Citrus Sinensis ID: 032005

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
MDRQLMLFACFLLLVSSTQAIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEEVSCPIAAGDFVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTCFSFNFKIGFHSLVSDS
ccHHHHHHHHHHHHHHcccccccEEccccccccEEEEEEEEEcccccccccEEEEEEEEEcEEEcccEEEEEEEEccEEEcccccccccccccccccccEEEEEEEEEccccccEEEEEEEEEEEccccEEEEEEEEEEEEcccccccc
cccHEEEEHHHHHHHHcccccccEEcccccccEEEEEEEEEcccccccccEEEEEEEEEEcEEEcccEEEEEEEEEEEEEEccccccccccccccccccEEEEEEEEcccccccccEEEEEEEEEccccEEEEEEEEEEEccccccccc
MDRQLMLFACFLLLVSSTQAIGvkycdkkknYAVTIQQVkiipdpvvtgkpatfniSAVTGQAVYGGKVVINVAYfgvpvhqetrdvceevscpiaagdfvlshtqtlpsftppgsytlkmtmedknneeltcfsfnfkigFHSLVSDS
MDRQLMLFACFLLLVSSTQAIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEEVSCPIAAGDFVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTCFSFNFKIGFHSLVSDS
MDRQLMLFACFLLLVSSTQAIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEEVSCPIAAGDFVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTCFSFNFKIGFHSLVSDS
****LMLFACFLLLVSSTQAIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEEVSCPIAAGDFVLSHTQTLPSFTP**SYTLK*******NEELTCFSFNFKIGFHSL****
*DRQLMLFACFLLLVSSTQAIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEEVSCPIAAGDFVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTCFSFNFKIGFHSL****
MDRQLMLFACFLLLVSSTQAIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEEVSCPIAAGDFVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTCFSFNFKIGFHSLVSDS
*DRQLMLFACFLLLVSSTQAIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEEVSCPIAAGDFVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTCFSFNFKIGFH******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDRQLMLFACFLLLVSSTQAIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQETRDVCEEVSCPIAAGDFVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTCFSFNFKIGFHSLVSDS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query149 2.2.26 [Sep-21-2011]
Q54SW1145 Putative phosphatidylglyc yes no 0.865 0.889 0.311 8e-16
O94183175 Phosphatidylglycerol/phos yes no 0.751 0.64 0.288 1e-10
Q54YD2141 Putative phosphatidylglyc no no 0.704 0.744 0.314 1e-10
Q54SZ9147 Putative phosphatidylglyc no no 0.906 0.918 0.267 4e-10
Q4X136175 Phosphatidylglycerol/phos no no 0.778 0.662 0.28 8e-10
Q7RZ85177 Phosphatidylglycerol/phos N/A no 0.825 0.694 0.265 1e-09
Q4P580193 Phosphatidylglycerol/phos N/A no 0.738 0.569 0.279 2e-09
Q54SZ8142 Putative phosphatidylglyc no no 0.738 0.774 0.298 5e-09
Q9C0X9188 Phosphatidylglycerol/phos yes no 0.812 0.643 0.321 5e-08
Q5A8A2192 Phosphatidylglycerol/phos N/A no 0.758 0.588 0.260 8e-08
>sp|Q54SW1|Y2179_DICDI Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Dictyostelium discoideum GN=DDB_G0282179 PE=3 SV=2 Back     alignment and function desciption
 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 9/138 (6%)

Query: 5   LMLFACFLLLVSSTQAIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAV 64
           L+L   F+L++     I   YCD   N    I ++ ++PDP + GK  T ++     + +
Sbjct: 6   LLLLINFMLILIVNGDIW-NYCDGNINPTFKINKLTLLPDPPLVGKEVTISLEGSLNEQI 64

Query: 65  YGGKVVINVAYF------GVPVHQETRDVCEEVSCPIAAGDFVLSHTQTLPSFTPPGSYT 118
             G  + NVA+F       +P      D+C+ +SCP++AG F  S +  +P FTP G Y 
Sbjct: 65  TSGSSIFNVAFFINGGWRQLPTFHN--DICKVLSCPVSAGPFTYSTSIKVPIFTPHGQYK 122

