL--GIPVIVVLTKADKLKKSE-----------RN  154 (200)
T ss_pred             HHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEccccCChhH-----------HH
Confidence            667777778888763   589999999987766553  444444443  799999999999887543           22


Q ss_pred             HHHHHHHHHc----CCcE-EEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           83 AQGEELRKQI----GASY-YIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        83 ~~~~~~~~~~----~~~~-~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      ......++..    ...+ ++..|+..+.|++++...|...+..
T Consensus       155 k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         155 KQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             HHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            3333444333    2211 7788999999999999999887653

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.39  E-value=2.6e-06  Score=66.84  Aligned_cols=108  Identities=14%  Similarity=0.142  Sum_probs=77.7

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccC
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT   81 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~   81 (150)
                      |||||-+|..-.+..++-.|+++++.|+....--+-- --..+.+..   +.+.|+|.||+|.+..++.        +|.
T Consensus        74 DTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTr-FVlkKAl~~---gL~PIVVvNKiDrp~Arp~--------~Vv  141 (603)
T COG1217          74 DTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTR-FVLKKALAL---GLKPIVVINKIDRPDARPD--------EVV  141 (603)
T ss_pred             cCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchh-hhHHHHHHc---CCCcEEEEeCCCCCCCCHH--------HHH
Confidence            9999999999999999999999999999985544321 112223332   6788899999998876542        222


Q ss_pred             HHHHHHHHHH-------cCCcEEEEeccCCC----------CCHHHHHHHHHHHHhCCC
Q 031970           82 TAQGEELRKQ-------IGASYYIECSSKTQ----------QNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        82 ~~~~~~~~~~-------~~~~~~~~~Sa~~~----------~~i~~~~~~l~~~~~~~~  123 (150)
                       .+...+.-.       +.+ |++..|+++|          .+...+|+.+++.+..|.
T Consensus       142 -d~vfDLf~~L~A~deQLdF-PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         142 -DEVFDLFVELGATDEQLDF-PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             -HHHHHHHHHhCCChhhCCC-cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence             333333322       344 7888999887          368899999999988765

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.33  E-value=4e-06  Score=63.41  Aligned_cols=96  Identities=19%  Similarity=0.255  Sum_probs=67.2

Q ss_pred             ccCCcEEEEEEeCCChh---hHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHH
Q 031970           17 YRGADVFVLAFSLVSRA---SYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK   90 (150)
Q Consensus        17 ~~~ad~~i~v~d~~~~~---s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~   90 (150)
                      +..+.+.+.|+|++..+   ..++. ..+..++..+.   .+.|.++|+||+|+......          .......+.+
T Consensus       235 IERt~vL~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~----------~~~~~~~l~~  303 (369)
T COG0536         235 IERTRVLLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEE----------LEELKKALAE  303 (369)
T ss_pred             HHhhheeEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcCHHH----------HHHHHHHHHH
Confidence            34688999999999654   35554 56666666665   47999999999996654321          2233334444


Q ss_pred             HcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           91 QIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        91 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      ..++..++.+||.++.|++++...+...+.+..
T Consensus       304 ~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         304 ALGWEVFYLISALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             hcCCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence            555533334999999999999999998887653

>PRK01889 GTPase RsgA; Reviewed

Probab=98.30  E-value=4.8e-06  Score=64.25  Aligned_cols=84  Identities=20%  Similarity=0.190  Sum_probs=58.6

Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 031970           17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY   96 (150)
Q Consensus        17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   96 (150)
                      ..++|.+++|+++..+-....+ +.++..+...  ++|.++|.||+|+.+....          .......+  ..+. +
T Consensus       110 aANvD~vliV~s~~p~~~~~~l-dr~L~~a~~~--~i~piIVLNK~DL~~~~~~----------~~~~~~~~--~~g~-~  173 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRI-ERYLALAWES--GAEPVIVLTKADLCEDAEE----------KIAEVEAL--APGV-P  173 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHH-HHHHHHHHHc--CCCEEEEEEChhcCCCHHH----------HHHHHHHh--CCCC-c
Confidence            5789999999999754444444 6776665543  7888999999999753110          11222222  3344 8


Q ss_pred             EEEeccCCCCCHHHHHHHHH
Q 031970           97 YIECSSKTQQNVKAVFDAAI  116 (150)
Q Consensus        97 ~~~~Sa~~~~~i~~~~~~l~  116 (150)
                      ++.+|++++.|++++...+.
T Consensus       174 Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        174 VLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             EEEEECCCCccHHHHHHHhh
Confidence            89999999999999888874

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.27  E-value=4.7e-06  Score=64.86  Aligned_cols=102  Identities=15%  Similarity=0.145  Sum_probs=73.6

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |+||+++|-...-..+...|.+++|.|.++   +.+.+.+      .+.....-...++|.||+|..+...         
T Consensus        56 Dvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL------~iLdllgi~~giivltk~D~~d~~r---------  120 (447)
T COG3276          56 DVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHL------LILDLLGIKNGIIVLTKADRVDEAR---------  120 (447)
T ss_pred             eCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHH------HHHHhcCCCceEEEEeccccccHHH---------
Confidence            889999987755566778999999999964   5666665      2222233345799999999886532         


Q ss_pred             ccCHHHHHHHHHH--cCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           79 PVTTAQGEELRKQ--IGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        79 ~v~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                        ..+...++...  +...+++.+|++++.||+++-+.|....-
T Consensus       121 --~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         121 --IEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             --HHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence              22333333333  33458899999999999999999998884

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.26  E-value=1.5e-06  Score=60.78  Aligned_cols=67  Identities=15%  Similarity=0.173  Sum_probs=42.2

Q ss_pred             CCCCcccccc-cccc--cccCCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhh---CCCCCEEEEeeCCCccccc
Q 031970            2 NVIGQEDYNR-LRPL--SYRGADVFVLAFSLVS-RASYENVLKKWIPELQHY---SPGVPVVLVGTKLDLREDK   68 (150)
Q Consensus         2 Dt~G~e~~~~-l~~~--~~~~ad~~i~v~d~~~-~~s~~~~~~~~~~~i~~~---~~~~piilv~nK~D~~~~~   68 (150)
                      |+||+++.+. +...  +...+.++|||.|.+. +....++-+.++..+...   ....|+++++||.|+....
T Consensus        55 D~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~  128 (181)
T PF09439_consen   55 DIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK  128 (181)
T ss_dssp             EETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred             ECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence            8999999876 3333  5788999999999984 444555423333333222   2469999999999987654

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>TIGR00101 ureG urease accessory protein UreG

Probab=98.25  E-value=5.1e-06  Score=59.07  Aligned_cols=81  Identities=22%  Similarity=0.226  Sum_probs=54.2

Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCE--EEEeeCCCcccccccccCCCCCCccCHHHHHHHHHH-cCCcE
Q 031970           20 ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV--VLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ-IGASY   96 (150)
Q Consensus        20 ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi--ilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~   96 (150)
                      ++.+|.|+|+.+..+...   .+..       ++..  ++++||+|+......          .........+. ....+
T Consensus       113 ~~~~i~vvD~~~~~~~~~---~~~~-------qi~~ad~~~~~k~d~~~~~~~----------~~~~~~~~~~~~~~~~~  172 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKIPR---KGGP-------GITRSDLLVINKIDLAPMVGA----------DLGVMERDAKKMRGEKP  172 (199)
T ss_pred             hCcEEEEEEcchhhhhhh---hhHh-------HhhhccEEEEEhhhccccccc----------cHHHHHHHHHHhCCCCC
Confidence            688999999987655321   1111       2334  889999999742111          23333333333 22358


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHh
Q 031970           97 YIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        97 ~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      ++++||++|+|++++|+.+.+...
T Consensus       173 i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       173 FIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcC
Confidence            999999999999999999987654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK00007 elongation factor G; Reviewed

Probab=98.23  E-value=3.4e-06  Score=70.31  Aligned_cols=88  Identities=18%  Similarity=0.206  Sum_probs=60.7

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccC
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT   81 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~   81 (150)
                      ||||+.+|..-....++.+|++++|+|+......+..  ..+..+.+.  +.|+|++.||+|+....            .
T Consensus        81 DTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~--~~~~~~~~~--~~p~iv~vNK~D~~~~~------------~  144 (693)
T PRK00007         81 DTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE--TVWRQADKY--KVPRIAFVNKMDRTGAD------------F  144 (693)
T ss_pred             eCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhH--HHHHHHHHc--CCCEEEEEECCCCCCCC------------H
Confidence            9999999877667788999999999999877665553  333344433  68999999999987543            2


Q ss_pred             HHHHHHHHHHcCC---cEEEEeccCCC
Q 031970           82 TAQGEELRKQIGA---SYYIECSSKTQ  105 (150)
Q Consensus        82 ~~~~~~~~~~~~~---~~~~~~Sa~~~  105 (150)
                      ......+.+.++.   ...+++|+.++
T Consensus       145 ~~~~~~i~~~l~~~~~~~~ipisa~~~  171 (693)
T PRK00007        145 YRVVEQIKDRLGANPVPIQLPIGAEDD  171 (693)
T ss_pred             HHHHHHHHHHhCCCeeeEEecCccCCc
Confidence            2333344444443   34566777665

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.20  E-value=1.1e-06  Score=73.56  Aligned_cols=62  Identities=16%  Similarity=0.103  Sum_probs=47.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE   66 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~   66 (150)
                      |||||+.+|......+++.+|++|+|+|+.+....+.. ..|. ....  .+.|+++++||+|...
T Consensus        91 iDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~-~~~~--~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        91 IDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLR-QALK--ENVKPVLFINKVDRLI  152 (720)
T ss_pred             EeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHH-HHHH--cCCCEEEEEEChhccc
Confidence            79999999988888899999999999999885444332 2232 2222  3678999999999863

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.15  E-value=7.7e-06  Score=68.57  Aligned_cols=62  Identities=16%  Similarity=0.086  Sum_probs=47.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE   66 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~   66 (150)
                      .||||+.+|.......++.+|++|+|+|+......+.. .-|. ...+.  +.|+|++.||+|+..
T Consensus        92 iDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~-~~~~~--~~~~iv~iNK~D~~~  153 (731)
T PRK07560         92 IDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLR-QALRE--RVKPVLFINKVDRLI  153 (731)
T ss_pred             EcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHH-HHHHc--CCCeEEEEECchhhc
Confidence            39999999988888899999999999999886554432 3333 32222  578899999999763

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.15  E-value=1.2e-05  Score=61.47  Aligned_cols=100  Identities=12%  Similarity=0.115  Sum_probs=59.7

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccC
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT   81 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~   81 (150)
                      ||+|...-..   .....||.++++.+.......+..    ...+.+    ..-++|+||+|+.+....        .-.
T Consensus       155 eT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~----k~gi~E----~aDIiVVNKaDl~~~~~a--------~~~  215 (332)
T PRK09435        155 ETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGI----KKGIME----LADLIVINKADGDNKTAA--------RRA  215 (332)
T ss_pred             ECCCCccchh---HHHHhCCEEEEEecCCchHHHHHH----Hhhhhh----hhheEEeehhcccchhHH--------HHH
Confidence            5666542111   145679999999764444444332    222332    334899999998754321        001


Q ss_pred             HHHHHHHHHHc-----CC-cEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           82 TAQGEELRKQI-----GA-SYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        82 ~~~~~~~~~~~-----~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      ..+........     ++ .+++.+||+++.|++++++.+.+.+.
T Consensus       216 ~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        216 AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            12222222211     12 48999999999999999999998764

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.13  E-value=1.1e-05  Score=64.69  Aligned_cols=96  Identities=24%  Similarity=0.272  Sum_probs=73.9

Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031970           18 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY   97 (150)
Q Consensus        18 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   97 (150)
                      ..+|++.++||.+++.+|... ...++.... ....|+++|++|+|+.+...-          ..-+...+++++++.+.
T Consensus       494 ~~cDv~~~~YDsS~p~sf~~~-a~v~~~~~~-~~~~Pc~~va~K~dlDe~~Q~----------~~iqpde~~~~~~i~~P  561 (625)
T KOG1707|consen  494 AACDVACLVYDSSNPRSFEYL-AEVYNKYFD-LYKIPCLMVATKADLDEVPQR----------YSIQPDEFCRQLGLPPP  561 (625)
T ss_pred             ceeeeEEEecccCCchHHHHH-HHHHHHhhh-ccCCceEEEeeccccchhhhc----------cCCChHHHHHhcCCCCC
Confidence            568999999999999999987 444433322 257999999999999775432          22223789999999888


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCCCcch
Q 031970           98 IECSSKTQQNVKAVFDAAIKVVIKPPQKQ  126 (150)
Q Consensus        98 ~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~  126 (150)
                      ..+|.+.... .++|..|+.....|+.+.
T Consensus       562 ~~~S~~~~~s-~~lf~kL~~~A~~Ph~~~  589 (625)
T KOG1707|consen  562 IHISSKTLSS-NELFIKLATMAQYPHIPR  589 (625)
T ss_pred             eeeccCCCCC-chHHHHHHHhhhCCCccc
Confidence            9999997555 999999999998887433

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.09  E-value=7.6e-06  Score=63.30  Aligned_cols=100  Identities=18%  Similarity=0.131  Sum_probs=67.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA----------SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY   70 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~----------s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~   70 (150)
                      .|+||+.+|-...-.....||++|||.|+.+.+          +.+++      .+.+...=..+|++.||.|..+-+..
T Consensus        90 iDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~------~La~tlGi~~lIVavNKMD~v~wde~  163 (428)
T COG5256          90 IDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA------FLARTLGIKQLIVAVNKMDLVSWDEE  163 (428)
T ss_pred             eeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH------HHHHhcCCceEEEEEEcccccccCHH
Confidence            399999999887777889999999999999862          33433      22222223468999999998763211


Q ss_pred             ccCCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHHH
Q 031970           71 LADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAVF  112 (150)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~  112 (150)
                           .- +....++..+.+..|+    .+|+++|+..|.|+.+.-
T Consensus       164 -----rf-~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s  203 (428)
T COG5256         164 -----RF-EEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS  203 (428)
T ss_pred             -----HH-HHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence                 00 0122344446666654    359999999999987643

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.09  E-value=5.2e-06  Score=56.75  Aligned_cols=66  Identities=17%  Similarity=0.263  Sum_probs=52.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~   67 (150)
                      +|-.|+-.=+..|..|+..+|++++.+|+-|.+.|.+.. .-+..+....  .++|+++.+||+|....
T Consensus        69 ~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~-~eld~ll~~e~la~vp~lilgnKId~p~a  136 (193)
T KOG0077|consen   69 FDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESK-KELDALLSDESLATVPFLILGNKIDIPYA  136 (193)
T ss_pred             EccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHH-HHHHHHHhHHHHhcCcceeecccccCCCc
Confidence            477787777788999999999999999999999998873 3333333322  47999999999998754

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.08  E-value=4.9e-05  Score=56.96  Aligned_cols=100  Identities=19%  Similarity=0.197  Sum_probs=74.4

Q ss_pred             ccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHH
Q 031970            7 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE   86 (150)
Q Consensus         7 e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~   86 (150)
                      ++.+.+.+.-+.+.|-.++|+.+.+|+--...+++++-....  .++..+++.||+|+.++...          ..++..
T Consensus        67 ~Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~--~gi~pvIvlnK~DL~~~~~~----------~~~~~~  134 (301)
T COG1162          67 PRKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA--GGIEPVIVLNKIDLLDDEEA----------AVKELL  134 (301)
T ss_pred             cccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH--cCCcEEEEEEccccCcchHH----------HHHHHH
Confidence            344556666777888889999999887544444777655543  37788888999999986542          114566


Q ss_pred             HHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           87 ELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        87 ~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      ......+. +.+.+|++++.+++++...+...+
T Consensus       135 ~~y~~~gy-~v~~~s~~~~~~~~~l~~~l~~~~  166 (301)
T COG1162         135 REYEDIGY-PVLFVSAKNGDGLEELAELLAGKI  166 (301)
T ss_pred             HHHHhCCe-eEEEecCcCcccHHHHHHHhcCCe
Confidence            67777887 899999999999999998876544

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=98.07  E-value=2.9e-05  Score=60.63  Aligned_cols=61  Identities=16%  Similarity=0.231  Sum_probs=45.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR   65 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~   65 (150)
                      .|||||++|+.=+-..+.-+|.+++|+|+-....-+-.  ++.+--+.  .++||+-..||.|..
T Consensus        86 LDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~--KLfeVcrl--R~iPI~TFiNKlDR~  146 (528)
T COG4108          86 LDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL--KLFEVCRL--RDIPIFTFINKLDRE  146 (528)
T ss_pred             cCCCCccccchhHHHHHHhhheeeEEEecccCccHHHH--HHHHHHhh--cCCceEEEeeccccc
Confidence            49999999988666678889999999999876554443  33222221  389999999999964

>COG1084 Predicted GTPase [General function prediction only]

Probab=98.02  E-value=2.4e-05  Score=58.96  Aligned_cols=89  Identities=18%  Similarity=0.271  Sum_probs=67.3

Q ss_pred             CcEEEEEEeCCChh--hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031970           20 ADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY   97 (150)
Q Consensus        20 ad~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   97 (150)
                      +++++|+||++...  +.+.. ..++.++..... .|+++|.||.|.....            ..++........+....
T Consensus       248 ~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~~~e------------~~~~~~~~~~~~~~~~~  313 (346)
T COG1084         248 AGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIADEE------------KLEEIEASVLEEGGEEP  313 (346)
T ss_pred             cCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEecccccchh------------HHHHHHHHHHhhccccc
Confidence            68999999999744  56665 678888887776 8999999999988544            33444444555555567


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           98 IECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        98 ~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ..+++..+.+++.+-..+.....++
T Consensus       314 ~~~~~~~~~~~d~~~~~v~~~a~~~  338 (346)
T COG1084         314 LKISATKGCGLDKLREEVRKTALEP  338 (346)
T ss_pred             cceeeeehhhHHHHHHHHHHHhhch
Confidence            8899999999998888887775543

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=98.01  E-value=3.5e-06  Score=54.56  Aligned_cols=77  Identities=27%  Similarity=0.417  Sum_probs=54.7

Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHH
Q 031970           11 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR   89 (150)
Q Consensus        11 ~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~   89 (150)
                      .+...+++.++++++||+.++..+++.+   |...+.... .+.|.++++||.|+.+...          +..+...   
T Consensus        38 ~~~~~~~~s~~~~~~v~~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~~~----------~~~~~~~---  101 (124)
T smart00010       38 VYDPTSYESFDVVLQCWRVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEERQ----------VATEEGL---  101 (124)
T ss_pred             hccccccCCCCEEEEEEEccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhhCc----------CCHHHHH---
Confidence            3456678899999999999999998753   766665443 4688999999999744321          1322222   


Q ss_pred             HHcCCcEEEEeccCCCCCHH
Q 031970           90 KQIGASYYIECSSKTQQNVK  109 (150)
Q Consensus        90 ~~~~~~~~~~~Sa~~~~~i~  109 (150)
                            +++++|++++.|+.
T Consensus       102 ------~~~~~s~~~~~~~~  115 (124)
T smart00010      102 ------EFAETSAKTPEEGE  115 (124)
T ss_pred             ------HHHHHhCCCcchhh
Confidence                  45577888988884

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.00  E-value=5.5e-05  Score=53.98  Aligned_cols=82  Identities=18%  Similarity=0.124  Sum_probs=52.0

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcC-CcEE
Q 031970           19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASYY   97 (150)
Q Consensus        19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~   97 (150)
                      ..+..+.|+|..+......   ... .+    ...|.++++||+|+.+....          .........+..+ ..++
T Consensus       123 ~~~~~i~Vvd~~~~d~~~~---~~~-~~----~~~a~iiv~NK~Dl~~~~~~----------~~~~~~~~l~~~~~~~~i  184 (207)
T TIGR00073       123 GEHMRVVLLSVTEGDDKPL---KYP-GM----FKEADLIVINKADLAEAVGF----------DVEKMKADAKKINPEAEI  184 (207)
T ss_pred             ccCeEEEEEecCcccchhh---hhH-hH----HhhCCEEEEEHHHccccchh----------hHHHHHHHHHHhCCCCCE
Confidence            3456677888876443211   111 11    14688999999999753211          2233333333332 2489


Q ss_pred             EEeccCCCCCHHHHHHHHHHH
Q 031970           98 IECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        98 ~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                      +++||+++.|++++|+.+.+.
T Consensus       185 ~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       185 ILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999999764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd01850 CDC_Septin CDC/Septin

Probab=98.00  E-value=9.7e-06  Score=60.48  Aligned_cols=79  Identities=9%  Similarity=0.004  Sum_probs=48.5

Q ss_pred             cccccccC--CcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHH
Q 031970           12 LRPLSYRG--ADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL   88 (150)
Q Consensus        12 l~~~~~~~--ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~   88 (150)
                      .+..++.+  +|+++++++.+.. .+..++  ..++.+.   ..+|+++|+||+|+......        ......+.+.
T Consensus       105 ~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~--~~lk~l~---~~v~vi~VinK~D~l~~~e~--------~~~k~~i~~~  171 (276)
T cd01850         105 KRNPRIPDTRVHACLYFIEPTGHGLKPLDI--EFMKRLS---KRVNIIPVIAKADTLTPEEL--------KEFKQRIMED  171 (276)
T ss_pred             cccccCCCCceEEEEEEEeCCCCCCCHHHH--HHHHHHh---ccCCEEEEEECCCcCCHHHH--------HHHHHHHHHH
Confidence            33355554  6777777777642 122222  3344443   36899999999998653221        1245677788


Q ss_pred             HHHcCCcEEEEeccCC
Q 031970           89 RKQIGASYYIECSSKT  104 (150)
Q Consensus        89 ~~~~~~~~~~~~Sa~~  104 (150)
                      +..+++ +++......
T Consensus       172 l~~~~i-~~~~~~~~~  186 (276)
T cd01850         172 IEEHNI-KIYKFPEDE  186 (276)
T ss_pred             HHHcCC-ceECCCCCc
Confidence            888887 787766543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK09602 translation-associated GTPase; Reviewed

Probab=97.98  E-value=3.3e-05  Score=60.46  Aligned_cols=56  Identities=16%  Similarity=0.222  Sum_probs=39.2

Q ss_pred             CCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHH-HHHHHHHHHhCC
Q 031970           52 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKA-VFDAAIKVVIKP  122 (150)
Q Consensus        52 ~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~-~~~~l~~~~~~~  122 (150)
                      .+|+|+|+||.|+....              .....+.+. +...++++||+.+.++.+ +.+.+++++.+.
T Consensus       217 ~KPvI~VlNK~D~~~~~--------------~~l~~i~~~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~  273 (396)
T PRK09602        217 SKPMVIAANKADLPPAE--------------ENIERLKEE-KYYIVVPTSAEAELALRRAAKAGLIDYIPGD  273 (396)
T ss_pred             CCCEEEEEEchhcccch--------------HHHHHHHhc-CCCcEEEEcchhhhhHHHHHHHhHHhhCCCC
Confidence            48999999999965321              112222222 445799999999999999 777777776553

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.96  E-value=4e-05  Score=43.28  Aligned_cols=43  Identities=26%  Similarity=0.390  Sum_probs=30.6

Q ss_pred             CcEEEEEEeCCChh--hHHHHHHHHHHHHhhhCCCCCEEEEeeCCC
Q 031970           20 ADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLD   63 (150)
Q Consensus        20 ad~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piilv~nK~D   63 (150)
                      ++++++++|++..-  +.++. -.++.+++...++.|+++|.||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence            68999999999754  55654 678889999888999999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=97.93  E-value=2.4e-05  Score=58.37  Aligned_cols=108  Identities=20%  Similarity=0.293  Sum_probs=73.5

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCC
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      |+||+-+|-...-..-...|+.|+|..++|   |.+-++++     ..++.  ++| ++++.||+|+.++...       
T Consensus        81 DcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-----larqv--Gvp~ivvflnK~Dmvdd~el-------  146 (394)
T COG0050          81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL-----LARQV--GVPYIVVFLNKVDMVDDEEL-------  146 (394)
T ss_pred             cCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-----hhhhc--CCcEEEEEEecccccCcHHH-------
Confidence            899999997755555667899999999999   45666651     12222  565 5688899999975431       


Q ss_pred             CccCHHHHHHHHHHcCC----cEEEEeccCCCC--------CHHHHHHHHHHHHhCCC
Q 031970           78 VPVTTAQGEELRKQIGA----SYYIECSSKTQQ--------NVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        78 ~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~--------~i~~~~~~l~~~~~~~~  123 (150)
                      .+...-+...+...|++    .|++.-||...-        .|.++++.+-.++..+.
T Consensus       147 lelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Pe  204 (394)
T COG0050         147 LELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPE  204 (394)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCC
Confidence            23455677788888876    246666665432        36777777777776653

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=97.89  E-value=5.2e-05  Score=61.99  Aligned_cols=87  Identities=16%  Similarity=0.209  Sum_probs=67.5

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 031970           19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI   98 (150)
Q Consensus        19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   98 (150)
                      ++|++|-|.|+++.+..-.+    .-++.+.  +.|++++.|+.|......           ..-+..++.+..|+ |++
T Consensus        81 ~~D~ivnVvDAtnLeRnLyl----tlQLlE~--g~p~ilaLNm~D~A~~~G-----------i~ID~~~L~~~LGv-PVv  142 (653)
T COG0370          81 KPDLIVNVVDATNLERNLYL----TLQLLEL--GIPMILALNMIDEAKKRG-----------IRIDIEKLSKLLGV-PVV  142 (653)
T ss_pred             CCCEEEEEcccchHHHHHHH----HHHHHHc--CCCeEEEeccHhhHHhcC-----------CcccHHHHHHHhCC-CEE
Confidence            47999999999997655433    1133333  789999999999877654           44556677888898 999


Q ss_pred             EeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           99 ECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        99 ~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      ++||+.|.|++++...+.+....+.
T Consensus       143 ~tvA~~g~G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         143 PTVAKRGEGLEELKRAIIELAESKT  167 (653)
T ss_pred             EEEeecCCCHHHHHHHHHHhccccc
Confidence            9999999999999999987665543

>COG3596 Predicted GTPase [General function prediction only]

Probab=97.89  E-value=2.8e-05  Score=57.44  Aligned_cols=117  Identities=15%  Similarity=0.090  Sum_probs=77.7

Q ss_pred             CCCCCccc-------ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc--c
Q 031970            1 MNVIGQED-------YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY--L   71 (150)
Q Consensus         1 wDt~G~e~-------~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~--~   71 (150)
                      |||||-++       +..+...++...|.++++.+..|+.=--+  ..++..+....-+.|++++.|-+|.......  .
T Consensus        92 wDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d--~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~  169 (296)
T COG3596          92 WDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTD--EDFLRDVIILGLDKRVLFVVTQADRAEPGREWDS  169 (296)
T ss_pred             ecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCC--HHHHHHHHHhccCceeEEEEehhhhhcccccccc
Confidence            99999776       66666778899999999999998763333  2344444444445899999999997654200  0


Q ss_pred             cCCCCCCc---cCH---HHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           72 ADHPGLVP---VTT---AQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        72 ~~~~~~~~---v~~---~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      ..+.....   -..   +...++++.  ..|++.+|...+.|++++...+++.+..
T Consensus       170 ~~~~p~~a~~qfi~~k~~~~~~~~q~--V~pV~~~~~r~~wgl~~l~~ali~~lp~  223 (296)
T COG3596         170 AGHQPSPAIKQFIEEKAEALGRLFQE--VKPVVAVSGRLPWGLKELVRALITALPV  223 (296)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHhh--cCCeEEeccccCccHHHHHHHHHHhCcc
Confidence            00000000   011   223344444  3478899999999999999999988863

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=97.86  E-value=0.00013  Score=52.81  Aligned_cols=113  Identities=16%  Similarity=0.242  Sum_probs=73.1

Q ss_pred             CCCCCcccc-----cccccccccCCcEEEEEEeCCChhhHHHH--HHHHHHHHhhhCCCCCEEEEeeCCCcccccccccC
Q 031970            1 MNVIGQEDY-----NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD   73 (150)
Q Consensus         1 wDt~G~e~~-----~~l~~~~~~~ad~~i~v~d~~~~~s~~~~--~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~   73 (150)
                      ||.+|||.|     +.-....+++.+++|+|||+...+-..++  .+.-++.+.++.|+..+.....|.|+......   
T Consensus        58 wDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r---  134 (295)
T KOG3886|consen   58 WDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDAR---  134 (295)
T ss_pred             hccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchH---
Confidence            999999954     23446789999999999999986533333  14445677777788889999999999875431   


Q ss_pred             CCCCCccCH----HHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           74 HPGLVPVTT----AQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        74 ~~~~~~v~~----~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                           .+..    +....+....++ .++++|.-+ +.+......++..+...+
T Consensus       135 -----~~if~~r~~~l~~~s~~~~~-~~f~TsiwD-etl~KAWS~iv~~lipn~  181 (295)
T KOG3886|consen  135 -----ELIFQRRKEDLRRLSRPLEC-KCFPTSIWD-ETLYKAWSSIVYNLIPNV  181 (295)
T ss_pred             -----HHHHHHHHHHHHHhcccccc-cccccchhh-HHHHHHHHHHHHhhCCCh
Confidence                 1111    222233333444 677777664 455556666666555443

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=97.85  E-value=1.5e-05  Score=67.81  Aligned_cols=61  Identities=13%  Similarity=0.118  Sum_probs=48.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR   65 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~   65 (150)
                      .||||+.+|.......++.+|++|+|+|+......+.. .-| +.+..  .++|++++.||+|..
T Consensus       103 iDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~-~~~~~--~~~p~i~~iNK~D~~  163 (843)
T PLN00116        103 IDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVL-RQALG--ERIRPVLTVNKMDRC  163 (843)
T ss_pred             ECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHH-HHHHH--CCCCEEEEEECCccc
Confidence            39999999998888889999999999999987655543 333 33332  268999999999987

>PTZ00416 elongation factor 2; Provisional

Probab=97.76  E-value=2.3e-05  Score=66.66  Aligned_cols=61  Identities=15%  Similarity=0.140  Sum_probs=48.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR   65 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~   65 (150)
                      .||||+.+|..-....++.+|++|+|+|+.+....+..  ...+.+...  +.|+|++.||+|+.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~--~~~~~~~~~--~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE--TVLRQALQE--RIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH--HHHHHHHHc--CCCEEEEEEChhhh
Confidence            39999999988788889999999999999986655542  333444432  68999999999987

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.71  E-value=0.00014  Score=51.90  Aligned_cols=67  Identities=18%  Similarity=0.161  Sum_probs=44.6

Q ss_pred             CCCCccccccccccccc---CCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhh---CCCCCEEEEeeCCCccccc
Q 031970            2 NVIGQEDYNRLRPLSYR---GADVFVLAFSLVS-RASYENVLKKWIPELQHY---SPGVPVVLVGTKLDLREDK   68 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~---~ad~~i~v~d~~~-~~s~~~~~~~~~~~i~~~---~~~~piilv~nK~D~~~~~   68 (150)
                      |.||+.+.+.-...+++   .+-+++||.|..- +....++-+.++..+...   ....|+++.+||.|+....
T Consensus        88 D~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAk  161 (238)
T KOG0090|consen   88 DLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAK  161 (238)
T ss_pred             eCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcC
Confidence            88999987764455555   7889999999874 334444422333333332   2368999999999986543

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.63  E-value=0.00034  Score=52.80  Aligned_cols=89  Identities=17%  Similarity=0.141  Sum_probs=53.6

Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHH----HHHHHHHH
Q 031970           16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA----QGEELRKQ   91 (150)
Q Consensus        16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~----~~~~~~~~   91 (150)
                      .+..+|.++++-+..   +-+++ ..+...+.    ++|.++|.||+|+......        .....    ....+...
T Consensus       144 i~~~aD~i~vv~~~~---~~~el-~~~~~~l~----~~~~ivv~NK~Dl~~~~~~--------~~~~~~~~~~l~~l~~~  207 (300)
T TIGR00750       144 IANMADTFVVVTIPG---TGDDL-QGIKAGLM----EIADIYVVNKADGEGATNV--------TIARLMLALALEEIRRR  207 (300)
T ss_pred             HHHhhceEEEEecCC---ccHHH-HHHHHHHh----hhccEEEEEcccccchhHH--------HHHHHHHHHHHhhcccc
Confidence            456678888885443   33343 34444343    5788999999998754210        00000    01111111


Q ss_pred             -cCC-cEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           92 -IGA-SYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        92 -~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                       .++ .+++++||+++.|++++++.+.+...
T Consensus       208 ~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       208 EDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             ccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence             122 26899999999999999999988643

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd01882 BMS1 Bms1

Probab=97.63  E-value=0.00021  Score=51.69  Aligned_cols=92  Identities=17%  Similarity=0.086  Sum_probs=53.2

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCCcccccccccCCCCCCcc
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      ||||.-  ..+. ...+.+|++++|+|.+.......  ..+...+...  +.|. ++|.||+|+.+....       ..-
T Consensus        89 DtPg~~--~~~l-~~ak~aDvVllviDa~~~~~~~~--~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~-------~~~  154 (225)
T cd01882          89 ECPNDI--NAMI-DIAKVADLVLLLIDASFGFEMET--FEFLNILQVH--GFPRVMGVLTHLDLFKKNKT-------LRK  154 (225)
T ss_pred             eCCchH--HHHH-HHHHhcCEEEEEEecCcCCCHHH--HHHHHHHHHc--CCCeEEEEEeccccCCcHHH-------HHH
Confidence            777743  1222 23578999999999987555443  2344444432  5775 459999998643210       000


Q ss_pred             CHHHHHH-HHH-HcCCcEEEEeccCCCCC
Q 031970           81 TTAQGEE-LRK-QIGASYYIECSSKTQQN  107 (150)
Q Consensus        81 ~~~~~~~-~~~-~~~~~~~~~~Sa~~~~~  107 (150)
                      ....+.. +.. .....+++.+||++...
T Consensus       155 ~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         155 TKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             HHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence            1223322 221 23446899999998744

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.61  E-value=0.00021  Score=49.73  Aligned_cols=45  Identities=18%  Similarity=0.128  Sum_probs=30.8

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970           21 DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus        21 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      |++++|.|+.++.+..+  +.+.+.+.....+.|+|+|.||+|+.+.
T Consensus         1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~~~kp~IlVlNK~DL~~~   45 (172)
T cd04178           1 DVILEVLDARDPLGCRC--PQVEEAVLQAGGNKKLVLVLNKIDLVPK   45 (172)
T ss_pred             CEEEEEEECCCCCCCCC--HHHHHHHHhccCCCCEEEEEehhhcCCH
Confidence            78999999998754433  2344442211236899999999999653

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=97.60  E-value=0.00031  Score=54.38  Aligned_cols=110  Identities=19%  Similarity=0.229  Sum_probs=64.6

Q ss_pred             CCCCcccccc--cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc-------
Q 031970            2 NVIGQEDYNR--LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA-------   72 (150)
Q Consensus         2 Dt~G~e~~~~--l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~-------   72 (150)
                      ||.|+|.|.+  ++-..=+..|-.+++..+++..+---- +.+--.+.   -+.|+|++.||+|+..+.....       
T Consensus       207 DtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tk-EHLgi~~a---~~lPviVvvTK~D~~~ddr~~~v~~ei~~  282 (527)
T COG5258         207 DTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTK-EHLGIALA---MELPVIVVVTKIDMVPDDRFQGVVEEISA  282 (527)
T ss_pred             ecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhh-Hhhhhhhh---hcCCEEEEEEecccCcHHHHHHHHHHHHH
Confidence            8999999865  334455578999999999986544321 22211221   2799999999999987643100       


Q ss_pred             --CCCCCCc-------cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHH
Q 031970           73 --DHPGLVP-------VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA  115 (150)
Q Consensus        73 --~~~~~~~-------v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  115 (150)
                        +-.+..+       .....+.......+..|++.+|+.+++|++-+.+.+
T Consensus       283 ~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f  334 (527)
T COG5258         283 LLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF  334 (527)
T ss_pred             HHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence              0000000       000111111122235789999999999987655444

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=97.57  E-value=0.00023  Score=57.34  Aligned_cols=102  Identities=15%  Similarity=0.136  Sum_probs=64.7

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChh---hHH---HHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCC
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SYE---NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP   75 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~---s~~---~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~   75 (150)
                      |+||+.+|....-.....||.+++|.|++...   .|+   .. ++....++. ..-.-+|++.||.|+.+=...     
T Consensus       261 DaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQt-rEha~llr~-Lgi~qlivaiNKmD~V~Wsq~-----  333 (603)
T KOG0458|consen  261 DAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQT-REHALLLRS-LGISQLIVAINKMDLVSWSQD-----  333 (603)
T ss_pred             cCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCch-HHHHHHHHH-cCcceEEEEeecccccCccHH-----
Confidence            99999999988888888999999999998531   111   11 222222222 223568999999998763221     


Q ss_pred             CCCccCHHHHHHHH-HHcCC----cEEEEeccCCCCCHHHH
Q 031970           76 GLVPVTTAQGEELR-KQIGA----SYYIECSSKTQQNVKAV  111 (150)
Q Consensus        76 ~~~~v~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i~~~  111 (150)
                      ...+ ....+..+. +..|+    ..|++||+..|+|+...
T Consensus       334 RF~e-Ik~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  334 RFEE-IKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             HHHH-HHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            0011 112223333 44443    26999999999998776

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=97.56  E-value=0.00035  Score=53.30  Aligned_cols=109  Identities=18%  Similarity=0.217  Sum_probs=73.1

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |+||+-+|-...-..-...|++|+|...+|   |++-++++     ..++. .-..+++..||.|+..+..       ..
T Consensus       123 DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlL-----LArQV-GV~~ivvfiNKvD~V~d~e-------~l  189 (449)
T KOG0460|consen  123 DCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLL-----LARQV-GVKHIVVFINKVDLVDDPE-------ML  189 (449)
T ss_pred             CCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHH-----HHHHc-CCceEEEEEecccccCCHH-------HH
Confidence            899999998766666677899999999999   45555541     22222 2245788899999986542       23


Q ss_pred             ccCHHHHHHHHHHcCC----cEEEEeccC---CCC-------CHHHHHHHHHHHHhCCC
Q 031970           79 PVTTAQGEELRKQIGA----SYYIECSSK---TQQ-------NVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~----~~~~~~Sa~---~~~-------~i~~~~~~l~~~~~~~~  123 (150)
                      ++..-+++++...+++    .|++.=||+   .+.       .|.++++.+-.++..|.
T Consensus       190 eLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~  248 (449)
T KOG0460|consen  190 ELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPE  248 (449)
T ss_pred             HHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcc
Confidence            3455577788888875    456665554   342       26677777777776653

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=97.50  E-value=7.7e-05  Score=61.08  Aligned_cols=61  Identities=20%  Similarity=0.278  Sum_probs=51.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR   65 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~   65 (150)
                      .|||||-.|..-....++-+|++++|+|+...-+++-  +.+++..-+.  +.|+.+|.||.|..
T Consensus       202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt--Er~ikhaiq~--~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT--ERIIKHAIQN--RLPIVVVINKVDRL  262 (971)
T ss_pred             ecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH--HHHHHHHHhc--cCcEEEEEehhHHH
Confidence            4999999999988889999999999999999888875  4555544443  79999999999964

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=97.40  E-value=0.0043  Score=47.28  Aligned_cols=97  Identities=22%  Similarity=0.305  Sum_probs=69.8

Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhh-------------------------------C--------------------
Q 031970           22 VFVLAFSLVSRASYENVLKKWIPELQHY-------------------------------S--------------------   50 (150)
Q Consensus        22 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~-------------------------------~--------------------   50 (150)
                      +||++.|+++|.+.-+-++.|.+-+.++                               .                    
T Consensus       130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l  209 (473)
T KOG3905|consen  130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL  209 (473)
T ss_pred             EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence            7899999999976655568887665543                               0                    


Q ss_pred             -----------CCCCEEEEeeCCCcccc----cccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHH
Q 031970           51 -----------PGVPVVLVGTKLDLRED----KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA  115 (150)
Q Consensus        51 -----------~~~piilv~nK~D~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  115 (150)
                                 -++|+++|.+|+|....    ..+...|   --.....++.||-.+|. ..+.+|++...|++-+...|
T Consensus       210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDeh---fdfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidllyKYi  285 (473)
T KOG3905|consen  210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEH---FDFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLYKYI  285 (473)
T ss_pred             cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHH---HHHHHHHHHHHHHHcCc-eeEEeecccccchHHHHHHH
Confidence                       03899999999998432    1110000   00122466788999996 89999999999999999999


Q ss_pred             HHHHhCC
Q 031970          116 IKVVIKP  122 (150)
Q Consensus       116 ~~~~~~~  122 (150)
                      ++.+...
T Consensus       286 vhr~yG~  292 (473)
T KOG3905|consen  286 VHRSYGF  292 (473)
T ss_pred             HHHhcCc
Confidence            9988654

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=97.37  E-value=0.0018  Score=45.60  Aligned_cols=113  Identities=19%  Similarity=0.185  Sum_probs=68.4

Q ss_pred             CCCCCcccccc--------cc---cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCccc
Q 031970            1 MNVIGQEDYNR--------LR---PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP---GVPVVLVGTKLDLRE   66 (150)
Q Consensus         1 wDt~G~e~~~~--------l~---~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~D~~~   66 (150)
                      .||||-.+...        +.   .....++|++|+|.|+.+ .+-++  ...++.+.+..+   -.++++|.|+.|...
T Consensus        54 iDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~  130 (196)
T cd01852          54 IDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLE  130 (196)
T ss_pred             EECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccC
Confidence            48999654321        11   123467899999999987 44333  344555555433   268999999999765


Q ss_pred             ccccccCCCCCCccCHHHHHHHHHHcCCcEEEEec-----cCCCCCHHHHHHHHHHHHhC
Q 031970           67 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS-----SKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S-----a~~~~~i~~~~~~l~~~~~~  121 (150)
                      ......    -..-.......+.+..+. .+...+     +..+.++.++++.+.+.+.+
T Consensus       131 ~~~~~~----~~~~~~~~l~~l~~~c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         131 GGTLED----YLENSCEALKRLLEKCGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             CCcHHH----HHHhccHHHHHHHHHhCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            421100    000012455666666664 444443     45678899999999888875

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=97.36  E-value=0.00018  Score=59.91  Aligned_cols=62  Identities=24%  Similarity=0.318  Sum_probs=50.2

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      |||||-+|..-....++-.|++++|+|+......+.. .-| +...+.  ++|.+++.||.|....
T Consensus        82 DTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~-rqa~~~--~vp~i~fiNKmDR~~a  143 (697)
T COG0480          82 DTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVW-RQADKY--GVPRILFVNKMDRLGA  143 (697)
T ss_pred             CCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHH-HHHhhc--CCCeEEEEECcccccc
Confidence            9999999999999999999999999999987666553 334 333332  7999999999997543

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=97.36  E-value=0.00026  Score=56.06  Aligned_cols=108  Identities=17%  Similarity=0.086  Sum_probs=65.9

Q ss_pred             CCCCccc-ccccc--------cccccCCcEEEEEEeC--CChhhHHHHHHHHHHHHhhhC-------CCCCEEEEeeCCC
Q 031970            2 NVIGQED-YNRLR--------PLSYRGADVFVLAFSL--VSRASYENVLKKWIPELQHYS-------PGVPVVLVGTKLD   63 (150)
Q Consensus         2 Dt~G~e~-~~~l~--------~~~~~~ad~~i~v~d~--~~~~s~~~~~~~~~~~i~~~~-------~~~piilv~nK~D   63 (150)
                      ||||..+ -....        +..+..||++++|+|+  ++..+-..+ .+.+.......       ...|++++.||.|
T Consensus       322 DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i-~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D  400 (531)
T KOG1191|consen  322 DTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKI-ARILETEGVGLVVIVNKMEKQRIILVANKSD  400 (531)
T ss_pred             eccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHH-HHHHHHhccceEEEeccccccceEEEechhh
Confidence            8999766 22222        2356789999999999  443333333 34444433221       1379999999999


Q ss_pred             cccccccccCCCCCCccCHHHHHHHHHHc---CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           64 LREDKHYLADHPGLVPVTTAQGEELRKQI---GASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        64 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      +...-..          .......+....   ......++|+++++|++.+.+.+.+...
T Consensus       401 ~~s~~~~----------~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~  450 (531)
T KOG1191|consen  401 LVSKIPE----------MTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVE  450 (531)
T ss_pred             ccCcccc----------ccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHH
Confidence            9876221          111111111111   1224667999999999999999887764

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.32  E-value=0.00032  Score=52.83  Aligned_cols=108  Identities=15%  Similarity=0.143  Sum_probs=71.4

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCC
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVS----RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~----~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      |+||++-.-...-..-.=.|++++++..+.    |.+-+++ ...  ++.+.   ..++++-||+|+..+.....     
T Consensus       131 DCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL-aav--eiM~L---khiiilQNKiDli~e~~A~e-----  199 (466)
T KOG0466|consen  131 DCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL-AAV--EIMKL---KHIIILQNKIDLIKESQALE-----  199 (466)
T ss_pred             cCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH-HHH--HHhhh---ceEEEEechhhhhhHHHHHH-----
Confidence            677777543322222223478888887774    5666665 222  34433   57999999999987654211     


Q ss_pred             CccCHHHHHHHHHHcC--CcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           78 VPVTTAQGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        78 ~~v~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                         ..++++.|.+...  ..|++++||.-+.||+-+.+.+++++..+.
T Consensus       200 ---q~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv  244 (466)
T KOG0466|consen  200 ---QHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV  244 (466)
T ss_pred             ---HHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence               2244555555432  248999999999999999999999997654

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.27  E-value=0.00039  Score=44.73  Aligned_cols=55  Identities=18%  Similarity=0.300  Sum_probs=36.2

Q ss_pred             CCCCCcccc----------cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeC
Q 031970            1 MNVIGQEDY----------NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK   61 (150)
Q Consensus         1 wDt~G~e~~----------~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK   61 (150)
                      +||||...-          ....+. +..+|++++|+|..++..-..  ..+++.++   .+.|+++|.||
T Consensus        52 vDtpG~~~~~~~~~~~~~~~~~~~~-~~~~d~ii~vv~~~~~~~~~~--~~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   52 VDTPGINDGESQDNDGKEIRKFLEQ-ISKSDLIIYVVDASNPITEDD--KNILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             EESSSCSSSSHHHHHHHHHHHHHHH-HCTESEEEEEEETTSHSHHHH--HHHHHHHH---TTSEEEEEEES
T ss_pred             EeCCCCcccchhhHHHHHHHHHHHH-HHHCCEEEEEEECCCCCCHHH--HHHHHHHh---cCCCEEEEEcC
Confidence            599995421          122233 378999999999888433222  34555553   47899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=97.27  E-value=0.00065  Score=52.15  Aligned_cols=120  Identities=20%  Similarity=0.185  Sum_probs=73.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChh--hHHH-----H--HHHHHHHHhhhC--CCCCEEEEeeCCCcccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA--SYEN-----V--LKKWIPELQHYS--PGVPVVLVGTKLDLREDKH   69 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~--s~~~-----~--~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~   69 (150)
                      +|++||..-+.=|-+.+.+++++|||.+++.-.  .+++     .  .-.+.+.|-.+.  .+.++||..||.|+..+..
T Consensus       200 ~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi  279 (354)
T KOG0082|consen  200 FDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKI  279 (354)
T ss_pred             EeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHh
Confidence            599999988888899999999999999998521  1111     1  012233333221  4799999999999876532


Q ss_pred             ccc------CCCCCCccCHHHHHHHHH-----H-----cCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           70 YLA------DHPGLVPVTTAQGEELRK-----Q-----IGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        70 ~~~------~~~~~~~v~~~~~~~~~~-----~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ...      ...... -..+.+..+.+     .     ..+ -...+.|.+-.+|..+|..+...++..
T Consensus       280 ~~~~~~~~Fpdy~G~-~~~~~a~~yI~~kF~~l~~~~~k~i-y~h~T~AtDT~nv~~vf~av~d~Ii~~  346 (354)
T KOG0082|consen  280 KKVPLTDCFPDYKGV-NTYEEAAKYIRKKFEELNKNKDKKI-YVHFTCATDTQNVQFVFDAVTDTIIQN  346 (354)
T ss_pred             ccCchhhhCcCCCCC-CChHHHHHHHHHHHHHHhcccCCcc-eEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence            100      011111 11222222211     1     122 345668888999999999999888754

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=97.26  E-value=0.0008  Score=53.66  Aligned_cols=95  Identities=13%  Similarity=0.075  Sum_probs=67.3

Q ss_pred             CcEEEEEEeCCChh--hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031970           20 ADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY   97 (150)
Q Consensus        20 ad~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   97 (150)
                      ..+|+++.|++..-  |.... -.++..|+..+.|.|.|+|.||+|+......        .-..+++.+....-+..++
T Consensus       248 raaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~edL--------~~~~~~ll~~~~~~~~v~v  318 (620)
T KOG1490|consen  248 RSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRPEDL--------DQKNQELLQTIIDDGNVKV  318 (620)
T ss_pred             hhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecccccCcccc--------CHHHHHHHHHHHhccCceE
Confidence            45789999998743  44443 5677788888889999999999998765431        0022233333333332489


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           98 IECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        98 ~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      +++|..+.+||.++-...+..++...
T Consensus       319 ~~tS~~~eegVm~Vrt~ACe~LLa~R  344 (620)
T KOG1490|consen  319 VQTSCVQEEGVMDVRTTACEALLAAR  344 (620)
T ss_pred             EEecccchhceeeHHHHHHHHHHHHH
Confidence            99999999999999998888776543

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.26  E-value=0.0012  Score=50.56  Aligned_cols=111  Identities=18%  Similarity=0.229  Sum_probs=64.5

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChh---hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~---s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |+||+...-...--.-.=-|..++|+|+....   +.+-+   ++.++..    ...++|.||+|...+..-       .
T Consensus        76 DCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcL---iig~~~c----~klvvvinkid~lpE~qr-------~  141 (522)
T KOG0461|consen   76 DCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECL---IIGELLC----KKLVVVINKIDVLPENQR-------A  141 (522)
T ss_pred             eCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhh---hhhhhhc----cceEEEEeccccccchhh-------h
Confidence            67777543222212223347889999998643   44433   2333322    357888899997765320       0


Q ss_pred             ccCHHHHHHHHH---Hc---CCcEEEEeccCCC----CCHHHHHHHHHHHHhCCCcch
Q 031970           79 PVTTAQGEELRK---QI---GASYYIECSSKTQ----QNVKAVFDAAIKVVIKPPQKQ  126 (150)
Q Consensus        79 ~v~~~~~~~~~~---~~---~~~~~~~~Sa~~~----~~i~~~~~~l~~~~~~~~~~~  126 (150)
                      +-..+...++.+   ..   +-.|++++||..|    ++|.++.+.|-..+.++....
T Consensus       142 ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~  199 (522)
T KOG0461|consen  142 SKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDE  199 (522)
T ss_pred             hHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCC
Confidence            001122222222   22   2268999999999    788888888888888775433

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.25  E-value=0.0004  Score=55.31  Aligned_cols=79  Identities=18%  Similarity=0.199  Sum_probs=56.7

Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHH
Q 031970            9 YNRLRPLSYRGADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE   87 (150)
Q Consensus         9 ~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~   87 (150)
                      |+.||+ .+..+|++|.+.|+.+|--|... ++.|+.++.   +.+..+|++||.||....            ......+
T Consensus       165 WRQLWR-VlErSDivvqIVDARnPllfr~~dLe~Yvke~d---~~K~~~LLvNKaDLl~~~------------qr~aWa~  228 (562)
T KOG1424|consen  165 WRQLWR-VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD---PSKANVLLVNKADLLPPE------------QRVAWAE  228 (562)
T ss_pred             HHHHHH-HHhhcceEEEEeecCCccccCChhHHHHHhccc---cccceEEEEehhhcCCHH------------HHHHHHH
Confidence            444454 46789999999999998766432 244444443   457789999999998654            3456667


Q ss_pred             HHHHcCCcEEEEeccCC
Q 031970           88 LRKQIGASYYIECSSKT  104 (150)
Q Consensus        88 ~~~~~~~~~~~~~Sa~~  104 (150)
                      +....++ ++++.||..
T Consensus       229 YF~~~ni-~~vf~SA~~  244 (562)
T KOG1424|consen  229 YFRQNNI-PVVFFSALA  244 (562)
T ss_pred             HHHhcCc-eEEEEeccc
Confidence            7888886 888889887

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.24  E-value=0.00057  Score=52.17  Aligned_cols=90  Identities=24%  Similarity=0.167  Sum_probs=61.3

Q ss_pred             cccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHH
Q 031970            8 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE   87 (150)
Q Consensus         8 ~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~   87 (150)
                      ++.......+..+|.++-|.|+.+|.+....      .+.+...+.|.++|+||.|+....            ......+
T Consensus        23 k~~~~~~~~~~~~d~vvevvDar~P~~s~~~------~l~~~v~~k~~i~vlNK~DL~~~~------------~~~~W~~   84 (322)
T COG1161          23 KAKRQLKEVLKSVDVVVEVVDARDPLGTRNP------ELERIVKEKPKLLVLNKADLAPKE------------VTKKWKK   84 (322)
T ss_pred             HHHHHHHHhcccCCEEEEEEeccccccccCc------cHHHHHccCCcEEEEehhhcCCHH------------HHHHHHH
Confidence            4455556678899999999999999866543      333333467779999999998653            2334444


Q ss_pred             HHHHc-CCcEEEEeccCCCCCHHHHHHHHH
Q 031970           88 LRKQI-GASYYIECSSKTQQNVKAVFDAAI  116 (150)
Q Consensus        88 ~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~  116 (150)
                      +.... +. ..+.++++.+.+...+...+.
T Consensus        85 ~~~~~~~~-~~~~v~~~~~~~~~~i~~~~~  113 (322)
T COG1161          85 YFKKEEGI-KPIFVSAKSRQGGKKIRKALE  113 (322)
T ss_pred             HHHhcCCC-ccEEEEeecccCccchHHHHH
Confidence            44444 43 677888888888777775333

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=97.20  E-value=0.0012  Score=49.15  Aligned_cols=117  Identities=15%  Similarity=0.155  Sum_probs=66.5

Q ss_pred             CCCCccc-c--cc---cccccccC--CcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc
Q 031970            2 NVIGQED-Y--NR---LRPLSYRG--ADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY   70 (150)
Q Consensus         2 Dt~G~e~-~--~~---l~~~~~~~--ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~   70 (150)
                      |||||-+ |  +.   ++...+..  .-+++++.|.-.   |.+|=.- --|.-.|.- .-..|+|+|.||+|+....-.
T Consensus       122 DTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSN-MlYAcSily-ktklp~ivvfNK~Dv~d~~fa  199 (366)
T KOG1532|consen  122 DTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSN-MLYACSILY-KTKLPFIVVFNKTDVSDSEFA  199 (366)
T ss_pred             cCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHH-HHHHHHHHH-hccCCeEEEEecccccccHHH
Confidence            8999875 2  21   22223332  346777777643   4555322 122222221 136999999999998765321


Q ss_pred             -------------cc--CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           71 -------------LA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        71 -------------~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                                   .+  .+.=..++...+...+-..|+-...+-+||.+|.|.+++|..+-...-
T Consensus       200 ~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd  264 (366)
T KOG1532|consen  200 LEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD  264 (366)
T ss_pred             HHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence                         00  000011123333333444454457889999999999999998877664

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=97.09  E-value=0.00067  Score=52.99  Aligned_cols=119  Identities=17%  Similarity=0.212  Sum_probs=70.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhh-hCCCCCEEEEeeCCCcccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQH-YSPGVPVVLVGTKLDLREDKH   69 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~----------~s~~~~~~~~~~~i~~-~~~~~piilv~nK~D~~~~~~   69 (150)
                      +|++||...+.-|..++.+++++|+|.++++-          ..+.+.+.-|-..... ...+.|+||+.||.|+.....
T Consensus       241 ~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~Kl  320 (389)
T PF00503_consen  241 IDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEKL  320 (389)
T ss_dssp             EEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHHT
T ss_pred             ecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHHc
Confidence            59999998899999999999999999998741          2233332223222222 125799999999999865432


Q ss_pred             cc----c---CCCCCC-ccCHHHHHHHHHH--------c---CCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           70 YL----A---DHPGLV-PVTTAQGEELRKQ--------I---GASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        70 ~~----~---~~~~~~-~v~~~~~~~~~~~--------~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      ..    .   .+.... +-....+..+...        .   ....+..++|.+..++..+|+.+...+
T Consensus       321 ~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i  389 (389)
T PF00503_consen  321 KKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII  389 (389)
T ss_dssp             TTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence            10    0   000011 0122333322221        1   111345788888888888888776543

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=97.01  E-value=0.011  Score=47.43  Aligned_cols=68  Identities=21%  Similarity=0.193  Sum_probs=48.9

Q ss_pred             CCEEEEeeCCCcccccccccCCCCCC---ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           53 VPVVLVGTKLDLREDKHYLADHPGLV---PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        53 ~piilv~nK~D~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      +|++||++|+|....-..  .+....   -.....++.+|-.||. .++.+|++...+++-+...|.+.+...+
T Consensus       197 ipi~VV~tksD~~~~Lek--~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi~h~l~~~~  267 (472)
T PF05783_consen  197 IPIVVVCTKSDKIETLEK--ETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYILHRLYGFP  267 (472)
T ss_pred             cceEEEEecccHHHHHhh--hcccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHHHHHhccCC
Confidence            799999999997542100  000001   1344567788888997 8889999999999999999998887654

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=97.00  E-value=0.0057  Score=47.50  Aligned_cols=107  Identities=15%  Similarity=0.206  Sum_probs=63.5

Q ss_pred             CCCCcccccccccccccC--CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc---------
Q 031970            2 NVIGQEDYNRLRPLSYRG--ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY---------   70 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~--ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~---------   70 (150)
                      |-||+.+|....-+.+.+  .|.+++|.+++...+..-  ++-+..+.-  -++|+.++.+|.|+......         
T Consensus       255 DLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT--rEHLgl~~A--L~iPfFvlvtK~Dl~~~~~~~~tv~~l~n  330 (591)
T KOG1143|consen  255 DLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT--REHLGLIAA--LNIPFFVLVTKMDLVDRQGLKKTVKDLSN  330 (591)
T ss_pred             ecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc--HHHHHHHHH--hCCCeEEEEEeeccccchhHHHHHHHHHH
Confidence            789999998866665554  678888888876443322  122222222  27999999999999765211         


Q ss_pred             ccCCCCCCc----c-CHHHHHHH---HHHcCCcEEEEeccCCCCCHHHHH
Q 031970           71 LADHPGLVP----V-TTAQGEEL---RKQIGASYYIECSSKTQQNVKAVF  112 (150)
Q Consensus        71 ~~~~~~~~~----v-~~~~~~~~---~~~~~~~~~~~~Sa~~~~~i~~~~  112 (150)
                      .-...+...    | ...++..-   ...-++.|+|.+|+.+|+|+.-+-
T Consensus       331 ll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~  380 (591)
T KOG1143|consen  331 LLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR  380 (591)
T ss_pred             HHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH
Confidence            000001000    0 11222222   333456789999999999986443

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=96.90  E-value=0.0011  Score=45.18  Aligned_cols=59  Identities=12%  Similarity=0.081  Sum_probs=42.4

Q ss_pred             CCCCCcccc----cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCC
Q 031970            1 MNVIGQEDY----NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL   62 (150)
Q Consensus         1 wDt~G~e~~----~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~   62 (150)
                      .||||....    ..++..|+..+|++|+|.++++..+-.+. ..+.......  ...+++|.||.
T Consensus       106 vDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~--~~~~i~V~nk~  168 (168)
T PF00350_consen  106 VDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPD--KSRTIFVLNKA  168 (168)
T ss_dssp             EEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTT--CSSEEEEEE-G
T ss_pred             EeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCC--CCeEEEEEcCC
Confidence            389996542    24566788999999999999997766665 6676666654  33488998984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>smart00053 DYNc Dynamin, GTPase

Probab=96.89  E-value=0.0014  Score=48.02  Aligned_cols=53  Identities=17%  Similarity=0.101  Sum_probs=36.4

Q ss_pred             cccccccC-CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970           12 LRPLSYRG-ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus        12 l~~~~~~~-ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      +...|+++ ++++++|.|++...+-.+. ..+.+.+..  .+.|+++|.||.|....
T Consensus       154 lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~--~~~rti~ViTK~D~~~~  207 (240)
T smart00053      154 MIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDP--QGERTIGVITKLDLMDE  207 (240)
T ss_pred             HHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHH--cCCcEEEEEECCCCCCc
Confidence            45568884 5699999998764443333 344444443  26899999999998764

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.68  E-value=0.0044  Score=46.58  Aligned_cols=56  Identities=11%  Similarity=0.017  Sum_probs=39.0

Q ss_pred             CCEEEEeeCCCcccccccccCCCCCCccCHHHHH-HHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           53 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE-ELRKQIGASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        53 ~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                      .+-++|.||+|+......          ..+... .+.+.....+++++||++++|++++.++|..+
T Consensus       231 ~ADIVVLNKiDLl~~~~~----------dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNF----------DVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHH----------HHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            567899999999753111          122233 33333334589999999999999999998764

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=96.61  E-value=0.0066  Score=49.14  Aligned_cols=98  Identities=21%  Similarity=0.360  Sum_probs=72.0

Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHH-H
Q 031970           15 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-Q   91 (150)
Q Consensus        15 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~-~   91 (150)
                      .|...+|++|+||.+.+..+|+.+ +.+...+....  ...|+++++++.-......        ..+......+.+. .
T Consensus        91 Qft~wvdavIfvf~~~d~~s~q~v-~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~--------rv~~da~~r~l~~~~  161 (749)
T KOG0705|consen   91 QFCQWVDAVVFVFSVEDEQSFQAV-QALAHEMSSYRNISDLPLILVGTQDHISAKRP--------RVITDDRARQLSAQM  161 (749)
T ss_pred             hhhhhccceEEEEEeccccCHHHH-HHHHhhcccccccccchHHhhcCcchhhcccc--------cccchHHHHHHHHhc
Confidence            456678999999999999999998 77766666433  4789999998755433221        2234444444444 4


Q ss_pred             cCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           92 IGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        92 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ..+ .+|+.+|.+|-+++..|+.++.++...
T Consensus       162 krc-sy~et~atyGlnv~rvf~~~~~k~i~~  191 (749)
T KOG0705|consen  162 KRC-SYYETCATYGLNVERVFQEVAQKIVQL  191 (749)
T ss_pred             Ccc-ceeecchhhhhhHHHHHHHHHHHHHHH
Confidence            555 899999999999999999999877654

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=96.57  E-value=0.0066  Score=42.90  Aligned_cols=79  Identities=15%  Similarity=0.066  Sum_probs=51.1

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCC--CCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcC-CcEE
Q 031970           21 DVFVLAFSLVSRASYENVLKKWIPELQHYSPG--VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASYY   97 (150)
Q Consensus        21 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~--~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~   97 (150)
                      +.-|+|+|.+..+.-=          ++..|.  ..=++|.||.|+...-..          ..+.+..-++..+ -.++
T Consensus       119 ~~~v~VidvteGe~~P----------~K~gP~i~~aDllVInK~DLa~~v~~----------dlevm~~da~~~np~~~i  178 (202)
T COG0378         119 HLRVVVIDVTEGEDIP----------RKGGPGIFKADLLVINKTDLAPYVGA----------DLEVMARDAKEVNPEAPI  178 (202)
T ss_pred             ceEEEEEECCCCCCCc----------ccCCCceeEeeEEEEehHHhHHHhCc----------cHHHHHHHHHHhCCCCCE
Confidence            3778888887542110          110111  122688899999875432          4455555555543 3489


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 031970           98 IECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        98 ~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      +++|+++|+|++++++.+....
T Consensus       179 i~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         179 IFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             EEEeCCCCcCHHHHHHHHHhhc
Confidence            9999999999999998887654

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=96.51  E-value=0.014  Score=40.39  Aligned_cols=77  Identities=19%  Similarity=0.258  Sum_probs=51.8

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccC
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT   81 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~   81 (150)
                      |||+...  ......+..||.++++...+. .+...+ ..+++.+.+.  +.|+.+|.||.|....             .
T Consensus        99 Dtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~-~~~~~~l~~~--~~~~~vV~N~~~~~~~-------------~  159 (179)
T cd03110          99 DGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDL-ERAVELVRHF--GIPVGVVINKYDLNDE-------------I  159 (179)
T ss_pred             ECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHH-HHHHHHHHHc--CCCEEEEEeCCCCCcc-------------h
Confidence            7775432  223346788999999999884 355555 6666666654  5788999999986432             3


Q ss_pred             HHHHHHHHHHcCCcEEE
Q 031970           82 TAQGEELRKQIGASYYI   98 (150)
Q Consensus        82 ~~~~~~~~~~~~~~~~~   98 (150)
                      ..++.++.+.+++ +++
T Consensus       160 ~~~~~~~~~~~~~-~vl  175 (179)
T cd03110         160 AEEIEDYCEEEGI-PIL  175 (179)
T ss_pred             HHHHHHHHHHcCC-CeE
Confidence            4566677787776 543

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>KOG2484 consensus GTPase [General function prediction only]

Probab=96.43  E-value=0.0037  Score=48.59  Aligned_cols=75  Identities=12%  Similarity=0.077  Sum_probs=50.4

Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCC
Q 031970           15 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA   94 (150)
Q Consensus        15 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   94 (150)
                      ..+..+|++|.|.|+.||.+-..  ...-+.+.+..++.-.|+|.||+|+....            ..+....+.+..+-
T Consensus       142 kvve~sDVVleVlDARDPlgtR~--~~vE~~V~~~~gnKkLILVLNK~DLVPrE------------v~e~Wl~YLr~~~p  207 (435)
T KOG2484|consen  142 KVVEASDVVLEVLDARDPLGTRC--PEVEEAVLQAHGNKKLILVLNKIDLVPRE------------VVEKWLVYLRREGP  207 (435)
T ss_pred             HHHhhhheEEEeeeccCCCCCCC--hhHHHHHHhccCCceEEEEeehhccCCHH------------HHHHHHHHHHhhCC
Confidence            34567999999999999976543  23444455555678999999999998654            44556666666664


Q ss_pred             cEEEEeccC
Q 031970           95 SYYIECSSK  103 (150)
Q Consensus        95 ~~~~~~Sa~  103 (150)
                      .-.|..|..
T Consensus       208 tv~fkast~  216 (435)
T KOG2484|consen  208 TVAFKASTQ  216 (435)
T ss_pred             cceeecccc
Confidence            233444433

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=96.41  E-value=0.015  Score=47.59  Aligned_cols=61  Identities=21%  Similarity=0.287  Sum_probs=47.5

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE   66 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~   66 (150)
                      |||||-+|.--....++--|++++|+|......-+-. .-|.. ..++  ++|.|...||.|...
T Consensus       110 DTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ-~~ry--~vP~i~FiNKmDRmG  170 (721)
T KOG0465|consen  110 DTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTE-TVWRQ-MKRY--NVPRICFINKMDRMG  170 (721)
T ss_pred             cCCCceeEEEEehhhhhhccCeEEEEEcccceehhhH-HHHHH-HHhc--CCCeEEEEehhhhcC
Confidence            9999999999888899999999999998876544443 34533 3332  799999999999643

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.34  E-value=0.0083  Score=44.29  Aligned_cols=85  Identities=12%  Similarity=0.076  Sum_probs=52.0

Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcC---
Q 031970           17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG---   93 (150)
Q Consensus        17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---   93 (150)
                      ..-||.+++|.-+.-.+..+.+    ...+.+    ++=|+|.||.|......           ...++........   
T Consensus       140 ~~~aD~~v~v~~Pg~GD~iQ~~----KaGimE----iaDi~vVNKaD~~gA~~-----------~~~~l~~~l~l~~~~~  200 (266)
T PF03308_consen  140 ADMADTVVLVLVPGLGDEIQAI----KAGIME----IADIFVVNKADRPGADR-----------TVRDLRSMLHLLRERE  200 (266)
T ss_dssp             HTTSSEEEEEEESSTCCCCCTB-----TTHHH----H-SEEEEE--SHHHHHH-----------HHHHHHHHHHHCSTSC
T ss_pred             HHhcCeEEEEecCCCccHHHHH----hhhhhh----hccEEEEeCCChHHHHH-----------HHHHHHHHHhhccccc
Confidence            3458999999988766655543    222222    33478889999665433           2233333322211   


Q ss_pred             ---CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           94 ---ASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        94 ---~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                         -+|++.+||.++.||+++++.+.+...
T Consensus       201 ~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~  230 (266)
T PF03308_consen  201 DGWRPPVLKTSALEGEGIDELWEAIDEHRD  230 (266)
T ss_dssp             TSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence               158999999999999999999987553

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=96.34  E-value=0.025  Score=44.81  Aligned_cols=85  Identities=13%  Similarity=0.177  Sum_probs=55.8

Q ss_pred             ccc-CCcEEEEEE-eCC-------ChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHH
Q 031970           16 SYR-GADVFVLAF-SLV-------SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE   86 (150)
Q Consensus        16 ~~~-~ad~~i~v~-d~~-------~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~   86 (150)
                      .+. .+++.|+|. |.+       +....+   .+|+.++++.  ++|+++|.|+.|-....            ..+...
T Consensus       140 VI~dhstIgivVtTDgsi~dI~Re~y~~aE---e~~i~eLk~~--~kPfiivlN~~dp~~~e------------t~~l~~  202 (492)
T TIGR02836       140 VIQEHSTIGVVVTTDGTITDIPREDYVEAE---ERVIEELKEL--NKPFIILLNSTHPYHPE------------TEALRQ  202 (492)
T ss_pred             HHHhcCcEEEEEEcCCCccccccccchHHH---HHHHHHHHhc--CCCEEEEEECcCCCCch------------hHHHHH
Confidence            455 789989998 775       333333   5678888775  79999999999933211            334445


Q ss_pred             HHHHHcCCcEEEEeccCC--CCCHHHHHHHHHHH
Q 031970           87 ELRKQIGASYYIECSSKT--QQNVKAVFDAAIKV  118 (150)
Q Consensus        87 ~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~l~~~  118 (150)
                      .+...|+. +++.+|+..  ...|..++..+...
T Consensus       203 ~l~eky~v-pvl~v~c~~l~~~DI~~il~~vL~E  235 (492)
T TIGR02836       203 ELEEKYDV-PVLAMDVESMRESDILSVLEEVLYE  235 (492)
T ss_pred             HHHHHhCC-ceEEEEHHHcCHHHHHHHHHHHHhc
Confidence            66777886 777776654  45566666655443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=96.13  E-value=0.0071  Score=50.53  Aligned_cols=55  Identities=22%  Similarity=0.351  Sum_probs=43.8

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHH---HHHHHHHHHhhhCCCCCEEEEeeCCC
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN---VLKKWIPELQHYSPGVPVVLVGTKLD   63 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~---~~~~~~~~i~~~~~~~piilv~nK~D   63 (150)
                      |+|||-+|++......+-+|+++++.|+.....-+-   +.+.|.+       +...++|.||+|
T Consensus        78 dspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~-------~~~~~lvinkid  135 (887)
T KOG0467|consen   78 DSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE-------GLKPILVINKID  135 (887)
T ss_pred             cCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc-------cCceEEEEehhh
Confidence            999999999999999999999999999987543332   2233433       456889999999

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=96.03  E-value=0.04  Score=42.03  Aligned_cols=49  Identities=22%  Similarity=0.243  Sum_probs=39.7

Q ss_pred             CCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           53 VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        53 ~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      +|.++|.||+|+...               +....+.+..   ..+.+||+.+.|++++.+.+.+.+
T Consensus       240 ~p~l~v~NKiD~~~~---------------e~~~~l~~~~---~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         240 KPALYVVNKIDLPGL---------------EELERLARKP---NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             eeeEEEEecccccCH---------------HHHHHHHhcc---ceEEEecccCCCHHHHHHHHHHhh
Confidence            899999999998752               4444444444   678999999999999999999877

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.44  E-value=0.21  Score=36.84  Aligned_cols=118  Identities=13%  Similarity=0.211  Sum_probs=68.0

Q ss_pred             CCCCCcccccc-c--ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHh---hhCCCCCEEEEeeCCCcccccccccCC
Q 031970            1 MNVIGQEDYNR-L--RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ---HYSPGVPVVLVGTKLDLREDKHYLADH   74 (150)
Q Consensus         1 wDt~G~e~~~~-l--~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~---~~~~~~piilv~nK~D~~~~~~~~~~~   74 (150)
                      ||.|||-.|-. -  ..+.++++-+.|+|+|+.+  .+.+.+.++...+.   +..+++.+=+..-|.|-.++..-..  
T Consensus        80 ~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQd--dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kie--  155 (347)
T KOG3887|consen   80 WDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQD--DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIE--  155 (347)
T ss_pred             eecCCccccCCCccCHHHHHhccCeEEEEEechH--HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhh--
Confidence            99999986533 1  2457899999999999865  23222234433333   3346788888889999766543100  


Q ss_pred             CCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHHHHHHHHHHhCCCcc
Q 031970           75 PGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAVFDAAIKVVIKPPQK  125 (150)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  125 (150)
                       +.+.+. +....-....|.    ..|+- .+....+|-+.|..++..++.+-++
T Consensus       156 -tqrdI~-qr~~d~l~d~gle~v~vsf~L-TSIyDHSIfEAFSkvVQkLipqLpt  207 (347)
T KOG3887|consen  156 -TQRDIH-QRTNDELADAGLEKVQVSFYL-TSIYDHSIFEAFSKVVQKLIPQLPT  207 (347)
T ss_pred             -hHHHHH-HHhhHHHHhhhhccceEEEEE-eeecchHHHHHHHHHHHHHhhhchh
Confidence             000001 111111122222    13444 4455689999999999888765443

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=95.35  E-value=0.17  Score=38.33  Aligned_cols=85  Identities=13%  Similarity=0.130  Sum_probs=52.0

Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHH---HHHH----
Q 031970           17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG---EELR----   89 (150)
Q Consensus        17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~---~~~~----   89 (150)
                      ..-+|.+++|.=+--....+.    +...+.+    +-=|+|.||.|......           ...++   .+..    
T Consensus       162 ~~~aDt~~~v~~pg~GD~~Q~----iK~GimE----iaDi~vINKaD~~~A~~-----------a~r~l~~al~~~~~~~  222 (323)
T COG1703         162 ANMADTFLVVMIPGAGDDLQG----IKAGIME----IADIIVINKADRKGAEK-----------AARELRSALDLLREVW  222 (323)
T ss_pred             hhhcceEEEEecCCCCcHHHH----HHhhhhh----hhheeeEeccChhhHHH-----------HHHHHHHHHHhhcccc
Confidence            345788888876655555544    3334443    23378889999554321           11111   1111    


Q ss_pred             HHcCC-cEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           90 KQIGA-SYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        90 ~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      ...++ ++++.+||..+.|++++++.+.....
T Consensus       223 ~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~  254 (323)
T COG1703         223 RENGWRPPVVTTSALEGEGIDELWDAIEDHRK  254 (323)
T ss_pred             cccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence            11122 47899999999999999999987664

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=95.25  E-value=0.42  Score=33.30  Aligned_cols=89  Identities=12%  Similarity=0.169  Sum_probs=64.3

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031970           19 GADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY   97 (150)
Q Consensus        19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   97 (150)
                      ..|.++|++|.+..-|++.+ +.=+..+.-.. -++ +.++++-....+.-          ++...+..+++..|++ |+
T Consensus        64 rIDlIVFvinl~sk~SL~~v-e~SL~~vd~~fflGK-VCfl~t~a~~~~~~----------sv~~~~V~kla~~y~~-pl  130 (176)
T PF11111_consen   64 RIDLIVFVINLHSKYSLQSV-EASLSHVDPSFFLGK-VCFLATNAGRESHC----------SVHPNEVRKLAATYNS-PL  130 (176)
T ss_pred             eeEEEEEEEecCCcccHHHH-HHHHhhCChhhhccc-eEEEEcCCCccccc----------ccCHHHHHHHHHHhCC-CE
Confidence            46999999999999999887 55555554333 233 44454544433322          2588999999999998 99


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHh
Q 031970           98 IECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        98 ~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      +.+.-.+..+...+=+.|.+.+.
T Consensus       131 L~~~le~~~~~~~lAqRLL~~lq  153 (176)
T PF11111_consen  131 LFADLENEEGRTSLAQRLLRMLQ  153 (176)
T ss_pred             EEeecccchHHHHHHHHHHHHHH
Confidence            99988888888887777777663

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=95.24  E-value=0.1  Score=41.06  Aligned_cols=89  Identities=19%  Similarity=0.113  Sum_probs=54.1

Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 031970           17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY   96 (150)
Q Consensus        17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   96 (150)
                      +..+|++|-|.|+.||..-.-  ..+.+.+++..+-..+|+|.||+||...-           +...=+..+.+.|.. -
T Consensus       211 iDSSDVvvqVlDARDPmGTrc--~~ve~ylkke~phKHli~vLNKvDLVPtw-----------vt~~Wv~~lSkeyPT-i  276 (572)
T KOG2423|consen  211 IDSSDVVVQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIYVLNKVDLVPTW-----------VTAKWVRHLSKEYPT-I  276 (572)
T ss_pred             hcccceeEEeeeccCCccccc--HHHHHHHhhcCCcceeEEEeeccccccHH-----------HHHHHHHHHhhhCcc-e
Confidence            457899999999999874321  23344455555678899999999998643           244444555566653 2


Q ss_pred             EEEeccCCCCCHHH---HHHHHHHHH
Q 031970           97 YIECSSKTQQNVKA---VFDAAIKVV  119 (150)
Q Consensus        97 ~~~~Sa~~~~~i~~---~~~~l~~~~  119 (150)
                      -|-.|..+..|=..   ++..+.++.
T Consensus       277 AfHAsi~nsfGKgalI~llRQf~kLh  302 (572)
T KOG2423|consen  277 AFHASINNSFGKGALIQLLRQFAKLH  302 (572)
T ss_pred             eeehhhcCccchhHHHHHHHHHHhhc
Confidence            23344444455444   444444444

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=95.16  E-value=0.0097  Score=44.38  Aligned_cols=107  Identities=15%  Similarity=0.056  Sum_probs=58.4

Q ss_pred             cccccccccccccCCc---EEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCC-CCccC
Q 031970            6 QEDYNRLRPLSYRGAD---VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG-LVPVT   81 (150)
Q Consensus         6 ~e~~~~l~~~~~~~ad---~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~-~~~v~   81 (150)
                      .+++..+...|+.+.+   .++++.|++.+.---+.  ..+..+-+  .++|..+|.||+|......-....+. ...+.
T Consensus       203 ~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~--~~i~~~ge--~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~  278 (320)
T KOG2486|consen  203 PADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDN--PEIAWLGE--NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKIN  278 (320)
T ss_pred             cchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCCh--HHHHHHhh--cCCCeEEeeehhhhhhhccccccCccccceee
Confidence            4566777788887654   55666677654322221  12222222  27999999999997654321000000 00011


Q ss_pred             HHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031970           82 TAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                      ..+..+-+..-. .|++.+|+.++.|++.+...+..
T Consensus       279 f~~l~~~~f~~~-~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  279 FQGLIRGVFLVD-LPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             hhhccccceecc-CCceeeecccccCceeeeeehhh
Confidence            112212222222 36788999999999988766554

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=95.00  E-value=0.086  Score=41.23  Aligned_cols=59  Identities=25%  Similarity=0.379  Sum_probs=37.8

Q ss_pred             CCCCcccccccccccccC--CcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970            2 NVIGQEDYNRLRPLSYRG--ADVFVLAFSLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~--ad~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      |.||+|+|....-..+.+  .|...+++-.+-.   .+-+++  .+  .+.   -.+|+.+|.+|+|+-..
T Consensus       225 DLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHL--gL--ALa---L~VPVfvVVTKIDMCPA  288 (641)
T KOG0463|consen  225 DLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHL--GL--ALA---LHVPVFVVVTKIDMCPA  288 (641)
T ss_pred             eccchhhhhheeeeccccCCCCceEEEecccccceeccHHhh--hh--hhh---hcCcEEEEEEeeccCcH
Confidence            789999998766544443  6777777766642   222332  11  111   16999999999998654

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=94.72  E-value=0.061  Score=40.90  Aligned_cols=64  Identities=11%  Similarity=0.016  Sum_probs=38.0

Q ss_pred             CCCCCccccccccc-------ccc--cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCccc
Q 031970            1 MNVIGQEDYNRLRP-------LSY--RGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSP---GVPVVLVGTKLDLRE   66 (150)
Q Consensus         1 wDt~G~e~~~~l~~-------~~~--~~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~---~~piilv~nK~D~~~   66 (150)
                      |||||..+...+..       .++  .+.|++++|.+++.. .+..+  ...++.+...++   -.+.|+|.|+.|...
T Consensus        91 IDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~D--kqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991        91 IDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLD--GQVIRAITDSFGKDIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             EECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHH--HHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence            69999775432221       122  168999999665532 22121  234555554442   267999999999763

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=94.51  E-value=0.13  Score=40.09  Aligned_cols=114  Identities=16%  Similarity=0.129  Sum_probs=53.7

Q ss_pred             CCCCCccc--ccc---cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCc--ccccccccC
Q 031970            1 MNVIGQED--YNR---LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL--REDKHYLAD   73 (150)
Q Consensus         1 wDt~G~e~--~~~---l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~--~~~~~~~~~   73 (150)
                      ||.||..-  |..   +-.+-+..-|.||++.+-.  -+..++  .+...+.+.  +.|+.+|-||.|.  .+.....-.
T Consensus        91 WDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s~r--f~~ndv--~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~  164 (376)
T PF05049_consen   91 WDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISSER--FTENDV--QLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPR  164 (376)
T ss_dssp             EEE--GGGSS--HHHHHHHTTGGG-SEEEEEESSS----HHHH--HHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-ST
T ss_pred             EeCCCCCCCCCCHHHHHHHccccccCEEEEEeCCC--CchhhH--HHHHHHHHc--CCcEEEEEecccccHhhhhccCCc
Confidence            99999542  211   2234466789888876642  233333  556677765  7899999999995  111000000


Q ss_pred             CCCCCccCHHHHHHHHHH----cCC--cEEEEeccCC--CCCHHHHHHHHHHHHhC
Q 031970           74 HPGLVPVTTAQGEELRKQ----IGA--SYYIECSSKT--QQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~----~~~--~~~~~~Sa~~--~~~i~~~~~~l~~~~~~  121 (150)
                      ... .+-..+.+++.+..    .+.  +++|-+|+.+  ..+...+.+.|.+.+..
T Consensus       165 ~f~-~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~  219 (376)
T PF05049_consen  165 TFN-EEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA  219 (376)
T ss_dssp             T---HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred             ccC-HHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence            000 00122333333322    232  4788899987  35677788888776654

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.21  E-value=0.036  Score=43.17  Aligned_cols=57  Identities=16%  Similarity=0.136  Sum_probs=40.2

Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccc
Q 031970            9 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK   68 (150)
Q Consensus         9 ~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~   68 (150)
                      |....+.+...+|.+|++||+...+--.+. .+.+..++.+  +-.+-+|.||.|.++.+
T Consensus       171 F~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~--EdkiRVVLNKADqVdtq  227 (532)
T KOG1954|consen  171 FTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGH--EDKIRVVLNKADQVDTQ  227 (532)
T ss_pred             hHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCC--cceeEEEeccccccCHH
Confidence            344556778899999999999875543343 5556666544  45688999999977643

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=94.12  E-value=0.078  Score=37.95  Aligned_cols=96  Identities=21%  Similarity=0.210  Sum_probs=57.3

Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCcccccccccCCCCCCccC---HHHHHHHHH
Q 031970           17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP---GVPVVLVGTKLDLREDKHYLADHPGLVPVT---TAQGEELRK   90 (150)
Q Consensus        17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~D~~~~~~~~~~~~~~~~v~---~~~~~~~~~   90 (150)
                      ..+.+++|+|++.. .-+..+  ...++.+.+..+   -..++||.|..|.......      ...+.   ...+..+.+
T Consensus        81 ~~g~ha~llVi~~~-r~t~~~--~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~------~~~l~~~~~~~l~~li~  151 (212)
T PF04548_consen   81 SPGPHAFLLVIPLG-RFTEED--REVLELLQEIFGEEIWKHTIVVFTHADELEDDSL------EDYLKKESNEALQELIE  151 (212)
T ss_dssp             TT-ESEEEEEEETT-B-SHHH--HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTH------HHHHHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEEecC-cchHHH--HHHHHHHHHHccHHHHhHhhHHhhhccccccccH------HHHHhccCchhHhHHhh
Confidence            45789999999998 334333  233444444433   1468999998886654321      00011   134667777


Q ss_pred             HcCCcEEEEeccC------CCCCHHHHHHHHHHHHhCC
Q 031970           91 QIGASYYIECSSK------TQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        91 ~~~~~~~~~~Sa~------~~~~i~~~~~~l~~~~~~~  122 (150)
                      ..+. .|...+.+      ....+.+++..+-..+.+.
T Consensus       152 ~c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  152 KCGG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             HTTT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hcCC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence            7776 67766666      3356778887777766554

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=94.12  E-value=0.26  Score=41.16  Aligned_cols=63  Identities=14%  Similarity=0.211  Sum_probs=43.5

Q ss_pred             CCCCcc---cccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccc
Q 031970            2 NVIGQE---DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK   68 (150)
Q Consensus         2 Dt~G~e---~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~   68 (150)
                      |.||..   ...+-......+||+||+|..+-+.-+....  .++....+.  ...|.++.||+|.....
T Consensus       212 DsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek--~Ff~~vs~~--KpniFIlnnkwDasase  277 (749)
T KOG0448|consen  212 DSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK--QFFHKVSEE--KPNIFILNNKWDASASE  277 (749)
T ss_pred             cCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH--HHHHHhhcc--CCcEEEEechhhhhccc
Confidence            667744   3334445577899999999999988877764  555555543  33467888899987654

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=93.38  E-value=0.16  Score=38.95  Aligned_cols=82  Identities=18%  Similarity=0.248  Sum_probs=58.6

Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCC----EEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHH
Q 031970           17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVP----VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ   91 (150)
Q Consensus        17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~p----iilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~   91 (150)
                      +..||.++-|.|+++|..-++. ...+.-+++.. +..|    ++=|-||+|..+....            .+      .
T Consensus       255 VaeadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e------------~E------~  315 (410)
T KOG0410|consen  255 VAEADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE------------EE------K  315 (410)
T ss_pred             HhhcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc------------cc------c
Confidence            5589999999999999877775 67777777664 2233    4667888886554321            11      1


Q ss_pred             cCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           92 IGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        92 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      +   ..+.+||++|.|++++.+.+-....
T Consensus       316 n---~~v~isaltgdgl~el~~a~~~kv~  341 (410)
T KOG0410|consen  316 N---LDVGISALTGDGLEELLKAEETKVA  341 (410)
T ss_pred             C---CccccccccCccHHHHHHHHHHHhh
Confidence            1   2568899999999999998766554

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.24  E-value=0.41  Score=35.55  Aligned_cols=99  Identities=18%  Similarity=0.255  Sum_probs=64.6

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc----------------------cc---C
Q 031970           19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY----------------------LA---D   73 (150)
Q Consensus        19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~----------------------~~---~   73 (150)
                      ...++++|||.+....+..+ +.|++.-....- --++.+|||.|.+.....                      +.   +
T Consensus        78 pl~a~vmvfdlse~s~l~al-qdwl~htdinsf-dillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgis  155 (418)
T KOG4273|consen   78 PLQAFVMVFDLSEKSGLDAL-QDWLPHTDINSF-DILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGIS  155 (418)
T ss_pred             ceeeEEEEEeccchhhhHHH-Hhhccccccccc-hhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccc
Confidence            35689999999999999987 899764332111 234678999996533110                      00   0


Q ss_pred             CCCCC---------ccCHHHHHHHHHHcCCcEEEEeccCCC------------CCHHHHHHHHHHHHh
Q 031970           74 HPGLV---------PVTTAQGEELRKQIGASYYIECSSKTQ------------QNVKAVFDAAIKVVI  120 (150)
Q Consensus        74 ~~~~~---------~v~~~~~~~~~~~~~~~~~~~~Sa~~~------------~~i~~~~~~l~~~~~  120 (150)
                      +-+..         -........|+...++ .+++.+|.+.            .|++.+|..|-..+-
T Consensus       156 etegssllgsedasldirga~lewc~e~~~-efieacasn~dfd~c~~~dgdsqgverifgal~ahmw  222 (418)
T KOG4273|consen  156 ETEGSSLLGSEDASLDIRGAALEWCLEHGF-EFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW  222 (418)
T ss_pred             ccccccccccccchhhHHHHHHHHHHhcCc-eeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence            00000         1233466789999998 9999998543            589999998876553

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=93.08  E-value=0.16  Score=41.26  Aligned_cols=59  Identities=19%  Similarity=0.222  Sum_probs=43.5

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHH-HHhhhCCCCCEEEEeeCCCcc
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIP-ELQHYSPGVPVVLVGTKLDLR   65 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~-~i~~~~~~~piilv~nK~D~~   65 (150)
                      |.||+-+|++-....++=.|++++|.|.-+..-.+-  +..+. .+.+   .+..+++.||.|..
T Consensus       104 DSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT--ETVLrQA~~E---RIkPvlv~NK~DRA  163 (842)
T KOG0469|consen  104 DSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT--ETVLRQAIAE---RIKPVLVMNKMDRA  163 (842)
T ss_pred             cCCCcccchhhhhheeEeccCcEEEEEccCceEech--HHHHHHHHHh---hccceEEeehhhHH
Confidence            899999999999999999999999999988654432  22222 2222   35567788999964

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=92.94  E-value=0.4  Score=35.13  Aligned_cols=56  Identities=16%  Similarity=0.211  Sum_probs=35.8

Q ss_pred             CCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031970            4 IGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR   65 (150)
Q Consensus         4 ~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~   65 (150)
                      ||.|.|++   -..+++|.+|+|.|++-. ++.-. +++.+...+. .=.++.+|.||.|..
T Consensus       143 AGiEHfgR---g~~~~vD~vivVvDpS~~-sl~ta-eri~~L~~el-g~k~i~~V~NKv~e~  198 (255)
T COG3640         143 AGIEHFGR---GTIEGVDLVIVVVDPSYK-SLRTA-ERIKELAEEL-GIKRIFVVLNKVDEE  198 (255)
T ss_pred             cchhhhcc---ccccCCCEEEEEeCCcHH-HHHHH-HHHHHHHHHh-CCceEEEEEeeccch
Confidence            56666654   456799999999998753 33332 3333222222 127899999999944

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=92.77  E-value=0.16  Score=37.95  Aligned_cols=64  Identities=20%  Similarity=0.285  Sum_probs=44.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCCh----------hhHHHHH----HHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVL----KKWIPELQHYSPGVPVVLVGTKLDLRE   66 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~----------~s~~~~~----~~~~~~i~~~~~~~piilv~nK~D~~~   66 (150)
                      +|.+||.+-+.-|-+.+.+.-++|+|...+.-          ..+++.+    .-|-+...   ..+.+|+..||.|+..
T Consensus       207 fDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL---~tisvIlFLNKqDlla  283 (379)
T KOG0099|consen  207 FDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWL---RTISVILFLNKQDLLA  283 (379)
T ss_pred             eccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHH---hhhheeEEecHHHHHH
Confidence            69999999999898999999999999988741          1111111    11222222   2578999999999865


Q ss_pred             c
Q 031970           67 D   67 (150)
Q Consensus        67 ~   67 (150)
                      .
T Consensus       284 e  284 (379)
T KOG0099|consen  284 E  284 (379)
T ss_pred             H
Confidence            4

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=92.65  E-value=0.23  Score=39.11  Aligned_cols=103  Identities=17%  Similarity=0.118  Sum_probs=63.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY   70 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~----------~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~   70 (150)
                      .|+||+-.|-...--...+||..++|.++...          ++-+++      .+.+...-...|++.||.|.+...-.
T Consensus       162 LDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha------~Lakt~gv~~lVv~vNKMddPtvnWs  235 (501)
T KOG0459|consen  162 LDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHA------MLAKTAGVKHLIVLINKMDDPTVNWS  235 (501)
T ss_pred             eccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHH------HHHHhhccceEEEEEEeccCCccCcc
Confidence            48889888877555567789999999888532          222322      22332334678899999997654310


Q ss_pred             ccCCCCCCccCHHHHHHHHHHcCC-----cEEEEeccCCCCCHHHHHH
Q 031970           71 LADHPGLVPVTTAQGEELRKQIGA-----SYYIECSSKTQQNVKAVFD  113 (150)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  113 (150)
                          .+.-....+....+.+..+.     ..++++|..+|.++.+...
T Consensus       236 ----~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  236 ----NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             ----hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence                00000122334444443332     3589999999999988765

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=92.43  E-value=0.85  Score=34.10  Aligned_cols=59  Identities=24%  Similarity=0.417  Sum_probs=44.7

Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCC
Q 031970           16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA   94 (150)
Q Consensus        16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   94 (150)
                      .+.+||.+|+|-.+|- ..+.++ ...++.....  ++|..+|.||.+..               . .++..++...++
T Consensus       182 sl~~aD~ai~VTEPTp-~glhD~-kr~~el~~~f--~ip~~iViNr~~~g---------------~-s~ie~~~~e~gi  240 (284)
T COG1149         182 SLKGADLAILVTEPTP-FGLHDL-KRALELVEHF--GIPTGIVINRYNLG---------------D-SEIEEYCEEEGI  240 (284)
T ss_pred             hhccCCEEEEEecCCc-cchhHH-HHHHHHHHHh--CCceEEEEecCCCC---------------c-hHHHHHHHHcCC
Confidence            5789999999998873 455565 6666666654  79999999999532               2 278888988887

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=92.32  E-value=0.4  Score=31.86  Aligned_cols=60  Identities=10%  Similarity=-0.026  Sum_probs=38.7

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR   65 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~   65 (150)
                      |+++..  .......+..+|.++++.+.+. .++... ...++.+.+.....++.+|.|+.+..
T Consensus        51 D~p~~~--~~~~~~~l~~aD~vviv~~~~~-~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~~  110 (139)
T cd02038          51 DTGAGI--SDNVLDFFLAADEVIVVTTPEP-TSITDA-YALIKKLAKQLRVLNFRVVVNRAESP  110 (139)
T ss_pred             ECCCCC--CHHHHHHHHhCCeEEEEcCCCh-hHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence            676642  2333467889999999999874 444443 34445554433456788999998743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=92.02  E-value=0.49  Score=34.86  Aligned_cols=65  Identities=11%  Similarity=-0.004  Sum_probs=38.7

Q ss_pred             CCCCCcccccc---c-------cccccc--CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCc
Q 031970            1 MNVIGQEDYNR---L-------RPLSYR--GADVFVLAFSLVSR-ASYENVLKKWIPELQHYSP---GVPVVLVGTKLDL   64 (150)
Q Consensus         1 wDt~G~e~~~~---l-------~~~~~~--~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~---~~piilv~nK~D~   64 (150)
                      |||||-.+...   .       ...|+.  ..+++++|..++.. .+..+  ...++.+....+   -.++++|.|++|.
T Consensus        84 IDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d--~~llk~I~e~fG~~i~~~~ivV~T~~d~  161 (249)
T cd01853          84 IDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD--LPLLRAITDSFGPSIWRNAIVVLTHAAS  161 (249)
T ss_pred             EECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH--HHHHHHHHHHhChhhHhCEEEEEeCCcc
Confidence            69999765421   0       112333  57888888766643 23332  244555554332   2579999999998


Q ss_pred             ccc
Q 031970           65 RED   67 (150)
Q Consensus        65 ~~~   67 (150)
                      ...
T Consensus       162 ~~p  164 (249)
T cd01853         162 SPP  164 (249)
T ss_pred             CCC
Confidence            643

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=91.18  E-value=0.028  Score=44.35  Aligned_cols=61  Identities=16%  Similarity=0.174  Sum_probs=47.5

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE   66 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~   66 (150)
                      ||||+-+|.--.+..++--||++.|||.+.....+.+ .-|... .+  -++|-+...||.|...
T Consensus       108 dtpghvdf~leverclrvldgavav~dasagve~qtl-tvwrqa-dk--~~ip~~~finkmdk~~  168 (753)
T KOG0464|consen  108 DTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQA-DK--FKIPAHCFINKMDKLA  168 (753)
T ss_pred             cCCCcceEEEEHHHHHHHhcCeEEEEeccCCccccee-eeehhc-cc--cCCchhhhhhhhhhhh
Confidence            9999999999888899999999999999976655554 556322 11  1688888889999754

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=90.41  E-value=4.8  Score=31.09  Aligned_cols=99  Identities=10%  Similarity=0.052  Sum_probs=58.5

Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHH
Q 031970           15 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ   91 (150)
Q Consensus        15 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~   91 (150)
                      ...+.||++++|+|+..+.+..+   .+..++....   ...|--+...|.+...-..  +...+...+....+..+.+.
T Consensus       136 sv~R~ADlIiiVld~~~~~~~~~---~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i--~~t~~l~~~d~~~ir~iL~E  210 (365)
T COG1163         136 SVARNADLIIIVLDVFEDPHHRD---IIERELEDVGIRLNKRPPDVTIKKKESGGIRI--NGTGPLTHLDEDTVRAILRE  210 (365)
T ss_pred             eeeccCCEEEEEEecCCChhHHH---HHHHHHHhcCeEecCCCCceEEEEeccCCEEE--ecccccccCCHHHHHHHHHH
Confidence            46789999999999997776422   2333333322   2233333334433322111  00011122577889999999


Q ss_pred             cCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           92 IGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        92 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      |++ .--.+-......++++.+.+....
T Consensus       211 y~I-~nA~V~Ir~dvTlDd~id~l~~nr  237 (365)
T COG1163         211 YRI-HNADVLIREDVTLDDLIDALEGNR  237 (365)
T ss_pred             hCc-ccceEEEecCCcHHHHHHHHhhcc
Confidence            987 555555666778888888887653

>PHA02518 ParA-like protein; Provisional

Probab=90.38  E-value=1  Score=31.58  Aligned_cols=60  Identities=15%  Similarity=0.175  Sum_probs=36.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR--ASYENVLKKWIPELQHYSPGVPV-VLVGTKLD   63 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~--~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~D   63 (150)
                      +||||..  ..+....+..||.+|++...+..  .....+ ..++..+....++.|. .++.|+.+
T Consensus        82 iD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iv~n~~~  144 (211)
T PHA02518         82 VDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDL-VELIKARQEVTDGLPKFAFIISRAI  144 (211)
T ss_pred             EeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHH-HHHHHHHHhhCCCCceEEEEEeccC
Confidence            4888863  45556788899999999988743  233333 3344443333334554 46667765

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=89.66  E-value=1.3  Score=33.12  Aligned_cols=71  Identities=8%  Similarity=-0.006  Sum_probs=43.3

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 031970           19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI   98 (150)
Q Consensus        19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   98 (150)
                      .+|..++|.|++...  +.+  .....+.+..  -+.-+|.||.|....              ...+..+....+. |+.
T Consensus       190 ~~~~~~LVl~a~~~~--~~~--~~~~~f~~~~--~~~g~IlTKlDe~~~--------------~G~~l~~~~~~~~-Pi~  248 (272)
T TIGR00064       190 APDEVLLVLDATTGQ--NAL--EQAKVFNEAV--GLTGIILTKLDGTAK--------------GGIILSIAYELKL-PIK  248 (272)
T ss_pred             CCceEEEEEECCCCH--HHH--HHHHHHHhhC--CCCEEEEEccCCCCC--------------ccHHHHHHHHHCc-CEE
Confidence            489999999998532  222  1222333221  245688899996543              2344455556676 887


Q ss_pred             EeccCCCCCHHHHH
Q 031970           99 ECSSKTQQNVKAVF  112 (150)
Q Consensus        99 ~~Sa~~~~~i~~~~  112 (150)
                      +++  +|++++++-
T Consensus       249 ~~~--~Gq~~~dl~  260 (272)
T TIGR00064       249 FIG--VGEKIDDLA  260 (272)
T ss_pred             EEe--CCCChHhCc
Confidence            777  777776654

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=88.10  E-value=1.3  Score=33.75  Aligned_cols=82  Identities=18%  Similarity=0.194  Sum_probs=50.2

Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 031970           16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS   95 (150)
Q Consensus        16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   95 (150)
                      -++..|++|=|=|+.-|-|-...   .+..+.   +.+|-|+|.||.||.+..+           ...-++.+... +..
T Consensus        43 ~l~~~D~iiEvrDaRiPLssrn~---~~~~~~---~~k~riiVlNK~DLad~~~-----------~k~~iq~~~~~-~~~  104 (335)
T KOG2485|consen   43 RLPLVDCIIEVRDARIPLSSRNE---LFQDFL---PPKPRIIVLNKMDLADPKE-----------QKKIIQYLEWQ-NLE  104 (335)
T ss_pred             hcccccEEEEeeccccCCccccH---HHHHhc---CCCceEEEEecccccCchh-----------hhHHHHHHHhh-ccc
Confidence            46678999999999887665542   222332   3689999999999987543           44445555444 333


Q ss_pred             EEEEeccCCC--CCHHHHHHHH
Q 031970           96 YYIECSSKTQ--QNVKAVFDAA  115 (150)
Q Consensus        96 ~~~~~Sa~~~--~~i~~~~~~l  115 (150)
                      .++..++...  .++..++..+
T Consensus       105 ~~~~~~c~~~~~~~v~~l~~il  126 (335)
T KOG2485|consen  105 SYIKLDCNKDCNKQVSPLLKIL  126 (335)
T ss_pred             chhhhhhhhhhhhccccHHHHH
Confidence            4544444433  3355544433

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=87.52  E-value=7.5  Score=26.96  Aligned_cols=86  Identities=15%  Similarity=0.209  Sum_probs=60.3

Q ss_pred             ccCCcEEEEEEeCCChh-------hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHH
Q 031970           17 YRGADVFVLAFSLVSRA-------SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR   89 (150)
Q Consensus        17 ~~~ad~~i~v~d~~~~~-------s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~   89 (150)
                      ++...+=.+++|.+|.-       -..++ ..|+..+++..+..-+++|-|-.....+.            ....+..+.
T Consensus        36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~-~~~~~~l~~~~~~~~v~IvSNsaGs~~d~------------~~~~a~~~~  102 (168)
T PF09419_consen   36 LKKKGIKALIFDKDNTLTPPYEDEIPPEY-AEWLNELKKQFGKDRVLIVSNSAGSSDDP------------DGERAEALE  102 (168)
T ss_pred             hhhcCceEEEEcCCCCCCCCCcCcCCHHH-HHHHHHHHHHCCCCeEEEEECCCCcccCc------------cHHHHHHHH
Confidence            66777778888988721       12344 67888888765544688888876443321            568888899


Q ss_pred             HHcCCcEEEEeccCCCCCHHHHHHHHH
Q 031970           90 KQIGASYYIECSSKTQQNVKAVFDAAI  116 (150)
Q Consensus        90 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~  116 (150)
                      +.+++ +++.-+++.-.+..++...+.
T Consensus       103 ~~lgI-pvl~h~~kKP~~~~~i~~~~~  128 (168)
T PF09419_consen  103 KALGI-PVLRHRAKKPGCFREILKYFK  128 (168)
T ss_pred             HhhCC-cEEEeCCCCCccHHHHHHHHh
Confidence            99997 888888888866666665553

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=87.49  E-value=6.4  Score=32.49  Aligned_cols=67  Identities=19%  Similarity=0.295  Sum_probs=46.2

Q ss_pred             HHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEE--eccCCCCCHHHHHHHHHH
Q 031970           40 KKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE--CSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        40 ~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~Sa~~~~~i~~~~~~l~~  117 (150)
                      .+-++.+++.  ++|++++.||.|...+.            ..+.+..+|...++ ++..  .=++-|.|-.++-+.+++
T Consensus       362 ~RHIenvr~F--GvPvVVAINKFd~DTe~------------Ei~~I~~~c~e~Gv-~va~~~~~~~Gg~Gai~LA~aVve  426 (557)
T PRK13505        362 ERHIENIRKF--GVPVVVAINKFVTDTDA------------EIAALKELCEELGV-EVALSEVWAKGGEGGVELAEKVVE  426 (557)
T ss_pred             HHHHHHHHHc--CCCEEEEEeCCCCCCHH------------HHHHHHHHHHHcCC-CEEEecccccCCcchHHHHHHHHH
Confidence            4444444443  79999999999976543            34678889998887 6553  345557777777777776


Q ss_pred             HHhC
Q 031970          118 VVIK  121 (150)
Q Consensus       118 ~~~~  121 (150)
                      .+.+
T Consensus       427 A~~~  430 (557)
T PRK13505        427 LIEE  430 (557)
T ss_pred             HHhc
Confidence            6653

>PRK14974 cell division protein FtsY; Provisional

Probab=86.72  E-value=2.3  Score=32.81  Aligned_cols=72  Identities=11%  Similarity=0.031  Sum_probs=42.9

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 031970           19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI   98 (150)
Q Consensus        19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   98 (150)
                      ..|..++|.|++......    .....+.+..  -+--+|.||.|....              .-.+..++...+. |+.
T Consensus       252 ~pd~~iLVl~a~~g~d~~----~~a~~f~~~~--~~~giIlTKlD~~~~--------------~G~~ls~~~~~~~-Pi~  310 (336)
T PRK14974        252 KPDLVIFVGDALAGNDAV----EQAREFNEAV--GIDGVILTKVDADAK--------------GGAALSIAYVIGK-PIL  310 (336)
T ss_pred             CCceEEEeeccccchhHH----HHHHHHHhcC--CCCEEEEeeecCCCC--------------ccHHHHHHHHHCc-CEE
Confidence            578889999997643222    2222222211  234678899997543              2333444445676 888


Q ss_pred             EeccCCCCCHHHHHH
Q 031970           99 ECSSKTQQNVKAVFD  113 (150)
Q Consensus        99 ~~Sa~~~~~i~~~~~  113 (150)
                      .++  +|++++++..
T Consensus       311 ~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        311 FLG--VGQGYDDLIP  323 (336)
T ss_pred             EEe--CCCChhhccc
Confidence            777  7888877654

>PF14331 ImcF-related_N: ImcF-related N-terminal domain

Probab=86.54  E-value=1.4  Score=32.87  Aligned_cols=48  Identities=27%  Similarity=0.243  Sum_probs=29.9

Q ss_pred             CCcEEEEEEeCCChhhH-------HHHHHHH---HHHHhhhC-CCCCEEEEeeCCCccc
Q 031970           19 GADVFVLAFSLVSRASY-------ENVLKKW---IPELQHYS-PGVPVVLVGTKLDLRE   66 (150)
Q Consensus        19 ~ad~~i~v~d~~~~~s~-------~~~~~~~---~~~i~~~~-~~~piilv~nK~D~~~   66 (150)
                      .-+|+|+++|+.+.-.-       ......+   +.++.+.. -.+||.+|.||+|+..
T Consensus        25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~   83 (266)
T PF14331_consen   25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLP   83 (266)
T ss_pred             CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCccc
Confidence            46999999999853211       1111222   22222222 3799999999999865

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=86.42  E-value=2.9  Score=32.04  Aligned_cols=71  Identities=8%  Similarity=0.035  Sum_probs=43.3

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 031970           19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI   98 (150)
Q Consensus        19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   98 (150)
                      ..+..++|.|++...  +.+ .. .....+.  --+.-+|.||.|...              ..-.+...+...+. |+.
T Consensus       232 ~p~~~~LVl~a~~g~--~~~-~~-a~~f~~~--~~~~giIlTKlD~t~--------------~~G~~l~~~~~~~~-Pi~  290 (318)
T PRK10416        232 APHEVLLVLDATTGQ--NAL-SQ-AKAFHEA--VGLTGIILTKLDGTA--------------KGGVVFAIADELGI-PIK  290 (318)
T ss_pred             CCceEEEEEECCCCh--HHH-HH-HHHHHhh--CCCCEEEEECCCCCC--------------CccHHHHHHHHHCC-CEE
Confidence            467889999998532  222 11 1222221  124568889999543              22445555666787 888


Q ss_pred             EeccCCCCCHHHHH
Q 031970           99 ECSSKTQQNVKAVF  112 (150)
Q Consensus        99 ~~Sa~~~~~i~~~~  112 (150)
                      .++  +|++++++-
T Consensus       291 ~v~--~Gq~~~Dl~  302 (318)
T PRK10416        291 FIG--VGEGIDDLQ  302 (318)
T ss_pred             EEe--CCCChhhCc
Confidence            888  778887664

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=82.62  E-value=6.6  Score=28.25  Aligned_cols=60  Identities=12%  Similarity=0.156  Sum_probs=36.6

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHH-HHHHHHhhhCCCCCEEEEeeCCCcc
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLK-KWIPELQHYSPGVPVVLVGTKLDLR   65 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~-~~~~~i~~~~~~~piilv~nK~D~~   65 (150)
                      |||+.  ...+....+..||.++++...+ ..++..+ . .....+.......++-+|.|+.|..
T Consensus       121 D~pp~--~~~~~~~~l~~ad~vii~~~~~-~~s~~~~-~~~~~~l~~~~~~~~~~~iv~n~~~~~  181 (246)
T TIGR03371       121 DVPRG--PSPITRQALAAADLVLVVVNAD-AACYATL-HQQALALFAGSGPRIGPHFLINQFDPA  181 (246)
T ss_pred             ECCCC--chHHHHHHHHhCCeEEEEeCCC-HHHHHHH-HHHHHHHhhcccccccceEEeeccCcc
Confidence            66663  2344456778899999999885 3455554 3 2222232222345677899998854

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>PTZ00258 GTP-binding protein; Provisional

Probab=82.41  E-value=2.5  Score=33.40  Aligned_cols=44  Identities=18%  Similarity=0.157  Sum_probs=28.4

Q ss_pred             CCCEEEEeeCC--CcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC
Q 031970           52 GVPVVLVGTKL--DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ  105 (150)
Q Consensus        52 ~~piilv~nK~--D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  105 (150)
                      .+|+++|+|+.  |+......          ..+.+..++...+..+++.+||+..
T Consensus       220 ~KP~iyv~N~~E~D~~~~~~~----------~~~~l~~~~~~~~~~~~v~~sa~~E  265 (390)
T PTZ00258        220 AKPMIYLVNMSEKDFIRQKNK----------WLAKIKEWVGEKGGGPIIPYSAEFE  265 (390)
T ss_pred             cCCEEEEEECchhhhcccchH----------HHHHHHHHHHhcCCCeEEEeeHHHH
Confidence            38999999999  75221111          3456666666663238899998654

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=82.29  E-value=10  Score=30.59  Aligned_cols=81  Identities=16%  Similarity=0.261  Sum_probs=51.3

Q ss_pred             EEEEEEeCCC----hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031970           22 VFVLAFSLVS----RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY   97 (150)
Q Consensus        22 ~~i~v~d~~~----~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   97 (150)
                      |+++--|.+-    ++.+..+-++.+.+++..  ++|++++.|-.+=...            -..+...++..+|+. +.
T Consensus       148 GiVVTTDGSi~dipRe~Y~eAEervI~ELk~i--gKPFvillNs~~P~s~------------et~~L~~eL~ekY~v-pV  212 (492)
T PF09547_consen  148 GIVVTTDGSITDIPRENYVEAEERVIEELKEI--GKPFVILLNSTKPYSE------------ETQELAEELEEKYDV-PV  212 (492)
T ss_pred             eEEEecCCCccCCChHHHHHHHHHHHHHHHHh--CCCEEEEEeCCCCCCH------------HHHHHHHHHHHHhCC-cE
Confidence            5555556552    455555535556666665  7899999987652222            155677788889997 88


Q ss_pred             EEeccCC--CCCHHHHHHHHHH
Q 031970           98 IECSSKT--QQNVKAVFDAAIK  117 (150)
Q Consensus        98 ~~~Sa~~--~~~i~~~~~~l~~  117 (150)
                      +++++..  ...|..++..+.-
T Consensus       213 lpvnc~~l~~~DI~~Il~~vLy  234 (492)
T PF09547_consen  213 LPVNCEQLREEDITRILEEVLY  234 (492)
T ss_pred             EEeehHHcCHHHHHHHHHHHHh
Confidence            8877654  3455555555443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=81.97  E-value=3.1  Score=34.50  Aligned_cols=68  Identities=15%  Similarity=0.174  Sum_probs=44.0

Q ss_pred             ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHH
Q 031970           11 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR   89 (150)
Q Consensus        11 ~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~   89 (150)
                      .+...|+.+.+++|+|+.-..-+.-..   .....+.+..| +.-.|+|.+|.|+.+....          .+..++++.
T Consensus       440 ~msKayM~NPNAIILCIQDGSVDAERS---nVTDLVsq~DP~GrRTIfVLTKVDlAEknlA----------~PdRI~kIl  506 (980)
T KOG0447|consen  440 SISKAYMQNPNAIILCIQDGSVDAERS---IVTDLVSQMDPHGRRTIFVLTKVDLAEKNVA----------SPSRIQQII  506 (980)
T ss_pred             HHHHHHhcCCCeEEEEeccCCcchhhh---hHHHHHHhcCCCCCeeEEEEeecchhhhccC----------CHHHHHHHH
Confidence            455679999999999986543322221   22223334333 6779999999999887554          666666665


Q ss_pred             HH
Q 031970           90 KQ   91 (150)
Q Consensus        90 ~~   91 (150)
                      ..
T Consensus       507 eG  508 (980)
T KOG0447|consen  507 EG  508 (980)
T ss_pred             hc
Confidence            44

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=81.86  E-value=8.3  Score=26.05  Aligned_cols=61  Identities=10%  Similarity=-0.080  Sum_probs=38.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE   66 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~   66 (150)
                      .||++....  .....+..+|.+|++.+.+. .+...+ ..+++.+... ......+|.|+.+...
T Consensus        68 iD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~-~~~~~~~~~~-~~~~~~iv~N~~~~~~  128 (179)
T cd02036          68 IDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDA-DRVKGLLEAL-GIKVVGVIVNRVRPDM  128 (179)
T ss_pred             EECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHH-HHHHHHHHHc-CCceEEEEEeCCcccc
Confidence            377765432  23456788999999998875 344444 5566555543 2234678999988543

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=81.30  E-value=3.9  Score=30.18  Aligned_cols=30  Identities=17%  Similarity=0.069  Sum_probs=25.7

Q ss_pred             cCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           92 IGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        92 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      -.+.|++..||+++.|+..+++.+..++..
T Consensus       238 ~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~  267 (268)
T cd04170         238 GLLVPVLCGSALTNIGVRELLDALVHLLPS  267 (268)
T ss_pred             CCEEEEEEeeCCCCcCHHHHHHHHHHhCCC
Confidence            344689999999999999999999988754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins

Probab=80.89  E-value=2.7  Score=27.01  Aligned_cols=32  Identities=19%  Similarity=0.213  Sum_probs=19.7

Q ss_pred             EeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC
Q 031970           58 VGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK  103 (150)
Q Consensus        58 v~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  103 (150)
                      ++||+|+..              ..+.+..+.+.+.-..++++||.
T Consensus         1 AaNK~D~~~--------------a~~ni~kl~~~~~~~~vVp~SA~   32 (109)
T PF08438_consen    1 AANKADLPA--------------ADENIEKLKEKYPDEPVVPTSAA   32 (109)
T ss_dssp             EEE-GGG-S---------------HHHHHHHHHHHTT-EEEEE-HH
T ss_pred             CCccccccc--------------cHhHHHHHHHhCCCCceeeccHH
Confidence            589999644              44566667777765588999986

; PDB: 1WXQ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	150
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		3e-52
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		2e-51
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		3e-51
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		4e-48
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		9e-32
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		1e-31
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		1e-31
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		1e-31
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		1e-31
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		1e-31
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		1e-31
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		1e-31
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		1e-31
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		1e-31
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		1e-31
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		2e-31
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		3e-31
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		3e-31
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		6e-31
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		7e-31
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		9e-31
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		1e-30
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		1e-30
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		1e-30
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		1e-30
1mh1_A	186	Small G-Protein Length = 186		1e-30
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		3e-30
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		3e-30
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		3e-30
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		6e-30
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-29
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-29
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-29
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		4e-29
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		9e-27
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		9e-27
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		9e-27
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		9e-27
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		1e-26
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		1e-26
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		1e-26
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		1e-26
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		1e-26
2kb0_A	178	Cdc42(T35a) Length = 178		1e-26
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		1e-26
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		1e-26
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		1e-26
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		1e-26
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		1e-26
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		1e-26
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		1e-26
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		1e-26
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		1e-26
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		1e-26
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		1e-26
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		2e-26
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		2e-26
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		2e-26
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		2e-26
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		2e-26
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		2e-26
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		2e-26
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		2e-26
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-26
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		2e-26
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		2e-26
1s1c_A	183	Crystal Structure Of The Complex Between The Human		2e-26
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		2e-26
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		2e-26
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		2e-26
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		3e-26
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		3e-26
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		5e-26
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		8e-26
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		9e-26
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		2e-25
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		2e-25
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		3e-25
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		1e-24
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		9e-20
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		1e-19
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		8e-17
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		8e-17
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		9e-17
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		5e-14
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		6e-14
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		6e-14
2efc_B	181	Ara7-GdpATVPS9A Length = 181		2e-11
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		3e-09
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		9e-09
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-08
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		2e-08
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		2e-08
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		3e-08
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		6e-08
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		7e-08
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		8e-08
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-07
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		1e-07
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		1e-07
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		1e-07
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		1e-07
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-07
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		1e-07
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		1e-07
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-07
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-07
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		3e-07
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		3e-07
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		3e-07
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		3e-07
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		4e-07
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		5e-07
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		5e-07
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		5e-07
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		8e-07
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-06
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		1e-06
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		1e-06
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		1e-06
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		1e-06
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		1e-06
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		1e-06
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		1e-06
1wq1_R	166	Ras-Rasgap Complex Length = 166		1e-06
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-06
6q21_A	171	Molecular Switch For Signal Transduction: Structura		1e-06
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		1e-06
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		1e-06
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-06
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		1e-06
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		1e-06
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		1e-06
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		1e-06
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		1e-06
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		1e-06
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		1e-06
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		1e-06
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		1e-06
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		1e-06
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		1e-06
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		1e-06
4q21_A	189	Molecular Switch For Signal Transduction: Structura		1e-06
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-06
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-06
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-06
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-06
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-06
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-06
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-06
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		2e-06
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-06
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		2e-06
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		2e-06
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		2e-06
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		2e-06
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		2e-06
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		2e-06
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		2e-06
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		2e-06
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-06
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		2e-06
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-06
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-06
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		3e-06
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		3e-06
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-06
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		3e-06
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		3e-06
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		3e-06
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		3e-06
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		3e-06
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		3e-06
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		3e-06
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		3e-06
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-06
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		4e-06
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		4e-06
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		4e-06
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-06
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		5e-06
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		6e-06
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		6e-06
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		6e-06
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		7e-06
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		8e-06
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		1e-05
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		1e-05
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		1e-05
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-05
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		1e-05
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		1e-05
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-05
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		1e-05
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		1e-05
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		1e-05
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		1e-05
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-05
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		2e-05
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-05
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-05
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-05
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		3e-05
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		4e-05
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		4e-05
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		5e-05
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		5e-05
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		5e-05
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		6e-05
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		6e-05
2bku_A	177	Kap95p:rangtp Complex Length = 177		7e-05
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		7e-05
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		8e-05
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		8e-05
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		9e-05
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		9e-05
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		9e-05
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		9e-05
1byu_A	216	Canine Gdp-Ran Length = 216		1e-04
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-04
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-04
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		2e-04
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-04
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		2e-04
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		2e-04
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-04
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		2e-04
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-04
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		2e-04
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		2e-04
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-04
3icq_B	171	Karyopherin Nuclear State Length = 171		2e-04
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		3e-04
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		3e-04
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		3e-04
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		3e-04
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		4e-04
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		5e-04
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		5e-04
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		6e-04
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		6e-04
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		6e-04
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		7e-04

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score =  200 bits (508), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 90/111 (81%), Positives = 102/111 (91%)
Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP++LVGTKLDL
Sbjct: 63  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122
Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           R+DK +  DHPG VP+TT QGEEL+K IG+  YIECSSKTQQNVKAVFDAA
Sbjct: 123 RDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAA 173

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score =  197 bits (502), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 89/114 (78%), Positives = 102/114 (89%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP+VLVGTK
Sbjct: 62  DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTK 121
Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK +  DHPG VP+TT QGEEL+K IGA  YIECSSK+Q+NVK VFDAA
Sbjct: 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAA 175

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score =  196 bits (499), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 88/114 (77%), Positives = 102/114 (89%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN+ KKW+PEL+HY+PG+P+VLVGTK
Sbjct: 60  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTK 119
Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK +L DHPG   +TTAQGEELRK IGA  Y+ECSSKTQQNVKAVFD A
Sbjct: 120 LDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTA 173

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score =  186 bits (472), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 87/114 (76%), Positives = 102/114 (89%), Gaps = 2/114 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSYRGAD+FVLAFSL+S+ASYENVLKKW+PEL+ ++P VP+VLVGTK
Sbjct: 63  DTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTK 122
Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK YLADH  +  +T+ QGEELRKQIGA+ YIECSSKTQQNVKAVFD A
Sbjct: 123 LDLRDDKGYLADHTNV--ITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTA 174

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score =  132 bits (331), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 57  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 76  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 135
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 136 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 191

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 57  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 57  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 57  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 57  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 57  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 84  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 143
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 144 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 199

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 64  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 123
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 179

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 67  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 126
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 127 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 182

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 84  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 143
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 144 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 199

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score =  131 bits (329), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DVF++ FSLVS ASYENV  KW PE++H+ P  P++LVGTK
Sbjct: 57  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTK 116
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  L K+I +  Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEA 172

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score =  130 bits (327), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DVF++ FSLVS ASYENV  KW PE++H+ P  P++LVGTK
Sbjct: 64  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTK 123
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  L K+I +  Y+ECS+ TQ+ +K VFD A
Sbjct: 124 LDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEA 179

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score =  130 bits (327), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DVF++ FSLVS ASYENV  KW PE++H+ P  P++LVGTK
Sbjct: 63  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTK 122
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  L K+I +  Y+ECS+ TQ+ +K VFD A
Sbjct: 123 LDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEA 178

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score =  129 bits (324), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  G EDY+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 57  DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score =  129 bits (323), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  G EDY+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 57  DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score =  128 bits (322), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  G EDY+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 60  DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 119
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 120 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 175

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  G EDY+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 84  DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 143
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 144 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 199

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DV ++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 57  DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DV ++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 61  DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 120
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 121 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 176

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DV ++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 57  DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 116
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 172

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score =  128 bits (321), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DV ++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 59  DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 118
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 119 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 174

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score =  127 bits (319), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/116 (52%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 57  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTK 116
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + ++IG+  Y+ECS+ TQ+ +K VFD A
Sbjct: 117 LDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEA 172

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score =  127 bits (318), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/116 (52%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 58  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTK 117
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + ++IG+  Y+ECS+ TQ+ +K VFD A
Sbjct: 118 LDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEA 173

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score =  127 bits (318), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/116 (52%), Positives = 82/116 (70%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTK
Sbjct: 58  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTK 117
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + ++IG+  Y+ECS+ TQ+ +K VFD A
Sbjct: 118 LDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEA 173

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score =  126 bits (316), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 58/116 (50%), Positives = 85/116 (73%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DVF++ FS+V+ AS++NV ++W+PEL+ Y+P VP +L+GT+
Sbjct: 72  DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQ 131
Query: 62  LDLREDKHYLADHPGL--VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           +DLR+D   LA    +   P+   QG++L K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 132 IDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 187

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score =  125 bits (313), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/116 (51%), Positives = 80/116 (68%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  G EDY+RLRPLSY   DVF++ FSLVS AS+ +V  KW PE++H+ P  P++LVGTK
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTK 268
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 269 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 324

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score =  125 bits (313), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/116 (51%), Positives = 80/116 (68%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  G EDY+RLRPLSY   DVF++ FSLVS AS+ +V  KW PE++H+ P  P++LVGTK
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTK 268
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 269 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 324

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score =  124 bits (312), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/116 (51%), Positives = 80/116 (68%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  G EDY+RLRPLSY   DVF++ FSLVS AS+ +V  KW PE++H+ P  P++LVGTK
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTK 268
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           LDLR+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD A
Sbjct: 269 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 324

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score =  123 bits (309), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/135 (48%), Positives = 85/135 (62%), Gaps = 21/135 (15%)
Query: 2   NVIGQEDYNRLRPLSY--------------RG-----ADVFVLAFSLVSRASYENVLKKW 42
           +  GQEDY+RLRPLSY              RG     ADVF++ FSLVS AS+ENV  KW
Sbjct: 59  DTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKW 118
Query: 43  IPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIEC 100
            PE++H+ P  P++LVGTKLDLR+DK  +       L P+T  QG  + K+IGA  Y+EC
Sbjct: 119 YPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 178
Query: 101 SSKTQQNVKAVFDAA 115
           S+ TQ+ +K VFD A
Sbjct: 179 SALTQRGLKTVFDEA 193

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score =  115 bits (288), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61  KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score =  115 bits (288), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT
Sbjct: 57  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 116
Query: 61  KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 117 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 173

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score =  115 bits (288), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61  KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score =  115 bits (288), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61  KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT
Sbjct: 58  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 117
Query: 61  KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 118 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 174

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61  KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61  KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score =  115 bits (288), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT
Sbjct: 63  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 122
Query: 61  KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 123 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 179

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61  KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61  KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT
Sbjct: 66  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 125
Query: 61  KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 126 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 182

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61  KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT
Sbjct: 59  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 118
Query: 61  KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 119 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 175

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT
Sbjct: 63  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 122
Query: 61  KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 123 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 179

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT
Sbjct: 59  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 118
Query: 61  KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 119 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 175

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT
Sbjct: 58  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 117
Query: 61  KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 118 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 174

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61  KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/116 (46%), Positives = 78/116 (67%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT+
Sbjct: 57  DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQ 116
Query: 62  LDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           +DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61  KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEA 172

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT
Sbjct: 60  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 119
Query: 61  KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 120 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 176

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/117 (46%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT
Sbjct: 56  FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61  KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEA 172

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 59  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118
Query: 62  LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
            DLR D+H   +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 119 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 59  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118
Query: 62  LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
            DLR D+H   +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 119 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 79/116 (68%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 59  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118
Query: 62  LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
            DLR+D+H   +   +   PV + +G ++  +I A  Y+ECS+KT++ V+ VF+ A
Sbjct: 119 KDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMA 174

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+R RPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 59  DTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118
Query: 62  LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
            DLR D+H   +   +   PV  A+G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 119 KDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 59  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118
Query: 62  LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
            DLR D+H   +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 119 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 62  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 121
Query: 62  LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
            DLR D+H   +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 122 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 177

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 61  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 120
Query: 62  LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
            DLR D+H   +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 121 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 176

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 57  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 116
Query: 62  LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
            DLR D+H   +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 117 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 172

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 59  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 118
Query: 62  LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
            DLR D+H   +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 119 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 57  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 116
Query: 62  LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
            DLR D+H   +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 117 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 172

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 61  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 120
Query: 62  LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
            DLR D+H   +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 121 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 176

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 61  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 120
Query: 62  LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
            DLR D+H   +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 121 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 176

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 60  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 119
Query: 62  LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
            DLR D+H   +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 120 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 175

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 60  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 119
Query: 62  LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
            DLR D+H   +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 120 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 175

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 63  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 122
Query: 62  LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
            DLR D+H   +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 123 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 178

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 79/116 (68%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 79  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 138
Query: 62  LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
            DLR+D+H   +   +   PV + +G ++  +I A  Y+ECS+KT++ V+ VF+ A
Sbjct: 139 KDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMA 194

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 79/116 (68%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 79  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNK 138
Query: 62  LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
            DLR+D+H   +   +   PV + +G ++  +I A  Y+ECS+KT++ V+ VF+ A
Sbjct: 139 KDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMA 194

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score =  113 bits (282), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 80/116 (68%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQ+++++LRPL Y   D+F+L FS+VS +S++NV +KW+PE++ + P  P++LVGT+
Sbjct: 74  DTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQ 133
Query: 62  LDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
            DLRED   L   D     PV     + L ++I A+ YIECS+ TQ+N+K VFDAA
Sbjct: 134 SDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAA 189

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score =  112 bits (280), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 77/117 (65%), Gaps = 2/117 (1%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  G EDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT
Sbjct: 60  FDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 119
Query: 61  KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 120 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 176

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score =  112 bits (280), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 77/117 (65%), Gaps = 2/117 (1%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  G EDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT
Sbjct: 56  FDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGT 115
Query: 61  KLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++DLR+D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD A
Sbjct: 116 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 76/116 (65%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  G EDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K
Sbjct: 62  DTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 121
Query: 62  LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
            DLR D+H   +   +   PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 122 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 177

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/116 (47%), Positives = 77/116 (66%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY  ++V ++ FS+    S ENV +KWI E+ H+  GVP++LVG K
Sbjct: 64  DTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCK 123
Query: 62  LDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           +DLR D   +      G  PVT+ +G+ +  QIGA+ Y ECS+KT   V+ VF+AA
Sbjct: 124 VDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAA 179

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score =  110 bits (275), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 76/116 (65%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW+PE++H+ P VP++LV  K
Sbjct: 79  DTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANK 138
Query: 62  LDLREDKHYLADHPGLV--PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
            DLR D+H   +   +   PV T  G  +  +I A  Y+ECS+KT++ V+ VF+ A
Sbjct: 139 KDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETA 194

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score =  108 bits (269), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/116 (43%), Positives = 74/116 (63%), Gaps = 2/116 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQ+DY+RLRPL Y  A V +L F + S  S++N+  +W PE+ H+   VP+++VG K
Sbjct: 88  DTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCK 147
Query: 62  LDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
            DLR+DK  +      GL PVT  +G+E+ + +GA  Y+ECS++   NV AVF  A
Sbjct: 148 TDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEA 203

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 92.4 bits (228), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 71/114 (62%), Gaps = 8/114 (7%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQE+Y+RLRPLSY  +DV +L F++ +R S++N+  KW PE++HY      VLVG K
Sbjct: 76  DTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLK 135
Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           +DLR+D        G   VT  +G++L +++G   YIE SS  +  +  VF+ +
Sbjct: 136 VDLRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKS 181

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 71/114 (62%), Gaps = 8/114 (7%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQE+Y+RLRPLSY  +DV +L F++ +R S++N+  KW PE++HY      VLVG K
Sbjct: 77  DTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLK 136
Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           +DLR+D        G   VT  +G++L +++G   YIE SS  +  +  VF+ +
Sbjct: 137 VDLRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKS 182

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           G   Y+ +RPLSY  +D  ++ F +    + ++VLKKW  E+Q + P   ++LVG K DL
Sbjct: 80  GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 139
Query: 65  REDKHYLADHPG--LVPVTTAQGEELRKQIGASYYIECSS-KTQQNVKAVFDAA 115
           R D   L +       PV+  QG  + KQIGA+ YIECS+ +++ +V+ +F  A
Sbjct: 140 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 193

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           G   Y+ +RPLSY  +D  ++ F +    + ++VLKKW  E+Q + P   ++LVG K DL
Sbjct: 64  GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 123
Query: 65  REDKHYLADHPG--LVPVTTAQGEELRKQIGASYYIECSS-KTQQNVKAVFDAA 115
           R D   L +       PV+  QG  + KQIGA+ YIECS+ +++ +V+ +F  A
Sbjct: 124 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 177

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 82.4 bits (202), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 67/114 (58%), Gaps = 3/114 (2%)
Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           G   Y+ +RPLSY  +D  ++ F +    + ++VLKKW  E+Q + P   ++LVG K DL
Sbjct: 85  GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 144
Query: 65  REDKHYLADHPG--LVPVTTAQGEELRKQIGASYYIECSS-KTQQNVKAVFDAA 115
           R D   L +       PV+  QG  + KQIGA+ YIECS+ +++ +V+ +F  A
Sbjct: 145 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 198

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 73.2 bits (178), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  G   Y+ +RPL Y  +D  +L F +    + ++ LKKW  E+  Y P   V+L+G K
Sbjct: 81  DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCK 140
Query: 62  LDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKT-QQNVKAVFDAA 115
            DLR D   L +  H    P++  QG  + KQ+GA  Y+E S+ T ++++ ++F  A
Sbjct: 141 TDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 197

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  G   Y+ +RPL Y  +D  +L F +    + ++ LKKW  E+  Y P   V+L+G K
Sbjct: 64  DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCK 123
Query: 62  LDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKT-QQNVKAVFDAA 115
            DLR D   L +  H    P++  QG  + KQ+GA  Y+E S+ T ++++ ++F  A
Sbjct: 124 TDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 180

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  G   Y+ +RPL Y  +D  +L F +    + ++ LKKW  E+  Y P   V+L+G K
Sbjct: 65  DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCK 124
Query: 62  LDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKT-QQNVKAVFDAA 115
            DLR D   L +  H    P++  QG  + KQ+GA  Y+E S+ T ++++ ++F  A
Sbjct: 125 TDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 181

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
           +  GQE Y+ L P+ YRGA   ++ F + ++AS+E   KKW+ ELQ   +P + + L G 
Sbjct: 67  DTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGN 125
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL + +             TA+  +   Q    +++E S+KT  NVK +F
Sbjct: 126 KSDLLDARK-----------VTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 17/119 (14%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVV 56
           +  GQE +  LR   YRGAD  +L FS+  R S+EN L  W  E  +Y+        P V
Sbjct: 62  DTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFEN-LGNWQKEFIYYADVKDPEHFPFV 120
Query: 57  LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++G K+D +ED+           VTT + +    + G   Y+E S+K   NV   F+ A
Sbjct: 121 VLGNKVD-KEDRQ----------VTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEA 168

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVV 56
           +  GQE +  LR   YRG+D  +L FS+    S++N L  W  E  +Y+        P V
Sbjct: 66  DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFV 124
Query: 57  LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++G K D++E +           V+T + +   K  G   Y E S+K   NV A F+ A
Sbjct: 125 ILGNKTDIKERQ-----------VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEA 172

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
           +  GQE +N +    YR A   +L + +  + ++++ L KW+  +  Y S    ++LVG 
Sbjct: 81  DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDD-LPKWMKMIDKYASEDAELLLVGN 139
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           KLD   D+           +T  QGE+  +QI    + E S+K   NV  +F
Sbjct: 140 KLDCETDRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVV 56
           +  GQE +  LR   YRG+D  +L FS+    S++N L  W  E  +Y+        P V
Sbjct: 62  DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFV 120
Query: 57  LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++G K+D+ E +           V+T + +   +  G   Y E S+K   NV A F+ A
Sbjct: 121 ILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 168

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVV 56
           +  GQE +  LR   YRG+D  +L FS+    S++N L  W  E  +Y+        P V
Sbjct: 64  DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFV 122
Query: 57  LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 115
           ++G K+D+ E +           V+T + +   +  G   Y E S+K   NV A F+ A
Sbjct: 123 ILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 170

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 13/113 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGT 60
           +  GQE Y  +    YRGA  F+L + + +  S+ N ++ W  +++ YS     V+LVG 
Sbjct: 78  DTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGN 136
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
           K D+ E++        +VP  T +G+ L +Q+G  ++ E S+K   +V+  F+
Sbjct: 137 KCDMEEER--------VVP--TEKGQLLAEQLGFDFF-EASAKENISVRQAFE 178

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGT 60
           +  GQE +  +    YRGA   ++ + +  R S++NV K+WI E+  Y+   V  +LVG 
Sbjct: 64  DTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNV-KQWIQEIDRYAMENVNKLLVGN 122
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL   +           VT+ +G EL    G   +IE S+K   NV+  F
Sbjct: 123 KCDLVSKR----------VVTSDEGRELADSHGIK-FIETSAKNAYNVEQAF 163

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 14/114 (12%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLK--KWIPELQHYSPGVPVVLV 58
           ++  GQE++  +R    R  + F+L FS+  R S+E + K  + I  ++      P++L+
Sbjct: 58  LDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDE-FPMILI 116
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL        DH     VT  +G++L +Q+  + Y+E S+K + NV   F
Sbjct: 117 GNKADL--------DHQR--QVTQEEGQQLARQLKVT-YMEASAKIRMNVDQAF 159

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 13/113 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGT 60
           +  GQE Y  +    YRGA  F+L + + +  S+ N ++ W  +++ YS     V+LVG 
Sbjct: 60  DTAGQERYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGN 118
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
           K D+ +++           V++ +G +L   +G  ++ E S+K   NVK  F+
Sbjct: 119 KCDMEDER----------VVSSERGRQLADHLGFEFF-EASAKDNINVKQTFE 160

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
           +  GQE Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G 
Sbjct: 62  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGN 120
Query: 61  KLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL        +E + Y  D+  L                   ++E S+KT  NV  +F
Sbjct: 121 KADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIF 161
Query: 113 DA 114
            A
Sbjct: 162 MA 163

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
           +  GQE Y R+    YRGA   +L + +    +YENV ++W+ EL+ H    + ++LVG 
Sbjct: 60  DTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGN 118
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DLR        H   VP   A+    +  +    +IE S+    NV+  F
Sbjct: 119 KSDLR--------HLRAVPTDEARAFAEKNNLS---FIETSALDSTNVEEAF 159

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
           +  GQE Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G 
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGN 119
Query: 61  KLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL        +E + Y  D+  L                   ++E S+KT  NV  +F
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIF 160
Query: 113 DA 114
            A
Sbjct: 161 MA 162

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
           +  GQE Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G 
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGN 119
Query: 61  KLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL        +E + Y  D+  L                   ++E S+KT  NV  +F
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIF 160
Query: 113 DA 114
            A
Sbjct: 161 MA 162

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
           +  GQE Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G 
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGN 119
Query: 61  KLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL        +E + Y  D+  L                   ++E S+KT  NV  +F
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIF 160
Query: 113 DA 114
            A
Sbjct: 161 MA 162

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
           +  GQE Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G 
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGN 119
Query: 61  KLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL        +E + Y  D+  L                   ++E S+KT  NV  +F
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIF 160
Query: 113 DA 114
            A
Sbjct: 161 MA 162

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
           +  GQE Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G 
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGN 119
Query: 61  KLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL        +E + Y  D+  L                   ++E S+KT  NV  +F
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIF 160
Query: 113 DA 114
            A
Sbjct: 161 MA 162

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
           +  GQE Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G 
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGN 119
Query: 61  KLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL        +E + Y  D+  L                   ++E S+KT  NV  +F
Sbjct: 120 KADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIF 160
Query: 113 DA 114
            A
Sbjct: 161 MA 162

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
           +  GQE Y  +    YRGA   +L + +    +YENV ++W+ EL+ H    + ++LVG 
Sbjct: 75  DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGN 133
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DLR        H   VP  T +     ++ G S +IE S+    NV+A F
Sbjct: 134 KSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDSTNVEAAF 174

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
           +  GQE Y  +    YRGA   +L + +    +YENV ++W+ EL+ H    + ++LVG 
Sbjct: 84  DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGN 142
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DLR        H   VP  T +     ++ G S +IE S+    NV+A F
Sbjct: 143 KSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDSTNVEAAF 183

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGT 60
           +  GQE ++ L P+ YRG+   V+ + +  + S+   LKKW+ EL+ + P  + + + G 
Sbjct: 78  DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSF-YTLKKWVKELKEHGPENIVMAIAGN 136
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL + +         VP+  A+  E  + IGA   +E S+K   N++ +F
Sbjct: 137 KCDLSDIRE--------VPLKDAK--EYAESIGA-IVVETSAKNAINIEELF 177

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 27/119 (22%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
           +  GQE Y+ L P+ YRGA   ++ + + ++ ++    K W+ ELQ   SP + + L G 
Sbjct: 63  DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARA-KTWVKELQRQASPSIVIALAGN 121
Query: 61  KLDLR-------EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL        E+    AD   L+                  ++E S+KT  NV  +F
Sbjct: 122 KADLANKRMVEYEEAQAYADDNSLL------------------FMETSAKTAMNVNDLF 162

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
           +  GQE Y+ L P+ YRGA   ++ + + +  ++    K W+ ELQ   SP + + L G 
Sbjct: 60  DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGN 118
Query: 61  KLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL        +E + Y  D+  L                   ++E S+KT  NV  +F
Sbjct: 119 KADLASKRAVEFQEAQAYADDNSLL-------------------FMETSAKTAMNVNEIF 159
Query: 113 DA 114
            A
Sbjct: 160 MA 161

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
           +  GQE Y+ L P+ YRGA   ++ + + +  ++    K W+ ELQ   SP + + L G 
Sbjct: 58  DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQRQASPNIVIALAGN 116
Query: 61  KLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL        +E + Y  D+  L                   ++E S+KT  NV  +F
Sbjct: 117 KADLASKRAVEFQEAQAYADDNSLL-------------------FMETSAKTAMNVNEIF 157
Query: 113 DA 114
            A
Sbjct: 158 MA 159

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 13/113 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGT 60
           +  GQE Y  +    YRGA  F+L + + ++ S+  V + W  +++ YS     V+LVG 
Sbjct: 77  DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGN 135
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
           K DL +++        +VP     G  L   +G  ++ E S+K   NVK VF+
Sbjct: 136 KCDLEDER--------VVP--AEDGRRLADDLGFEFF-EASAKENINVKQVFE 177

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 29/122 (23%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
           +  GQE Y+ L P  YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G 
Sbjct: 62  DTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGN 120
Query: 61  KLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL        +E + Y  D+  L                   + E S+KT  NV  +F
Sbjct: 121 KADLANKRAVDFQEAQSYADDNSLL-------------------FXETSAKTSXNVNEIF 161
Query: 113 DA 114
            A
Sbjct: 162 XA 163

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
           +  GQE +  +    YR A+  +L + +    S+   L +W+ E++ Y S  V  VLVG 
Sbjct: 81  DTAGQERFRSITQSYYRSANALILTYDITCEESF-RCLPEWLREIEQYASNKVITVLVGN 139
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K+DL E +           V+  + EE   +    YY+E S+K   NV+ +F
Sbjct: 140 KIDLAERRE----------VSQQRAEEF-SEAQDMYYLETSAKESDNVEKLF 180

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVPVVLVG 59
           +  GQE +  L    +R A  F+L F L S+ S+ NV + W+ +LQ   Y     +VL+G
Sbjct: 90  DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIG 148
Query: 60  TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV-KAV 111
            K DL + +           V   Q  EL  + G  Y+ E S+ T QNV KAV
Sbjct: 149 NKADLPDQRE----------VNERQARELADKYGIPYF-ETSAATGQNVEKAV 190

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLD 63
           GQE +  +    YRGA   +L + +    ++ N+ K+W   + +H +    ++LVG K D
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSD 119
Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           +               VT  QGE L K++G   +IE S+K   NV  +F
Sbjct: 120 METR-----------VVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 156

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 58/114 (50%), Gaps = 13/114 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGT 60
           +  GQE +  +    YR A   +L + + ++AS++N+ + W+ E+  Y+   V ++L+G 
Sbjct: 66  DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGN 124
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 114
           K+D   ++           V    GE+L K+ G   ++E S+KT  NV   F A
Sbjct: 125 KVDSAHER----------VVKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTA 167

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLD 63
           GQE +  +    YRGA   +L + +    ++ N+ K+W   + +H +    ++LVG K D
Sbjct: 78  GQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSD 136
Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           +               VT  QGE L K++G   +IE S+K   NV  +F
Sbjct: 137 METR-----------VVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 173

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
           +  G E Y  +    YRGA   +L + +    +YENV ++W+ EL+ H    + ++LVG 
Sbjct: 63  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGN 121
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DLR        H   VP  T +     ++ G S +IE S+    NV+A F
Sbjct: 122 KSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDSTNVEAAF 162

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 58/112 (51%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
           +  GQE ++ L P+ YR ++  +L + +    S++ V K W+ EL+      + + +VG 
Sbjct: 61  DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGN 119
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K+DL +++H          V+  + E   + +GA +Y   S+K  + ++ +F
Sbjct: 120 KIDLEKERH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 160

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 58/112 (51%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
           +  GQE ++ L P+ YR ++  +L + +    S++ V K W+ EL+      + + +VG 
Sbjct: 61  DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGN 119
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K+DL +++H          V+  + E   + +GA +Y   S+K  + ++ +F
Sbjct: 120 KIDLEKERH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 160

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 58/112 (51%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
           +  GQE ++ L P+ YR ++  +L + +    S++ V K W+ EL+      + + +VG 
Sbjct: 75  DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGN 133
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K+DL +++H          V+  + E   + +GA +Y   S+K  + ++ +F
Sbjct: 134 KIDLEKERH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 174

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 62  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 120
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 121 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 162

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 63  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 121
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 122 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 163

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLD 63
           GQE +  +    YRGA   +L + +    ++ N+ K+W   + +H +    ++LVG K D
Sbjct: 65  GQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSD 123
Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           +               VT  QGE L K++G   +IE S+K   NV  +F
Sbjct: 124 METR-----------VVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 160

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 61  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 119
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 120 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 161

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 61  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 119
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 120 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 161

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLD 63
           GQE +  +    YRGA   +L + +    ++ N+ K+W   + +H +    ++LVG K D
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSD 119
Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
                           VT  QGE L K++G   +IE S+K   NV  +F
Sbjct: 120 XETR-----------VVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 156

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
           +  GQE +  +    YRGA   ++ + +  + SY NV K+W+ E+  Y S  V  +LVG 
Sbjct: 64  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGN 122
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL   K        +V  TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 123 KSDLTTKK--------VVDNTTAK--EFADSLGIP-FLETSAKNATNVEQAF 163

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
           +  G E Y  +    YRGA   +L + +    +YENV ++W+ EL+ H    + ++LVG 
Sbjct: 84  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGN 142
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DLR        H   VP  T +     ++ G S +IE S+    NV+A F
Sbjct: 143 KSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDSTNVEAAF 183

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKSDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 13/113 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGT 60
           +  G E Y  +    YRGA  F+L + + +  S+ N ++ W  +++ YS     V+LVG 
Sbjct: 63  DTAGLERYRTITTAYYRGAXGFILXYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGN 121
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
           K D  +++           V++ +G +L   +G  ++ E S+K   NVK  F+
Sbjct: 122 KCDXEDER----------VVSSERGRQLADHLGFEFF-EASAKDNINVKQTFE 163

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  G EDY  +R   +R  + F+L FS+    S+      ++ I  ++     +P+++V
Sbjct: 56  LDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVV 115
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL E +         VPV  A+    + +     Y+E S+KT+ NV  VF
Sbjct: 116 GNKSDLEERRQ--------VPVEEARS---KAEEWGVQYVETSAKTRANVDKVF 158

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
           +  GQE +  +    YRGA   ++ + +  + SY NV K+W+ E+  Y S  V  +LVG 
Sbjct: 64  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGN 122
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL   K        +V  TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 123 KSDLTTKK--------VVDNTTAK--EFADSLGIP-FLETSAKNATNVEQAF 163

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
           +  G E Y  +    YRGA   +L + +    +YENV ++W+ EL+ H    + + LVG 
Sbjct: 66  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGN 124
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DLR        H   VP  T +     ++ G S +IE S+    NV+A F
Sbjct: 125 KSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDSTNVEAAF 165

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  G EDY  +R   +R  + F+L FS+    S+      ++ I  ++     +P+++V
Sbjct: 60  LDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVV 119
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL E +         VPV  A+    + +     Y+E S+KT+ NV  VF
Sbjct: 120 GNKSDLEERRQ--------VPVEEARS---KAEEWGVQYVETSAKTRANVDKVF 162

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE--NVLKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+   N+ ++ I  ++  S  VP+VLV
Sbjct: 74  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLV 132
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL          P    V T Q  EL K  G   +IE S+KT+Q V+  F
Sbjct: 133 GNKCDL----------PTRT-VDTKQAHELAKSYGIP-FIETSAKTRQGVEDAF 174

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLD 63
           GQE +  +    YRGA   +L + +    ++ N+ K+W   + +H +    ++LVG K D
Sbjct: 61  GQERFRTITTAYYRGAXGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSD 119
Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
                           VT  QGE L K++G   +IE S+K   NV  +F
Sbjct: 120 XETR-----------VVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 156

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
           +  G E Y  +    YRGA   +L + +    +YENV ++W+ EL+ H    + + LVG 
Sbjct: 60  DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGN 118
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DLR        H   VP  T +     ++ G S +IE S+    NV+A F
Sbjct: 119 KSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDSTNVEAAF 159

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  G E +  +R L  +    F L +S+ +++++ ++  L++ I  ++  +  VP++LV
Sbjct: 56  LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL +++           V   QG+ L +Q     ++E S+K++ NV  +F
Sbjct: 115 GNKCDLEDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  G E +  +R L  +    F L +S+ +++++ ++  L++ I  ++  +  VP++LV
Sbjct: 58  LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILV 116
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL +++           V   QG+ L +Q     ++E S+K++ NV  +F
Sbjct: 117 GNKCDLEDER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 57  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLV 115
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL          P    V T Q ++L +  G   +IE S+KT+Q V   F
Sbjct: 116 GNKCDL----------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHY---SPGV-PVV 56
           +  GQE +  L    YRGAD  VL + + + +S+EN+ K W  E L H    SP   P V
Sbjct: 64  DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFV 122
Query: 57  LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
           ++G K+D  E K  +++            +EL K +G       S+K   NV   F+
Sbjct: 123 ILGNKIDAEESKKIVSEKS---------AQELAKSLGDIPLFLTSAKNAINVDTAFE 170