Query: 119 LKMTMEDKNNEELTCFSF 136
            ++T+ D++N  +TC +F
Sbjct: 123 GQLTLTDQSNRNVTCLTF 140
Catalyzes the intermembrane transfer of phosphatidylglycerol and phosphatidylinositol.
Dictyostelium discoideum (taxid: 44689)
>sp|O94183|NPC2_ASPOR Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=pltp PE=1 SV=1 Back     alignment and function description
>sp|Q54YD2|Y8295_DICDI Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0278295 OS=Dictyostelium discoideum GN=DDB_G0278295 PE=2 SV=1 Back     alignment and function description
>sp|Q54SZ9|Y2107_DICDI Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107 OS=Dictyostelium discoideum GN=DDB_G0282107 PE=3 SV=1 Back     alignment and function description
>sp|Q4X136|NPC2_ASPFU Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=npc2 PE=3 SV=2 Back     alignment and function description
>sp|Q7RZ85|NPC2_NEUCR Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=npc-2 PE=3 SV=1 Back     alignment and function description
>sp|Q4P580|NPC2_USTMA Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Ustilago maydis (strain 521 / FGSC 9021) GN=NPC2 PE=3 SV=1 Back     alignment and function description
>sp|Q54SZ8|NPC22_DICDI Putative phosphatidylglycerol/phosphatidylinositol transfer protein 2 OS=Dictyostelium discoideum GN=DDB_G0282109 PE=3 SV=1 Back     alignment and function description
>sp|Q9C0X9|NPC2_SCHPO Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=npc2 PE=3 SV=1 Back     alignment and function description
>sp|Q5A8A2|NPC2_CANAL Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=NPC2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query149
225464822154 PREDICTED: putative phosphatidylglycerol 0.953 0.922 0.605 6e-45
147804852154 hypothetical protein VITISV_030670 [Viti 0.953 0.922 0.605 8e-45
351723665154 uncharacterized protein LOC100306050 pre 0.919 0.889 0.569 3e-42
351727767157 uncharacterized protein LOC100500637 pre 0.993 0.942 0.556 7e-42
357471387154 hypothetical protein MTR_4g050400 [Medic 0.838 0.811 0.624 1e-41
388510238154 unknown [Medicago truncatula] 0.838 0.811 0.624 1e-41
225439366154 PREDICTED: putative phosphatidylglycerol 0.865 0.837 0.612 3e-41
351722957157 uncharacterized protein LOC100500058 pre 0.859 0.815 0.625 5e-41
388502424152 unknown [Lotus japonicus] 0.973 0.953 0.544 2e-40
255566183155 Phosphatidylglycerol/phosphatidylinosito 0.919 0.883 0.554 3e-40
>gi|225464822|ref|XP_002270174.1| PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Vitis vinifera] gi|296084851|emb|CBI28260.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 86/142 (60%), Positives = 105/142 (73%)

Query: 8   FACFLLLVSSTQAIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGG 67
           F    LLV S QA  V YCDKK  YAV +Q ++I PDP++ GKPATF ISA  G+ + GG
Sbjct: 13  FFAVCLLVPSIQAKSVSYCDKKGQYAVKVQDIQISPDPIIPGKPATFTISASAGEGISGG 72

Query: 68  KVVINVAYFGVPVHQETRDVCEEVSCPIAAGDFVLSHTQTLPSFTPPGSYTLKMTMEDKN 127
           KVVI V+ FGV VH E+ ++CEE SCPI+ G+F LSH+Q LP FTPPGSYTLKM MED++
Sbjct: 73  KVVIEVSLFGVHVHTESHNLCEETSCPISGGNFELSHSQMLPGFTPPGSYTLKMKMEDES 132

Query: 128 NEELTCFSFNFKIGFHSLVSDS 149
             +LTC +FNF IGF S V+DS
Sbjct: 133 KHQLTCITFNFNIGFGSYVADS 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147804852|emb|CAN64691.1| hypothetical protein VITISV_030670 [Vitis vinifera] Back     alignment and taxonomy information
>gi|351723665|ref|NP_001236775.1| uncharacterized protein LOC100306050 precursor [Glycine max] gi|255627393|gb|ACU14041.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|351727767|ref|NP_001237172.1| uncharacterized protein LOC100500637 precursor [Glycine max] gi|255630827|gb|ACU15776.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357471387|ref|XP_003605978.1| hypothetical protein MTR_4g050400 [Medicago truncatula] gi|355507033|gb|AES88175.1| hypothetical protein MTR_4g050400 [Medicago truncatula] gi|388504808|gb|AFK40470.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388510238|gb|AFK43185.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|225439366|ref|XP_002271535.1| PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 isoform 1 [Vitis vinifera] gi|147819263|emb|CAN73359.1| hypothetical protein VITISV_026937 [Vitis vinifera] gi|296089354|emb|CBI39126.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|351722957|ref|NP_001236238.1| uncharacterized protein LOC100500058 precursor [Glycine max] gi|255628897|gb|ACU14793.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388502424|gb|AFK39278.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|255566183|ref|XP_002524079.1| Phosphatidylglycerol/phosphatidylinositol transfer protein precursor, putative [Ricinus communis] gi|223536647|gb|EEF38289.1| Phosphatidylglycerol/phosphatidylinositol transfer protein precursor, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query149
TAIR|locus:2081368152 AT3G44100 "AT3G44100" [Arabido 0.932 0.914 0.556 4.9e-37
TAIR|locus:2144078153 AT5G06480 "AT5G06480" [Arabido 0.966 0.941 0.531 8e-37
DICTYBASE|DDB_G0282179145 DDB_G0282179 "ML domain-contai 0.879 0.903 0.323 1.4e-16
DICTYBASE|DDB_G0278295141 DDB_G0278295 "ML domain-contai 0.704 0.744 0.314 1.5e-12
DICTYBASE|DDB_G0282109142 DDB_G0282109 "ML domain-contai 0.838 0.880 0.308 3.1e-12
DICTYBASE|DDB_G0282107147 DDB_G0282107 "putative phospho 0.906 0.918 0.267 1e-11
TAIR|locus:505006248160 AT2G16005 "AT2G16005" [Arabido 0.865 0.806 0.328 5.8e-11
CGD|CAL0003259192 orf19.3226 [Candida albicans ( 0.758 0.588 0.260 3.2e-10
UNIPROTKB|Q5A8A2192 NPC2 "Phosphatidylglycerol/pho 0.758 0.588 0.260 3.2e-10
POMBASE|SPAPB8E5.04c188 SPAPB8E5.04c "Niemann-Pick dis 0.899 0.712 0.313 3.2e-10
TAIR|locus:2081368 AT3G44100 "AT3G44100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 79/142 (55%), Positives = 96/142 (67%)

Query:     5 LMLFACFLLLVSSTQAIGVKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAV 64
             L+L + F L   +  A    YCDK+ +  V +  VKI PDPVV+G  ATF I   TG+ +
Sbjct:    11 LLLLSVFFL--PALHATSFTYCDKRLD-PVKVTGVKISPDPVVSGAAATFKIFGSTGEDI 67

Query:    65 YGGKVVINVAYFGVPVHQETRDVCEEVSCPIAAGDFVLSHTQTLPSFTPPGSYTLKMTME 124
              GGKVVI V Y G+PVH ET D+C+E +CP+A G FVLSH+QTLPS TPPG+YTLKMT+ 
Sbjct:    68 SGGKVVIRVLYVGIPVHTETHDLCDETACPVAPGSFVLSHSQTLPSITPPGTYTLKMTIN 127

Query:   125 DKNNEELTCFSFNFKIGFHSLV 146
             DKN   LTC SF FKI   S V
Sbjct:   128 DKNGGRLTCISFKFKITVGSAV 149
GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0031225 "anchored to membrane" evidence=TAS
GO:0005773 "vacuole" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
TAIR|locus:2144078 AT5G06480 "AT5G06480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0282179 DDB_G0282179 "ML domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278295 DDB_G0278295 "ML domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0282109 DDB_G0282109 "ML domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0282107 DDB_G0282107 "putative phospholipid transfer protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:505006248 AT2G16005 "AT2G16005" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
CGD|CAL0003259 orf19.3226 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5A8A2 NPC2 "Phosphatidylglycerol/phosphatidylinositol transfer protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
POMBASE|SPAPB8E5.04c SPAPB8E5.04c "Niemann-Pick disease type C2 protein hE1 homolog (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q54SW1Y2179_DICDINo assigned EC number0.31150.86570.8896yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query149
cd00917122 cd00917, PG-PI_TP, The phosphatidylinositol/phosph 4e-39
smart00737119 smart00737, ML, Domain involved in innate immunity 7e-28
pfam02221132 pfam02221, E1_DerP2_DerF2, ML domain 8e-25
cd00916123 cd00916, Npc2_like, Niemann-Pick type C2 (Npc2) is 3e-04
>gnl|CDD|238459 cd00917, PG-PI_TP, The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure Back     alignment and domain information 
 Score =  128 bits (323), Expect = 4e-39
 Identities = 44/122 (36%), Positives = 63/122 (51%), Gaps = 6/122 (4%)

Query: 23  VKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAV-YGGKVVINVAYFGVPVH 81
            +YCDK     V +  V+I P+P   G+  T   S   G+ +  G  VV+ V Y  + + 
Sbjct: 1   FEYCDKGGEDIVKVTSVEISPNPPAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLL 60

Query: 82  QETRDVCEE-----VSCPIAAGDFVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTCFSF 136
            ET D+C+E     +SCPI  GD  L+    LP   PPG YT+      K++EE+TC SF
Sbjct: 61  SETYDLCDETKNVDLSCPIEPGDKFLTKLVDLPGEIPPGKYTVSARAYTKDDEEITCLSF 120