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 57  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLV 115
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL          P    V T Q ++L +  G   +IE S+KT+Q V   F
Sbjct: 116 GNKSDL----------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 57  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLV 115
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL          P    V T Q ++L +  G   +IE S+KT+Q V   F
Sbjct: 116 GNKSDL----------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G + DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNRCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 57  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLV 115
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL          P    V T Q ++L +  G   +IE S+KT+Q V   F
Sbjct: 116 GNKSDL----------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  G E +  +R L  +    F L +S+ +++++ ++  L++ I  ++  +  VP++LV
Sbjct: 56  LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL +++           V   QG+ L +Q     ++E S+K++ NV  +F
Sbjct: 115 GNKCDLEDER----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
           +  GQE +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  +LVG 
Sbjct: 88  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGN 146
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL   K        +V  TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 147 KCDLTTKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 187

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
           +  GQE +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  +LVG 
Sbjct: 71  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGN 129
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL   K        +V  TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 130 KCDLTTKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 170

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
           +  GQE +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  +LVG 
Sbjct: 54  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGN 112
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL   K        +V  TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 113 KCDLTTKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 153

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
           +  GQE +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  +LVG 
Sbjct: 71  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGN 129
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL   K        +V  TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 130 KCDLTTKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 170

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
           +  GQE +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  +LVG 
Sbjct: 80  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGN 138
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL   K        +V  TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 139 KCDLTTKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 179

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  G E +  +R L  +    F L +S+ +++++ ++  L++ I  ++  +  VP++LV
Sbjct: 56  LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL +++           V   QG+ L +Q     ++E S+K++ NV  +F
Sbjct: 115 GNKCDLEDER----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
           +  GQE +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  +LVG 
Sbjct: 61  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGN 119
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL   K        +V  TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 120 KCDLTTKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 160

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
           +  GQE +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  +LVG 
Sbjct: 61  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGN 119
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL   K        +V  TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 120 KCDLTTKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 160

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AGRTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  G+E+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
           +  GQE +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  +LVG 
Sbjct: 63  DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGI 121
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL   K        +V  TTA+  E    +G   ++E S+K   NV+  F
Sbjct: 122 KCDLTTKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 162

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  G E+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 16/115 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQED  + R    R  + FVL + +  R S+E V  LK  + E++     V ++LV
Sbjct: 81  LDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILV 138
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT-QQNVKAVF 112
           G K DL        DH     V+T +GE+L  ++  ++Y ECS+ T + N+  +F
Sbjct: 139 GNKADL--------DHSR--QVSTEEGEKLATELACAFY-ECSACTGEGNITEIF 182

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++   QE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKXDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++   QE+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKXDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  G E+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 74  LDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLV 132
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL          P    V T Q ++L +  G   +IE S+KT+Q V   F
Sbjct: 133 GNKCDL----------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 174

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 60
           +  GQE +  L P   R + V V+ + + +  S++    KWI +++      V ++LVG 
Sbjct: 57  DTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQT-SKWIDDVRTERGSDVIIMLVGN 115
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL + +           +T  +GE+  K++    +IE S+KT  NVK +F
Sbjct: 116 KTDLADKRQ----------ITIEEGEQRAKELSV-MFIETSAKTGYNVKQLF 156

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGT 60
           +  GQE +  L P+ YRG+   ++ + +    ++ + LK W+ EL QH  P + V + G 
Sbjct: 60  DTAGQERFRALAPMYYRGSAAAIIVYDITKEETF-STLKNWVRELRQHGPPSIVVAIAGN 118
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL + +           V     ++    I A  ++E S+K   N+  +F
Sbjct: 119 KCDLTDVRE----------VMERDAKDYADSIHA-IFVETSAKNAININELF 159

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  G E+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 12/111 (10%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQE+++ +    YRGA   VL FS   R S+E  +  W  ++      +P  LV  K
Sbjct: 60  DTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFE-AISSWREKVVAEVGDIPTALVQNK 118
Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           +DL +D            +   + E L K++   +Y   S K   NV  VF
Sbjct: 119 IDLLDDS----------CIKNEEAEGLAKRLKLRFY-RTSVKEDLNVSEVF 158

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  G E+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  G E+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  G E+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+ + +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 10/112 (8%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGT 60
           +  GQE +  L P  YR A   ++ + +    S+    + W+ EL +  S  + + LVG 
Sbjct: 58  DTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGN 116
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K+D  ++        G   V   +GE+L ++ G  ++ E S+KT +NV  VF
Sbjct: 117 KIDXLQE-------GGERKVAREEGEKLAEEKGLLFF-ETSAKTGENVNDVF 160

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  G E+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 61  LDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 119
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 120 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 161

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  G E+Y+ +R    R  + F+  F++ +  S+E++   ++ I  ++  S  VP+VLV
Sbjct: 56  LDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLV 114
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL               V + Q ++L +  G   YIE S+KT+Q V+  F
Sbjct: 115 GNKCDL-----------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLD 63
           GQE +  +    YRGA   +L + + +  S++N+ + WI  + +H S  V  +++G K D
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCD 122
Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           + + +           V+  +GE+L    G   ++E S+K   NV+  F
Sbjct: 123 VNDKRQ----------VSKERGEKLALDYGIK-FMETSAKANINVENAF 160

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLD 63
           GQE +  +    YRGA   +L + + +  S++N+ + WI  + +H S  V  +++G K D
Sbjct: 66  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCD 124
Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           + + +           V+  +GE+L    G   ++E S+K   NV+  F
Sbjct: 125 VNDKRQ----------VSKERGEKLALDYGIK-FMETSAKANINVENAF 162

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGT 60
           +  GQE +  +    YRGA   +L + +  R ++ N L  W+ +  QH S  + ++L+G 
Sbjct: 76  DTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLTSWLEDARQHSSSNMVIMLIGN 134
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL   +           V   +GE   ++ G   ++E S+KT  NV+  F
Sbjct: 135 KSDLESRR----------DVKREEGEAFAREHGL-IFMETSAKTACNVEEAF 175

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQEDY  +R   +R  + F+  FS+    S+      ++ I  ++     VP +LV
Sbjct: 67  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLV 125
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL EDK         V V  A+    R +     Y+E S+KT+ NV  VF
Sbjct: 126 GNKSDL-EDKRQ-------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 168

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGT 60
           +  GQE +  +    YRGA   +L + +  R ++ N L  W+ +  QH +  + ++L+G 
Sbjct: 65  DTAGQESFRSITRSYYRGAAGALLVYDITRRDTF-NHLTTWLEDARQHSNSNMVIMLIGN 123
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL   +           V   +GE   ++ G   ++E S+KT  NV+  F
Sbjct: 124 KSDLESRR----------EVKKEEGEAFAREHGL-IFMETSAKTASNVEEAF 164

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQEDY  +R   +R  + F+  FS+    S+      ++ I  ++     VP +LV
Sbjct: 71  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLV 129
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL EDK         V V  A+    R +     Y+E S+KT+ NV  VF
Sbjct: 130 GNKSDL-EDKRQ-------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 172

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQEDY  +R   +R  + F+  FS+    S+      ++ I  ++     VP +LV
Sbjct: 59  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLV 117
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL EDK         V V  A+    R +     Y+E S+KT+ NV  VF
Sbjct: 118 GNKSDL-EDKRQ-------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 160

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQEDY  +R   +R  + F+  FS+    S+      ++ I  ++     VP +LV
Sbjct: 57  LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLV 115
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL EDK         V V  A+    +  +    Y+E S+KT+ NV  VF
Sbjct: 116 GNKSDL-EDKRQ-------VSVEEAKNRADQWNVN---YVETSAKTRANVDKVF 158

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQE Y  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K
Sbjct: 65  DTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 123
Query: 62  LDLREDK 68
           +D+++ K
Sbjct: 124 VDIKDRK 130

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGT 60
           +  GQE +  +    YRGA   ++ + +  R++Y N L  W+ + ++ + P   ++L+G 
Sbjct: 70  DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNPNTVIILIGN 128
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL   +           VT  + ++  ++ G   ++E S+KT +NV+  F
Sbjct: 129 KADLEAQR----------DVTYEEAKQFAEENGL-LFLEASAKTGENVEDAF 169

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLD 63
           GQE Y  +    YRGA   +L + +  + S+EN+ +KW+ EL+ +    + ++LVG K D
Sbjct: 66  GQERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLVGNKSD 124
Query: 64  LR 65
           L+
Sbjct: 125 LK 126

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSPGVPVVLVGT 60
           +  GQE +  L P   R +   ++ + + +R S+EN   KWI + L      V + LVG 
Sbjct: 56  DTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNERGKDVIIALVGN 114
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL +          L  VT  +G +  ++    ++ E S+K   N+K +F
Sbjct: 115 KTDLGD----------LRKVTYEEGXQKAQEYNTXFH-ETSAKAGHNIKVLF 155

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGT 60
           +  G E +  L P+ YRG+   ++ + +    ++ + LK W+ EL QH  P + V + G 
Sbjct: 61  DTAGLERFRALAPMYYRGSAAAIIVYDITKEETF-STLKNWVRELRQHGPPSIVVAIAGN 119
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL + +           V     ++    I A  ++E S+K   N+  +F
Sbjct: 120 KCDLTDVRE----------VMERDAKDYADSIHA-IFVETSAKNAININELF 160

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGT 60
           +  GQE +  +    YR A+  +LA+ +  R+S+ +V   WI +++ Y+   +  +L+G 
Sbjct: 84  DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGN 142
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL E          L  V+ A+ + L +       IE S+K   NV+  F
Sbjct: 143 KSDLSE----------LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQE +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K
Sbjct: 65  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 123
Query: 62  LDLREDK 68
           +D+++ K
Sbjct: 124 VDIKDRK 130

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQE +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K
Sbjct: 65  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 123
Query: 62  LDLREDK 68
           +D+++ K
Sbjct: 124 VDIKDRK 130

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQE +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K
Sbjct: 65  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 123
Query: 62  LDLREDK 68
           +D+++ K
Sbjct: 124 VDIKDRK 130

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 18/117 (15%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVG 59
           ++  GQE++  +R    R    F+L F++  R S+  V K +   L+       PVVLVG
Sbjct: 62  LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 121
Query: 60  TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY---YIECSSKTQQNVKAVFD 113
            K DL   +         VP + A         GAS+   Y E S+K + NV   F+
Sbjct: 122 NKADLESQRQ--------VPRSEASA------FGASHHVAYFEASAKLRLNVDEAFE 164

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQE +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K
Sbjct: 58  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 116
Query: 62  LDLREDK 68
           +D+++ K
Sbjct: 117 VDIKDRK 123

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQE +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K
Sbjct: 65  DTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 123
Query: 62  LDLREDK 68
           +D+++ K
Sbjct: 124 VDIKDRK 130

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQE +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K
Sbjct: 65  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 123
Query: 62  LDLREDK 68
           +D+++ K
Sbjct: 124 VDIKDRK 130

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQE +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K
Sbjct: 70  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 128
Query: 62  LDLREDK 68
           +D+++ K
Sbjct: 129 VDIKDRK 135

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQE +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K
Sbjct: 70  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 128
Query: 62  LDLREDK 68
           +D+++ K
Sbjct: 129 VDIKDRK 135

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQE +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K
Sbjct: 65  DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 123
Query: 62  LDLREDK 68
           +D+++ K
Sbjct: 124 VDIKDRK 130

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE +  +    YRG    ++ + + S  S+ NV K+W+ E+      V  +LVG K   
Sbjct: 67  GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNK--- 122
Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
                   D P    V T    +   Q+G   + E S+K   NV+ +F+
Sbjct: 123 -------NDDPERKVVETEDAYKFAGQMGIQLF-ETSAKENVNVEEMFN 163

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
           +  GQE +  +    YRGA   +L + + SR +Y N L  W+ + +   SP + V+L G 
Sbjct: 80  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETY-NSLAAWLTDARTLASPNIVVILCGN 138
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL  ++        L     AQ  EL        ++E S+ T +NV+  F
Sbjct: 139 KKDLDPEREVTF----LEASRFAQENEL-------MFLETSALTGENVEEAF 179

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
           +  GQE +  +    YRGA   +L + + SR +Y N L  W+ + +   S  + ++L G 
Sbjct: 65  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGN 123
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL  D+        L     AQ  EL        ++E S+ T +NV+  F
Sbjct: 124 KKDLDADREV----TFLEASRFAQENEL-------MFLETSALTGENVEEAF 164

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  G EDY  +R   +R  + F+  FS+    S+      ++ I  ++     VP +LV
Sbjct: 59  LDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLV 117
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           G K DL EDK         V V  A+    R +     Y+E S+KT+ NV  VF
Sbjct: 118 GNKSDL-EDKRQ-------VSVEEAKN---RAEQWNVNYVETSAKTRANVDKVF 160

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+++ +R    R  D F++ +S+  +AS+E+V    + I  ++      P++LV
Sbjct: 71  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILV 129
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 103
             K+DL            L  VT  QG+E+  +     YIE S+K
Sbjct: 130 ANKVDLMH----------LRKVTRDQGKEMATKYNIP-YIETSAK 163

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  G E +  +R L  +    F+L +SLV++ S++++  ++  I  ++ Y   VPV+LV
Sbjct: 56  LDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK-VPVILV 114
Query: 59  GTKLDL 64
           G K+DL
Sbjct: 115 GNKVDL 120

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+++ +R    R  D F++ +S+  +AS+E+V    + I  ++      P++LV
Sbjct: 66  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILV 124
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 103
             K+DL            L  VT  QG+E+  +     YIE S+K
Sbjct: 125 ANKVDLMH----------LRKVTRDQGKEMATKYNIP-YIETSAK 158

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+++ +R    R  D F++ +S+  +AS+E+V    + I  ++      P++LV
Sbjct: 71  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILV 129
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 103
             K+DL            L  VT  QG+E+  +     YIE S+K
Sbjct: 130 ANKVDLMH----------LRKVTRDQGKEMATKYNIP-YIETSAK 163

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           G E +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K+D+
Sbjct: 63  GLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDV 121
Query: 65  REDK 68
           +E K
Sbjct: 122 KERK 125

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH--YSPGVPVVLVG 59
           +  G E +  L    +R A  F+L F L +  S+ NV + WI +LQ   YS    +VL G
Sbjct: 76  DTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCG 134
Query: 60  TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV 108
            K DL + +           V   +  EL ++ G  Y+ E S+    N+
Sbjct: 135 NKSDLEDQR----------AVKEEEARELAEKYGIPYF-ETSAANGTNI 172

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 14/105 (13%)
Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
           ++  GQE+++ +R    R  D F++ +S+  +AS+E+V    + I  ++      P++LV
Sbjct: 71  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRE-SFPMILV 129
Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 103
             K+DL            L  VT  QG+E+  +     YIE S+K
Sbjct: 130 ANKVDLMH----------LRKVTRDQGKEMATKYNIP-YIETSAK 163

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  +LVG K D
Sbjct: 56  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCD 114
Query: 64  L 64
           L
Sbjct: 115 L 115

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           G E +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K+D+
Sbjct: 62  GLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDV 120
Query: 65  REDK 68
           +E K
Sbjct: 121 KERK 124

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGT 60
           +  GQE +  +    +R AD  +L + +    S+ N+ ++W+  ++  +   VP++LVG 
Sbjct: 83  DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGN 141
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV 108
           K D+R+     A   G   V    GE+L    GA  + E S+K   N+
Sbjct: 142 KADIRD----TAATEGQKCVPGHFGEKLAMTYGA-LFCETSAKDGSNI 184

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV--LVG 59
           +  GQE +  L P  YRGA   +L + +  R ++   L  W+ EL+ Y     +V  LVG
Sbjct: 70  DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVK-LDNWLNELETYCTRNDIVNXLVG 128
Query: 60  TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
            K+D +E++           V   +G +  ++  +  +IE S+KT   V+  F+
Sbjct: 129 NKID-KENRE----------VDRNEGLKFARK-HSXLFIEASAKTCDGVQCAFE 170

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 28/115 (24%)
Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL-- 62
           GQE Y  + PL YRGA   ++ F  +S ++  +  K W+ +L+  S    ++LV  K+  
Sbjct: 102 GQERYASIVPLYYRGATCAIVVFD-ISNSNTLDRAKTWVNQLK-ISSNYIIILVANKIDK 159
Query: 63  -----DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
                D+ E + Y  D+  L                   +I+ S+KT  N+K +F
Sbjct: 160 NKFQVDILEVQKYAQDNNLL-------------------FIQTSAKTGTNIKNIF 195

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  G E +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K
Sbjct: 67  DTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNK 125
Query: 62  LDLREDK 68
           +D++E K
Sbjct: 126 VDVKERK 132

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  GQE +  L    Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K
Sbjct: 65  DTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 123
Query: 62  LDLREDK 68
           +D+++ K
Sbjct: 124 VDIKDRK 130

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 16/115 (13%)
Query: 1   MNVIGQEDYNRLRPLSYR-GADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVPVVL 57
           ++  GQ++Y+ L P S+  G   +VL +S+ S  S++ V++    +L   H    VPVVL
Sbjct: 77  VDTAGQDEYSIL-PYSFIIGVHGYVLVYSVTSLHSFQ-VIESLYQKLHEGHGKTRVPVVL 134
Query: 58  VGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           VG K DL  ++           V   +G++L +  GA+ ++E S++  Q  + +F
Sbjct: 135 VGNKADLSPER----------EVQAVEGKKLAESWGAT-FMESSARENQLTQGIF 178

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  G E +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K
Sbjct: 67  DTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 125
Query: 62  LDLREDK 68
           +D+++ K
Sbjct: 126 VDIKDRK 132

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 13/113 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGT 60
           +  GQE Y  +    YRGA   ++ + +   +SYEN    W+ EL ++    V V L+G 
Sbjct: 68  DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGN 126
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
           K DL         H   VP   ++      Q+    + E S+   +NV   F+
Sbjct: 127 KSDLA--------HLRAVPTEESKTFAQENQL---LFTETSALNSENVDKAFE 168

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 13/112 (11%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGT 60
           +  GQE +  +    YRGA   +L + + SR +Y N L  W+ + +   S  + ++L G 
Sbjct: 66  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGN 124
Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           K DL  D+        L     AQ  EL        ++E S+ T ++V+  F
Sbjct: 125 KKDLDADREV----TFLEASRFAQENEL-------MFLETSALTGEDVEEAF 165

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           G E +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K+D+
Sbjct: 64  GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 122
Query: 65  REDK 68
           ++ K
Sbjct: 123 KDRK 126

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 2   NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 61
           +  G E +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K
Sbjct: 65  DTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNK 123
Query: 62  LDLREDK 68
           +D+++ K
Sbjct: 124 VDIKDRK 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-69
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-66
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-64
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	2e-64
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	6e-64
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	9e-64
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-63
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-62
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	3e-62
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	7e-62
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	7e-60
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	1e-59
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	1e-58
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	1e-58
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-26
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	3e-26
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	9e-26
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-25
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	9e-25
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	3e-24
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	1e-23
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	3e-23
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	3e-23
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-23
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	5e-23
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	5e-23
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	8e-23
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	9e-23
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	1e-22
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	2e-22
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	8e-22
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-21
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-21
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	4e-21
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	4e-21
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	4e-21
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	5e-21
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	5e-21
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	5e-21
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-20
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-20
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-20
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-20
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	3e-20
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	4e-20
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-19
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-19
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	1e-19
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	1e-19
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	2e-19
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	2e-19
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	3e-19
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	4e-19
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	4e-19
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	5e-19
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	5e-19
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	6e-19
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	6e-19
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	6e-19
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	7e-19
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	7e-19
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	7e-19
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	7e-19
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	7e-19
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	8e-19
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	1e-18
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-18
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-18
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	2e-18
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	3e-18
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	5e-18
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	6e-18
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	7e-18
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	7e-18
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	8e-18
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-17
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-17
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-17
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	2e-17
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	2e-17
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	3e-17
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	3e-17
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	5e-14
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	1e-13
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	4e-11
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	3e-04
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	6e-04

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  208 bits (531), Expect = 1e-69
 Identities = 98/144 (68%), Positives = 122/144 (84%), Gaps = 7/144 (4%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQEDY+RLRPLSYRGAD+FVLAFSL+S+ASYENVLKKW+PEL+ ++P VP+VLVGTKLDL
Sbjct: 66  GQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 125

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124
           R+DK YLADH     +T+ QGEELRKQIGA+ YIECSSKTQQNVKAVFD AIKVV++PP+
Sbjct: 126 RDDKGYLADHTN--VITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPR 183

Query: 125 KQ----KEKKKKQRGCLL-NVFCG 143
           ++    + K  ++ GC + ++ CG
Sbjct: 184 RKEVPRRRKNHRRSGCSIASIVCG 207

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  199 bits (508), Expect = 1e-66
 Identities = 93/118 (78%), Positives = 108/118 (91%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQEDYNRLRPLSYRGADVF+LAFSL+S+ASYENV KKWIPEL+HY+PGVP+VLVGTKLDL
Sbjct: 65  GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDL 124

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122
           R+DK +  DHPG VP+TT QGEEL+K IGA  YIECSSK+Q+NVK VFDAAI+VV++P
Sbjct: 125 RDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 182

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  194 bits (496), Expect = 1e-64
 Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 8/123 (6%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE+Y+RLRPLSY  +DV +L F++ +R S++N+  KW PE++HY      VLVG K+DL
Sbjct: 80  GQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDL 139

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124
           R+D            VT  +G++L +++G   YIE SS  +  +  VF+ ++  +     
Sbjct: 140 RKDGS--------DDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKP 191

Query: 125 KQK 127
             K
Sbjct: 192 VPK 194

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  194 bits (496), Expect = 2e-64
 Identities = 51/123 (41%), Positives = 77/123 (62%), Gaps = 2/123 (1%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQ+DY+RLRPL Y  A V +L F + S  S++N+  +W PE+ H+   VP+++VG K DL
Sbjct: 91  GQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDL 150

Query: 65  REDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122
           R+DK  +      GL PVT  +G+E+ + +GA  Y+ECS++   NV AVF  A +V +  
Sbjct: 151 RKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS 210

Query: 123 PQK 125
             +
Sbjct: 211 RGR 213

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  197 bits (503), Expect = 6e-64
 Identities = 64/121 (52%), Positives = 85/121 (70%), Gaps = 2/121 (1%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           G EDY+RLRPLSY   DVF++ FSLVS AS+ +V  KW PE++H+ P  P++LVGTKLDL
Sbjct: 212 GLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDL 271

Query: 65  REDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122
           R+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ V+ P
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331

Query: 123 P 123
           P
Sbjct: 332 P 332

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  193 bits (491), Expect = 9e-64
 Identities = 52/125 (41%), Positives = 78/125 (62%), Gaps = 2/125 (1%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW+PE++H+ P VP++LV  K DL
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDL 141

Query: 65  REDKHYLADHP--GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122
           R D+H   +       PV T  G  +  +I A  Y+ECS+KT++ V+ VF+ A +  ++ 
Sbjct: 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201

Query: 123 PQKQK 127
               +
Sbjct: 202 RYGSQ 206

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  192 bits (490), Expect = 1e-63
 Identities = 56/125 (44%), Positives = 84/125 (67%), Gaps = 2/125 (1%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQ+++++LRPL Y   D+F+L FS+VS +S++NV +KW+PE++ + P  P++LVGT+ DL
Sbjct: 77  GQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDL 136

Query: 65  REDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122
           RED   L   D     PV     + L ++I A+ YIECS+ TQ+N+K VFDAAI   I+ 
Sbjct: 137 REDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQY 196

Query: 123 PQKQK 127
              Q+
Sbjct: 197 SDTQQ 201

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  189 bits (483), Expect = 1e-62
 Identities = 65/118 (55%), Positives = 85/118 (72%), Gaps = 2/118 (1%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQEDY+RLRPLSY   DVF++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDL
Sbjct: 87  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 146

Query: 65  REDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120
           R+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ V+
Sbjct: 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  188 bits (480), Expect = 3e-62
 Identities = 52/119 (43%), Positives = 80/119 (67%), Gaps = 2/119 (1%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DL
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 141

Query: 65  REDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           R+D+H   +       PV + +G ++  +I A  Y+ECS+KT++ V+ VF+ A +  ++
Sbjct: 142 RQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  187 bits (477), Expect = 7e-62
 Identities = 67/125 (53%), Positives = 88/125 (70%), Gaps = 2/125 (1%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQEDY+RLRPLSY   DV ++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDL
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121

Query: 65  REDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122
           R+DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ V+ P
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181

Query: 123 PQKQK 127
           P  +K
Sbjct: 182 PPVKK 186

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  183 bits (465), Expect = 7e-60
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           G   Y+ +RPLSY  +D  ++ F +    + ++VLKKW  E+Q + P   ++LVG K DL
Sbjct: 85  GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 144

Query: 65  REDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN-VKAVFDAAIKVVIK 121
           R D   L +  +    PV+  QG  + KQIGA+ YIECS+   +N V+ +F  A    + 
Sbjct: 145 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  182 bits (463), Expect = 1e-59
 Identities = 60/120 (50%), Positives = 88/120 (73%), Gaps = 2/120 (1%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQEDY+RLRPLSY   DVF++ FS+V+ AS++NV ++W+PEL+ Y+P VP +L+GT++DL
Sbjct: 75  GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 134

Query: 65  REDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122
           R+D   LA  +     P+   QG++L K+IGA  Y+ECS+ TQ+ +K VFD AI  ++ P
Sbjct: 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 194

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  180 bits (457), Expect = 1e-58
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 3/129 (2%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           G   Y+ +RPL Y  +D  +L F +    + ++ LKKW  E+  Y P   V+L+G K DL
Sbjct: 84  GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDL 143

Query: 65  REDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ-NVKAVFDAAIKVVIK 121
           R D   L +  H    P++  QG  + KQ+GA  Y+E S+ T + ++ ++F  A  + + 
Sbjct: 144 RTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203

Query: 122 PPQKQKEKK 130
            P    +K 
Sbjct: 204 KPSPLPQKS 212

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  179 bits (455), Expect = 1e-58
 Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           G   Y+ +RPLSY  +D  ++ F +    + ++VLKKW  E+Q + P   ++LVG K DL
Sbjct: 64  GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 123

Query: 65  REDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN-VKAVFDAAIKVVIK 121
           R D   L +  +    PV+  QG  + KQIGA+ YIECS+   +N V+ +F  A    + 
Sbjct: 124 RTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 97.7 bits (244), Expect = 2e-26
 Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 18/136 (13%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL--QHYSPGVPVVLVGTKL 62
           GQ++Y+ L      G   +VL +S+ S  S++ + +    +L   H    VPVVLVG K 
Sbjct: 81  GQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKA 139

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122
           DL  ++           V   +G++L +  GA+ ++E S++  Q  + +F   I+ +   
Sbjct: 140 DLSPERE----------VQAVEGKKLAESWGAT-FMESSARENQLTQGIFTKVIQEI--- 185

Query: 123 PQKQKEKKKKQRGCLL 138
             + +    ++R C L
Sbjct: 186 -ARVENSYGQERRCHL 200

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 96.9 bits (242), Expect = 3e-26
 Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 28/148 (18%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKL 62
           G   +  ++ LS      F+L FS+ S+ S E +  + K I +++     +PV+LVG K 
Sbjct: 65  GSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKC 124

Query: 63  DL--REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120
           D   RE             V T + + + ++   + ++E S+K   NVK +F   + +  
Sbjct: 125 DETQRE-------------VDTREAQAVAQEWKCA-FMETSAKMNYNVKELFQELLTLET 170

Query: 121 ----------KPPQKQKEKKKKQRGCLL 138
                     K   KQK   + +  C L
Sbjct: 171 RRNMSLNIDGKRSGKQKRTDRVKGKCTL 198

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 95.4 bits (238), Expect = 9e-26
 Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 20/141 (14%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKL 62
           GQE+Y+ +R    R  + F+  F++ +  S+E++   +  +++    S  VP+VLVG K 
Sbjct: 61  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKC 119

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK- 121
           DL               V T Q ++L +  G   +IE S+KT+Q V   F   ++ + K 
Sbjct: 120 DLPSRT-----------VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAFYTLVREIRKH 167

Query: 122 ----PPQKQKEKKKKQRGCLL 138
                   +K+KKK +  C++
Sbjct: 168 KEKMSKDGKKKKKKSKTKCVI 188

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 94.5 bits (236), Expect = 2e-25
 Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 14/129 (10%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL--QHYSPGVPVVLVGTKL 62
           GQ++Y+          + ++L +S+ S  S+E + K    +L        +P++LVG K 
Sbjct: 63  GQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKK 121

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122
           DL  ++           ++  +G+ L +   A+ ++E S+K  Q    VF   I    K 
Sbjct: 122 DLHMERV----------ISYEEGKALAESWNAA-FLESSAKENQTAVDVFRRIILEAEKM 170

Query: 123 PQKQKEKKK 131
                + K 
Sbjct: 171 DGACSQGKS 179

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 93.5 bits (233), Expect = 9e-25
 Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 26/148 (17%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKL 62
           GQEDY  +R   +R  + F+  FS+    S+      +  ++        VP +LVG K 
Sbjct: 71  GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKS 129

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK- 121
           DL + +           V+  + +   +Q   + Y+E S+KT+ NV  VF   ++ +   
Sbjct: 130 DLEDKRQ----------VSVEEAKNRAEQWNVN-YVETSAKTRANVDKVFFDLMREIRAR 178

Query: 122 -----------PPQKQKEKKKKQRGCLL 138
                        +K   K+ ++R C+L
Sbjct: 179 KMEDSKEKNGKKKRKSLAKRIRERCCIL 206

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 91.0 bits (227), Expect = 3e-24
 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 15/120 (12%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY---SPGVPVVLVGTK 61
           G   +  ++ LS      F+L +S+ SR S E + K    ++         +P++LVG K
Sbjct: 60  GSHQFPAMQRLSISKGHAFILVYSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNK 118

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
            D    +           V +++ E L +    + ++E S+K   NVK +F   + +  +
Sbjct: 119 CDESPSRE----------VQSSEAEALARTWKCA-FMETSAKLNHNVKELFQELLNLEKR 167

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 89.5 bits (223), Expect = 1e-23
 Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 14/119 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKL 62
           G E +  +R L  +    F+L +SLV++ S++++ K    ++        VPV+LVG K+
Sbjct: 60  GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKV 118

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           DL  ++           V++++G  L ++ G   ++E S+K++  V  +F   ++ +  
Sbjct: 119 DLESERE----------VSSSEGRALAEEWGCP-FMETSAKSKTMVDELFAEIVRQMNY 166

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 88.7 bits (221), Expect = 3e-23
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 14/125 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKL 62
           GQE++  +R    R    F+L F++  R S+  V  K   ++         PVVLVG K 
Sbjct: 66  GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKA 124

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122
           DL   +           V  ++          + Y E S+K + NV   F+  ++ V K 
Sbjct: 125 DLESQRQ----------VPRSEASAFGASHHVA-YFEASAKLRLNVDEAFEQLVRAVRKY 173

Query: 123 PQKQK 127
            +++ 
Sbjct: 174 QEQEL 178

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 88.3 bits (220), Expect = 3e-23
 Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 15/119 (12%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKL 62
           GQE+Y+ +R    R  + F+  F++ +  S+E++  ++  +++    S  VP+VLVG K 
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKS 118

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           DL               V + Q ++L +  G   YIE S+KT+Q V+  F   ++ + +
Sbjct: 119 DLAART-----------VESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 88.8 bits (221), Expect = 3e-23
 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 14/119 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKL 62
           GQEDY  +R   +R  + F+  FS+    S+      +  ++        VP +LVG K 
Sbjct: 75  GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKS 133

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           DL + +           V+  + +   +Q   + Y+E S+KT+ NV  VF   ++ +  
Sbjct: 134 DLEDKRQ----------VSVEEAKNRAEQWNVN-YVETSAKTRANVDKVFFDLMREIRA 181

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 87.9 bits (219), Expect = 5e-23
 Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 14/119 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKL 62
           GQEDY  +R   +R  + F+  FS+    S+      +  ++        VP +LVG K 
Sbjct: 61  GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKS 119

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           DL + +           V+  + +    Q   + Y+E S+KT+ NV  VF   ++ +  
Sbjct: 120 DLEDKRQ----------VSVEEAKNRADQWNVN-YVETSAKTRANVDKVFFDLMREIRA 167

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 88.5 bits (220), Expect = 5e-23
 Identities = 27/133 (20%), Positives = 60/133 (45%), Gaps = 16/133 (12%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVPVVLVGTKL 62
           G+ ++  L     +  D +++ +S+  RAS+E    +   +L+    +  +P++LVG K 
Sbjct: 68  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKS 124

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122
           DL   +           V+ ++G           +IE S+  Q NVK +F+  ++ V   
Sbjct: 125 DLVRXRE----------VSVSEGRAXAVVFDXK-FIETSAAVQHNVKELFEGIVRQVRLR 173

Query: 123 PQKQKEKKKKQRG 135
              +++ +++   
Sbjct: 174 RDSKEKNERRLAY 186

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 88.0 bits (219), Expect = 8e-23
 Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 15/124 (12%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKL 62
           GQE+Y+ +R    R  + F+  F++ +  S+ ++   +  +++    S  VP+VLVG K 
Sbjct: 78  GQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKC 136

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122
           DL               V T Q  EL K  G   +IE S+KT+Q V+  F   ++ + + 
Sbjct: 137 DLPTRT-----------VDTKQAHELAKSYGIP-FIETSAKTRQGVEDAFYTLVREIRQY 184

Query: 123 PQKQ 126
             K+
Sbjct: 185 RMKK 188

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 87.2 bits (217), Expect = 9e-23
 Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 14/119 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKL 62
            Q+    L        D +V+ +S+  + S+E    +   +L+    +  VP++LVG K 
Sbjct: 58  EQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKS 116

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           DL   +           V+  +G           +IE S+    NV+A+F+  ++ +  
Sbjct: 117 DLVRSRE----------VSVDEGRACAVVFDCK-FIETSAALHHNVQALFEGVVRQIRL 164

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 88.2 bits (219), Expect = 1e-22
 Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 17/127 (13%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVPVVLVGTKL 62
           G+ ++  L     +  D +++ +S+  RAS+E    +   +L+    +  +P++LVG K 
Sbjct: 99  GENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKS 155

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122
           DL   +           V+ ++G           +IE S+  Q NVK +F+  ++  ++ 
Sbjct: 156 DLVRCRE----------VSVSEGRACAVVFDCK-FIETSAAVQHNVKELFEGIVR-QVRL 203

Query: 123 PQKQKEK 129
            +  KEK
Sbjct: 204 RRDSKEK 210

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 86.4 bits (215), Expect = 2e-22
 Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 13/119 (10%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKL 62
           G E +  +R L  +    F L +S+ +++++ ++ +    ++     +  VP++LVG K 
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKC 118

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           DL +++           V   QG+ L +Q     ++E S+K++ NV  +F   ++ + +
Sbjct: 119 DLEDERV----------VGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 84.9 bits (211), Expect = 8e-22
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 12/117 (10%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE+++ +    YRGA   VL FS   R S+E +   W  ++      +P  LV  K+DL
Sbjct: 63  GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDL 121

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
            +D            +   + E L K++    +   S K   NV  VF    +  ++
Sbjct: 122 LDDSC----------IKNEEAEGLAKRLKLR-FYRTSVKEDLNVSEVFKYLAEKHLQ 167

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 84.5 bits (210), Expect = 2e-21
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 12/127 (9%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE +  +    YRG    ++ + + S  S+ NV K+W+ E+      V  +LVG K D 
Sbjct: 67  GQERFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDD 125

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124
            E K           V T    +   Q+G     E S+K   NV+ +F+   ++V++  +
Sbjct: 126 PERKV----------VETEDAYKFAGQMGIQ-LFETSAKENVNVEEMFNCITELVLRAKK 174

Query: 125 KQKEKKK 131
               K++
Sbjct: 175 DNLAKQQ 181

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 84.1 bits (209), Expect = 2e-21
 Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 15/120 (12%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKL 62
           GQE+++ +R    R  D F++ +S+  +AS+E+V  ++   +         P++LV  K+
Sbjct: 75  GQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKV 133

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT-QQNVKAVFDAAIKVVIK 121
           DL   +           VT  QG+E+  +     YIE S+K    NV   F   ++V+ +
Sbjct: 134 DLMHLRK----------VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVIRQ 182

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 83.8 bits (208), Expect = 4e-21
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 15/111 (13%)

Query: 5   GQEDY-NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVPVVLVGTK 61
            Q D    LR    +  D F++ FS+  R S+  V  + +  L+       +PV+LVG K
Sbjct: 81  EQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNK 139

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
            DL   +           V+  +G  L   +    +IE S+    N + +F
Sbjct: 140 SDLARSRE----------VSLEEGRHLAGTLSCK-HIETSAALHHNTRELF 179

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 83.6 bits (207), Expect = 4e-21
 Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 11/121 (9%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           G+E++    P       +++  + L    +  + +K W+  ++  +   PV+LVGT LD+
Sbjct: 65  GREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDV 124

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIG----ASYYIECSSKTQQNVKAVFDAAIKVVI 120
            ++K             +   +EL  + G      Y+   +++    +  +    I   +
Sbjct: 125 SDEKQ-------RKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESL 177

Query: 121 K 121
            
Sbjct: 178 N 178

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 82.9 bits (206), Expect = 4e-21
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 15/111 (13%)

Query: 5   GQEDYN-RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGVPVVLVGTK 61
            Q D    L+    +  D F++ FS+  R S+  V  + +  L+       +PV+LVG K
Sbjct: 60  EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNK 118

Query: 62  LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
            DL   +           V+  +G  L   +    +IE S+    N + +F
Sbjct: 119 SDLARSRE----------VSLEEGRHLAGTLSCK-HIETSAALHHNTRELF 158

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 83.0 bits (206), Expect = 5e-21
 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 15/122 (12%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVG 59
           GQE +  L    YRGAD  VL + + + +S+EN+ K W  E   ++        P V++G
Sbjct: 67  GQERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILG 125

Query: 60  TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119
            K+D  E K           V+    +EL K +G       S+K   NV   F+   +  
Sbjct: 126 NKIDAEESKK---------IVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176

Query: 120 IK 121
           ++
Sbjct: 177 LQ 178

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 83.4 bits (207), Expect = 5e-21
 Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 16/125 (12%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKL 62
           GQED    R    R  + FVL + +  R S+E V       L        V ++LVG K 
Sbjct: 85  GQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKA 142

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ-NVKAVFDAAIKVVIK 121
           DL   +           V+T +GE+L  ++  + + ECS+ T + N+  +F    + V +
Sbjct: 143 DLDHSRQ----------VSTEEGEKLATELACA-FYECSACTGEGNITEIFYELCREVRR 191

Query: 122 PPQKQ 126
               Q
Sbjct: 192 RRMVQ 196

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 83.0 bits (206), Expect = 5e-21
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 16/119 (13%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKL 62
           G  +            D  V  FSL    S++ V   +   L  +  +  VP+VLVGT+ 
Sbjct: 76  GPPELQ-----FAAWVDAVVFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQD 129

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
            +               +  ++  +L   +    Y E  +    NV+ VF    + V+ 
Sbjct: 130 AISAANP--------RVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVA 180

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 83.1 bits (206), Expect = 1e-20
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 14/122 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G K+D+
Sbjct: 73  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 131

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124
           ++ K              A+     ++    YY + S+K+  N +  F    + +I  P 
Sbjct: 132 KDRK------------VKAKSIVFHRKKNLQYY-DISAKSNYNFEKPFLWLARKLIGDPN 178

Query: 125 KQ 126
            +
Sbjct: 179 LE 180

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 82.7 bits (205), Expect = 1e-20
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 12/118 (10%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +  +    YR A+  +LA+ +  R+S+ +V   WI +++ Y    +  +L+G K D
Sbjct: 87  GQERFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSD 145

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           L E +           V+ A+ + L +       IE S+K   NV+  F      +I 
Sbjct: 146 LSELRE----------VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 82.8 bits (205), Expect = 1e-20
 Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 34/153 (22%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           G E +  L P   R + V V+ + + +  S++    KWI +++      V ++LVG K D
Sbjct: 74  GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTD 132

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF----------- 112
           L + +           V+  +GE   K++    +IE S+K   NVK +F           
Sbjct: 133 LADKRQ----------VSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGME 181

Query: 113 -------DAAIKVVIKPPQKQKEKKKKQRGCLL 138
                  +  I + ++ PQ+Q   +    GCLL
Sbjct: 182 STQDRSREDMIDIKLEKPQEQPVSEG---GCLL 211

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 82.7 bits (205), Expect = 1e-20
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 13/131 (9%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLD 63
           GQE    L+ + Y GA   +L F + SR + +N+  +W+ E Q       P+V+   K+D
Sbjct: 70  GQEKKAVLKDVYYIGASGAILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKID 128

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123
           ++  +           ++     E+ K     Y+ E S+KT  N    F    ++    P
Sbjct: 129 IKNRQK----------ISKKLVMEVLKGKNYEYF-EISAKTAHNFGLPFLHLARIFTGRP 177

Query: 124 QKQKEKKKKQR 134
                      
Sbjct: 178 DLIFVSNVNLE 188

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 81.1 bits (201), Expect = 3e-20
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 16/121 (13%)

Query: 5   GQE--DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL--QHYSPGVPVVLVGT 60
             E  D +  +    +G   +V+ +S+  R S+E+   +   +L   H +  VP++LVG 
Sbjct: 61  EAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGN 119

Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120
           K DL   +           V+  +G           +IE S+  Q NV  +F+  ++ + 
Sbjct: 120 KADLARCRE----------VSVEEGRACAVVFDCK-FIETSATLQHNVAELFEGVVRQLR 168

Query: 121 K 121
            
Sbjct: 169 L 169

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 80.6 bits (200), Expect = 4e-20
 Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 13/118 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE ++ L P+ YR ++  +L + +    S++ V K W+ EL+      + + +VG K+D
Sbjct: 64  GQERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKID 122

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           L +++H          V+  + E   + +GA  +   S+K  + ++ +F    K +I+
Sbjct: 123 LEKERH----------VSIQEAESYAESVGA-KHYHTSAKQNKGIEELFLDLCKRMIE 169

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 79.5 bits (197), Expect = 1e-19
 Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 13/123 (10%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE Y+ L P+ YRGA   ++ F + ++AS+E   KKW+ ELQ   +P + + L G K D
Sbjct: 70  GQERYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSD 128

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123
           L + +           VT    +   ++ G  +++E S+KT  NVK +F    + + +  
Sbjct: 129 LLDARK----------VTAEDAQTYAQENGL-FFMETSAKTATNVKEIFYEIARRLPRVQ 177

Query: 124 QKQ 126
             +
Sbjct: 178 PTE 180

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 79.5 bits (197), Expect = 1e-19
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 13/109 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +  L P   R + V V+ + + +  S+     KWI +++      V ++LVG K D
Sbjct: 72  GQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTD 130

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
           L + +           V+T +GE   K++    +IE S+K   NVK +F
Sbjct: 131 LSDKRQ----------VSTEEGERKAKELNV-MFIETSAKAGYNVKQLF 168

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 79.5 bits (197), Expect = 1e-19
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 18/122 (14%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY----SPGVPVVLVGT 60
             +   R        A  F++ +S+ SR S+++    ++  L  +       +P +L+G 
Sbjct: 78  DLDTP-RNCERYLNWAHAFLVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGN 135

Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ-QNVKAVFDAAIKVV 119
           KLD+ + +           VT A+G  L  + G  ++ E S+    ++V+ VF  A++  
Sbjct: 136 KLDMAQYRQ----------VTKAEGVALAGRFGCLFF-EVSACLDFEHVQHVFHEAVREA 184

Query: 120 IK 121
            +
Sbjct: 185 RR 186

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 80.0 bits (198), Expect = 1e-19
 Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 7/118 (5%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +  +    +R AD  +L + +    S+ N+ ++W+  ++      VP++LVG K D
Sbjct: 86  GQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKAD 144

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           +R+             V    GE+L    GA  + E S+K   N+        + V K
Sbjct: 145 IRDTAATEGQK----CVPGHFGEKLAMTYGAL-FCETSAKDGSNIVEAVLHLAREVKK 197

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 79.2 bits (196), Expect = 2e-19
 Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 14/124 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE ++ L P+ YRG+   V+ + +  + S+  + KKW+ EL+ +    + + + G K D
Sbjct: 81  GQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCD 139

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123
           L + +           V     +E  + IGA   +E S+K   N++ +F    +  I P 
Sbjct: 140 LSDIRE----------VPLKDAKEYAESIGA-IVVETSAKNAINIEELFQGISR-QIPPL 187

Query: 124 QKQK 127
              +
Sbjct: 188 DPHE 191

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 78.3 bits (194), Expect = 2e-19
 Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 13/118 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           G E +  L P+ YRG+   ++ + +    ++  + K W+ EL+ +  P + V + G K D
Sbjct: 64  GLERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCD 122

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           L + +           V     ++    I A  ++E S+K   N+  +F    + +  
Sbjct: 123 LTDVRE----------VMERDAKDYADSIHA-IFVETSAKNAININELFIEISRRIPS 169

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 78.3 bits (194), Expect = 3e-19
 Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 17/122 (13%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVG 59
           GQE +  LR   YRG+D  +L FS+    S++N+   W  E  +Y+        P V++G
Sbjct: 65  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILG 123

Query: 60  TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119
            K+D+ E +           V+T + +   +  G   Y E S+K   NV A F+ A++ V
Sbjct: 124 NKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

Query: 120 IK 121
           + 
Sbjct: 173 LA 174

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 78.5 bits (194), Expect = 4e-19
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 13/124 (10%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +  +    YR A+  +L + +    S+  +  +W+ E++ Y S  V  VLVG K+D
Sbjct: 84  GQERFRSITQSYYRSANALILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKID 142

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123
           L E +           V+  + EE  +     YY+E S+K   NV+ +F      +I   
Sbjct: 143 LAERRE----------VSQQRAEEFSEAQDM-YYLETSAKESDNVEKLFLDLACRLISEA 191

Query: 124 QKQK 127
           ++  
Sbjct: 192 RQNT 195

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 78.4 bits (194), Expect = 4e-19
 Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 20/130 (15%)

Query: 5   GQEDYNRLRPLS---YRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVG 59
           G E   R R L+   +R A  F+L F L +  S+ NV + WI +LQ +  S    +VL G
Sbjct: 79  GLE---RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCG 134

Query: 60  TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119
            K DL + +           V   +  EL ++ G  Y  E S+    N+    +  + ++
Sbjct: 135 NKSDLEDQRA----------VKEEEARELAEKYGIPY-FETSAANGTNISHAIEMLLDLI 183

Query: 120 IKPPQKQKEK 129
           +K  ++  +K
Sbjct: 184 MKRMERSVDK 193

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 78.0 bits (193), Expect = 5e-19
 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 12/118 (10%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +N +    YR A   +L + +  + +++++  KW+  +  Y S    ++LVG KLD
Sbjct: 84  GQERFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLD 142

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
              D+           +T  QGE+  +QI    + E S+K   NV  +F   +  ++K
Sbjct: 143 CETDRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 77.6 bits (192), Expect = 5e-19
 Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 13/118 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE Y+ L P+ YRGA   ++ + + +  S+    K W+ ELQ   SP + + L G K D
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKAD 122

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           L   +           V   + +          ++E S+KT  NV  +F A  K + K
Sbjct: 123 LANKRA----------VDFQEAQSYADDNSL-LFMETSAKTSMNVNEIFMAIAKKLPK 169

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 78.1 bits (193), Expect = 6e-19
 Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 13/130 (10%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           G E Y  +    YRGA  F+L + + +  S+  V + W  +++ Y      V+LVG K D
Sbjct: 66  GLERYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCD 124

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123
           + +++           V++ +G +L   +G  +  E S+K   NVK  F+  + V+ +  
Sbjct: 125 MEDERV----------VSSERGRQLADHLGFEF-FEASAKDNINVKQTFERLVDVICEKM 173

Query: 124 QKQKEKKKKQ 133
            +  +     
Sbjct: 174 SESLDTADPA 183

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 77.7 bits (192), Expect = 6e-19
 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 13/118 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE Y  +    YRGA  F+L + + +  S+  V + W  +++ Y      V+LVG K D
Sbjct: 81  GQERYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCD 139

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           + E++           V T +G+ L +Q+G   + E S+K   +V+  F+  +  +  
Sbjct: 140 MEEERV----------VPTEKGQLLAEQLGFD-FFEASAKENISVRQAFERLVDAICD 186

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 78.3 bits (193), Expect = 6e-19
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 14/117 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE Y  + PL YRGA   ++ F + +  + +   K W+ +L+       ++LV  K+D 
Sbjct: 102 GQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKIS-SNYIIILVANKIDK 159

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
            + +           V   + ++  +      +I+ S+KT  N+K +F    + + K
Sbjct: 160 NKFQ-----------VDILEVQKYAQDNNLL-FIQTSAKTGTNIKNIFYMLAEEIYK 204

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 78.1 bits (193), Expect = 7e-19
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  +LVG K D
Sbjct: 74  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCD 132

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123
           L   K           V     +E    +G  + +E S+K   NV+  F      + K  
Sbjct: 133 LTTKKV----------VDYTTAKEFADSLGIPF-LETSAKNATNVEQSFMTMAAEIKKRM 181

Query: 124 QKQKEKKKKQRG 135
                    ++ 
Sbjct: 182 GPGATAGGAEKS 193

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 77.6 bits (192), Expect = 7e-19
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 13/118 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE Y  +    YRGA  F+L + + ++ S+  V + W  +++ Y      V+LVG K D
Sbjct: 80  GQERYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCD 138

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           L +++           V    G  L   +G   + E S+K   NVK VF+  + V+ +
Sbjct: 139 LEDERV----------VPAEDGRRLADDLGFE-FFEASAKENINVKQVFERLVDVICE 185

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 77.7 bits (192), Expect = 7e-19
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 13/123 (10%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           G E Y  +    YRGA   +L F L    +Y  V ++W+ EL  +    + V+LVG K D
Sbjct: 83  GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSD 141

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123
           L + +           V T +     +  G   ++E S+    NV+  F+  +K +    
Sbjct: 142 LSQARE----------VPTEEARMFAENNGL-LFLETSALDSTNVELAFETVLKEIFAKV 190

Query: 124 QKQ 126
            KQ
Sbjct: 191 SKQ 193

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 78.1 bits (193), Expect = 7e-19
 Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 13/132 (9%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +  +    YRG+   ++ + +  + S+  V K W+ E+  Y +  V  +LVG K D
Sbjct: 66  GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCD 124

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123
           L++ +           V     +E        + +E S+    NV+  F    + + +  
Sbjct: 125 LKDKRV----------VEYDVAKEFADANKMPF-LETSALDSTNVEDAFLTMARQIKESM 173

Query: 124 QKQKEKKKKQRG 135
            +Q   +  Q+ 
Sbjct: 174 SQQNLNETTQKK 185

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 78.1 bits (193), Expect = 7e-19
 Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 20/133 (15%)

Query: 5   GQEDYNRLRPLS---YRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVG 59
           GQE   R R L+   +R A  F+L F L S+ S+ NV + W+ +LQ         +VL+G
Sbjct: 93  GQE---RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIG 148

Query: 60  TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119
            K DL + +           V   Q  EL  + G  Y  E S+ T QNV+   +  + ++
Sbjct: 149 NKADLPDQRE----------VNERQARELADKYGIPY-FETSAATGQNVEKAVETLLDLI 197

Query: 120 IKPPQKQKEKKKK 132
           +K  ++  EK + 
Sbjct: 198 MKRMEQCVEKTQI 210

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 77.7 bits (192), Expect = 8e-19
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 13/118 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +  +    YRGA   ++ + +  + S+ NV K+W+ E+  Y S  V  +LVG K D
Sbjct: 91  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCD 149

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           L   K           V     +E    +G   ++E S+K   NV+  F      + K
Sbjct: 150 LTTKKV----------VDYTTAKEFADSLGIP-FLETSAKNATNVEQSFMTMAAEIKK 196

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 76.9 bits (190), Expect = 1e-18
 Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 22/129 (17%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY----SPGVPVVLVGT 60
           G  D           AD  +  FSL    S++  + +   +L         G+ + LVGT
Sbjct: 63  GAPDA-----KFSGWADAVIFVFSLEDENSFQA-VSRLHGQLSSLRGEGRGGLALALVGT 116

Query: 61  --KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118
             ++     +           V  A+   L   +    Y E  +    NV  VF    + 
Sbjct: 117 QDRISASSPR----------VVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQK 166

Query: 119 VIKPPQKQK 127
           V+   ++Q+
Sbjct: 167 VVTLRKQQQ 175

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 76.9 bits (190), Expect = 1e-18
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 13/126 (10%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +  +    YRGA   +L + + +  S++N+ + WI  ++ + S  V  +++G K D
Sbjct: 66  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCD 124

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123
           + + +           V+  +GE+L    G   ++E S+K   NV+  F    + +    
Sbjct: 125 VNDKRQ----------VSKERGEKLALDYGIK-FMETSAKANINVENAFFTLARDIKAKM 173

Query: 124 QKQKEK 129
            K  + 
Sbjct: 174 DKNWKA 179

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 77.3 bits (191), Expect = 1e-18
 Identities = 31/140 (22%), Positives = 53/140 (37%), Gaps = 17/140 (12%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVG 59
           GQE +  L    YRGAD  VL F + +  +++ +   W  E    +        P V++G
Sbjct: 66  GQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLG 124

Query: 60  TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119
            K+DL   +           V T + +          Y E S+K   NV+  F    +  
Sbjct: 125 NKIDLENRQ-----------VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173

Query: 120 IKPPQKQKEKKKKQRGCLLN 139
           +K   + +   +      L+
Sbjct: 174 LKQETEVELYNEFPEPIKLD 193

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 76.9 bits (190), Expect = 2e-18
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 13/118 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLD 63
           GQE +  +    YRGA   +L + +  R ++ ++   W+ +  QH S  + ++L+G K D
Sbjct: 79  GQESFRSITRSYYRGAAGALLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSD 137

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           L   +           V   +GE   ++ G   ++E S+KT  NV+  F    K + +
Sbjct: 138 LESRRD----------VKREEGEAFAREHGL-IFMETSAKTACNVEEAFINTAKEIYR 184

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 76.2 bits (188), Expect = 3e-18
 Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 13/132 (9%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE Y R+    YRGA   +L + +    +YENV ++W+ EL+ +    + ++LVG K D
Sbjct: 63  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSD 121

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123
           LR  +           V T +     ++   S+ IE S+    NV+  F   +  + +  
Sbjct: 122 LRHLRA----------VPTDEARAFAEKNNLSF-IETSALDSTNVEEAFKNILTEIYRIV 170

Query: 124 QKQKEKKKKQRG 135
            +++   +    
Sbjct: 171 SQKQIADRAAHD 182

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 75.3 bits (186), Expect = 5e-18
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 13/124 (10%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +  +    YRGA   +L + + SR +Y  +   W+ + +   S  + ++L G K D
Sbjct: 68  GQERFRSVTRSYYRGAAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKD 126

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123
           L  D+           VT  +     ++     ++E S+ T +NV+  F    + ++   
Sbjct: 127 LDADRE----------VTFLEASRFAQENELM-FLETSALTGENVEEAFVQCARKILNKI 175

Query: 124 QKQK 127
           +  +
Sbjct: 176 ESGE 179

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 75.4 bits (186), Expect = 6e-18
 Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 13/118 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +  +    YRGA   +L + + SR +Y ++   W+ + +   SP + V+L G K D
Sbjct: 83  GQERFRSVTRSYYRGAAGALLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKD 141

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           L  ++           VT  +     ++     ++E S+ T +NV+  F    + ++ 
Sbjct: 142 LDPERE----------VTFLEASRFAQENELM-FLETSALTGENVEEAFLKCARTILN 188

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 74.9 bits (185), Expect = 7e-18
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 13/123 (10%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +  +    YR A   +L + + ++AS++N+ + W+ E+  Y    V ++L+G K+D
Sbjct: 69  GQERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVD 127

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123
              ++           V    GE+L K+ G   ++E S+KT  NV   F A  K + +  
Sbjct: 128 SAHERV----------VKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTAIAKELKRRS 176

Query: 124 QKQ 126
            K 
Sbjct: 177 MKA 179

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 75.9 bits (187), Expect = 7e-18
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 13/132 (9%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE Y  +    YRGA   ++ + +   +SYEN    W+ EL+      V V L+G K D
Sbjct: 71  GQERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSD 129

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123
           L   +           V T + +   ++     + E S+   +NV   F+  I  + +  
Sbjct: 130 LAHLRA----------VPTEESKTFAQENQLL-FTETSALNSENVDKAFEELINTIYQKV 178

Query: 124 QKQKEKKKKQRG 135
            K +        
Sbjct: 179 SKHQMDLGDSSA 190

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 74.5 bits (184), Expect = 8e-18
 Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 13/118 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +  +    YRGA   ++ + +  R++Y ++   W+ + ++  +P   ++L+G K D
Sbjct: 73  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKAD 131

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           L   +           VT  + ++  ++ G   ++E S+KT +NV+  F  A K + +
Sbjct: 132 LEAQRD----------VTYEEAKQFAEENGL-LFLEASAKTGENVEDAFLEAAKKIYQ 178

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 75.0 bits (185), Expect = 1e-17
 Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 16/122 (13%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ----HYSPGVPVVLVGT 60
           G + Y       + G    +L F + S  S+E+  K W   L+         +  VLV  
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVAN 140

Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK-TQQNVKAVFDAAIKVV 119
           K DL   +H          V     ++         + + S+    ++  A F +     
Sbjct: 141 KTDLPPQRH---------QVRLDMAQDWATTNTLD-FFDVSANPPGKDADAPFLSIATTF 190

Query: 120 IK 121
            +
Sbjct: 191 YR 192

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 75.1 bits (185), Expect = 1e-17
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 14/130 (10%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +  +    YRGA   +L + +    ++ N+ K+W   +  + +    ++LVG K D
Sbjct: 78  GQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSD 136

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123
           + E +           VT  QGE L K++G  + IE S+K   NV  +F    K++ +  
Sbjct: 137 M-ETRV----------VTADQGEALAKELGIPF-IESSAKNDDNVNEIFFTLAKLIQEKI 184

Query: 124 QKQKEKKKKQ 133
              K      
Sbjct: 185 DSNKLVGVGN 194

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 77.3 bits (190), Expect = 1e-17
 Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 15/125 (12%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE  +         + V++L        +  N    W+  ++ Y    PV++V  K+D 
Sbjct: 107 GQEIMHASHQFFMTRSSVYMLLLDS---RTDSN-KHYWLRHIEKYGGKSPVIVVMNKIDE 162

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124
               +          +   +  E    I    +   S K    V+++  +    V+ P  
Sbjct: 163 NPSYN----------IEQKKINERFPAIENR-FHRISCKNGDGVESIAKSLKSAVLHPDS 211

Query: 125 KQKEK 129
                
Sbjct: 212 IYGTP 216

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 73.7 bits (182), Expect = 2e-17
 Identities = 23/126 (18%), Positives = 45/126 (35%), Gaps = 16/126 (12%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ----HYSPGVPVVLVGT 60
           GQ    ++      GA   +L + + +  S+EN+ + W   ++           V LVG 
Sbjct: 65  GQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGN 123

Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120
           K+DL   +           +   +     ++ G S     S+KT  +V   F      ++
Sbjct: 124 KIDLEHMRT----------IKPEKHLRFCQENGFS-SHFVSAKTGDSVFLCFQKVAAEIL 172

Query: 121 KPPQKQ 126
                +
Sbjct: 173 GIKLNK 178

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 74.2 bits (183), Expect = 2e-17
 Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 13/114 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           G E Y  +    YRGA   +L + +    +YENV ++W+ EL+ +    + ++LVG K D
Sbjct: 87  GLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSD 145

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 117
           LR  +           V T +     ++ G   +IE S+    NV+A F   + 
Sbjct: 146 LRHLRA----------VPTDEARAFAEKNGL-SFIETSALDSTNVEAAFQTILT 188

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 73.8 bits (182), Expect = 3e-17
 Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 15/131 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKL 62
           GQE +  L P  YRGA   +L + +  R ++  +   W+ EL+ Y     +  +LVG K+
Sbjct: 73  GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKI 131

Query: 63  DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122
           D  E++           V   +G +  ++     +IE S+KT   V+  F+  ++ +I+ 
Sbjct: 132 DK-ENRE----------VDRNEGLKFARKHSM-LFIEASAKTCDGVQCAFEELVEKIIQT 179

Query: 123 PQKQKEKKKKQ 133
           P   + + +  
Sbjct: 180 PGLWESENQNS 190

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 73.0 bits (180), Expect = 3e-17
 Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 14/118 (11%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLD 63
           GQE +  +    YRGA   +L + +    ++ N+ K+W   +  + +    ++LVG K D
Sbjct: 61  GQERFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSD 119

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           + E +           VT  QGE L K++G   +IE S+K   NV  +F    K++ +
Sbjct: 120 M-ETRV----------VTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 165

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 64.9 bits (159), Expect = 5e-14
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 17/106 (16%)

Query: 17  YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADH 74
           YR     V  + + + AS+ ++   WI E + +     +P +LVG K DLR         
Sbjct: 91  YRNVHAVVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----- 144

Query: 75  PGLVPVTTAQGEELRKQIGASYYIECSSKTQ---QNVKAVFDAAIK 117
                V T   ++           E S+K      +V+A+F     
Sbjct: 145 -----VPTDLAQKFADTHSMP-LFETSAKNPNDNDHVEAIFMTLAH 184

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 63.7 bits (155), Expect = 1e-13
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 10/109 (9%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLD 63
           GQE +  L P  YR A   ++ + +    S+    + W+ EL    S  + + LVG K+D
Sbjct: 61  GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKID 119

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 112
             ++            V   +GE+L ++ G   + E S+KT +NV  VF
Sbjct: 120 XLQEGGERK-------VAREEGEKLAEEKGL-LFFETSAKTGENVNDVF 160

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 58.1 bits (140), Expect = 4e-11
 Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 17/116 (14%)

Query: 10  NRLRPLSYRGADVFVLAF--SLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLR 65
            +  P      D F+L    S     ++++   K++  L +       P+V+V TK D  
Sbjct: 153 QKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEG 211

Query: 66  EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
            +++          +  A    L K+      +E S+++  NV   F   ++++ K
Sbjct: 212 VERY----------IRDAHTFALSKK-NLQV-VETSARSNVNVDLAFSTLVQLIDK 255

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 29/126 (23%), Positives = 45/126 (35%), Gaps = 25/126 (19%)

Query: 5   GQEDYNRLRPLSYRGAD--VFVL----AFSLVSRASYENVLKKWIPELQHYSPGVPVVLV 58
           GQ  YN  R L  RG D  VFV          +  S  N +++ + E       VP+V+ 
Sbjct: 83  GQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRN-MRENLAEYGLTLDDVPIVIQ 141

Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS---YYIECSSKTQQNVKAVFDAA 115
             K DL          P  +PV     E +R  +        +E  +   + V       
Sbjct: 142 VNKRDL----------PDALPV-----EMVRAVVDPEGKFPVLEAVATEGKGVFETLKEV 186

Query: 116 IKVVIK 121
            ++V+ 
Sbjct: 187 SRLVLA 192

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 26/135 (19%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP---GVPVVL 57
            N I ++    LR L      +++   S       E  +       +        +P ++
Sbjct: 232 RNEIEKQAILALRYL--GNLIIYIFDPSEHCGFPLEEQIH----LFEEVHGEFKDLPFLV 285

Query: 58  VGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY--IECSSKTQQNVKAVFDAA 115
           V  K+D+ ++++                + L K +       I+ S+     +  V +  
Sbjct: 286 VINKIDVADEENI---------------KRLEKFVKEKGLNPIKISALKGTGIDLVKEEI 330

Query: 116 IKVVIKPPQKQKEKK 130
           IK +    +K   +K
Sbjct: 331 IKTLRPLAEKVAREK 345

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.96
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.93
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.91
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.91
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.91
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.91
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.91
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.91
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.91
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.9
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.9
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.9
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.9
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.9
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.9
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.89
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.89
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.89
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.89
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.89
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.89
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.89
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.89
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.89
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.89
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.89
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.89
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.89
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.89
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.89
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.89
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.89
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.89
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.89
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.89
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.89
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.89
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.89
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.89
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.88
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.88
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.88
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.88
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.88
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.88
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.88
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.88
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.88
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.88
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.88
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.88
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.88
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.88
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.88
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.88
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.88
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.88
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.88
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.87
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.87
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.87
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.87
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.87
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.87
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.87
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.87
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.87
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.87
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.86
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.86
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.86
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.86
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.86
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.86
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.86
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.86
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.86
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.86
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.86
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.86
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.85
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.85
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.85
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.85
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.85
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.85
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.85
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.84
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.84
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.84
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.84
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.83
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.73
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.83
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.83
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.83
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.83
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.82
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.82
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.79
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.79
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.78
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.78
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.78
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.77
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.77
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.77
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.76
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.76
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.76
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.76
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.75
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.75
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.74
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.73
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.72
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.71
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.7
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.69
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.69
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.68
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.68
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.67
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.65
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.63
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.63
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.63
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.62
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.61
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.6
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.6
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.59
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.59
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.59
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.58
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.57
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.57
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.57
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.56
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.55
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.55
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.53
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.53
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.53
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.53
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.53
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.52
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.51
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.49
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.48
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.48
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.47
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.46
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.45
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.44
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.43
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.41
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.41
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.41
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.41
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.4
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.4
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.39
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.38
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.38
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.35
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.35
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.31
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.31
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.31
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.3
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.3
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.28
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.26
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.25
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.25
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.24
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.23
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.22
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.22
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.17
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.16
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.15
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.11
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.1
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.09
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.07
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.03
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.03
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.01
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.0
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.98
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.95
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.94
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.93
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.89
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.78
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.78
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	98.77
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.76
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.73
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.71
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.65
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.62
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.56
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.55
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.53
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.53
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.51
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.47
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.42
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.35
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.24
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.06
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.99
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	96.52
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.07
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	95.44
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	94.64
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	92.3
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	92.17
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	91.94
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	90.86
3cwq_A	209	Para family chromosome partitioning protein; alpha	88.23
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	86.85
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	85.41
3end_A	307	Light-independent protochlorophyllide reductase ir	83.22
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	83.04
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	82.37

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.96  E-value=4.8e-30  Score=183.35  Aligned_cols=109  Identities=27%  Similarity=0.486  Sum_probs=100.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||||+|..+++.|+++++++++|||++++.||+.+ ..|+..+.... +++|++|||||+|+.+.+.          
T Consensus        67 wDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i-~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~----------  135 (216)
T 4dkx_A           67 WDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------  135 (216)
T ss_dssp             ECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----------
T ss_pred             EECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHH-HHHHHHHHHhcCCCCeEEEEeeccchHhcCc----------
Confidence            99999999999999999999999999999999999998 89988887665 6899999999999987654          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      |..+++..+++.+++ +|+++||++|.||+++|+.|++.+..
T Consensus       136 V~~~e~~~~a~~~~~-~~~e~SAktg~nV~e~F~~i~~~i~~  176 (216)
T 4dkx_A          136 VSIEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPG  176 (216)
T ss_dssp             SCHHHHHHHHHHHTC-EEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred             ccHHHHhhHHHHhCC-eeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence            589999999999998 89999999999999999999998854

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.93  E-value=1.4e-25  Score=158.57  Aligned_cols=138  Identities=69%  Similarity=1.134  Sum_probs=101.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|..+++.+++++|++|+|||++++.+++.+...|+..+....++.|+++|+||+|+.........  ....+
T Consensus        62 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~v  139 (212)
T 2j0v_A           62 WDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLAD--HTNVI  139 (212)
T ss_dssp             ECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHT--CSSCC
T ss_pred             EECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccccc--ccCCC
Confidence            8999999999999999999999999999999999999844899999888788999999999999764321000  11134


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcchh----hhhccCCCceeee
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQK----EKKKKQRGCLLNV  140 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~----~~~~~~~~c~~~~  140 (150)
                      ..+++..+++.++..+++++||+++.|++++|+.+++.+......++    +.+++.+.|.++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~~~  203 (212)
T 2j0v_A          140 TSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRSGCSIAS  203 (212)
T ss_dssp             CHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC----------------------
T ss_pred             CHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhhhhcccccccccccCCCcEEeh
Confidence            67888899999986699999999999999999999999987655443    2233445677763

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.91  E-value=1.1e-24  Score=150.76  Aligned_cols=126  Identities=30%  Similarity=0.545  Sum_probs=98.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..+++.+++.+|++++|||++++.+++.+ ..|...+....  .+.|+++|+||+|+....          
T Consensus        57 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~----------  125 (189)
T 4dsu_A           57 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPSRT----------  125 (189)
T ss_dssp             EECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTSSSCS----------
T ss_pred             EECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccCcccc----------
Confidence            89999999999999999999999999999999999998 88988887754  479999999999997533          


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc-----chhhhhccCCCceee
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ-----KQKEKKKKQRGCLLN  139 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~-----~~~~~~~~~~~c~~~  139 (150)
                       +..+.+..+++.+++ +++++||+++.|++++|+.+++.+.....     ..+++++++.+|.||
T Consensus       126 -~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~kk~~~~c~i~  189 (189)
T 4dsu_A          126 -VDTKQAQDLARSYGI-PFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM  189 (189)
T ss_dssp             -SCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHHHHHHHHHCSSTTCCC--------
T ss_pred             -cCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcccccccccccccceeeeC
Confidence             377888999999997 99999999999999999999998865332     122334445567664

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.91  E-value=2e-24  Score=151.53  Aligned_cols=109  Identities=28%  Similarity=0.492  Sum_probs=99.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC--CCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++.+|++++|||++++.+++.+ ..|+..+.....  +.|+++|+||+|+.....         
T Consensus        67 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------  136 (206)
T 2bov_A           67 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ---------  136 (206)
T ss_dssp             EECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC---------
T ss_pred             EcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccCcccccc---------
Confidence            89999999999999999999999999999999999998 899988887764  799999999999976543         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                       +..+++..+++.+++ +++++||++|.|++++|+.+++.+..
T Consensus       137 -~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          137 -VSVEEAKNRAEQWNV-NYVETSAKTRANVDKVFFDLMREIRA  177 (206)
T ss_dssp             -SCHHHHHHHHHHHTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             -ccHHHHHHHHHHhCC-eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence             477888999999997 99999999999999999999988864

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.91  E-value=3e-24  Score=150.73  Aligned_cols=123  Identities=28%  Similarity=0.481  Sum_probs=99.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+....  .++|+++|+||+|+.....         
T Consensus        77 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------  146 (201)
T 3oes_A           77 VDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLSPERE---------  146 (201)
T ss_dssp             EEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHH-HHHHHHHHC-----CCCEEEEEECTTCGGGCC---------
T ss_pred             EECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCccccc---------
Confidence            89999999999999999999999999999999999998 89998887763  4789999999999986544         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcchhhhhccCCCceee
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN  139 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~c~~~  139 (150)
                       +...++..+++.+++ +++++||+++.|++++|+.|++.+.......    .++.+|.+|
T Consensus       147 -v~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~~~----~~~~~c~l~  201 (201)
T 3oes_A          147 -VQAVEGKKLAESWGA-TFMESSARENQLTQGIFTKVIQEIARVENSY----GQERRCHLM  201 (201)
T ss_dssp             -SCHHHHHHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHHHC-----------------
T ss_pred             -cCHHHHHHHHHHhCC-eEEEEeCCCCCCHHHHHHHHHHHHHhhhhhh----ccccccccC
Confidence             477888999999998 9999999999999999999999998664332    224446654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.91  E-value=9.1e-24  Score=147.34  Aligned_cols=116  Identities=39%  Similarity=0.727  Sum_probs=103.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+...|+..+....++.|+++|+||+|+.....        ..+
T Consensus        76 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--------~~~  147 (194)
T 3reg_A           76 WDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGS--------DDV  147 (194)
T ss_dssp             EEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTT--------TCC
T ss_pred             EECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCC--------Ccc
Confidence            899999999999999999999999999999999999965789999988878899999999999975321        235


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  124 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  124 (150)
                      ..+++..+++.+++..++++||++|.|++++|+.+++.+...+.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  191 (194)
T 3reg_A          148 TKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNKP  191 (194)
T ss_dssp             CHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCSCC
T ss_pred             cHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhcCC
Confidence            78899999999998459999999999999999999999987643

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.91  E-value=5.9e-24  Score=151.01  Aligned_cols=124  Identities=32%  Similarity=0.613  Sum_probs=103.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||+|+++|..+++.+++++|++|+|||++++.+++.++..|+..+....++.|+++|+||+|+........  .+....
T Consensus        80 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  159 (214)
T 3q3j_B           80 WDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQA  159 (214)
T ss_dssp             EEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCC
T ss_pred             EECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccC
Confidence            899999999999999999999999999999999999944899999998888999999999999976311000  000112


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCC-HHHHHHHHHHHHhCCCc
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQN-VKAVFDAAIKVVIKPPQ  124 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~~~~~l~~~~~~~~~  124 (150)
                      .+..+++..+++.+++.+++++||+++.| |+++|+.+++.+.....
T Consensus       160 ~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          160 PISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             CCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             ccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence            35888999999999977999999999998 99999999999987643

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.91  E-value=5.6e-24  Score=146.79  Aligned_cols=110  Identities=25%  Similarity=0.518  Sum_probs=85.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+...          
T Consensus        62 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------  130 (183)
T 2fu5_C           62 WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------  130 (183)
T ss_dssp             EEC---------CCTTTTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----------
T ss_pred             EcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccCCccCc----------
Confidence            89999999999999999999999999999999999998 88999888764 5799999999999976433          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      +..+++..+++.+++ +++++||+++.|++++|+.+++.+...
T Consensus       131 v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~i~~~  172 (183)
T 2fu5_C          131 VSKERGEKLALDYGI-KFMETSAKANINVENAFFTLARDIKAK  172 (183)
T ss_dssp             SCHHHHHHHHHHHTC-EEEECCC---CCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            477888999999997 999999999999999999999998754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.91  E-value=9.5e-24  Score=145.26  Aligned_cols=122  Identities=76%  Similarity=1.265  Sum_probs=100.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|..++..+++++|++++|||++++.+++.+...|+..+....++.|+++|+||+|+.+.............+
T Consensus        61 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v  140 (182)
T 3bwd_D           61 WDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPI  140 (182)
T ss_dssp             ECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCC
T ss_pred             EECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCC
Confidence            89999999999999999999999999999999999998337999998877789999999999987643210001111234


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ..+++..+++.++..+++++||+++.|++++|+.+++.++++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  182 (182)
T 3bwd_D          141 TTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP  182 (182)
T ss_dssp             CHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHSCC
T ss_pred             CHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHhcC
Confidence            678888999999866999999999999999999999988753

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.90  E-value=2.6e-23  Score=143.37  Aligned_cols=124  Identities=53%  Similarity=0.898  Sum_probs=103.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+...|+..+....++.|+++|+||+|+........  ......
T Consensus        58 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  137 (186)
T 1mh1_A           58 WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT  137 (186)
T ss_dssp             ECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred             EECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccc
Confidence            899999999999999999999999999999999999983379999988777899999999999976421000  000112