Query: 137 NF 138
           + 
Sbjct: 121 SV 122

These proteins belong to the ML domain family. Length = 122
>gnl|CDD|214796 smart00737, ML, Domain involved in innate immunity and lipid metabolism Back     alignment and domain information
>gnl|CDD|216934 pfam02221, E1_DerP2_DerF2, ML domain Back     alignment and domain information
>gnl|CDD|238458 cd00916, Npc2_like, Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 149
cd00917122 PG-PI_TP The phosphatidylinositol/phosphatidylglyc 100.0
KOG4680153 consensus Uncharacterized conserved protein, conta 99.97
cd00918120 Der-p2_like Several group 2 allergen proteins belo 99.97
cd00916123 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosom 99.97
smart00737118 ML Domain involved in innate immunity and lipid me 99.97
PF02221134 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The 99.96
KOG4063158 consensus Major epididymal secretory protein HE1 [ 99.96
cd00912127 ML The ML (MD-2-related lipid-recognition) domain 99.95
cd00915130 MD-1_MD-2 MD-1 and MD-2 are cofactors required for 99.91
cd00258162 GM2-AP GM2 activator protein (GM2-AP) is a non-enz 99.83
PF14558141 TRP_N: ML-like domain 98.79
PF15418132 DUF4625: Domain of unknown function (DUF4625) 97.62
smart0069793 DM8 Repeats found in several Drosophila proteins. 96.72
PF14524142 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B. 96.12
PF07705101 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic 95.39
PF0647781 DUF1091: Protein of unknown function (DUF1091); In 95.27
PF02115200 Rho_GDI: RHO protein GDP dissociation inhibitor; I 95.18
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 94.61
PLN00044 596 multi-copper oxidase-related protein; Provisional 94.45
PF0423497 CopC: CopC domain; InterPro: IPR007348 CopC is a b 94.14
PRK10301124 hypothetical protein; Provisional 93.2
smart00675164 DM11 Domains in hypothetical proteins in Drosophil 92.5
PLN02991 543 oxidoreductase 91.48
PF05404167 TRAP-delta: Translocon-associated protein, delta s 91.23
PF00339149 Arrestin_N: Arrestin (or S-antigen), N-terminal do 89.56
PLN02168 545 copper ion binding / pectinesterase 88.03
PLN02354 552 copper ion binding / oxidoreductase 87.88
KOG3205200 consensus Rho GDP-dissociation inhibitor [Signal t 87.62
PF03443218 Glyco_hydro_61: Glycosyl hydrolase family 61; Inte 87.17
TIGR02186261 alph_Pro_TM conserved hypothetical protein. This f 86.49
PF09608236 Alph_Pro_TM: Putative transmembrane protein (Alph_ 84.77
cd00918120 Der-p2_like Several group 2 allergen proteins belo 84.66
cd00912127 ML The ML (MD-2-related lipid-recognition) domain 84.01
PF13002191 LDB19: Arrestin_N terminal like; InterPro: IPR0243 83.81
PF0749566 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi 83.4
smart00737118 ML Domain involved in innate immunity and lipid me 83.18
PF02221134 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The 82.8
PF00868118 Transglut_N: Transglutaminase family; InterPro: IP 82.24
PLN02835 539 oxidoreductase 81.68
PF12988137 DUF3872: Domain of unknown function, B. Theta Gene 81.36
KOG1263 563 consensus Multicopper oxidases [Secondary metaboli 81.14
COG2372127 CopC Uncharacterized protein, homolog of Cu resist 80.66
PF1395619 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin syste 80.07
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure Back     alignment and domain information 
Probab=100.00  E-value=1.9e-31  Score=184.11  Aligned_cols=116  Identities=38%  Similarity=0.690  Sum_probs=108.9

Q ss_pred             eeeCCCCCCccEEEeEEEEeCCCCCCCCcEEEEEEEEeCeEeccc-EEEEEEEECCEEeccCCcCCCCC-----CCCCCC
Q 032005           23 VKYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGG-KVVINVAYFGVPVHQETRDVCEE-----VSCPIA   96 (149)
Q Consensus        23 ~~~C~~~~~~~~~i~~~~i~Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~gi~v~~~~~d~C~~-----~~CPl~   96 (149)
                      |++|+....+.++|++++++|||++||++++|++.|+++++++++ ++.+.+++++++++..+.|+|+.     ..||++
T Consensus         1 ~~~C~~~~~~~~~i~~V~isP~p~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~~~~i~~~~~~~DlC~~~~~~g~~CPi~   80 (122)
T cd00917           1 FEYCDKGGEDIVKVTSVEISPNPPAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLLSETYDLCDETKNVDLSCPIE   80 (122)
T ss_pred             CccCCCCCCCeEEEEEEEEECCCcCCCCcEEEEEEEEECcCcCCCCEEEEEEEECCEEeecccCCcccccccCCCcCCcC
Confidence            789988765789999999999999999999999999999999997 88999999999999989999985     489999


Q ss_pred             CCeEEEEEEEEcCCCCCCeeEEEEEEEEcCCCCEEEEEEEEE
Q 032005           97 AGDFVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTCFSFNF  138 (149)
Q Consensus        97 ~G~~~~~~~~~ip~~~P~g~~~v~~~l~d~~~~~~~C~~~~v  138 (149)
                      +|++.|..++.||+++|+|+|+++|+++|+++++++|++|++
T Consensus        81 ~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~Ci~~~~  122 (122)
T cd00917          81 PGDKFLTKLVDLPGEIPPGKYTVSARAYTKDDEEITCLSFSV  122 (122)
T ss_pred             CCcEEEEEEeeCCCCCCCceEEEEEEEECCCCCEEEEEEeeC
Confidence            999779999999999999999999999999999999999975

These proteins belong to the ML domain family.
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only] Back     alignment and domain information
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family Back     alignment and domain information
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes Back     alignment and domain information
>smart00737 ML Domain involved in innate immunity and lipid metabolism Back     alignment and domain information
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products Back     alignment and domain information
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown] Back     alignment and domain information
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi Back     alignment and domain information
>cd00915 MD-1_MD-2 MD-1 and MD-2 are cofactors required for LPS signaling through cell surface receptors Back     alignment and domain information
>cd00258 GM2-AP GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides Back     alignment and domain information
>PF14558 TRP_N: ML-like domain Back     alignment and domain information
>PF15418 DUF4625: Domain of unknown function (DUF4625) Back     alignment and domain information
>smart00697 DM8 Repeats found in several Drosophila proteins Back     alignment and domain information
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B Back     alignment and domain information
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins Back     alignment and domain information
>PF06477 DUF1091: Protein of unknown function (DUF1091); InterPro: IPR010512 This entry contains a number of proteins from Drosophila melanogaster and other insects Back     alignment and domain information
>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>PLN00044 multi-copper oxidase-related protein; Provisional Back     alignment and domain information
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule Back     alignment and domain information
>PRK10301 hypothetical protein; Provisional Back     alignment and domain information
>smart00675 DM11 Domains in hypothetical proteins in Drosophila including 2 in CG15241 and CG9329 Back     alignment and domain information
>PLN02991 oxidoreductase Back     alignment and domain information
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta) Back     alignment and domain information
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli Back     alignment and domain information
>PLN02168 copper ion binding / pectinesterase Back     alignment and domain information
>PLN02354 copper ion binding / oxidoreductase Back     alignment and domain information
>KOG3205 consensus Rho GDP-dissociation inhibitor [Signal transduction mechanisms] Back     alignment and domain information
>PF03443 Glyco_hydro_61: Glycosyl hydrolase family 61; InterPro: IPR005103 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR02186 alph_Pro_TM conserved hypothetical protein Back     alignment and domain information
>PF09608 Alph_Pro_TM: Putative transmembrane protein (Alph_Pro_TM); InterPro: IPR019088 This entry consists of predicted transmembrane proteins of about 270 amino acids Back     alignment and domain information
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family Back     alignment and domain information
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi Back     alignment and domain information
>PF13002 LDB19: Arrestin_N terminal like; InterPro: IPR024391 This entry represents a predicted Ig-like beta sandwich domain found towards the N terminus of protein LDB19 [] Back     alignment and domain information
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators Back     alignment and domain information
>smart00737 ML Domain involved in innate immunity and lipid metabolism Back     alignment and domain information
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products Back     alignment and domain information
>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2 Back     alignment and domain information
>PLN02835 oxidoreductase Back     alignment and domain information
>PF12988 DUF3872: Domain of unknown function, B Back     alignment and domain information
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only] Back     alignment and domain information
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query149
1nep_A130 EPV20, BNPC2, epididymal secretory protein E1; nie 9e-13
2ag4_A164 GM2-AP, ganglioside GM2 activator; complex of sing 2e-09
1xwv_A129 DER F II; beta sheets, allergen; HET: PE3 XPE; 1.8 4e-08
3m7o_A162 Lymphocyte antigen 86; beta sheet, glycoprotein, i 1e-06
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A* Length = 130 Back     alignment and structure
 Score = 60.4 bits (146), Expect = 9e-13
 Identities = 21/131 (16%), Positives = 50/131 (38%), Gaps = 12/131 (9%)

Query: 19  QAIGVKYCDKKKNYAVTIQQVKIIPDP-----VVTGKPATFNISAVTGQAVYGGKVVINV 73
           + +  K C    ++   I++V + P P     +  G+  + N++  +       K V++ 
Sbjct: 1   EPVKFKDC---GSWVGVIKEVNVSPCPTQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHG 57

Query: 74  AYFGV--PVHQETRDVCE-EVSCPIAAG-DFVLSHTQTLPSFTPPGSYTLKMTMEDKNNE 129
              G+  P      D C+  + CPI     +   +   + +  P     ++  + D  N+
Sbjct: 58  IVMGIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLPVKNEYPSIKVVVEWELTDDKNQ 117