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  124 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  124 (150)
                      .+..+++..+++.++..+++++||++|.|++++|+.+++.+.+++.
T Consensus       138 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  183 (186)
T 1mh1_A          138 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP  183 (186)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCCC
T ss_pred             cCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhcccc
Confidence            3577888899999886699999999999999999999999987654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.90  E-value=2.2e-23  Score=143.53  Aligned_cols=113  Identities=25%  Similarity=0.374  Sum_probs=99.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++++|++++|||++++.+++.+ ..|+..+....  .+.|+++|+||+|+.....         
T Consensus        59 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---------  128 (181)
T 3t5g_A           59 VDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV---------  128 (181)
T ss_dssp             EECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHC----CCEEEEEECTTCTTTCC---------
T ss_pred             EeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcce---------
Confidence            89999999999999999999999999999999999998 88988887664  4799999999999876543         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcc
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQK  125 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  125 (150)
                       +..+++..+++.+++ +++++||+++.|++++|+.+++.+......
T Consensus       129 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~  173 (181)
T 3t5g_A          129 -ISYEEGKALAESWNA-AFLESSAKENQTAVDVFRRIILEAEKMDGA  173 (181)
T ss_dssp             -SCHHHHHHHHHHTTC-EEEECCTTSHHHHHHHHHHHHHHHHTC---
T ss_pred             -ecHHHHHHHHHHhCC-cEEEEecCCCCCHHHHHHHHHHHHHHhcCC
Confidence             478899999999998 999999999999999999999999876543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.90  E-value=2e-23  Score=143.20  Aligned_cols=110  Identities=29%  Similarity=0.503  Sum_probs=101.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+....++.|+++|+||+|+.+...          +
T Consensus        63 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~  131 (181)
T 3tw8_B           63 WDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPERKV----------V  131 (181)
T ss_dssp             EEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHCTTSEEEEEEECTTCGGGCC----------S
T ss_pred             EcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCCCchhcc----------c
Confidence            89999999999999999999999999999999999998 899999998888899999999999877554          3


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ...+...++...++ +++++||+++.|++++|+.+.+.+...
T Consensus       132 ~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~  172 (181)
T 3tw8_B          132 ETEDAYKFAGQMGI-QLFETSAKENVNVEEMFNCITELVLRA  172 (181)
T ss_dssp             CHHHHHHHHHHHTC-CEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            77888899999997 999999999999999999999988754

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=5.2e-23  Score=143.35  Aligned_cols=122  Identities=48%  Similarity=0.903  Sum_probs=102.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccc--cCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL--ADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~--~~~~~~~   78 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+...|+..+....++.|+++|+||+|+.......  -.....+
T Consensus        71 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  150 (194)
T 2atx_A           71 YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEK  150 (194)
T ss_dssp             ECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCC
T ss_pred             EECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCc
Confidence            89999999999999999999999999999999999998338999998877789999999999997642100  0001112


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      .+..+++..+++.++..+++++||+++.|++++|+.+++.++.+
T Consensus       151 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~p  194 (194)
T 2atx_A          151 PICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP  194 (194)
T ss_dssp             CCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred             ccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHhcC
Confidence            35788899999999876899999999999999999999988753

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.90  E-value=2.1e-23  Score=146.65  Aligned_cols=111  Identities=28%  Similarity=0.478  Sum_probs=100.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....          
T Consensus        83 ~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------  151 (201)
T 2hup_A           83 WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSELRE----------  151 (201)
T ss_dssp             ECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------
T ss_pred             EECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCccccccc----------
Confidence            89999999999999999999999999999999999998 89999988766 5799999999999976543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      +..+++..+++.+++.+++++||+++.||+++|+.|++.+..+
T Consensus       152 v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~  194 (201)
T 2hup_A          152 VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR  194 (201)
T ss_dssp             SCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            4778889999999876899999999999999999999988753

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.90  E-value=4.5e-23  Score=144.40  Aligned_cols=122  Identities=45%  Similarity=0.768  Sum_probs=101.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+...|+..+....++.|+++|+||+|+........  ......
T Consensus        73 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~  152 (201)
T 2q3h_A           73 CDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEK  152 (201)
T ss_dssp             EECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred             EECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccc
Confidence            899999999999999999999999999999999999983379999988878899999999999976321000  000112


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      .+..+++..+++.++..+++++||+++.|++++|+.+++.+.++
T Consensus       153 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          153 PVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             CCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence            35778889999998866899999999999999999999988753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=9.9e-24  Score=147.20  Aligned_cols=109  Identities=24%  Similarity=0.421  Sum_probs=95.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccccccccCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      |||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+....   ++.|+++|+||+|+....         
T Consensus        61 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~---------  130 (199)
T 2gf0_A           61 TDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE---------  130 (199)
T ss_dssp             EECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTT-HHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS---------
T ss_pred             EeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccCCccc---------
Confidence            89999999999999999999999999999999999987 67776666543   478999999999987532         


Q ss_pred             CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                        +...++..+++.+++ +++++||+++.|++++|+.+++.+...
T Consensus       131 --~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~  172 (199)
T 2gf0_A          131 --VDTREAQAVAQEWKC-AFMETSAKMNYNVKELFQELLTLETRR  172 (199)
T ss_dssp             --SCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred             --cCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence              367788888999997 999999999999999999999988654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.89  E-value=4.3e-23  Score=141.50  Aligned_cols=111  Identities=22%  Similarity=0.303  Sum_probs=98.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCC-EEEEeeCCCcccccccccCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVP-VVLVGTKLDLREDKHYLADHPG   76 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~p-iilv~nK~D~~~~~~~~~~~~~   76 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+....   .+.| +++|+||+|+.+...       
T Consensus        61 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~-------  132 (178)
T 2hxs_A           61 WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT-------  132 (178)
T ss_dssp             EECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS-------
T ss_pred             EECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCeEEEEEEccccccccc-------
Confidence            89999999999999999999999999999999999998 88988887643   2456 899999999976543       


Q ss_pred             CCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           77 LVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                         +..+++..+++..++ +++++||+++.|++++|+.+++.+.+.+
T Consensus       133 ---~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  175 (178)
T 2hxs_A          133 ---IKPEKHLRFCQENGF-SSHFVSAKTGDSVFLCFQKVAAEILGIK  175 (178)
T ss_dssp             ---SCHHHHHHHHHHHTC-EEEEECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred             ---cCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence               367888899999997 9999999999999999999999998754

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.89  E-value=4.7e-23  Score=142.72  Aligned_cols=121  Identities=36%  Similarity=0.660  Sum_probs=100.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||||+++|..+++.+++++|++|+|||++++.+++.+...|+..+....++.|+++|+||+|+.+......  .+....
T Consensus        60 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  139 (184)
T 1m7b_A           60 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQT  139 (184)
T ss_dssp             EEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred             EECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccC
Confidence            899999999999999999999999999999999999875689998888778899999999999975311000  001123


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccC-CCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSK-TQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~~~~~l~~~~~~  121 (150)
                      .+..+++..+++.++..+++++||+ ++.|++++|+.+++.++.
T Consensus       140 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          140 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             CCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence            4678889999999885599999999 689999999999998864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.89  E-value=6.4e-23  Score=139.54  Aligned_cols=109  Identities=27%  Similarity=0.469  Sum_probs=92.4

Q ss_pred             CCCCCcccccc-cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC--CCCEEEEeeCCCcccccccccCCCCC
Q 031970            1 MNVIGQEDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         1 wDt~G~e~~~~-l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      |||+|++++.. ++..+++.+|++++|||++++.+++.+ ..|+..+....+  +.|+++|+||+|+.+...        
T Consensus        56 ~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--------  126 (169)
T 3q85_A           56 YDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE--------  126 (169)
T ss_dssp             ECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC--------
T ss_pred             EECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHH-HHHHHHHHhcccCCCCCEEEEeeCcchhhccc--------
Confidence            89999999976 788889999999999999999999998 889888887664  799999999999976544        


Q ss_pred             CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                        +..+++..+++.+++ +++++||+++.|++++|+.+++.+..
T Consensus       127 --~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~i~~  167 (169)
T 3q85_A          127 --VSLEEGRHLAGTLSC-KHIETSAALHHNTRELFEGAVRQIRL  167 (169)
T ss_dssp             --SCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             --CCHHHHHHHHHHcCC-cEEEecCccCCCHHHHHHHHHHHHHh
Confidence              488899999999998 99999999999999999999998764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.89  E-value=1e-22  Score=138.19  Aligned_cols=109  Identities=23%  Similarity=0.411  Sum_probs=83.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|..+++.+++.+|++++|||++++.+++.+ ..|+..+....  ++.|+++|+||+|+.+...         
T Consensus        54 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---------  123 (166)
T 3q72_A           54 YDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE---------  123 (166)
T ss_dssp             EECC---------------CCEEEEEEETTCHHHHHHH-HHHHHHHHHCC---CCCEEEEEECTTCCSSCC---------
T ss_pred             EECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccccccccc---------
Confidence            89999999999999999999999999999999999998 88888887653  5799999999999976544         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                       +..++...++...++ +++++||++|.|++++|+.+++.+..
T Consensus       124 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~  164 (166)
T 3q72_A          124 -VSVDEGRACAVVFDC-KFIETSAALHHNVQALFEGVVRQIRL  164 (166)
T ss_dssp             -SCHHHHHHHHHHTTC-EEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             -cCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHHHHHHHHHh
Confidence             478888899999997 99999999999999999999998753

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.4e-22  Score=144.53  Aligned_cols=112  Identities=27%  Similarity=0.476  Sum_probs=97.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....          
T Consensus        67 ~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------  135 (223)
T 3cpj_B           67 WDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHLRA----------  135 (223)
T ss_dssp             ECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHH-HHHHHHHHHHCC--CEEEEEECCGGGGGGCC----------
T ss_pred             EECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------
Confidence            89999999999999999999999999999999999998 89999888765 4799999999999976543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  124 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  124 (150)
                      +...++..+++..++ +++++||+++.||+++|+.|++.+.+...
T Consensus       136 v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  179 (223)
T 3cpj_B          136 VPTEESKTFAQENQL-LFTETSALNSENVDKAFEELINTIYQKVS  179 (223)
T ss_dssp             SCHHHHHHHHHHTTC-EEEECCCC-CCCHHHHHHHHHHHHTTCC-
T ss_pred             cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            467888899999997 99999999999999999999999986544

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.89  E-value=9.2e-23  Score=140.19  Aligned_cols=111  Identities=33%  Similarity=0.618  Sum_probs=98.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.....          
T Consensus        66 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~----------  134 (181)
T 2efe_B           66 WDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLDARK----------  134 (181)
T ss_dssp             EECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------
T ss_pred             EeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCccccccc----------
Confidence            89999999999999999999999999999999999998 89998888765 5799999999999976443          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      +..+++..+++..++ +++++||+++.|++++|+.|++.+...+
T Consensus       135 ~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  177 (181)
T 2efe_B          135 VTAEDAQTYAQENGL-FFMETSAKTATNVKEIFYEIARRLPRVQ  177 (181)
T ss_dssp             SCHHHHHHHHHHTTC-EEEECCSSSCTTHHHHHHHHHHTCC---
T ss_pred             CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            477888899999997 9999999999999999999999886654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.89  E-value=9.8e-23  Score=138.62  Aligned_cols=109  Identities=27%  Similarity=0.553  Sum_probs=91.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++++|++++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+...          
T Consensus        60 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------  128 (170)
T 1z08_A           60 WDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------  128 (170)
T ss_dssp             EECCCC-------CCSSTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----------
T ss_pred             EECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccc----------
Confidence            89999999999999999999999999999999999998 89988887654 4799999999999976543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +..+++..+++..++ +++++||+++.|++++|+.+++.+.+
T Consensus       129 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          129 VSIQEAESYAESVGA-KHYHTSAKQNKGIEELFLDLCKRMIE  169 (170)
T ss_dssp             SCHHHHHHHHHHTTC-EEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHhh
Confidence            377888899999997 99999999999999999999998764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.89  E-value=8.3e-23  Score=143.17  Aligned_cols=110  Identities=26%  Similarity=0.446  Sum_probs=97.8

Q ss_pred             CCCCCcccccc-cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCC
Q 031970            1 MNVIGQEDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         1 wDt~G~e~~~~-l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      |||+|++++.. +++.+++++|++|+|||++++.+|+.+ ..|+..+....  .++|+++|+||+|+.....        
T Consensus        77 ~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------  147 (195)
T 3cbq_A           77 YDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE--------  147 (195)
T ss_dssp             ECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC--------
T ss_pred             EecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeechhccccCC--------
Confidence            89999998875 888899999999999999999999998 88998887765  4799999999999976443        


Q ss_pred             CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                        +..+++..+++.+++ +++++||+++.|++++|+.+++.+...
T Consensus       148 --v~~~~~~~~a~~~~~-~~~e~Sa~~~~~v~~lf~~l~~~i~~~  189 (195)
T 3cbq_A          148 --VSLEEGRHLAGTLSC-KHIETSAALHHNTRELFEGAVRQIRLR  189 (195)
T ss_dssp             --SCHHHHHHHHHHTTC-EEEEEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred             --cCHHHHHHHHHHhCC-EEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence              477888899999997 999999999999999999999998754

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.89  E-value=8.1e-23  Score=144.99  Aligned_cols=122  Identities=42%  Similarity=0.831  Sum_probs=87.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||||+++|..+++.+++++|++|+|||++++.+++.+...|+..+....+++|+++|+||+|+........  ......
T Consensus        87 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  166 (214)
T 2j1l_A           87 WDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLE  166 (214)
T ss_dssp             EEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCC
T ss_pred             EECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccC
Confidence            899999999999999999999999999999999999984479999988778899999999999976431000  000012


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      .+..+++..+++.++..+++++||++|.|++++|+.+++.+.+.
T Consensus       167 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          167 PVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred             cccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence            35778889999999866999999999999999999999998754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.89  E-value=1.2e-22  Score=137.79  Aligned_cols=109  Identities=28%  Similarity=0.491  Sum_probs=98.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|..++..+++.+|++++|||++++.+++.+ ..|+..+....++.|+++|+||+|+.+...          +
T Consensus        59 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~----------~  127 (168)
T 1z2a_A           59 WDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------I  127 (168)
T ss_dssp             ECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----------S
T ss_pred             EcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccCcccc----------c
Confidence            89999999999999999999999999999999999998 889988877667899999999999976543          3


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      ..+++..+++.+++ +++++||+++.|++++|+.+.+.+.+
T Consensus       128 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          128 KNEEAEGLAKRLKL-RFYRTSVKEDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             CHHHHHHHHHHHTC-EEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            67888899999997 99999999999999999999998864

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.89  E-value=2e-22  Score=140.33  Aligned_cols=109  Identities=26%  Similarity=0.531  Sum_probs=99.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.....          
T Consensus        75 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------  143 (191)
T 2a5j_A           75 WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD----------  143 (191)
T ss_dssp             ECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------
T ss_pred             EECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCCccc----------
Confidence            89999999999999999999999999999999999998 88998888764 5799999999999976443          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +..+++..+++.+++ +++++||+++.|++++|+.|++.+.+
T Consensus       144 v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~  184 (191)
T 2a5j_A          144 VKREEGEAFAREHGL-IFMETSAKTACNVEEAFINTAKEIYR  184 (191)
T ss_dssp             SCHHHHHHHHHHHTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            477888899999997 99999999999999999999998874

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.89  E-value=7.7e-23  Score=142.21  Aligned_cols=108  Identities=24%  Similarity=0.424  Sum_probs=93.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccccccccCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPG   76 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~D~~~~~~~~~~~~~   76 (150)
                      |||+|+++|..+ ..+++.+|++|+|||++++.+++.+ ..|+..+....    .+.|+++|+||+|+.....       
T Consensus        74 ~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~-------  144 (187)
T 3c5c_A           74 MDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ-------  144 (187)
T ss_dssp             EECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS-------
T ss_pred             EECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc-------
Confidence            899999999886 6799999999999999999999998 88998888763    5899999999999976543       


Q ss_pred             CCccCHHHHHHHHHHcCCcEEEEecc-CCCCCHHHHHHHHHHHHhC
Q 031970           77 LVPVTTAQGEELRKQIGASYYIECSS-KTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~~~~~~l~~~~~~  121 (150)
                         +..+++..+++.+++ +++++|| +++.||+++|+.+++.+.+
T Consensus       145 ---v~~~~~~~~~~~~~~-~~~e~Sa~~~g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          145 ---VTKAEGVALAGRFGC-LFFEVSACLDFEHVQHVFHEAVREARR  186 (187)
T ss_dssp             ---SCHHHHHHHHHHHTC-EEEECCSSSCSHHHHHHHHHHHHHHHC
T ss_pred             ---cCHHHHHHHHHHcCC-cEEEEeecCccccHHHHHHHHHHHHhh
Confidence               477889999999998 9999999 8999999999999998754

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.89  E-value=2.2e-22  Score=141.48  Aligned_cols=110  Identities=24%  Similarity=0.473  Sum_probs=99.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.....          
T Consensus        62 ~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------  130 (206)
T 2bcg_Y           62 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----------  130 (206)
T ss_dssp             ECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------
T ss_pred             EeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------
Confidence            89999999999999999999999999999999999998 88998888765 5799999999999976543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      +..+++..++...++ +++++||+++.|++++|+.+++.+.+.
T Consensus       131 ~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~~  172 (206)
T 2bcg_Y          131 VEYDVAKEFADANKM-PFLETSALDSTNVEDAFLTMARQIKES  172 (206)
T ss_dssp             SCHHHHHHHHHHTTC-CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            367888889999997 999999999999999999999988643

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=1.6e-22  Score=138.82  Aligned_cols=110  Identities=30%  Similarity=0.584  Sum_probs=91.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....          
T Consensus        65 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------  133 (180)
T 2g6b_A           65 WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERV----------  133 (180)
T ss_dssp             EECCCC--------CCGGGCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------
T ss_pred             EeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccCcccc----------
Confidence            89999999999999999999999999999999999998 89998888766 5799999999999976543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      +..++...+++.+++ +++++||+++.|++++|+.+.+.+.+.
T Consensus       134 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~  175 (180)
T 2g6b_A          134 VKREDGEKLAKEYGL-PFMETSAKTGLNVDLAFTAIAKELKRR  175 (180)
T ss_dssp             SCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred             cCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            367788889999997 999999999999999999999988754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=5.1e-23  Score=145.08  Aligned_cols=109  Identities=29%  Similarity=0.574  Sum_probs=98.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+...          
T Consensus        80 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------  148 (201)
T 2ew1_A           80 WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE----------  148 (201)
T ss_dssp             EEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----------
T ss_pred             EECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------
Confidence            89999999999999999999999999999999999998 89999888765 4799999999999976543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +..+++..+++..++ +++++||++|.|++++|+.+++.+..
T Consensus       149 v~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~i~~  189 (201)
T 2ew1_A          149 VSQQRAEEFSEAQDM-YYLETSAKESDNVEKLFLDLACRLIS  189 (201)
T ss_dssp             SCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            467888889988887 99999999999999999999998875

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=1e-22  Score=144.81  Aligned_cols=109  Identities=24%  Similarity=0.434  Sum_probs=94.6

Q ss_pred             CCCCCccc-ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCC
Q 031970            1 MNVIGQED-YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         1 wDt~G~e~-~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      |||+|++. +..+.+.|++.++++|+|||++++.+|+.+ ..|...+.+..  +++|+++|+||+|+.....        
T Consensus        92 ~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~--------  162 (211)
T 2g3y_A           92 LDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE--------  162 (211)
T ss_dssp             ECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC--------
T ss_pred             eecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEChHHhcCce--------
Confidence            89999987 566788899999999999999999999998 78888776542  4799999999999976433        


Q ss_pred             CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                        +...+...++..+++ +++++||++|.||+++|+.+++.+..
T Consensus       163 --v~~~e~~~~a~~~~~-~~~e~SAk~g~~v~elf~~l~~~i~~  203 (211)
T 2g3y_A          163 --VSVSEGRACAVVFDC-KFIETSAAVQHNVKELFEGIVRQVRL  203 (211)
T ss_dssp             --SCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             --EeHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence              467778888888997 99999999999999999999998854

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.89  E-value=1.3e-22  Score=137.70  Aligned_cols=108  Identities=30%  Similarity=0.560  Sum_probs=97.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.....          
T Consensus        60 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----------  128 (170)
T 1r2q_A           60 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA----------  128 (170)
T ss_dssp             EEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------
T ss_pred             EeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccc----------
Confidence            89999999999999999999999999999999999998 88988887764 5899999999999976543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      +..+++..+++..++ +++++||+++.|++++|+.|++.+.
T Consensus       129 ~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~i~~~~~  168 (170)
T 1r2q_A          129 VDFQEAQSYADDNSL-LFMETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred             cCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            367888889999987 9999999999999999999998764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.89  E-value=3.9e-22  Score=140.00  Aligned_cols=121  Identities=43%  Similarity=0.794  Sum_probs=100.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+...|...+....++.|+++|+||+|+........  ......
T Consensus        78 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  157 (201)
T 2gco_A           78 WDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQE  157 (201)
T ss_dssp             ECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCC
T ss_pred             EECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccC
Confidence            899999999999999999999999999999999999875688888888777899999999999976421000  000112


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      .+..+++..+++..+..+++++||+++.|++++|+.+++.+++
T Consensus       158 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          158 PVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence            3577888899999987689999999999999999999988764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.89  E-value=8.1e-23  Score=140.94  Aligned_cols=109  Identities=29%  Similarity=0.533  Sum_probs=98.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++++|++++|||++++.+++.+ ..|+..+....  .+.|+++|+||+|+.+...         
T Consensus        71 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---------  140 (183)
T 3kkq_A           71 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK---------  140 (183)
T ss_dssp             EECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC---------
T ss_pred             EECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCCchhccC---------
Confidence            89999999999999999999999999999999999998 88988886532  5799999999999976443         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccC-CCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSK-TQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~~~~~l~~~~~~  121 (150)
                       +..+++..+++.+++ +++++||+ ++.|++++|+.+++.+.+
T Consensus       141 -v~~~~~~~~~~~~~~-~~~~~Sa~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          141 -VTRDQGKEMATKYNI-PYIETSAKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             -SCHHHHHHHHHHHTC-CEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             -cCHHHHHHHHHHhCC-eEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence             488899999999997 99999999 999999999999988764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=3.7e-23  Score=144.03  Aligned_cols=110  Identities=30%  Similarity=0.603  Sum_probs=100.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+...          
T Consensus        77 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------  145 (191)
T 3dz8_A           77 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEERV----------  145 (191)
T ss_dssp             ECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------
T ss_pred             EeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------
Confidence            89999999999999999999999999999999999998 88999998866 5899999999999976544          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      +...++..+++.+++ +++++||+++.|++++|+.+++.+.+.
T Consensus       146 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~  187 (191)
T 3dz8_A          146 VPTEKGQLLAEQLGF-DFFEASAKENISVRQAFERLVDAICDK  187 (191)
T ss_dssp             SCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            477888999999998 999999999999999999999988753

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.89  E-value=2.5e-22  Score=139.46  Aligned_cols=109  Identities=32%  Similarity=0.632  Sum_probs=98.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.....          
T Consensus        76 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------  144 (189)
T 2gf9_A           76 WDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERV----------  144 (189)
T ss_dssp             EECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------
T ss_pred             EeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccC----------
Confidence            89999999999999999999999999999999999998 88999888765 5799999999999976543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +..+++..+++.+++ +++++||+++.|++++|+.+++.+.+
T Consensus       145 ~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~  185 (189)
T 2gf9_A          145 VPAEDGRRLADDLGF-EFFEASAKENINVKQVFERLVDVICE  185 (189)
T ss_dssp             SCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            367888899999997 99999999999999999999998864

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.89  E-value=1.5e-22  Score=138.68  Aligned_cols=109  Identities=26%  Similarity=0.559  Sum_probs=98.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....          
T Consensus        69 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------  137 (179)
T 1z0f_A           69 WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD----------  137 (179)
T ss_dssp             EECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------
T ss_pred             EECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------
Confidence            89999999999999999999999999999999999998 89998888766 5899999999999976543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +..+++..+++.+++ +++++||+++.|++++|+.+++.+.+
T Consensus       138 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          138 VTYEEAKQFAEENGL-LFLEASAKTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            377888999999997 99999999999999999999988754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.89  E-value=1.1e-22  Score=141.55  Aligned_cols=111  Identities=29%  Similarity=0.527  Sum_probs=100.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....          
T Consensus        70 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------  138 (196)
T 3tkl_A           70 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------  138 (196)
T ss_dssp             EEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------
T ss_pred             EECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc----------
Confidence            89999999999999999999999999999999999998 88999888775 4799999999999976554          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      +...+...+++.+++ +++++||+++.|++++|+.+++.+.+..
T Consensus       139 ~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~i~~~~  181 (196)
T 3tkl_A          139 VDYTTAKEFADSLGI-PFLETSAKNATNVEQSFMTMAAEIKKRM  181 (196)
T ss_dssp             SCHHHHHHHHHHTTC-CEEEECTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            377888999999997 9999999999999999999999887543

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=1.3e-22  Score=141.48  Aligned_cols=111  Identities=26%  Similarity=0.518  Sum_probs=98.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.....          
T Consensus        77 ~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------  145 (192)
T 2fg5_A           77 WDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE----------  145 (192)
T ss_dssp             EEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------
T ss_pred             EcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------
Confidence            89999999999999999999999999999999999998 89999988775 4799999999999975433          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      +..+++..+++.+++ +++++||+++.|++++|+.|.+.+.+.+
T Consensus       146 v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  188 (192)
T 2fg5_A          146 VPLKDAKEYAESIGA-IVVETSAKNAINIEELFQGISRQIPPLD  188 (192)
T ss_dssp             SCHHHHHHHHHTTTC-EEEECBTTTTBSHHHHHHHHHHTCC---
T ss_pred             cCHHHHHHHHHHcCC-EEEEEeCCCCcCHHHHHHHHHHHHHhhC
Confidence            477889999999997 9999999999999999999999886543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.88  E-value=1.2e-22  Score=143.06  Aligned_cols=119  Identities=54%  Similarity=0.910  Sum_probs=100.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+...|+..+....++.|+++|+||+|+........  .+....
T Consensus        83 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  162 (204)
T 4gzl_A           83 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT  162 (204)
T ss_dssp             EEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred             EECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccc
Confidence            899999999999999999999999999999999999984489999998878899999999999976432100  000112


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      .+..+++..+++.++..+++++||++|.|++++|+.+++.+
T Consensus       163 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          163 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            25778889999999987899999999999999999998765

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.88  E-value=3.1e-22  Score=135.97  Aligned_cols=108  Identities=23%  Similarity=0.529  Sum_probs=97.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.....          
T Consensus        60 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~----------  128 (170)
T 1z0j_A           60 WDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----------  128 (170)
T ss_dssp             EEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----------
T ss_pred             EcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCccccccc----------
Confidence            89999999999999999999999999999999999998 89999888764 6799999999999976543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      +..++...+++..++ +++++||+++.|++++|+.+.+.+.
T Consensus       129 v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          129 VMERDAKDYADSIHA-IFVETSAKNAININELFIEISRRIP  168 (170)
T ss_dssp             SCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred             cCHHHHHHHHHHcCC-EEEEEeCCCCcCHHHHHHHHHHHHh
Confidence            367888899999997 9999999999999999999998775

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.88  E-value=1e-22  Score=142.93  Aligned_cols=108  Identities=28%  Similarity=0.488  Sum_probs=94.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccccccccCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHP   75 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~D~~~~~~~~~~~~   75 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+....     .+.|+++|+||+|+....       
T Consensus        62 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------  133 (207)
T 1vg8_A           62 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-------  133 (207)
T ss_dssp             EEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-------
T ss_pred             EeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHH-HHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-------
Confidence            89999999999999999999999999999999999998 88988877554     378999999999997322       


Q ss_pred             CCCccCHHHHHHHHH-HcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           76 GLVPVTTAQGEELRK-QIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        76 ~~~~v~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                          +..+++..++. ..+. +++++||++|.|++++|+.|++.+..
T Consensus       134 ----~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~~~~  175 (207)
T 1vg8_A          134 ----VATKRAQAWCYSKNNI-PYFETSAKEAINVEQAFQTIARNALK  175 (207)
T ss_dssp             ----SCHHHHHHHHHHTTSC-CEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ----cCHHHHHHHHHhcCCc-eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence                36677888887 4454 89999999999999999999988864

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.88  E-value=1.5e-22  Score=138.32  Aligned_cols=109  Identities=23%  Similarity=0.415  Sum_probs=90.2

Q ss_pred             CCCCCccc--ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCC
Q 031970            1 MNVIGQED--YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPG   76 (150)
Q Consensus         1 wDt~G~e~--~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~   76 (150)
                      |||+|++.  +..+...+++.+|++++|||++++.+++.+ ..|...+....  ++.|+++|+||+|+.+...       
T Consensus        57 ~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~-------  128 (175)
T 2nzj_A           57 VDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCRE-------  128 (175)
T ss_dssp             ECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHH-HHHHHHHHHCC----CCEEEEEECTTCTTTCC-------
T ss_pred             EecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhhccCCCCEEEEEEChhhccccc-------
Confidence            89999998  677778899999999999999999999998 88988887653  4799999999999976543       


Q ss_pred             CCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           77 LVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                         +..++...++..+++ +++++||++|.|++++|+.|++.+..
T Consensus       129 ---v~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~~~~  169 (175)
T 2nzj_A          129 ---VSVEEGRACAVVFDC-KFIETSATLQHNVAELFEGVVRQLRL  169 (175)
T ss_dssp             ---SCHHHHHHHHHHHTS-EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ---cCHHHHHHHHHHcCC-eEEEEecCCCCCHHHHHHHHHHHHHH
Confidence               367788888888997 99999999999999999999998864

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.88  E-value=3.8e-23  Score=143.69  Aligned_cols=109  Identities=22%  Similarity=0.253  Sum_probs=96.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCC------ChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLV------SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH   74 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~------~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~   74 (150)
                      |||||+++|..+++.+++++|++|+|||++      +..+++.+ ..|+..+....++.|+++|+||+|+...       
T Consensus        79 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~~-------  150 (198)
T 3t1o_A           79 YTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPDA-------  150 (198)
T ss_dssp             EECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTTC-------
T ss_pred             EeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhcccc-------
Confidence            899999999999999999999999999999      56788887 7888888655578999999999998764       


Q ss_pred             CCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           75 PGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                           +..+++..+++.+++.+++++||+++.|++++|+.+++.+.+.
T Consensus       151 -----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          151 -----LPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             -----CCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             -----cCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence                 3778889999988866899999999999999999999988753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.88  E-value=1.6e-22  Score=142.92  Aligned_cols=121  Identities=36%  Similarity=0.660  Sum_probs=100.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||+|+++|..++..+++++|++|+|||++++.+++.+...|+..+.+..++.|+++|+||+|+........  .+....
T Consensus        81 ~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  160 (205)
T 1gwn_A           81 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQT  160 (205)
T ss_dssp             EEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred             EeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccC
Confidence            899999999999999999999999999999999999875689999988778899999999999975311000  001123


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccC-CCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSK-TQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~~~~~l~~~~~~  121 (150)
                      .+..+++..+++.++..+++++||+ ++.||+++|+.+++.++.
T Consensus       161 ~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          161 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             CCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            4677889999999884499999999 689999999999988763

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=5.9e-22  Score=139.70  Aligned_cols=123  Identities=42%  Similarity=0.769  Sum_probs=102.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+...|+..+....++.|+++|+||+|+........  ......
T Consensus        78 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  157 (207)
T 2fv8_A           78 WDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQE  157 (207)
T ss_dssp             EECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCC
T ss_pred             EECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccC
Confidence            899999999999999999999999999999999999875678888888777899999999999976421000  000012


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      .+...++..+++..+..+++++||+++.|++++|+.+++.++.+.
T Consensus       158 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~~  202 (207)
T 2fv8_A          158 PVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKR  202 (207)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred             CCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence            257778888999988768999999999999999999999988653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.88  E-value=1.4e-22  Score=137.12  Aligned_cols=109  Identities=28%  Similarity=0.490  Sum_probs=95.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC--CCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++.+|++++|||++++.+++.+ ..|+..+.....  +.|+++|+||+|+.+...         
T Consensus        57 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------  126 (168)
T 1u8z_A           57 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ---------  126 (168)
T ss_dssp             EECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC---------
T ss_pred             EECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccccccCc---------
Confidence            89999999999999999999999999999999999998 889888887653  799999999999976543         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                       +..+++..+++.+++ +++++||+++.|++++|+.+++.+.+
T Consensus       127 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          127 -VSVEEAKNRADQWNV-NYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             -SCHHHHHHHHHHHTC-EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             -cCHHHHHHHHHHcCC-eEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence             377888999999997 99999999999999999999998764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.88  E-value=2.7e-22  Score=136.25  Aligned_cols=109  Identities=29%  Similarity=0.555  Sum_probs=97.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+....           
T Consensus        57 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-----------  124 (170)
T 1g16_A           57 WDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETRV-----------  124 (170)
T ss_dssp             ECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTCC-----------
T ss_pred             EeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCCcCc-----------
Confidence            89999999999999999999999999999999999998 89998888765 579999999999994322           


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      +..+++..+++.+++ +++++||+++.|++++|+.+.+.+.+.
T Consensus       125 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          125 VTADQGEALAKELGI-PFIESSAKNDDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             SCHHHHHHHHHHHTC-CEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            367888889999997 999999999999999999999988754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.88  E-value=1.8e-22  Score=141.71  Aligned_cols=109  Identities=25%  Similarity=0.511  Sum_probs=98.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.....          
T Consensus        79 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------  147 (200)
T 2o52_A           79 WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPERE----------  147 (200)
T ss_dssp             ECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGGGGCC----------
T ss_pred             EcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc----------
Confidence            89999999999999999999999999999999999998 89988887655 5799999999999976543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +...++..+++..++ +++++||+++.|++++|+.+++.+..
T Consensus       148 v~~~~~~~~~~~~~~-~~~~~SA~~g~gi~~l~~~l~~~i~~  188 (200)
T 2o52_A          148 VTFLEASRFAQENEL-MFLETSALTGENVEEAFLKCARTILN  188 (200)
T ss_dssp             SCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            367888889999997 99999999999999999999998875

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.88  E-value=2.7e-22  Score=136.11  Aligned_cols=111  Identities=27%  Similarity=0.486  Sum_probs=97.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++++|++++|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.....       ...
T Consensus        57 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~  128 (170)
T 1ek0_A           57 WDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQEGG-------ERK  128 (170)
T ss_dssp             EEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSSC-------CCC
T ss_pred             EECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc-------ccC
Confidence            89999999999999999999999999999999999998 88988888765 5799999999999976421       123


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      +..+....+++..++ +++++||+++.|++++|+.+.+.+.
T Consensus       129 v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~  168 (170)
T 1ek0_A          129 VAREEGEKLAEEKGL-LFFETSAKTGENVNDVFLGIGEKIP  168 (170)
T ss_dssp             SCHHHHHHHHHHHTC-EEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred             CCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            577888899999997 9999999999999999999987764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.88  E-value=3.5e-22  Score=137.93  Aligned_cols=109  Identities=24%  Similarity=0.491  Sum_probs=98.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....          
T Consensus        64 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------  132 (186)
T 2bme_A           64 WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE----------  132 (186)
T ss_dssp             EEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------
T ss_pred             EeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------
Confidence            89999999999999999999999999999999999998 88988887664 5799999999999976443          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +...++..+++..++ +++++||+++.|++++|+.+++.+.+
T Consensus       133 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~  173 (186)
T 2bme_A          133 VTFLEASRFAQENEL-MFLETSALTGENVEEAFVQCARKILN  173 (186)
T ss_dssp             SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCC-EEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            377888899999997 99999999999999999999998875

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.88  E-value=1.3e-22  Score=140.51  Aligned_cols=110  Identities=28%  Similarity=0.509  Sum_probs=99.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+....  .+.|+++|+||+|+.....         
T Consensus        75 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------  144 (195)
T 3bc1_A           75 WDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQRA---------  144 (195)
T ss_dssp             EEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGGCC---------
T ss_pred             EeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc---------
Confidence            89999999999999999999999999999999999998 89998888766  4799999999999976543         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                       +..+++..++..+++ +++++||+++.|++++|+.|.+.+.+.
T Consensus       145 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~  186 (195)
T 3bc1_A          145 -VKEEEARELAEKYGI-PYFETSAANGTNISHAIEMLLDLIMKR  186 (195)
T ss_dssp             -SCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             -cCHHHHHHHHHHcCC-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence             367888899999997 999999999999999999999988753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.88  E-value=3e-22  Score=135.71  Aligned_cols=109  Identities=24%  Similarity=0.517  Sum_probs=96.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++++|++++|||++++.+++.+ ..|+..+....  ++.|+++|+||+|+.+...         
T Consensus        56 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------  125 (167)
T 1c1y_A           56 LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV---------  125 (167)
T ss_dssp             EEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC---------
T ss_pred             EECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhhCcCCCcEEEEEECcccccccc---------
Confidence            89999999999999999999999999999999999998 78888877652  5799999999999976543         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                       +..+++..+++.++..+++++||++|.|++++|+.+++.+.
T Consensus       126 -~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          126 -VGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             -SCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             -CCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence             36788888998883349999999999999999999998774

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.88  E-value=3.3e-22  Score=138.88  Aligned_cols=108  Identities=22%  Similarity=0.325  Sum_probs=93.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|.     +++++|++++|||++++.+|+.+ ..|+..+....  .+.|+++|+||+|+.....        .
T Consensus        72 ~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------~  137 (184)
T 3ihw_A           72 RDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISAANP--------R  137 (184)
T ss_dssp             EECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHTTSCGGGSCEEEEEECTTCBTTBC--------C
T ss_pred             EECCCChhhh-----eecCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc--------c
Confidence            8999999987     88899999999999999999998 88999998765  4799999999999853211        2


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      .+..+++..+++.++..+++++||+++.||+++|+.+++.+.+.
T Consensus       138 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~  181 (184)
T 3ihw_A          138 VIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL  181 (184)
T ss_dssp             CSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence            35788999999999744999999999999999999999988753

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.88  E-value=3.7e-22  Score=136.97  Aligned_cols=111  Identities=31%  Similarity=0.522  Sum_probs=85.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccccccccCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHP   75 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~D~~~~~~~~~~~~   75 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+....     .+.|+++|+||+|+.....      
T Consensus        63 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------  135 (182)
T 1ky3_A           63 WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK------  135 (182)
T ss_dssp             ECCC----------CCSTTCCEEEEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC------
T ss_pred             EECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHH-HHHHHHHHHHhcccCcCCCcEEEEEECCccccccc------
Confidence            89999999999999999999999999999999999998 88988877643     5799999999999864332      


Q ss_pred             CCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           76 GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                         .+...++..+++..+..+++++||+++.|++++|+.+++.+.+
T Consensus       136 ---~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  178 (182)
T 1ky3_A          136 ---IVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ  178 (182)
T ss_dssp             ---CSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ---cCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence               1467788888885443489999999999999999999998864

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.88  E-value=1.5e-22  Score=142.00  Aligned_cols=111  Identities=20%  Similarity=0.318  Sum_probs=90.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC----CCCEEEEeeCCCccc-ccccccCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP----GVPVVLVGTKLDLRE-DKHYLADHP   75 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~----~~piilv~nK~D~~~-~~~~~~~~~   75 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+....+    +.|+++|+||+|+.. ...      
T Consensus        78 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~------  150 (208)
T 2yc2_C           78 LDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ------  150 (208)
T ss_dssp             EETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC-------C------
T ss_pred             EECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccchhhcc------
Confidence            89999999999999999999999999999999999998 899999987654    799999999999976 333      


Q ss_pred             CCCccCHHHHHHHHHHcCCcEEEEeccCC-CCCHHHHHHHHHHHHhCCC
Q 031970           76 GLVPVTTAQGEELRKQIGASYYIECSSKT-QQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~-~~~i~~~~~~l~~~~~~~~  123 (150)
                          +..+++..+++.+++ +++++||++ +.|++++|+.+++.+.+..
T Consensus       151 ----v~~~~~~~~~~~~~~-~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~  194 (208)
T 2yc2_C          151 ----VRLDMAQDWATTNTL-DFFDVSANPPGKDADAPFLSIATTFYRNY  194 (208)
T ss_dssp             ----CCHHHHHHHHHHTTC-EEEECCC-------CHHHHHHHHHHHHHH
T ss_pred             ----CCHHHHHHHHHHcCC-EEEEeccCCCCcCHHHHHHHHHHHHHHHH
Confidence                477889999999997 999999999 9999999999999887543

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.88  E-value=4.7e-22  Score=139.41  Aligned_cols=109  Identities=29%  Similarity=0.615  Sum_probs=98.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....          
T Consensus        62 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------  130 (203)
T 1zbd_A           62 WDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----------  130 (203)
T ss_dssp             EEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTTSCC----------
T ss_pred             EECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCcccc----------
Confidence            89999999999999999999999999999999999998 88999888765 5799999999999976443          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +..+++..+++.+++ +++++||+++.|++++|+.|++.+.+
T Consensus       131 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~  171 (203)
T 1zbd_A          131 VSSERGRQLADHLGF-EFFEASAKDNINVKQTFERLVDVICE  171 (203)
T ss_dssp             SCHHHHHHHHHHHTC-EEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHCCC-eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            377888899999997 99999999999999999999988864

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=7.5e-22  Score=137.10  Aligned_cols=110  Identities=28%  Similarity=0.598  Sum_probs=98.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+....  .++|+++|+||+|+....          
T Consensus        69 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~----------  137 (195)
T 1x3s_A           69 WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE----------  137 (195)
T ss_dssp             EEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSCC----------
T ss_pred             EeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCcEEEEEECCcCcccc----------
Confidence            89999999999999999999999999999999999998 89999988765  479999999999985422          


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                       +..+++..+++..++ +++++||+++.|++++|+.|++.+...+
T Consensus       138 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  180 (195)
T 1x3s_A          138 -VDRNEGLKFARKHSM-LFIEASAKTCDGVQCAFEELVEKIIQTP  180 (195)
T ss_dssp             -SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred             -cCHHHHHHHHHHcCC-EEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence             367888899999997 9999999999999999999999998654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.87  E-value=2.9e-22  Score=139.43  Aligned_cols=109  Identities=28%  Similarity=0.513  Sum_probs=98.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....          
T Consensus        79 ~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------  147 (193)
T 2oil_A           79 WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQARE----------  147 (193)
T ss_dssp             EEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGGGCC----------
T ss_pred             EeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCcccccc----------
Confidence            89999999999999999999999999999999999988 88988887764 5799999999999976543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +...++..+++..++ +++++||+++.|++++|+.|++.+.+
T Consensus       148 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~  188 (193)
T 2oil_A          148 VPTEEARMFAENNGL-LFLETSALDSTNVELAFETVLKEIFA  188 (193)
T ss_dssp             SCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            367888889999997 99999999999999999999998864

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.87  E-value=7.5e-22  Score=137.96  Aligned_cols=110  Identities=24%  Similarity=0.438  Sum_probs=92.2

Q ss_pred             CCCCCccc-ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCC
Q 031970            1 MNVIGQED-YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         1 wDt~G~e~-~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      |||+|++. +..+++.|++.+|++++|||++++.+|+.+ ..|...+....  ++.|+++|+||+|+.....        
T Consensus        61 ~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~--------  131 (192)
T 2cjw_A           61 LDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRXRE--------  131 (192)
T ss_dssp             ECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECTTCGGGCC--------
T ss_pred             EEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCeEEEEEechhhhcccc--------
Confidence            89999887 566888899999999999999999999998 88887776643  4799999999999875433        


Q ss_pred             CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                        +...++..++..+++ +++++||++|.||+++|+.+++.+...
T Consensus       132 --v~~~~~~~~a~~~~~-~~~e~SA~~g~~v~~lf~~l~~~~~~~  173 (192)
T 2cjw_A          132 --VSVSEGRAXAVVFDX-KFIETSAAVQHNVKELFEGIVRQVRLR  173 (192)
T ss_dssp             --SCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             --ccHHHHHHHHHHhCC-ceEEeccccCCCHHHHHHHHHHHHHhh
Confidence              366777788888887 999999999999999999999988643

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.87  E-value=3.8e-22  Score=136.82  Aligned_cols=110  Identities=28%  Similarity=0.494  Sum_probs=97.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh-C-CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~-~-~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++.+|++++|||++++.+++.+ ..|+..+.+. . .+.|+++|+||+|+.....         
T Consensus        62 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---------  131 (181)
T 2fn4_A           62 LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ---------  131 (181)
T ss_dssp             EECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC---------
T ss_pred             EECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc---------
Confidence            89999999999999999999999999999999999998 7888877443 2 4799999999999976543         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                       +...+...++...++ +++++||+++.|++++|+.+.+.+.+.
T Consensus       132 -v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~~~  173 (181)
T 2fn4_A          132 -VPRSEASAFGASHHV-AYFEASAKLRLNVDEAFEQLVRAVRKY  173 (181)
T ss_dssp             -SCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             -cCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence             367888889999987 999999999999999999999988643

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.87  E-value=3.1e-22  Score=139.58  Aligned_cols=110  Identities=28%  Similarity=0.583  Sum_probs=97.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....          
T Consensus        80 ~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~----------  148 (192)
T 2il1_A           80 WDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------  148 (192)
T ss_dssp             EEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------
T ss_pred             EeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------
Confidence            89999999999999999999999999999999999998 89998888765 4799999999999976543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +..+++..+++.++..+++++||+++.|++++|+.|++.+.+
T Consensus       149 v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          149 ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             SCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            367788888888533499999999999999999999988764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.87  E-value=1.2e-21  Score=134.17  Aligned_cols=110  Identities=33%  Similarity=0.603  Sum_probs=95.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccccccccCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHP   75 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~D~~~~~~~~~~~~   75 (150)
                      |||||+++|..++..+++.+|++++|||++++.+++.+ ..|+..+....     .+.|+++|+||+|+....       
T Consensus        61 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-------  132 (177)
T 1wms_A           61 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-------  132 (177)
T ss_dssp             EECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-------
T ss_pred             EeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCcccccc-------
Confidence            89999999999999999999999999999999999998 88988887543     478999999999987322       


Q ss_pred             CCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           76 GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                          +..+++..+++..+..+++++||+++.|++++|+.+++.+.+.
T Consensus       133 ----~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          133 ----VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             ----SCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             ----cCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence                3678888888844434999999999999999999999998764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.87  E-value=5.7e-22  Score=136.58  Aligned_cols=109  Identities=28%  Similarity=0.492  Sum_probs=98.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC--CCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++.+|++++|||++++.+++.+ ..|+..+.....  +.|+++|+||+|+.+...         
T Consensus        71 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------  140 (187)
T 2a9k_A           71 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ---------  140 (187)
T ss_dssp             EECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC---------
T ss_pred             EECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccCc---------
Confidence            89999999999999999999999999999999999998 889888887654  799999999999976543         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                       +...++..+++.+++ +++++||+++.|++++|+.|++.+..
T Consensus       141 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~  181 (187)
T 2a9k_A          141 -VSVEEAKNRAEQWNV-NYVETSAKTRANVDKVFFDLMREIRA  181 (187)
T ss_dssp             -SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             -cCHHHHHHHHHHcCC-eEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence             377888899999997 99999999999999999999998863

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.87  E-value=5e-22  Score=139.17  Aligned_cols=115  Identities=27%  Similarity=0.447  Sum_probs=97.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+......    .....
T Consensus        82 ~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~----~~~~~  156 (199)
T 2p5s_A           82 WDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRDTAAT----EGQKC  156 (199)
T ss_dssp             EECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTH-HHHHHHHHHHC---CCEEEEEECGGGHHHHHH----TTCCC
T ss_pred             EECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccccccccc----ccccc
Confidence            89999999999999999999999999999999999998 88998888765 47999999999999743210    01123


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +..+++..+++.+++ +++++||+++.|++++|+.|++.+.+
T Consensus       157 v~~~~~~~~~~~~~~-~~~~~SA~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          157 VPGHFGEKLAMTYGA-LFCETSAKDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             CCHHHHHHHHHHHTC-EEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHcCC-eEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            577888899999997 99999999999999999999998864

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.87  E-value=1.6e-22  Score=143.29  Aligned_cols=110  Identities=33%  Similarity=0.563  Sum_probs=99.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+....  .+.|+++|+||+|+.....         
T Consensus        89 ~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~---------  158 (217)
T 2f7s_A           89 WDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE---------  158 (217)
T ss_dssp             EEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC---------
T ss_pred             EECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCccccccc---------
Confidence            89999999999999999999999999999999999998 89998887655  5799999999999976543         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                       +...++..+++.+++ +++++||+++.|++++|+.|++.+.+.
T Consensus       159 -v~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~~  200 (217)
T 2f7s_A          159 -VNERQARELADKYGI-PYFETSAATGQNVEKAVETLLDLIMKR  200 (217)
T ss_dssp             -SCHHHHHHHHHHTTC-CEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             -cCHHHHHHHHHHCCC-cEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence             367888999999997 999999999999999999999988753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.87  E-value=6.8e-22  Score=135.33  Aligned_cols=109  Identities=29%  Similarity=0.522  Sum_probs=96.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+...          
T Consensus        68 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------  136 (179)
T 2y8e_A           68 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------  136 (179)
T ss_dssp             EEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECGGGGGGCC----------
T ss_pred             EECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccCc----------
Confidence            89999999999999999999999999999999999998 88988887654 4799999999999976543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +...+...+++..++ +++++||+++.|++++|+.+.+.+..
T Consensus       137 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          137 VSTEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPG  177 (179)
T ss_dssp             SCHHHHHHHHHHHTC-EEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred             CCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            367888889999997 99999999999999999999987643

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.86  E-value=7.9e-22  Score=136.94  Aligned_cols=108  Identities=25%  Similarity=0.431  Sum_probs=94.3

Q ss_pred             CCCCCccccc-ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCC
Q 031970            1 MNVIGQEDYN-RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         1 wDt~G~e~~~-~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      |||||+++|. .++..+++++|++|+|||++++.+++.+ ..|+..+....  .+.|+++|+||+|+.....        
T Consensus        74 ~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------  144 (189)
T 1z06_A           74 WDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ--------  144 (189)
T ss_dssp             EECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC--------
T ss_pred             EECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce--------
Confidence            8999999998 8899999999999999999999999998 88998888764  5799999999999976543        


Q ss_pred             CccCHHHHHHHHHHcCCcEEEEeccCCC---CCHHHHHHHHHHHHh
Q 031970           78 VPVTTAQGEELRKQIGASYYIECSSKTQ---QNVKAVFDAAIKVVI  120 (150)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~~~~~~l~~~~~  120 (150)
                        +..+++..+++.+++ +++++||+++   .|+.++|+.|++.+.
T Consensus       145 --v~~~~~~~~~~~~~~-~~~~~Sa~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          145 --VPTDLAQKFADTHSM-PLFETSAKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             --SCHHHHHHHHHHTTC-CEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred             --eCHHHHHHHHHHcCC-EEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence              377888899999997 9999999999   999999999988764

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.86  E-value=3.3e-22  Score=142.17  Aligned_cols=109  Identities=28%  Similarity=0.485  Sum_probs=97.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||+|+++|..++..+++++|++|+|||++++.+++.+ ..|+..+....++.|+++|+||+|+.+...           
T Consensus        69 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-----------  136 (221)
T 3gj0_A           69 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV-----------  136 (221)
T ss_dssp             EEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTH-HHHHHHHHHHSTTCCEEEEEECTTSSSCSS-----------
T ss_pred             EeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCccccccc-----------
Confidence            89999999999999999999999999999999999998 899999998888899999999999976432           


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                       ..+...+++..++ +++++||+++.|++++|+.+++.+...+
T Consensus       137 -~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~l~~~~  177 (221)
T 3gj0_A          137 -KAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLWLARKLIGDP  177 (221)
T ss_dssp             -CGGGCCHHHHHTC-EEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred             -cHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence             1244567777887 9999999999999999999999997654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.86  E-value=3.3e-21  Score=134.24  Aligned_cols=107  Identities=26%  Similarity=0.486  Sum_probs=95.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+....+ .|+++|+||+| .....          +
T Consensus        98 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~-~piilv~NK~D-~~~~~----------~  164 (208)
T 3clv_A           98 WDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISSN-YIIILVANKID-KNKFQ----------V  164 (208)
T ss_dssp             EECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSC-CEEEEEEECTT-CC-CC----------S
T ss_pred             EECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhCC-CcEEEEEECCC-ccccc----------C
Confidence            89999999999999999999999999999999999998 899988887654 99999999999 33222          4


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      ..+++..+++..++ +++++||+++.|++++|+.+++.+.+
T Consensus       165 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          165 DILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             CHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            77889999999997 99999999999999999999988763

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.86  E-value=1e-21  Score=139.23  Aligned_cols=111  Identities=26%  Similarity=0.420  Sum_probs=97.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|++++..++..+++++|++|+|||++++.+++.+ ..|+..+..... +.|+++|+||+|+.+...          
T Consensus        66 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------  134 (218)
T 4djt_A           66 WDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKNRQK----------  134 (218)
T ss_dssp             EEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHCSSSCEEEEEECTTCC--------------
T ss_pred             EecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------
Confidence            89999999999999999999999999999999999998 899988887654 599999999999976533          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      +....+..++...++ +++++||++|.|++++|+.+++.+.+..
T Consensus       135 ~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  177 (218)
T 4djt_A          135 ISKKLVMEVLKGKNY-EYFEISAKTAHNFGLPFLHLARIFTGRP  177 (218)
T ss_dssp             CCHHHHHHHTTTCCC-EEEEEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred             cCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence            477888888888887 9999999999999999999999997654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.86  E-value=6.8e-22  Score=137.84  Aligned_cols=113  Identities=13%  Similarity=0.128  Sum_probs=88.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---------CCCCEEEEeeCCCcccccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---------PGVPVVLVGTKLDLREDKHYL   71 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---------~~~piilv~nK~D~~~~~~~~   71 (150)
                      |||+|+++|..++..+++++|++|+|||++++.+|+.+ ..|+..+....         .+.|+++|+||+|+...... 
T Consensus        68 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~-  145 (199)
T 4bas_A           68 FDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA-  145 (199)
T ss_dssp             EEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH-
T ss_pred             EECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH-
Confidence            89999999999999999999999999999999999998 77877776541         27999999999999765321 


Q ss_pred             cCCCCCCccCHHHHH-HHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           72 ADHPGLVPVTTAQGE-ELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        72 ~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                            ..+...... .+++..++ +++++||+++.||+++|+.|++.+...
T Consensus       146 ------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~~~~~  190 (199)
T 4bas_A          146 ------AELVEILDLTTLMGDHPF-VIFASNGLKGTGVHEGFSWLQETASRQ  190 (199)
T ss_dssp             ------HHHHHHHTHHHHHTTSCE-EEEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHhcchhhccCCee-EEEEeeCCCccCHHHHHHHHHHHHHHH
Confidence                  001111111 11244565 899999999999999999999998754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.86  E-value=6.2e-22  Score=133.85  Aligned_cols=108  Identities=27%  Similarity=0.566  Sum_probs=96.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++.+|++++|||++++.+++.+ ..|...+....  .+.|+++|+||+|+.+...         
T Consensus        56 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---------  125 (167)
T 1kao_A           56 LDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE---------  125 (167)
T ss_dssp             EECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC---------
T ss_pred             EECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCccccccc---------
Confidence            89999999999999999999999999999999999998 78888777654  4799999999999876543         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                       +...+...+++.+++ +++++||+++.|++++|+.+++.+.
T Consensus       126 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          126 -VSSSEGRALAEEWGC-PFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             -SCHHHHHHHHHHHTS-CEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHhCC-CEEEecCCCCcCHHHHHHHHHHHHh
Confidence             367888889999997 9999999999999999999998764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=6.2e-22  Score=134.60  Aligned_cols=109  Identities=25%  Similarity=0.468  Sum_probs=95.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccccccccCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      |||||+++|..++..+++.+|++++|||++++.+++.+ ..|+..+.+..   ++.|+++|+||+|+.....        
T Consensus        56 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~--------  126 (172)
T 2erx_A           56 TDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE--------  126 (172)
T ss_dssp             EECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC--------
T ss_pred             EECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEccccccccc--------
Confidence            89999999999999999999999999999999999987 77877776543   4799999999999976543        


Q ss_pred             CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                        +...+...+++.+++ +++++||+++.|++++|+.+++.+..
T Consensus       127 --v~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~  167 (172)
T 2erx_A          127 --VQSSEAEALARTWKC-AFMETSAKLNHNVKELFQELLNLEKR  167 (172)
T ss_dssp             --SCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred             --cCHHHHHHHHHHhCC-eEEEecCCCCcCHHHHHHHHHHHHhh
Confidence              366778888888887 99999999999999999999987654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.86  E-value=1.1e-21  Score=134.59  Aligned_cols=108  Identities=23%  Similarity=0.301  Sum_probs=88.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh---C-CCCCEEEEeeCCCcccccccccCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY---S-PGVPVVLVGTKLDLREDKHYLADHPG   76 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~---~-~~~piilv~nK~D~~~~~~~~~~~~~   76 (150)
                      |||+|+++     ..|++++|++|+|||++++.+++.+ ..|+..+...   . ++.|+++|+||+|+.....       
T Consensus        59 ~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~-------  125 (178)
T 2iwr_A           59 REEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASSP-------  125 (178)
T ss_dssp             EECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBC-------
T ss_pred             EECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECcccccccc-------
Confidence            89999997     4678899999999999999999998 7865555433   2 4799999999999853211       


Q ss_pred             CCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           77 LVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                       ..+..+++..+++..+..+++++||++|.|++++|+.+++.+...
T Consensus       126 -~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~  170 (178)
T 2iwr_A          126 -RVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTL  170 (178)
T ss_dssp             -CCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             -CcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHH
Confidence             225778888898887434999999999999999999999988753

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.86  E-value=2.9e-21  Score=133.93  Aligned_cols=108  Identities=31%  Similarity=0.524  Sum_probs=86.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|..++..+++.+|++++|||++++.+++.+ ..|+..+....  .+.|+++|+||+|+....          
T Consensus        74 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~----------  142 (190)
T 3con_A           74 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPTRT----------  142 (190)
T ss_dssp             EECCC-----------CTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC----------
T ss_pred             EECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCccc----------
Confidence            89999999999999999999999999999999999998 88988887654  379999999999987622          


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                       +..+++..+++.+++ +++++||+++.|++++|+.+++.+.+
T Consensus       143 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~  183 (190)
T 3con_A          143 -VDTKQAHELAKSYGI-PFIETSAKTRQGVEDAFYTLVREIRQ  183 (190)
T ss_dssp             -SCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence             367888899999997 99999999999999999999998864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.86  E-value=3e-21  Score=136.00  Aligned_cols=108  Identities=30%  Similarity=0.557  Sum_probs=96.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+....+ +.|+++|+||+|+... .          
T Consensus        74 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~----------  141 (213)
T 3cph_A           74 WDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETR-V----------  141 (213)
T ss_dssp             ECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHTTTCSEEEEEEECTTCSSC-C----------
T ss_pred             EeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccc-c----------
Confidence            89999999999999999999999999999999999998 899988887664 7999999999999432 2          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +...++..+++.+++ +++++||+++.|++++|+.|.+.+.+
T Consensus       142 ~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~  182 (213)
T 3cph_A          142 VTADQGEALAKELGI-PFIESSAKNDDNVNEIFFTLAKLIQE  182 (213)
T ss_dssp             SCHHHHHHHHHHHTC-CEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            367788889999997 99999999999999999999988764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.86  E-value=2.6e-21  Score=130.48  Aligned_cols=108  Identities=30%  Similarity=0.549  Sum_probs=96.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC--CCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++.+|++++|||++++.+++.+ ..|+..+....+  +.|+++|+||+|+....          
T Consensus        56 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~----------  124 (166)
T 2ce2_X           56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAART----------  124 (166)
T ss_dssp             EECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC----------
T ss_pred             EECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhhcc----------
Confidence            89999999999999999999999999999999999998 889888877653  79999999999987632          


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                       +...+...+++.+++ +++++||+++.|++++|+.+++.+.+
T Consensus       125 -~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~  165 (166)
T 2ce2_X          125 -VESRQAQDLARSYGI-PYIETSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             -SCHHHHHHHHHHHTC-CEEEECTTTCTTHHHHHHHHHHHHHT
T ss_pred             -cCHHHHHHHHHHcCC-eEEEecCCCCCCHHHHHHHHHHHHHh
Confidence             367888899999997 99999999999999999999988754

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.86  E-value=4.2e-21  Score=143.58  Aligned_cols=122  Identities=52%  Similarity=0.892  Sum_probs=101.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||||+++|..++..+++++|++++|||++++.+++.+...|+..+....+++|+++|+||+|+........  ......
T Consensus       208 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~  287 (332)
T 2wkq_A          208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT  287 (332)
T ss_dssp             EEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred             EeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccc
Confidence            899999999999999999999999999999999999984479999988777899999999999965321000  000012


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      .+...++..+++..++.+++++||++|.|++++|+.+++.++.+
T Consensus       288 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          288 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred             cccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhcC
Confidence            35788899999999866899999999999999999999998765

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.85  E-value=1.4e-21  Score=136.66  Aligned_cols=114  Identities=12%  Similarity=0.218  Sum_probs=90.8

Q ss_pred             CCCCCcccccccc---cccccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCC
Q 031970            1 MNVIGQEDYNRLR---PLSYRGADVFVLAFSLVSR--ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP   75 (150)
Q Consensus         1 wDt~G~e~~~~l~---~~~~~~ad~~i~v~d~~~~--~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~   75 (150)
                      |||+|+++|..+.   ..+++++|++|+|||++++  ++++.+ ..|+..+....++.|+++|+||+|+.+.....   .
T Consensus        74 ~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~---~  149 (196)
T 3llu_A           74 WDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRL-HITVSKAYKVNPDMNFEVFIHKVDGLSDDHKI---E  149 (196)
T ss_dssp             EECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHH-HHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH---H
T ss_pred             EECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeccccCchhhhh---H
Confidence            9999999998877   7999999999999999997  677776 67888776666789999999999986532100   0


Q ss_pred             CCCccCHHHHHHHHH----HcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           76 GLVPVTTAQGEELRK----QIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        76 ~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      ..+.+.......+++    ..++ +++++||++ .||+++|..+++.++
T Consensus       150 ~~~~v~~~~~~~~~~~~~~~~~~-~~~e~Sa~~-~~v~~~f~~l~~~li  196 (196)
T 3llu_A          150 TQRDIHQRANDDLADAGLEKLHL-SFYLTSIYD-HSIFEAFSKVVQKLI  196 (196)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTSCE-EEEEECTTS-THHHHHHHHHHHHTC
T ss_pred             HHhHHHHHHHHHHHHhhhhcCCc-ceEEEEech-hhHHHHHHHHHHHhC
Confidence            001235556677777    6676 899999999 999999999998763

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.85  E-value=3.5e-21  Score=135.06  Aligned_cols=106  Identities=15%  Similarity=0.177  Sum_probs=84.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..+++.+++++|++++|||++++.+++.+ ..|+..+.+..  .+.|+++|+||+|+...           
T Consensus        74 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-----------  141 (198)
T 1f6b_A           74 FDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLES-KEELDSLMTDETIANVPILILGNKIDRPEA-----------  141 (198)
T ss_dssp             EEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHH-HHHHHHHHTCGGGTTSCEEEEEECTTSTTC-----------
T ss_pred             EECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEEECCCcccc-----------
Confidence            89999999999999999999999999999999999998 78887776542  57999999999998752           


Q ss_pred             ccCHHHHHHHHHHc----------------CCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQI----------------GASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        79 ~v~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                       +..+++..++...                ...+++++||++|.|++++|+.+++.+
T Consensus       142 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          142 -ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             -CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             -CCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence             2556666665432                223799999999999999999998643

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.85  E-value=1.7e-22  Score=141.52  Aligned_cols=109  Identities=29%  Similarity=0.547  Sum_probs=87.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.....          
T Consensus        87 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------  155 (199)
T 3l0i_B           87 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------  155 (199)
T ss_dssp             ECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--CC----------
T ss_pred             EECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHH-HHHHHHHHHhccCCCCEEEEEECccCCcccc----------
Confidence            89999999999999999999999999999999999998 88999998765 3799999999999976543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +...++..+++.+++ +++++||+++.|++++|+.|++.+.+
T Consensus       156 v~~~~~~~~~~~~~~-~~~~vSA~~g~gv~~l~~~l~~~l~~  196 (199)
T 3l0i_B          156 VDYTTAKEFADSLGI-PFLETSAKNATNVEQSFMTMAAEIKK  196 (199)
T ss_dssp             CCSCC-CHHHHTTTC-CBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred             CCHHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            244566778888887 89999999999999999999887764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.85  E-value=1.6e-21  Score=132.72  Aligned_cols=108  Identities=9%  Similarity=0.082  Sum_probs=87.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+....  .+.|+++|+||+|+.+...         
T Consensus        56 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---------  125 (171)
T 1upt_A           56 WDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDMEQAMT---------  125 (171)
T ss_dssp             EEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---------
T ss_pred             EECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCCcCCCC---------
Confidence            89999999999999999999999999999999999988 67776665432  5799999999999976421         


Q ss_pred             ccCHHHHHH-----HHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           79 PVTTAQGEE-----LRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        79 ~v~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                         ..+...     .++..++ +++++||+++.|++++|+.+++.+.++
T Consensus       126 ---~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~  170 (171)
T 1upt_A          126 ---SSEMANSLGLPALKDRKW-QIFKTSATKGTGLDEAMEWLVETLKSR  170 (171)
T ss_dssp             ---HHHHHHHHTGGGCTTSCE-EEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             ---HHHHHHHhCchhccCCce-EEEECcCCCCcCHHHHHHHHHHHHhhc
Confidence               122221     2233454 899999999999999999999988654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=1.9e-21  Score=135.85  Aligned_cols=108  Identities=31%  Similarity=0.503  Sum_probs=96.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++ ..++..+++.+|++|+|||++++.+++.+ ..|+..+....  .+.|+++|+||+|+.....         
T Consensus        81 ~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~---------  149 (196)
T 2atv_A           81 LDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ---------  149 (196)
T ss_dssp             EECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC---------
T ss_pred             EECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHH-HHHHHHHHHhhCCCCCcEEEEEECcccccccc---------
Confidence            89999999 77888899999999999999999999998 88888887653  5899999999999976543         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCC-CHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQ-NVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~l~~~~~~  121 (150)
                       +..+++..+++.+++ +++++||+++. |++++|+.+++.+.+
T Consensus       150 -v~~~~~~~~~~~~~~-~~~~~Sa~~g~~gi~~l~~~l~~~i~~  191 (196)
T 2atv_A          150 -VSTEEGEKLATELAC-AFYECSACTGEGNITEIFYELCREVRR  191 (196)
T ss_dssp             -SCHHHHHHHHHHHTS-EEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred             -cCHHHHHHHHHHhCC-eEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence             477888899999997 99999999999 999999999998864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=4.6e-21  Score=132.83  Aligned_cols=110  Identities=12%  Similarity=0.112  Sum_probs=85.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+...  ..+.|+++|+||+|+....          
T Consensus        65 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----------  133 (187)
T 1zj6_A           65 WDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKECM----------  133 (187)
T ss_dssp             EECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTCC----------
T ss_pred             EECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCcCCC----------
Confidence            89999999999999999999999999999999999998 7888877765  2579999999999997532          


Q ss_pred             ccCHHHHHHHHH-----HcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970           79 PVTTAQGEELRK-----QIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  124 (150)
Q Consensus        79 ~v~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  124 (150)
                        ..+++.....     ..++ +++++||+++.|++++|+.+++.+...+.
T Consensus       134 --~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  181 (187)
T 1zj6_A          134 --TVAEISQFLKLTSIKDHQW-HIQACCALTGEGLCQGLEWMMSRLKIRLE  181 (187)
T ss_dssp             --CHHHHHHHHTGGGCCSSCE-EEEECBTTTTBTHHHHHHHHHHHHCC---
T ss_pred             --CHHHHHHHhChhhhcCCCc-EEEEccCCCCcCHHHHHHHHHHHHHHHhh
Confidence              3344433332     2344 89999999999999999999999876543

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.85  E-value=6.4e-21  Score=132.88  Aligned_cols=105  Identities=15%  Similarity=0.207  Sum_probs=87.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..+++.+++++|++|+|||++++.+++.+ ..|+..+.+..  .+.|+++|+||+|+...           
T Consensus        72 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-----------  139 (190)
T 1m2o_B           72 FDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPNA-----------  139 (190)
T ss_dssp             EECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTC-----------
T ss_pred             EECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHH-HHHHHHHHcchhhcCCCEEEEEECCCCcCC-----------
Confidence            89999999999999999999999999999999999998 78887776532  57999999999998752           


Q ss_pred             ccCHHHHHHHHHHc-----------CCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQI-----------GASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        79 ~v~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                       +..+++.+.+...           ...+++++||++|.|++++|+.+++.
T Consensus       140 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          140 -VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             -CCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             -CCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence             2455555554321           22379999999999999999998764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.84  E-value=7.3e-22  Score=133.68  Aligned_cols=107  Identities=10%  Similarity=0.106  Sum_probs=85.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++++|++++|||++++.+++.+ ..|+..+...  .++.|+++|+||+|+.+..          
T Consensus        49 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----------  117 (164)
T 1r8s_A           49 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAM----------  117 (164)
T ss_dssp             EECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC----------
T ss_pred             EEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHhchhhcCCeEEEEEECcCCcCCC----------
Confidence            89999999999999999999999999999999999998 7787776553  2579999999999996542          


Q ss_pred             ccCHHHHHHH-----HHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEEL-----RKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                        ...+....     ++..++ +++++||+++.|++++|+.+++.+..
T Consensus       118 --~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          118 --NAAEITDKLGLHSLRHRNW-YIQATCATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             --CHHHHHHHTTGGGCSSCCE-EEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             --CHHHHHHHhCcccccCccE-EEEEcccCCCcCHHHHHHHHHHHHhh
Confidence              22222211     112333 79999999999999999999988753

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.84  E-value=1.1e-20  Score=130.53  Aligned_cols=108  Identities=14%  Similarity=0.145  Sum_probs=88.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++++|++++|||++++.+++.+ ..|+..+.+.  ..+.|+++|+||+|+.+..          
T Consensus        67 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----------  135 (186)
T 1ksh_A           67 WDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDC-QRELQSLLVEERLAGATLLIFANKQDLPGAL----------  135 (186)
T ss_dssp             EEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC----------
T ss_pred             EECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHhChhcCCCcEEEEEeCccCCCCC----------
Confidence            89999999999999999999999999999999999998 7777776654  2579999999999997642          


Q ss_pred             ccCHHHHHHHHH-----HcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           79 PVTTAQGEELRK-----QIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        79 ~v~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                        ..++......     ..++ +++++||+++.|++++|+.+.+.+.+.
T Consensus       136 --~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          136 --SCNAIQEALELDSIRSHHW-RIQGCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             --CHHHHHHHTTGGGCCSSCE-EEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             --CHHHHHHHhChhhccCCce-EEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence              2233332221     2344 899999999999999999999988654

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.84  E-value=2e-20  Score=129.92  Aligned_cols=107  Identities=15%  Similarity=0.209  Sum_probs=88.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccccccccCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPG   76 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~D~~~~~~~~~~~~~   76 (150)
                      |||+|+++|..++..+++++|++|+|||++++.+++.+ ..|+..+....    .+.|+++|+||+|+....        
T Consensus        72 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--------  142 (190)
T 2h57_A           72 FDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRDAV--------  142 (190)
T ss_dssp             EEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC--------
T ss_pred             EECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcccCC--------
Confidence            89999999999999999999999999999999999998 77877776543    479999999999997532        


Q ss_pred             CCccCHHHHHHHHH-----HcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           77 LVPVTTAQGEELRK-----QIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        77 ~~~v~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                          ..+++.....     ..++ +++++||+++.|++++|+.|.+.+.+
T Consensus       143 ----~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          143 ----TSVKVSQLLCLENIKDKPW-HICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             ----CHHHHHHHHTGGGCCSSCE-EEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             ----CHHHHHHHhChhhccCCce-EEEEccCCCCcCHHHHHHHHHHHHHH
Confidence                3455555543     1244 89999999999999999999987743

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.84  E-value=5.8e-21  Score=132.06  Aligned_cols=107  Identities=19%  Similarity=0.208  Sum_probs=85.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++++|++++|||++++.+++.+ ..|+..+...  ..+.|+++|+||+|+.+..          
T Consensus        65 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----------  133 (181)
T 1fzq_A           65 WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAA----------  133 (181)
T ss_dssp             EECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCC----------
T ss_pred             EECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcCcccCC----------
Confidence            89999999999999999999999999999999999998 7787776543  2579999999999987642          


Q ss_pred             ccCHHHHHHHH-----HHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELR-----KQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                        ..++.....     ...++ +++++||++|.|++++|+.+++.+.+
T Consensus       134 --~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          134 --PASEIAEGLNLHTIRDRVW-QIQSCSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             --CHHHHHHHTTGGGCCSSCE-EEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred             --CHHHHHHHhCchhccCCce-EEEEccCCCCCCHHHHHHHHHHHHHh
Confidence              222222221     12233 79999999999999999999987754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.83  E-value=1.2e-20  Score=130.24  Aligned_cols=104  Identities=13%  Similarity=0.131  Sum_probs=84.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|..++..+++++|++|+|||++++.+++.+ ..|+..+.+.  ..+.|+++|+||+|+....          
T Consensus        70 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----------  138 (181)
T 2h17_A           70 WDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKECM----------  138 (181)
T ss_dssp             EEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC----------
T ss_pred             EECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCCcccCC----------
Confidence            89999999999999999999999999999999999998 7777776654  2579999999999987532          


Q ss_pred             ccCHHHHHHHH-----HHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           79 PVTTAQGEELR-----KQIGASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        79 ~v~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                        ...++....     ...++ +++++||+++.|++++|+.|++.
T Consensus       139 --~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          139 --TVAEISQFLKLTSIKDHQW-HIQACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             --CHHHHHHHTTGGGCCSSCE-EEEECBTTTTBTHHHHHHHHHTC
T ss_pred             --CHHHHHHHhCcccccCCce-EEEEccCCCCcCHHHHHHHHHhh
Confidence              333333332     22343 89999999999999999998754

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.73  E-value=2.3e-22  Score=141.34  Aligned_cols=119  Identities=55%  Similarity=0.922  Sum_probs=96.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+...|+..+....++.|+++|+||+|+........  ......
T Consensus        83 ~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~  162 (204)
T 3th5_A           83 WDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT  162 (204)
Confidence            999999999999999999999999999999999999973389888887767899999999999976431100  000011