Query: 130 ELTCFSFNFKI 140
              C+    ++
Sbjct: 118 RFFCWQIPIEV 128
>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A* Length = 164 Back     alignment and structure
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A Length = 129 Back     alignment and structure
>3m7o_A Lymphocyte antigen 86; beta sheet, glycoprotein, immunity, inflammatory response, I immunity, secreted, immune system; HET: NAG L9R NDG; 1.65A {Mus musculus} PDB: 3t6q_C* 3b2d_C* 3rg1_C* Length = 162 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query149
1nep_A130 EPV20, BNPC2, epididymal secretory protein E1; nie 100.0
1xwv_A129 DER F II; beta sheets, allergen; HET: PE3 XPE; 1.8 99.98
2ag4_A164 GM2-AP, ganglioside GM2 activator; complex of sing 99.89
3m7o_A162 Lymphocyte antigen 86; beta sheet, glycoprotein, i 99.89
3mtx_A151 Protein MD-1; LY86, RP105 associated protein, immu 99.81
3vq2_C144 Lymphocyte antigen 96; leucine rich repeat MD-2 re 99.76
2e56_A144 Lymphocyte antigen 96; innate immunity, lipid-bind 99.49
1kmt_A141 RHO GDP-dissociation inhibitor 1; immunoglobulin f 95.0
1ds6_B180 RHO GDP-dissociation inhibitor 2; beta sandwhich, 94.36
1doa_B219 RHO GDI 1, protein (GDP-dissociation inhibitor 1); 93.73
2r5o_A188 Putative ATP binding component of ABC- transporter 93.68
3idu_A127 Uncharacterized protein; all beta-protein, structu 93.48
2vtc_A249 CEL61B, cellulase; hydrolase, glycoside; HET: NAG; 92.72
1lyq_A104 PCOC copper resistance protein; beta barrel, IG do 90.7
2c9r_A102 COPC, copper resistance protein C; copper transpor 90.06
3eja_A208 Protein GH61E; beta sandwich, fibronectin type III 89.41
4eir_A223 Polysaccharide monooxygenase-2; GH61, PMO, cellula 88.83
2f1e_A127 Protein APAG; APAG protein, xanthomonas axonopodis 87.45
1xq4_A139 Protein APAG; all beta protein, structural genomic 87.44
1xvs_A126 Protein APAG; MCSG APC26324, midwest center for st 87.06
1tza_A134 APAG protein, SOR45; structural genomics, PSI, pro 86.59
4eis_A225 Polysaccharide monooxygenase-3; GH61, PMO, cellula 86.41
3zud_A228 GH61 isozyme A; hydrolase, degradation of recalcit 83.92
1v10_A 521 Laccase; multicopper blue oxidase, oxidase; 1.7A { 82.95
2l0d_A114 Cell surface protein; structural genomics, northea 82.94
2kut_A122 Uncharacterized protein; structural genomics, PSI- 80.06
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A* Back     alignment and structure
Probab=100.00  E-value=2.1e-32  Score=189.90  Aligned_cols=123  Identities=16%  Similarity=0.354  Sum_probs=112.5

Q ss_pred             CccceeeCCCCCC--ccEEEeEEEEeCCCCCCCCcEEEEEEEEeCeEecccEEEEEEEECCEEeccC--CcCCCC-CCCC
Q 032005           19 QAIGVKYCDKKKN--YAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQE--TRDVCE-EVSC   93 (149)
Q Consensus        19 ~~~~~~~C~~~~~--~~~~i~~~~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~gi~v~~~--~~d~C~-~~~C   93 (149)
                      ++++|++|++..+  ..++|++|+..||+++||+++++++.|++++++++++..+.+.++|+++|++  +.|+|+ +..|
T Consensus         1 ~~~~f~~C~~~~~~i~~V~V~~C~~~PC~l~rG~~~~i~i~f~~~~~~~~~~~~v~~~~~gv~vp~~~~~~daC~~g~~C   80 (130)
T 1nep_A            1 EPVKFKDCGSWVGVIKEVNVSPCPTQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVMGIPVPFPIPESDGCKSGIRC   80 (130)
T ss_dssp             CBCCCEESCCCSEEEEEEEEESCSSSSEEEETTCEEEEEEEEEESSCBSCCEEEEEEEETTEEEECCCSCCBGGGTTCCS
T ss_pred             CCcEEEECCCCCCeEeEEEECCCCCCCCEEEcCCeEEEEEEEEcccccceEEEEEEEEECCEEeeccCCCCCcccCCCcC
Confidence            3579999998643  4788888888888999999999999999999999999999999999999865  689997 5899