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      .+..+++..+++..+..+++++||++|.|++++|+.+++.+
T Consensus       163 ~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          163 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            24567777888888865899999999999999999998765

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.83  E-value=2.8e-21  Score=134.94  Aligned_cols=107  Identities=9%  Similarity=0.096  Sum_probs=81.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..+++.+++++|++|+|||++++.+++.+ ..|+..+....  ++.|+++|+||+|+.+..          
T Consensus        78 ~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~----------  146 (192)
T 2b6h_A           78 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQES-ADELQKMLQEDELRDAVLLVFANKQDMPNAM----------  146 (192)
T ss_dssp             EECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC----------
T ss_pred             EECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHhcccccCCCeEEEEEECCCCCCCC----------
Confidence            89999999999999999999999999999999999998 78877776532  479999999999986542          


Q ss_pred             ccCHHHHHHH-----HHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEEL-----RKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                        ...++...     +...++ +++++||+++.|++++|+.|++.+.+
T Consensus       147 --~~~~i~~~~~~~~~~~~~~-~~~~~SA~~g~gi~~l~~~l~~~i~~  191 (192)
T 2b6h_A          147 --PVSELTDKLGLQHLRSRTW-YVQATCATQGTGLYDGLDWLSHELSK  191 (192)
T ss_dssp             --CHHHHHHHTTGGGCSSCCE-EEEECBTTTTBTHHHHHHHHHHHTTT
T ss_pred             --CHHHHHHHhCcccccCCce-EEEECcCCCcCCHHHHHHHHHHHHhc
Confidence              22222211     112233 79999999999999999999988753

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.83  E-value=2.3e-21  Score=134.36  Aligned_cols=115  Identities=18%  Similarity=0.345  Sum_probs=92.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..+++.++++++++++|||++++ .+++.+ ..|+..+....++.|+++|+||+|+.+....       ..
T Consensus        61 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-------~~  132 (184)
T 2zej_A           61 WDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDEKQR-------KA  132 (184)
T ss_dssp             EEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCHHHH-------HH
T ss_pred             EecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccchhh-------HH
Confidence            99999999999999999999999999999997 578887 8999988876678999999999998754321       00


Q ss_pred             cCHHHHHHHHHHcCCc---EEEEeccCCCC-CHHHHHHHHHHHHhCCC
Q 031970           80 VTTAQGEELRKQIGAS---YYIECSSKTQQ-NVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~---~~~~~Sa~~~~-~i~~~~~~l~~~~~~~~  123 (150)
                      +.......+++.+++.   +++++||+++. +++++++.+.+.+...+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          133 CMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFK  180 (184)
T ss_dssp             HHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhccc
Confidence            0123445666667763   39999999996 99999999999887643

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.83  E-value=6.1e-21  Score=132.33  Aligned_cols=108  Identities=15%  Similarity=0.104  Sum_probs=87.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..+++.+++++|++|+|||++++.+++.+ ..|+..+....  ++.|+++|+||+|+.+..          
T Consensus        71 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----------  139 (189)
T 2x77_A           71 WDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQDLPDAA----------  139 (189)
T ss_dssp             EEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTTSTTCC----------
T ss_pred             EECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCCCcCCC----------
Confidence            89999999999999999999999999999999999988 67776665432  479999999999997642          


Q ss_pred             ccCHHHHHH-----HHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           79 PVTTAQGEE-----LRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        79 ~v~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                        ...+...     .+...++ +++++||+++.|++++|+.+.+.+.+.
T Consensus       140 --~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          140 --SEAEIAEQLGVSSIMNRTW-TIVKSSSKTGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             --CHHHHHHHTTGGGCCSSCE-EEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred             --CHHHHHHHhChhhccCCce-EEEEccCCCccCHHHHHHHHHHHHHhc
Confidence              1122221     1222344 799999999999999999999988643

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.83  E-value=1.4e-21  Score=146.52  Aligned_cols=118  Identities=14%  Similarity=0.173  Sum_probs=87.3

Q ss_pred             CCCCCcccccc---cccccccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCC
Q 031970            1 MNVIGQEDYNR---LRPLSYRGADVFVLAFSLVSR--ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP   75 (150)
Q Consensus         1 wDt~G~e~~~~---l~~~~~~~ad~~i~v~d~~~~--~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~   75 (150)
                      |||||||+|..   +++.||++|+++|+|||++++  .+.+.. ..|+..+.+..+++|++++|||+|+.+...-   ..
T Consensus        51 WDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~~~~R---~~  126 (331)
T 3r7w_B           51 MELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNL-AMIIEYAYKVNPSINIEVLIHKVDGLSEDFK---VD  126 (331)
T ss_dssp             EECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHH-HHHHHHHHHHCTTCEEEEECCCCCSSCSHHH---HH
T ss_pred             EECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHH-HHHHHHHhhcCCCCcEEEEEECcccCchhhh---hh
Confidence            99999999964   468899999999999999998  233332 3345555555678999999999999764210   00


Q ss_pred             CCCccCHHHHHHHHHH----cCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970           76 GLVPVTTAQGEELRKQ----IGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  124 (150)
Q Consensus        76 ~~~~v~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  124 (150)
                      ..+.|..+++..+++.    .++ +|+++||++ .+|.++|..+++.++...+
T Consensus       127 ~~R~V~~~~~~~la~~~~~~~~i-~f~eTSAkd-~nV~eAFs~iv~~li~~~~  177 (331)
T 3r7w_B          127 AQRDIMQRTGEELLELGLDGVQV-SFYLTSIFD-HSIYEAFSRIVQKLIPELS  177 (331)
T ss_dssp             HHHHHHHHHHHTTSSSSCSCCCE-EEECCCSSS-SHHHHHHHHHHTTSSTTHH
T ss_pred             HHHHhhHHHHHHHHhhcccccCc-eEEEeccCC-CcHHHHHHHHHHHHHhhHH
Confidence            0011355666677775    565 899999998 6999999999998876543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.82  E-value=3.1e-20  Score=128.94  Aligned_cols=107  Identities=19%  Similarity=0.222  Sum_probs=85.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++++|++|+|||++++.+++.+ ..|+..+...  ..+.|+++|+||+|+....          
T Consensus        72 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----------  140 (188)
T 1zd9_A           72 WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPGAL----------  140 (188)
T ss_dssp             EEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTCC----------
T ss_pred             EECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHH-HHHHHHHHhCcccCCCCEEEEEECCCCccCC----------
Confidence            89999999999999999999999999999999999998 7777776543  2579999999999987542          


Q ss_pred             ccCHHHHHHHH-----HHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELR-----KQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                        ...+.....     ...++ +++++||+++.|++++|+.|++.+..
T Consensus       141 --~~~~~~~~~~~~~~~~~~~-~~~~~SA~~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          141 --DEKELIEKMNLSAIQDREI-CCYSISCKEKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             --CHHHHHHHTTGGGCCSSCE-EEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred             --CHHHHHHHhChhhhccCCe-eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence              222222111     12233 78999999999999999999987754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.82  E-value=6.5e-20  Score=126.18  Aligned_cols=107  Identities=9%  Similarity=0.088  Sum_probs=84.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++++|++++|||++++.+++.+ ..|+..+....  .+.|+++|+||+|+....          
T Consensus        67 ~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----------  135 (183)
T 1moz_A           67 WDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGAL----------  135 (183)
T ss_dssp             EEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTCC----------
T ss_pred             EECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHH-HHHHHHHHcChhhCCCeEEEEEECCCCCCCC----------
Confidence            89999999999999999999999999999999999998 78887777653  579999999999987532          


Q ss_pred             ccCHHHHHHHHHH-----cCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQ-----IGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                        ...++......     .++ +++++||+++.|++++|+.+.+.+.+
T Consensus       136 --~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~  180 (183)
T 1moz_A          136 --SASEVSKELNLVELKDRSW-SIVASSAIKGEGITEGLDWLIDVIKE  180 (183)
T ss_dssp             --CHHHHHHHTTTTTCCSSCE-EEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHhCcccccCCce-EEEEccCCCCcCHHHHHHHHHHHHHh
Confidence              33333333221     233 79999999999999999999998753

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.79  E-value=6.6e-20  Score=139.28  Aligned_cols=119  Identities=20%  Similarity=0.194  Sum_probs=93.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDK   68 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~   68 (150)
                      |||+||++|+.+|..||++++++|+|||+++          ..++++. ..|+..+...  ..++|+||++||+|+....
T Consensus       198 wDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~~~~~~~~~piiLv~NK~DL~~~k  276 (353)
T 1cip_A          198 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSICNNKWFTDTSIILFLNKKDLFEEK  276 (353)
T ss_dssp             EEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECHHHHHHH
T ss_pred             EeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHHcCccccCCcEEEEEECcCchhhh
Confidence            9999999999999999999999999999999          5678887 6777777653  2589999999999996433


Q ss_pred             cc---ccCCCC--CCccCHHHHHHHHHH-----------cCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           69 HY---LADHPG--LVPVTTAQGEELRKQ-----------IGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        69 ~~---~~~~~~--~~~v~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      ..   .....+  ...+..+++..++..           .++ .++++||+++.||.++|+.+.+.+..
T Consensus       277 i~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~etSA~~~~nV~~vF~~v~~~i~~  344 (353)
T 1cip_A          277 IKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEI-YTHFTCATDTKNVQFVFDAVTDVIIK  344 (353)
T ss_dssp             HTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCE-EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEECcCchhHHHHHHHHHHHHHH
Confidence            10   000000  012467788888762           444 88999999999999999999998874

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.79  E-value=4.1e-20  Score=139.32  Aligned_cols=108  Identities=10%  Similarity=0.112  Sum_probs=80.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|..++..+++.+|++|+|||++++.+++.+ ..|+..+....  +++|+++|+||+|+.+..          
T Consensus       214 ~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~----------  282 (329)
T 3o47_A          214 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAM----------  282 (329)
T ss_dssp             EECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC----------
T ss_pred             EECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHH-HHHHHHHHhhhccCCCeEEEEEECccCCccc----------
Confidence            89999999999999999999999999999999999998 55555544332  589999999999987643          


Q ss_pred             ccCHHHHHHHH-----HHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           79 PVTTAQGEELR-----KQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        79 ~v~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                        ...++....     +..++ +++++||+++.||+++|+.|++.+.+.
T Consensus       283 --~~~~i~~~~~~~~~~~~~~-~~~~vSAk~g~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          283 --NAAEITDKLGLHSLRHRNW-YIQATCATSGDGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             --CHHHHHHHHTCTTCCSSCE-EEEECBTTTTBTHHHHHHHHHHHHTC-
T ss_pred             --CHHHHHHHhchhhhhcCCC-EEEEEECCCCcCHHHHHHHHHHHHHhc
Confidence              222222211     11233 799999999999999999999988754

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.78  E-value=4.5e-19  Score=129.16  Aligned_cols=104  Identities=17%  Similarity=0.256  Sum_probs=87.2

Q ss_pred             CCCccccccccccccc---------------------CCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhh--CCCCCEEE
Q 031970            3 VIGQEDYNRLRPLSYR---------------------GADVFVLAFSLVSR--ASYENVLKKWIPELQHY--SPGVPVVL   57 (150)
Q Consensus         3 t~G~e~~~~l~~~~~~---------------------~ad~~i~v~d~~~~--~s~~~~~~~~~~~i~~~--~~~~piil   57 (150)
                      ++|+++|..++..+++                     +||++|+|||++++  .+++.+ ..|+..+.+.  ..++|+++
T Consensus       125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~-~~~l~~i~~~~~~~~~piil  203 (255)
T 3c5h_A          125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQ-LKFVSNLYNQLAKTKKPIVV  203 (255)
T ss_dssp             HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHH-HHHHHHHHHHHHHTTCCEEE
T ss_pred             cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHH-HHHHHHHHHHhccCCCCEEE
Confidence            8899999999999998                     79999999999998  999998 8998888765  25799999


Q ss_pred             EeeCCCcccccccccCCCCCCccCHHHHHHHHHHc-CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           58 VGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-GASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        58 v~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      |+||+|+.....            .+++..+++.. ++ +++++||+++.|++++|+.|++.+.
T Consensus       204 V~NK~Dl~~~~~------------v~~~~~~~~~~~~~-~~~e~SAk~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          204 VLTKCDEGVERY------------IRDAHTFALSKKNL-QVVETSARSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             EEECGGGBCHHH------------HHHHHHHHHTSSSC-CEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEcccccccHH------------HHHHHHHHHhcCCC-eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            999999865432            25667777764 65 8999999999999999999998763

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.78  E-value=2.1e-19  Score=136.53  Aligned_cols=120  Identities=14%  Similarity=0.086  Sum_probs=90.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDK   68 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~----------~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~   68 (150)
                      |||+||++|+.+|..||++++++|+|||++          +..++++. ..|+..+...  .+++|++||+||+|+....
T Consensus       188 wDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k  266 (354)
T 2xtz_A          188 FDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNKFDIFEKK  266 (354)
T ss_dssp             EEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEECHHHHHHH
T ss_pred             EECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHHhccccCCCeEEEEEECcchhhhh
Confidence            999999999999999999999999999998          78899998 7777777654  2689999999999986543


Q ss_pred             ccc---cC-----CC---CCCccCHHHHHHHHHH---------------cCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           69 HYL---AD-----HP---GLVPVTTAQGEELRKQ---------------IGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        69 ~~~---~~-----~~---~~~~v~~~~~~~~~~~---------------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      ...   ..     ..   .......+++..++..               .....++++||+++.||.++|+.+.+.+..
T Consensus       267 ~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~  345 (354)
T 2xtz_A          267 VLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRR  345 (354)
T ss_dssp             TTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHH
Confidence            210   00     00   0011124566666433               122256899999999999999999998863

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.78  E-value=4e-19  Score=132.69  Aligned_cols=117  Identities=15%  Similarity=0.236  Sum_probs=93.3

Q ss_pred             CCCCCcccc-----cccccccccCCcEEEEEEeCCChhhHHHHHHHH---HHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQEDY-----NRLRPLSYRGADVFVLAFSLVSRASYENVLKKW---IPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~~-----~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~---~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||+++|     ..+++.+++++|++|+|||++++.+++++ ..|   +..+....+++|+++|+||+|+.+..... 
T Consensus        57 ~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~-  134 (307)
T 3r7w_A           57 WDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKRE-  134 (307)
T ss_dssp             EEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH-
T ss_pred             EECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccchhhhh-
Confidence            999999999     78889999999999999999999999987 666   44455556789999999999997621100 


Q ss_pred             CCCCCCccCHHHHHHHHHHcCC--cEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           73 DHPGLVPVTTAQGEELRKQIGA--SYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                         ....+...++..+++.+|.  .+++++||++ .++.++|..+++.++...
T Consensus       135 ---~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li~~~  183 (307)
T 3r7w_A          135 ---ELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLIPNM  183 (307)
T ss_dssp             ---HHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTCSCH
T ss_pred             ---HHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHcCCH
Confidence               0000255788899999873  4999999999 899999999998876543

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.77  E-value=7.2e-19  Score=124.11  Aligned_cols=109  Identities=16%  Similarity=0.145  Sum_probs=77.0

Q ss_pred             CCCCCcccccc-cccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhh---CCCCCEEEEeeCCCcccccccccCCC
Q 031970            1 MNVIGQEDYNR-LRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHY---SPGVPVVLVGTKLDLREDKHYLADHP   75 (150)
Q Consensus         1 wDt~G~e~~~~-l~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~~i~~~---~~~~piilv~nK~D~~~~~~~~~~~~   75 (150)
                      |||||+++|.. +++.|++++|++|+|||+++.. ++......|...+...   ..+.|+++|+||+|+......     
T Consensus        59 ~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-----  133 (214)
T 2fh5_B           59 IDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA-----  133 (214)
T ss_dssp             EECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH-----
T ss_pred             EECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccH-----
Confidence            89999999998 8889999999999999999954 4655545565555432   247999999999999765321     


Q ss_pred             CCCccCHHHHHHHHH--------------------------------Hc---CCcEEEEeccCCC------CCHHHHHHH
Q 031970           76 GLVPVTTAQGEELRK--------------------------------QI---GASYYIECSSKTQ------QNVKAVFDA  114 (150)
Q Consensus        76 ~~~~v~~~~~~~~~~--------------------------------~~---~~~~~~~~Sa~~~------~~i~~~~~~  114 (150)
                         ....+.+.....                                ..   + .+|+++||++|      .||+++|+.
T Consensus       134 ---~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~SAk~g~~~~~~~gv~~lf~~  209 (214)
T 2fh5_B          134 ---KLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLK-VEFLECSAKGGRGDTGSADIQDLEKW  209 (214)
T ss_dssp             ---HHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSC-EEEEECBCC-------CCBCHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCc-EEEEEeeccCCCccccccChHHHHHH
Confidence               001111111111                                11   3 38999999999      999999999


Q ss_pred             HHHH
Q 031970          115 AIKV  118 (150)
Q Consensus       115 l~~~  118 (150)
                      |.+.
T Consensus       210 l~~~  213 (214)
T 2fh5_B          210 LAKI  213 (214)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9875

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.77  E-value=3.6e-18  Score=116.80  Aligned_cols=105  Identities=15%  Similarity=0.243  Sum_probs=77.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|..++..+++.+|++|+|||++++...+..  .++..+..  .++|+++|+||+|+...             
T Consensus        60 ~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~--~~l~~~~~--~~~p~ilv~nK~Dl~~~-------------  122 (178)
T 2lkc_A           60 LDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTV--EAINHAKA--ANVPIIVAINKMDKPEA-------------  122 (178)
T ss_dssp             SCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHH--HHHHHHGG--GSCCEEEEEETTTSSCS-------------
T ss_pred             EECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHh--CCCCEEEEEECccCCcC-------------
Confidence            99999999999999999999999999999984333322  22223332  37899999999998753             


Q ss_pred             CHHHHHHHHHHcCC--------cEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           81 TTAQGEELRKQIGA--------SYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        81 ~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ............+.        .+++++||+++.|++++|+.|++.+...
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          123 NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEME  172 (178)
T ss_dssp             CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence            22222222222221        3899999999999999999999887643

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.77  E-value=8.2e-19  Score=135.01  Aligned_cols=120  Identities=14%  Similarity=0.143  Sum_probs=90.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDK   68 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~   68 (150)
                      |||+||++|+.+|..||++++++|+|||+++          ..++++. ..|+..+...  .+++|++||+||+|+....
T Consensus       222 wDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~-~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k  300 (402)
T 1azs_C          222 FDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LNLFKSIWNNRWLRTISVILFLNKQDLLAEK  300 (402)
T ss_dssp             EEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH-HHHHHHHHTCTTCSSCCEEEEEECHHHHHHH
T ss_pred             cccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH-HHHHHHHHhcccCCCCeEEEEEEChhhhhhh
Confidence            9999999999999999999999999999999          8999998 7888888764  3689999999999986543


Q ss_pred             c---c--ccCCC---------------CCCccCHHHHHHHH-----HH--------cCCcEEEEeccCCCCCHHHHHHHH
Q 031970           69 H---Y--LADHP---------------GLVPVTTAQGEELR-----KQ--------IGASYYIECSSKTQQNVKAVFDAA  115 (150)
Q Consensus        69 ~---~--~~~~~---------------~~~~v~~~~~~~~~-----~~--------~~~~~~~~~Sa~~~~~i~~~~~~l  115 (150)
                      .   .  .....               +...-..+++..++     +.        .++ .++++||+++.||.++|..+
T Consensus       301 i~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~-~~~~TSA~d~~nV~~vF~~v  379 (402)
T 1azs_C          301 VLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC-YPHFTCAVDTENIRRVFNDC  379 (402)
T ss_dssp             HHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE-EEEECCTTCHHHHHHHHHHH
T ss_pred             hcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc-EEEEEEeecCcCHHHHHHHH
Confidence            2   1  00000               00000134444442     22        133 67899999999999999999


Q ss_pred             HHHHhCC
Q 031970          116 IKVVIKP  122 (150)
Q Consensus       116 ~~~~~~~  122 (150)
                      ...+...
T Consensus       380 ~~~I~~~  386 (402)
T 1azs_C          380 RDIIQRM  386 (402)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888643

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.76  E-value=9.4e-18  Score=117.39  Aligned_cols=109  Identities=29%  Similarity=0.542  Sum_probs=95.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..++..++++++++++|||+++..+++.+ ..|+..+.... .+.|+++|+||+|+.+...          
T Consensus        59 ~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------  127 (199)
T 2f9l_A           59 WDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------  127 (199)
T ss_dssp             EECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------
T ss_pred             EECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccC----------
Confidence            89999999999999999999999999999999999987 78888776654 4789999999999976543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +...++..++...++ .++++||+++.|++++|+.+.+.+..
T Consensus       128 ~~~~~a~~l~~~~~~-~~~d~Sal~~~~i~~l~~~l~~~~~~  168 (199)
T 2f9l_A          128 VPTDEARAFAEKNNL-SFIETSALDSTNVEEAFKNILTEIYR  168 (199)
T ss_dssp             SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            366778889999997 89999999999999999999988864

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.76  E-value=8.3e-19  Score=133.63  Aligned_cols=119  Identities=15%  Similarity=0.142  Sum_probs=84.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDK   68 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~   68 (150)
                      |||+||++|+.+|..||++++++|+|||+++          ..++++. ..|+..+...  ..++|+||++||+|+....
T Consensus       206 ~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es-~~~~~~i~~~~~~~~~piILv~NK~DL~~~k  284 (362)
T 1zcb_A          206 VDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES-LNIFETIVNNRVFSNVSIILFLNKTDLLEEK  284 (362)
T ss_dssp             EEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECHHHHHHH
T ss_pred             EeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHH-HHHHHHHhcchhhCCCCEEEEEEChhhhhhh
Confidence            9999999999999999999999999999999          7899988 6777776653  3689999999999997543


Q ss_pred             cc---ccC---CCCCCccCHHHHHHHHH-----------HcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           69 HY---LAD---HPGLVPVTTAQGEELRK-----------QIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        69 ~~---~~~---~~~~~~v~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      ..   ...   +.....+..+++..++.           ..++ .++++||+++.||.++|+.+.+.+..
T Consensus       285 i~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~~tSA~d~~nV~~vF~~v~~~i~~  353 (362)
T 1zcb_A          285 VQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPL-YHHFTTAINTENIRLVFRDVKDTILH  353 (362)
T ss_dssp             TTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CC-EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEecCCchhHHHHHHHHHHHHHH
Confidence            10   000   00111246677776652           2344 78999999999999999999998864

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.76  E-value=2e-18  Score=128.58  Aligned_cols=99  Identities=18%  Similarity=0.168  Sum_probs=84.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||  |++|+.+++.|++++|++|+|||++++. +++.+ +.|+..+..  .++|+++|+||+|+.+...          
T Consensus        68 wD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~~~l~~~~~--~~~piilv~NK~DL~~~~~----------  132 (301)
T 1u0l_A           68 ENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-DKFLVLAEK--NELETVMVINKMDLYDEDD----------  132 (301)
T ss_dssp             EEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-HHHHHHHHH--TTCEEEEEECCGGGCCHHH----------
T ss_pred             EEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEeHHHcCCchh----------
Confidence            899  9999999999999999999999999997 68776 899987765  4799999999999975421          


Q ss_pred             cCHHHHHHHHHHcC--CcEEEEeccCCCCCHHHHHHHHHH
Q 031970           80 VTTAQGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        80 v~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                        .+++..+++.++  . +++++||+++.|++++|..+..
T Consensus       133 --v~~~~~~~~~~~~~~-~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          133 --LRKVRELEEIYSGLY-PIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             --HHHHHHHHHHHTTTS-CEEECCTTTCTTHHHHHHHHSS
T ss_pred             --HHHHHHHHHHHhhhC-cEEEEECCCCcCHHHHHHHhcC
Confidence              145667777776  6 8999999999999999987754

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.75  E-value=6.5e-19  Score=132.39  Aligned_cols=120  Identities=18%  Similarity=0.177  Sum_probs=92.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDK   68 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~----------~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~   68 (150)
                      |||+||++|+.+|.+||++++++|+|||++          +..++++. ..|+..+....  .++|++|++||+|+....
T Consensus       172 wDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es-~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~k  250 (327)
T 3ohm_A          172 VDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNKKDLLEEK  250 (327)
T ss_dssp             EEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHH-HHHHHHHHTSGGGTTCEEEEEEECHHHHHHH
T ss_pred             EEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHH-HHHHHHHhhhhccCCceEEEEEECchhhhhh
Confidence            999999999999999999999999999654          67788887 56666665432  579999999999997644


Q ss_pred             cc------ccCCCCCCccCHHHHHHHHH----------HcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           69 HY------LADHPGLVPVTTAQGEELRK----------QIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        69 ~~------~~~~~~~~~v~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ..      +-.+.....+..+++..+..          ..++ .+.++||+++.||..+|..+.+.++..
T Consensus       251 i~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~~nV~~vF~~v~~~Il~~  319 (327)
T 3ohm_A          251 IMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDTENIRFVFAAVKDTILQL  319 (327)
T ss_dssp             TTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             hccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence            21      00122223457777777743          3444 788999999999999999999999864

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.75  E-value=1e-18  Score=118.92  Aligned_cols=101  Identities=15%  Similarity=0.136  Sum_probs=79.4

Q ss_pred             CCCCCcccccc------ccccccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQEDYNR------LRPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~~~~------l~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||+++|..      +.+.|++  ++|++++|+|+++....    ..|+..+.+.  +.|+++|+||+|+......  
T Consensus        55 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~----~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~--  126 (165)
T 2wji_A           55 VDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALERN----LYLTLQLMEM--GANLLLALNKMDLAKSLGI--  126 (165)
T ss_dssp             EECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHHH----HHHHHHHHHT--TCCEEEEEECHHHHHHTTC--
T ss_pred             EECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhHh----HHHHHHHHhc--CCCEEEEEEchHhccccCh--
Confidence            89999999863      4466775  89999999999986533    3566666553  7999999999998754321  


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                              . .+...+++.+++ +++++||++|.|++++|+.+++.+
T Consensus       127 --------~-~~~~~~~~~~~~-~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          127 --------E-IDVDKLEKILGV-KVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             --------C-CCHHHHHHHHTS-CEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             --------h-hHHHHHHHHhCC-CEEEEEcCCCCCHHHHHHHHHHHh
Confidence                    2 235677788887 999999999999999999998875

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.74  E-value=3.8e-18  Score=121.91  Aligned_cols=111  Identities=8%  Similarity=0.050  Sum_probs=82.6

Q ss_pred             CCCCCc------cc----ccccccccccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCEEEEeeCCCcccccc
Q 031970            1 MNVIGQ------ED----YNRLRPLSYRGADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLREDKH   69 (150)
Q Consensus         1 wDt~G~------e~----~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~-~~~~~~~i~~~~~~~piilv~nK~D~~~~~~   69 (150)
                      |||||+      ++    +..+ ..++..+|++|+|||++++.+++.. ...|+..+....++.|+++|+||+|+.....
T Consensus        81 ~DtpG~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~  159 (228)
T 2qu8_A           81 IDTPGLLDRAFENRNTIEMTTI-TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDS  159 (228)
T ss_dssp             EECTTTTTSCGGGCCHHHHHHH-HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--C
T ss_pred             EECCCCcCcccchhhhHHHHHH-HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchh
Confidence            899999      44    3333 2357889999999999998876421 1367777766556899999999999976433


Q ss_pred             cccCCCCCCccCH---HHHHHHHHHcC--CcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           70 YLADHPGLVPVTT---AQGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        70 ~~~~~~~~~~v~~---~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                                +..   .....++...+  + +++++||++|.||+++|+.|++.+....
T Consensus       160 ----------~~~~~~~~~~~~~~~~~~~~-~~~~~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          160 ----------LSIDNKLLIKQILDNVKNPI-KFSSFSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             ----------CCHHHHHHHHHHHHHCCSCE-EEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             ----------hHHHHHHHHHHHHHhcCCCc-eEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence                      133   35566777665  5 8999999999999999999999887543

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.73  E-value=3.7e-17  Score=113.87  Aligned_cols=107  Identities=30%  Similarity=0.547  Sum_probs=94.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..++..+++.++++++|||.++..+++.+ ..|+..+.... .+.|+++++||+|+.+...          
T Consensus        83 ~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------  151 (191)
T 1oix_A           83 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------  151 (191)
T ss_dssp             EEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------
T ss_pred             EECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------
Confidence            89999999999999999999999999999999999887 78888776543 4789999999999976433          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      +....+..++...++ .++++||+++.+++++|+.+.+.+
T Consensus       152 ~~~~~a~~l~~~~~~-~~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          152 VPTDEARAFAEKNGL-SFIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHh
Confidence            367788899999997 899999999999999999998865

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.72  E-value=7.2e-18  Score=134.29  Aligned_cols=108  Identities=19%  Similarity=0.292  Sum_probs=89.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||++.|..++..+++.+|++|+|||+++.+   .. ..|+..+....++.|+++|+||+|+.....          +
T Consensus       103 ~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~~---~~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~----------v  168 (535)
T 3dpu_A          103 WDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDS---NK-HYWLRHIEKYGGKSPVIVVMNKIDENPSYN----------I  168 (535)
T ss_dssp             ECCCSCCTTTTTCHHHHHSSEEEEEEECGGGGG---GH-HHHHHHHHHHSSSCCEEEEECCTTTCTTCC----------C
T ss_pred             EECCcHHHHHHHHHHHccCCcEEEEEEeCCCch---hH-HHHHHHHHHhCCCCCEEEEEECCCcccccc----------c
Confidence            899999999999999999999999999998763   44 678888888877899999999999976543          3


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      ..+.+...+...++ +++++||++|.||+++++.+.+.+.+.+
T Consensus       169 ~~~~~~~~~~~~~~-~~~~vSA~~g~gi~eL~~~l~~~~~~~~  210 (535)
T 3dpu_A          169 EQKKINERFPAIEN-RFHRISCKNGDGVESIAKSLKSAVLHPD  210 (535)
T ss_dssp             CHHHHHHHCGGGTT-CEEECCC-----CTTHHHHHHHHHTCTT
T ss_pred             CHHHHHHHHHhcCC-ceEEEecCcccCHHHHHHHHHHHHhccc
Confidence            67778888888887 8999999999999999999999987654

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.71  E-value=3.7e-18  Score=117.85  Aligned_cols=109  Identities=17%  Similarity=0.237  Sum_probs=86.9

Q ss_pred             CCCCC-----------cccccccccccccC-CcEEEEEEeCCChhhHHHHHHHHHHH--------Hhh-h-CCCCCEEEE
Q 031970            1 MNVIG-----------QEDYNRLRPLSYRG-ADVFVLAFSLVSRASYENVLKKWIPE--------LQH-Y-SPGVPVVLV   58 (150)
Q Consensus         1 wDt~G-----------~e~~~~l~~~~~~~-ad~~i~v~d~~~~~s~~~~~~~~~~~--------i~~-~-~~~~piilv   58 (150)
                      |||||           +++|..++..|+++ ++++++||++.+..+++.+...|...        +.. . ..+.|+++|
T Consensus        49 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv  128 (190)
T 2cxx_A           49 IDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVA  128 (190)
T ss_dssp             EECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEE
T ss_pred             EECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEE
Confidence            89999           88899988889988 88888888888888888765666542        111 1 147999999


Q ss_pred             eeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCc------EEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           59 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS------YYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        59 ~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      +||+|+...             ..+....+++.++..      +++++||++|.|++++|+.+++.+.+.
T Consensus       129 ~nK~Dl~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~  185 (190)
T 2cxx_A          129 VNKLDKIKN-------------VQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  185 (190)
T ss_dssp             EECGGGCSC-------------HHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             eehHhccCc-------------HHHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence            999998753             245677788888862      379999999999999999999988754

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.70  E-value=9.4e-18  Score=126.59  Aligned_cols=119  Identities=18%  Similarity=0.202  Sum_probs=89.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDK   68 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~----------~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~   68 (150)
                      |||+||++|+.+|..||++++++|+|||++          +..++.+. ..|+..+....  .++|++|++||+|+....
T Consensus       166 wDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es-~~~~~~i~~~~~~~~~piiLv~NK~DL~~ek  244 (340)
T 4fid_A          166 IDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTES-IAVFKDIMTNEFLKGAVKLIFLNKMDLFEEK  244 (340)
T ss_dssp             EECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHH-HHHHHHHHHCGGGTTSEEEEEEECHHHHHHH
T ss_pred             ccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHH-HHHHHHHhhhhccCCCeEEEEEECchhhhhh
Confidence            999999999999999999999999999999          78889888 56666665432  589999999999987543


Q ss_pred             ccc---c---CCCCCCccCHHHHHHHHHH-c-------------------------CCcEEEEeccCCCCCHHHHHHHHH
Q 031970           69 HYL---A---DHPGLVPVTTAQGEELRKQ-I-------------------------GASYYIECSSKTQQNVKAVFDAAI  116 (150)
Q Consensus        69 ~~~---~---~~~~~~~v~~~~~~~~~~~-~-------------------------~~~~~~~~Sa~~~~~i~~~~~~l~  116 (150)
                      ...   .   .+.... ...+++..++.. +                         +...+.++||++..||..+|..+.
T Consensus       245 i~~~~l~~~fp~y~g~-~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~  323 (340)
T 4fid_A          245 LTKVPLNTIFPEYTGG-DNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAV  323 (340)
T ss_dssp             HHHSCGGGTCTTCCCT-TCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHH
T ss_pred             cCcchHHHhhhhhcCC-CCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHH
Confidence            210   0   011111 145555444432 2                         123788999999999999999999


Q ss_pred             HHHhC
Q 031970          117 KVVIK  121 (150)
Q Consensus       117 ~~~~~  121 (150)
                      +.++.
T Consensus       324 ~~Il~  328 (340)
T 4fid_A          324 DVIMK  328 (340)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99886

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.69  E-value=1.3e-17  Score=112.16  Aligned_cols=100  Identities=19%  Similarity=0.176  Sum_probs=74.2

Q ss_pred             CCCCCcccc-------cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccC
Q 031970            1 MNVIGQEDY-------NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD   73 (150)
Q Consensus         1 wDt~G~e~~-------~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~   73 (150)
                      |||||++.+       ...+..+++.+|++++|+|++++.+...  ..+...+..  .+.|+++|+||+|+.+...    
T Consensus        54 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~----  125 (161)
T 2dyk_A           54 VDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHEL----  125 (161)
T ss_dssp             EECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGGG----
T ss_pred             EECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccchH----
Confidence            899999984       3445568899999999999998655433  223333333  3689999999999876421    


Q ss_pred             CCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           74 HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                                ++..++ .++..+++++||+++.|++++|+.+++.+
T Consensus       126 ----------~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          126 ----------YLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             ----------GCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred             ----------hHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence                      222333 45655799999999999999999998865

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.69  E-value=7.6e-17  Score=111.85  Aligned_cols=107  Identities=21%  Similarity=0.241  Sum_probs=79.3

Q ss_pred             CCCCC----------cccccccccccccCC---cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970            1 MNVIG----------QEDYNRLRPLSYRGA---DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G----------~e~~~~l~~~~~~~a---d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      |||||          ++.|..++..+++.+   |++++|+|++++.++.+.  .+...+..  .+.|+++|+||+|+...
T Consensus        74 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~  149 (195)
T 1svi_A           74 VDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPK  149 (195)
T ss_dssp             EECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCG
T ss_pred             EECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCCh
Confidence            89999          889998888888887   999999999998887764  23333333  47899999999999765


Q ss_pred             cccccCCCCCCccCHHHHHH-HHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           68 KHYLADHPGLVPVTTAQGEE-LRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        68 ~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      ...        ....+++.. +....+ .+++++||+++.|++++|+.+.+.+.
T Consensus       150 ~~~--------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          150 GKW--------DKHAKVVRQTLNIDPE-DELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             GGH--------HHHHHHHHHHHTCCTT-SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHH--------HHHHHHHHHHHcccCC-CceEEEEccCCCCHHHHHHHHHHHhc
Confidence            421        001122222 222234 48999999999999999999998764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.68  E-value=1e-16  Score=119.73  Aligned_cols=109  Identities=14%  Similarity=0.141  Sum_probs=89.9

Q ss_pred             CCCCCccccc----------ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc
Q 031970            1 MNVIGQEDYN----------RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY   70 (150)
Q Consensus         1 wDt~G~e~~~----------~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~   70 (150)
                      |||||+.++.          .....+++++|++++|+|++++.++++. ..|+..+...  +.|+++|+||+|+..... 
T Consensus        64 vDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~~--~~pvilV~NK~Dl~~~~~-  139 (308)
T 3iev_A           64 LDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIKPL--NKPVIVVINKIDKIGPAK-  139 (308)
T ss_dssp             EECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGGG--CCCEEEEEECGGGSSSGG-
T ss_pred             EECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHhc--CCCEEEEEECccCCCCHH-
Confidence            8999997654          5566789999999999999999888886 6778877763  789999999999973222 


Q ss_pred             ccCCCCCCccCHHHHHHHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           71 LADHPGLVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                               ........+.+.++ ..+++++||+++.|++++|+.+.+.+.+.
T Consensus       140 ---------~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~  183 (308)
T 3iev_A          140 ---------NVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEG  183 (308)
T ss_dssp             ---------GGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred             ---------HHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence                     25667777888774 45899999999999999999999998654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.68  E-value=5.6e-17  Score=112.22  Aligned_cols=108  Identities=16%  Similarity=0.246  Sum_probs=81.7

Q ss_pred             CCCCC----------cccccccccccccCC---cEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970            1 MNVIG----------QEDYNRLRPLSYRGA---DVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLRE   66 (150)
Q Consensus         1 wDt~G----------~e~~~~l~~~~~~~a---d~~i~v~d~~~~~s~~~~-~~~~~~~i~~~~~~~piilv~nK~D~~~   66 (150)
                      |||||          ++.|..+++.+++.+   |++++|+|+++..+.... +..|+...     +.|+++|+||+|+.+
T Consensus        73 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~  147 (195)
T 3pqc_A           73 VDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVK  147 (195)
T ss_dssp             EECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred             EECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCC
Confidence            89999          888888888888876   999999999886544432 13343322     689999999999975


Q ss_pred             ccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           67 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      ...        ..+..+++..++...+..+++++||+++.|++++|+.+.+.+.+
T Consensus       148 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          148 MSE--------RAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             GGG--------HHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             hHH--------HHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            432        11244566677776564589999999999999999999988753

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.67  E-value=3.3e-17  Score=113.13  Aligned_cols=105  Identities=15%  Similarity=0.127  Sum_probs=82.6

Q ss_pred             CCCCCccccc------cccccccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQEDYN------RLRPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~~~------~l~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||+++|.      .++..+++  .+|++++|+|.++   ++.. ..|+..+..  .+.|+++|+||+|+......  
T Consensus        59 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~-~~~~~~~~~--~~~piilv~nK~Dl~~~~~~--  130 (188)
T 2wjg_A           59 VDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERN-LYLTLQLME--MGANLLLALNKMDLAKSLGI--  130 (188)
T ss_dssp             EECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHH-HHHHHHHHT--TTCCEEEEEECHHHHHHTTC--
T ss_pred             EECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHH-HHHHHHHHh--cCCCEEEEEEhhhccccccc--
Confidence            8999999986      34566665  5999999999976   4444 567766665  37899999999998764331  


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                              . .....+++.+++ +++++||+++.|++++|+.+++.+.+..
T Consensus       131 --------~-~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          131 --------E-IDVDKLEKILGV-KVVPLSAAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             --------C-CCHHHHHHHHTS-CEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred             --------h-HHHHHHHHHhCC-CeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence                    2 345677888887 9999999999999999999999987654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.65  E-value=1.6e-17  Score=113.97  Aligned_cols=102  Identities=14%  Similarity=0.135  Sum_probs=75.5

Q ss_pred             CCCCCcccccccc--------cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccc
Q 031970            1 MNVIGQEDYNRLR--------PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYL   71 (150)
Q Consensus         1 wDt~G~e~~~~l~--------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~   71 (150)
                      |||||++++....        ..+++++|++++|||++++.+++.  ..|+..+.+.. .++|+++|+||+|+...... 
T Consensus        57 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-  133 (172)
T 2gj8_A           57 IDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITGETLG-  133 (172)
T ss_dssp             EECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-
T ss_pred             EECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCcchhh-
Confidence            8999998643211        136899999999999999988874  46777776654 47999999999998643211 


Q ss_pred             cCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           72 ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                                      +++..+. +++++||+++.|++++|+.+.+.+...
T Consensus       134 ----------------~~~~~~~-~~~~~SA~~g~gv~~l~~~l~~~~~~~  167 (172)
T 2gj8_A          134 ----------------MSEVNGH-ALIRLSARTGEGVDVLRNHLKQSMGFD  167 (172)
T ss_dssp             ----------------EEEETTE-EEEECCTTTCTTHHHHHHHHHHHC---
T ss_pred             ----------------hhhccCC-ceEEEeCCCCCCHHHHHHHHHHHhhhc
Confidence                            0111343 899999999999999999999887543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.63  E-value=3.7e-16  Score=122.32  Aligned_cols=106  Identities=21%  Similarity=0.227  Sum_probs=83.9

Q ss_pred             CCCCC----------cccccccccc-cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccc
Q 031970            1 MNVIG----------QEDYNRLRPL-SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH   69 (150)
Q Consensus         1 wDt~G----------~e~~~~l~~~-~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~   69 (150)
                      |||||          +|+|..++.. +++.||++|+|+|+++..+.++  ..|...+..  .+.|+++|+||+|+.+...
T Consensus       248 ~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~  323 (456)
T 4dcu_A          248 VDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHE--AGKAVVIVVNKWDAVDKDE  323 (456)
T ss_dssp             TTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH--TTCEEEEEEECGGGSCCCS
T ss_pred             EECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHH--cCCCEEEEEEChhcCCCch
Confidence            99999          8888887765 8899999999999998766555  466666665  4799999999999986543


Q ss_pred             cccCCCCCCccCHHHHHHHHHHc----CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           70 YLADHPGLVPVTTAQGEELRKQI----GASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        70 ~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                                +..+++.+.++..    +..+++++||++|.|++++|+.+.+.+.
T Consensus       324 ----------~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~  368 (456)
T 4dcu_A          324 ----------STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE  368 (456)
T ss_dssp             ----------SHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHH
Confidence                      2445555555544    2358999999999999999999988774

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.63  E-value=5.7e-16  Score=113.02  Aligned_cols=103  Identities=17%  Similarity=0.158  Sum_probs=81.5

Q ss_pred             CCCCCcccccccc------cccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQEDYNRLR------PLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~~~~l~------~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||++.+...+      +.|+  ..+|++++|+|+++..+..    .|...+...  +.|+++|+||+|+......  
T Consensus        57 ~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~~~i--  128 (258)
T 3a1s_A           57 IDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKKTGM--  128 (258)
T ss_dssp             EECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHHTTC--
T ss_pred             EECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCccch--
Confidence            8999999987643      5566  5899999999999976543    355555543  7999999999998764431  


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                              . .....+++.+++ +++++||++|.|++++|+.+.+.+..
T Consensus       129 --------~-~~~~~l~~~lg~-~vi~~SA~~g~gi~el~~~i~~~~~~  167 (258)
T 3a1s_A          129 --------K-IDRYELQKHLGI-PVVFTSSVTGEGLEELKEKIVEYAQK  167 (258)
T ss_dssp             --------C-BCHHHHHHHHCS-CEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred             --------H-HHHHHHHHHcCC-CEEEEEeeCCcCHHHHHHHHHHHhhc
Confidence                    2 235677888897 99999999999999999999998753

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.63  E-value=1.8e-16  Score=116.50  Aligned_cols=102  Identities=15%  Similarity=0.162  Sum_probs=80.5

Q ss_pred             CCCCCccccc------cccccccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQEDYN------RLRPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~~~------~l~~~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||++.|.      .+.+.|+.  ++|++|+|+|+++.++..    .|...+.+  .++|+++|+||+|+......  
T Consensus        54 ~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~~----~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~--  125 (272)
T 3b1v_A           54 QDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERNL----YLTTQLIE--TGIPVTIALNMIDVLDGQGK--  125 (272)
T ss_dssp             EECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHHH----HHHHHHHH--TCSCEEEEEECHHHHHHTTC--
T ss_pred             EECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhHH----HHHHHHHh--cCCCEEEEEEChhhCCcCCc--
Confidence            8999999987      35566776  599999999999876543    45555554  37999999999998754331  


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                              . .....+++.+++ +++++||++|.|++++|+.+++.+.
T Consensus       126 --------~-~~~~~l~~~lg~-~vi~~SA~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          126 --------K-INVDKLSYHLGV-PVVATSALKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             --------C-CCHHHHHHHHTS-CEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred             --------H-HHHHHHHHHcCC-CEEEEEccCCCCHHHHHHHHHHHHh
Confidence                    2 345677788887 9999999999999999999998764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.62  E-value=8.2e-16  Score=108.90  Aligned_cols=111  Identities=10%  Similarity=0.041  Sum_probs=78.7

Q ss_pred             CCCCC----------cccccccccccccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970            1 MNVIG----------QEDYNRLRPLSYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G----------~e~~~~l~~~~~~~---ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      |||||          ++.|..+...|++.   +|++++|+|+++..+...  ..|+..+..  .+.|+++|+||+|+...
T Consensus        84 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~Dl~~~  159 (223)
T 4dhe_A           84 VDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAP--TGKPIHSLLTKCDKLTR  159 (223)
T ss_dssp             EECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGG--GCCCEEEEEECGGGSCH
T ss_pred             EcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHh--cCCCEEEEEeccccCCh
Confidence            89999          56667777777776   788999999998655444  356666665  36899999999998764


Q ss_pred             cccccCCCCCCccCHHHHHHHHHHc------CCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           68 KHYLADHPGLVPVTTAQGEELRKQI------GASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        68 ~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      ...        .............+      ...+++++||+++.|++++|+.|.+.+....
T Consensus       160 ~~~--------~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          160 QES--------INALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             HHH--------HHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             hhH--------HHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence            321        00112223333332      3358999999999999999999999887553

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.61  E-value=3.9e-16  Score=116.25  Aligned_cols=105  Identities=14%  Similarity=0.144  Sum_probs=79.3

Q ss_pred             CCCCCccc--------ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQED--------YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~--------~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||+++        +......+++++|++++|+|++++.+..+  ..+.+.+....++.|+++|+||+|+.+...   
T Consensus        60 ~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~---  134 (301)
T 1wf3_A           60 VDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE---  134 (301)
T ss_dssp             EECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH---
T ss_pred             ecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH---
Confidence            89999887        45556678999999999999998766654  344566766555799999999999875321   


Q ss_pred             CCCCCCccCHHHHHHHHHH-cCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           73 DHPGLVPVTTAQGEELRKQ-IGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                                . .....+. .+..+++++||+++.|++++++.+.+.+.+
T Consensus       135 ----------~-~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          135 ----------E-AMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPE  173 (301)
T ss_dssp             ----------H-HHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred             ----------H-HHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence                      0 1222222 344579999999999999999999987754

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.60  E-value=1.8e-15  Score=116.76  Aligned_cols=113  Identities=12%  Similarity=0.062  Sum_probs=83.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|......+++.+|++|+|+|+++..++... .+|+..+.... ..|+++|+||+|+.+....        ..
T Consensus        80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~--------~~  149 (403)
T 3sjy_A           80 IDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGIIG-VKNLIIVQNKVDVVSKEEA--------LS  149 (403)
T ss_dssp             EECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHHT-CCCEEEEEECGGGSCHHHH--------HH
T ss_pred             EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHcC-CCCEEEEEECccccchHHH--------HH
Confidence            89999999999999999999999999999998755555 56665555442 3589999999999764321        00


Q ss_pred             CHHHHHHHHHHcC--CcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           81 TTAQGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        81 ~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      ..+++..+...++  ..+++++||+++.|++++++.|.+.+..+.
T Consensus       150 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~  194 (403)
T 3sjy_A          150 QYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY  194 (403)
T ss_dssp             HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence            1123333333221  238999999999999999999999876543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.60  E-value=2.2e-16  Score=115.15  Aligned_cols=100  Identities=15%  Similarity=0.193  Sum_probs=77.8

Q ss_pred             CCCCCcccccc----------cccccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccc
Q 031970            1 MNVIGQEDYNR----------LRPLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK   68 (150)
Q Consensus         1 wDt~G~e~~~~----------l~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~   68 (150)
                      |||||+..+..          +.+.|+  ..+|++|+|+|+++.+++..+    ...+...  +.|+++|+||+|+....
T Consensus        53 vDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l----~~~l~~~--~~pvilv~NK~Dl~~~~  126 (256)
T 3iby_A           53 TDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYL----TSQLFEL--GKPVVVALNMMDIAEHR  126 (256)
T ss_dssp             EECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHH----HHHHTTS--CSCEEEEEECHHHHHHT
T ss_pred             EeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHH----HHHHHHc--CCCEEEEEEChhcCCcC
Confidence            89999998875          455677  899999999999997666543    3333332  78999999999987654


Q ss_pred             ccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           69 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                      .           .......+.+.+++ +++++||++|.|++++|+.+.+.
T Consensus       127 ~-----------~~~~~~~l~~~lg~-~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          127 G-----------ISIDTEKLESLLGC-SVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             T-----------CEECHHHHHHHHCS-CEEECBGGGTBSHHHHHHHHHTC
T ss_pred             C-----------cHHHHHHHHHHcCC-CEEEEECCCCCCHHHHHHHHHhh
Confidence            3           11224457777887 99999999999999999999887

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.59  E-value=8.8e-16  Score=119.53  Aligned_cols=106  Identities=19%  Similarity=0.223  Sum_probs=80.7

Q ss_pred             CCCCCc----------cccccccc-ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccc
Q 031970            1 MNVIGQ----------EDYNRLRP-LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH   69 (150)
Q Consensus         1 wDt~G~----------e~~~~l~~-~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~   69 (150)
                      |||||+          |+|..++. .+++.||++++|+|++++.++++.  .|...+..  .+.|+++|+||+|+.+...
T Consensus       228 ~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~~~~~  303 (436)
T 2hjg_A          228 VDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHE--AGKAVVIVVNKWDAVDKDE  303 (436)
T ss_dssp             TTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSCCCT
T ss_pred             EECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHH--cCCcEEEEEECccCCCcch
Confidence            999998          66665554 488899999999999999998885  67776664  3799999999999976432


Q ss_pred             cccCCCCCCccCHHHH-HHHHHHc---CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           70 YLADHPGLVPVTTAQG-EELRKQI---GASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        70 ~~~~~~~~~~v~~~~~-~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      .          ...+. ..+.+.+   +..+++++||++|.|++++|+.+.+.+.
T Consensus       304 ~----------~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~  348 (436)
T 2hjg_A          304 S----------TMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE  348 (436)
T ss_dssp             T----------HHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             H----------HHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHH
Confidence            1          22222 2222222   3348999999999999999999988775

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.59  E-value=2e-15  Score=121.47  Aligned_cols=107  Identities=19%  Similarity=0.279  Sum_probs=87.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|...+..+++.+|++|+|+|+++..+.+.. ..|......   ++|+++|+||+|+....            
T Consensus        76 iDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~~---~ipiIvViNKiDl~~a~------------  139 (599)
T 3cb4_D           76 IDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAMEM---DLEVVPVLNKIDLPAAD------------  139 (599)
T ss_dssp             EECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHHT---TCEEEEEEECTTSTTCC------------
T ss_pred             EECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHHC---CCCEEEeeeccCccccc------------
Confidence            89999999999999999999999999999998777776 667655543   68999999999997642            


Q ss_pred             CHHHHHHHHHHcCCc--EEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           81 TTAQGEELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      ......++...+++.  +++++||++|.|++++++.+++.+..+.
T Consensus       140 ~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~  184 (599)
T 3cb4_D          140 PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE  184 (599)
T ss_dssp             HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence            233445566666652  4899999999999999999999987654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.59  E-value=3e-15  Score=120.32  Aligned_cols=107  Identities=13%  Similarity=0.225  Sum_probs=87.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|......+++.+|++|+|+|+++..+.+.. ..|.....   .++|+++|+||+|+....            
T Consensus        78 iDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~---~~ipiIvviNKiDl~~a~------------  141 (600)
T 2ywe_A           78 IDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVE---QDLVIIPVINKIDLPSAD------------  141 (600)
T ss_dssp             ECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHH---TTCEEEEEEECTTSTTCC------------
T ss_pred             EECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---CCCCEEEEEeccCccccC------------
Confidence            89999999999888999999999999999998888776 67765544   379999999999987642            


Q ss_pred             CHHHHHHHHHHcCCc--EEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           81 TTAQGEELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      ......++...+++.  +++++||++|.|++++++.+++.+..+.
T Consensus       142 ~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~  186 (600)
T 2ywe_A          142 VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK  186 (600)
T ss_dssp             HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence            223445566666652  4899999999999999999999987654

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.58  E-value=4.8e-15  Score=116.52  Aligned_cols=102  Identities=12%  Similarity=0.124  Sum_probs=68.3

Q ss_pred             CCCCCcccccccc--------cccccCCcEEEEEEeCCChhhHHHH--HHHHHHHHhhhCCCCCEEEEeeCCCccccccc
Q 031970            1 MNVIGQEDYNRLR--------PLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHY   70 (150)
Q Consensus         1 wDt~G~e~~~~l~--------~~~~~~ad~~i~v~d~~~~~s~~~~--~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~   70 (150)
                      |||||++++...+        ..+++.+|++|+|+|++++.+++.+  ...|+..+.    +.|+++|+||+|+..... 
T Consensus       286 iDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~----~~piIvV~NK~Dl~~~~~-  360 (476)
T 3gee_A          286 TDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP----AAKFLTVANKLDRAANAD-  360 (476)
T ss_dssp             EC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT----TSEEEEEEECTTSCTTTH-
T ss_pred             EECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC----CCCEEEEEECcCCCCccc-
Confidence            8999998877544        3478999999999999999887432  034444433    799999999999876532 


Q ss_pred             ccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           71 LADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                                  .....+.+. +..+++++||+++.|++++++.+.+.+.
T Consensus       361 ------------~~~~~l~~~-~~~~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          361 ------------ALIRAIADG-TGTEVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             ------------HHHHHHHHH-HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             ------------hhHHHHHhc-CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence                        112334333 2248999999999999999999999887

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.57  E-value=9.4e-16  Score=118.91  Aligned_cols=103  Identities=17%  Similarity=0.216  Sum_probs=82.8

Q ss_pred             CCCCCcccccccccc-------cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccC
Q 031970            1 MNVIGQEDYNRLRPL-------SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD   73 (150)
Q Consensus         1 wDt~G~e~~~~l~~~-------~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~   73 (150)
                      |||||+++|..+...       +++.+|++|+|+|++... ..   ..|+..+...  +.|+++|+||+|+.....    
T Consensus        88 iDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~-~~---~~~l~~l~~~--~~piIvV~NK~Dl~~~~~----  157 (423)
T 3qq5_A           88 VDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTP-YE---DDVVNLFKEM--EIPFVVVVNKIDVLGEKA----  157 (423)
T ss_dssp             EECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCH-HH---HHHHHHHHHT--TCCEEEECCCCTTTTCCC----
T ss_pred             EECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChH-HH---HHHHHHHHhc--CCCEEEEEeCcCCCCccH----
Confidence            899999999877544       788999999999994332 22   4567666665  799999999999986542    


Q ss_pred             CCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           74 HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                              .+....+++.+++ +++++||+++.|++++|+.+.+.+.+.
T Consensus       158 --------~~~~~~l~~~~g~-~v~~vSAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          158 --------EELKGLYESRYEA-KVLLVSALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             --------THHHHHSSCCTTC-CCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred             --------HHHHHHHHHHcCC-CEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence                    2556667777786 999999999999999999999998544

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.57  E-value=3.4e-16  Score=115.06  Aligned_cols=104  Identities=14%  Similarity=0.174  Sum_probs=78.1

Q ss_pred             CCCCCcccccccc----------cccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccc
Q 031970            1 MNVIGQEDYNRLR----------PLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK   68 (150)
Q Consensus         1 wDt~G~e~~~~l~----------~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~   68 (150)
                      |||||++++..+.          +.|+  ..+|++|+|+|+++.++....    ...+...  ++|+++|+||+|+....
T Consensus        55 iDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~----~~~l~~~--~~p~ivv~NK~Dl~~~~  128 (274)
T 3i8s_A           55 VDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYL----TLQLLEL--GIPCIVALNMLDIAEKQ  128 (274)
T ss_dssp             EECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHH----HHHHHHH--TCCEEEEEECHHHHHHT
T ss_pred             EECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHH----HHHHHhc--CCCEEEEEECccchhhh
Confidence            8999999987432          2233  699999999999997665443    3333333  68999999999987643


Q ss_pred             ccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           69 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        69 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      .           .......+++.+++ +++++||++|.|++++|+.+.+.+...
T Consensus       129 ~-----------~~~~~~~l~~~lg~-~~i~~SA~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          129 N-----------IRIEIDALSARLGC-PVIPLVSTRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             T-----------EEECHHHHHHHHTS-CEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred             h-----------HHHHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence            2           11234567777887 999999999999999999998877644

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.57  E-value=3.4e-16  Score=110.63  Aligned_cols=101  Identities=6%  Similarity=0.087  Sum_probs=70.4

Q ss_pred             CCCCCcccccccccccccC----CcEEEEEEeCC-ChhhHHHHHHHHHHHHhhh-----CCCCCEEEEeeCCCccccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRG----ADVFVLAFSLV-SRASYENVLKKWIPELQHY-----SPGVPVVLVGTKLDLREDKHY   70 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~----ad~~i~v~d~~-~~~s~~~~~~~~~~~i~~~-----~~~~piilv~nK~D~~~~~~~   70 (150)
                      |||||+++|..++..+++.    +|++|+|||++ ++.++..+ ..|+..+...     ..++|+++|+||+|+......
T Consensus        60 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~  138 (218)
T 1nrj_B           60 VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARPP  138 (218)
T ss_dssp             EECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred             EECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccCCH
Confidence            8999999999999888887    99999999999 88898887 6777666543     257999999999999765421


Q ss_pred             ccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCC
Q 031970           71 LADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN  107 (150)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~  107 (150)
                      .    .......+++..++...+. +++++||+++.+
T Consensus       139 ~----~~~~~l~~~~~~~~~~~~~-~~~~~Sa~~~~~  170 (218)
T 1nrj_B          139 S----KIKDALESEIQKVIERRKK-SLNEVERKINEE  170 (218)
T ss_dssp             H----HHHHHHHHHHHHHHHHHHH-HHHC--------
T ss_pred             H----HHHHHHHHHHHHHHHHHhc-cccccccccccc
Confidence            0    0000013556677777775 899999998765

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.56  E-value=1.5e-14  Score=109.98  Aligned_cols=107  Identities=16%  Similarity=0.164  Sum_probs=83.4

Q ss_pred             CCCCCccccccc---------ccccccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccc
Q 031970            1 MNVIGQEDYNRL---------RPLSYRGADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH   69 (150)
Q Consensus         1 wDt~G~e~~~~l---------~~~~~~~ad~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~   69 (150)
                      |||||+.++...         ...+...+|++++|+|++++.  +++.. ..|+..+....++.|+++|+||+|+.....
T Consensus       219 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~~~  297 (357)
T 2e87_A          219 IDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADEEN  297 (357)
T ss_dssp             EECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCHHH
T ss_pred             EeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCChHH
Confidence            899998764321         112445799999999999877  67776 788888887655899999999999875432


Q ss_pred             cccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           70 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        70 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                                  ..+...++...+. +++++||++|.|++++++.+.+.+..
T Consensus       298 ------------~~~~~~~~~~~~~-~~~~iSA~~g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          298 ------------IKRLEKFVKEKGL-NPIKISALKGTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             ------------HHHHHHHHHHTTC-CCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHhcCC-CeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence                        2445566667776 89999999999999999999998854

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.55  E-value=1.8e-14  Score=107.37  Aligned_cols=98  Identities=16%  Similarity=0.114  Sum_probs=81.2

Q ss_pred             CcccccccccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccC-H
Q 031970            5 GQEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT-T   82 (150)
Q Consensus         5 G~e~~~~l~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~-~   82 (150)
                      .+++++.+.+.+++++|++++|+|++++. +++.+ +.|+..+..  .++|+++|+||+|+.+...          +. .
T Consensus        65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~~~--~~~~~ilV~NK~DL~~~~~----------v~~~  131 (302)
T 2yv5_A           65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVYEY--FKVEPVIVFNKIDLLNEEE----------KKEL  131 (302)
T ss_dssp             ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHHHH--TTCEEEEEECCGGGCCHHH----------HHHH
T ss_pred             eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHHHh--CCCCEEEEEEcccCCCccc----------cHHH
Confidence            38899999999999999999999999986 88876 899887765  4799999999999975431          11 3


Q ss_pred             HHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHH
Q 031970           83 AQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI  116 (150)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~  116 (150)
                      .+...+++..+. +++++||+++.|+++++..+.
T Consensus       132 ~~~~~~~~~~g~-~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          132 ERWISIYRDAGY-DVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             HHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHTT
T ss_pred             HHHHHHHHHCCC-eEEEEECCCCCCHHHHHhhcc
Confidence            455666777787 999999999999999998764

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.55  E-value=4.1e-15  Score=112.51  Aligned_cols=109  Identities=17%  Similarity=0.269  Sum_probs=86.3

Q ss_pred             CCCCCccc----ccccccccccC---CcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcccc
Q 031970            1 MNVIGQED----YNRLRPLSYRG---ADVFVLAFSLVS---RASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G~e~----~~~l~~~~~~~---ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~   67 (150)
                      |||||+.+    +..+...+++.   ++++|+|+|+++   +.+++++ ..|..++....   .++|+++|+||+|+...
T Consensus       211 ~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~  289 (342)
T 1lnz_A          211 ADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEA  289 (342)
T ss_dssp             EEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred             ecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCC
Confidence            89999654    44565666554   999999999998   7888887 88988888765   37999999999998642


Q ss_pred             cccccCCCCCCccCHHHHHHHHHHcCC-cEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970           68 KHYLADHPGLVPVTTAQGEELRKQIGA-SYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  124 (150)
Q Consensus        68 ~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  124 (150)
                                    .+....+++.++. .+++++||+++.|++++++.|.+.+.+.+.
T Consensus       290 --------------~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          290 --------------AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             --------------HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             --------------HHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence                          2345566666652 278999999999999999999999876543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.53  E-value=6.2e-15  Score=108.01  Aligned_cols=105  Identities=18%  Similarity=0.120  Sum_probs=80.6

Q ss_pred             CCCCCcccccc------cccccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQEDYNR------LRPLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~~~~------l~~~~~--~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||+..+..      +.+.|+  .++|++++|+|+++....    ..|...+... ...|+++|+||+|+......  
T Consensus        55 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~----~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~--  127 (271)
T 3k53_A           55 VDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMRN----LFLTLELFEM-EVKNIILVLNKFDLLKKKGA--  127 (271)
T ss_dssp             EECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH----HHHHHHHHHT-TCCSEEEEEECHHHHHHHTC--
T ss_pred             EeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchhh----HHHHHHHHhc-CCCCEEEEEEChhcCccccc--
Confidence            89999999877      556666  689999999999986432    2333344433 23899999999998764431  


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                              . .....+++.+++ +++++||+++.|+.++|+.+.+.+...
T Consensus       128 --------~-~~~~~l~~~lg~-~~~~~Sa~~g~gi~~l~~~i~~~~~~~  167 (271)
T 3k53_A          128 --------K-IDIKKMRKELGV-PVIPTNAKKGEGVEELKRMIALMAEGK  167 (271)
T ss_dssp             --------C-CCHHHHHHHHSS-CEEECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred             --------H-HHHHHHHHHcCC-cEEEEEeCCCCCHHHHHHHHHHHHhcc
Confidence                    1 126677788887 999999999999999999999987644

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.53  E-value=3.4e-14  Score=112.97  Aligned_cols=63  Identities=11%  Similarity=0.148  Sum_probs=52.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      |||||+++|......+++.+|++|+|+|+++..+.+.. ..| ..+...  ++|+++|+||+|+...
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~-~~~~~~--~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           87 LDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLM-EVCRLR--HTPIMTFINKMDRDTR  149 (528)
T ss_dssp             ECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHH-HHHHTT--TCCEEEEEECTTSCCS
T ss_pred             EECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHHc--CCCEEEEEeCCCCccc
Confidence            89999999999999999999999999999998877775 444 334332  7899999999998643

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.53  E-value=1e-14  Score=113.57  Aligned_cols=103  Identities=18%  Similarity=0.186  Sum_probs=74.5

Q ss_pred             CCCCCcccc---------cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccc
Q 031970            1 MNVIGQEDY---------NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL   71 (150)
Q Consensus         1 wDt~G~e~~---------~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~   71 (150)
                      |||||++..         ......++++||++|+|+|+++..+..+.  .+...+.+.  ++|+++|+||+|+...    
T Consensus        54 ~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~----  125 (439)
T 1mky_A           54 VDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLRE----  125 (439)
T ss_dssp             EECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHH----
T ss_pred             EECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCccc----
Confidence            899998753         34456689999999999999987665541  222223322  6899999999997532    


Q ss_pred             cCCCCCCccCHHHH-HHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           72 ADHPGLVPVTTAQG-EELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        72 ~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                               ..... ..+. ..++.+++++||++|.|++++++.+.+.+.+
T Consensus       126 ---------~~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          126 ---------FEREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             ---------HHHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ---------cHHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence                     01222 3333 4565478999999999999999999998864

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.53  E-value=2.6e-14  Score=110.36  Aligned_cols=108  Identities=17%  Similarity=0.146  Sum_probs=74.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS----RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG   76 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~----~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~   76 (150)
                      ||||||++|.......+..+|++|+|+|+++    +.+++.+ ..|    .. ....|+++|+||+|+.+....      
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~----~~-l~~~~iivv~NK~Dl~~~~~~------  153 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-MAL----EI-LGIDKIIIVQNKIDLVDEKQA------  153 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-HHH----HH-TTCCCEEEEEECTTSSCTTTT------
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-HHH----HH-cCCCeEEEEEEccCCCCHHHH------
Confidence            8999999998877778888999999999995    5566654 322    21 123589999999999764321      


Q ss_pred             CCccCHHHHHHHHHHc--CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           77 LVPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        77 ~~~v~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                        ....+++..+++.+  ...+++++||+++.|++++++.|.+.+..+
T Consensus       154 --~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~  199 (408)
T 1s0u_A          154 --EENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP  199 (408)
T ss_dssp             --TTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred             --HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence              11345566666543  123899999999999999999999887654

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.53  E-value=1.4e-13  Score=110.77  Aligned_cols=114  Identities=16%  Similarity=0.154  Sum_probs=77.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccc-c----
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL-A----   72 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~-~----   72 (150)
                      |||||+++|..++..+++.+|++|+|+|+++   +.+++.+ . +   +..  .++|+++++||+|+....... .    
T Consensus        75 iDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~-~---l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~  147 (594)
T 1g7s_A           75 IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEAL-N-I---LRM--YRTPFVVAANKIDRIHGWRVHEGRPFM  147 (594)
T ss_dssp             ECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-H-H---HHH--TTCCEEEEEECGGGSTTCCCCTTCCHH
T ss_pred             EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-H-H---HHH--cCCeEEEEecccccccccccccCCchH
Confidence            8999999999999999999999999999999   7777654 2 2   222  368999999999986421100 0    


Q ss_pred             --CCCCCCccCH---H---HHHHHHHHcC--------------CcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           73 --DHPGLVPVTT---A---QGEELRKQIG--------------ASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        73 --~~~~~~~v~~---~---~~~~~~~~~~--------------~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                        .......+..   +   +........+              ..+++++||++|.|+.++++.+...+..
T Consensus       148 e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          148 ETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             HHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence              0000000000   0   1111112222              2379999999999999999999987753

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.52  E-value=4.8e-15  Score=117.82  Aligned_cols=108  Identities=18%  Similarity=0.208  Sum_probs=79.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||++.|..++..+++.+|++|+|+|+++....+.. +.| ..+..  .++|+++|+||+|+.+....         .
T Consensus        57 iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~-e~l-~~~~~--~~vPiIVViNKiDl~~~~~~---------~  123 (537)
T 3izy_P           57 LDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTV-ESI-QHAKD--AHVPIVLAINKCDKAEADPE---------K  123 (537)
T ss_dssp             EECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHH-HHH-HHHHT--TTCCEEECCBSGGGTTTSCC---------S
T ss_pred             EECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHH-HHH-HHHHH--cCCcEEEEEecccccccchH---------H
Confidence            89999999999999999999999999999997666654 333 33332  36899999999998754321         0


Q ss_pred             CHHHHHHH---HHHcC-CcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           81 TTAQGEEL---RKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        81 ~~~~~~~~---~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      ...+...+   +..++ ..+++++||++|.|++++++.+...+..
T Consensus       124 v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~  168 (537)
T 3izy_P          124 VKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEM  168 (537)
T ss_dssp             SSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTT
T ss_pred             HHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhc
Confidence            11122111   11221 2389999999999999999999988753

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.51  E-value=3.3e-14  Score=111.97  Aligned_cols=105  Identities=19%  Similarity=0.156  Sum_probs=80.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      |||||+++|......++..+|++|+|+|+++   +.+.+.+  .+   +..  .++|+++|+||+|+.+....       
T Consensus        78 iDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l--~~---~~~--~~ip~IvviNK~Dl~~~~~~-------  143 (482)
T 1wb1_A           78 VDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM--LI---LDH--FNIPIIVVITKSDNAGTEEI-------  143 (482)
T ss_dssp             CCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH--HH---HHH--TTCCBCEEEECTTSSCHHHH-------
T ss_pred             EECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH--HH---HHH--cCCCEEEEEECCCcccchhH-------
Confidence            8999999999888889999999999999998   5566554  12   222  26899999999999753211       


Q ss_pred             CccCHHHHHHHHHHc-C--CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           78 VPVTTAQGEELRKQI-G--ASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        78 ~~v~~~~~~~~~~~~-~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                       ....+++..+++.. +  ..+++++||++|.|++++++.|.+.+.
T Consensus       144 -~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          144 -KRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             -HHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence             01334555666555 2  138999999999999999999999875

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.49  E-value=6.6e-15  Score=114.60  Aligned_cols=103  Identities=17%  Similarity=0.143  Sum_probs=72.2

Q ss_pred             CCCCCcc--------cccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQE--------DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e--------~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||++        ++...+..++++||++|+|+|++++.++.+  ..+...+.+  .++|+++|+||+|+......  
T Consensus        56 ~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~--~~~pvilv~NK~D~~~~~~~--  129 (436)
T 2hjg_A           56 IDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRAN--  129 (436)
T ss_dssp             EC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT--CCSCEEEEEECCCC-----C--
T ss_pred             EECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCccchhh--
Confidence            8999996        667777889999999999999999877765  344544543  47899999999998653211  


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                                  ...+. ..++.+++++||++|.|+.++++.+.+.+.+.
T Consensus       130 ------------~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~  166 (436)
T 2hjg_A          130 ------------IYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNI  166 (436)
T ss_dssp             ------------CCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGGGC
T ss_pred             ------------HHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcCcc
Confidence                        01111 24544789999999999999999999988643

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.48  E-value=4.9e-14  Score=110.94  Aligned_cols=100  Identities=13%  Similarity=0.158  Sum_probs=76.1

Q ss_pred             CCCCCcc-cccccc--------cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccc
Q 031970            1 MNVIGQE-DYNRLR--------PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL   71 (150)
Q Consensus         1 wDt~G~e-~~~~l~--------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~   71 (150)
                      |||||++ ++....        ..+++.||++|+|+|++++.++++.  .+++.+    .+.|+++|+||+|+...    
T Consensus       296 ~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~--~il~~l----~~~piivV~NK~DL~~~----  365 (482)
T 1xzp_A          296 VDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEK----  365 (482)
T ss_dssp             EESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCC----
T ss_pred             EECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHH--HHHHHh----cCCCEEEEEECcccccc----
Confidence            8999998 765422        3578899999999999999888764  344443    37899999999998643    


Q ss_pred             cCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           72 ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                              +..+++..++. .+. +++++||+++.|++++++.|.+.+.
T Consensus       366 --------~~~~~~~~~~~-~~~-~~i~iSAktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          366 --------INEEEIKNKLG-TDR-HMVKISALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             --------CCHHHHHHHHT-CST-TEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred             --------cCHHHHHHHhc-CCC-cEEEEECCCCCCHHHHHHHHHHHHh
Confidence                    13344444432 333 7999999999999999999998765

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.48  E-value=1.4e-14  Score=111.82  Aligned_cols=111  Identities=19%  Similarity=0.219  Sum_probs=83.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|......+++.+|++|+|+|+++....+.  .+|+..+...  ++| +++|+||+|+......       ..
T Consensus        80 iDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~-------~~  148 (405)
T 2c78_A           80 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFMNKVDMVDDPEL-------LD  148 (405)
T ss_dssp             EECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHHT--TCCCEEEEEECGGGCCCHHH-------HH
T ss_pred             EECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEECccccCcHHH-------HH
Confidence            8999999999888889999999999999998765544  3555555543  688 8999999999742210       00


Q ss_pred             cCHHHHHHHHHHcCC----cEEEEeccCCCCC------------------HHHHHHHHHHHHhCC
Q 031970           80 VTTAQGEELRKQIGA----SYYIECSSKTQQN------------------VKAVFDAAIKVVIKP  122 (150)
Q Consensus        80 v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~------------------i~~~~~~l~~~~~~~  122 (150)
                      ....++..+++.+++    .+++++||+++.|                  +.++++.+.+.+..+
T Consensus       149 ~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p  213 (405)
T 2c78_A          149 LVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP  213 (405)
T ss_dssp             HHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence            123456677777763    4899999999987                  778888888777644

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.47  E-value=6e-14  Score=108.41  Aligned_cols=108  Identities=14%  Similarity=0.107  Sum_probs=78.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS----RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG   76 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~----~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~   76 (150)
                      |||||+++|.......+..+|++|+|+|+++    +.+.+.+ ..| ..+    ...|+++|+||+|+.+....      
T Consensus        88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~-~~~----~~~~iivviNK~Dl~~~~~~------  155 (410)
T 1kk1_A           88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MAL-QII----GQKNIIIAQNKIELVDKEKA------  155 (410)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHH-HHH----TCCCEEEEEECGGGSCHHHH------
T ss_pred             EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHH-HHc----CCCcEEEEEECccCCCHHHH------
Confidence            8999999998877777888999999999995    4566554 222 222    23589999999999764310      


Q ss_pred             CCccCHHHHHHHHHH---cCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           77 LVPVTTAQGEELRKQ---IGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        77 ~~~v~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                        ....+++..+++.   .+. +++++||+++.|++++++.|.+.+..+.
T Consensus       156 --~~~~~~i~~~l~~~~~~~~-~~i~vSA~~g~gi~~L~~~l~~~~~~p~  202 (410)
T 1kk1_A          156 --LENYRQIKEFIEGTVAENA-PIIPISALHGANIDVLVKAIEDFIPTPK  202 (410)
T ss_dssp             --HHHHHHHHHHHTTSTTTTC-CEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             --HHHHHHHHHHHHhcCcCCC-eEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence              0123344555543   233 8999999999999999999998876543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.46  E-value=3.8e-14  Score=109.16  Aligned_cols=111  Identities=20%  Similarity=0.173  Sum_probs=81.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|......+++.+|++|+|+|+++....+.. +.| ..+...  ++| +++++||+|+......       ..
T Consensus        71 iDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~-e~l-~~~~~~--~vp~iivviNK~Dl~~~~~~-------~~  139 (397)
T 1d2e_A           71 TDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTR-EHL-LLARQI--GVEHVVVYVNKADAVQDSEM-------VE  139 (397)
T ss_dssp             EECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHH-HHHHHT--TCCCEEEEEECGGGCSCHHH-------HH
T ss_pred             EECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHH-HHH-HHHHHc--CCCeEEEEEECcccCCCHHH-------HH
Confidence            89999999998888899999999999999986544432 333 333332  688 7899999999752210       00


Q ss_pred             cCHHHHHHHHHHcCC----cEEEEeccCCCCC----------HHHHHHHHHHHHhCC
Q 031970           80 VTTAQGEELRKQIGA----SYYIECSSKTQQN----------VKAVFDAAIKVVIKP  122 (150)
Q Consensus        80 v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~----------i~~~~~~l~~~~~~~  122 (150)
                      ....++..+++.+++    .+++++||+++.|          +.++++.+.+.+..+
T Consensus       140 ~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p  196 (397)
T 1d2e_A          140 LVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVP  196 (397)
T ss_dssp             HHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCC
Confidence            133566677777764    3899999999764          889999998887654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.45  E-value=3.2e-13  Score=100.50  Aligned_cols=106  Identities=16%  Similarity=0.145  Sum_probs=78.9

Q ss_pred             CCCCCcc---------cccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccc
Q 031970            1 MNVIGQE---------DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL   71 (150)
Q Consensus         1 wDt~G~e---------~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~   71 (150)
                      |||||++         .+......+++.+|++++|+|.++ -+..+  ..+.+.+..  .+.|+++|+||+|+.....  
T Consensus        61 iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~--~~i~~~l~~--~~~P~ilvlNK~D~~~~~~--  133 (301)
T 1ega_A           61 VDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDD--EMVLNKLRE--GKAPVILAVNKVDNVQEKA--  133 (301)
T ss_dssp             ESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHH--HHHHHHHHS--SSSCEEEEEESTTTCCCHH--
T ss_pred             EECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHH--HHHHHHHHh--cCCCEEEEEECcccCccHH--
Confidence            7999998         455666788999999999999987 33322  233333432  3689999999999875221  


Q ss_pred             cCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           72 ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                              .....+..+.+.++...++++||+++.|++++++.+...+.+
T Consensus       134 --------~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          134 --------DLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             --------HHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred             --------HHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence                    133555666666776579999999999999999999987654

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.44  E-value=1.1e-13  Score=107.77  Aligned_cols=107  Identities=15%  Similarity=0.157  Sum_probs=74.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHH------HHHHHHHhhhCCCCCEEEEeeCCCcccccccccCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL------KKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH   74 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~------~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~   74 (150)
                      |||||+++|......+++.+|++|+|+|+++ .+|+...      .+....+... .-.|+++++||+|+.+....    
T Consensus        89 iDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~----  162 (435)
T 1jny_A           89 IDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNKMDLTEPPYD----  162 (435)
T ss_dssp             CCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEECGGGSSSTTC----
T ss_pred             EECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc-CCCeEEEEEEcccCCCcccc----
Confidence            8999999999988889999999999999999 6666430      1222222221 22469999999999762100    


Q ss_pred             CCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHHHH
Q 031970           75 PGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAVFD  113 (150)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~~  113 (150)
                      .+......+++..+++.+++    .+++++||++|.|+.+++.
T Consensus       163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            00001134667777777763    3799999999999986543

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.43  E-value=2.9e-13  Score=106.08  Aligned_cols=101  Identities=16%  Similarity=0.202  Sum_probs=68.4

Q ss_pred             CCCCCccccccccc--------ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQEDYNRLRP--------LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~~~~l~~--------~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||+.++....+        .+++.+|++++|+|++++.+...  ..|+..+.    +.|+++|+||+|+......  
T Consensus       277 iDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~~--  348 (462)
T 3geh_A          277 LDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQLI--  348 (462)
T ss_dssp             CC--------------------CCCCSCSEEEEEEETTTCSCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGGS--
T ss_pred             EECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH--HHHHHhcc----CCcEEEEEECCCCCcchhh--
Confidence            89999877654433        37889999999999999887766  46666664    3799999999999765432  


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                              .  ....+.  .+ .+++++||+++.|++++++.+.+.+...
T Consensus       349 --------~--~~~~~~--~~-~~~i~iSAktg~Gi~eL~~~i~~~~~~~  385 (462)
T 3geh_A          349 --------T--SLEYPE--NI-TQIVHTAAAQKQGIDSLETAILEIVQTG  385 (462)
T ss_dssp             --------T--TCCCCT--TC-CCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred             --------H--HHHHhc--cC-CcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence                    1  000111  23 3899999999999999999999988654

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.41  E-value=2.9e-13  Score=106.62  Aligned_cols=103  Identities=14%  Similarity=0.074  Sum_probs=66.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHH-----HHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN-----VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP   75 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~-----~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~   75 (150)
                      |||||+++|......+++.+|++|+|+|+++..++..     ...+.+. +.......|+|+|+||+|+.+....     
T Consensus       116 iDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~-~~~~~~~~~iIvviNK~Dl~~~~~~-----  189 (483)
T 3p26_A          116 VDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASSLGIHNLIIAMNKMDNVDWSQQ-----  189 (483)
T ss_dssp             ECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHH-HHHHTTCCCEEEEEECGGGGTTCHH-----
T ss_pred             EECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHH-HHHHcCCCcEEEEEECcCcccchHH-----
Confidence            8999999999999999999999999999999754321     1012222 2222233579999999999763211     


Q ss_pred             CCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHH
Q 031970           76 GLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA  110 (150)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  110 (150)
                       .......++..+...++.    .+++++||++|.|+.+
T Consensus       190 -~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          190 -RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             -HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             -HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence             000012344444444442    4899999999999875

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.41  E-value=1.3e-13  Score=107.35  Aligned_cols=102  Identities=14%  Similarity=0.101  Sum_probs=73.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||+++|...+..+++.+|++|+|+|+++....+.  .+++..+... ...|+++|+||+|+.+....      ....
T Consensus       109 iDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt--~~~l~~~~~~-~~~~iIvviNK~Dl~~~~~~------~~~~  179 (434)
T 1zun_B          109 ADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT--RRHSYIASLL-GIKHIVVAINKMDLNGFDER------VFES  179 (434)
T ss_dssp             EECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH--HHHHHHHHHT-TCCEEEEEEECTTTTTSCHH------HHHH
T ss_pred             EECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc-CCCeEEEEEEcCcCCcccHH------HHHH
Confidence            8999999999888889999999999999998654443  2344333332 22369999999999752110      0001


Q ss_pred             CHHHHHHHHHHcC--C--cEEEEeccCCCCCHHHH
Q 031970           81 TTAQGEELRKQIG--A--SYYIECSSKTQQNVKAV  111 (150)
Q Consensus        81 ~~~~~~~~~~~~~--~--~~~~~~Sa~~~~~i~~~  111 (150)
                      ...++..+++.++  .  .+++++||++|.|+.++
T Consensus       180 i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          180 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            2355667777776  1  37999999999999884

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.41  E-value=2.1e-13  Score=104.23  Aligned_cols=107  Identities=11%  Similarity=-0.013  Sum_probs=77.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCE-EEEee-CCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGT-KLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~n-K~D~~~~~~~~~~~~~~~   78 (150)
                      |||||+++|......+++.+|++|+|+| ++.. .... .+++..+...  ++|. ++++| |+|+ +....        
T Consensus        65 iDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~-~~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~--------  130 (370)
T 2elf_A           65 VDAHSYPKTLKSLITALNISDIAVLCIP-PQGL-DAHT-GECIIALDLL--GFKHGIIALTRSDST-HMHAI--------  130 (370)
T ss_dssp             EECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCC-CHHH-HHHHHHHHHT--TCCEEEEEECCGGGS-CHHHH--------
T ss_pred             EECCChHHHHHHHHHHHHHCCEEEEEEc-CCCC-cHHH-HHHHHHHHHc--CCCeEEEEEEeccCC-CHHHH--------
Confidence            8999999998877788999999999999 5433 3333 4555555443  5787 89999 9998 43210        


Q ss_pred             ccCHHHHHHHHHHcC--CcEEEE--eccCC---CCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIG--ASYYIE--CSSKT---QQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~--~~~~~~--~Sa~~---~~~i~~~~~~l~~~~~~  121 (150)
                      ....+++..+++.++  ..++++  +||++   +.|++++++.|.+.+..
T Consensus       131 ~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          131 DELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             HHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence            001244555555443  248999  99999   99999999999988754

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.41  E-value=2.9e-13  Score=105.46  Aligned_cols=106  Identities=18%  Similarity=0.177  Sum_probs=71.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhh---HH---HHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRAS---YE---NVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLAD   73 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~   73 (150)
                      ||||||++|......+++.||++|+|+|+++...   |+   .. .+.+..+..  .++| +|+|+||+|+......   
T Consensus       100 iDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt-~e~l~~~~~--~~v~~iIvviNK~Dl~~~~~~---  173 (439)
T 3j2k_7          100 LDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQT-REHAMLAKT--AGVKHLIVLINKMDDPTVNWS---  173 (439)
T ss_pred             EECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchH-HHHHHHHHH--cCCCeEEEEeecCCCcccchH---
Confidence            8999999999999999999999999999998632   11   11 122222222  2567 9999999998642100   


Q ss_pred             CCCCCccCHHHHHHHHHHcCC-----cEEEEeccCCCCCHHHHHH
Q 031970           74 HPGLVPVTTAQGEELRKQIGA-----SYYIECSSKTQQNVKAVFD  113 (150)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  113 (150)
                       .........++..+++..++     .+++++||++|.|+.++.+
T Consensus       174 -~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          174 -NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             -HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence             00000133455556666553     3799999999999999655

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.40  E-value=3.1e-14  Score=112.33  Aligned_cols=104  Identities=19%  Similarity=0.336  Sum_probs=72.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc-ccCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY-LADHPG   76 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~-~~~~~~   76 (150)
                      ||||||+.|..++..+++.+|++|+|+|+++   +.+.+.+     ..+..  .++|+++++||+|+.+.... ....-.
T Consensus        56 iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l-----~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~  128 (501)
T 1zo1_I           56 LDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI-----QHAKA--AQVPVVVAVNKIDKPEADPDRVKNELS  128 (501)
T ss_dssp             ECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH-----HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCC
T ss_pred             EECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH-----HHHHh--cCceEEEEEEeccccccCHHHHHHHHH
Confidence            8999999999999999999999999999998   4455443     12222  36899999999999753211 000000


Q ss_pred             CCccCHHHHHHHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           77 LVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        77 ~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                      ....       +...++ ..+++++||++|.|++++|+.+...
T Consensus       129 ~~~~-------~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~  164 (501)
T 1zo1_I          129 QYGI-------LPEEWGGESQFVHVSAKAGTGIDELLDAILLQ  164 (501)
T ss_dssp             CCCC-------CTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred             Hhhh-------hHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence            0000       111222 1389999999999999999998754

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.40  E-value=6.5e-14  Score=109.92  Aligned_cols=106  Identities=20%  Similarity=0.174  Sum_probs=60.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChh---hHHHH--HHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SYENV--LKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADH   74 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~---s~~~~--~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~   74 (150)
                      ||||||++|......+++.+|++|+|+|+++..   +|+..  ..+.+.....  .++| +|+++||+|+......    
T Consensus       126 iDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~~~~~----  199 (467)
T 1r5b_A          126 LDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEPSVQWS----  199 (467)
T ss_dssp             CCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTSTTCSSC----
T ss_pred             EECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECccCCCcccc----
Confidence            899999999999999999999999999999863   22211  0111111222  3677 9999999999642100    


Q ss_pred             CCCCccCHHHHHHHHHHc-CC-----cEEEEeccCCCCCHHHHH
Q 031970           75 PGLVPVTTAQGEELRKQI-GA-----SYYIECSSKTQQNVKAVF  112 (150)
Q Consensus        75 ~~~~~v~~~~~~~~~~~~-~~-----~~~~~~Sa~~~~~i~~~~  112 (150)
                      .+.......++..+++.. ++     .+++++||++|.|+.+++
T Consensus       200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            000001334566666665 43     379999999999998765

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.39  E-value=2.8e-13  Score=114.92  Aligned_cols=111  Identities=15%  Similarity=0.180  Sum_probs=82.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      ||||||++|......+++.+|++|+|+|+++....+.  .+++..+...  ++| +|+|+||+|+.+....       ..
T Consensus       364 IDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QT--rEhL~ll~~l--gIP~IIVVINKiDLv~d~e~-------le  432 (1289)
T 3avx_A          364 VDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT--REHILLGRQV--GVPYIIVFLNKCDMVDDEEL-------LE  432 (1289)
T ss_dssp             EECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTH--HHHHHHHHHH--TCSCEEEEEECCTTCCCHHH-------HH
T ss_pred             EECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHH--HHHHHHHHHc--CCCeEEEEEeecccccchhh-------HH
Confidence            8999999999888889999999999999998654443  2444444443  688 7899999999753210       00


Q ss_pred             cCHHHHHHHHHHcCC----cEEEEeccCCC--------CCHHHHHHHHHHHHhCC
Q 031970           80 VTTAQGEELRKQIGA----SYYIECSSKTQ--------QNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        80 v~~~~~~~~~~~~~~----~~~~~~Sa~~~--------~~i~~~~~~l~~~~~~~  122 (150)
                      ....++..+++.+++    .+++++||++|        .|+.++++.+.+.+..+
T Consensus       433 ~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P  487 (1289)
T 3avx_A          433 LVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP  487 (1289)
T ss_dssp             HHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence            133566677777763    48999999999        56899999988877644

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.38  E-value=2.2e-12  Score=100.48  Aligned_cols=106  Identities=20%  Similarity=0.176  Sum_probs=71.5

Q ss_pred             CCCCCcccccccc------------cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccc
Q 031970            1 MNVIGQEDYNRLR------------PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK   68 (150)
Q Consensus         1 wDt~G~e~~~~l~------------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~   68 (150)
                      |||||+.++..+.            ..+++.+|++++|+|+++..+.++.  .+...+..  .+.|+++|+||+|+....
T Consensus       233 ~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~--~~~~~ilv~NK~Dl~~~~  308 (439)
T 1mky_A          233 VDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER--RGRASVVVFNKWDLVVHR  308 (439)
T ss_dssp             SSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSTTG
T ss_pred             EECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCCCch
Confidence            8999986554332            2367789999999999987777653  34444443  378999999999987643


Q ss_pred             ccccCCCCCCccCHHHHH-HHHHH---cCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           69 HYLADHPGLVPVTTAQGE-ELRKQ---IGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        69 ~~~~~~~~~~~v~~~~~~-~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      ..          ...+.. .+.+.   .+..+++++||++|.|++++|+.+.+.+.
T Consensus       309 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~  354 (439)
T 1mky_A          309 EK----------RYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA  354 (439)
T ss_dssp             GG----------CHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             hh----------HHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            21          233222 22222   23348999999999999999999987664

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.38  E-value=3.4e-13  Score=95.03  Aligned_cols=106  Identities=7%  Similarity=-0.072  Sum_probs=68.5

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHH---HHHHhhhC--CCCCEEEEeeCC-CcccccccccCCC
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW---IPELQHYS--PGVPVVLVGTKL-DLREDKHYLADHP   75 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~---~~~i~~~~--~~~piilv~nK~-D~~~~~~~~~~~~   75 (150)
                      |..||++++.+|+.||.++|++|+|+|.+|....+ ...++   ...+....  .++|++|.+||. |+...        
T Consensus       108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--------  178 (227)
T 3l82_B          108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--------  178 (227)
T ss_dssp             ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--------
T ss_pred             ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--------
Confidence            34599999999999999999999999999985443 21333   33333322  479999999995 66543        


Q ss_pred             CCCccCHHHHHHHHH----HcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           76 GLVPVTTAQGEELRK----QIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        76 ~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                          ++..++.....    ...+ .+..|||.+|+|+.+-+++|++.+..
T Consensus       179 ----ms~~EI~e~L~L~~l~R~W-~Iq~csA~TGeGL~EGLdWL~~~l~~  223 (227)
T 3l82_B          179 ----MPCFYLAHELHLNLLNHPW-LVQDTEAETLTGFLNGIEWILEEVES  223 (227)
T ss_dssp             ----CCHHHHHHHTTGGGGCSCE-EEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred             ----CCHHHHHHHcCCcCCCCCE-EEEEeECCCCcCHHHHHHHHHHHHHh
Confidence                23344332221    1234 68899999999999999999877643

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.35  E-value=2.1e-12  Score=98.45  Aligned_cols=113  Identities=15%  Similarity=0.198  Sum_probs=78.5

Q ss_pred             CCCCCc---------ccccccccccccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCccccc
Q 031970            1 MNVIGQ---------EDYNRLRPLSYRGADVFVLAFSLVSRA--SYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDK   68 (150)
Q Consensus         1 wDt~G~---------e~~~~l~~~~~~~ad~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~   68 (150)
                      |||+|.         +.|....+ .+..||++++|+|++++.  ..+.. ..|...+.... .+.|+++|+||+|+.+..
T Consensus       231 ~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~  308 (364)
T 2qtf_A          231 VDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGD  308 (364)
T ss_dssp             EECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSC
T ss_pred             EeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCch
Confidence            799997         33433333 578999999999999877  55554 56666555543 578999999999987532


Q ss_pred             ccccCCCCCCccCHHHHHHHHHHc-C-CcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970           69 HYLADHPGLVPVTTAQGEELRKQI-G-ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  124 (150)
Q Consensus        69 ~~~~~~~~~~~v~~~~~~~~~~~~-~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  124 (150)
                      ..         .....+..+++.+ . ..+++++||+++.|++++++.+.+.+..+..
T Consensus       309 ~~---------~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~~  357 (364)
T 2qtf_A          309 LY---------KKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLSL  357 (364)
T ss_dssp             HH---------HHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred             HH---------HHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccCC
Confidence            10         0112333444554 2 1368999999999999999999988765443

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.35  E-value=8.7e-13  Score=91.14  Aligned_cols=67  Identities=6%  Similarity=0.150  Sum_probs=56.6

Q ss_pred             CCCCCcccccccccccccC----CcEEEEEEeCC-ChhhHHHHHHHHHHHHhhh-----CCCCCEEEEeeCCCccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRG----ADVFVLAFSLV-SRASYENVLKKWIPELQHY-----SPGVPVVLVGTKLDLREDK   68 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~----ad~~i~v~d~~-~~~s~~~~~~~~~~~i~~~-----~~~~piilv~nK~D~~~~~   68 (150)
                      |||||++.|...+..+++.    +|++|+|||++ ++.++..+ ..|+..+...     .++.|+++|+||+|+....
T Consensus        96 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A           96 VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             EEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             EECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence            8999999999888888876    89999999999 89999887 6776666542     2479999999999997654

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.31  E-value=2.2e-12  Score=100.98  Aligned_cols=101  Identities=13%  Similarity=0.112  Sum_probs=70.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChh---hH----HHHHHHHHHHHhhhCCCCC-EEEEeeCCCccccccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SY----ENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~---s~----~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~   72 (150)
                      ||||||++|......+++.+|++|+|+|+++..   +|    +.  .+++..+..  .++| +|+|+||+|+.+....  
T Consensus        90 iDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt--~~~~~~~~~--~~v~~iivviNK~Dl~~~~~~--  163 (458)
T 1f60_A           90 IDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQT--REHALLAFT--LGVRQLIVAVNKMDSVKWDES--  163 (458)
T ss_dssp             EECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHH--HHHHHHHHH--TTCCEEEEEEECGGGGTTCHH--
T ss_pred             EECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhH--HHHHHHHHH--cCCCeEEEEEEccccccCCHH--
Confidence            899999999998888999999999999999863   22    22  222222332  2566 9999999999742110  


Q ss_pred             CCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHH
Q 031970           73 DHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAV  111 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~  111 (150)
                          .......++..+++.+++    .+++++||++|.|+.++
T Consensus       164 ----~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          164 ----RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             ----HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             ----HHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence                000133456667777764    48999999999998743

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.31  E-value=5.9e-13  Score=104.16  Aligned_cols=102  Identities=17%  Similarity=0.152  Sum_probs=72.8

Q ss_pred             CCCCC--------cccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIG--------QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G--------~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||        ++++......++++||++|+|+|..+..+..+  .++...+.+  .++|+++|+||+|+.....   
T Consensus        76 iDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d--~~l~~~l~~--~~~pvilV~NK~D~~~~~~---  148 (456)
T 4dcu_A           76 IDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRA---  148 (456)
T ss_dssp             ECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH--HHHHHHHTT--CCSCEEEEEECC----------
T ss_pred             EECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH--HHHHHHHHH--cCCCEEEEEECccchhhhh---
Confidence            89999        88888888999999999999999988655554  244444444  4799999999999764321   


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                                 ....+. ..++..++++||++|.|+.++++.+.+.+..
T Consensus       149 -----------~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          149 -----------NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             -------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred             -----------hHHHHH-HcCCCceEEeecccccchHHHHHHHHhhccc
Confidence                       111111 2333357899999999999999999887754

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.31  E-value=1.5e-12  Score=105.10  Aligned_cols=99  Identities=13%  Similarity=0.093  Sum_probs=68.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA----------SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY   70 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~----------s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~   70 (150)
                      |||||+++|......+++.||++|+|+|+++..          +.+.+     ..+.. ....|+|+|+||+|+.+....
T Consensus       250 iDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l-----~~~~~-lgi~~iIVVvNKiDl~~~~~~  323 (611)
T 3izq_1          250 VDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHM-----LLASS-LGIHNLIIAMNKMDNVDWSQQ  323 (611)
T ss_dssp             EECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHH-----HHHHT-TTCCEEEEEEECTTTTTTCHH
T ss_pred             EECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHH-----HHHHH-cCCCeEEEEEecccccchhHH
Confidence            899999999999999999999999999999742          22222     12222 122459999999998763211


Q ss_pred             ccCCCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHHH
Q 031970           71 LADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAV  111 (150)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~  111 (150)
                            .......++..++...+.    .+++++||++|.|+.++
T Consensus       324 ------~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          324 ------RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             ------HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             ------HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence                  000123444555555543    38999999999999876

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.30  E-value=3.4e-12  Score=104.00  Aligned_cols=61  Identities=21%  Similarity=0.223  Sum_probs=50.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR   65 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~   65 (150)
                      |||||+++|......+++.+|++++|+|+++....+.  ..++..+...  ++|+++|+||+|+.
T Consensus        79 iDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt--~~~~~~~~~~--~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           79 LDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGT--ERAWTVAERL--GLPRMVVVTKLDKG  139 (665)
T ss_dssp             EECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHHHT--TCCEEEEEECGGGC
T ss_pred             EeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhH--HHHHHHHHHc--cCCEEEEecCCchh
Confidence            8999999999988999999999999999988766554  3444444443  79999999999986

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.30  E-value=3.3e-13  Score=99.54  Aligned_cols=105  Identities=16%  Similarity=0.066  Sum_probs=72.8

Q ss_pred             CCCCCcc-------------cccccccccccCCcEEE-EEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970            1 MNVIGQE-------------DYNRLRPLSYRGADVFV-LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE   66 (150)
Q Consensus         1 wDt~G~e-------------~~~~l~~~~~~~ad~~i-~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~   66 (150)
                      |||||+.             .+..+...|++.++.+| +|+|+++..+..+. ..|+..+..  .+.|+++|+||+|+..
T Consensus       130 vDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~~~~~~~~~--~~~~~i~V~NK~Dl~~  206 (299)
T 2aka_B          130 VDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LKIAKEVDP--QGQRTIGVITKLDLMD  206 (299)
T ss_dssp             EECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HHHHHHHCT--TCSSEEEEEECGGGSC
T ss_pred             EeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-HHHHHHhCC--CCCeEEEEEEccccCC
Confidence            8999964             45566777898988776 79999987665554 356665553  3689999999999976


Q ss_pred             ccccccCCCCCCccCHHHHHHHHHH--cCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           67 DKHYLADHPGLVPVTTAQGEELRKQ--IGASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        67 ~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                      ....          ....+......  .++.+++++||+++.|++++++.+.+.
T Consensus       207 ~~~~----------~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          207 EGTD----------ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             TTCC----------CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             CCch----------HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            4321          22222110001  133478899999999999999998874

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.28  E-value=2.8e-12  Score=93.07  Aligned_cols=110  Identities=16%  Similarity=0.156  Sum_probs=70.6

Q ss_pred             CCCCCccccccccc-----------ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEee-CCCccccc
Q 031970            1 MNVIGQEDYNRLRP-----------LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT-KLDLREDK   68 (150)
Q Consensus         1 wDt~G~e~~~~l~~-----------~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~n-K~D~~~~~   68 (150)
                      |||||+.++.....           .+++++|++|+|+|+++........-.|+..+.......|+++|+| |+|+....
T Consensus        76 iDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~  155 (260)
T 2xtp_A           76 IDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS  155 (260)
T ss_dssp             EECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC
T ss_pred             EECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc
Confidence            89999987643322           2678999999999998733322211233333321111357776666 99987432


Q ss_pred             ccccCCCCCCccCH-------HHHHHHHHHcCCcE--E--EEeccCCCCCHHHHHHHHHHHHhC
Q 031970           69 HYLADHPGLVPVTT-------AQGEELRKQIGASY--Y--IECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        69 ~~~~~~~~~~~v~~-------~~~~~~~~~~~~~~--~--~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      .           ..       ..+..+.+..+...  +  +++||+++.|++++|..+.+.+..
T Consensus       156 ~-----------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          156 L-----------MDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             H-----------HHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H-----------HHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            1           11       33445666655311  2  789999999999999999998865

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.26  E-value=3e-11  Score=96.12  Aligned_cols=63  Identities=14%  Similarity=0.220  Sum_probs=49.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      |||||+++|......+++.+|++|+|+|+++....+.  ..+......  .++|+++++||+|+...
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~--~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           87 LDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRL--RDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             ECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTT--TTCCEEEEEECTTSCCS
T ss_pred             EECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHH--cCCCEEEEEcCcCCccc
Confidence            8999999999888889999999999999998654433  233333333  37999999999998653

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.25  E-value=7.7e-12  Score=92.02  Aligned_cols=107  Identities=7%  Similarity=-0.080  Sum_probs=73.5

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHH--HHHHHHHHhhh--CCCCCEEEEeeC-CCcccccccccCCCC
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHY--SPGVPVVLVGTK-LDLREDKHYLADHPG   76 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~--~~~~~~~i~~~--~~~~piilv~nK-~D~~~~~~~~~~~~~   76 (150)
                      |.+||+.++.+|+.||.++|++|+|+|.+|.+.++..  +.++...+...  ..++|++|.+|| -|+...-        
T Consensus       193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Am--------  264 (312)
T 3l2o_B          193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM--------  264 (312)
T ss_dssp             ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBC--------
T ss_pred             CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCC--------
Confidence            3578999999999999999999999999998754321  02222333322  257999999997 5775432        


Q ss_pred             CCccCHHHHHHHHH----HcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           77 LVPVTTAQGEELRK----QIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        77 ~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                          +..++.+...    ...+ .+..|||.+|+|+.+-+++|++.+..
T Consensus       265 ----s~~EI~e~L~L~~l~r~W-~Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          265 ----PCFYLAHELHLNLLNHPW-LVQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             ----CHHHHHHHTTGGGGCSCE-EEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             ----CHHHHHHHcCCccCCCcE-EEEecccCCCcCHHHHHHHHHHHHHh
Confidence                3343332221    1234 68899999999999999999988753

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.25  E-value=1.2e-11  Score=94.33  Aligned_cols=98  Identities=20%  Similarity=0.238  Sum_probs=75.7

Q ss_pred             CcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHH
Q 031970            5 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ   84 (150)
Q Consensus         5 G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~   84 (150)
                      .+|+|.++.+.+++.++++++|+|++++.      ..|...+.+...+.|+++|+||+|+.....           ..+.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~-----------~~~~  117 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKSV-----------KHDK  117 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTTS-----------CHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCccc-----------CHHH
Confidence            36788899999999999999999999853      356666666666899999999999975432           2233


Q ss_pred             H----HHHHHHcCCc--EEEEeccCCCCCHHHHHHHHHHHH
Q 031970           85 G----EELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        85 ~----~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      .    ..+++..+..  +++++||+++.|++++++.+.+..
T Consensus       118 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          118 VKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            3    3345666652  789999999999999999997754

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.24  E-value=1.8e-11  Score=100.20  Aligned_cols=63  Identities=17%  Similarity=0.226  Sum_probs=53.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      |||||+++|...+..+++.+|++|+|+|+++..+.+.. ..|.. +..  .++|+++|+||+|+...
T Consensus        82 iDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~-~~~--~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           82 IDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQ-AEK--YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             ECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHH-HHH--TTCCEEEEEECTTSTTC
T ss_pred             EECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHH-HHH--cCCCEEEEEECCCcccC
Confidence            89999999999999999999999999999998888775 55543 333  27999999999998753

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.23  E-value=3.8e-13  Score=102.41  Aligned_cols=107  Identities=7%  Similarity=0.050  Sum_probs=59.1

Q ss_pred             CCCCCc-------cccccccc-------ccccCCcEE-----------EEEEeCCC-hhhHHHHHHHHHHHHhhhCCCCC
Q 031970            1 MNVIGQ-------EDYNRLRP-------LSYRGADVF-----------VLAFSLVS-RASYENVLKKWIPELQHYSPGVP   54 (150)
Q Consensus         1 wDt~G~-------e~~~~l~~-------~~~~~ad~~-----------i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~p   54 (150)
                      |||||+       +.|..++.       .|+++++++           +++|++++ ..++..+...|...+.   .++|
T Consensus       100 ~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~p  176 (361)
T 2qag_A          100 VDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVN  176 (361)
T ss_dssp             EC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SC
T ss_pred             EEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCC
Confidence            899999       88888876       666655443           36666655 4445444124555443   5799


Q ss_pred             EEEEeeCCCcccccccccCCCCCCccCH--HHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           55 VVLVGTKLDLREDKHYLADHPGLVPVTT--AQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        55 iilv~nK~D~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      +|+|+||+|+.....          +..  ..+..++..+++ +++++||+++.+ ++.|..+.+.+...
T Consensus       177 iIlV~NK~Dl~~~~e----------v~~~k~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~~~  234 (361)
T 2qag_A          177 IVPVIAKADTLTLKE----------RERLKKRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLKAS  234 (361)
T ss_dssp             EEEEEECCSSSCHHH----------HHHHHHHHHHHTTCC-C-CSCCCC----------CHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHH----------HHHHHHHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence            999999999876432          122  466677777787 899999999998 88888888777543

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.22  E-value=3.8e-12  Score=102.47  Aligned_cols=106  Identities=19%  Similarity=0.173  Sum_probs=66.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKH   69 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~----------~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~   69 (150)
                      |||||+++|......+++.+|++|+|+|+++.          .+.+.+     ..+...  ++| +|+|+||+|+.....
T Consensus       260 iDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l-----~~~~~l--gip~iIvviNKiDl~~~~~  332 (592)
T 3mca_A          260 GDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA-----YLLRAL--GISEIVVSVNKLDLMSWSE  332 (592)
T ss_dssp             CEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH-----HHHHHS--SCCCEEEEEECGGGGTTCH
T ss_pred             EECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH-----HHHHHc--CCCeEEEEEeccccccccH
Confidence            89999999999999999999999999999853          344432     122222  465 999999999875211


Q ss_pred             cccCCCCCCccCHHHHHHHH-HHcCC----cEEEEeccCCCCCHH--------------HHHHHHHHHH
Q 031970           70 YLADHPGLVPVTTAQGEELR-KQIGA----SYYIECSSKTQQNVK--------------AVFDAAIKVV  119 (150)
Q Consensus        70 ~~~~~~~~~~v~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i~--------------~~~~~l~~~~  119 (150)
                      .      .......++..+. +..++    .+++++||++|.|+.              .+++.|...+
T Consensus       333 ~------~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~  395 (592)
T 3mca_A          333 D------RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV  395 (592)
T ss_dssp             H------HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred             H------HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence            0      0001223444444 44454    279999999999998              6777766544

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.22  E-value=3.9e-11  Score=98.36  Aligned_cols=63  Identities=19%  Similarity=0.226  Sum_probs=51.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      |||||+++|...+..+++.+|++|+|+|+++....+.. ..|. .+..  .++|+++|+||+|+...
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~-~~~~--~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWR-QANK--YKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHH-HHHH--cCCCEEEEEeCCCcccc
Confidence            89999999999999999999999999999988766654 4443 3332  37999999999998653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.17  E-value=2.6e-11  Score=92.55  Aligned_cols=99  Identities=16%  Similarity=0.232  Sum_probs=73.8

Q ss_pred             CCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHH
Q 031970            4 IGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA   83 (150)
Q Consensus         4 ~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~   83 (150)
                      ..||+|.++.+.++.+++++++|+|++++.+      .|.+.+.+...+.|+++|+||+|+.....           ..+
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~~-----------~~~  118 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRSV-----------KYP  118 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTTC-----------CHH
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCcc-----------CHH
Confidence            3588899999999999999999999999763      24444444455799999999999976432           223


Q ss_pred             HHH----HHHHHcCC--cEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           84 QGE----ELRKQIGA--SYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        84 ~~~----~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      ...    .+++..+.  .+++.+||+++.|++++++.+.+..
T Consensus       119 ~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          119 KLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            333    33555665  3789999999999999999997765

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.16  E-value=9e-11  Score=96.07  Aligned_cols=63  Identities=22%  Similarity=0.278  Sum_probs=52.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      |||||+.+|......+++.+|++|+|+|+++..+.+.. ..|. .+...  +.|+++|+||+|+...
T Consensus        80 iDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~-~~~~~--~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           80 IDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWR-QATTY--GVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             ECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHH-HHHHT--TCCEEEEEECTTSTTC
T ss_pred             EECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHH-HHHHc--CCCEEEEEECCCcccc
Confidence            89999999999999999999999999999998877765 4554 34432  7899999999998653

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.15  E-value=3.9e-11  Score=86.01  Aligned_cols=113  Identities=16%  Similarity=0.164  Sum_probs=72.1

Q ss_pred             CCCCC-----------cccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCccc
Q 031970            1 MNVIG-----------QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLRE   66 (150)
Q Consensus         1 wDt~G-----------~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~   66 (150)
                      |||||           ++.+......+++++|++|+|+|+++....+   ..|+..+....   ...|+++|+||+|+..
T Consensus        83 iDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~---~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~  159 (239)
T 3lxx_A           83 VDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEE---HKATEKILKMFGERARSFMILIFTRKDDLG  159 (239)
T ss_dssp             EECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHH---HHHHHHHHHHHHHHHGGGEEEEEECGGGC-
T ss_pred             EECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHH---HHHHHHHHHHhhhhccceEEEEEeCCccCC
Confidence            89999           4455555566778999999999998644422   23333333211   2469999999999876


Q ss_pred             ccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCC-----CCHHHHHHHHHHHHhC
Q 031970           67 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ-----QNVKAVFDAAIKVVIK  121 (150)
Q Consensus        67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~-----~~i~~~~~~l~~~~~~  121 (150)
                      .....    .......+.+..+.+..+. .++.+++..+     .++.++|..+...+.+
T Consensus       160 ~~~~~----~~i~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          160 DTNLH----DYLREAPEDIQDLMDIFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             ---------------CHHHHHHHHHHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHH----HHHHhchHHHHHHHHHcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            43210    0000012467788888886 7777777644     6899999988887754

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.11  E-value=1.8e-10  Score=80.43  Aligned_cols=109  Identities=12%  Similarity=0.044  Sum_probs=72.1

Q ss_pred             CCCCCccc----------ccccccccc---cCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970            1 MNVIGQED----------YNRLRPLSY---RGADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLRE   66 (150)
Q Consensus         1 wDt~G~e~----------~~~l~~~~~---~~ad~~i~v~d~~~~~s~~~~-~~~~~~~i~~~~~~~piilv~nK~D~~~   66 (150)
                      |||||+..          |......++   ..++++++++|++++.++.+. ...|+   ..  .+.|+++|+||+|+.+
T Consensus        77 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~--~~~~~~~v~nK~D~~s  151 (210)
T 1pui_A           77 VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD--SNIAVLVLLTKADKLA  151 (210)
T ss_dssp             EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH--TTCCEEEEEECGGGSC
T ss_pred             EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH--cCCCeEEEEecccCCC
Confidence            79999843          333333444   478999999999987665431 12333   22  3689999999999875


Q ss_pred             ccccccCCCCCCccCHHHHHHHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           67 DKHYLADHPGLVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ....        ......+..++...+ ...++++||+++.|++++++.+.+.+.+.
T Consensus       152 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~  200 (210)
T 1pui_A          152 SGAR--------KAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM  200 (210)
T ss_dssp             HHHH--------HHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred             chhH--------HHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence            4210        001244555555554 34788999999999999999998877543

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.10  E-value=1.1e-10  Score=95.54  Aligned_cols=118  Identities=11%  Similarity=0.081  Sum_probs=77.2

Q ss_pred             CCCCCcccc---cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCC
Q 031970            1 MNVIGQEDY---NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         1 wDt~G~e~~---~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      |||||....   ......|++.||++|+|+|++++.+..+. ..|...+...  +.|+++|+||+|+...........+.
T Consensus       179 iDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l~~~--~~~iiiVlNK~Dl~~~~~~~~ee~e~  255 (695)
T 2j69_A          179 VDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYIKGR--GLTVFFLVNAWDQVRESLIDPDDVEE  255 (695)
T ss_dssp             EECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHTTTS--CCCEEEEEECGGGGGGGCSSTTCHHH
T ss_pred             EECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHHHhh--CCCEEEEEECcccccccccChhhHHH
Confidence            799997763   34556789999999999999998888776 6666555433  67999999999987543100000000


Q ss_pred             CccCHHHHHH-----HHHHcC-------CcEEEEeccC--------------CCCCHHHHHHHHHHHHhC
Q 031970           78 VPVTTAQGEE-----LRKQIG-------ASYYIECSSK--------------TQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        78 ~~v~~~~~~~-----~~~~~~-------~~~~~~~Sa~--------------~~~~i~~~~~~l~~~~~~  121 (150)
                      ..........     +....+       ..+++++||+              ++.|+.+++..+.+.+..
T Consensus       256 l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          256 LQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence            0000001111     111111       1368999999              999999999999887754

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.09  E-value=4.4e-10  Score=86.97  Aligned_cols=109  Identities=16%  Similarity=0.158  Sum_probs=79.8

Q ss_pred             CCCCCccc----cccccccc---ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCccccccc
Q 031970            1 MNVIGQED----YNRLRPLS---YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHY   70 (150)
Q Consensus         1 wDt~G~e~----~~~l~~~~---~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~~~~~~   70 (150)
                      |||+|..+    +..+...+   +..++.+++++|++ ...+.++ ..|..++....   .+.|.++|+||+|+... . 
T Consensus       210 ~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-  285 (416)
T 1udx_A          210 ADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-  285 (416)
T ss_dssp             EECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-
T ss_pred             EeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-
Confidence            79999743    33333333   34699999999998 5566665 66666666554   25899999999998754 1 


Q ss_pred             ccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970           71 LADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  124 (150)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  124 (150)
                                ....+...++..+. +++.+||+++.|++++++.+.+.+...+.
T Consensus       286 ----------~~~~l~~~l~~~g~-~vi~iSA~~g~gi~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          286 ----------AVKALADALAREGL-AVLPVSALTGAGLPALKEALHALVRSTPP  328 (416)
T ss_dssp             ----------HHHHHHHHHHTTTS-CEEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred             ----------HHHHHHHHHHhcCC-eEEEEECCCccCHHHHHHHHHHHHHhccc
Confidence                      33455555555665 89999999999999999999999976543

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.07  E-value=2.4e-11  Score=89.03  Aligned_cols=87  Identities=7%  Similarity=0.001  Sum_probs=50.7

Q ss_pred             CcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 031970           20 ADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI   98 (150)
Q Consensus        20 ad~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   98 (150)
                      +|+++++++.+... .-.+  ..+.+.+..   ++|+|+|+||+|+......        ......+.......++ +++
T Consensus       116 ~~~~l~~i~~~~~~~~~~d--~~~l~~l~~---~~pvi~V~nK~D~~~~~e~--------~~~~~~i~~~l~~~~i-~v~  181 (274)
T 3t5d_A          116 VQCCLYFIAPSGHGLKPLD--IEFMKRLHE---KVNIIPLIAKADTLTPEEC--------QQFKKQIMKEIQEHKI-KIY  181 (274)
T ss_dssp             CCEEEEEECSCCSSCCHHH--HHHHHHHTT---TSCEEEEESSGGGSCHHHH--------HHHHHHHHHHHHHTTC-CCC
T ss_pred             eeEEEEEecCCCCCCCHHH--HHHHHHHhc---cCCEEEEEeccCCCCHHHH--------HHHHHHHHHHHHHcCC-eEE
Confidence            78999999877632 3333  345555554   7999999999998653221        0122344555666776 899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHh
Q 031970           99 ECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        99 ~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      ++||+++.|+.+++..|...+.
T Consensus       182 ~~sa~~~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          182 EFPETDDEEENKLVKKIKDRLP  203 (274)
T ss_dssp             CC-----------CHHHHHTCS
T ss_pred             cCCCCCChhHHHHHHHHhcCCC
Confidence            9999999999999999988763

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.03  E-value=1.5e-11  Score=93.36  Aligned_cols=101  Identities=14%  Similarity=0.114  Sum_probs=70.1

Q ss_pred             CCCCCcccc-------------cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCccc
Q 031970            1 MNVIGQEDY-------------NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLRE   66 (150)
Q Consensus         1 wDt~G~e~~-------------~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~   66 (150)
                      |||||+.++             ..+...|++++|++|+|+|..+.....   ..|+..+.... .+.|+++|+||+|+..
T Consensus       141 vDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~---~~~~~l~~~~~~~~~~~i~V~nK~Dl~~  217 (360)
T 3t34_A          141 IDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT---SDAIKISREVDPSGDRTFGVLTKIDLMD  217 (360)
T ss_dssp             EECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG---CHHHHHHHHSCTTCTTEEEEEECGGGCC
T ss_pred             EECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC---HHHHHHHHHhcccCCCEEEEEeCCccCC
Confidence            899999887             556678999999999999886544332   12333333333 3689999999999976


Q ss_pred             ccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHH
Q 031970           67 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA  115 (150)
Q Consensus        67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l  115 (150)
                      ....          ....+......++. +|+++|++++.++++.+...
T Consensus       218 ~~~~----------~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~~  255 (360)
T 3t34_A          218 KGTD----------AVEILEGRSFKLKY-PWVGVVNRSQADINKNVDMI  255 (360)
T ss_dssp             TTCC----------SHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCHH
T ss_pred             Cccc----------HHHHHcCccccccC-CeEEEEECChHHhccCCCHH
Confidence            4331          33444444445565 89999999998887765543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.01  E-value=4.7e-11  Score=88.67  Aligned_cols=109  Identities=13%  Similarity=0.161  Sum_probs=68.0

Q ss_pred             CCCCCccc-------------ccccccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970            1 MNVIGQED-------------YNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE   66 (150)
Q Consensus         1 wDt~G~e~-------------~~~l~~~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~   66 (150)
                      |||||..+             +..+...+++++|++++|+|.++.. +.... ..+...+..  .+.|+++|+||+|+..
T Consensus       136 vDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~-~~i~~~~~~--~~~~~i~v~NK~Dl~~  212 (315)
T 1jwy_B          136 VDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA-LQLAKEVDP--EGKRTIGVITKLDLMD  212 (315)
T ss_dssp             EECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH-HHHHHHHCS--SCSSEEEEEECTTSSC
T ss_pred             EECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHH-HHHHHHhCC--CCCcEEEEEcCcccCC
Confidence            79999764             4556677899999999999984332 21111 234444443  3689999999999875


Q ss_pred             ccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccC---C---CCCHHHHHHHHHHHHhCCC
Q 031970           67 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK---T---QQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        67 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~---~---~~~i~~~~~~l~~~~~~~~  123 (150)
                      ....          ....+......++. +++++|+.   +   +.|+.+++..+...+...+
T Consensus       213 ~~~~----------~~~~~~~~~~~~~~-~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~  264 (315)
T 1jwy_B          213 KGTD----------AMEVLTGRVIPLTL-GFIGVINRSQEDIIAKKSIRESLKSEILYFKNHP  264 (315)
T ss_dssp             SSCC----------CHHHHTTSSSCCTT-CEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCT
T ss_pred             cchH----------HHHHHhCCCccCCC-CeEEEecCChhhhccCCCHHHHHHHHHHHHhCCC
Confidence            4321          22222211111112 55555554   4   6899999999998886543

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.00  E-value=6.1e-10  Score=80.48  Aligned_cols=113  Identities=10%  Similarity=-0.060  Sum_probs=65.9

Q ss_pred             CCCCCccccccccc------ccccCCcEEEEEEeCCChhhHHHHHHHH--H-HHHhhhCCCCCEEEEeeCCCcccccccc
Q 031970            1 MNVIGQEDYNRLRP------LSYRGADVFVLAFSLVSRASYENVLKKW--I-PELQHYSPGVPVVLVGTKLDLREDKHYL   71 (150)
Q Consensus         1 wDt~G~e~~~~l~~------~~~~~ad~~i~v~d~~~~~s~~~~~~~~--~-~~i~~~~~~~piilv~nK~D~~~~~~~~   71 (150)
                      |||||+.++..+..      .++.+ +++++++|.....+..+....+  . .....  .+.|+++|+||+|+.......
T Consensus       114 iDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~~~~~~  190 (262)
T 1yrb_A          114 IDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSEEEKE  190 (262)
T ss_dssp             EECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHHHHH
T ss_pred             EeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccccccHH
Confidence            79999987654432      14466 8888898876433332221111  1 11111  268999999999987532100


Q ss_pred             cCCCCCCcc--CHHHH-HH-----------------HHHHcCC-cEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           72 ADHPGLVPV--TTAQG-EE-----------------LRKQIGA-SYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        72 ~~~~~~~~v--~~~~~-~~-----------------~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      .    ....  ..... ..                 +++.++. .+++++||+++.|++++++.+.+.+.
T Consensus       191 ~----~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          191 R----HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             H----HHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             H----HHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            0    0000  00000 00                 1234442 27899999999999999999988764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.98  E-value=1.5e-09  Score=76.41  Aligned_cols=86  Identities=19%  Similarity=0.103  Sum_probs=59.7

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcC-CcEE
Q 031970           19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASYY   97 (150)
Q Consensus        19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~   97 (150)
                      .++++++|+|+++.....   ..+....     +.|+++|+||+|+.+....          ....+...++..+ ..++
T Consensus       129 ~~~~~i~vvd~~~~~~~~---~~~~~~~-----~~~~iiv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~i  190 (221)
T 2wsm_A          129 GENYRVVMVSVTEGDDVV---EKHPEIF-----RVADLIVINKVALAEAVGA----------DVEKMKADAKLINPRAKI  190 (221)
T ss_dssp             SCSEEEEEEEGGGCTTHH---HHCHHHH-----HTCSEEEEECGGGHHHHTC----------CHHHHHHHHHHHCTTSEE
T ss_pred             ccCcEEEEEeCCCcchhh---hhhhhhh-----hcCCEEEEecccCCcchhh----------HHHHHHHHHHHhCCCCeE
Confidence            578899999998754321   1222221     4799999999998653211          4455555555543 2489


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           98 IECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        98 ~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      +++||+++.|++++++.+.+.+...
T Consensus       191 ~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          191 IEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             EEeecCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999887543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.95  E-value=8.2e-10  Score=81.39  Aligned_cols=98  Identities=15%  Similarity=0.131  Sum_probs=70.0

Q ss_pred             CCCcc-cccccccccccCCcEEEEEEeCCChhhHHH-HHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            3 VIGQE-DYNRLRPLSYRGADVFVLAFSLVSRASYEN-VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         3 t~G~e-~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~-~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      .|||. +........++.+|+++.|+|+.+|.+... .+..|+       .++|+++|+||+|+....            
T Consensus         6 ~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~------------   66 (282)
T 1puj_A            6 FPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAA------------   66 (282)
T ss_dssp             ---CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHH------------
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHH------------
Confidence            46765 333444557889999999999999987753 113332       479999999999997532            


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      ..+....+.+..+. +++++||+++.|+.+++..+.+.+.
T Consensus        67 ~~~~~~~~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           67 VTQQWKEHFENQGI-RSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             HHHHHHHHHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC-cEEEEECCCcccHHHHHHHHHHHHH
Confidence            22334455555566 8999999999999999998877764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.94  E-value=5.7e-11  Score=88.34  Aligned_cols=109  Identities=8%  Similarity=0.020  Sum_probs=60.8

Q ss_pred             CCCCCc-------cccccccc-------ccccCC-------------cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCC
Q 031970            1 MNVIGQ-------EDYNRLRP-------LSYRGA-------------DVFVLAFSLVSRASYENVLKKWIPELQHYSPGV   53 (150)
Q Consensus         1 wDt~G~-------e~~~~l~~-------~~~~~a-------------d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~   53 (150)
                      |||+|+       +.|..+..       .|++++             ++++++.+++.. +++.....++   .....+.
T Consensus        81 ~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l---~~l~~~~  156 (301)
T 2qnr_A           81 VDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFM---KAIHNKV  156 (301)
T ss_dssp             EEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHH---HHHTTTS
T ss_pred             hhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHH---HHHHhcC
Confidence            899998       66666654       444433             335555554321 2333211233   3333468


Q ss_pred             CEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           54 PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        54 piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      |+++|+||.|+.+....        .+..+++..+++.+++ +++++||+++ +++++|..+++.+....
T Consensus       157 ~iilV~~K~Dl~~~~e~--------~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~~~~  216 (301)
T 2qnr_A          157 NIVPVIAKADTLTLKER--------ERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLKASI  216 (301)
T ss_dssp             CEEEEECCGGGSCHHHH--------HHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHHTTC
T ss_pred             CEEEEEEeCCCCCHHHH--------HHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhhcCC
Confidence            99999999998754321        1134677888899997 9999999999 99999999999886543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.93  E-value=5.6e-10  Score=84.67  Aligned_cols=101  Identities=13%  Similarity=0.090  Sum_probs=65.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||...   .....+..+|++++|+|.......+.+ .       ....+.|+++|+||+|+.+....        ..
T Consensus       177 iDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l-~-------~~~~~~p~ivVlNK~Dl~~~~~~--------~~  237 (355)
T 3p32_A          177 IETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI-K-------KGVLELADIVVVNKADGEHHKEA--------RL  237 (355)
T ss_dssp             EEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC-C-------TTSGGGCSEEEEECCCGGGHHHH--------HH
T ss_pred             EeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH-H-------HhHhhcCCEEEEECCCCcChhHH--------HH
Confidence            69999432   112235789999999998876554332 1       11124699999999998654221        00


Q ss_pred             CHHHHHHHHHHc-------CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           81 TTAQGEELRKQI-------GASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        81 ~~~~~~~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      ...+........       + .+++++||++|.|++++++.+.+.+..
T Consensus       238 ~~~~l~~~l~~~~~~~~~~~-~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          238 AARELSAAIRLIYPREALWR-PPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHHHSTTCCSCC-CCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccccCCC-CceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            111222222212       3 389999999999999999999988754

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.89  E-value=8e-09  Score=82.51  Aligned_cols=62  Identities=13%  Similarity=0.101  Sum_probs=50.8

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      ||||+.+|..-....++-+|++|+|+|+......+-. .-|. ...+.  ++|++++.||.|....
T Consensus       106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~-~a~~~--~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMD-VCRMR--ATPVMTFVNKMDREAL  167 (548)
T ss_dssp             CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHH-HHHHT--TCCEEEEEECTTSCCC
T ss_pred             eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHH-HHHHh--CCceEEEEecccchhc
Confidence            9999999999999999999999999999987766654 4453 33332  7999999999997543

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.78  E-value=2.1e-09  Score=89.73  Aligned_cols=62  Identities=15%  Similarity=0.134  Sum_probs=53.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE   66 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~   66 (150)
                      |||||+++|...+..+++.+|++|+|+|+++..+++.. ..|.....   .++|+++|+||+|+..
T Consensus       103 iDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~---~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A          103 IDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG---ERIKPVVVINKVDRAL  164 (842)
T ss_dssp             ECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCEEEEEEECHHHHH
T ss_pred             EECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCeEEEEECCCcch
Confidence            89999999999999999999999999999999888875 55654333   3689999999999874

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.78  E-value=3.6e-10  Score=85.60  Aligned_cols=104  Identities=17%  Similarity=0.091  Sum_probs=64.5

Q ss_pred             CCCCCcc-------------cccccccccccCCcE-EEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970            1 MNVIGQE-------------DYNRLRPLSYRGADV-FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE   66 (150)
Q Consensus         1 wDt~G~e-------------~~~~l~~~~~~~ad~-~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~   66 (150)
                      |||||..             .+..+...|++.++. +++|.|.+......+. ..+++.+..  .+.|+++|+||+|+..
T Consensus       135 vDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~i~~~~~~--~~~~~i~V~NK~Dl~~  211 (353)
T 2x2e_A          135 VDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LKVAKEVDP--QGQRTIGVITKLDLMD  211 (353)
T ss_dssp             EECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HHHHHHHCT--TCTTEEEEEECGGGSC
T ss_pred             EECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HHHHHHhCc--CCCceEEEeccccccC
Confidence            8999963             455566778877664 4455666543333332 234544443  3689999999999975


Q ss_pred             ccccccCCCCCCccCHHHHHH--HHHHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031970           67 DKHYLADHPGLVPVTTAQGEE--LRKQIGASYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        67 ~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                      ....          .......  +....++.+++++||+++.|++++++.+.+
T Consensus       212 ~~~~----------~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          212 EGTD----------ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             TTCC----------CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             cchh----------HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            4321          1111110  000123346788999999999999998876

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=98.77  E-value=3.8e-09  Score=76.79  Aligned_cols=66  Identities=14%  Similarity=0.081  Sum_probs=48.9

Q ss_pred             CCCCCccccccccccccc---------CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCcccc
Q 031970            1 MNVIGQEDYNRLRPLSYR---------GADVFVLAFSLVSRASYENVLKKWIPELQHYSP---GVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~---------~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~D~~~~   67 (150)
                      |||||+++|..+.+.+++         ++|++++|+|++... +......|++.+.....   ..|+++|+||+|+...
T Consensus        89 iDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A           89 IDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             EECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred             EECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence            899999999887766665         789999999998754 32221466766665432   2499999999998643

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.76  E-value=3e-09  Score=82.38  Aligned_cols=94  Identities=7%  Similarity=0.015  Sum_probs=49.2

Q ss_pred             ccccccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCH--HHHHHHH
Q 031970           13 RPLSYRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT--AQGEELR   89 (150)
Q Consensus        13 ~~~~~~~ad~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~--~~~~~~~   89 (150)
                      .+.++.++++.+++|+.... .++...-..|+..+.   .++|+|+|+||+|+.....          +..  ..+...+
T Consensus       130 aRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~e----------v~~~k~~i~~~~  196 (418)
T 2qag_C          130 NRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEE----------CQQFKKQIMKEI  196 (418)
T ss_dssp             CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHH----------HHHHHHHHHHHH
T ss_pred             HHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHH----------HHHHHHHHHHHH
Confidence            35567777755555555432 233333125666665   3799999999999875432          122  5677788


Q ss_pred             HHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           90 KQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        90 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      ...++ +++++||+++.++.++|..+...+.
T Consensus       197 ~~~~i-~~~~~sa~~~~~v~~~~~~l~~~iP  226 (418)
T 2qag_C          197 QEHKI-KIYEFPETDDEEENKLVKKIKDRLP  226 (418)
T ss_dssp             HHHTC-CCCCCC-----------------CC
T ss_pred             HHcCC-eEEeCCCCCCcCHHHHHHHHHhhCC
Confidence            88887 8999999999999999888877653

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.73  E-value=4e-09  Score=81.21  Aligned_cols=49  Identities=14%  Similarity=0.177  Sum_probs=33.3

Q ss_pred             CCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHH
Q 031970           52 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD  113 (150)
Q Consensus        52 ~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  113 (150)
                      .+|+++|+||+|+.. ..           ....+.......+. +++++||+.+.++.++++
T Consensus       214 ~kP~i~v~NK~D~~~-~~-----------~l~~l~~~~~~~~~-~vv~iSA~~e~~l~~L~~  262 (397)
T 1wxq_A          214 NKPMVIAANKADAAS-DE-----------QIKRLVREEEKRGY-IVIPTSAAAELTLRKAAK  262 (397)
T ss_dssp             HSCEEEEEECGGGSC-HH-----------HHHHHHHHHHHTTC-EEEEECHHHHHHHHSCSS
T ss_pred             CCCEEEEEeCccccc-hH-----------HHHHHHHHHhhcCC-cEEEEeccchhhHHHHHh
Confidence            389999999999762 11           22333333333354 899999999988876544

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.71  E-value=9.4e-09  Score=83.47  Aligned_cols=118  Identities=12%  Similarity=0.084  Sum_probs=78.3

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc---------cc
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY---------LA   72 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~---------~~   72 (150)
                      |||||.+|..-....++-+|++|+|+|+......+-. .-|. ...+.  ++|+|++.||.|.......         +.
T Consensus        73 DTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~-~a~~~--~lp~i~~INKmDr~~a~~~~~~~~i~~~l~  148 (638)
T 3j25_A           73 DTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTR-ILFH-ALRKM--GIPTIFFINKIDQNGIDLSTVYQDIKEKLS  148 (638)
T ss_dssp             ECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHH-HHHH-HHHHH--TCSCEECCEECCSSSCCSHHHHHHHHHTTC
T ss_pred             ECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHH-HHHHc--CCCeEEEEeccccccCCHHHHHHHHHHHhC
Confidence            9999999999999999999999999999986655443 3343 33333  6899999999997543211         00


Q ss_pred             CC------CC------CCcc-CHH-----------------------------HHHHHHHHcCCcEEEEeccCCCCCHHH
Q 031970           73 DH------PG------LVPV-TTA-----------------------------QGEELRKQIGASYYIECSSKTQQNVKA  110 (150)
Q Consensus        73 ~~------~~------~~~v-~~~-----------------------------~~~~~~~~~~~~~~~~~Sa~~~~~i~~  110 (150)
                      ..      ..      .... ..+                             ....-.....+.|++..||+++.||..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~  228 (638)
T 3j25_A          149 AEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDN  228 (638)
T ss_dssp             CCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHH
T ss_pred             CCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchh
Confidence            00      00      0000 000                             001111222345888999999999999


Q ss_pred             HHHHHHHHHhCCC
Q 031970          111 VFDAAIKVVIKPP  123 (150)
Q Consensus       111 ~~~~l~~~~~~~~  123 (150)
                      +++.+.+.+..+.
T Consensus       229 LLd~i~~~~p~p~  241 (638)
T 3j25_A          229 LIEVITNKFYSST  241 (638)
T ss_dssp             HHHHHHHSCCCSG
T ss_pred             HhhhhhccccCcc
Confidence            9999999887653

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.65  E-value=2e-08  Score=75.79  Aligned_cols=101  Identities=16%  Similarity=0.179  Sum_probs=61.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||||...+...   ....+|++++|+|++.....+.+ ..   ..    .+.|.++|+||+|+......        ..
T Consensus       154 iDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l-~~---~~----~~~p~ivv~NK~Dl~~~~~~--------~~  214 (341)
T 2p67_A          154 VETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGI-KK---GL----MEVADLIVINKDDGDNHTNV--------AI  214 (341)
T ss_dssp             EEEECCTTHHHH---HHTTCSEEEEEECC------CCC-CH---HH----HHHCSEEEECCCCTTCHHHH--------HH
T ss_pred             EeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHH-HH---hh----hcccCEEEEECCCCCChHHH--------HH
Confidence            699996654332   46899999999999765432211 11   11    14689999999998653210        00


Q ss_pred             CHHHHHHHHHHcC------CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           81 TTAQGEELRKQIG------ASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        81 ~~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      ...++......++      ..+++++||+++.|++++++.+...+.
T Consensus       215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            1112222222222      247899999999999999999988664

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.62  E-value=3.9e-08  Score=71.64  Aligned_cols=66  Identities=12%  Similarity=0.080  Sum_probs=46.4

Q ss_pred             CCCCCcccccccccc---------cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-C--CCEEEEeeCCCcccc
Q 031970            1 MNVIGQEDYNRLRPL---------SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-G--VPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G~e~~~~l~~~---------~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~D~~~~   67 (150)
                      |||||++++..+...         ..+.+|++|+|+|++.. ++......|+..+..... +  .|+++|+||+|+...
T Consensus        92 iDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~  169 (270)
T 1h65_A           92 IDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP  169 (270)
T ss_dssp             EECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred             EECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence            899999988755432         23479999999998763 232221467777765433 2  699999999998654

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.56  E-value=3.3e-07  Score=75.26  Aligned_cols=61  Identities=23%  Similarity=0.256  Sum_probs=50.0

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE   66 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~   66 (150)
                      |||||-+|..-....++-+|++|+|+|+......+-. .-|......   ++|++++.||.|...
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~~---~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANKY---GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHH---TCCEEEEEECSSSTT
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHHc---CCCeEEEEccccccC
Confidence            9999999999889999999999999999987666553 344443333   799999999999753

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.55  E-value=1.1e-09  Score=77.31  Aligned_cols=59  Identities=22%  Similarity=0.163  Sum_probs=45.5

Q ss_pred             CCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           52 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        52 ~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      +.|.++|+||+|+.+...          +...++..+++.++ ..+++++||+++.|++++|+.+.+.+.
T Consensus       164 ~~~~iiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          164 KTADLIVINKIDLADAVG----------ADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             TTCSEEEEECGGGHHHHT----------CCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hcCCEEEEeccccCchhH----------HHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence            367899999999875432          14566666666542 238999999999999999999988764

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.53  E-value=3.2e-08  Score=72.12  Aligned_cols=93  Identities=15%  Similarity=0.091  Sum_probs=63.2

Q ss_pred             CCccccc-ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCH
Q 031970            4 IGQEDYN-RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT   82 (150)
Q Consensus         4 ~G~e~~~-~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~   82 (150)
                      |||.... ......+..+|+++.|+|+.+|.+....  .    +. .. ++|.++|.||+|+.+..            ..
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~----l~-ll-~k~~iivlNK~DL~~~~------------~~   64 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--G----VD-FS-RKETIILLNKVDIADEK------------TT   64 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--T----SC-CT-TSEEEEEEECGGGSCHH------------HH
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--H----HH-hc-CCCcEEEEECccCCCHH------------HH
Confidence            5665422 2344578899999999999998877532  1    11 12 68999999999997632            22


Q ss_pred             HHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHH
Q 031970           83 AQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                      +....+.+..+. ++ .+||+++.|+++++..+...
T Consensus        65 ~~~~~~~~~~g~-~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           65 KKWVEFFKKQGK-RV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             HHHHHHHHHTTC-CE-EECCTTSCHHHHHHHHCCCT
T ss_pred             HHHHHHHHHcCC-eE-EEECCCCcCHHHHHHHHHHh
Confidence            344455556676 67 99999999999998876543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.53  E-value=2.3e-07  Score=70.25  Aligned_cols=97  Identities=13%  Similarity=0.107  Sum_probs=57.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      +||+|...-   .......+|++++|+|++.+...+.+ ..   .+    -+.|.++|+||+|+.+...           
T Consensus       172 iDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i-~~---~i----l~~~~ivVlNK~Dl~~~~~-----------  229 (349)
T 2www_A          172 IETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGI-KR---GI----IEMADLVAVTKSDGDLIVP-----------  229 (349)
T ss_dssp             EECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH-----------
T ss_pred             EECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHh-HH---HH----HhcCCEEEEeeecCCCchh-----------
Confidence            588885311   12245689999999999876443322 11   12    1468899999999864321           


Q ss_pred             CHHHHHHHHHH----------cCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           81 TTAQGEELRKQ----------IGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        81 ~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      .......+...          +. .+++++||+++.|++++++.|.+.+.
T Consensus       230 ~~~~~~~l~~~l~~~~~~a~~~~-~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          230 ARRIQAEYVSALKLLRKRSQVWK-PKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHHHHHHHTTCC-----CC-CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCccccCCC-ceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            11112222211          12 37899999999999999999988763

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.51  E-value=6e-08  Score=72.20  Aligned_cols=93  Identities=25%  Similarity=0.241  Sum_probs=65.6

Q ss_pred             cccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccc--cccCCCCCCccCHHHH
Q 031970            8 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH--YLADHPGLVPVTTAQG   85 (150)
Q Consensus         8 ~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~--~~~~~~~~~~v~~~~~   85 (150)
                      +-+.+.+....++|.+++|+|+.+|......+++++.....  .++|+++|.||+|+.+...  .          .....
T Consensus        75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~~~~----------~~~~~  142 (307)
T 1t9h_A           75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDTED----------TIQAY  142 (307)
T ss_dssp             CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHHH----------HHHHH
T ss_pred             hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhhhHH----------HHHHH
Confidence            34456666789999999999999876444444777654443  3789999999999986421  0          12344


Q ss_pred             HHHHHHcCCcEEEEeccCCCCCHHHHHH
Q 031970           86 EELRKQIGASYYIECSSKTQQNVKAVFD  113 (150)
Q Consensus        86 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  113 (150)
                      ..+.+..+. +++.+||.++.|+++++.
T Consensus       143 ~~~y~~~g~-~v~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          143 AEDYRNIGY-DVYLTSSKDQDSLADIIP  169 (307)
T ss_dssp             HHHHHHHTC-CEEECCHHHHTTCTTTGG
T ss_pred             HHHHHhCCC-eEEEEecCCCCCHHHHHh
Confidence            445555676 889999999988877665

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.47  E-value=3e-08  Score=79.29  Aligned_cols=64  Identities=16%  Similarity=0.145  Sum_probs=49.8

Q ss_pred             CCCCCccc-----------ccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970            1 MNVIGQED-----------YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G~e~-----------~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      |||||+..           |..+...++..+|++|+|+|+++....... ..|+..+...  +.|+++|+||+|+...
T Consensus       159 IDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          159 IDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRGH--EDKIRVVLNKADMVET  233 (550)
T ss_dssp             EECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTTC--GGGEEEEEECGGGSCH
T ss_pred             EECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHhc--CCCEEEEEECCCccCH
Confidence            79999875           556666788999999999999886444444 5677666543  5899999999998754

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.42  E-value=3.5e-06  Score=64.02  Aligned_cols=57  Identities=11%  Similarity=0.128  Sum_probs=40.1

Q ss_pred             CCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCC----------------------CCCHH
Q 031970           52 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT----------------------QQNVK  109 (150)
Q Consensus        52 ~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~----------------------~~~i~  109 (150)
                      .+|+++++|+.|..-..+          .....+..++...+. +++++||+.                      ..|++
T Consensus       199 ~KPvi~v~N~~e~~~~~n----------~~~~~v~~~~~~~~~-~~i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~  267 (363)
T 1jal_A          199 LKPTMYIANVNEDGFENN----------PYLDRVREIAAKEGA-VVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLN  267 (363)
T ss_dssp             TSCEEEEEECCTTCSSSC----------HHHHHHHHHHHHTTC-EEEEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTH
T ss_pred             CCcEEEEEeccccccccc----------HHHHHHHHHHHHcCC-CEEEechHHHHHHHhcCHHHHHHHHHHhCcccccHH
Confidence            499999999998542111          255677788888886 899999763                      35677


Q ss_pred             HHHHHHHHHH
Q 031970          110 AVFDAAIKVV  119 (150)
Q Consensus       110 ~~~~~l~~~~  119 (150)
                      .++....+.+
T Consensus       268 ~li~~~~~~L  277 (363)
T 1jal_A          268 RVIRAGYALL  277 (363)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            7777655544

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.35  E-value=5.1e-08  Score=80.33  Aligned_cols=104  Identities=17%  Similarity=0.086  Sum_probs=68.2

Q ss_pred             CCCCCccc-------------ccccccccc-cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970            1 MNVIGQED-------------YNRLRPLSY-RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE   66 (150)
Q Consensus         1 wDt~G~e~-------------~~~l~~~~~-~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~   66 (150)
                      +||||..+             +..+...|+ ..+|++++|.|++...+..+. ..++..+...  +.|+++|.||+|+..
T Consensus       155 VDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l~ll~~L~~~--g~pvIlVlNKiDlv~  231 (772)
T 3zvr_A          155 VDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LKIAKEVDPQ--GQRTIGVITKLDLMD  231 (772)
T ss_dssp             EECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-HHHHHHHCTT--CSSEEEEEECTTSSC
T ss_pred             EECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-HHHHHHHHhc--CCCEEEEEeCcccCC
Confidence            49999543             233444455 478999999999976544443 2455555543  689999999999976


Q ss_pred             ccccccCCCCCCccCHHHHHH--HHHHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031970           67 DKHYLADHPGLVPVTTAQGEE--LRKQIGASYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        67 ~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                      ....          .......  +....++.+++.+||+++.|++++++.+.+
T Consensus       232 ~~~~----------~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          232 EGTD----------ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             TTCC----------SHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             cchh----------hHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence            4321          1111110  000123446788999999999999999887

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.24  E-value=3.7e-06  Score=64.07  Aligned_cols=52  Identities=12%  Similarity=0.064  Sum_probs=34.8

Q ss_pred             CCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHH
Q 031970           52 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV  111 (150)
Q Consensus        52 ~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  111 (150)
                      .+|+++++||.|..-...       ..+.....+..+++..+. +++++||+...++.++
T Consensus       201 ~KPvi~v~N~~e~d~~~~-------~~n~~~~~v~~~a~~~g~-~vv~iSAk~E~el~eL  252 (368)
T 2dby_A          201 AKPVIYVANVAEEDLPDG-------RGNPQVEAVRRKALEEGA-EVVVVSARLEAELAEL  252 (368)
T ss_dssp             GSCEEEEEECCGGGTTTC-------TTCHHHHHHHHHHHHHTC-EEEEECHHHHHHHHTS
T ss_pred             cCCeEEeccccHHhhccc-------chhhHHHHHHHHHHHcCC-eEEEeechhHHHHHHh
Confidence            379999999998421100       001256777888888886 9999999874444433

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.06  E-value=2.8e-05  Score=58.99  Aligned_cols=87  Identities=20%  Similarity=0.243  Sum_probs=57.8

Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCc
Q 031970           16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS   95 (150)
Q Consensus        16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~   95 (150)
                      ...++|.+++|... +|......++.++-.....  ++|+++|.||+|+.+....         -..+.........|. 
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~~---------~~~~~~~~~y~~~G~-  193 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEGM---------DFVNEQMDIYRNIGY-  193 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHHH---------HHHHHHHHHHHTTTC-
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchhH---------HHHHHHHHHHHhCCC-
Confidence            36789999988665 4553333346776544332  6889999999999764210         001233344455676 


Q ss_pred             EEEEeccCCCCCHHHHHHHH
Q 031970           96 YYIECSSKTQQNVKAVFDAA  115 (150)
Q Consensus        96 ~~~~~Sa~~~~~i~~~~~~l  115 (150)
                      +++.+||.++.|++++...+
T Consensus       194 ~v~~~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          194 RVLMVSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             CEEECBTTTTBTHHHHHHHH
T ss_pred             cEEEEecCCCcCHHHHHHhc
Confidence            78999999999999887643

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.99  E-value=1e-05  Score=60.82  Aligned_cols=99  Identities=11%  Similarity=0.134  Sum_probs=58.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      +||+|...-.   ......+|.+++|+|.......+.+ ..   .+.    +.|.++|.||+|+......          
T Consensus       153 iDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i-~~---~i~----~~~~ivvlNK~Dl~~~~~~----------  211 (337)
T 2qm8_A          153 VETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGI-KK---GIF----ELADMIAVNKADDGDGERR----------  211 (337)
T ss_dssp             EEECSSSSCH---HHHHTTSSEEEEEECSCC------C-CT---THH----HHCSEEEEECCSTTCCHHH----------
T ss_pred             EECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHH-HH---HHh----ccccEEEEEchhccCchhH----------
Confidence            4888864311   1234689999999998754332211 11   111    2466788899997532210          


Q ss_pred             CHHHHHHHHHHc---C------CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           81 TTAQGEELRKQI---G------ASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        81 ~~~~~~~~~~~~---~------~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      ...+.+.+....   +      ..+++.+||+++.|++++++.+.+...
T Consensus       212 s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          212 ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            222233333221   1      247889999999999999999988654

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=96.52  E-value=0.011  Score=45.05  Aligned_cols=110  Identities=9%  Similarity=0.059  Sum_probs=59.7

Q ss_pred             CCCCCcccccc----ccc---ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccC
Q 031970            1 MNVIGQEDYNR----LRP---LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD   73 (150)
Q Consensus         1 wDt~G~e~~~~----l~~---~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~   73 (150)
                      .||||.-+-..    +..   ..++.||++++|.|.++|..-.+.+..-+..+.......|.+++.||.|.......  .
T Consensus       124 ~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~--~  201 (376)
T 4a9a_A          124 LDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISIT--N  201 (376)
T ss_dssp             EECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEE--E
T ss_pred             EeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhh--c
Confidence            38888643211    111   24678999999999999864433322223222222246789999999997543211  1


Q ss_pred             CCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHH
Q 031970           74 HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD  113 (150)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  113 (150)
                      .........++...+...+.+ ..-++-...+...+++.+
T Consensus       202 ~~~~~~l~~eeik~il~~~~l-t~kpv~~~~nv~eddl~d  240 (376)
T 4a9a_A          202 TVPLTHLGNDEIRAVMSEYRI-NSAEIAFRCDATVDDLID  240 (376)
T ss_dssp             SSCCSSCCHHHHHHHHHHTTC-CSEEEEECSCCCHHHHHH
T ss_pred             chhhhhccHHHHHHHHHHhcc-cCCCeeecccCCHHHHHH
Confidence            112223456666667666654 222233333445555554

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.07  E-value=0.0016  Score=51.55  Aligned_cols=97  Identities=13%  Similarity=0.049  Sum_probs=57.7