Q ss_pred             CCCCCe-EEEEEEEEcCCCCCCeeEEEEEEEEcCCCCEEEEEEEEEEEc
Q 032005           94 PIAAGD-FVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTCFSFNFKIG  141 (149)
Q Consensus        94 Pl~~G~-~~~~~~~~ip~~~P~g~~~v~~~l~d~~~~~~~C~~~~v~i~  141 (149)
                      |+++|+ |+|+++++|++.||.++|+++|+|+|++|+.++||+++++|+
T Consensus        81 Pl~~G~~~~y~~~lpV~~~~P~~~~~v~~~L~d~~~~~l~C~~~~~~I~  129 (130)
T 1nep_A           81 PIEKDKTYNYVNKLPVKNEYPSIKVVVEWELTDDKNQRFFCWQIPIEVE  129 (130)
T ss_dssp             SBCTTCEEEEEEEEECCTTSCSSEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred             cccCCcEEEEEEEeEecccCCCccEEEEEEEEcCCCCEEEEEEEeEEEE
Confidence            999998 999999999999999999999999999999999999999996
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A Back     alignment and structure
>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A* Back     alignment and structure
>3m7o_A Lymphocyte antigen 86; beta sheet, glycoprotein, immunity, inflammatory response, I immunity, secreted, immune system; HET: NAG L9R NDG; 1.65A {Mus musculus} PDB: 3t6q_C* 3b2d_C* 3rg1_C* Back     alignment and structure
>3mtx_A Protein MD-1; LY86, RP105 associated protein, immune system; HET: PGT PGE; 2.00A {Gallus gallus} PDB: 3mu3_A* Back     alignment and structure
>3vq2_C Lymphocyte antigen 96; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_C* 2z64_C* Back     alignment and structure
>2e56_A Lymphocyte antigen 96; innate immunity, lipid-binding, lipid binding protein; HET: NAG MYR; 2.00A {Homo sapiens} PDB: 2e59_A* 3fxi_C* 3ula_B* 2z65_C* Back     alignment and structure
>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A Back     alignment and structure
>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A Back     alignment and structure
>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E* Back     alignment and structure
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli} Back     alignment and structure
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A Back     alignment and structure
>2vtc_A CEL61B, cellulase; hydrolase, glycoside; HET: NAG; 1.6A {Hypocrea jecorina} Back     alignment and structure
>1lyq_A PCOC copper resistance protein; beta barrel, IG domain, metal binding protein; 1.50A {Escherichia coli} SCOP: b.1.18.17 PDB: 1ix2_A Back     alignment and structure
>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A Back     alignment and structure
>3eja_A Protein GH61E; beta sandwich, fibronectin type III fold, metal site, magnes unknown function; HET: NAG; 1.90A {Thielavia terrestris} PDB: 3eii_A* Back     alignment and structure
>4eir_A Polysaccharide monooxygenase-2; GH61, PMO, cellulase, biofuels copper monooxygenase, peroxide, superoxide, CBP21, beta-SAN fold, secreted; HET: HIC NAG GOL; 1.10A {Neurospora crassa} Back     alignment and structure
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV} Back     alignment and structure
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1 Back     alignment and structure
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1 Back     alignment and structure
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1 Back     alignment and structure
>4eis_A Polysaccharide monooxygenase-3; GH61, PMO, cellulase, biofuels, CBM33, copper monooxygenase, peroxide, superoxide, CBP21, beta-sandwich fold; HET: HIC DAH NAG; 1.37A {Neurospora crassa} PDB: 4eis_B* Back     alignment and structure
>3zud_A GH61 isozyme A; hydrolase, degradation of recalcitrant biomass; HET: HIC NAG TAM; 1.25A {Thermoascus aurantiacus} PDB: 2yet_A* Back     alignment and structure
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 Back     alignment and structure
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans} Back     alignment and structure
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 149
d2ag4a1163 b.95.1.1 (A:2-164) Ganglioside M2 (gm2) activator 4e-20
d1nepa_130 b.1.18.7 (A:) Epididymal secretory protein E1 (Nie 3e-17
d1xwva_129 b.1.18.7 (A:) Major mite allergen {House-dust mite 7e-16
>d2ag4a1 b.95.1.1 (A:2-164) Ganglioside M2 (gm2) activator {Human (Homo sapiens) [TaxId: 9606]} Length = 163 Back     information, alignment and structure

class: All beta proteins
fold: Ganglioside M2 (gm2) activator
superfamily: Ganglioside M2 (gm2) activator
family: Ganglioside M2 (gm2) activator
domain: Ganglioside M2 (gm2) activator
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.3 bits (195), Expect = 4e-20
 Identities = 24/156 (15%), Positives = 48/156 (30%), Gaps = 41/156 (26%)

Query: 24  KYCDKKKNYAVTIQQVKIIPDPVVTGKPATFNISAVTGQAV-YGGKVVINVAYFGVPVHQ 82
             CD+ K+    I+ + + PDP+V     T ++   T   +    KV + +      +  
Sbjct: 7   DNCDEGKD-PAVIRSLTLEPDPIVVPGNVTLSVVGSTSVPLSSPLKVDLVLEKEVAGLWI 65

Query: 83  -----------ETRDVCEE---------------------VSCPIAAGDFVLSHTQT--- 107
                           C+                        CP   G + L  ++    
Sbjct: 66  KIPCTDYIGSCTFEHFCDVLDMLIPTGEPCPEPLRTYGLPCHCPFKEGTYSLPKSEFVVP 125