Q ss_pred             CCCCCcccccc-cccc---c--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeeCCCcccccccccC
Q 031970            1 MNVIGQEDYNR-LRPL---S--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLREDKHYLAD   73 (150)
Q Consensus         1 wDt~G~e~~~~-l~~~---~--~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~D~~~~~~~~~~   73 (150)
                      +||||...... +...   .  +..+|.+++|+|++......    .....+..   ..|+ .+|.||.|......    
T Consensus       189 IDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~----~~a~~~~~---~~~i~gvVlNK~D~~~~~g----  257 (504)
T 2j37_W          189 VDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE----AQAKAFKD---KVDVASVIVTKLDGHAKGG----  257 (504)
T ss_dssp             EEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH----HHHHHHHH---HHCCCCEEEECTTSCCCCT----
T ss_pred             EeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH----HHHHHHHh---hcCceEEEEeCCccccchH----
Confidence            59999764221 1110   1  22789999999998764422    22333333   2575 89999999764321    


Q ss_pred             CCCCCccCHHHHHHHHHHcCC-----------------cEEEEeccCCCCC-HHHHHHHHHHH
Q 031970           74 HPGLVPVTTAQGEELRKQIGA-----------------SYYIECSSKTQQN-VKAVFDAAIKV  118 (150)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~-i~~~~~~l~~~  118 (150)
                                ........++.                 .+...+|+..|.| +.++++.+.+.
T Consensus       258 ----------~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          258 ----------GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             ----------HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ----------HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence                      11122333443                 1223479999999 99999888765

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=95.44  E-value=0.0023  Score=49.16  Aligned_cols=34  Identities=9%  Similarity=-0.014  Sum_probs=19.2

Q ss_pred             CCCCCcccccc----c---ccccccCCcEEEEEEeCCChhh
Q 031970            1 MNVIGQEDYNR----L---RPLSYRGADVFVLAFSLVSRAS   34 (150)
Q Consensus         1 wDt~G~e~~~~----l---~~~~~~~ad~~i~v~d~~~~~s   34 (150)
                      |||||+.++.+    +   ...+++++|++++|+|+++..+
T Consensus        91 vDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A           91 VDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             EECCC-----------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             EECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            89999988654    2   2457889999999999986443

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=94.64  E-value=0.15  Score=38.97  Aligned_cols=57  Identities=9%  Similarity=0.035  Sum_probs=40.3

Q ss_pred             CCEEEEeeCCCccc--ccccccCCCCCCccCHHHHHHHHHHcC-CcEEEEeccCC---------------------CCCH
Q 031970           53 VPVVLVGTKLDLRE--DKHYLADHPGLVPVTTAQGEELRKQIG-ASYYIECSSKT---------------------QQNV  108 (150)
Q Consensus        53 ~piilv~nK~D~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~---------------------~~~i  108 (150)
                      .|+++++|+.|..-  ..+.          ....+..++...+ ..+++++||+.                     ..|+
T Consensus       225 kp~~y~~Nv~e~~~~~~~~~----------~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl  294 (392)
T 1ni3_A          225 KPVIYLVNMSERDFLRQKNK----------YLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSML  294 (392)
T ss_dssp             SCEEEEEECCHHHHTTTCCS----------SHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSH
T ss_pred             CceEEEEEecchhhcccchH----------HHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccH
Confidence            89999999998421  1111          4566777777665 13789999886                     5788


Q ss_pred             HHHHHHHHHHH
Q 031970          109 KAVFDAAIKVV  119 (150)
Q Consensus       109 ~~~~~~l~~~~  119 (150)
                      ..++....+.+
T Consensus       295 ~~~i~~~~~~L  305 (392)
T 1ni3_A          295 PKIIVTGYNAL  305 (392)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            88888886655

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=92.30  E-value=0.12  Score=34.94  Aligned_cols=59  Identities=7%  Similarity=-0.036  Sum_probs=39.8

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeeCCCcc
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLR   65 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~D~~   65 (150)
                      |||+.-  .......+..+|.+|++...+...  ..+ ...++.+.+..   ++.++.+|.|+.|..
T Consensus        82 D~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~~vv~N~~~~~  143 (206)
T 4dzz_A           82 DGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSA-AGSVVTVLEAQAYSRKVEARFLITRKIEM  143 (206)
T ss_dssp             ECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHH-HHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred             ECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHH-HHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence            666544  233345667799999999987654  454 56666665542   357889999999854

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=92.17  E-value=0.16  Score=37.22  Aligned_cols=85  Identities=12%  Similarity=0.059  Sum_probs=50.6

Q ss_pred             CCCCccc--ccc-ccc-----ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCccccccccc
Q 031970            2 NVIGQED--YNR-LRP-----LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         2 Dt~G~e~--~~~-l~~-----~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~   72 (150)
                      ||||...  ... +..     .....+|.+++|.|.+....   . -.....+..   ..| ..+|.||.|...      
T Consensus       187 DTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~-~~~~~~~~~---~~~i~gvVlnk~D~~~------  253 (297)
T 1j8m_F          187 DTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---A-YDLASKFNQ---ASKIGTIIITKMDGTA------  253 (297)
T ss_dssp             ECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---H-HHHHHHHHH---TCTTEEEEEECGGGCT------
T ss_pred             eCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---H-HHHHHHHHh---hCCCCEEEEeCCCCCc------
Confidence            8888766  211 111     12447899999999875422   2 122333333   356 678999999653      


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHH
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKA  110 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  110 (150)
                              ....+..+....+. |+..++  .|+++++
T Consensus       254 --------~~g~~~~~~~~~~~-pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 --------KGGGALSAVAATGA-TIKFIG--TGEKIDE  280 (297)
T ss_dssp             --------THHHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred             --------chHHHHHHHHHHCc-CEEEEe--CCCChhh
Confidence                    23445566777776 777766  4666644

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=91.94  E-value=0.15  Score=39.62  Aligned_cols=68  Identities=12%  Similarity=-0.043  Sum_probs=41.9

Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031970           18 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY   97 (150)
Q Consensus        18 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   97 (150)
                      ..+|.+++|.|++.......    ....+.+.  -.+..+|.||.|...              ....+.......+. |+
T Consensus       211 ~~pd~vlLVvDA~~gq~a~~----~a~~f~~~--~~i~gVIlTKlD~~~--------------~gG~~ls~~~~~g~-PI  269 (443)
T 3dm5_A          211 IHPHEVILVIDGTIGQQAYN----QALAFKEA--TPIGSIIVTKLDGSA--------------KGGGALSAVAATGA-PI  269 (443)
T ss_dssp             HCCSEEEEEEEGGGGGGHHH----HHHHHHHS--CTTEEEEEECCSSCS--------------SHHHHHHHHHTTCC-CE
T ss_pred             hcCceEEEEEeCCCchhHHH----HHHHHHhh--CCCeEEEEECCCCcc--------------cccHHHHHHHHHCC-CE
Confidence            35789999999987544322    23344432  134568999999754              22344455556776 77


Q ss_pred             EEeccCCCCCH
Q 031970           98 IECSSKTQQNV  108 (150)
Q Consensus        98 ~~~Sa~~~~~i  108 (150)
                      .+++.  |+++
T Consensus       270 ~fig~--Ge~v  278 (443)
T 3dm5_A          270 KFIGT--GEKI  278 (443)
T ss_dssp             EEEEC--SSST
T ss_pred             EEEEc--CCCh
Confidence            77775  5444

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=90.86  E-value=0.087  Score=40.81  Aligned_cols=58  Identities=14%  Similarity=0.131  Sum_probs=34.4

Q ss_pred             CCCCccccc-----ccc-cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCC-C-EEEEeeCCCccc
Q 031970            2 NVIGQEDYN-----RLR-PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGV-P-VVLVGTKLDLRE   66 (150)
Q Consensus         2 Dt~G~e~~~-----~l~-~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~-p-iilv~nK~D~~~   66 (150)
                      ||||.....     .+. -..+..+|.+++|.|++....   . ......+.   +.. | ..+|.||.|...
T Consensus       187 DT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~-~~~~~~~~---~~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          187 DTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---A-GIQAKAFK---EAVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             ECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---H-HHHHHHHH---TTSCSCEEEEEECSSSCS
T ss_pred             cCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---H-HHHHHHHh---hcccCCeEEEEeCCCCcc
Confidence            899865421     110 012236899999999876542   2 12233333   235 6 789999999753

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=88.23  E-value=1.8  Score=29.58  Aligned_cols=49  Identities=14%  Similarity=0.076  Sum_probs=34.6

Q ss_pred             cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031970           14 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR   65 (150)
Q Consensus        14 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~   65 (150)
                      ...+..+|.+|++...+ ..+...+ ...++.+.+.. +.++.+|.|+.+..
T Consensus        85 ~~~l~~aD~viiv~~~~-~~~~~~~-~~~~~~l~~~~-~~~~~vv~N~~~~~  133 (209)
T 3cwq_A           85 EALADGCDLLVIPSTPD-ALALDAL-MLTIETLQKLG-NNRFRILLTIIPPY  133 (209)
T ss_dssp             HHHHHTSSEEEEEECSS-HHHHHHH-HHHHHHHHHTC-SSSEEEEECSBCCT
T ss_pred             HHHHHHCCEEEEEecCC-chhHHHH-HHHHHHHHhcc-CCCEEEEEEecCCc
Confidence            44677899999998875 4455555 56666666532 56788999999854

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=86.85  E-value=0.59  Score=36.15  Aligned_cols=41  Identities=10%  Similarity=0.042  Sum_probs=26.2

Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970           22 VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus        22 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      +++++.|....-+..++  .+++.+.   .++|+|+|.||+|..+.
T Consensus       151 ~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~  191 (427)
T 2qag_B          151 CLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISK  191 (427)
T ss_dssp             EEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred             EEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccch
Confidence            46667777655544443  4444444   47899999999998754

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=85.41  E-value=1.3  Score=31.25  Aligned_cols=48  Identities=10%  Similarity=0.151  Sum_probs=36.1

Q ss_pred             cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCC
Q 031970           14 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD   63 (150)
Q Consensus        14 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D   63 (150)
                      ...+..||.+|++...+ ..+...+ ....+.+.....+.++.+|.|+.+
T Consensus       161 ~~~l~~aD~vivv~~~~-~~s~~~~-~~~~~~l~~~~~~~~~~vv~N~~~  208 (267)
T 3k9g_A          161 KNALLCSDYVIIPMTAE-KWAVESL-DLFNFFVRKLNLFLPIFLIITRFK  208 (267)
T ss_dssp             HHHHTTCSEEEEEEESC-TTHHHHH-HHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred             HHHHHHCCeEEEEeCCC-hHHHHHH-HHHHHHHHHHhccCCEEEEEeccc
Confidence            34566799999999985 4566665 677777777666678889999984

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=83.04  E-value=3  Score=32.21  Aligned_cols=67  Identities=10%  Similarity=0.006  Sum_probs=42.8

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEE
Q 031970           19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI   98 (150)
Q Consensus        19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   98 (150)
                      .++.+++|.|.+.......    ....+.+.  -.+..+|.||.|...              ....+.......+. |+.
T Consensus       211 ~pd~vlLVlDa~~gq~a~~----~a~~f~~~--~~~~gVIlTKlD~~a--------------~~G~als~~~~~g~-Pi~  269 (433)
T 3kl4_A          211 KPDDVILVIDASIGQKAYD----LASRFHQA--SPIGSVIITKMDGTA--------------KGGGALSAVVATGA-TIK  269 (433)
T ss_dssp             CCSEEEEEEEGGGGGGGHH----HHHHHHHH--CSSEEEEEECGGGCS--------------CHHHHHHHHHHHTC-EEE
T ss_pred             CCcceEEEEeCccchHHHH----HHHHHhcc--cCCcEEEEecccccc--------------cchHHHHHHHHHCC-CEE
Confidence            4689999999987543332    33334332  135789999999653              33445555666776 887


Q ss_pred             EeccCCCCCH
Q 031970           99 ECSSKTQQNV  108 (150)
Q Consensus        99 ~~Sa~~~~~i  108 (150)
                      +++.  |+++
T Consensus       270 fig~--Ge~v  277 (433)
T 3kl4_A          270 FIGT--GEKI  277 (433)
T ss_dssp             EEEC--CSSS
T ss_pred             EEEC--CCCh
Confidence            7776  5554

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=82.37  E-value=0.033  Score=42.18  Aligned_cols=75  Identities=8%  Similarity=-0.003  Sum_probs=43.5

Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEE
Q 031970           18 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY   97 (150)
Q Consensus        18 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~   97 (150)
                      +..+.++++++......+..+ .. +..+.  ..+.|++++.||.|..+...           .......+.+..+. .+
T Consensus       244 ~~i~~~~~~l~~~~~~~~g~l-~~-l~~l~--~~~~~~~~v~~k~d~~~~~~-----------~~~~~~~~~~~~g~-~l  307 (369)
T 3ec1_A          244 REIHPRVYQLNEGQTLFFGGL-AR-LDYIK--GGRRSFVCYMANELTVHRTK-----------LEKADSLYANQLGE-LL  307 (369)
T ss_dssp             SCCCCEEEEECTTEEEEETTT-EE-EEEEE--SSSEEEEEEECTTSCEEEEE-----------GGGHHHHHHHHBTT-TB
T ss_pred             cccCceEEEEcCCceEEECCE-EE-EEEcc--CCCceEEEEecCCccccccc-----------HHHHHHHHHHhcCC-cc
Confidence            578899999988533111111 01 11111  13689999999999876543           33445556666665 55


Q ss_pred             EEeccCCCCCH
Q 031970           98 IECSSKTQQNV  108 (150)
Q Consensus        98 ~~~Sa~~~~~i  108 (150)
                      .+.++.+..++
T Consensus       308 ~p~~~~~~~~~  318 (369)
T 3ec1_A          308 SPPSKRYAAEF  318 (369)
T ss_dssp             CSSCGGGTTTC
T ss_pred             CCCCchhhhhc
Confidence            55565544333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	150
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	3e-26
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-23
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	5e-23
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	4e-21
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-19
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-18
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	1e-17
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-17
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	5e-17
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	1e-15
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	4e-15
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	6e-15
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	8e-15
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	8e-15
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	1e-14
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-14
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-14
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	8e-14
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	1e-13
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	3e-13
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	3e-13
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-12
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-12
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	7e-11
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	1e-10
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-10
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	3e-10
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	5e-10
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	1e-09
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	1e-09
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-09
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	4e-08
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	4e-08
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	3e-07
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	6e-07
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	8e-07
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	1e-06
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	6e-06
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	7e-06
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-06
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	1e-05
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	1e-05
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-05
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-05
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	3e-05
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	5e-05
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	4e-04
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	4e-04
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	4e-04
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	7e-04
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	0.002
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	0.002

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (237), Expect = 3e-26
 Identities = 61/135 (45%), Positives = 88/135 (65%), Gaps = 6/135 (4%)

Query: 6   QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 65
           QEDY+RLRPLSY   DVF++ FS+VS +S+ENV +KW+PE+ H+ P  P +LVGT++DLR
Sbjct: 61  QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR 120

Query: 66  EDKHYLADHPG--LVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123
           +D   +         P+T    E+L + + A  Y+ECS+ TQ+ +K VFD AI   ++PP
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 180

Query: 124 QKQKEKKKKQRGCLL 138
           +     KK +R  LL
Sbjct: 181 E----PKKSRRCVLL 191

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.5 bits (218), Expect = 2e-23
 Identities = 58/119 (48%), Positives = 86/119 (72%), Gaps = 2/119 (1%)

Query: 6   QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 65
           QEDY+RLRPLSY   DVF++ FS+V+ AS++NV ++W+PEL+ Y+P VP +L+GT++DLR
Sbjct: 67  QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 126

Query: 66  EDKHYL--ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 122
           +D   L   +     P+   QG++L K+IGA  Y+ECS+ TQ+ +K VFD AI  ++ P
Sbjct: 127 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 185

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.4 bits (215), Expect = 5e-23
 Identities = 65/120 (54%), Positives = 85/120 (70%), Gaps = 2/120 (1%)

Query: 6   QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 65
           QEDY+RLRPLSY   DV ++ FSLVS AS+ENV  KW PE++H+ P  P++LVGTKLDLR
Sbjct: 63  QEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 122

Query: 66  EDKHYLADHP--GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123
           +DK  +       L P+T  QG  + K+IGA  Y+ECS+ TQ+ +K VFD AI+ V+ PP
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.4 bits (202), Expect = 4e-21
 Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 6   QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 65
              Y+ +RPLSY  +D  ++ F +    + ++VLKKW  E+Q + P   ++LVG K DLR
Sbjct: 60  SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 119

Query: 66  EDKHYLADHP--GLVPVTTAQGEELRKQIGASYYIECSSKTQQN-VKAVFDAAIKVVIK 121
            D   L +       PV+  QG  + KQIGA+ YIECS+   +N V+ +F  A    + 
Sbjct: 120 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (192), Expect = 1e-19
 Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 2/119 (1%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           G EDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VP++LVG K DL
Sbjct: 59  GLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 118

Query: 65  REDKHYLADH--PGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           R D+H   +       PV   +G ++  +IGA  Y+ECS+KT+  V+ VF+ A +  ++
Sbjct: 119 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.0 bits (181), Expect = 4e-18
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 12/117 (10%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE +  +    YRGA   +L + +    ++ N+ + +    +H +    ++LVG K D+
Sbjct: 60  GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 119

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
                           T  QGE L K++G   +IE S+K   NV  +F    K++ +
Sbjct: 120 ETRVV-----------TADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 164

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.4 bits (179), Expect = 1e-17
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 11/123 (8%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE Y R+    YRGA   +L + +    +YENV +       H    + ++LVG K DL
Sbjct: 62  GQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL 121

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124
           R  +             T +     ++   S +IE S+    NV+  F   +  + +   
Sbjct: 122 RHLRAV----------PTDEARAFAEKNNLS-FIETSALDSTNVEEAFKNILTEIYRIVS 170

Query: 125 KQK 127
           +++
Sbjct: 171 QKQ 173

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (176), Expect = 2e-17
 Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 11/113 (9%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE +  +    YRGA   ++ + +  R++Y ++           +P   ++L+G K DL
Sbjct: 62  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL 121

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 117
              +            T  + ++  ++ G   ++E S+KT +NV+  F  A K
Sbjct: 122 EAQRDV----------TYEEAKQFAEENGLL-FLEASAKTGENVEDAFLEAAK 163

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.5 bits (174), Expect = 5e-17
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 11/125 (8%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQE +  +    YRGA   +L + +  R ++ ++        QH S  + ++L+G 
Sbjct: 57  WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGN 116

Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120
           K DL   +    +           GE   ++ G   ++E S+KT  NV+  F    K + 
Sbjct: 117 KSDLESRRDVKREE----------GEAFAREHGLI-FMETSAKTACNVEEAFINTAKEIY 165

Query: 121 KPPQK 125
           +  Q+
Sbjct: 166 RKIQQ 170

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.0 bits (165), Expect = 1e-15
 Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 11/130 (8%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE +  +    YRG+   ++ + +  + S+  V        ++ +  V  +LVG K DL
Sbjct: 64  GQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL 123

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124
           ++ +    D             +         ++E S+    NV+  F    + + +   
Sbjct: 124 KDKRVVEYDVA-----------KEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 172

Query: 125 KQKEKKKKQR 134
           +Q   +  Q+
Sbjct: 173 QQNLNETTQK 182

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (161), Expect = 4e-15
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 11/113 (9%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE +  L P   R +   V+ + + +  S++   K            V ++LVG K DL
Sbjct: 58  GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 117

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 117
            + +    +            E   K++    +IE S+K   NVK +F     
Sbjct: 118 ADKRQVSIEEG----------ERKAKELNVM-FIETSAKAGYNVKQLFRRVAA 159

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.1 bits (160), Expect = 6e-15
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 11/117 (9%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE Y  +    YRGA  F+L + + +  S+  V         +      V+LVG K D+
Sbjct: 63  GQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM 122

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
            +++   ++             +L   +G   + E S+K   NVK  F+  + V+ +
Sbjct: 123 EDERVVSSERG----------RQLADHLGFE-FFEASAKDNINVKQTFERLVDVICE 168

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.6 bits (159), Expect = 8e-15
 Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 11/121 (9%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE +  +    YRGA   +L + + +  S++N+        +H S  V  +++G K D+
Sbjct: 64  GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124
            + +            +  +GE+L    G   ++E S+K   NV+  F    + +     
Sbjct: 124 NDKRQV----------SKERGEKLALDYGIK-FMETSAKANINVENAFFTLARDIKAKMD 172

Query: 125 K 125
           K
Sbjct: 173 K 173

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (159), Expect = 8e-15
 Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 12/118 (10%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH-YSPGVPVVLVGTKLD 63
           GQE +  L    +R A  F+L F L S+ S+ NV         + Y     +VL+G K D
Sbjct: 73  GQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKAD 132

Query: 64  LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           L + +               Q  EL  + G   Y E S+ T QNV+   +  + +++K
Sbjct: 133 LPDQREV----------NERQARELADKYGIP-YFETSAATGQNVEKAVETLLDLIMK 179

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (158), Expect = 1e-14
 Identities = 27/118 (22%), Positives = 60/118 (50%), Gaps = 12/118 (10%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVG 59
           ++  G E +  +R L  +    F+L +SLV++ S++++       ++      VPV+LVG
Sbjct: 56  LDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVG 115

Query: 60  TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 117
            K+DL  ++            ++++G  L ++ G  + +E S+K++  V  +F   ++
Sbjct: 116 NKVDLESEREV----------SSSEGRALAEEWGCPF-METSAKSKTMVDELFAEIVR 162

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (156), Expect = 2e-14
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 11/117 (9%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE +  +    YR A+  +L + +    S+  + +      Q+ S  V  VLVG K+DL
Sbjct: 63  GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDL 122

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
            E +            +  + EE  +     YY+E S+K   NV+ +F      +I 
Sbjct: 123 AERREV----------SQQRAEEFSEAQDM-YYLETSAKESDNVEKLFLDLACRLIS 168

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (155), Expect = 3e-14
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 11/117 (9%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE +  +    YR A   +L + + ++AS++N+        ++    V ++L+G K+D 
Sbjct: 65  GQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDS 124

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
             ++           V    GE+L K+ G   ++E S+KT  NV   F A  K + +
Sbjct: 125 AHER----------VVKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTAIAKELKR 170

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 8e-14
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 11/123 (8%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE +  +    YRGA   +L + + SR +Y  +           S  + ++L G K DL
Sbjct: 63  GQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDL 122

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 124
             D+                     ++    + +E S+ T +NV+  F    + ++   +
Sbjct: 123 DADREVTFLEA----------SRFAQENELMF-LETSALTGENVEEAFVQCARKILNKIE 171

Query: 125 KQK 127
             +
Sbjct: 172 SGE 174

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 1e-13
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 15/125 (12%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPVV 56
            +  GQE +  LR   YRG+D  +L FS+    S++N+       + +         P V
Sbjct: 60  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 119

Query: 57  LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI 116
           ++G K+D+ E +            +T + +   +  G   Y E S+K   NV A F+ A+
Sbjct: 120 ILGNKIDISERQV-----------STEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAV 168

Query: 117 KVVIK 121
           + V+ 
Sbjct: 169 RRVLA 173

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 3e-13
 Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 11/121 (9%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQE ++ L P+ YR ++  +L + +    S++ V        +     + + +VG 
Sbjct: 57  WDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGN 116

Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120
           K+DL +++H           +  + E   + +GA +Y   S+K  + ++ +F    K +I
Sbjct: 117 KIDLEKERHV----------SIQEAESYAESVGAKHY-HTSAKQNKGIEELFLDLCKRMI 165

Query: 121 K 121
           +
Sbjct: 166 E 166

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (148), Expect = 3e-13
 Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 11/121 (9%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQE Y+ L P+ YRGA   ++ + + +  S+           +  SP + + L G 
Sbjct: 60  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGN 119

Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120
           K DL   +               + +          ++E S+KT  NV  +F A  K + 
Sbjct: 120 KADLANKRAV----------DFQEAQSYADDNSLL-FMETSAKTSMNVNEIFMAIAKKLP 168

Query: 121 K 121
           K
Sbjct: 169 K 169

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 1e-12
 Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 11/119 (9%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 64
           GQE +  L P  YRGA   +L + +  R ++  +         + +    V ++      
Sbjct: 65  GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID 124

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 123
           +E++           V   +G +  ++    + IE S+KT   V+  F+  ++ +I+ P
Sbjct: 125 KENR----------EVDRNEGLKFARKHSMLF-IEASAKTCDGVQCAFEELVEKIIQTP 172

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 59.2 bits (142), Expect = 2e-12
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 14/123 (11%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLV 58
           ++  GQEDY  +R   +R  + F+  FS ++          +  ++        VP +LV
Sbjct: 57  LDTAGQEDYAAIRDNYFRSGEGFLCVFS-ITEMESFAATADFREQILRVKEDENVPFLLV 115

Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118
           G K DL + +            +  + +    Q   +Y +E S+KT+ NV  VF   ++ 
Sbjct: 116 GNKSDLEDKRQV----------SVEEAKNRADQWNVNY-VETSAKTRANVDKVFFDLMRE 164

Query: 119 VIK 121
           +  
Sbjct: 165 IRA 167

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 7e-11
 Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 11/122 (9%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVG 59
           ++  G E +  +R L  +    F L +S+ +++++ ++       L+   +  VP++LVG
Sbjct: 56  LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVG 115

Query: 60  TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119
            K DL +++               QG+ L +Q     ++E S+K++ NV  +F   ++ +
Sbjct: 116 NKCDLEDERVV----------GKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

Query: 120 IK 121
            +
Sbjct: 166 NR 167

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 1e-10
 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 15/129 (11%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVG 59
           ++  GQE++  +R    R    F+L F++  R S+  V K +   L+       PVVLVG
Sbjct: 59  LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVG 118

Query: 60  TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119
            K DL   +              ++          +Y  E S+K + NV   F+  ++ V
Sbjct: 119 NKADLESQRQV----------PRSEASAFGASHHVAY-FEASAKLRLNVDEAFEQLVRAV 167

Query: 120 IKPPQKQKE 128
            K    Q++
Sbjct: 168 RK---YQEQ 173

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.3 bits (129), Expect = 2e-10
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 13/124 (10%)

Query: 5   GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGT 60
           GQE +  L    YRGAD  VL + + + +S+EN+       L H +       P V++G 
Sbjct: 61  GQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGN 120

Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120
           K+D  E K  +++            +EL K +G       S+K   NV   F+   +  +
Sbjct: 121 KIDAEESKKIVSEK---------SAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 171

Query: 121 KPPQ 124
           +  Q
Sbjct: 172 QQNQ 175

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.5 bits (127), Expect = 3e-10
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQE +  L P+ YR A   ++ + +    S+           +  S  + + LVG 
Sbjct: 57  WDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGN 116

Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 117
           K+D+ ++        G   V   +GE+L ++ G  ++ E S+KT +NV  VF    +
Sbjct: 117 KIDMLQEG-------GERKVAREEGEKLAEEKGLLFF-ETSAKTGENVNDVFLGIGE 165

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (125), Expect = 5e-10
 Identities = 22/117 (18%), Positives = 46/117 (39%), Gaps = 11/117 (9%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  G E +  L P+ YRG+   ++ + +    ++  +        QH  P + V + G 
Sbjct: 58  WDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGN 117

Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 117
           K DL + +  +              ++    I A + +E S+K   N+  +F    +
Sbjct: 118 KCDLTDVREVMER----------DAKDYADSIHAIF-VETSAKNAININELFIEISR 163

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 1e-09
 Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 15/123 (12%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLV 58
           ++  GQE+Y+ +R    R  + F+  F++ +  S+E++  ++  +++       VP+VLV
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLV 114

Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118
           G K DL                 + Q ++L +  G  Y IE S+KT+Q V+  F   ++ 
Sbjct: 115 GNKCDLAARTV-----------ESRQAQDLARSYGIPY-IETSAKTRQGVEDAFYTLVRE 162

Query: 119 VIK 121
           + +
Sbjct: 163 IRQ 165

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 1e-09
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 12/122 (9%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVG 59
           ++  GQE++  +R    R  + F+L FS+  R S+E + K     L+       P++L+G
Sbjct: 58  LDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIG 117

Query: 60  TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119
            K DL   +            T  +G++L +Q+  +Y +E S+K + NV   F   ++V+
Sbjct: 118 NKADLDHQRQV----------TQEEGQQLARQLKVTY-MEASAKIRMNVDQAFHELVRVI 166

Query: 120 IK 121
            K
Sbjct: 167 RK 168

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 2e-09
 Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 13/123 (10%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLV 58
            +  G   +  ++ LS      F+L +S+ SR S E +  + + I E++     +P++LV
Sbjct: 55  TDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLV 114

Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 118
           G K D    +             +++ E L +    ++ +E S+K   NVK +F   + +
Sbjct: 115 GNKCDESPSREV----------QSSEAEALARTWKCAF-METSAKLNHNVKELFQELLNL 163

Query: 119 VIK 121
             +
Sbjct: 164 EKR 166

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (112), Expect = 4e-08
 Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 13/123 (10%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGV-PVVLVG 59
           ++  GQE+++ +R    R  D F++ +S+  +AS+E+V +     L+       P++LV 
Sbjct: 57  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 116

Query: 60  TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ-NVKAVFDAAIKV 118
            K+DL   +           VT  QG+E+  +    Y IE S+K    NV   F   ++V
Sbjct: 117 NKVDLMHLRK----------VTRDQGKEMATKYNIPY-IETSAKDPPLNVDKTFHDLVRV 165

Query: 119 VIK 121
           + +
Sbjct: 166 IRQ 168

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (112), Expect = 4e-08
 Identities = 30/135 (22%), Positives = 51/135 (37%), Gaps = 15/135 (11%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP----GVPVV 56
            +  GQE +  L    YRGAD  VL F + +  +++ +       L   SP      P V
Sbjct: 56  WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFV 115

Query: 57  LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI 116
           ++G K+DL   +             T + +          Y E S+K   NV+  F    
Sbjct: 116 VLGNKIDLENRQV-----------ATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 164

Query: 117 KVVIKPPQKQKEKKK 131
           +  +K   + +   +
Sbjct: 165 RNALKQETEVELYNE 179

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 3e-07
 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 14/124 (11%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQE +  LR   Y  A   ++ F + SR +Y+NV   W  +L      +P+VL G 
Sbjct: 57  WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGN 115

Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120
           K+D+++ K               + + L+       Y + S+K+  N +  F    + +I
Sbjct: 116 KVDIKDRKVKAKSI------VFHRKKNLQ-------YYDISAKSNYNFEKPFLWLARKLI 162

Query: 121 KPPQ 124
             P 
Sbjct: 163 GDPN 166

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 6e-07
 Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 11/114 (9%)

Query: 17  YRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLAD 73
              AD  +  FSL    S++ V  L   +  L+     G+ + LVGT+  +         
Sbjct: 68  SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPR--- 124

Query: 74  HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQK 127
                 V  A+   L   +    Y E  +    NV  VF    + V+   ++Q+
Sbjct: 125 -----VVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQ 173

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 44.2 bits (103), Expect = 8e-07
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 9/102 (8%)

Query: 17  YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHP 75
           +   D+ +       R  +E   ++    L+      VPV++   K DL           
Sbjct: 81  FENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP------ 134

Query: 76  GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 117
               +         +         CS+ T + V+   +   K
Sbjct: 135 -ASEIAEGLNLHTIRDRVW-QIQSCSALTGEGVQDGMNWVCK 174

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 43.9 bits (102), Expect = 1e-06
 Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 5/118 (4%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWI-PELQHYSPGVPVVLVG 59
            ++ G     R+        +  V               ++            VP++++G
Sbjct: 62  FDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILG 121

Query: 60  TKLDLREDKHY--LADHPGLVPVTTAQGEELRKQIGAS--YYIECSSKTQQNVKAVFD 113
            K+D  E      L +  GL   TT +G    K++ A       CS   +Q     F 
Sbjct: 122 NKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 179

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.6 bits (96), Expect = 6e-06
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 16/117 (13%)

Query: 1   MNVIGQEDYNRL-RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLV 58
            +  GQE + +      YR     V  + + + AS+ ++        QH  +  +P +LV
Sbjct: 56  WDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILV 115

Query: 59  GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ---NVKAVF 112
           G K DLR                T   ++         + E S+K      +V+A+F
Sbjct: 116 GNKCDLRSAIQV----------PTDLAQKFADTHSMPLF-ETSAKNPNDNDHVEAIF 161

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.2 bits (95), Expect = 7e-06
 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 12/121 (9%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +  GQE+++ +    YRGA   VL FS   R S+E +   W  ++      +P  LV  
Sbjct: 56  WDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALV-- 112

Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 120
                       D      +   + E L K++   +Y   S K   NV  VF    +  +
Sbjct: 113 --------QNKIDLLDDSCIKNEEAEGLAKRLKLRFY-RTSVKEDLNVSEVFKYLAEKHL 163

Query: 121 K 121
           +
Sbjct: 164 Q 164

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 8e-06
 Identities = 14/113 (12%), Positives = 30/113 (26%), Gaps = 7/113 (6%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +V GQ+    L    ++     +       R       ++ +  L        V+LV  
Sbjct: 49  WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFA 108

Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
                 +    A+      +T   G    +     Y     + +   +    D
Sbjct: 109 NKQDLPNAMNAAE------ITDKLGLHSLRHRNW-YIQATCATSGDGLYEGLD 154

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 1e-05
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 13/110 (11%)

Query: 14  PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLA 72
               R  + FVL + +  R S+E VL       +   P  V ++LVG K DL   +    
Sbjct: 67  EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQV-- 124

Query: 73  DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ-NVKAVFDAAIKVVIK 121
                   +T +GE+L  ++  ++Y ECS+ T + N+  +F    + V +
Sbjct: 125 --------STEEGEKLATELACAFY-ECSACTGEGNITEIFYELCREVRR 165

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.1 bits (95), Expect = 1e-05
 Identities = 20/147 (13%), Positives = 39/147 (26%), Gaps = 26/147 (17%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV----------LKKWIPELQHYS 50
            +V GQ    +     + G    +   +L                   +K +     +  
Sbjct: 47  FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 106

Query: 51  -PGVPVVLVGT-------KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS------- 95
                ++L          K+          ++ G      A      +    +       
Sbjct: 107 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKE 166

Query: 96  -YYIECSSKTQQNVKAVFDAAIKVVIK 121
            Y     +   +NV+ VFDA   V+IK
Sbjct: 167 IYTHFTCATDTKNVQFVFDAVTDVIIK 193

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 2e-05
 Identities = 13/117 (11%), Positives = 33/117 (28%), Gaps = 12/117 (10%)

Query: 6   QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG-VPVVLVGTKLDL 64
           QE         Y   +  ++      R       ++    L H       +++   K D+
Sbjct: 69  QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 128

Query: 65  REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA---AIKV 118
           +E          +  ++        K     +   C + T + +    +     +K+
Sbjct: 129 KECMT-------VAEISQFLKLTSIKDHQW-HIQACCALTGEGLCQGLEWMMSRLKI 177

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 2e-05
 Identities = 13/113 (11%), Positives = 29/113 (25%), Gaps = 7/113 (6%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            +V GQ+    L    Y G    +       R   +   ++    +        ++L+  
Sbjct: 61  WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA 120

Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
                 +K  L D      +    G    +     Y     + +   +     
Sbjct: 121 ------NKQDLPDAMKPHEIQEKLGLTRIRDRNW-YVQPSCATSGDGLYEGLT 166

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.7 bits (91), Expect = 3e-05
 Identities = 9/113 (7%), Positives = 25/113 (22%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT 60
            ++ G     RL    +   +  V          ++    +               ++  
Sbjct: 49  FDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILG 108

Query: 61  KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 113
                 +    A+    + +    G +  +         CS   +      F 
Sbjct: 109 NKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 161

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 5e-05
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 11/75 (14%)

Query: 47  QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 106
              +  +P++LVG K DL   +            + ++G          + IE S+  Q 
Sbjct: 106 ARQTEDIPIILVGNKSDLVRCREV----------SVSEGRACAVVFDCKF-IETSAAVQH 154

Query: 107 NVKAVFDAAIKVVIK 121
           NVK +F+  ++ V  
Sbjct: 155 NVKELFEGIVRQVRL 169

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (84), Expect = 4e-04
 Identities = 22/147 (14%), Positives = 42/147 (28%), Gaps = 26/147 (17%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV----------LKKWIPELQHYS 50
           ++V GQ    R     +      +   +L                      +   + +  
Sbjct: 50  VDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 109

Query: 51  -PGVPVVLVGTKLDLREDK-------HYLADHPGLVPVTTAQGEELRKQIGAS------- 95
                V+L   K DL E+K        Y  ++ G      A  E + K            
Sbjct: 110 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKI 169

Query: 96  -YYIECSSKTQQNVKAVFDAAIKVVIK 121
            Y     +   +N++ VF A    +++
Sbjct: 170 IYSHFTCATDTENIRFVFAAVKDTILQ 196

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 4e-04
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 84  QGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
           +G+ L +   A++ +E S+K  Q    VF   I    K
Sbjct: 131 EGKALAESWNAAF-LESSAKENQTAVDVFRRIILEAEK 167

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 4e-04
 Identities = 8/34 (23%), Positives = 20/34 (58%), Gaps = 4/34 (11%)

Query: 97  YIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKK 130
           +IE S+    NV+A+F+  ++ +    + +++ K
Sbjct: 139 FIETSAALHHNVQALFEGVVRQI----RLRRDSK 168

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 7e-04
 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 8/71 (11%)

Query: 47  QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 106
           +    G+PV+++G K DL               +         +          S K + 
Sbjct: 99  KPQLQGIPVLVLGNKRDLPGALDE-------KELIEKMNLSAIQDREICC-YSISCKEKD 150

Query: 107 NVKAVFDAAIK 117
           N+       I+
Sbjct: 151 NIDITLQWLIQ 161

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 13/114 (11%), Positives = 26/114 (22%), Gaps = 9/114 (7%)

Query: 9   YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLRED 67
                   Y      +       +       K+    LQ        +++   K D    
Sbjct: 74  IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ--- 130

Query: 68  KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 121
                       V+        K    S  +  S+   + +    D  I V+ +
Sbjct: 131 ----PGALSASEVSKELNLVELKDRSWSI-VASSAIKGEGITEGLDWLIDVIKE 179

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 34.3 bits (77), Expect = 0.002
 Identities = 15/122 (12%), Positives = 33/122 (27%), Gaps = 9/122 (7%)

Query: 1   MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVG 59
            +V GQ+         +   D  +       R   ++  ++    L      G  +++  
Sbjct: 51  WDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFA 110

Query: 60  TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV 119
            K DL                     E    +        CS+ T +++    D  +  +
Sbjct: 111 NKQDLPGALS--------CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

Query: 120 IK 121
             
Sbjct: 163 SS 164

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	150
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.94
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.93
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.92
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.92
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.92
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.91
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.91
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.91
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.91
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.89
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.89
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.89
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.88
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.87
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.86
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.86
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.82
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.82
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.82
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.81
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.81
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.73
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.7
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.64
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.6
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.55
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.55
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.51
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.48
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.48
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.48
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.47
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.46
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.45
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.45
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.41
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.32
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.3
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.26
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.25
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.24
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.22
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.17
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.14
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.1
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.05
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.95
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.89
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.82
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.79
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.78
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.72
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.7
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.6
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.5
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.4
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.33
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.3
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.27
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.11
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.6
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.29
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.13
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.58
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.35
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.59
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	90.76
d1pvda1	179	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	81.48

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9e-28  Score=166.51  Aligned_cols=125  Identities=46%  Similarity=0.837  Sum_probs=105.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||+|+++|..+++.+++++|++++|||++++.||+.+...|...+....++.|+++|+||+|+........  ......
T Consensus        56 ~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~  135 (191)
T d2ngra_          56 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQK  135 (191)
T ss_dssp             EEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred             cccccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccc
Confidence            999999999999999999999999999999999999985567777777778999999999999976532110  111234


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcc
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQK  125 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~  125 (150)
                      .|..+++..+++.++..+|+++||++|.||+++|+.+++.+++++++
T Consensus       136 ~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~~~~~~~  182 (191)
T d2ngra_         136 PITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP  182 (191)
T ss_dssp             CCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHHHHHHHTSCCST
T ss_pred             cccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHhcCcCC
Confidence            57889999999998755999999999999999999999999887543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.1e-27  Score=160.74  Aligned_cols=109  Identities=23%  Similarity=0.411  Sum_probs=92.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|..+++.+++++|++|+|||++++.|++.+ ..|...+....  .++|+++||||+|+.....         
T Consensus        53 ~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~---------  122 (168)
T d2gjsa1          53 YDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE---------  122 (168)
T ss_dssp             EECC-------CHHHHHTSCSEEEEEEETTCHHHHHHH-HHHHHHHHHHCC--CCCEEEEEECTTCGGGCC---------
T ss_pred             eecccccccceecccchhhhhhhceecccccccccccc-ccccchhhcccccccceEEEeecccchhhhcc---------
Confidence            99999999999999999999999999999999999998 89998887665  4689999999999977544         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                       +...++..+++.+++ +|+++||++|.||+++|+.|++.+..
T Consensus       123 -v~~~~~~~~~~~~~~-~~~e~Sak~~~~v~~~f~~l~~~i~~  163 (168)
T d2gjsa1         123 -VSVDEGRACAVVFDC-KFIETSAALHHNVQALFEGVVRQIRL  163 (168)
T ss_dssp             -SCHHHHHHHHHHHTS-EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             -hhHHHHHHHHHhcCC-EEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence             488899999999998 99999999999999999999998764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-26  Score=159.60  Aligned_cols=122  Identities=49%  Similarity=0.913  Sum_probs=104.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||+|+++|..++..+++++|++++|||++++.||+++...|...++...+++|+++||||+|+........  .....+
T Consensus        62 ~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r  141 (185)
T d2atxa1          62 YDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEK  141 (185)
T ss_dssp             ECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCC
T ss_pred             ccccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccc
Confidence            999999999999999999999999999999999999876788888888778999999999999976432110  111234


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      .|..+++.++++.++..+|++|||++|.||+++|+.+++.++.|
T Consensus       142 ~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~il~P  185 (185)
T d2atxa1         142 PICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP  185 (185)
T ss_dssp             CCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred             cccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHcCC
Confidence            57889999999999865999999999999999999999998764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1e-26  Score=157.42  Aligned_cols=109  Identities=28%  Similarity=0.491  Sum_probs=101.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||+|++++..+++.++++++++++|||++++.|++.+ ..|++.+.+..+++|+++||||+|+.+.+.          +
T Consensus        56 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~----------v  124 (164)
T d1z2aa1          56 WDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------I  124 (164)
T ss_dssp             ECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----------S
T ss_pred             eccCCccchhhhhhhhhccCceEEEEEeccchhhhhhc-ccccccccccCCCceEEEeeccCCccccee----------e
Confidence            89999999999999999999999999999999999998 899999998888999999999999987654          4


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      ..+++..+++.+++ +++++||++|.||+++|+.|++.+++
T Consensus       125 ~~~~~~~~~~~~~~-~~~e~Sak~g~~v~e~f~~l~~~~lq  164 (164)
T d1z2aa1         125 KNEEAEGLAKRLKL-RFYRTSVKEDLNVSEVFKYLAEKHLQ  164 (164)
T ss_dssp             CHHHHHHHHHHHTC-EEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             eehhhHHHHHHcCC-EEEEeccCCCcCHHHHHHHHHHHHhC
Confidence            88899999999998 99999999999999999999998864

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-26  Score=158.39  Aligned_cols=121  Identities=43%  Similarity=0.800  Sum_probs=103.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      |||+|++.|..+++.|++++|++|+|||++++.||+.+...|...+....+++|++|||||+|+.+......  ......
T Consensus        55 ~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~  134 (177)
T d1kmqa_          55 WDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQE  134 (177)
T ss_dssp             EEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCC
T ss_pred             cccCccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcc
Confidence            999999999999999999999999999999999999885667787887778999999999999976432100  011223


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      .+..+++..+++.++..+|++|||++|.||+++|+.+++.+++
T Consensus       135 ~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         135 PVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             cccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhC
Confidence            4788999999999997799999999999999999999998764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.4e-25  Score=152.13  Aligned_cols=109  Identities=27%  Similarity=0.553  Sum_probs=92.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|++++..+++.+++++|++|+|||++++.||+.+ ..|+..+.... ...|+++||||+|+.....          
T Consensus        57 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~-~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~----------  125 (167)
T d1z08a1          57 WDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------  125 (167)
T ss_dssp             EECCCC-------CCSSTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----------
T ss_pred             eccCCcceecccchhhccCCceeEEEEeCCchhHHHhh-hhhhhhcccccccccceeeeccccccccccc----------
Confidence            99999999999999999999999999999999999998 78887776554 5789999999999987654          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      |..+++..+++.+++ +++++||++|.||+++|..|++.+++
T Consensus       126 v~~~e~~~~a~~~~~-~~~e~Sak~~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         126 VSIQEAESYAESVGA-KHYHTSAKQNKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             SCHHHHHHHHHHTTC-EEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHHcCC-eEEEEecCCCcCHHHHHHHHHHHHhh
Confidence            588999999999998 99999999999999999999999875

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.3e-25  Score=152.66  Aligned_cols=110  Identities=30%  Similarity=0.620  Sum_probs=99.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..+++.++++||++|+|||++++.++... ..|...+.... ++.|+++|+||+|+.+...          
T Consensus        59 wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------  127 (169)
T d3raba_          59 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----------  127 (169)
T ss_dssp             EEECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTH-HHHHHHHHHHCCSCCEEEEEEECTTCGGGCC----------
T ss_pred             EECCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhh-hhhhhhhhcccCCcceEEEEEeecccccccc----------
Confidence            99999999999999999999999999999999999998 77777776655 5799999999999877654          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      +..+++..+++.+++ +++++||++|.||+++|+.+++.++++
T Consensus       128 v~~~~~~~~~~~~~~-~~~e~Sak~g~gv~e~f~~l~~~i~ek  169 (169)
T d3raba_         128 VSSERGRQLADHLGF-EFFEASAKDNINVKQTFERLVDVICEK  169 (169)
T ss_dssp             SCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHHHTC
T ss_pred             cchhhhHHHHHHcCC-EEEEecCCCCcCHHHHHHHHHHHHhhC
Confidence            478889999999998 999999999999999999999998763

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.8e-25  Score=153.75  Aligned_cols=124  Identities=53%  Similarity=0.898  Sum_probs=104.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc--CCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~--~~~~~~   78 (150)
                      ||++|++.|..+++.+++++|++++|||++++.||+.+...|...+....+++|++||+||+|+........  ......
T Consensus        58 ~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~  137 (183)
T d1mh1a_          58 WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT  137 (183)
T ss_dssp             ECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred             ecccccccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhcccc
Confidence            999999999999999999999999999999999999985568888887778899999999999865432100  011123


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  124 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  124 (150)
                      .+...++..+++.++..+|++|||++|.||+++|+.+++.++.+|+
T Consensus       138 ~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il~pp~  183 (183)
T d1mh1a_         138 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPPP  183 (183)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCCC
T ss_pred             chhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHHcCCCC
Confidence            4577888999999986699999999999999999999999998763

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.2e-26  Score=156.02  Aligned_cols=110  Identities=27%  Similarity=0.483  Sum_probs=98.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      |||+|++++..+++.+++++|++++|||++++.||+.+ ..|+..+.+..+++|+++||||+|+.....           
T Consensus        57 ~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~~~-----------  124 (170)
T d1i2ma_          57 WDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV-----------  124 (170)
T ss_dssp             EECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTH-HHHHHHHHHHHCSCCEEEEEECCCCSCSCC-----------
T ss_pred             cccccccccceecchhcccccchhhccccccccccchh-HHHHHHHhhccCCCceeeecchhhhhhhhh-----------
Confidence            99999999999999999999999999999999999998 899999888778999999999999876542           


Q ss_pred             CHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970           81 TTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  124 (150)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  124 (150)
                       ..+...+++..++ +|+++||++|.||+++|..|++.++..+.
T Consensus       125 -~~~~~~~~~~~~~-~~~e~Sak~~~~v~e~f~~l~~~l~~~~~  166 (170)
T d1i2ma_         125 -KAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLWLARKLIGDPN  166 (170)
T ss_dssp             -TTTSHHHHSSCSS-EEEEEBTTTTBTTTHHHHHHHHHHHTCTT
T ss_pred             -hhHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHccCCC
Confidence             2345577888887 99999999999999999999999986543

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.2e-25  Score=152.95  Aligned_cols=109  Identities=29%  Similarity=0.537  Sum_probs=99.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|++++..+++.+++++|++++|||++++.||+.+ +.|...+.+..  .+.|+++||||+|+.....         
T Consensus        57 ~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~-~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~---------  126 (169)
T d1x1ra1          57 LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK---------  126 (169)
T ss_dssp             EECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC---------
T ss_pred             cccccccccccchhhhhhhccEEEEecccccchhhhcc-chhhHHHHhhccccCccEEEEecccchhhhce---------
Confidence            99999999999999999999999999999999999998 89998887654  4799999999999987644         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCC-CHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQ-NVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~l~~~~~~  121 (150)
                       |..+++.++++.+++ +|+++||+++. ||+++|..|++.+.+
T Consensus       127 -v~~e~~~~~~~~~~~-~~~e~Sak~~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         127 -VTRDQGKEMATKYNI-PYIETSAKDPPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             -SCHHHHHHHHHHHTC-CEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             -eehhhHHHHHHHcCC-EEEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence             588999999999998 99999999875 999999999998864

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.1e-25  Score=152.22  Aligned_cols=109  Identities=28%  Similarity=0.507  Sum_probs=99.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|..++..+++++|++|+|||++++.||+.+ ..|...+.+..  +++|++|||||+|+.....         
T Consensus        59 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~---------  128 (173)
T d2fn4a1          59 LDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ---------  128 (173)
T ss_dssp             EECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC---------
T ss_pred             cccccccccccccchhhccceeeeeecccccccccchh-hhhhHHHHHHhccCCCceEEEEEeechhhccc---------
Confidence            99999999999999999999999999999999999998 89988876543  5799999999999977654         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                       +..+++..+++.+++ +|+++||++|.||+++|+.+++.+.+
T Consensus       129 -~~~~~~~~~~~~~~~-~~~e~Sak~g~gv~e~f~~l~~~i~k  169 (173)
T d2fn4a1         129 -VPRSEASAFGASHHV-AYFEASAKLRLNVDEAFEQLVRAVRK  169 (173)
T ss_dssp             -SCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             -cchhhhhHHHHhcCC-EEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence             378899999999998 99999999999999999999998854

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.4e-25  Score=150.76  Aligned_cols=109  Identities=29%  Similarity=0.574  Sum_probs=98.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..+++.++++++++++|||++++.+++.+ ..|...+.+.. .+.|+++||||+|+.....          
T Consensus        59 ~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~----------  127 (171)
T d2ew1a1          59 WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE----------  127 (171)
T ss_dssp             EEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----------
T ss_pred             EECCCchhhHHHHHHHHhccceEEEeeecccchhhhhh-hhhhhhhcccccccccEEEEEeecccccccc----------
Confidence            99999999999999999999999999999999999998 78887776655 5799999999999876544          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +..+++..+++.+++ ++++|||++|.||+++|..+++.++.
T Consensus       128 v~~~~~~~~~~~~~~-~~~~~SAktg~gV~e~f~~l~~~l~~  168 (171)
T d2ew1a1         128 VSQQRAEEFSEAQDM-YYLETSAKESDNVEKLFLDLACRLIS  168 (171)
T ss_dssp             SCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHhCCC-EEEEEccCCCCCHHHHHHHHHHHHHH
Confidence            478889999999998 99999999999999999999988864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.6e-25  Score=149.49  Aligned_cols=108  Identities=25%  Similarity=0.395  Sum_probs=98.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|..++..+++++|++|+|||++++.||+.+ ..|...+.+..  +++|+++||||+|+.....         
T Consensus        57 ~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~---------  126 (167)
T d1xtqa1          57 VDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV---------  126 (167)
T ss_dssp             EECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHH-HHHHHHHHHHHCSSCCCEEEEEECTTCGGGCC---------
T ss_pred             cccccccccccccchhhhhhhhhhhhcccchhhhhhhh-hhhhhhhhhcccccccceeeeccccccccccc---------
Confidence            89999999999999999999999999999999999998 89988887653  4799999999999876544         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                       |..+++..+++.+++ +|+++||++|.||+++|+.+++.+.
T Consensus       127 -v~~~~~~~~a~~~~~-~~~e~Sak~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         127 -ISYEEGKALAESWNA-AFLESSAKENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             -SCHHHHHHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             -hhHHHHHHHHHHcCC-EEEEEecCCCCCHHHHHHHHHHHhc
Confidence             588899999999998 9999999999999999999998764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=7.1e-25  Score=148.63  Aligned_cols=108  Identities=23%  Similarity=0.529  Sum_probs=98.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|++++..+++.++++++++|+|||++++.+|+.+ ..|...+.+.. ++.|+++||||+|+.+...          
T Consensus        58 ~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------  126 (167)
T d1z0ja1          58 WDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----------  126 (167)
T ss_dssp             EEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----------
T ss_pred             eecCCchhhhHHHHHHHhhccceEEEeeechhhhhhhH-HHhhhhhhhccCCcceEEEecccchhccccc----------
Confidence            89999999999999999999999999999999999998 88887777665 5799999999999976554          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      +..+++.++++.+++ +|+++||++|.||+++|..|++.+.
T Consensus       127 v~~~~~~~~~~~~~~-~~~e~SAk~~~nV~e~f~~l~~~i~  166 (167)
T d1z0ja1         127 VMERDAKDYADSIHA-IFVETSAKNAININELFIEISRRIP  166 (167)
T ss_dssp             SCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred             hhHHHHHHHHHHcCC-EEEEEecCCCCCHHHHHHHHHHhCC
Confidence            488899999999998 9999999999999999999999873

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.6e-25  Score=149.01  Aligned_cols=109  Identities=28%  Similarity=0.499  Sum_probs=99.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|++++..+++.+++++|++++|||++++.+++.+ ..|+..+.... ++.|+++||||+|+.+...          
T Consensus        54 ~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------  122 (164)
T d1yzqa1          54 WDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------  122 (164)
T ss_dssp             EEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----------
T ss_pred             cccCCcchhccchHHHhhccceEEEeeccccccchhhh-HhhHHHHHHhcCCCceEEEEecccchhhhhh----------
Confidence            99999999999999999999999999999999999998 78877777554 6899999999999977654          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +..+++.++++.+++ +++++||++|.||+++|+.|++.+..
T Consensus       123 ~~~~~~~~~~~~~~~-~~~e~SAk~g~~v~e~f~~i~~~l~g  163 (164)
T d1yzqa1         123 VSIEEGERKAKELNV-MFIETSAKAGYNVKQLFRRVAAALPG  163 (164)
T ss_dssp             SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHSCC
T ss_pred             hhHHHHHHHHHHcCC-EEEEecCCCCcCHHHHHHHHHHhhCC
Confidence            377899999999998 99999999999999999999998753

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=7.1e-25  Score=150.47  Aligned_cols=121  Identities=36%  Similarity=0.640  Sum_probs=102.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccc--ccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY--LADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~--~~~~~~~~   78 (150)
                      |||+|++.+..+++.+++++|++|+|||++++.||+.+...|...+....++.|+++||||+|+......  ........
T Consensus        55 ~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~  134 (179)
T d1m7ba_          55 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQT  134 (179)
T ss_dssp             EEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred             ccccccccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcC
Confidence            9999999999999999999999999999999999999855677777777789999999999998653221  00122344


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCC-HHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQN-VKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~~~~~l~~~~~~  121 (150)
                      .|..+++..+++..+..+|+||||++|.+ |+++|+.+++.++.
T Consensus       135 ~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         135 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             CCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHHHHHHHhc
Confidence            57899999999999877999999999985 99999999998875

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.92  E-value=7.3e-25  Score=148.90  Aligned_cols=109  Identities=28%  Similarity=0.490  Sum_probs=96.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|++++..+++.+++++|++++|||++++.+++.+ ..|++.+.+..  +++|+++||||+|+.+...         
T Consensus        57 ~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~---------  126 (168)
T d1u8za_          57 LDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ---------  126 (168)
T ss_dssp             EECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC---------
T ss_pred             cccccccchhhhhhhcccccceeEEEeeccchhhhhhH-HHHHHHHHHhhCCCCCcEEEEecccccccccc---------
Confidence            89999999999999999999999999999999999998 89998887653  5799999999999876544         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                       +..+++..+++.+++ +++++||++|.||+++|+.|++.+..
T Consensus       127 -v~~~~~~~~~~~~~~-~~~e~Sak~g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         127 -VSVEEAKNRADQWNV-NYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             -SCHHHHHHHHHHHTC-EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             -ccHHHHHHHHHHcCC-eEEEEcCCCCcCHHHHHHHHHHHHHC
Confidence             588999999999998 99999999999999999999988753

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.5e-25  Score=154.35  Aligned_cols=109  Identities=33%  Similarity=0.571  Sum_probs=99.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|..+++.++++||++|+|||++++.+++.+ ..|...+....  +..|+++|+||+|+.....         
T Consensus        69 ~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~---------  138 (186)
T d2f7sa1          69 WDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE---------  138 (186)
T ss_dssp             EEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC---------
T ss_pred             ccCCcchhhHHHHHHHHhcCCEEEEEEeccccccceee-eeccchhhhhccCCCceEEEEeeeccchhhhc---------
Confidence            89999999999999999999999999999999999998 88988777654  4688999999999977644         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                       +..+++..+++.+++ +++++||++|.||+++|+.+++.+.+
T Consensus       139 -v~~~e~~~~~~~~~~-~~~e~Sak~~~~i~e~f~~l~~~i~~  179 (186)
T d2f7sa1         139 -VNERQARELADKYGI-PYFETSAATGQNVEKAVETLLDLIMK  179 (186)
T ss_dssp             -SCHHHHHHHHHHTTC-CEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             -chHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence             588999999999998 99999999999999999999998874

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1e-24  Score=148.68  Aligned_cols=107  Identities=25%  Similarity=0.465  Sum_probs=94.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|+++|  +++.+++++|++|+|||++++.|++.+ ..|...+....  +++|+++||||+|+.....         
T Consensus        61 ~~~~g~e~~--~~~~~~~~~~~~ilvfd~t~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~---------  128 (172)
T d2g3ya1          61 WENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE---------  128 (172)
T ss_dssp             TTTTHHHHH--HHHCCCCCCSEEEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC---------
T ss_pred             ccccccccc--cccccccccceeeeeecccccchhhhh-hhhhhhhhhccccCCceEEEEecccccccccc---------
Confidence            678899988  567899999999999999999999998 88888777543  5799999999999877644         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                       +..+++..+++.+++ +|+++||++|.||+++|..|++.+..
T Consensus       129 -v~~~~~~~~a~~~~~-~~~e~Sak~g~~i~~~f~~l~~~i~~  169 (172)
T d2g3ya1         129 -VSVSEGRACAVVFDC-KFIETSAAVQHNVKELFEGIVRQVRL  169 (172)
T ss_dssp             -SCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             -ccHHHHHHHHHHcCC-eEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence             488889999999998 99999999999999999999998753

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.5e-25  Score=151.25  Aligned_cols=109  Identities=25%  Similarity=0.465  Sum_probs=96.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh---CCCCCEEEEeeCCCcccccccccCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY---SPGVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~---~~~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      |||+|+++|..++..++++||++|+|||++++.+++.+ ..|...+.+.   ..++|+++||||+|+.....        
T Consensus        55 ~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~--------  125 (171)
T d2erxa1          55 TDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE--------  125 (171)
T ss_dssp             EECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC--------
T ss_pred             ccccccccccccccccccceeEEEEEeecccccchhcc-cchhhhhhhhhccCCCCcEEEEeeccccccccc--------
Confidence            99999999999999999999999999999999999998 7887776543   25799999999999876544        


Q ss_pred             CccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           78 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                        +..+++.++++.+++ +++++||++|.||+++|+.|++.+..
T Consensus       126 --v~~~e~~~~~~~~~~-~~~e~Sak~~~~v~e~f~~l~~~~~~  166 (171)
T d2erxa1         126 --VQSSEAEALARTWKC-AFMETSAKLNHNVKELFQELLNLEKR  166 (171)
T ss_dssp             --SCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred             --ccHHHHHHHHHHcCC-eEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence              478899999999998 99999999999999999999986643

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-24  Score=147.89  Aligned_cols=109  Identities=30%  Similarity=0.564  Sum_probs=98.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..+++.++++++++++|||++++.+++.+ ..|...+.+.. ++.|+++||||+|+.....          
T Consensus        60 ~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------  128 (170)
T d1r2qa_          60 WDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA----------  128 (170)
T ss_dssp             EEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------
T ss_pred             ccCCCchhhhhhHHHHhhCcceEEEEeccchhhHHHHH-HHHhhhhhhccCCCceEEeeccccccccccc----------
Confidence            89999999999999999999999999999999999998 77777776544 6899999999999977654          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +..+++..+++.+++ +|+++||++|.||+++|+.|++.+.+
T Consensus       129 v~~e~~~~~~~~~~~-~~~e~SAk~g~~V~e~f~~l~~~i~~  169 (170)
T d1r2qa_         129 VDFQEAQSYADDNSL-LFMETSAKTSMNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHTSCC
T ss_pred             ccHHHHHHHHHhcCC-EEEEeeCCCCCCHHHHHHHHHHHHhh
Confidence            488999999999998 99999999999999999999987754

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.3e-24  Score=147.25  Aligned_cols=107  Identities=26%  Similarity=0.567  Sum_probs=97.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..++..+++++|++|+|||++++.|++.+ ..|...+.+.. +..|++++|||+|+.....          
T Consensus        58 ~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------  126 (166)
T d1z0fa1          58 WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD----------  126 (166)
T ss_dssp             EECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------
T ss_pred             eccCCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHH-HHHHHHHHhhccccceEEEEcccccchhhcc----------
Confidence            89999999999999999999999999999999999998 78877777655 5799999999999876554          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      +..+++..+++.+++ +++++||++|.||+++|+.+++.+
T Consensus       127 ~~~~~~~~~~~~~~~-~~~e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         127 VTYEEAKQFAEENGL-LFLEASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHh
Confidence            377899999999998 999999999999999999999876

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.4e-24  Score=147.93  Aligned_cols=112  Identities=30%  Similarity=0.523  Sum_probs=89.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccccccccCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHP   75 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~D~~~~~~~~~~~~   75 (150)
                      |||+|++++..++..+++.++++++|||++++.||+.+ ..|+..+....     .++|+++|+||+|+.+....     
T Consensus        57 ~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~-----  130 (175)
T d1ky3a_          57 WDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI-----  130 (175)
T ss_dssp             ECCC----------CCSTTCCEEEEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC-----
T ss_pred             eccCCchhhhhHHHHHhhccceEEEEeecccccccchh-hhcchhhhhhhhhcccccCcEEEEecccchhhhhcc-----
Confidence            89999999999999999999999999999999999998 89998886532     37899999999999765432     


Q ss_pred             CCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           76 GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                          +..+++..+++.++..+++++||++|.||+++|+.|++.++++
T Consensus       131 ----v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~~~l~~  173 (175)
T d1ky3a_         131 ----VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ  173 (175)
T ss_dssp             ----SCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ----hhHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhc
Confidence                4778889999999755899999999999999999999988753

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.6e-24  Score=145.96  Aligned_cols=109  Identities=26%  Similarity=0.531  Sum_probs=99.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      ||++|++.|..+++.+++++|++|+|||++++.+|+.+ ..|...+.+.. +++|++||+||+|+.....          
T Consensus        57 ~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----------  125 (173)
T d2a5ja1          57 WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD----------  125 (173)
T ss_dssp             ECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------
T ss_pred             ecccCccchhhHHHHHhhccCEEEEEEeecChHHHHhH-HHHHHHHHHhCCCCCeEEEEecCCchhhhhh----------
Confidence            89999999999999999999999999999999999998 78887777765 5899999999999876654          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +..+++..+++.+++ +++++||++|.||+++|..+++.+..
T Consensus       126 ~~~~~~~~~a~~~~~-~~~e~Sa~tg~~V~e~f~~i~~~i~~  166 (173)
T d2a5ja1         126 VKREEGEAFAREHGL-IFMETSAKTACNVEEAFINTAKEIYR  166 (173)
T ss_dssp             SCHHHHHHHHHHHTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCC-EEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            378899999999998 99999999999999999999998863

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1e-24  Score=147.84  Aligned_cols=109  Identities=24%  Similarity=0.517  Sum_probs=97.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      ||++|++++..+++.|++++|++|+|||++++.||+.+ ..|+..+.+..  +++|+++||||+|+.....         
T Consensus        56 ~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~-~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~---------  125 (167)
T d1c1ya_          56 LDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV---------  125 (167)
T ss_dssp             EEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC---------
T ss_pred             ccccCcccccccccccccccceeEEeeeccchhhhHhH-HHHHHHHHHhcCCCCCeEEEEEEecCcccccc---------
Confidence            99999999999999999999999999999999999998 88888876643  5799999999999987655         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                       +..+++..+++.++..+++++||++|.||+++|+.|++.+.
T Consensus       126 -~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         126 -VGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             -SCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             -cchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHHHHHhc
Confidence             37788889998865459999999999999999999998774

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.1e-24  Score=148.26  Aligned_cols=112  Identities=23%  Similarity=0.458  Sum_probs=99.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..+++.++++|+++|+|||++++.++..+ ..|...+.+.. .+.|+++|+||.|+.....          
T Consensus        60 ~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----------  128 (194)
T d2bcgy1          60 WDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----------  128 (194)
T ss_dssp             ECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------
T ss_pred             EECCCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhH-hhhhhhhhhcccCCceEEEEEeccccccccc----------
Confidence            99999999999999999999999999999999999998 77777676544 6899999999999877554          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  124 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  124 (150)
                      +..++...+++..++ +++++||++|.||+++|+.+++.+.+...
T Consensus       129 ~~~~~~~~~~~~~~~-~~~e~SAk~g~gi~e~f~~l~~~i~~~~~  172 (194)
T d2bcgy1         129 VEYDVAKEFADANKM-PFLETSALDSTNVEDAFLTMARQIKESMS  172 (194)
T ss_dssp             SCHHHHHHHHHHTTC-CEEECCTTTCTTHHHHHHHHHHHHHHHCC
T ss_pred             hhHHHHhhhhhccCc-ceEEEecCcCccHHHHHHHHHHHHHHHhh
Confidence            478888999999997 89999999999999999999998876544

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.7e-24  Score=146.55  Aligned_cols=109  Identities=25%  Similarity=0.525  Sum_probs=84.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..+++.+++++|++|+|||++++.|++.+ ..|...+.... .+.|+++|+||.|+.....          
T Consensus        60 ~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~----------  128 (173)
T d2fu5c1          60 WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------  128 (173)
T ss_dssp             EEC---------CCTTTTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----------
T ss_pred             EECCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHH-HHHHHHhhhhccCCceEEEEEecccchhhcc----------
Confidence            99999999999999999999999999999999999998 88888887555 5799999999999887654          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      +..+++..++...++ +++++||++|.||.++|+.|++.+..
T Consensus       129 ~~~~~~~~~~~~~~~-~~~e~Sa~~g~gv~e~f~~l~~~i~~  169 (173)
T d2fu5c1         129 VSKERGEKLALDYGI-KFMETSAKANINVENAFFTLARDIKA  169 (173)
T ss_dssp             SCHHHHHHHHHHHTC-EEEECCC---CCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhcCC-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            367788899999998 99999999999999999999998853

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.6e-24  Score=147.66  Aligned_cols=110  Identities=24%  Similarity=0.485  Sum_probs=99.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|++++..+++.+++.++++|+|||.+++.+++.+ ..|...+.+.. ++.|+++|+||+|+.....          
T Consensus        59 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----------  127 (174)
T d2bmea1          59 WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE----------  127 (174)
T ss_dssp             EEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------
T ss_pred             EECCCchhhhhhHHHHhhhCCEEEEEEecccchhHHHH-hhhhcccccccCCceEEEEEEecccccchhc----------
Confidence            99999999999999999999999999999999999998 78888777665 5899999999999876544          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      +....+..+++.+++ +++++||++|.||+++|..+++.++++
T Consensus       128 ~~~~~~~~~~~~~~~-~~~e~Sak~~~gi~e~f~~l~~~i~~~  169 (174)
T d2bmea1         128 VTFLEASRFAQENEL-MFLETSALTGENVEEAFVQCARKILNK  169 (174)
T ss_dssp             SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHhCCC-EEEEeeCCCCcCHHHHHHHHHHHHHHH
Confidence            377888899999998 999999999999999999999998743

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.5e-24  Score=146.89  Aligned_cols=108  Identities=27%  Similarity=0.566  Sum_probs=97.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      ||++|++.+..++..++++||++++|||++++.+++.+ ..|...+.+..  +++|++|||||+|+.....         
T Consensus        56 ~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~---------  125 (167)
T d1kaoa_          56 LDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE---------  125 (167)
T ss_dssp             EECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC---------
T ss_pred             ccCCCccccccchHHHhhcccceeeeeeecchhhhhhh-hchhhhhhhhccCCCCCEEEEEEccchhhccc---------
Confidence            99999999999999999999999999999999999998 88887776544  5799999999999987654         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                       +..+++..+++.+++ +++++||++|.||+++|..+++.+-
T Consensus       126 -~~~~~~~~~~~~~~~-~~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         126 -VSSSEGRALAEEWGC-PFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             -SCHHHHHHHHHHHTS-CEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             -chHHHHHHHHHHcCC-eEEEECCCCCcCHHHHHHHHHHHHc
Confidence             377899999999998 8999999999999999999998764

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.1e-24  Score=145.45  Aligned_cols=109  Identities=28%  Similarity=0.528  Sum_probs=97.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|+++|..++..++++++++|+|||.+++.|+..+ ..|+..+.+.. +++|+++||||+|+.+....         
T Consensus        58 ~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~-~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~---------  127 (175)
T d2f9la1          58 WDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRAV---------  127 (175)
T ss_dssp             EECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS---------
T ss_pred             cccCCcHHHHHHHHHHhhccCeEEEEEECCCcccchhH-HHHHHHHHHhcCCCCcEEEEEeeecccccccc---------
Confidence            89999999999999999999999999999999999998 88888888776 57999999999999876543         


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                       .......+.+..+. +++++||++|.|++++|+.+++.+..
T Consensus       128 -~~~~~~~~~~~~~~-~~~e~Sa~~g~~i~e~f~~l~~~i~~  167 (175)
T d2f9la1         128 -PTDEARAFAEKNNL-SFIETSALDSTNVEEAFKNILTEIYR  167 (175)
T ss_dssp             -CHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHhhcccCc-eEEEEecCCCcCHHHHHHHHHHHHHH
Confidence             66677788888886 99999999999999999999998753

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.5e-24  Score=145.66  Aligned_cols=108  Identities=30%  Similarity=0.593  Sum_probs=94.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|++++..+++.++++||++++|||++++.||+.+ ..|...+.+..  .+.|+++||||+|+.....         
T Consensus        58 ~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~---------  127 (171)
T d2erya1          58 LDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEI-YKFQRQILRVKDRDEFPMILIGNKADLDHQRQ---------  127 (171)
T ss_dssp             EECC----CCHHHHHHHHHCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHTSSCCSEEEEEECTTCTTSCS---------
T ss_pred             ccccccccccccccccccccceEEEeeccccccchhhH-HHHhHHHHhhcccCCCCEEEEEeccchhhhcc---------
Confidence            89999999999999999999999999999999999998 88887776543  4799999999999876544         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                       +..+++..+++.+++ +|+++||++|.||+++|..|++.+.
T Consensus       128 -v~~~~~~~~~~~~~~-~~~e~Sak~~~~i~e~f~~l~~~i~  167 (171)
T d2erya1         128 -VTQEEGQQLARQLKV-TYMEASAKIRMNVDQAFHELVRVIR  167 (171)
T ss_dssp             -SCHHHHHHHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             -chHHHHHHHHHHcCC-EEEEEcCCCCcCHHHHHHHHHHHHH
Confidence             488899999999998 9999999999999999999999875

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.5e-23  Score=142.37  Aligned_cols=108  Identities=31%  Similarity=0.590  Sum_probs=89.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..++..+++++|++++|||++++.+++.+ ..|...+.+.. +..|+++|+||+|+.....          
T Consensus        61 ~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~----------  129 (170)
T d2g6ba1          61 WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERV----------  129 (170)
T ss_dssp             EECCCC--------CCGGGCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------
T ss_pred             EECCCchhhHHHHHHhhcCCceeEEEecCCcccchhhh-hhhhhhhhhccCCCceEEEEEeeechhhccc----------
Confidence            99999999999999999999999999999999999998 67766665544 5789999999999877654          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      +..+++..+++.+++ +++++||++|.||+++|..|++.+.
T Consensus       130 v~~~~~~~~~~~~~~-~~~e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         130 VKREDGEKLAKEYGL-PFMETSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             SCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHcCC-EEEEEeCCCCcCHHHHHHHHHHHcC
Confidence            478899999999998 9999999999999999999998875

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.9e-24  Score=142.78  Aligned_cols=108  Identities=30%  Similarity=0.551  Sum_probs=98.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      ||++|++.+...++.++++++++++|||++++.+|+.+ ..|+..+.+..  +++|+++|+||+|+....          
T Consensus        56 ~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~----------  124 (166)
T d1ctqa_          56 LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAART----------  124 (166)
T ss_dssp             EEECCCGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHTCSSCCEEEEEECTTCSCCC----------
T ss_pred             eeccCccccccchhhhhhcccccceeecccccccHHHH-HHHHHHHHHhcCCCCCeEEEEeccccccccc----------
Confidence            89999999999999999999999999999999999998 99999888654  579999999999986543          


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                       +..+++.++++.+++ +++++||++|.||+++|..+++.+.+
T Consensus       125 -~~~~~~~~~~~~~~~-~~~e~Sak~g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         125 -VESRQAQDLARSYGI-PYIETSAKTRQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             -SCHHHHHHHHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             -ccHHHHHHHHHHhCC-eEEEEcCCCCcCHHHHHHHHHHHHHh
Confidence             377899999999998 99999999999999999999988753

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=2.3e-23  Score=141.40  Aligned_cols=111  Identities=27%  Similarity=0.505  Sum_probs=98.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|++++..+++.+++++|++++|||++++.|++.+ ..|...+.... ...|+++|+||+|+.....       .+.
T Consensus        57 ~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~-------~~~  128 (170)
T d1ek0a_          57 WDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDMLQEGG-------ERK  128 (170)
T ss_dssp             EEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSSC-------CCC
T ss_pred             cccCCchhHHHHHHHHHhccceEEEEEeCCcccchhhh-hhhhhhhccccccccceeeeecccccccccc-------hhh
Confidence            99999999999999999999999999999999999998 78877666544 5799999999999876532       244


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      +..+++.++++..++ +|+++||++|.||+++|..|++.+.
T Consensus       129 v~~~~~~~~~~~~~~-~~~e~Sak~g~gV~e~F~~i~~~i~  168 (170)
T d1ek0a_         129 VAREEGEKLAEEKGL-LFFETSAKTGENVNDVFLGIGEKIP  168 (170)
T ss_dssp             SCHHHHHHHHHHHTC-EEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred             hhHHHHHHHHHHcCC-EEEEecCCCCcCHHHHHHHHHHHhc
Confidence            788999999999998 9999999999999999999988764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.6e-23  Score=142.16  Aligned_cols=107  Identities=31%  Similarity=0.491  Sum_probs=92.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|++.+. .+..++++|+++++|||++++.+++.+ ..|...+...  .++.|+++||||+|+.....         
T Consensus        55 ~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~---------  123 (168)
T d2atva1          55 LDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ---------  123 (168)
T ss_dssp             EECCCCCCCH-HHHHHHHHCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC---------
T ss_pred             eecccccccc-cchhhhcccccceeecccCCccchhhh-hhhcccccccccccCcceeeeccchhhhhhcc---------
Confidence            9999999875 456789999999999999999999998 7776555433  35899999999999976543         


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCC-CHHHHHHHHHHHHh
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQ-NVKAVFDAAIKVVI  120 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~l~~~~~  120 (150)
                       |+.+++..+++.+++ +|+++||++|. ||+++|..|++.+.
T Consensus       124 -V~~~e~~~~a~~~~~-~~~e~Saktg~gnV~e~F~~l~~~i~  164 (168)
T d2atva1         124 -VSTEEGEKLATELAC-AFYECSACTGEGNITEIFYELCREVR  164 (168)
T ss_dssp             -SCHHHHHHHHHHHTS-EEEECCTTTCTTCHHHHHHHHHHHHH
T ss_pred             -CcHHHHHHHHHHhCC-eEEEEccccCCcCHHHHHHHHHHHHH
Confidence             588999999999998 99999999998 59999999999875

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.6e-23  Score=140.08  Aligned_cols=111  Identities=28%  Similarity=0.589  Sum_probs=100.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|++++..+++.+++++|++|+|||++++.+++.+ ..|...+.+..  ...|+++++||.|.....          
T Consensus        61 ~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~----------  129 (177)
T d1x3sa1          61 WDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE----------  129 (177)
T ss_dssp             EEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSCC----------
T ss_pred             EECCCchhhHHHHHHHHhcCCEEEEEEECCCccccccc-hhhhhhhcccccccceeeEEEeecccccccc----------
Confidence            89999999999999999999999999999999999998 88988887755  368999999999976532          


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ  124 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~  124 (150)
                       +...++..+++.+++ +++++||++|.||.++|+.+++.+++++.
T Consensus       130 -v~~~~~~~~~~~~~~-~~~e~Sa~tg~gv~e~f~~l~~~l~~~p~  173 (177)
T d1x3sa1         130 -VDRNEGLKFARKHSM-LFIEASAKTCDGVQCAFEELVEKIIQTPG  173 (177)
T ss_dssp             -SCHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHHTSGG
T ss_pred             -ccHHHHHHHHHHCCC-EEEEEeCCCCCCHHHHHHHHHHHHccCcc
Confidence             488899999999998 99999999999999999999999998753

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=8.1e-23  Score=138.14  Aligned_cols=108  Identities=29%  Similarity=0.545  Sum_probs=97.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||||+++|..+++.++++++++|+|||.+++.|++.+ +.|...+.... ...|++++++|.|+.....          
T Consensus        56 ~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~----------  124 (166)
T d1g16a_          56 WDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETRVV----------  124 (166)
T ss_dssp             ECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTCCS----------
T ss_pred             EECCCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHH-HhhhhhhhccccCcceeeeecchhhhhhhhh----------
Confidence            99999999999999999999999999999999999998 77777776665 4688999999999876543          


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                       ..+++..+++.+++ +++++||++|.||+++|+.|++.+.+
T Consensus       125 -~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~e~f~~l~~~i~~  164 (166)
T d1g16a_         125 -TADQGEALAKELGI-PFIESSAKNDDNVNEIFFTLAKLIQE  164 (166)
T ss_dssp             -CHHHHHHHHHHHTC-CEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHhcCC-eEEEECCCCCCCHHHHHHHHHHHHHh
Confidence             77899999999997 99999999999999999999998864

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.4e-22  Score=135.49  Aligned_cols=109  Identities=33%  Similarity=0.608  Sum_probs=96.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccccccccCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHP   75 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~D~~~~~~~~~~~~   75 (150)
                      |||+|+.++...++.++..+++++++||.+++.|++.+ ..|++.+.+..     ++.|+++||||+|+.+..       
T Consensus        60 ~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~-------  131 (174)
T d1wmsa_          60 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-------  131 (174)
T ss_dssp             EECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-------
T ss_pred             ecccCcceehhhhhhhhhccceEEEEEeeecccccchh-hhHHHHHHHHhccccCCCceEEEeccccchhhcc-------
Confidence            89999999999999999999999999999999999998 88988876542     369999999999986532       


Q ss_pred             CCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           76 GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                          +..+++..+++.++..+|+++||++|.||+++|+.+++.++.
T Consensus       132 ----v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         132 ----VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             ----SCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             ----CcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHHHHHHHHHhc
Confidence                488899999998764499999999999999999999998864

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=3.6e-22  Score=134.64  Aligned_cols=104  Identities=26%  Similarity=0.464  Sum_probs=90.7

Q ss_pred             CCCCCcccccc-cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCC
Q 031970            1 MNVIGQEDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGL   77 (150)
Q Consensus         1 wDt~G~e~~~~-l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~   77 (150)
                      ||++|++.+.. .++.|++++|++|+|||++++.||+.+ ..|+..+.+..  +++|+++||||+|+.+...        
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~--------  126 (165)
T d1z06a1          56 WDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ--------  126 (165)
T ss_dssp             EECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC--------
T ss_pred             EeccCchhhccccceeeecCCCceEEEEEeehhhhhhhh-hhhhHHHHhhccCCCCeEEEEeccccchhccc--------
Confidence            78999887754 567899999999999999999999998 88998887754  5799999999999977644        


Q ss_pred             CccCHHHHHHHHHHcCCcEEEEeccCC---CCCHHHHHHHHH
Q 031970           78 VPVTTAQGEELRKQIGASYYIECSSKT---QQNVKAVFDAAI  116 (150)
Q Consensus        78 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~~~l~  116 (150)
                        +..+++..+++.+++ +++++||++   +.||+++|..|+
T Consensus       127 --v~~~~~~~~~~~~~~-~~~e~SAkt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         127 --VPTDLAQKFADTHSM-PLFETSAKNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             --SCHHHHHHHHHHTTC-CEEECCSSSGGGGSCHHHHHHHHC
T ss_pred             --hhHHHHHHHHHHCCC-EEEEEecccCCcCcCHHHHHHHhC
Confidence              588999999999998 999999997   569999998874

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=5.8e-22  Score=136.01  Aligned_cols=111  Identities=27%  Similarity=0.467  Sum_probs=96.6

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeeCCCcccccccccCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHP   75 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~D~~~~~~~~~~~~   75 (150)
                      |||+|++++..+++.++..||++++|||++++.+++.+ ..|++.+....     .++|+++|+||+|+.+..       
T Consensus        56 ~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~-------  127 (184)
T d1vg8a_          56 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-------  127 (184)
T ss_dssp             EEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-------
T ss_pred             eecCCcccccccccccccCccEEEEeecccchhhhhcc-hhhHHHHHHHhccccccCCCEEEEEEeecccccc-------
Confidence            89999999999999999999999999999999999998 89998886553     368999999999986643       


Q ss_pred             CCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           76 GLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                          +..++...++...+..+++++||++|.||.++|+.|++.+.++.
T Consensus       128 ----~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~i~~~~  171 (184)
T d1vg8a_         128 ----VATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE  171 (184)
T ss_dssp             ----SCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             ----hhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHHHHHHHHhcc
Confidence                37777777877665459999999999999999999999887643

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.2e-22  Score=135.68  Aligned_cols=108  Identities=23%  Similarity=0.293  Sum_probs=90.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeeCCCcccccccccCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPG   76 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piilv~nK~D~~~~~~~~~~~~~   76 (150)
                      |||+|++++.     |+++||++|+|||++++.||+.+ ..|+..+....    ++.|+++|+||.|+.....       
T Consensus        57 ~Dt~g~~~~~-----~~~~ad~~ilVfd~~~~~Sf~~~-~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~-------  123 (175)
T d2bmja1          57 REEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASSP-------  123 (175)
T ss_dssp             EECSSCCCHH-----HHHHCSEEEEEEETTCHHHHHHH-HHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSC-------
T ss_pred             eecccccccc-----cccccceeEEEeecccchhhhhh-HHHHHHHHHHhhcccCCccEEEEeeecCcchhhh-------
Confidence            9999998764     78899999999999999999998 88988876543    4689999999999754321       


Q ss_pred             CCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           77 LVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        77 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                       ..+...++..+++.....+|++|||++|.||+++|..+++.+...
T Consensus       124 -~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  168 (175)
T d2bmja1         124 -RVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTL  168 (175)
T ss_dssp             -CCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             -cchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHHHHHHHHHHHHh
Confidence             346788888887665444999999999999999999999998754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.82  E-value=1.7e-21  Score=133.40  Aligned_cols=107  Identities=10%  Similarity=0.103  Sum_probs=81.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh-C-CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~-~-~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|++.|..+++.++++++++++|||++++.++... ..|+..+.+. . .+.|+++|+||+|+.+..          
T Consensus        66 ~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~-~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~----------  134 (182)
T d1moza_          66 WDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGAL----------  134 (182)
T ss_dssp             EEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTCC----------
T ss_pred             EecccccccchhHHhhhccceeEEEEeeecccccchhH-HHHHHHHHHhhccCCcceEEEEEeecccccc----------
Confidence            89999999999999999999999999999999999988 5665554433 2 479999999999986532          


Q ss_pred             ccCHHHHHH-----HHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           79 PVTTAQGEE-----LRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        79 ~v~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                        ...++..     .+...++ ++++|||++|+||+++|+.|++.+.+
T Consensus       135 --~~~~i~~~~~~~~~~~~~~-~~~e~SA~~g~gv~e~~~~l~~~i~~  179 (182)
T d1moza_         135 --SASEVSKELNLVELKDRSW-SIVASSAIKGEGITEGLDWLIDVIKE  179 (182)
T ss_dssp             --CHHHHHHHTTTTTCCSSCE-EEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHHhhCCC-EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence              2233222     2233344 79999999999999999999988753

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.82  E-value=3.2e-20  Score=124.90  Aligned_cols=108  Identities=14%  Similarity=0.144  Sum_probs=85.5

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      |||+|++.+...++.+++.++++++|||+++..++......|...+.... .+.|+++|+||+|+.+...          
T Consensus        51 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------  120 (165)
T d1ksha_          51 WDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS----------  120 (165)
T ss_dssp             EEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC----------
T ss_pred             eecCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccC----------
Confidence            89999999999999999999999999999999999988555555554332 5799999999999875432          


Q ss_pred             cCHHHHHHHH-----HHcCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           80 VTTAQGEELR-----KQIGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        80 v~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                        ..+.....     ...++ +++++||++|.||.++|+.|++.+..
T Consensus       121 --~~~~~~~~~~~~~~~~~~-~~~~~Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         121 --CNAIQEALELDSIRSHHW-RIQGCSAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             --HHHHHHHTTGGGCCSSCE-EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHhhhhhcCCC-EEEEEECCCCCCHHHHHHHHHHHHHc
Confidence              23322221     12233 78999999999999999999988764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.82  E-value=2.6e-21  Score=130.44  Aligned_cols=110  Identities=17%  Similarity=0.216  Sum_probs=84.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|++.|...+..++..++++++|||++++.+++.. ..|+..+.+..  +++|+++|+||.|+.+....       .
T Consensus        52 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~-------~  123 (164)
T d1zd9a1          52 WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE-------K  123 (164)
T ss_dssp             EEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH-------H
T ss_pred             eeccccccccccccccccccchhhcccccccccccchh-hhhhhhhhhhhcccCCcEEEEEeccccchhhhH-------H
Confidence            89999999999999999999999999999999999998 66665554432  58999999999998754321       0


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      .+........++..++ +++++||++|.||+++|+.|++.+
T Consensus       124 ~i~~~~~~~~~~~~~~-~~~e~Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         124 ELIEKMNLSAIQDREI-CCYSISCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             HHHHHTTGGGCCSSCE-EEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCC-EEEEEeCcCCcCHHHHHHHHHHcc
Confidence            0111111122233444 889999999999999999998753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.81  E-value=6.2e-21  Score=129.61  Aligned_cols=105  Identities=11%  Similarity=0.151  Sum_probs=83.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-hC-CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH-YS-PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~-~~-~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      |||+|++.+...++.++++++++|+|||+++..++..+ ..|+....+ .. .+.|+++|+||+|+.+...         
T Consensus        61 ~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~-~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~---------  130 (173)
T d1e0sa_          61 WDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAMK---------  130 (173)
T ss_dssp             EEESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC---------
T ss_pred             ecCCCcchhhhHHHhhhcccceEEEEEecccchhHHHH-HHHHHHHhhhcccccceeeeeeeccccccccc---------
Confidence            89999999999999999999999999999999999998 555544443 22 5799999999999876432         


Q ss_pred             ccCHHHHHH-----HHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           79 PVTTAQGEE-----LRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        79 ~v~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                         ..+...     .+...++ .++++||++|+||.++|+.|.+.+
T Consensus       131 ---~~~i~~~~~~~~~~~~~~-~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         131 ---PHEIQEKLGLTRIRDRNW-YVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             ---HHHHHHHTTGGGCCSSCE-EEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             ---HHHHHHHHHHHHHHhCCC-EEEEeeCCCCcCHHHHHHHHHHhc
Confidence               222222     2223344 789999999999999999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.81  E-value=4.8e-21  Score=130.18  Aligned_cols=105  Identities=19%  Similarity=0.234  Sum_probs=83.8

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      ||++|++.|...++.+++.+|++|+|||++++.++..+ ..|...+....  .++|+++|+||+|+.+...         
T Consensus        65 ~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~-~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~---------  134 (176)
T d1fzqa_          65 WDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAAP---------  134 (176)
T ss_dssp             EECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC---------
T ss_pred             eeccccccchhHHHHHhhccceeEEeeccccccchhhh-hhhhhhhhhhhccCCCeEEEEEEecccccccc---------
Confidence            89999999999999999999999999999999999998 66665555433  4799999999999976432         


Q ss_pred             ccCHHHHHH-----HHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           79 PVTTAQGEE-----LRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        79 ~v~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                         .....+     .++..++ +++++||++|.||+++|++|++.+
T Consensus       135 ---~~~~~~~~~~~~~~~~~~-~~~~~SA~tg~gv~e~~~~l~~~i  176 (176)
T d1fzqa_         135 ---ASEIAEGLNLHTIRDRVW-QIQSCSALTGEGVQDGMNWVCKNV  176 (176)
T ss_dssp             ---HHHHHHHTTGGGCCSSCE-EEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             ---HHHHHHHHHHHHHHhcCC-EEEEEeCCCCCCHHHHHHHHHhcC
Confidence               222222     1222333 799999999999999999998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.73  E-value=1.3e-18  Score=115.61  Aligned_cols=110  Identities=11%  Similarity=0.125  Sum_probs=85.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      ||++|++.+...+..+++.+++++++||++++.++..+ ..|...+....  ...|+++++||.|+......       .
T Consensus        49 ~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~-------~  120 (160)
T d1r8sa_          49 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAMNA-------A  120 (160)
T ss_dssp             EECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-------H
T ss_pred             ecCCCcccchhhhhhhhccceeEEEEEEecChHHHHHH-HHHHHHHHHhhcccCceEEEEeecccccccccH-------H
Confidence            89999999999999999999999999999999999998 56655554333  46899999999998764321       0


Q ss_pred             ccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           79 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        79 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      .+.......+++..++ +++++||++|+||+++|+.|++++
T Consensus       121 ~i~~~~~~~~~~~~~~-~~~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         121 EITDKLGLHSLRHRNW-YIQATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             HHHHHTTGGGCSSCCE-EEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhCCC-EEEEeECCCCCCHHHHHHHHHhcC
Confidence            1111222233444555 899999999999999999998764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=7.3e-18  Score=114.65  Aligned_cols=107  Identities=14%  Similarity=0.109  Sum_probs=83.2

Q ss_pred             CCCCCcccccccc--------cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQEDYNRLR--------PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~~~~l~--------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||||+.......        ..++++||++|+|+|++++.+..+  ..|.+.++....+.|+++|+||+|+...     
T Consensus        58 ~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~--~~i~~~l~~~~~~~piilv~NK~Dl~~~-----  130 (178)
T d1wf3a1          58 VDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKY-----  130 (178)
T ss_dssp             EECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSS-----
T ss_pred             cccccccccccccchhcccccccccccccceeeeechhhhhcccc--cchhhheeccccchhhhhhhcccccccC-----
Confidence            7999986543322        345789999999999998776654  4677777776678999999999998653     


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                              ..+....+.+..+...++++||+++.|++++++.|++.+.+.
T Consensus       131 --------~~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~lpe~  172 (178)
T d1wf3a1         131 --------PEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEG  172 (178)
T ss_dssp             --------HHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCCBC
T ss_pred             --------HHHHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHHhCCCC
Confidence                    224445566666666899999999999999999999988653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=9.7e-17  Score=109.66  Aligned_cols=121  Identities=19%  Similarity=0.163  Sum_probs=81.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHH----------HHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE----------NVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKH   69 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~----------~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~   69 (150)
                      |||+||++|..+++.|+++++++++|||+++..++.          +....|...+.... .+.|+++++||+|+.....
T Consensus        47 ~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~  126 (195)
T d1svsa1          47 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKI  126 (195)
T ss_dssp             EEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHT
T ss_pred             eccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhc
Confidence            999999999999999999999999999999887652          22255666665443 5799999999999754322


Q ss_pred             ccc---CC--CCCCccCHHHHH-----HHHHHc-----CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           70 YLA---DH--PGLVPVTTAQGE-----ELRKQI-----GASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        70 ~~~---~~--~~~~~v~~~~~~-----~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      ...   ..  .........+..     ++....     +-..++++||+++.||+++|+.+.+.++.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         127 KKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             TTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence            100   00  000011122221     111110     11257789999999999999999887764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.60  E-value=5e-16  Score=104.76  Aligned_cols=105  Identities=12%  Similarity=0.135  Sum_probs=77.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      ||++|++.+...+..++..++++++++|.++..+++.. ..+.......  ..+.|+++|+||+|+....          
T Consensus        64 ~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------  132 (177)
T d1zj6a1          64 WDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKECM----------  132 (177)
T ss_dssp             EECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTCC----------
T ss_pred             eccccccccccchhhhhccceeeeeecccccccchhhh-hhhhhhhhhcccccceEEEEEEEcccccccC----------
Confidence            78999999999999999999999999999999999886 4444333322  2579999999999987543          


Q ss_pred             ccCHHHHHHHH-----HHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           79 PVTTAQGEELR-----KQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        79 ~v~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                        ...+.....     +..++ +++++||++|+||+++|+.|++.+
T Consensus       133 --~~~~i~~~~~~~~~~~~~~-~~~~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         133 --TVAEISQFLKLTSIKDHQW-HIQACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             --CHHHHHHHHTGGGCCSSCE-EEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             --cHHHHHHHHHHHhhHhcCC-EEEEEeCCCCCCHHHHHHHHHHHh
Confidence              223232222     22333 799999999999999999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.55  E-value=6.3e-15  Score=97.99  Aligned_cols=114  Identities=10%  Similarity=0.092  Sum_probs=85.2

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      ||++|.+.+......++..++++++++|+++..++......+...+.... .+.|+++|+||.|+......       ..
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~-------~~  126 (169)
T d1upta_          54 WDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS-------SE  126 (169)
T ss_dssp             EEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-------HH
T ss_pred             eeccccccccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccH-------HH
Confidence            68899999999999999999999999999998888877344444443322 57899999999999765321       00


Q ss_pred             cCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           80 VTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        80 v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      +.......++...++ +++++||++|.||+++|+.|++.+.++
T Consensus       127 i~~~~~~~~~~~~~~-~~~~~SA~~g~gv~e~~~~l~~~l~~k  168 (169)
T d1upta_         127 MANSLGLPALKDRKW-QIFKTSATKGTGLDEAMEWLVETLKSR  168 (169)
T ss_dssp             HHHHHTGGGCTTSCE-EEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhcCCC-EEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            111222233444454 899999999999999999999988643

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=8.9e-15  Score=100.03  Aligned_cols=120  Identities=16%  Similarity=0.134  Sum_probs=85.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChh-----------hHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA-----------SYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDK   68 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~-----------s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~   68 (150)
                      |||+||+.+..++..+++++++++++||.++..           .++.. ..|...+.... .++|+++++||.|+....
T Consensus        50 ~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~-~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~  128 (200)
T d2bcjq2          50 VDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESK-ALFRTIITYPWFQNSSVILFLNKKDLLEEK  128 (200)
T ss_dssp             EECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHH-HHHHHHHHCGGGSSSEEEEEEECHHHHHHH
T ss_pred             ccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHH-HHHHHHHhhhhccCccEEEecchhhhhhhc
Confidence            899999999999999999999999999998864           34444 78888876554 689999999999986543


Q ss_pred             cccc------CCCCCCccCHHHHHHHHH----Hc-----CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           69 HYLA------DHPGLVPVTTAQGEELRK----QI-----GASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        69 ~~~~------~~~~~~~v~~~~~~~~~~----~~-----~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      ....      .+....+-.......+..    ..     +-..++++||+++.||.++|+.+.+.+++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         129 IMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             TTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence            2200      000111112222222221    11     11247899999999999999999888874

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.51  E-value=1.7e-14  Score=97.73  Aligned_cols=109  Identities=16%  Similarity=0.148  Sum_probs=75.7

Q ss_pred             CCCCCcccccc----ccc---ccccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccc
Q 031970            1 MNVIGQEDYNR----LRP---LSYRGADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL   71 (150)
Q Consensus         1 wDt~G~e~~~~----l~~---~~~~~ad~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~   71 (150)
                      |||||..+-..    +..   ..+..++++++++|.....  +.... ..|+........+.|+++|+||+|+.....  
T Consensus        54 ~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~--  130 (180)
T d1udxa2          54 ADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETL-RKEVGAYDPALLRRPSLVALNKVDLLEEEA--  130 (180)
T ss_dssp             EECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHH-HHHHHHHCHHHHHSCEEEEEECCTTSCHHH--
T ss_pred             cCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhh-hhhhhccccccchhhhhhhhhhhhhhhHHH--
Confidence            89999543211    111   3467899999999987642  33333 344443333334689999999999976542  


Q ss_pred             cCCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           72 ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        72 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                                .+.........+. +++++||++|.||+++++.|.+.+...+
T Consensus       131 ----------~~~~~~~~~~~~~-~~~~iSA~tg~gid~L~~~i~~~l~~~~  171 (180)
T d1udxa2         131 ----------VKALADALAREGL-AVLPVSALTGAGLPALKEALHALVRSTP  171 (180)
T ss_dssp             ----------HHHHHHHHHTTTS-CEEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred             ----------HHHHHHHHHhcCC-eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence                      3445555566665 8999999999999999999999887544

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.48  E-value=5.2e-14  Score=95.55  Aligned_cols=110  Identities=17%  Similarity=0.137  Sum_probs=79.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      +|++|+.+|......++..+|++++|+|+.+....+..  .....+..  .++|+++|+||+|+......        ..
T Consensus        64 ~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~--~~~~~~~~--~~~p~iiv~NKiD~~~~~~~--------~~  131 (179)
T d1wb1a4          64 VDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTG--EHMLILDH--FNIPIIVVITKSDNAGTEEI--------KR  131 (179)
T ss_dssp             CCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHH--HHHHHHHH--TTCCBCEEEECTTSSCHHHH--------HH
T ss_pred             cccccccccccchhhhhhhccccccccccccccchhhh--hhhhhhhh--cCCcceeccccccccCHHHH--------HH
Confidence            69999999999888899999999999999987655442  23333333  27899999999998765321        00


Q ss_pred             CHHHHHHHHHHc-C--CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           81 TTAQGEELRKQI-G--ASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        81 ~~~~~~~~~~~~-~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      .......+.+.. +  ..+++++||++|.|++++++.++..+.+.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         132 TEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             HHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCcc
Confidence            112222333322 2  23789999999999999999999888654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.48  E-value=5.6e-14  Score=98.90  Aligned_cols=117  Identities=16%  Similarity=0.206  Sum_probs=77.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCC-----
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP-----   75 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~-----   75 (150)
                      .||||+++|...+...+..+|++|+|+|+.+....+..  ..+..+...  ++|+|+|.||+|+...........     
T Consensus        75 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~iivlNK~D~~~~~~~~~~~~~~~~~  150 (227)
T d1g7sa4          75 IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQ--EALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETF  150 (227)
T ss_dssp             ECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHH
T ss_pred             ccccceecccccchhcccccceEEEEEecccCcccchh--HHHHHhhcC--CCeEEEEEECccCCCchhhhhhHHHHHhh
Confidence            49999999999998999999999999999986655543  444444443  689999999999876542100000     


Q ss_pred             --CCCccCH---HHHH----HHHHH-------------cCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           76 --GLVPVTT---AQGE----ELRKQ-------------IGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        76 --~~~~v~~---~~~~----~~~~~-------------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                        ....+..   ....    .+...             .+..+++++||++|.|++++++.+.....+
T Consensus       151 ~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         151 SKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence              0000000   0111    11110             122478999999999999999998876643

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=5.1e-15  Score=98.41  Aligned_cols=100  Identities=12%  Similarity=0.202  Sum_probs=75.6

Q ss_pred             CCCCCccccccc--------ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccccccc
Q 031970            1 MNVIGQEDYNRL--------RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA   72 (150)
Q Consensus         1 wDt~G~e~~~~l--------~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~   72 (150)
                      |||+|..+....        ...++.++|++++++|..+..+++.. ..|...+.....+.|+++|+||+|+.+..... 
T Consensus        54 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~-  131 (161)
T d2gj8a1          54 IDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAKLPITVVRNKADITGETLGM-  131 (161)
T ss_dssp             EECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHH-HHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE-
T ss_pred             ccccccccccccchhHHHHHHHHHHHhccccceeeccccccchhhh-hhhhhhhhhcccccceeeccchhhhhhhHHHH-
Confidence            688886554321        23467899999999999998888776 66666666666689999999999987653310 


Q ss_pred             CCCCCCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           73 DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        73 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                                       +..+..+++++||+++.||+++++.|++.+
T Consensus       132 -----------------~~~~~~~~~~iSAk~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         132 -----------------SEVNGHALIRLSARTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             -----------------EEETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred             -----------------HHhCCCcEEEEECCCCCCHHHHHHHHHhhC
Confidence                             112234899999999999999999998764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=3.8e-13  Score=88.57  Aligned_cols=103  Identities=16%  Similarity=0.193  Sum_probs=79.0

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeeCCCcccccccccCCCCCC
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLV   78 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~D~~~~~~~~~~~~~~~   78 (150)
                      ||++|...+...++.++..++++++++|.++..++... ..|........  .+.|+++++||.|+....          
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~----------  117 (166)
T d2qtvb1          49 FDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPNAV----------  117 (166)
T ss_dssp             EECCCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHH-HHHHHHHHTCTTTTTCCEEEEEECTTSSSCC----------
T ss_pred             EeeccchhhhhhHhhhhhheeeeeeeccccchhhhhhh-hHHHHhhhhhhccCCceEEEEeccccccccC----------
Confidence            79999999999999999999999999999999999887 44544444333  479999999999986542          


Q ss_pred             ccCHHHHHHHH------------HHcCCcEEEEeccCCCCCHHHHHHHHHH
Q 031970           79 PVTTAQGEELR------------KQIGASYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        79 ~v~~~~~~~~~------------~~~~~~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                        ...+.....            .... .++++|||++|+||+++|+.|.+
T Consensus       118 --~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         118 --SEAELRSALGLLNTTGSQRIEGQRP-VEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             --CHHHHHHHHTCSSCCC---CCSSCC-EEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             --CHHHHHHHhhhhhhhHHHhhcccCC-CEEEEeeCCCCCCHHHHHHHHhC
Confidence              222222111            1112 37899999999999999999864

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=1.3e-13  Score=94.29  Aligned_cols=120  Identities=15%  Similarity=0.146  Sum_probs=72.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA----------SYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKH   69 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~----------s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~   69 (150)
                      |||+||+.+...+..+++++++++++||.++..          .++.....|...+.... .++|++|++||.|+.+...
T Consensus        49 ~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~  128 (200)
T d1zcba2          49 VDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKV  128 (200)
T ss_dssp             EEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHT
T ss_pred             ecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhc
Confidence            899999999999999999999999999999853          33444233333333322 5899999999999865422


Q ss_pred             ccc---C---CCCCCccCHHHHHHHHHH-----------cCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           70 YLA---D---HPGLVPVTTAQGEELRKQ-----------IGASYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        70 ~~~---~---~~~~~~v~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      ...   +   +.....-....+..+...           ..+ .++++||+++.||.++|+.+...++.
T Consensus       129 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i-y~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         129 QVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPL-YHHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             TTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CC-EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCce-EEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence            100   0   000111122233322221           122 46689999999999999998887764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.45  E-value=3.1e-13  Score=90.86  Aligned_cols=106  Identities=13%  Similarity=0.133  Sum_probs=77.4

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      ||+.|+..+...+..+++.++++++++|.++...+......+........ .+.|+++++||.|+....           
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~-----------  130 (186)
T d1f6ba_          62 FDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI-----------  130 (186)
T ss_dssp             EEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC-----------
T ss_pred             ccccchhhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccC-----------
Confidence            78899999999999999999999999999999988887444444443332 589999999999986542           


Q ss_pred             cCHHHHHHHHHH-----------------cCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           80 VTTAQGEELRKQ-----------------IGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        80 v~~~~~~~~~~~-----------------~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                       ...........                 .++ ++++|||++|+||+++|+.|++++
T Consensus       131 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         131 -SEERLREMFGLYGQTTGKGSVSLKELNARPL-EVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             -CHHHHHHHHTCTTTCCCSSCCCTTTCCSCCE-EEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             -CHHHHHHHHhhcccchhhhhhhHHHhhcCCC-EEEEEeCCCCCCHHHHHHHHHHhh
Confidence             22333332221                 122 689999999999999999998754

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.45  E-value=6e-14  Score=94.24  Aligned_cols=92  Identities=16%  Similarity=0.137  Sum_probs=68.0

Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCC
Q 031970           15 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA   94 (150)
Q Consensus        15 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   94 (150)
                      .++..+|+++++.|.+.....+.  ..++..+...  ++|+++|+||+|+....            . .+........+.
T Consensus        76 ~~~~~ad~i~~~~~~~~~~~~~~--~~~~~~l~~~--~~pviiv~NK~Dl~~~~------------~-~~~~~~~~~~~~  138 (171)
T d1mkya1          76 NMIREADLVLFVVDGKRGITKED--ESLADFLRKS--TVDTILVANKAENLREF------------E-REVKPELYSLGF  138 (171)
T ss_dssp             HHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHHH--TCCEEEEEESCCSHHHH------------H-HHTHHHHGGGSS
T ss_pred             cccccCcEEEEeecccccccccc--cccccccccc--cccccccchhhhhhhhh------------h-hHHHHHHHhcCC
Confidence            35678999999999988776655  4566666654  68999999999987542            1 222222233444


Q ss_pred             cEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           95 SYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        95 ~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                      .+++++||++|.|++++++.|++.+.++.
T Consensus       139 ~~~i~iSAk~g~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         139 GEPIPVSAEHNINLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             CSCEECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred             CCeEEEecCCCCCHHHHHHHHHHhCCCCC
Confidence            57899999999999999999999886543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.41  E-value=3.5e-13  Score=93.31  Aligned_cols=111  Identities=13%  Similarity=0.056  Sum_probs=75.4

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccC
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT   81 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~   81 (150)
                      ||||+++|.......+..||++|+|.|+.+...-... .+.+..+.. ..-.|+|++.||+|+.+....        ...
T Consensus        92 D~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t-~e~~~~~~~-~~i~~iIV~vNK~Dl~~~~~~--------~~~  161 (205)
T d2qn6a3          92 DAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGI-IGVKNLIIVQNKVDVVSKEEA--------LSQ  161 (205)
T ss_dssp             ECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHH-HHHHHHHHH-TTCCCEEEEEECGGGSCHHHH--------HHH
T ss_pred             ccchHHHHHhhhhcceeccccccccccccccccchhH-HHHHHHHHH-cCCceeeeccccCCCccchHH--------HHH
Confidence            8999999988887888899999999999885312221 122222222 223588999999999765421        001


Q ss_pred             HHHHHHHHHHcC--CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           82 TAQGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        82 ~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ......+.....  -.+++++||++|.||+++++.+..++..|
T Consensus       162 ~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~P  204 (205)
T d2qn6a3         162 YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP  204 (205)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCCC
Confidence            122223333222  13799999999999999999999988764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.32  E-value=2.2e-12  Score=88.44  Aligned_cols=110  Identities=14%  Similarity=0.092  Sum_probs=74.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      .||||+++|.......+..+|++++|.|+.+....... .+.+..+... .-.++|++.||+|+.+....        ..
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t-~e~~~~~~~~-~~~~iiv~inK~D~~d~~~~--------~~  152 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQT-REHLMALQII-GQKNIIIAQNKIELVDKEKA--------LE  152 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHH-HHHHHHHHHH-TCCCEEEEEECGGGSCHHHH--------HH
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhh-HHHHHHHHHh-cCccceeeeecccchhhHHH--------HH
Confidence            39999999999888889999999999999986422222 2222222222 12458889999998765321        00


Q ss_pred             CHHHHHHHHHHcCC--cEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           81 TTAQGEELRKQIGA--SYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        81 ~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                      .......+...++.  .+++++||++|.|++++++.+.+.+.
T Consensus       153 ~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         153 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            12233344433321  37899999999999999999988663

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.30  E-value=4.3e-12  Score=85.55  Aligned_cols=92  Identities=16%  Similarity=0.176  Sum_probs=60.4

Q ss_pred             ccccCCcEEEEEEeCCChhhHHHHH---------HHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHH
Q 031970           15 LSYRGADVFVLAFSLVSRASYENVL---------KKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG   85 (150)
Q Consensus        15 ~~~~~ad~~i~v~d~~~~~s~~~~~---------~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~   85 (150)
                      ..++.+|++++|+|.+.+.......         ..+.+.+..  .+.|+++|+||+|+.+...             ...
T Consensus        77 ~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~--~~~p~iiv~NK~D~~~~~~-------------~~~  141 (184)
T d2cxxa1          77 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNVQ-------------EVI  141 (184)
T ss_dssp             HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCHH-------------HHH
T ss_pred             hcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH--cCCCEEEEEeeeehhhhHH-------------HHH
Confidence            4567899999999998654332210         122333333  2789999999999875321             222


Q ss_pred             HHHHHHcCC------cEEEEeccCCCCCHHHHHHHHHHHHhC
Q 031970           86 EELRKQIGA------SYYIECSSKTQQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        86 ~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~~l~~~~~~  121 (150)
                      ..+...++.      ..++++||++|.||+++++.|.+.+.+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         142 NFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             HHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            222222221      248899999999999999999988764

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.26  E-value=3e-12  Score=84.58  Aligned_cols=82  Identities=12%  Similarity=0.135  Sum_probs=59.9

Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcE
Q 031970           17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY   96 (150)
Q Consensus        17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~   96 (150)
                      +..+|++++|+|++++...+..  .+...+    ...|+++++||.|+.+..            ..++..... ... .+
T Consensus        78 ~~~ad~ii~v~d~~~~~~~~~~--~~~~~~----~~~~~i~~~~k~d~~~~~------------~~~~~~~~~-~~~-~~  137 (160)
T d1xzpa2          78 IEKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEKI------------NEEEIKNKL-GTD-RH  137 (160)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCCC------------CHHHHHHHH-TCS-TT
T ss_pred             HHhCCEEEEEEeCCCCcchhhh--hhhhhc----ccccceeeeeeccccchh------------hhHHHHHHh-CCC-Cc
Confidence            5789999999999998877654  333333    357999999999987643            223322211 123 37


Q ss_pred             EEEeccCCCCCHHHHHHHHHHH
Q 031970           97 YIECSSKTQQNVKAVFDAAIKV  118 (150)
Q Consensus        97 ~~~~Sa~~~~~i~~~~~~l~~~  118 (150)
                      ++++||++|.||+++++.|.+.
T Consensus       138 ~~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         138 MVKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             EEEEEGGGTCCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            9999999999999999998764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.25  E-value=1.8e-11  Score=82.64  Aligned_cols=105  Identities=20%  Similarity=0.172  Sum_probs=69.4

Q ss_pred             CCCCCcccccccc------------cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccccc
Q 031970            1 MNVIGQEDYNRLR------------PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK   68 (150)
Q Consensus         1 wDt~G~e~~~~l~------------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~   68 (150)
                      +||+|......+.            ..+++.+|++++|+|++.+...+.  ..+...+...  +.|+|+|+||+|+....
T Consensus        61 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~~--~~~~~~~~~~--~~~~i~v~nK~D~~~~~  136 (186)
T d1mkya2          61 VDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQD--QRMAGLMERR--GRASVVVFNKWDLVVHR  136 (186)
T ss_dssp             SSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCEEEEEEECGGGSTTG
T ss_pred             eccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccccchhhH--HHHHHHHHHc--CCceeeeccchhhhcch
Confidence            5888865433322            224678999999999988765554  3555555543  68999999999987544


Q ss_pred             ccccCCCCCCccCHHHHHHHHH----HcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           69 HYLADHPGLVPVTTAQGEELRK----QIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        69 ~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      ..          ...+..+...    ..+..+++++||++|.|++++++.|.+.+
T Consensus       137 ~~----------~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~  181 (186)
T d1mkya2         137 EK----------RYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAY  181 (186)
T ss_dssp             GG----------CHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hh----------hhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            32          2333333222    23455899999999999999999996654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.24  E-value=2.6e-12  Score=88.39  Aligned_cols=111  Identities=17%  Similarity=0.114  Sum_probs=78.7

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      .||||+++|.......+..+|++++|+|+.+...-+..  +.+..+... ...|+|++.||+|+......       -+.
T Consensus        71 iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~QT~--~~~~~a~~~-~~~~iIv~iNK~D~~~~~~~-------~~~  140 (196)
T d1d2ea3          71 TDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTR--EHLLLARQI-GVEHVVVYVNKADAVQDSEM-------VEL  140 (196)
T ss_dssp             EECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHH--HHHHHHHHT-TCCCEEEEEECGGGCSCHHH-------HHH
T ss_pred             ecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCchhHH--HHHHHHHHh-cCCcEEEEEecccccccHHH-------HHH
Confidence            39999999998888889999999999999986554432  223233332 23589999999998754221       001


Q ss_pred             CHHHHHHHHHHcCC----cEEEEeccCCC----------CCHHHHHHHHHHHHhC
Q 031970           81 TTAQGEELRKQIGA----SYYIECSSKTQ----------QNVKAVFDAAIKVVIK  121 (150)
Q Consensus        81 ~~~~~~~~~~~~~~----~~~~~~Sa~~~----------~~i~~~~~~l~~~~~~  121 (150)
                      ...++..+...++.    .+++++||++|          .++.++++.+.+++..
T Consensus       141 i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP~  195 (196)
T d1d2ea3         141 VELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (196)
T ss_dssp             HHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCCC
Confidence            23355566666654    57999999998          5889999988877653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.22  E-value=1e-11  Score=86.74  Aligned_cols=121  Identities=16%  Similarity=0.185  Sum_probs=78.9

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhhC-CCCCEEEEeeCCCcccccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRA----------SYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKH   69 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~----------s~~~~~~~~~~~i~~~~-~~~piilv~nK~D~~~~~~   69 (150)
                      ||++||+.++..|..++.+++++++|+|.++..          ...+.+..|...+.... .++|++|++||+|+.+...
T Consensus        52 ~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~  131 (221)
T d1azta2          52 FDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKV  131 (221)
T ss_dssp             EECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHH
T ss_pred             EecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhh
Confidence            899999999999999999999999999998632          23333244555554433 5799999999999865432


Q ss_pred             c------------ccC----CCC----CCccCHHHHH-----HHHHHc-------CCcEEEEeccCCCCCHHHHHHHHHH
Q 031970           70 Y------------LAD----HPG----LVPVTTAQGE-----ELRKQI-------GASYYIECSSKTQQNVKAVFDAAIK  117 (150)
Q Consensus        70 ~------------~~~----~~~----~~~v~~~~~~-----~~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~l~~  117 (150)
                      .            .+.    ...    ........+.     ++.+..       ....+.++||.+..+|..+|+.+..
T Consensus       132 ~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d  211 (221)
T d1azta2         132 LAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRD  211 (221)
T ss_dssp             HHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHH
T ss_pred             ccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHH
Confidence            1            000    000    0001112222     222211       1113568999999999999999877


Q ss_pred             HHhC
Q 031970          118 VVIK  121 (150)
Q Consensus       118 ~~~~  121 (150)
                      .|+.
T Consensus       212 ~I~~  215 (221)
T d1azta2         212 IIQR  215 (221)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.17  E-value=1.8e-11  Score=82.75  Aligned_cols=109  Identities=12%  Similarity=0.176  Sum_probs=67.1

Q ss_pred             CCCCCcccccccc----cc---cccCCcEEEEEEeCCChhhH---HHH--HHHHHHHHhhhCCCCCEEEEeeCCCccccc
Q 031970            1 MNVIGQEDYNRLR----PL---SYRGADVFVLAFSLVSRASY---ENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDK   68 (150)
Q Consensus         1 wDt~G~e~~~~l~----~~---~~~~ad~~i~v~d~~~~~s~---~~~--~~~~~~~i~~~~~~~piilv~nK~D~~~~~   68 (150)
                      |||||..+.....    ..   .+..++.++++.+.......   +..  ...+.........++|+++|+||+|+....
T Consensus        54 ~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~  133 (185)
T d1lnza2          54 ADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA  133 (185)
T ss_dssp             EEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH
T ss_pred             ecCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH
Confidence            7999964432221    11   24568888888876653321   111  011111111222368999999999987532


Q ss_pred             ccccCCCCCCccCHHHHHHHHHHcC-CcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 031970           69 HYLADHPGLVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVIKPP  123 (150)
Q Consensus        69 ~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~  123 (150)
                                    .....+.+.++ ..+++++||++|.|++++++.+++.+.+.+
T Consensus       134 --------------~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~~~p  175 (185)
T d1lnza2         134 --------------ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTP  175 (185)
T ss_dssp             --------------HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred             --------------HHHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHhhhhCC
Confidence                          23333444332 237899999999999999999999986544

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.14  E-value=2.5e-10  Score=77.65  Aligned_cols=89  Identities=20%  Similarity=0.271  Sum_probs=63.9

Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHc---
Q 031970           16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI---   92 (150)
Q Consensus        16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---   92 (150)
                      .+..++++++|+|++.+...++  .++++.+...  ++|+++|+||+|+.+...           ..+....+.+.+   
T Consensus       102 ~~~~~~~vi~viD~~~~~~~~~--~~~~~~l~~~--~~piivv~NK~D~~~~~~-----------~~~~~~~~~~~l~~~  166 (195)
T d1svia_         102 TREELKAVVQIVDLRHAPSNDD--VQMYEFLKYY--GIPVIVIATKADKIPKGK-----------WDKHAKVVRQTLNID  166 (195)
T ss_dssp             HCTTEEEEEEEEETTSCCCHHH--HHHHHHHHHT--TCCEEEEEECGGGSCGGG-----------HHHHHHHHHHHHTCC
T ss_pred             cccchhhhhhhhhccccccccc--cccccccccc--cCcceechhhccccCHHH-----------HHHHHHHHHHHhccc
Confidence            4456899999999987665444  3566666554  689999999999865432           223333333332   


Q ss_pred             CCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           93 GASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        93 ~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      ...+++++||++|.|++++++.|.+.+
T Consensus       167 ~~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         167 PEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            334799999999999999999998875

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=1.6e-10  Score=79.27  Aligned_cols=66  Identities=12%  Similarity=0.174  Sum_probs=49.7

Q ss_pred             CCCCCccccc-ccccccccCCcEEEEEEeCCChhhH-HHHHHHHHHHH-h---hhCCCCCEEEEeeCCCcccc
Q 031970            1 MNVIGQEDYN-RLRPLSYRGADVFVLAFSLVSRASY-ENVLKKWIPEL-Q---HYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G~e~~~-~l~~~~~~~ad~~i~v~d~~~~~s~-~~~~~~~~~~i-~---~~~~~~piilv~nK~D~~~~   67 (150)
                      ||++|++++. ..+..++..++++++|+|+++..++ .+. .+|+..+ .   ....++|+++|+||+|+...
T Consensus        52 ~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~-~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          52 IDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDV-AEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             EECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHH-HHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             eeccccccccchhhhhhhhhccccceEEEcccccccHHHH-HHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            8999999885 5677889999999999999997764 343 3333332 2   22346899999999999764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=5.2e-10  Score=74.71  Aligned_cols=96  Identities=16%  Similarity=0.129  Sum_probs=70.4

Q ss_pred             cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHH
Q 031970           12 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ   91 (150)
Q Consensus        12 l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~   91 (150)
                      ........+++++++.|..+......   .+...+.+  ...|+++|.||.|+......          .......+...
T Consensus        78 ~~~~~~~~~~~~l~~~d~~~~~~~~~---~~~~~l~~--~~~~~i~v~~k~d~~~~~~~----------~~~~~~~~~~~  142 (179)
T d1egaa1          78 AASSSIGDVELVIFVVEGTRWTPDDE---MVLNKLRE--GKAPVILAVNKVDNVQEKAD----------LLPHLQFLASQ  142 (179)
T ss_dssp             CTTSCCCCEEEEEEEEETTCCCHHHH---HHHHHHHS--SSSCEEEEEESTTTCCCHHH----------HHHHHHHHHTT
T ss_pred             ccccchhhcceeEEEEecCccchhHH---HHHHHhhh--ccCceeeeeeeeeccchhhh----------hhhHhhhhhhh
Confidence            34445667889999999886544432   23333333  35789999999998775432          44566677777


Q ss_pred             cCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 031970           92 IGASYYIECSSKTQQNVKAVFDAAIKVVIKP  122 (150)
Q Consensus        92 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~  122 (150)
                      ++..+++++||++|.|++++++.+++.+.+.
T Consensus       143 ~~~~~~~~vSA~~g~gi~~L~~~i~~~lpe~  173 (179)
T d1egaa1         143 MNFLDIVPISAETGLNVDTIAAIVRKHLPEA  173 (179)
T ss_dssp             SCCSEEEECCTTTTTTHHHHHHHHHTTCCBC
T ss_pred             cCCCCEEEEeCcCCCCHHHHHHHHHHhCCCC
Confidence            8877999999999999999999999887554

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.95  E-value=6.1e-10  Score=77.71  Aligned_cols=98  Identities=15%  Similarity=0.150  Sum_probs=67.5

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCCCcc
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPV   80 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~v   80 (150)
                      ||||++.|..........+|++|+|.|+.....-+.. +.+ ..+...  ++| +|++.||.|+.+....      .-..
T Consensus        95 D~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~-e~~-~~~~~~--gv~~iiv~vNK~D~~~~~~~------~~~~  164 (222)
T d1zunb3          95 DTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR-RHS-YIASLL--GIKHIVVAINKMDLNGFDER------VFES  164 (222)
T ss_dssp             ECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-HHH-HHHHHT--TCCEEEEEEECTTTTTSCHH------HHHH
T ss_pred             eccchhhhhhhhccccccCceEEEEeccccCcccchH-HHH-HHHHHc--CCCEEEEEEEccccccccce------ehhh
Confidence            9999999999888889999999999999986544432 222 222222  444 8899999999764321      0001


Q ss_pred             CHHHHHHHHHHcCC----cEEEEeccCCCCCHH
Q 031970           81 TTAQGEELRKQIGA----SYYIECSSKTQQNVK  109 (150)
Q Consensus        81 ~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~  109 (150)
                      ...++..+.+..+.    .+++++||.+|.|+.
T Consensus       165 ~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         165 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             hHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            22345556666544    367999999999884

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.89  E-value=4.8e-10  Score=77.27  Aligned_cols=93  Identities=18%  Similarity=0.181  Sum_probs=63.1

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccCCCCCCc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVP   79 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~~~~~~~   79 (150)
                      .||||+++|.......++.||++|+|+|+.+....+.. +.| ..+...  ++| ++++.||+|+.+....       -.
T Consensus        72 iDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~-~~~-~~~~~~--gi~~iiv~iNK~D~~~~~~~-------~~  140 (204)
T d2c78a3          72 VDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTR-EHI-LLARQV--GVPYIVVFMNKVDMVDDPEL-------LD  140 (204)
T ss_dssp             EECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHH-HHH-HHHHHT--TCCCEEEEEECGGGCCCHHH-------HH
T ss_pred             EeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHH-HHH-HHHHHc--CCCeEEEEEEecccCCCHHH-------HH
Confidence            39999999999888899999999999999988777654 334 333332  566 6778999998653210       00


Q ss_pred             cCHHHHHHHHHHcCC----cEEEEeccCC
Q 031970           80 VTTAQGEELRKQIGA----SYYIECSSKT  104 (150)
Q Consensus        80 v~~~~~~~~~~~~~~----~~~~~~Sa~~  104 (150)
                      ....++..+...++.    .++++.||..
T Consensus       141 ~~~~~i~~~l~~~~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         141 LVEMEVRDLLNQYEFPGDEVPVIRGSALL  169 (204)
T ss_dssp             HHHHHHHHHHHHTTSCTTTSCEEECCHHH
T ss_pred             HHHHHHHHHHHhcCCCcccceeeeeechh
Confidence            122344455554433    4678888753

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.82  E-value=3.2e-09  Score=73.96  Aligned_cols=103  Identities=15%  Similarity=0.114  Sum_probs=65.1

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHH------HHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCC
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE------NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP   75 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~------~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~   75 (150)
                      |||||++|.......++-+|++|+|+|+.+...-+      .. .+-+ .+.......++|++.||.|+.......    
T Consensus        87 DtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt-~e~l-~~~~~~~~~~iIv~iNK~D~~~~~~~~----  160 (224)
T d1jnya3          87 DAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQT-REHI-ILAKTMGLDQLIVAVNKMDLTEPPYDE----  160 (224)
T ss_dssp             CCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHH-HHHH-HHHHHTTCTTCEEEEECGGGSSSTTCH----
T ss_pred             eCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchh-HHHH-HHHHHhCCCceEEEEEcccCCCccccH----
Confidence            99999999999999999999999999999853211      11 1111 111122235789999999987532100    


Q ss_pred             CCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHH
Q 031970           76 GLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA  110 (150)
Q Consensus        76 ~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  110 (150)
                      .........+..+...++.    .+++++||..|.|+.+
T Consensus       161 ~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         161 KRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            0000122344455555432    3689999999998853

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.79  E-value=5.1e-09  Score=74.97  Aligned_cols=115  Identities=15%  Similarity=0.118  Sum_probs=77.1

Q ss_pred             cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcC
Q 031970           14 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG   93 (150)
Q Consensus        14 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   93 (150)
                      ...++.+|++|+|.|+.+|.+..+-  . +..+.   .+.|+|+|.||+|+.+..            .......+.+..+
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~~--~-l~~~~---~~Kp~IlVlNK~DLv~~~------------~~~~w~~~f~~~~   71 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRNP--M-IEDIL---KNKPRIMLLNKADKADAA------------VTQQWKEHFENQG   71 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSCH--H-HHHHC---SSSCEEEEEECGGGSCHH------------HHHHHHHHHHTTT
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCCH--H-HHHHH---cCCCeEEEEECccCCchH------------HHHHHHHHHHhcC
Confidence            3468899999999999998877642  2 22222   368999999999998643            3344455555555


Q ss_pred             CcEEEEeccCCCCCHHHHHHHHHHHHhCCCcchhhhhccCCCceeeeecCccccc
Q 031970           94 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLNVFCGRNLVR  148 (150)
Q Consensus        94 ~~~~~~~Sa~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  148 (150)
                      . ..+.+|+.++.++.++...+...+.+...... .+.-.....-+...|+|.|.
T Consensus        72 ~-~~i~isa~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~v~vvG~PNvG  124 (273)
T d1puja_          72 I-RSLSINSVNGQGLNQIVPASKEILQEKFDRMR-AKGVKPRAIRALIIGIPNVG  124 (273)
T ss_dssp             C-CEEECCTTTCTTGGGHHHHHHHHHHHHHHHHH-HTTCCCCCEEEEEEESTTSS
T ss_pred             C-ccceeecccCCCccccchhhhhhhhhhhhhhh-hccCCCCceEEEEEecCccc
Confidence            5 78999999999999988888776654321111 11122334555567777663

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.78  E-value=1.5e-08  Score=71.46  Aligned_cols=101  Identities=22%  Similarity=0.170  Sum_probs=54.1

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhhCCCC-CEEEEeeCCCccccccc
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHYSPGV-PVVLVGTKLDLREDKHY   70 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~----------~s~~~~~~~~~~~i~~~~~~~-piilv~nK~D~~~~~~~   70 (150)
                      ||||+..|.........-+|++++|.|+.+.          .+.+.+     ..+...  ++ +++++.||.|+......
T Consensus       108 DtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l-----~l~~~~--~i~~iiv~iNKmD~~~~~~~  180 (245)
T d1r5ba3         108 DAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-----VLARTQ--GINHLVVVINKMDEPSVQWS  180 (245)
T ss_dssp             CCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-----HHHHHT--TCSSEEEEEECTTSTTCSSC
T ss_pred             cccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHH-----HHHHHc--CCCeEEEEEEcCCCCccchh
Confidence            9999999999999999999999999999874          233332     122221  34 47899999998753210


Q ss_pred             ccCCCCCCccCHHHHHHHHHHc-CC-----cEEEEeccCCCCCHHHHHH
Q 031970           71 LADHPGLVPVTTAQGEELRKQI-GA-----SYYIECSSKTQQNVKAVFD  113 (150)
Q Consensus        71 ~~~~~~~~~v~~~~~~~~~~~~-~~-----~~~~~~Sa~~~~~i~~~~~  113 (150)
                      ..    .-....+++..+.... +.     .+++++||++|.||.++++
T Consensus       181 e~----~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         181 EE----RYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             HH----HHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             HH----HHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            00    0000112223332332 21     3799999999999976544

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.72  E-value=2.7e-08  Score=71.20  Aligned_cols=62  Identities=19%  Similarity=0.300  Sum_probs=51.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCccc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE   66 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~   66 (150)
                      .||||+.+|.......++-+|++|+|+|+.+....+-. .-|. ...+.  ++|.|++.||.|...
T Consensus        76 iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~-~~w~-~a~~~--~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          76 IDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWR-QAEKY--KVPRIAFANKMDKTG  137 (276)
T ss_dssp             ECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHH-HHHH-HHHTT--TCCEEEEEECTTSTT
T ss_pred             ecCCchhhhHHHHHHHHHhhhheEEeccccCCcchhHH-HHHH-HHHHc--CCCEEEEEecccccc
Confidence            49999999999999999999999999999998777654 4453 33333  799999999999754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.70  E-value=1.2e-08  Score=72.81  Aligned_cols=61  Identities=23%  Similarity=0.306  Sum_probs=50.3

Q ss_pred             CCCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcc
Q 031970            1 MNVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR   65 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~   65 (150)
                      +||||+.+|.......++-+|++|+|+|+.+....+-. ..|. ...+.  ++|.+++.||.|..
T Consensus        72 iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~-~~~~-~~~~~--~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          72 LDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWT-VAERL--GLPRMVVVTKLDKG  132 (267)
T ss_dssp             EECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHH-HHHHT--TCCEEEEEECGGGC
T ss_pred             EccCchhhhhhhhhhhhcccCceEEEeeccCCccchhH-HHHH-hhhhc--cccccccccccccc
Confidence            49999999999888999999999999999987776654 4443 34433  69999999999974

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=2.1e-08  Score=70.42  Aligned_cols=99  Identities=13%  Similarity=0.089  Sum_probs=64.9

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhh-------HHHHHHHHHHHHhhhCCCCC-EEEEeeCCCcccccccccC
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRAS-------YENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLAD   73 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s-------~~~~~~~~~~~i~~~~~~~p-iilv~nK~D~~~~~~~~~~   73 (150)
                      |||||.+|..........+|++|+|+|+.....       .+-. +.|. .....  ++| +|++.||.|+.+....   
T Consensus        90 DtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~-eh~~-~~~~~--gv~~iiv~iNKmD~~~~d~~---  162 (239)
T d1f60a3          90 DAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR-EHAL-LAFTL--GVRQLIVAVNKMDSVKWDES---  162 (239)
T ss_dssp             ECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH-HHHH-HHHHT--TCCEEEEEEECGGGGTTCHH---
T ss_pred             ECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHH-HHHH-HHHHc--CCCeEEEEEECCCCCCCCHH---
Confidence            999999999988889999999999999986421       1111 2221 22221  455 7889999998764321   


Q ss_pred             CCCCCccCHHHHHHHHHHcCC----cEEEEeccCCCCCHHH
Q 031970           74 HPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA  110 (150)
Q Consensus        74 ~~~~~~v~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  110 (150)
                         .-.....+...+....+.    .+++++|+..|.|+.+
T Consensus       163 ---~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         163 ---RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             ---HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             ---HHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence               000122444555555553    3689999999988744

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.50  E-value=3.4e-07  Score=63.48  Aligned_cols=88  Identities=15%  Similarity=0.191  Sum_probs=62.9

Q ss_pred             cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcC
Q 031970           14 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG   93 (150)
Q Consensus        14 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   93 (150)
                      +-...+.|.+++|+++.+|..-...+++|+-.....  ++|.++|.||+|+.+..            .......+...+.
T Consensus         5 RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~--~i~pvIvlnK~DL~~~~------------~~~~~~~~~~~~~   70 (225)
T d1u0la2           5 KPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN--ELETVMVINKMDLYDED------------DLRKVRELEEIYS   70 (225)
T ss_dssp             TTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT--TCEEEEEECCGGGCCHH------------HHHHHHHHHHHHT
T ss_pred             CCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc--CCCEEEEEeCcccCCHH------------HHHHHHHhhcccc
Confidence            345678999999999988764333347777655543  89999999999997643            2233334444332


Q ss_pred             -CcEEEEeccCCCCCHHHHHHHH
Q 031970           94 -ASYYIECSSKTQQNVKAVFDAA  115 (150)
Q Consensus        94 -~~~~~~~Sa~~~~~i~~~~~~l  115 (150)
                       .-+++.+||+++.|++++...+
T Consensus        71 ~~~~v~~vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          71 GLYPIVKTSAKTGMGIEELKEYL   93 (225)
T ss_dssp             TTSCEEECCTTTCTTHHHHHHHH
T ss_pred             cceeEEEeccccchhHhhHHHHh
Confidence             2378999999999999988765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=2.1e-07  Score=62.98  Aligned_cols=67  Identities=6%  Similarity=0.085  Sum_probs=46.7

Q ss_pred             CCCCCcccccccccccc----cCCcEEEEEEeCCC-hhhHHHHHHHHHH----HHhhhC-CCCCEEEEeeCCCccccc
Q 031970            1 MNVIGQEDYNRLRPLSY----RGADVFVLAFSLVS-RASYENVLKKWIP----ELQHYS-PGVPVVLVGTKLDLREDK   68 (150)
Q Consensus         1 wDt~G~e~~~~l~~~~~----~~ad~~i~v~d~~~-~~s~~~~~~~~~~----~i~~~~-~~~piilv~nK~D~~~~~   68 (150)
                      |||||++++...+..++    ..++.+++++|..+ ..+++.. ..|+.    .+.... .+.|+++|+||+|+.+..
T Consensus        51 ~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          51 VDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             EecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHH-HHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            89999998877665544    45588888888775 4555555 44433    333333 479999999999987643

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.33  E-value=2.3e-07  Score=68.16  Aligned_cols=62  Identities=15%  Similarity=0.104  Sum_probs=51.5

Q ss_pred             CCCCcccccccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970            2 NVIGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      ||||+.+|.......++-+|++|+|+|+......+.. .-|......   +.|++++.||+|....
T Consensus       102 DtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~-~~~~~a~~~---~~p~i~viNKiDr~~~  163 (341)
T d1n0ua2         102 DSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALGE---RIKPVVVINKVDRALL  163 (341)
T ss_dssp             CCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHHT---TCEEEEEEECHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHH-HHHHHHHHc---CCCeEEEEECcccccc
Confidence            9999999999999999999999999999998777764 444433333   7999999999997543

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=3.6e-06  Score=55.41  Aligned_cols=89  Identities=13%  Similarity=0.007  Sum_probs=57.1

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHc-CCcEE
Q 031970           19 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-GASYY   97 (150)
Q Consensus        19 ~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~   97 (150)
                      ..+.++.+.+.........  ..+...+...  ..|+++++||.|+......        ......+.+....+ +..++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~v~~k~D~~~~~~~--------~~~~~~~~~~l~~~~~~~~~  165 (188)
T d1puia_          98 SLQGLVVLMDIRHPLKDLD--QQMIEWAVDS--NIAVLVLLTKADKLASGAR--------KAQLNMVREAVLAFNGDVQV  165 (188)
T ss_dssp             TEEEEEEEEETTSCCCHHH--HHHHHHHHHT--TCCEEEEEECGGGSCHHHH--------HHHHHHHHHHHGGGCSCEEE
T ss_pred             heeEEEEeecccccchhHH--HHHHHHhhhc--cccccchhhhhhccCHHHH--------HHHHHHHHHHHHhhCCCCcE
Confidence            4556677777776555544  3455555443  6789999999998765321        00112222223223 23478


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 031970           98 IECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        98 ~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                      +++||++|.||+++++.|...+
T Consensus       166 i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         166 ETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999987654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.27  E-value=2.2e-07  Score=64.61  Aligned_cols=88  Identities=24%  Similarity=0.246  Sum_probs=62.4

Q ss_pred             cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHH---HHHH
Q 031970           14 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE---ELRK   90 (150)
Q Consensus        14 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~---~~~~   90 (150)
                      +-...+.|.+++|+++.+|......+++++-....  .++|.+||.||+|+.++..           ......   ....
T Consensus         5 RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~--~~i~pvIvlnK~DL~~~~~-----------~~~~~~~~~~~y~   71 (231)
T d1t9ha2           5 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQD-----------TEDTIQAYAEDYR   71 (231)
T ss_dssp             TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHH-----------HHHHHHHHHHHHH
T ss_pred             CCCccccCEEEEEEECCCCCCCHHHHHHHHHHHHH--cCCCEEEEEecccccccHH-----------HHHHHHHHHHHHh
Confidence            33567899999999998875333333777665554  4799999999999986532           222233   3344


Q ss_pred             HcCCcEEEEeccCCCCCHHHHHHHH
Q 031970           91 QIGASYYIECSSKTQQNVKAVFDAA  115 (150)
Q Consensus        91 ~~~~~~~~~~Sa~~~~~i~~~~~~l  115 (150)
                      ..+. +++.+||+++.|++++...+
T Consensus        72 ~~g~-~v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          72 NIGY-DVYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             HHTC-CEEECCHHHHTTCTTTGGGG
T ss_pred             hccc-cceeeecCChhHHHHHHHhh
Confidence            5576 89999999999998876644

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.11  E-value=1.7e-06  Score=59.64  Aligned_cols=116  Identities=13%  Similarity=0.059  Sum_probs=63.6

Q ss_pred             CCCCccccccccccc-----ccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccc--
Q 031970            2 NVIGQEDYNRLRPLS-----YRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL--   71 (150)
Q Consensus         2 Dt~G~e~~~~l~~~~-----~~~ad~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~--   71 (150)
                      |+||+..+.......     ....++++++.|+..   +..+...  ..........-..|.++|.||+|+.......  
T Consensus       101 d~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~--~l~~~~~~~~~~~~~ivvinK~D~~~~~~~~~~  178 (244)
T d1yrba1         101 DTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFV--RFFALLIDLRLGATTIPALNKVDLLSEEEKERH  178 (244)
T ss_dssp             ECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHH--HHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhH--HHHHHHHHHHhCCCceeeeeccccccHHHHHHH
Confidence            788887764433221     124568899999863   4444332  1111111111268999999999987642110  


Q ss_pred             --------------cCCCC-CCccCHHHHHHHHHHcCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 031970           72 --------------ADHPG-LVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVV  119 (150)
Q Consensus        72 --------------~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~~  119 (150)
                                    ..... ...............++..+++++||++|+|+++++..|.+..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         179 RKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence                          00000 0000011111112223445899999999999999999887653

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=6.6e-05  Score=55.89  Aligned_cols=112  Identities=12%  Similarity=0.041  Sum_probs=64.7

Q ss_pred             CCCCCccccccc-----ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCC
Q 031970            1 MNVIGQEDYNRL-----RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP   75 (150)
Q Consensus         1 wDt~G~e~~~~l-----~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~   75 (150)
                      |||||......-     ....+..+|++|++.|..  .+-++  ..+++.+.+.  ++|+++|.||+|........   .
T Consensus       112 ~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~--~~~~d--~~l~~~l~~~--~k~~~~V~nK~D~~~~~~~~---~  182 (400)
T d1tq4a_         112 WDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATR--FKKND--IDIAKAISMM--KKEFYFVRTKVDSDITNEAD---G  182 (400)
T ss_dssp             EECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSC--CCHHH--HHHHHHHHHT--TCEEEEEECCHHHHHHHHHT---T
T ss_pred             EeCCCcccccccHHHHHHHhhhhcceEEEEecCCC--CCHHH--HHHHHHHHHc--CCCEEEEEeCcccccchhhh---c
Confidence            899997654322     233466789988887754  23333  2455666654  68999999999964321100   0


Q ss_pred             CCCccCH----HHH----HHHHHHcC--CcEEEEeccCC--CCCHHHHHHHHHHHHhC
Q 031970           76 GLVPVTT----AQG----EELRKQIG--ASYYIECSSKT--QQNVKAVFDAAIKVVIK  121 (150)
Q Consensus        76 ~~~~v~~----~~~----~~~~~~~~--~~~~~~~Sa~~--~~~i~~~~~~l~~~~~~  121 (150)
                      .......    +..    ....+..+  ..+++.+|..+  ..++.++.+.+.+.+..
T Consensus       183 ~~~~~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         183 EPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence            0000111    111    22223323  24578888765  45899999988877653

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.29  E-value=0.00024  Score=51.33  Aligned_cols=86  Identities=9%  Similarity=0.088  Sum_probs=53.0

Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcC---
Q 031970           17 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG---   93 (150)
Q Consensus        17 ~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---   93 (150)
                      ...+|.+++|..+...+..+..    ...+.    +.+=++|.||+|+.+....          .......+.....   
T Consensus       162 ~~~~D~~v~v~~p~~GD~iQ~~----k~gil----E~aDi~vvNKaD~~~~~~~----------~~~~~~~~~~~l~~~~  223 (323)
T d2qm8a1         162 ADLTDFFLVLMLPGAGDELQGI----KKGIF----ELADMIAVNKADDGDGERR----------ASAAASEYRAALHILT  223 (323)
T ss_dssp             HTTSSEEEEEECSCC------C----CTTHH----HHCSEEEEECCSTTCCHHH----------HHHHHHHHHHHHTTBC
T ss_pred             hcccceEEEEeeccchhhhhhh----hhhHh----hhhheeeEeccccccchHH----------HHHHHHHHHHHhhccc
Confidence            3458999999999876555432    22222    2345888999998764321          2222222222211   


Q ss_pred             ------CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           94 ------ASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        94 ------~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                            .++++.+||+++.|++++++.+.+...
T Consensus       224 ~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         224 PPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             CSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             ccccCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence                  247999999999999999999987664

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00012  Score=53.17  Aligned_cols=89  Identities=15%  Similarity=0.129  Sum_probs=52.1

Q ss_pred             cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcC--
Q 031970           16 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--   93 (150)
Q Consensus        16 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--   93 (150)
                      ....+|.+++|.++......+    .....+.+    .+=++|.||+|+......        .....+.....+.+.  
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq----~~k~gi~e----~aDi~VvNKaD~~~~~~~--------~~~~~~~~~al~~~~~~  227 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQ----GIKKGLME----VADLIVINKDDGDNHTNV--------AIARHMYESALHILRRK  227 (327)
T ss_dssp             HHTTCSEEEEEECC------C----CCCHHHHH----HCSEEEECCCCTTCHHHH--------HHHHHHHHHHHHHSCCS
T ss_pred             hhhccceEEEEecCCCchhhh----hhchhhhc----cccEEEEEeecccchHHH--------HHHHHHHHHHhhhcccC
Confidence            455789999998875544433    23333433    234788899998754321        001122222222111  


Q ss_pred             ----CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 031970           94 ----ASYYIECSSKTQQNVKAVFDAAIKVVI  120 (150)
Q Consensus        94 ----~~~~~~~Sa~~~~~i~~~~~~l~~~~~  120 (150)
                          -++++.+||.+|.|++++++.|.+...
T Consensus       228 ~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         228 YDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             BTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             CCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence                147999999999999999999987653

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.58  E-value=0.028  Score=38.63  Aligned_cols=66  Identities=11%  Similarity=0.010  Sum_probs=37.9

Q ss_pred             CCCCCccccccccc---------ccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCC---CCCEEEEeeCCCcccc
Q 031970            1 MNVIGQEDYNRLRP---------LSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSP---GVPVVLVGTKLDLRED   67 (150)
Q Consensus         1 wDt~G~e~~~~l~~---------~~~~~ad~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~---~~piilv~nK~D~~~~   67 (150)
                      +||||-.+......         ....+.+++++|.+++... +.++  ...+..+.+.++   ..++|+|.||+|....
T Consensus        85 iDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~--~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~  162 (257)
T d1h65a_          85 IDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLD--KLVAKAITDSFGKGIWNKAIVALTHAQFSPP  162 (257)
T ss_dssp             EECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHH--HHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred             EeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHH--HHHHHHHHHHcchhhhhCEEEEEECcccCCc
Confidence            69999543222111         1123568899998887642 3332  233334443322   2579999999998764


Q ss_pred             c
Q 031970           68 K   68 (150)
Q Consensus        68 ~   68 (150)
                      .
T Consensus       163 ~  163 (257)
T d1h65a_         163 D  163 (257)
T ss_dssp             G
T ss_pred             C
Confidence            3

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.35  E-value=0.017  Score=40.26  Aligned_cols=53  Identities=19%  Similarity=0.125  Sum_probs=36.5

Q ss_pred             cccccccCCc-EEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970           12 LRPLSYRGAD-VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus        12 l~~~~~~~ad-~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      +...|+..++ ++++|.+.+...+.... ..+.+.+...  ..++++|.||+|....
T Consensus       154 ~~~~y~~~~~~~il~v~~a~~~~~~~~~-~~~~~~~~~~--~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         154 MLMQFVTKENCLILAVSPANSDLANSDA-LKIAKEVDPQ--GQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHHHHTSTTEEEEEEEESSSCGGGCHH-HHHHHHHCTT--CSSEEEEEECGGGSCT
T ss_pred             HHHHHhcCccceeeeecccccchhhhHH-HHHHHHhCcC--CCceeeEEeccccccc
Confidence            3455677766 56667777766666655 5666666543  4689999999998764

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.59  E-value=0.016  Score=40.64  Aligned_cols=54  Identities=19%  Similarity=0.199  Sum_probs=34.4

Q ss_pred             ccccccccCCcEEEEEE-eCCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccc
Q 031970           11 RLRPLSYRGADVFVLAF-SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED   67 (150)
Q Consensus        11 ~l~~~~~~~ad~~i~v~-d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~   67 (150)
                      .+...|+..++.+|+++ +.+........ ..+.+.+...  ..++++|.||+|....
T Consensus       159 ~~~~~yi~~~~~~il~v~~~~~~~~~~~~-~~~~~~~~~~--~~r~i~Vitk~D~~~~  213 (306)
T d1jwyb_         159 RMVMAYIKKQNAIIVAVTPANTDLANSDA-LQLAKEVDPE--GKRTIGVITKLDLMDK  213 (306)
T ss_dssp             HHHHHHHHSTTEEEEEEEESSSCSTTCSH-HHHHHHHCSS--CSSEEEEEECTTSSCS
T ss_pred             HHHHHHHhCCCceeEEeecccccccccHH-HHHHHHhCcC--CCeEEEEEeccccccc
Confidence            45567888999766665 44433333333 4555555432  4689999999998654

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=90.76  E-value=0.54  Score=29.83  Aligned_cols=55  Identities=16%  Similarity=0.191  Sum_probs=41.6

Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEe
Q 031970           29 LVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC  100 (150)
Q Consensus        29 ~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  100 (150)
                      .+|..+++..+++.++.+...  ..|+|++|.......              ..+++.+++...++ |++.+
T Consensus         2 ~sd~~~l~~~v~~~~~~l~~A--krPvIi~G~g~~~~~--------------a~~~l~~lae~~~~-Pv~tt   56 (175)
T d1zpda1           2 ASDEASLNAAVDETLKFIANR--DKVAVLVGSKLRAAG--------------AEEAAVKFTDALGG-AVATM   56 (175)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTC--SCEEEEECTTTTTTT--------------CHHHHHHHHHHHCC-CEEEE
T ss_pred             CCChHHHHHHHHHHHHHHHcC--CCEEEEECcCccccc--------------hHHHHHHHHHhhce-eEEec
Confidence            356777777767777777653  789999999887543              56889999999998 76644

>d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.48  E-value=3.1  Score=26.10  Aligned_cols=54  Identities=13%  Similarity=0.091  Sum_probs=38.5

Q ss_pred             CChhhHHHHHHHHHHHHhhhCCCCCEEEEeeCCCcccccccccCCCCCCccCHHHHHHHHHHcCCcEEEEe
Q 031970           30 VSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC  100 (150)
Q Consensus        30 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  100 (150)
                      +++...+..++...+.+...  ..|+|++|.......              ..+++.++++.+++ +++.+
T Consensus        11 ~~~~~~~~~i~~~~~~l~~A--krPvii~G~g~~~~~--------------a~~~l~~lae~~~~-Pv~tt   64 (179)
T d1pvda1          11 NDAESEKEVIDTILALVKDA--KNPVILADACCSRHD--------------VKAETKKLIDLTQF-PAFVT   64 (179)
T ss_dssp             CCHHHHHHHHHHHHHHHHHC--SSEEEEECGGGTTTS--------------THHHHHHHHHHHCC-CEEEC
T ss_pred             CCCcccHHHHHHHHHHHHhC--CCCEEEEecccchhh--------------hHHHHHHHHHhhCc-eEEec
Confidence            34555555556677777654  689999998765432              56889999999998 76654