Query: 108 ---LPSFTPPGSYTLKMTMEDKNNEELTCFSFNFKI 140
              LPS+   G+Y ++  +   + + L C      +
Sbjct: 126 DLELPSWLTTGNYRIESVL-SSSGKRLGCIKIAASL 160
>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick C2 protein) {Cow (Bos taurus) [TaxId: 9913]} Length = 130 Back     information, alignment and structure
>d1xwva_ b.1.18.7 (A:) Major mite allergen {House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954]} Length = 129 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query149
d1nepa_130 Epididymal secretory protein E1 (Niemann-Pick C2 p 100.0
d1xwva_129 Major mite allergen {House-dust mite (Dermatophago 99.97
d2ag4a1163 Ganglioside M2 (gm2) activator {Human (Homo sapien 99.86
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 96.29
d1kmta_138 Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H 95.91
d1ds6b_179 Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H 94.3
d1ix2a_102 Copper resistance protein C (CopC, PcoC) {Escheric 91.39
d2c9qa1102 Copper resistance protein C (CopC, PcoC) {Pseudomo 90.72
d1g0da1135 Transglutaminase N-terminal domain {Red sea bream 88.08
d1tzaa_132 ApaG {Shewanella oneidensis [TaxId: 70863]} 87.92
d1xq4a_123 ApaG {Bordetella pertussis [TaxId: 520]} 83.93
d1xvsa_124 ApaG {Vibrio cholerae [TaxId: 666]} 81.98
d1nepa_130 Epididymal secretory protein E1 (Niemann-Pick C2 p 81.12
>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick C2 protein) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: ML domain
domain: Epididymal secretory protein E1 (Niemann-Pick C2 protein)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.9e-33  Score=190.10  Aligned_cols=123  Identities=16%  Similarity=0.354  Sum_probs=112.5

Q ss_pred             CccceeeCCCCCC--ccEEEeEEEEeCCCCCCCCcEEEEEEEEeCeEecccEEEEEEEECCEEeccC--CcCCCC-CCCC
Q 032005           19 QAIGVKYCDKKKN--YAVTIQQVKIIPDPVVTGKPATFNISAVTGQAVYGGKVVINVAYFGVPVHQE--TRDVCE-EVSC   93 (149)
Q Consensus        19 ~~~~~~~C~~~~~--~~~~i~~~~i~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~gi~v~~~--~~d~C~-~~~C   93 (149)
                      +.++|++||+...  ..++|++|+..||+++||+++++++.|+++++++++++.+.++++|+++|++  +.|+|+ +++|
T Consensus         1 e~v~f~~Cg~~~~~~~~v~I~~C~~~PC~l~rG~~~~i~i~f~~~~~~~~~~~~v~~~~~gi~ip~p~~~~d~C~~g~~C   80 (130)
T d1nepa_           1 EPVKFKDCGSWVGVIKEVNVSPCPTQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVMGIPVPFPIPESDGCKSGIRC   80 (130)
T ss_dssp             CBCCCEESCCCSEEEEEEEEESCSSSSEEEETTCEEEEEEEEEESSCBSCCEEEEEEEETTEEEECCCSCCBGGGTTCCS
T ss_pred             CCcceEeCCCCCCcEEEEEEeCCCCCCCEeeCCCEEEEEEEEEcCcccceEEEEEEEEECCEEecccCCCCcccccCCcC
Confidence            4689999998632  4678888888899999999999999999999999999999999999998876  678997 4899


Q ss_pred             CCCCCe-EEEEEEEEcCCCCCCeeEEEEEEEEcCCCCEEEEEEEEEEEc
Q 032005           94 PIAAGD-FVLSHTQTLPSFTPPGSYTLKMTMEDKNNEELTCFSFNFKIG  141 (149)
Q Consensus        94 Pl~~G~-~~~~~~~~ip~~~P~g~~~v~~~l~d~~~~~~~C~~~~v~i~  141 (149)
                      |+++|+ |+|+++++|++.||.++|+++|+|+|++|+.++||+++++|.
T Consensus        81 Pl~~G~~~~y~~~~~I~~~~P~~~~~v~~~l~d~~~~~i~Cf~v~~~I~  129 (130)
T d1nepa_          81 PIEKDKTYNYVNKLPVKNEYPSIKVVVEWELTDDKNQRFFCWQIPIEVE  129 (130)
T ss_dssp             SBCTTCEEEEEEEEECCTTSCSSEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred             CccCCceEEEEEEEEcchhhccEEEEEEEEEEcCCCCEEEEEEEeeEEE
Confidence            999998 999999999999999999999999999999999999999985
>d1xwva_ b.1.18.7 (A:) Major mite allergen {House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954]} Back     information, alignment and structure
>d2ag4a1 b.95.1.1 (A:2-164) Ganglioside M2 (gm2) activator {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ix2a_ b.1.18.17 (A:) Copper resistance protein C (CopC, PcoC) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c9qa1 b.1.18.17 (A:1-102) Copper resistance protein C (CopC, PcoC) {Pseudomonas syringae [TaxId: 317]} Back     information, alignment and structure
>d1g0da1 b.1.18.9 (A:6-140) Transglutaminase N-terminal domain {Red sea bream (Chrysophrys major) [TaxId: 143350]} Back     information, alignment and structure
>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]} Back     information, alignment and structure
>d1xq4a_ b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 520]} Back     information, alignment and structure
>d1xvsa_ b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick C2 protein) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure