Citrus Sinensis ID: 032006

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MDGREDLMSKLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDIAL
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEcEEcccccEEEEEEEccccEEEEEEccccccccHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHccEEEEEEEccccEEEEEEEEccccEEEEEEccccccccHccccccHHHHHHHHHHHHHHHHHccccccccccccEEEcHccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MDGREDLMSKLFtdvdmifipvnlggdHWVLALADLRARRMRIYDSLVTfredktylrkfkplqvvfpqwlqdvgfynirpelqsadpwkvrivkdvpqqepgsgdcgVFMLMFTMYLMFGLKldfdsshghyfrkkiavdifpgdial
Flexible Loop (DISEMBL)
MDGREDLMSKLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLvtfredktylrkfkplqvvFPQWLQDVGFYNIRPelqsadpwkVRIVKDvpqqepgsgDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDIAL
Low Complexity Region (SEG)
MDGREDLMSKLFTDVDMIFIPVNLGGDHWVlaladlrarrMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDIAL
Disordered region (IsUnstruct)
*********KLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQ*PGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPG****
Disordered Region (DISOPRED)
*******MSKLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDIAL
Disordered Region (DISEMBL)
MDGREDLMSKLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDIAL
Disordered Region (DISPRO)
****EDLMSKLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDIAL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDGREDLMSKLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDIAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
Q94F30	489	Ubiquitin-like-specific p	yes	no	0.785	0.239	0.312	3e-09
Q5RBB1	645	Sentrin-specific protease	yes	no	0.785	0.181	0.267	9e-08
Q9P0U3	644	Sentrin-specific protease	yes	no	0.785	0.181	0.267	9e-08
P59110	640	Sentrin-specific protease	yes	no	0.785	0.182	0.267	1e-07
O65278	341	Putative ubiquitin-like-s	no	no	0.778	0.340	0.300	4e-06
Q8GYL3	502	Ubiquitin-like-specific p	no	no	0.791	0.235	0.292	4e-06
Q09353	697	Sentrin-specific protease	no	no	0.751	0.160	0.253	1e-05
Q02724	621	Ubiquitin-like-specific p	yes	no	0.751	0.180	0.304	1e-05
B0BAX8	339	Deubiquitinase and denedd	yes	no	0.812	0.356	0.251	4e-05
B0B999	339	Deubiquitinase and denedd	yes	no	0.812	0.356	0.251	5e-05

>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana GN=ESD4 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 14/131 (10%)

Query: 14  DVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQV-VFPQWLQ 72
           D DMIF+P++ G  HW LA+ + R  ++   DSL              P+ +    +++ 
Sbjct: 367 DCDMIFVPIHRGV-HWTLAVINNRESKLLYLDSL----------NGVDPMILNALAKYMG 415

Query: 73  DVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGH 132
           D        ++  A+ W +  V+D+PQQ+ G  DCG+FML +  +   GL L F   H  
Sbjct: 416 DEANEKSGKKI-DANSWDMEFVEDLPQQKNGY-DCGMFMLKYIDFFSRGLGLCFSQEHMP 473

Query: 133 YFRKKIAVDIF 143
           YFR + A +I 
Sbjct: 474 YFRLRTAKEIL 484

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, but not of SUM3 or SUM5. Able to release SUM1 and SUM2 from conjugates, but unable to cleave SUM3. Acts predominantly as an isopeptidase, cleaving SUMO-conjugated proteins better than SUMO peptides. Plays an important role in the control of flowering time.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8

>sp|Q5RBB1|SENP1_PONAB Sentrin-specific protease 1 OS=Pongo abelii GN=SENP1 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 14/131 (10%)

Query: 15  VDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDV 74
           VD++ +P++LG  HW LA+ D R + +  YDS+     +            +  Q+L+  
Sbjct: 522 VDILLVPIHLGV-HWCLAVVDFRKKNITYYDSMGGINNEACR---------ILLQYLKQE 571

Query: 75  GFYNIRPELQSADPWKV--RIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGH 132
                R E  + + W++  +  +++PQQ  GS DCG+F   +   +     ++F   H  
Sbjct: 572 SIDKKRKEFDT-NGWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRPINFTQQHMP 629

Query: 133 YFRKKIAVDIF 143
           YFRK++  +I 
Sbjct: 630 YFRKRMVWEIL 640

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMO1, SUMO2 and SUMO3 to their mature forms and deconjugation of SUMO1, SUMO2 and SUMO3 from targeted proteins. Deconjugates SUMO1 from HIPK2. Deconjugates SUMO1 from HDAC1, which decreases its transcriptional repression activity.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q9P0U3|SENP1_HUMAN Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2

 Score = 55.8 bits (133), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 14/131 (10%)

Query: 15  VDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDV 74
           VD++ +P++LG  HW LA+ D R + +  YDS+     +            +  Q+L+  
Sbjct: 521 VDILLVPIHLGV-HWCLAVVDFRKKNITYYDSMGGINNEACR---------ILLQYLKQE 570

Query: 75  GFYNIRPELQSADPWKV--RIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGH 132
                R E  + + W++  +  +++PQQ  GS DCG+F   +   +     ++F   H  
Sbjct: 571 SIDKKRKEFDT-NGWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRPINFTQQHMP 628

Query: 133 YFRKKIAVDIF 143
           YFRK++  +I 
Sbjct: 629 YFRKRMVWEIL 639

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMO1, SUMO2 and SUMO3 to their mature forms and deconjugation of SUMO1, SUMO2 and SUMO3 from targeted proteins. Deconjugates SUMO1 from HIPK2. Deconjugates SUMO1 from HDAC1, which decreases its transcriptional repression activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|P59110|SENP1_MOUSE Sentrin-specific protease 1 OS=Mus musculus GN=Senp1 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 14/131 (10%)

Query: 15  VDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDV 74
           VD++ +P++LG  HW LA+ D R + +  YDS+     +            +  Q+L+  
Sbjct: 517 VDILLVPIHLGV-HWCLAVVDFRRKSITYYDSMGGINNEACR---------ILLQYLKQE 566

Query: 75  GFYNIRPELQSADPWKV--RIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGH 132
                R E  + + W++  +  +++PQQ  GS DCG+F   +   +     ++F   H  
Sbjct: 567 SVDKKRKEFDT-NGWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRPINFTQQHMP 624

Query: 133 YFRKKIAVDIF 143
           YFRK++  +I 
Sbjct: 625 YFRKRMVWEIL 635

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMO1, SUMO2 and SUMO3 to their mature forms and deconjugation of SUMO1, SUMO2 and SUMO3 from targeted proteins. Deconjugates SUMO1 from HIPK2. Deconjugates SUMO1 from HDAC1, which decreases its transcriptional repression activity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|O65278|ULP1B_ARATH Putative ubiquitin-like-specific protease 1B OS=Arabidopsis thaliana GN=ULP1B PE=5 SV=2

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 17/133 (12%)

Query: 14  DVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQD 73
           D D+IF+P+++   HW L + + R R+    DSL T     T L           ++L D
Sbjct: 218 DCDIIFVPIHIDI-HWTLGVINNRERKFVYLDSLFTG-VGHTILN-------AMAKYLVD 268

Query: 74  VGFYNIRPELQS---ADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSH 130
                ++ + Q       W +  V++ PQQ+ G  DCG+FML +  +   GL L F    
Sbjct: 269 ----EVKQKSQKNIDVSSWGMEYVEERPQQQNGY-DCGMFMLKYIDFYSRGLSLQFSQKD 323

Query: 131 GHYFRKKIAVDIF 143
             YFR + A +I 
Sbjct: 324 MPYFRLRTAKEIL 336

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q8GYL3|ULP1A_ARATH Ubiquitin-like-specific protease 1A OS=Arabidopsis thaliana GN=ULP1A PE=2 SV=2

 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 12/130 (9%)

Query: 14  DVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQD 73
           D D IFIP+++   HW LA+ +++ ++ +  DS    RE K        L   F   ++D
Sbjct: 380 DCDKIFIPIHMN-IHWTLAVINIKDQKFQYLDSFKG-REPKI----LDALARYFVDEVRD 433

Query: 74  VGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHY 133
               ++         W+   V+D+P Q  G  DCG+FM+ +  +   GL L F      Y
Sbjct: 434 KSEVDL-----DVSRWRQEFVQDLPMQRNGF-DCGMFMVKYIDFYSRGLDLCFTQEQMPY 487

Query: 134 FRKKIAVDIF 143
           FR + A +I 
Sbjct: 488 FRARTAKEIL 497

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, and very inefficiently of SUM3. Seems to be the only ULP1 able to cleave SUM3 precursors. Cleaves SUMO peptides better than SUMO-conjugated proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q09353|SENP_CAEEL Sentrin-specific protease OS=Caenorhabditis elegans GN=ulp-1 PE=2 SV=3

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 18/130 (13%)

Query: 16  DMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQ---WLQ 72
           D++ +PV+LG  HW +A+ D+  +++  YDSL            +     V P    +L+
Sbjct: 574 DIVLVPVHLGM-HWCMAVIDMGEKKIEFYDSL------------YDGNTAVLPALRGYLE 620

Query: 73  DVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGH 132
                  +  +  +  W ++ + D+P+Q+ GS DCGVF   F  +        F   +  
Sbjct: 621 AESLDKKKTAMNFSG-WTIQQMTDIPRQQNGS-DCGVFSCQFGEWASRRTTPRFTQKNMP 678

Query: 133 YFRKKIAVDI 142
           Y+RK++  +I
Sbjct: 679 YYRKRMVYEI 688

Protease that deconjugates smo-1 from targeted proteins and may catalyze the processing of smo-1 to its mature form.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q02724|ULP1_YEAST Ubiquitin-like-specific protease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ULP1 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 53/125 (42%), Gaps = 13/125 (10%)

Query: 15  VDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDV 74
           +D IF P+NL   HW L + DL+ + +   DSL              P  + F   L D+
Sbjct: 501 LDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSN-----------GPNAMSF-AILTDL 548

Query: 75  GFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYF 134
             Y +     +       I  D PQQ P   DCG+++ M T+Y      LDFD       
Sbjct: 549 QKYVMEESKHTIGEDFDLIHLDCPQQ-PNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRM 607

Query: 135 RKKIA 139
           R+ IA
Sbjct: 608 RRFIA 612

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SMT3 to its mature form and deconjugation of SMT3 from targeted proteins. Has an essential role in the G2/M phase of the cell cycle.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|B0BAX8|CDUB2_CHLTB Deubiquitinase and deneddylase Dub2 OS=Chlamydia trachomatis serovar L2b (strain UCH-1/proctitis) GN=cdu2 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 10/131 (7%)

Query: 2   DGREDLMSKLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRK-- 59
           D   D    + T +D       +G  HWVL + D+  R +  +DSL  +      +R+  
Sbjct: 177 DPSADTQEAMLTKMDQTMSSGRVGNSHWVLVIVDIEYRCVTFFDSLCDYVASPQQMREQL 236

Query: 60  ---FKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTM 116
                 L  ++P   ++ G  + + EL S  P++VRI   V  Q PG   CG +   F  
Sbjct: 237 EGLAVSLGAIYP---KEGGADSDQEELLS--PFQVRIGSTVKVQSPGEFTCGAWCCQFLA 291

Query: 117 YLMFGLKLDFD 127
           + +     D +
Sbjct: 292 WYLENPDFDLE 302

Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. This protease possesses deubiquitinating and deneddylating activities.

Chlamydia trachomatis serovar L2b (strain UCH-1/proctitis) (taxid: 471473)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|B0B999|CDUB2_CHLT2 Deubiquitinase and deneddylase Dub2 OS=Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) GN=cdu2 PE=3 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 10/131 (7%)

Query: 2   DGREDLMSKLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRK-- 59
           D   D    + T +D       +G  HWVL + D+  R +  +DSL  +      +R+  
Sbjct: 177 DPSADTQEAMLTKMDQTMSSGRVGNSHWVLVIVDIEYRCVTFFDSLCDYVASPQQMREQL 236

Query: 60  ---FKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTM 116
                 L  ++P   ++ G  + + EL S  P++VRI   V  Q PG   CG +   F  
Sbjct: 237 EGLAVSLGAIYP---KEGGADSDQEELLS--PFQVRIGSTVKVQSPGEFTCGAWCCQFLA 291

Query: 117 YLMFGLKLDFD 127
           + +     D +
Sbjct: 292 WYLENPDFDLE 302

Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. This protease possesses deubiquitinating and deneddylating activities.

Chlamydia trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B) (taxid: 471472)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
147778025	701	hypothetical protein VITISV_042738 [Viti	0.946	0.201	0.298	2e-13
255071543	869	predicted protein [Micromonas sp. RCC299	0.778	0.133	0.367	4e-12
46398240	423	Ulp1-like peptidase [Cucumis melo] gi|51	0.892	0.314	0.301	5e-12
255070579	254	predicted protein [Micromonas sp. RCC299	0.832	0.488	0.360	7e-12
384247142	209	cysteine proteinase [Coccomyxa subellips	0.825	0.588	0.385	1e-11
195448669	1064	GK10155 [Drosophila willistoni] gi|19416	0.818	0.114	0.328	2e-11
194770407	1044	GF16000 [Drosophila ananassae] gi|190614	0.859	0.122	0.333	2e-11
281360439	480	CG11023, isoform C [Drosophila melanogas	0.845	0.262	0.302	2e-11
241678633	221	sentrin/sumo-specific protease, putative	0.818	0.552	0.318	2e-11
48596411	180	CG11023 protein [Drosophila melanogaster	0.845	0.7	0.302	4e-11

>gi|147778025|emb|CAN65286.1| hypothetical protein VITISV_042738 [Vitis vinifera]

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 77/144 (53%), Gaps = 3/144 (2%)

Query: 2   DGREDLMSKLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFK 61
           +G + L S  + DVD++++P+N+   HWVL +  L  R + +YDSL+    +       K
Sbjct: 552 NGLQPLYSIKWPDVDIVYVPINVRASHWVLGVVYLHRRIIYVYDSLMGINNNARLQVAIK 611

Query: 62  PLQVVFPQWLQDVGFYNIRPELQ-SADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMF 120
            L  + P  L  + +Y    + + +   W++  ++D+PQQE   GDCG+F++ +  YLM 
Sbjct: 612 ALAKLLPHILNAIAYYGFHGDTKVNYQEWEIERLQDIPQQE-NDGDCGMFVMKYVEYLMH 670

Query: 121 GLKL-DFDSSHGHYFRKKIAVDIF 143
              L    S+    F +K+A ++F
Sbjct: 671 NHTLKSLTSARMDCFWEKMAAELF 694

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255071543|ref|XP_002499446.1| predicted protein [Micromonas sp. RCC299] gi|226514708|gb|ACO60704.1| predicted protein [Micromonas sp. RCC299]

 Score = 76.3 bits (186), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/128 (36%), Positives = 68/128 (53%), Gaps = 12/128 (9%)

Query: 14  DVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQD 73
           + D + IPV+  G HWVLA+ DL A+ +R YDSL+   +DK  +           +W++D
Sbjct: 748 ECDKVIIPVH-QGIHWVLAVIDLAAKCVRFYDSLLG--DDKGLVEDLL-------RWVRD 797

Query: 74  VGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHY 133
             + N +      + W V I KD+P+Q  G  DCGVFML +  Y+  G  L F      Y
Sbjct: 798 -EWKNKKDADVDTESWSVEIPKDIPRQMNGC-DCGVFMLKYADYIATGCPLTFHQRDMEY 855

Query: 134 FRKKIAVD 141
           FR++I  D
Sbjct: 856 FRRRIVAD 863

Source: Micromonas sp. RCC299

Species: Micromonas sp. RCC299

Genus: Micromonas

Order: Mamiellales

Class: Mamiellophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|46398240|gb|AAS91798.1| Ulp1-like peptidase [Cucumis melo] gi|51477401|gb|AAU04774.1| Ulp1 peptidase-like [Cucumis melo]

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 73/136 (53%), Gaps = 3/136 (2%)

Query: 12  FTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWL 71
           +  VD ++ P N+ G+HWVL   DL + +++++DSL +    +       P++ + P+ L
Sbjct: 281 WASVDYVYSPFNVHGNHWVLLCLDLVSCQVKVWDSLPSLTTAEEMTNILLPIRQLVPKLL 340

Query: 72  QDVGFYNIRPELQS-ADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLD-FDSS 129
              GF++ R    +  +PW V IV  +P Q   + DCGVF + +  Y+  G+ LD     
Sbjct: 341 DSTGFFDRRGRSSTYKEPWPVVIVDPIPLQR-NNCDCGVFAIKYFEYIAAGVGLDTLCQE 399

Query: 130 HGHYFRKKIAVDIFPG 145
           +  YFRK++A  ++  
Sbjct: 400 NMSYFRKQLAFQVWTN 415

Source: Cucumis melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255070579|ref|XP_002507371.1| predicted protein [Micromonas sp. RCC299] gi|226522646|gb|ACO68629.1| predicted protein [Micromonas sp. RCC299]

 Score = 75.5 bits (184), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 12/136 (8%)

Query: 14  DVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQD 73
           + D + IPV+ G  HWVLA+ DL A+ +R YDSL+   +DK  ++          +W++D
Sbjct: 125 ECDKVIIPVHQG-IHWVLAVIDLAAKCVRFYDSLLG--DDKGLVKDLL-------RWVRD 174

Query: 74  VGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHY 133
             + N +      D W V I KD+P+Q  G  DCGVFML +  Y+  G  L F      Y
Sbjct: 175 E-WKNKKDADVDTDGWSVEIPKDIPRQMNGC-DCGVFMLKYADYIATGCPLTFHQRDMEY 232

Query: 134 FRKKIAVDIFPGDIAL 149
           FR++I  D     I++
Sbjct: 233 FRQRIVADAMEKGISV 248

Source: Micromonas sp. RCC299

Species: Micromonas sp. RCC299

Genus: Micromonas

Order: Mamiellales

Class: Mamiellophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|384247142|gb|EIE20629.1| cysteine proteinase [Coccomyxa subellipsoidea C-169]

 Score = 74.7 bits (182), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 71/135 (52%), Gaps = 12/135 (8%)

Query: 14  DVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQD 73
           DV+ + +PV+LG +HW  AL DL A+ +  +DSL   REDK  LR  +        ++ D
Sbjct: 87  DVERVIVPVHLG-NHWTCALIDLVAQEIVYFDSLGG-REDKI-LRALR-------SYIAD 136

Query: 74  VGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHY 133
             + + R        W +R  +DVP Q+ G  DCGVF L F  +L  G  +DF      +
Sbjct: 137 -EYRDKRNAEVDTSEWPIRYPRDVPLQQNGC-DCGVFALQFAEHLSRGAPMDFSQLDMPF 194

Query: 134 FRKKIAVDIFPGDIA 148
           FR KIA DI  G IA
Sbjct: 195 FRAKIAADIMTGRIA 209

Source: Coccomyxa subellipsoidea C-169

Species: Coccomyxa subellipsoidea

Genus: Coccomyxa

Family: Coccomyxaceae

Class: Trebouxiophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|195448669|ref|XP_002071761.1| GK10155 [Drosophila willistoni] gi|194167846|gb|EDW82747.1| GK10155 [Drosophila willistoni]

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/140 (32%), Positives = 75/140 (53%), Gaps = 18/140 (12%)

Query: 11   LFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVF--- 67
            LF+ +D+I +PV++GG HW +A+  ++ + +R YDS+             KP Q V    
Sbjct: 938  LFS-MDIIPVPVHVGGVHWCMAIIHMKNKTIRYYDSM------------GKPNQTVLNAL 984

Query: 68   PQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFD 127
              +L++      +    ++D + +  V +VPQQ  GS DCGVF  MF  Y+    +L F 
Sbjct: 985  ESYLREESIDKRKQPFDTSD-FLIENVPNVPQQTNGS-DCGVFSCMFAEYITRNRQLTFS 1042

Query: 128  SSHGHYFRKKIAVDIFPGDI 147
              H  YFRKK+ ++I  G++
Sbjct: 1043 QEHMEYFRKKMILEICGGEL 1062

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194770407|ref|XP_001967285.1| GF16000 [Drosophila ananassae] gi|190614561|gb|EDV30085.1| GF16000 [Drosophila ananassae]

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 16/144 (11%)

Query: 6    DLMSKLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQV 65
            DL SK     D+I +PV+  G HW +A+  +R R +R YDS+          +  +P+  
Sbjct: 917  DLFSK-----DIIPVPVHCNGVHWCMAIIHMRDRTIRYYDSMG---------KPNQPVLD 962

Query: 66   VFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLD 125
                +LQ     + R +      +++  + DVPQQ  GS DCGVF  MF  Y+     L 
Sbjct: 963  ALENYLQSESL-DKRKQPFDTSSFRIESMPDVPQQTNGS-DCGVFSCMFAEYISRDQPLT 1020

Query: 126  FDSSHGHYFRKKIAVDIFPGDIAL 149
            F   H  YFRKK+ ++I  G++ L
Sbjct: 1021 FSQEHMDYFRKKMVLEICDGELWL 1044

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281360439|ref|NP_787955.2| CG11023, isoform C [Drosophila melanogaster] gi|272406833|gb|AAO41164.2| CG11023, isoform C [Drosophila melanogaster]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 77/142 (54%), Gaps = 16/142 (11%)

Query: 6   DLMSKLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQV 65
           DL SK     D+I +PV+  G HW +A+  LR + +R YDS           +  +P+  
Sbjct: 355 DLFSK-----DIIPVPVHCNGVHWCMAIIHLRNKTIRYYDS---------KGKPNRPVLD 400

Query: 66  VFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLD 125
              ++L++   +  + +  ++D + +  V+++P+Q  GS DCG+F  MF  Y+   + + 
Sbjct: 401 ALEKYLREESIFKPKKQFDTSD-FVIESVQNIPRQLDGS-DCGIFSCMFAEYITCDVPIT 458

Query: 126 FDSSHGHYFRKKIAVDIFPGDI 147
           F  S   YFRKK+A++I  G++
Sbjct: 459 FTQSEMLYFRKKMALEIVDGEL 480

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241678633|ref|XP_002412604.1| sentrin/sumo-specific protease, putative [Ixodes scapularis] gi|215506406|gb|EEC15900.1| sentrin/sumo-specific protease, putative [Ixodes scapularis]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 10/132 (7%)

Query: 16  DMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVG 75
           D++ +P++    HW LA  D R + +  YDS+ + RE    L K   LQ+      QD  
Sbjct: 97  DIVLVPLHFTM-HWCLATIDFRKKHIAYYDSMGSSRERHNCLHK---LQLYLEAESQDKR 152

Query: 76  FYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFR 135
            + +  E     PWK++++ D+PQQ  GS DCG+F   +   +    K+ F   H  YFR
Sbjct: 153 GHGLDWE-----PWKLQVISDLPQQHNGS-DCGMFTCQYAECVSRDAKISFGQQHMPYFR 206

Query: 136 KKIAVDIFPGDI 147
           K++  +I  G +
Sbjct: 207 KRVVYEILHGQL 218

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48596411|emb|CAD92822.1| CG11023 protein [Drosophila melanogaster]

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 77/142 (54%), Gaps = 16/142 (11%)

Query: 6   DLMSKLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQV 65
           DL SK     D+I +PV+  G HW +A+  LR + +R YDS           +  +P+  
Sbjct: 55  DLFSK-----DIIPVPVHCNGVHWCMAIIHLRNKTIRYYDS---------KGKPNRPVLD 100

Query: 66  VFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLD 125
              ++L++   +  + +  ++D + +  V+++P+Q  GS DCG+F  MF  Y+   + + 
Sbjct: 101 ALEKYLREESIFKPKKQFDTSD-FVIESVQNIPRQLDGS-DCGIFSCMFAEYITCDVPIT 158

Query: 126 FDSSHGHYFRKKIAVDIFPGDI 147
           F  S   YFRKK+A++I  G++
Sbjct: 159 FTQSEMLYFRKKMALEIVDGEL 180

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
FB|FBgn0031208	480	CG11023 [Drosophila melanogast	0.845	0.262	0.288	2.2e-10
TAIR|locus:2130864	489	ESD4 "EARLY IN SHORT DAYS 4" [	0.785	0.239	0.302	1.5e-07
UNIPROTKB|F1NYU6	247	F1NYU6 "Uncharacterized protei	0.771	0.465	0.271	2.8e-06
TAIR|locus:2157141	921	AT5G45570 [Arabidopsis thalian	0.872	0.141	0.257	8.6e-06
UNIPROTKB|E1BYD7	454	E1BYD7 "Uncharacterized protei	0.771	0.253	0.271	9e-06
ZFIN|ZDB-GENE-060810-183	598	si:rp71-56k2.4 "si:rp71-56k2.4	0.771	0.192	0.286	1.3e-05
DICTYBASE|DDB_G0292290	769	DDB_G0292290 "Sentrin-specific	0.798	0.154	0.270	1.8e-05
TAIR|locus:2077632	502	ULP1A "UB-like protease 1A" [A	0.785	0.233	0.279	3.6e-05
FB|FBgn0052110	411	CG32110 [Drosophila melanogast	0.818	0.296	0.291	4.4e-05
UNIPROTKB|H9L083	612	SENP1 "Uncharacterized protein	0.778	0.189	0.253	6.1e-05

FB|FBgn0031208 CG11023 [Drosophila melanogaster (taxid:7227)]

 Score = 155 (59.6 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 41/142 (28%), Positives = 72/142 (50%)

Query:     6 DLMSKLFTDVDMIFIPVNLGGDHWVXXXXXXXXXXMRIYDSLVTFREDKTYLRKFKPLQV 65
             DL SK     D+I +PV+  G HW           +R YDS     + K      +P+  
Sbjct:   355 DLFSK-----DIIPVPVHCNGVHWCMAIIHLRNKTIRYYDS-----KGKPN----RPVLD 400

Query:    66 VFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLD 125
                ++L++   +  + +  ++D + +  V+++P+Q  GS DCG+F  MF  Y+   + + 
Sbjct:   401 ALEKYLREESIFKPKKQFDTSD-FVIESVQNIPRQLDGS-DCGIFSCMFAEYITCDVPIT 458

Query:   126 FDSSHGHYFRKKIAVDIFPGDI 147
             F  S   YFRKK+A++I  G++
Sbjct:   459 FTQSEMLYFRKKMALEIVDGEL 480

GO:0006508 "proteolysis" evidence=IEA

GO:0016926 "protein desumoylation" evidence=ISS

GO:0016929 "SUMO-specific protease activity" evidence=ISS

TAIR|locus:2130864 ESD4 "EARLY IN SHORT DAYS 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 39/129 (30%), Positives = 58/129 (44%)

Query:    14 DVDMIFIPVNLGGDHWVXXXXXXXXXXMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQD 73
             D DMIF+P++ G  HW           +   DSL     D   L           +++ D
Sbjct:   367 DCDMIFVPIHRGV-HWTLAVINNRESKLLYLDSLNGV--DPMILN-------ALAKYMGD 416

Query:    74 VGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHY 133
                     ++  A+ W +  V+D+PQQ+ G  DCG+FML +  +   GL L F   H  Y
Sbjct:   417 EANEKSGKKID-ANSWDMEFVEDLPQQKNGY-DCGMFMLKYIDFFSRGLGLCFSQEHMPY 474

Query:   134 FRKKIAVDI 142
             FR + A +I
Sbjct:   475 FRLRTAKEI 483

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0009909 "regulation of flower development" evidence=RCA;IMP

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0016929 "SUMO-specific protease activity" evidence=IDA

GO:0016926 "protein desumoylation" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0010074 "maintenance of meristem identity" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

UNIPROTKB|F1NYU6 F1NYU6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 112 (44.5 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 35/129 (27%), Positives = 62/129 (48%)

Query:    16 DMIFIPVNLGGDHWVXXXXXXXXXXMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVG 75
             D+I +P++L   HW           +  +DS    + DK         + V  Q+LQ+  
Sbjct:   125 DIILVPIHLRS-HWTLVVVDVRKKTITYFDSFGK-KGDKI-------CETVL-QYLQEES 174

Query:    76 FYNIRPELQSADPWKVRIVK--DVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHY 133
             +     +L S++ W +  ++  ++PQQ  GS DCGVFM  +  Y+     + F  ++  Y
Sbjct:   175 WEKQNVKLSSSE-WTLHSMESHEIPQQSNGS-DCGVFMCKYADYVSRDKPITFTENNMPY 232

Query:   134 FRKKIAVDI 142
             FRK++  +I
Sbjct:   233 FRKRMVWEI 241

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

TAIR|locus:2157141 AT5G45570 [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 8.6e-06, P = 8.6e-06
 Identities = 35/136 (25%), Positives = 58/136 (42%)

Query:    10 KLFTDVDMIFIPVNLGGDHWVXXXXXXXXXXMRIYDSLVTFREDKTYLRKFKPLQVVFPQ 69
             K F DVD ++  + + G+HWV          + +YDS+ +   D     +   +  + P 
Sbjct:   763 KWFVDVDHLYAYLFVNGNHWVALDIDLTNKRVNVYDSIPSLTTDTEMAIQCMFVMTMIPA 822

Query:    70 WLQDVGFYNIRPELQSADPWKVRIVKDVPQQ-EPGSGDCGVFMLMFTMYLMFGLKLD-FD 127
              L        R    S   WK RI K +P+  +PG  DC ++ + +   L  G   D   
Sbjct:   823 MLSSFIPSKQRRRSYSKLEWK-RITK-IPENLDPG--DCAIYSIKYIECLALGKSFDGLC 878

Query:   128 SSHGHYFRKKIAVDIF 143
               +    R K+AV++F
Sbjct:   879 DENMQSLRTKLAVEMF 894

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|E1BYD7 E1BYD7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 112 (44.5 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 35/129 (27%), Positives = 62/129 (48%)

Query:    16 DMIFIPVNLGGDHWVXXXXXXXXXXMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVG 75
             D+I +P++L   HW           +  +DS    + DK         + V  Q+LQ+  
Sbjct:   332 DIILVPIHLRS-HWTLVVVDVRKKTITYFDSFGK-KGDKI-------CETVL-QYLQEES 381

Query:    76 FYNIRPELQSADPWKVRIVK--DVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHY 133
             +     +L S++ W +  ++  ++PQQ  GS DCGVFM  +  Y+     + F  ++  Y
Sbjct:   382 WEKQNVKLSSSE-WTLHSMESHEIPQQSNGS-DCGVFMCKYADYVSRDKPITFTENNMPY 439

Query:   134 FRKKIAVDI 142
             FRK++  +I
Sbjct:   440 FRKRMVWEI 448

GO:0006508 "proteolysis" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0016929 "SUMO-specific protease activity" evidence=IEA

ZFIN|ZDB-GENE-060810-183 si:rp71-56k2.4 "si:rp71-56k2.4" [Danio rerio (taxid:7955)]

 Score = 112 (44.5 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 37/129 (28%), Positives = 61/129 (47%)

Query:    16 DMIFIPVNLGGDHWVXXXXXXXXXXMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVG 75
             D+I +P++LG  HW           +R YDS+    +D   L       ++   +L++  
Sbjct:   475 DVILVPLHLGV-HWSLAVVDFKSKSVRSYDSMGQRHDDICDL-------ILL--YLKEEF 524

Query:    76 FYNIRPELQSADPWKVRIVK--DVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHY 133
                   +L     W V  ++  ++PQQ+ GS DCGVF+  +  Y+  G  L F  +H  Y
Sbjct:   525 KVKKGKDLD-VSKWIVSSLRPSEIPQQKNGS-DCGVFICKYADYISRGRNLTFRQNHMPY 582

Query:   134 FRKKIAVDI 142
             FRK +  +I
Sbjct:   583 FRKAMIWEI 591

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0292290 DDB_G0292290 "Sentrin-specific protease 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 112 (44.5 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 36/133 (27%), Positives = 64/133 (48%)

Query:    11 LFTDVDMIFIPVNLGGDHWVXXXXXXXXXXMRIYDSLVTFREDKTYLRKFKPLQVVFPQW 70
             LF ++D I IP++LG +HW              YDSL+    +K  L+K +       ++
Sbjct:   643 LF-EMDKIIIPIHLG-NHWCLAVINFKAKQFEYYDSLLG--SNKECLKKLR-------KY 691

Query:    71 LQDVGFYNIRPE-LQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSS 129
             + D    N + E   + D ++  + K++P Q+ G  DCGVFM  +  +   G  L F   
Sbjct:   692 ISDE-MENKKKEGAVNLDEFQDYMPKEIPIQQNGY-DCGVFMCKYAEFCSKGANLTFTQE 749

Query:   130 HGHYFRKKIAVDI 142
                 +R+++ ++I
Sbjct:   750 EITQYRRRMVLEI 762

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

TAIR|locus:2077632 ULP1A "UB-like protease 1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 36/129 (27%), Positives = 53/129 (41%)

Query:    14 DVDMIFIPVNLGGDHWVXXXXXXXXXXMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQD 73
             D D IFIP+++   HW            +  DS    RE K        L   F   ++D
Sbjct:   380 DCDKIFIPIHMN-IHWTLAVINIKDQKFQYLDSFKG-REPKI----LDALARYFVDEVRD 433

Query:    74 VGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHY 133
                 ++         W+   V+D+P Q  G  DCG+FM+ +  +   GL L F      Y
Sbjct:   434 KSEVDL-----DVSRWRQEFVQDLPMQRNGF-DCGMFMVKYIDFYSRGLDLCFTQEQMPY 487

Query:   134 FRKKIAVDI 142
             FR + A +I
Sbjct:   488 FRARTAKEI 496

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0016926 "protein desumoylation" evidence=IDA

GO:0016929 "SUMO-specific protease activity" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

FB|FBgn0052110 CG32110 [Drosophila melanogaster (taxid:7227)]

 Score = 105 (42.0 bits), Expect = 4.4e-05, P = 4.4e-05
 Identities = 40/137 (29%), Positives = 63/137 (45%)

Query:    11 LFTDVDMIFIPVNLGGDHWVXXXXXXXXXXMRIYDSLVTFREDKTYLRKF-KPLQVVFPQ 69
             LF+ +D+I +PV+    HW           M  Y+S    R D   +R   K LQ+    
Sbjct:   285 LFS-MDLILVPVHQMLVHWCLVIIDLPAKTMLYYNS--RGRGDPNLMRALVKYLQMESED 341

Query:    70 WLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSS 129
              L   G       L +++ +++   ++VPQQ+    DCGVF+ MF  YL     + F   
Sbjct:   342 KL---GLC-----LDTSE-FRIEDAQNVPQQD-NMNDCGVFVCMFAEYLTRDAPITFSKK 391

Query:   130 HGHYFRKKIAVDIFPGD 146
                YFR K+ +++  GD
Sbjct:   392 DMKYFRTKMVLEL-TGD 407

GO:0008233 "peptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

GO:0016926 "protein desumoylation" evidence=ISS

GO:0016929 "SUMO-specific protease activity" evidence=ISS

UNIPROTKB|H9L083 SENP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 106 (42.4 bits), Expect = 6.1e-05, P = 6.1e-05
 Identities = 33/130 (25%), Positives = 57/130 (43%)

Query:    15 VDMIFIPVNLGGDHWVXXXXXXXXXXMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDV 74
             VD++ +P++LG  HW           +  YDS+     +            +  Q+L+  
Sbjct:   489 VDLLLVPIHLGV-HWCLAVVDFRKKTITYYDSMGGINSEACR---------ILLQYLKQE 538

Query:    75 GFYNIRPELQSADPWKVRIVK--DVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGH 132
                  R E  + + W +   K  ++PQQ  GS DCG+F   +   +     ++F   H  
Sbjct:   539 SLDKKRKEFDT-NGWSLLSKKSQEIPQQMNGS-DCGMFACKYADCITKDKPINFTQQHMP 596

Query:   133 YFRKKIAVDI 142
             YFRK++A +I
Sbjct:   597 YFRKRMAWEI 606

GO:0006508 "proteolysis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0010724 "regulation of definitive erythrocyte differentiation" evidence=IEA

GO:0016926 "protein desumoylation" evidence=IEA

GO:0016929 "SUMO-specific protease activity" evidence=IEA

GO:0032435 "negative regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	LOW CONFIDENCE prediction!
3rd Layer	3.4.22.68	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	149
pfam02902	216	pfam02902, Peptidase_C48, Ulp1 protease family, C-	3e-22
COG5160	578	COG5160, ULP1, Protease, Ulp1 family [Posttranslat	2e-15
PLN03189	490	PLN03189, PLN03189, Protease specific for SMALL UB	1e-11

>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain

 Score = 87.9 bits (218), Expect = 3e-22
 Identities = 44/138 (31%), Positives = 75/138 (54%), Gaps = 6/138 (4%)

Query: 8   MSKLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVF 67
             K   DVD+I+IP+N  G HWVL + +L  + + I DSL++   +    ++ +P+  + 
Sbjct: 76  NKKWLFDVDIIYIPINWDGKHWVLLIINLPKKTITILDSLISLHTEAV-KKRIRPIDNML 134

Query: 68  PQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFD 127
           P  + +           +  P++++ +  VPQQ P SGDCG ++L F   L  G+  +F 
Sbjct: 135 PYLMSEALKKEQDDPDLT--PFEIKRLTKVPQQ-PNSGDCGPYVLKFIELLAEGVPFEFL 191

Query: 128 SSHGH--YFRKKIAVDIF 143
           ++      FRKK+AVDI+
Sbjct: 192 TADKDVDRFRKKLAVDIY 209

This domain contains the catalytic triad Cys-His-Asn. Length = 216

>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

 Score = 71.9 bits (176), Expect = 2e-15
 Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 18/131 (13%)

Query: 14  DVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLV-TFREDKTYLRKFKPLQVVFPQWLQ 72
               IFIP+N+   HW LA+ D   + +  +DSL  T      +LR +     +  ++  
Sbjct: 452 SKKYIFIPINISY-HWFLAIIDNPKKNILYFDSLANTHDPVLEFLRSY-----LLDEYKI 505

Query: 73  DVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGH 132
                         DP        VPQQ  GS DCGVF+ MF  Y +      F  +   
Sbjct: 506 QHD----------KDPQIKMKHCKVPQQRNGS-DCGVFVCMFIRYFLENPPEQFSKNDRP 554

Query: 133 YFRKKIAVDIF 143
             RK +A  I 
Sbjct: 555 RARKNMAHTIK 565

Length = 578

>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

 Score = 60.6 bits (147), Expect = 1e-11
 Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 12/129 (9%)

Query: 14  DVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQD 73
           D D IF+P++    HW LA+ + + ++ +  DSL   R+ K        L   +   ++D
Sbjct: 368 DCDKIFVPIHQE-IHWTLAVINKKDQKFQYLDSL-KGRDPKI----LDALAKYYVDEVKD 421

Query: 74  VGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHY 133
               +I         W+   V+D+P+Q+ G  DCG+FM+ +  +   GL L F   H  Y
Sbjct: 422 KSEKDI-----DVSSWEQEFVEDLPEQKNGY-DCGMFMIKYIDFYSRGLGLCFGQEHMPY 475

Query: 134 FRKKIAVDI 142
           FR + A +I
Sbjct: 476 FRLRTAKEI 484

Length = 490

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
PLN03189	490	Protease specific for SMALL UBIQUITIN-RELATED MODI	100.0
KOG0778	511	consensus Protease, Ulp1 family [Posttranslational	100.0
PF02902	216	Peptidase_C48: Ulp1 protease family, C-terminal ca	99.95
COG5160	578	ULP1 Protease, Ulp1 family [Posttranslational modi	99.92
KOG3246	223	consensus Sentrin-specific cysteine protease (Ulp1	99.79
PF00770	183	Peptidase_C5: Adenovirus endoprotease; InterPro: I	97.99
PRK14848	317	deubiquitinase SseL; Provisional	97.95
KOG0779	595	consensus Protease, Ulp1 family [Posttranslational	97.73
PRK11836	403	deubiquitinase; Provisional	97.66
PF03290	423	Peptidase_C57: Vaccinia virus I7 processing peptid	97.58
PF03421	177	YopJ: YopJ Serine/Threonine acetyltransferase; Int	94.58
PRK15371	287	effector protein YopJ; Provisional	88.34
PF12252	1439	SidE: Dot/Icm substrate protein; InterPro: IPR0210	85.09

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

Probab=100.00  E-value=2.8e-33  Score=224.98  Aligned_cols=124  Identities=29%  Similarity=0.564  Sum_probs=112.5

Q ss_pred             ccccCEEEEeeecCCCeEEEEEEEcCCCeEEEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcccCCCCCCCCCCceE
Q 032006           12 FTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKV   91 (149)
Q Consensus        12 ~~~~d~I~iPin~~~~HW~l~vvd~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~w~~   91 (149)
                      +.++|+||||||. +.||+|+|||+++++|.|||||++  .+....+.+       ..|+..+...+.+.++ +.+.|+.
T Consensus       366 Lfs~D~IFIPIh~-n~HWsLaVId~k~k~I~yyDSLgg--~~~~vL~~L-------~rYL~~E~kdK~g~d~-D~s~W~~  434 (490)
T PLN03189        366 LIDCDKIFVPIHQ-EIHWTLAVINKKDQKFQYLDSLKG--RDPKILDAL-------AKYYVDEVKDKSEKDI-DVSSWEQ  434 (490)
T ss_pred             cccCceEEeeeec-CCeeEEEEEEcCCCeEEEEeCCCC--CCHHHHHHH-------HHHHHHHHhhhcCCCc-chhccee
Confidence            4578999999999 899999999999999999999998  766666665       8899988888877788 8889988


Q ss_pred             EeccCCCcCCCCCCCchHHHHHHHHHHhcCCCceeccccHHHHHHHHHHHHhcCCc
Q 032006           92 RIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDI  147 (149)
Q Consensus        92 ~~~~~~p~Q~n~s~dCGvfvl~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~l  147 (149)
                      ..+.++|||.|| +|||||||+||++++.|.+++|+|+||+.+|++|+.||++.++
T Consensus       435 ~~~~~vPQQ~NG-~DCGVFVL~yAE~~SrG~~LtFSQeDMp~fRrRma~EIl~~r~  489 (490)
T PLN03189        435 EFVEDLPEQKNG-YDCGMFMIKYIDFYSRGLGLCFGQEHMPYFRLRTAKEILRLKA  489 (490)
T ss_pred             ccCCCCCCCCCC-CCHHHHHHHHHHHHcCCCCCCcChhhhHHHHHHHHHHHHHhhc
Confidence            666799999999 9999999999999999999999999999999999999998764

>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-33  Score=229.00  Aligned_cols=126  Identities=33%  Similarity=0.644  Sum_probs=116.6

Q ss_pred             hccccCEEEEeeecCCCeEEEEEEEcCCCeEEEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcccCCCCCCCCCCce
Q 032006           11 LFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWK   90 (149)
Q Consensus        11 ~~~~~d~I~iPin~~~~HW~l~vvd~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~w~   90 (149)
                      ++.+.|+||+|||. +.||+|+|||+++++|.|||||++. ++..+ +++       ++|+++|+..+.+.++ +.+.|+
T Consensus       386 ~if~~d~i~vPIH~-~vHW~l~vid~r~k~i~y~DS~~~~-~nr~~-~aL-------~~Yl~~E~~~k~~~~~-d~s~w~  454 (511)
T KOG0778|consen  386 DIFDKDIIFVPIHL-GVHWCLAVIDLREKTIEYYDSLGGG-PNRIC-DAL-------AKYLQDESRDKSKKDF-DVSGWT  454 (511)
T ss_pred             CccccceeEeeeec-CceEEEEEEEcccceEEEeeccCCC-CcchH-HHH-------HHHHHHHHhhhhcCCC-Cccchh
Confidence            46788999999999 9999999999999999999999961 34444 676       9999999999988888 999999


Q ss_pred             EEeccCCCcCCCCCCCchHHHHHHHHHHhcCCCceeccccHHHHHHHHHHHHhcCCcC
Q 032006           91 VRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDIA  148 (149)
Q Consensus        91 ~~~~~~~p~Q~n~s~dCGvfvl~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~l~  148 (149)
                      .....++|||.|| +|||+|+|+|++|++.+.|++|++.||++||++||+||+..+|+
T Consensus       455 ~~~~~~iP~Q~Ng-~DCG~f~c~~~~~~s~~~p~~ftq~dmp~fR~~m~~eI~~~~l~  511 (511)
T KOG0778|consen  455 IEFVQNIPQQRNG-SDCGMFVCKYADYISRDVPLTFTQQDMPYFRKKMAKEILHLKLL  511 (511)
T ss_pred             hhhhhccccccCC-CccceEEeeechhhccCCCcccChhhhHHHHHHHHHHHHhhhcC
Confidence            9888999999999 99999999999999999999999999999999999999999875

>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification

Probab=99.95  E-value=4.7e-27  Score=174.21  Aligned_cols=126  Identities=35%  Similarity=0.605  Sum_probs=93.5

Q ss_pred             hccccCEEEEeeecCCCeEEEEEEEcCCCeEEEEcCCCCCCCCH--HHHhhhcchHHHHHHHHHHHhcccCCCCCCCCCC
Q 032006           11 LFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDK--TYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADP   88 (149)
Q Consensus        11 ~~~~~d~I~iPin~~~~HW~l~vvd~~~~~i~~~DSl~~~~~~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~   88 (149)
                      ++.++++|++|+|.+++||+|++|+++.++|.+|||+++  ...  .....+..    +..++...+....+... +..+
T Consensus        79 ~l~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~--~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~-~~~~  151 (216)
T PF02902_consen   79 NLFDKDYIFIPININNNHWVLLVIDLPKKRIYVYDSLGS--SNNDKRYKRVIEN----IIPFLKREYKKKEGRDP-DKSP  151 (216)
T ss_dssp             TGGGSSEEEEEEEETTTEEEEEEEETTTTEEEEE-TTST--SSH-HHHHHHHHH----HHHHHHHHHHHHHSSCT--TTT
T ss_pred             cccccCEEEEEEechhhccceeEEcccccEEEEEecccc--ccccccchhhhhh----hhhhhhhcccccccccc-ccce
Confidence            889999999999999999999999999999999999999  544  22222211    23444333322222222 4567


Q ss_pred             ceEEeccCCCcCCCCCCCchHHHHHHHHHHhcCCCce----eccccHHHHHHHHHHHHhc
Q 032006           89 WKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLD----FDSSHGHYFRKKIAVDIFP  144 (149)
Q Consensus        89 w~~~~~~~~p~Q~n~s~dCGvfvl~~~~~~~~~~~~~----~~~~~~~~~R~~~~~~l~~  144 (149)
                      |+......+|||.|+ +|||+|||+||++++.+.+.+    ++++++..+|.+++.++..
T Consensus       152 ~~~~~~~~~pqQ~n~-~dCGv~vl~~~~~~~~~~~~~~~~~l~~~~i~~~r~~~a~~~~e  210 (216)
T PF02902_consen  152 FKIVRPPNVPQQPNG-YDCGVYVLKFMECLLEGPSFDFSQELTEEDIKNFRKKLAVDLYE  210 (216)
T ss_dssp             CEEEEECTS-SSSSS-SCHHHHHHHHHHHHHCTHHSTGCCSBTGHHHHHHHHHHHH----
T ss_pred             eeecccccccCCCCC-CCcHHHHHHHHHHHHhCCCCcccccCCHHHHHHHHHHHHhhccc
Confidence            887776799999999 999999999999999998764    7899999999999988754

; InterPro: IPR003653 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins contain cysteine peptidases belonging to MEROPS peptidase family C48 (Ulp1 endopeptidase family, clan CE). The protein fold of the peptidase domain for members of this family resembles that of adenain, the type example for clan CE. This group of sequences also contains a number of hypothetical proteins, which have not yet been characterised, and non-peptidase homologues. These are proteins that have either been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of the peptidases in the family. The Ulp1 endopeptidase family contain the deubiquitinating enzymes (DUB) that can de-conjugate ubiquitin or ubiquitin-like proteins from ubiquitin-conjugated proteins. They can be classified in 3 families according to sequence homology [, ]: Ubiquitin carboxyl-terminal hydrolase (UCH) (see PDOC00127 from PROSITEDOC), Ubiquitin-specific processing protease (UBP) (see PDOC00750 from PROSITEDOC), and ubiquitin-like protease (ULP) specific for de-conjugating ubiquitin-like proteins. In contrast to the UBP pathway, which is very redundant (16 UBP enzymes in yeast), there are few ubiquitin-like proteases (only one in yeast, Ulp1). Ulp1 catalyses two critical functions in the SUMO/Smt3 pathway via its cysteine protease activity. Ulp1 processes the Smt3 C-terminal sequence (-GGATY) to its mature form (-GG), and it de-conjugates Smt3 from the lysine epsilon-amino group of the target protein []. Crystal structure of yeast Ulp1 bound to Smt3 [] revealed that the catalytic and interaction interface is situated in a shallow and narrow cleft where conserved residues recognise the Gly-Gly motif at the C-terminal extremity of Smt3 protein. Ulp1 adopts a novel architecture despite some structural similarity with other cysteine protease. The secondary structure is composed of seven alpha helices and seven beta strands. The catalytic domain includes the central alpha helix, beta-strands 4 to 6, and the catalytic triad (Cys-His-Asp). This profile is directed against the C-terminal part of ULP proteins that displays full proteolytic activity [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1EUV_A 2HL8_A 2HKP_A 2HL9_A 1XT9_A 2BKQ_C 2BKR_A 2IO1_E 1TH0_B 1TGZ_A ....

>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=6.5e-26  Score=182.32  Aligned_cols=121  Identities=31%  Similarity=0.429  Sum_probs=105.6

Q ss_pred             hccccCEEEEeeecCCCeEEEEEEEcCCCeEEEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcccCCCCCCCCCCce
Q 032006           11 LFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWK   90 (149)
Q Consensus        11 ~~~~~d~I~iPin~~~~HW~l~vvd~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~w~   90 (149)
                      ++.+.++||+|||. ..||.|.+||.++..|.+||||.+  ....+.+.+       ..|+.+|++...+.     ++|.
T Consensus       449 dif~~k~I~iPIni-~~HW~l~II~~~~~~i~~~DSLan--~~~~v~~~L-------~~Y~ldE~k~~~~k-----~~~~  513 (578)
T COG5160         449 DIFSKKYIFIPINI-SYHWFLAIIDNPKKNILYFDSLAN--THDPVLEFL-------RSYLLDEYKIQHDK-----DPQI  513 (578)
T ss_pred             CccccceEEEEecc-cceEEEEEeecCcceeEEeccccc--CcHHHHHHH-------HHHHHHHHhcccCC-----chhh
Confidence            45677899999999 999999999999999999999999  667777776       89999997655443     3354


Q ss_pred             EEeccCCCcCCCCCCCchHHHHHHHHHHhcCCCceeccccHHHHHHHHHHHHhcCCc
Q 032006           91 VRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDI  147 (149)
Q Consensus        91 ~~~~~~~p~Q~n~s~dCGvfvl~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~l  147 (149)
                      .....++|||.|| +|||||||+++++++++.+..|+..|++.+|+.|+++|+..++
T Consensus       514 ~~~~~~vPqQ~Ng-~DCGV~vc~~~~~~~~~~p~~f~~nd~~r~Rk~m~h~i~~~qi  569 (578)
T COG5160         514 KMKHCKVPQQRNG-SDCGVFVCMFIRYFLENPPEQFSKNDRPRARKNMAHTIKDLQI  569 (578)
T ss_pred             hhhcCCCCCCCCC-CccceEEEEeeeecccCChhhcCccchHHHHHHHHHHHHHHHH
Confidence            4445899999999 9999999999999999999999999999999999999987665

>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only]

Probab=99.79  E-value=1.4e-18  Score=126.78  Aligned_cols=112  Identities=25%  Similarity=0.304  Sum_probs=75.2

Q ss_pred             hccccCEEEEeeec--------CCCeEEEEEEEcCCCeEEEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcccCCCC
Q 032006           11 LFTDVDMIFIPVNL--------GGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPE   82 (149)
Q Consensus        11 ~~~~~d~I~iPin~--------~~~HW~l~vvd~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~   82 (149)
                      ++.++++||+|||.        ||+||+|+|+..++++.++|||+.+  .+....+.+   .+.+..+++....      
T Consensus        84 ~l~~k~~iflpiNDn~~~~~~~GGsHWSLLV~sr~~~~f~hyDS~~n--~nt~~a~~l---~~kl~~ll~~~~~------  152 (223)
T KOG3246|consen   84 DLNDKDFIFLPINDNSNVTRASGGSHWSLLVFSRPDGKFYHYDSLSN--GNTKDAKSL---MKKLRALLKKKFA------  152 (223)
T ss_pred             hcCCCceEEEEecCCCcccccCCCcceEEEEEEeeCCcEEEeecccC--CCcHHHHHH---HHHHHHHHhhhhh------
Confidence            77899999999999        3579999999999999999999999  553333222   1112444433210      


Q ss_pred             CCCCCCceEEeccCCCcCCCCCCCchHHHHHHHHHHhcC----CCce----eccccHHHHHHHHHHHH
Q 032006           83 LQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFG----LKLD----FDSSHGHYFRKKIAVDI  142 (149)
Q Consensus        83 ~~~~~~w~~~~~~~~p~Q~n~s~dCGvfvl~~~~~~~~~----~~~~----~~~~~~~~~R~~~~~~l  142 (149)
                             + .....+|||.|| +|||++||.+.+.++..    .-.+    ...+-+..+|.++..-|
T Consensus       153 -------~-~~~~~~~qQqNg-yDCG~hV~~~t~~l~~~~~~~~~~~~~~~~~~~~i~~lr~~l~~LI  211 (223)
T KOG3246|consen  153 -------K-RVECKCLQQQNG-YDCGLHVCCNTRVLAERLLRCPYATSSQLLVVDLIKALREELLDLI  211 (223)
T ss_pred             -------h-cccccChhhhcC-CchhHHHHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHHHH
Confidence                   1 113678899999 99999999988766543    2222    22234456666655443

>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.99  E-value=7.4e-05  Score=53.46  Aligned_cols=94  Identities=20%  Similarity=0.335  Sum_probs=45.9

Q ss_pred             cCEEEEeeec-----CCCeEEEEEEEcCCCeEEEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcc-cCCCCCCCCCC
Q 032006           15 VDMIFIPVNL-----GGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFY-NIRPELQSADP   88 (149)
Q Consensus        15 ~d~I~iPin~-----~~~HW~l~vvd~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~   88 (149)
                      ...--..||.     ||.||..++.|+..++++.|||.+-  .+++..+.- .+.  ...+++..+.. ....-+     
T Consensus        17 ~k~acAIVNT~~retGGvHWlA~Aw~P~s~t~YmFDPfGf--sd~~L~qiY-~Fe--Ye~llrRSAL~~~~dRCv-----   86 (183)
T PF00770_consen   17 HKPACAIVNTGGRETGGVHWLAFAWDPRSRTFYMFDPFGF--SDQKLKQIY-QFE--YEGLLRRSALSSTPDRCV-----   86 (183)
T ss_dssp             TS-EEEEEESS-TTT--S-EEEEEEETTTTEEEEE-TT-----HHHHHHHH-------HHHHHHHHHHH-TTSEE-----
T ss_pred             CCcceEEEecCCcccCceeEEEEEecCCcceEEEeCCCCC--CHHHHHHHH-hhh--HHHHHHHHhhcCCCCceE-----
Confidence            3444667777     5899999999999999999999988  655443211 111  01222222111 111111     


Q ss_pred             ceEEeccCCCcCCCCCCCchHHHHHHHHHHhc
Q 032006           89 WKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMF  120 (149)
Q Consensus        89 w~~~~~~~~p~Q~n~s~dCGvfvl~~~~~~~~  120 (149)
                       +++. ..-..|-..|..||.|+|.|+.++..
T Consensus        87 -~Lvk-stqtVQ~p~SaaCGLFC~lFL~aF~~  116 (183)
T PF00770_consen   87 -TLVK-STQTVQCPCSAACGLFCCLFLHAFVH  116 (183)
T ss_dssp             -EEEE-E-EE-S-TT---HHHHHHHHHHHHHH
T ss_pred             -EEEe-ccceeeccCchhHHHHHHHHHHHHHh
Confidence             2222 22224554459999999999998854

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.

>PRK14848 deubiquitinase SseL; Provisional

Probab=97.95  E-value=5e-05  Score=57.48  Aligned_cols=86  Identities=15%  Similarity=0.208  Sum_probs=49.7

Q ss_pred             CEEEEeeecCCCeEEEEEEEc--CCCeEEEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcccCCCCCCCCCCceEEe
Q 032006           16 DMIFIPVNLGGDHWVLALADL--RARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRI   93 (149)
Q Consensus        16 d~I~iPin~~~~HW~l~vvd~--~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~w~~~~   93 (149)
                      +.=+||||. ++||+|+++..  ++.+..+|.|++.  -+....+.+      +..   +..   .+..  ...+-.+  
T Consensus       189 ~nevF~INt-g~HWil~~~~Ki~~kiKC~iFNs~~~--l~eNs~~~i------i~~---ak~---ag~~--~e~di~f--  249 (317)
T PRK14848        189 HNEVFLINT-GDHWLLCLFYKLAEKIKCLIFNTYYD--LNENTKQEI------IEA---AKI---AGIS--ENEDVNF--  249 (317)
T ss_pred             cceEEEecC-CCcEEEEEhHHhhhhceEEEeecHhh--hhhhHHHHH------HHH---HHh---hCcc--cCCceEE--
Confidence            344599998 99999998753  3456678999877  332222222      111   000   0000  1111222  


Q ss_pred             ccCCCcCCCCCCCchHHHHHHHHHHhcC
Q 032006           94 VKDVPQQEPGSGDCGVFMLMFTMYLMFG  121 (149)
Q Consensus        94 ~~~~p~Q~n~s~dCGvfvl~~~~~~~~~  121 (149)
                       ...-.|.+-+..||.|||.+++.+..+
T Consensus       250 -Ie~nLQqnVpngCGlFv~~aIq~l~~~  276 (317)
T PRK14848        250 -IETNLQNNVPNGCGLFCYHTIQLLSNA  276 (317)
T ss_pred             -eehhhhhhCCCcchHHHHHHHHHHHhc
Confidence             223345555599999999999977654

>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=4e-05  Score=65.21  Aligned_cols=120  Identities=20%  Similarity=0.194  Sum_probs=65.7

Q ss_pred             hccccCEEEEeeecCCCeEEEEEEEcCCCeE------EEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcccCCCCC-
Q 032006           11 LFTDVDMIFIPVNLGGDHWVLALADLRARRM------RIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPEL-   83 (149)
Q Consensus        11 ~~~~~d~I~iPin~~~~HW~l~vvd~~~~~i------~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-   83 (149)
                      .+.+.++|++|+|. ..||.+.++.......      ...++.......        ..+..+...++.+........+ 
T Consensus       434 d~~~k~yi~~P~~E-~~hw~laiic~p~~e~es~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~  504 (595)
T KOG0779|consen  434 DLFNKDYVFVPTHE-RFHWKLAIICNPDLETETPRPRLELLILKLSADF--------PIVENILDFMKVASIYNNELIVT  504 (595)
T ss_pred             ccccceeEEecCch-HhhhhccccccCccccCccccchhhhhhcccccc--------chhhhhhhhhhhcccccCccccc
Confidence            34567799999999 9999999986553321      122222110000        1111123333333221111100 


Q ss_pred             -CCCCCceEEe--------ccCCCcCCCCCCCchHHHHHHHHHHhcCCCc-------------eeccccHHHHHHHHHH
Q 032006           84 -QSADPWKVRI--------VKDVPQQEPGSGDCGVFMLMFTMYLMFGLKL-------------DFDSSHGHYFRKKIAV  140 (149)
Q Consensus        84 -~~~~~w~~~~--------~~~~p~Q~n~s~dCGvfvl~~~~~~~~~~~~-------------~~~~~~~~~~R~~~~~  140 (149)
                       .....|.+..        ....|||.|. .|||+|++.|++.+..+++.             +|.+.++..+|..+-.
T Consensus       505 ~~~~~~~~~~~~~~~~~s~~v~~p~q~n~-~dcG~~~~~~v~~f~e~~~e~~~~~~~~~~~l~~~~~~~~~~~r~~~r~  582 (595)
T KOG0779|consen  505 EDLELEEELPRRLPRGKSETVREPQQNND-VDCGSFVLEFVERFIEDAPERFNIEDEGTINLEWFPPKEILKFRDEIRN  582 (595)
T ss_pred             ccccccccccccCcccccccccccCccCc-ccchhhHHHHHHHhhhChhhhcccccccccccccCCchHHhhhhhhhhc
Confidence             0111222110        0122899999 99999999999999877642             2667777777776543

>PRK11836 deubiquitinase; Provisional

Probab=97.66  E-value=0.00024  Score=54.97  Aligned_cols=101  Identities=23%  Similarity=0.323  Sum_probs=53.8

Q ss_pred             cCEEEEeeecCCCeEEEEEEE--------cCCCeEEEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHH-hcccCCCCCCC
Q 032006           15 VDMIFIPVNLGGDHWVLALAD--------LRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDV-GFYNIRPELQS   85 (149)
Q Consensus        15 ~d~I~iPin~~~~HW~l~vvd--------~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~   85 (149)
                      ++.=+||||. ++||+|+++.        .++.+..+|.|+..-..+++  +..+.+...+..-+..+ ...+..... .
T Consensus       219 k~~elFpINt-g~HWil~~l~Ki~~~~~~~ekiKC~IFNs~~~l~~d~~--~t~q~ii~a~~~~~~~~~~~~~ik~~~-~  294 (403)
T PRK11836        219 KEVQLFPINT-GGHWILVSLQKIVNEKNNTQQIKCVIFNSLRALGHDKE--NSLKRVINSFNSELMGEMSNNNIKVHL-T  294 (403)
T ss_pred             ccceEEEecC-CCcEEEEEeHHhhhcccccceeEEEEEecHhhhccchh--hHHHHHHHhhhhhhhhhcchhhhcccc-c
Confidence            5667899998 9999999873        23456778898877332221  11111122212112222 111222222 2


Q ss_pred             CCCceEEeccCCCcCCCCCCCchHHHHHHHHHHhcCC
Q 032006           86 ADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGL  122 (149)
Q Consensus        86 ~~~w~~~~~~~~p~Q~n~s~dCGvfvl~~~~~~~~~~  122 (149)
                      ...-.+   ...-.|++-+..||.||++.++-++.+.
T Consensus       295 e~ei~f---ie~dLQq~vpngCGlFv~~a~Qe~i~q~  328 (403)
T PRK11836        295 EPEIIF---LHADLQQYLSQSCGAFVCMAAQEVIEQR  328 (403)
T ss_pred             CCceEE---EechhhhcCCCccceehHHHHHHHHHHh
Confidence            222222   2233444555999999998887555443

>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.58  E-value=0.00042  Score=55.32  Aligned_cols=37  Identities=16%  Similarity=0.266  Sum_probs=33.7

Q ss_pred             cccCEEEEeeecCCCeEEEEEEEcCCCeEEEEcCCCCC
Q 032006           13 TDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTF   50 (149)
Q Consensus        13 ~~~d~I~iPin~~~~HW~l~vvd~~~~~i~~~DSl~~~   50 (149)
                      .+..++.+|++- .+||.++++|.+++-+.+|||-+..
T Consensus       229 ~~~RyvmFgfcY-~~Hwkc~IfDk~~~~v~FydSgG~~  265 (423)
T PF03290_consen  229 SKKRYVMFGFCY-MSHWKCCIFDKEKKIVYFYDSGGNI  265 (423)
T ss_pred             ccccEEEeeeee-hhcceEEEEeccccEEEEEcCCCCC
Confidence            356789999999 9999999999999999999999883

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C57 (clan CE). The type example is vaccinia virus I7 processing peptidase (vaccinia virus); protein I7 is expressed in the late phase of infection [].

>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp

Probab=94.58  E-value=0.44  Score=34.66  Aligned_cols=88  Identities=14%  Similarity=0.202  Sum_probs=50.0

Q ss_pred             EEEEeeecCCCeEEEEEEE-c--CCCeEEEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcccCCCCCCCCCCceEEe
Q 032006           17 MIFIPVNLGGDHWVLALAD-L--RARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKVRI   93 (149)
Q Consensus        17 ~I~iPin~~~~HW~l~vvd-~--~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~w~~~~   93 (149)
                      ..++|...++.|-+.+-|- .  .+.+|.+++|-........ ....       .+...+. ..+.+      .++++. 
T Consensus        73 R~Iv~~~~~~~H~~a~Dvr~~~~~k~SlI~~Epa~~~~~~~~-l~~~-------~~~~~~~-~~~~~------~~~~~~-  136 (177)
T PF03421_consen   73 RAIVNLGGDGIHHVALDVRHTPNGKPSLIVFEPASFYGMKPA-LAGY-------TKLAEEA-RQKLL------PNAKFA-  136 (177)
T ss_pred             EEEEeCCCCCCcEEEEEEeecCCCCceEEEEccccccCCcch-hhhH-------HHHHHHH-HhccC------CCcEEE-
Confidence            3566654445666655554 2  2568999999976222222 1111       1111111 11111      233443 


Q ss_pred             ccCCCcCCCCCCCchHHHHHHHHHHhcC
Q 032006           94 VKDVPQQEPGSGDCGVFMLMFTMYLMFG  121 (149)
Q Consensus        94 ~~~~p~Q~n~s~dCGvfvl~~~~~~~~~  121 (149)
                      +....-|... +|||+|.+.++.....+
T Consensus       137 ~ie~diQkS~-~dC~IFsLs~AkK~~~~  163 (177)
T PF03421_consen  137 VIEMDIQKSP-SDCGIFSLSLAKKMYKE  163 (177)
T ss_pred             EEecccccCc-CcchhhHHHHHHHHhhc
Confidence            3677899999 99999999999887643

causes a rapid induction of the mitogen-activated protein kinase (MAPK; including the ERK, JNK and p38 pathways) and nuclear factor kappaB (NF-kappaB) signalling pathways that would typically result in cytokine production and initiation of the innate immune response. However, these pathways are rapidly inhibited promoting apoptosis. YopJ has been shown to block phosphorylation of active site residues []. It has also been shown that YopJ acetyltransferase is activated by eukaryotic host cell inositol hexakisphosphate []. Serine and threonine acetylation is yet another complication to the control of signalling pathways and may be a may be a widespread mode of biochemical regulation of endogenous processes in eukaryotic cells. It has been shown that YopJ is a serine/threonine acetyltransferase []. It acetylates the serine and threonine residues in the phosphorylation sites of MAPK kinases and nuclear factor kappaB, preventing their activation by phosphorylation and the inhibition of these signalling pathways []. This entry contains YopJ and related proteins.

>PRK15371 effector protein YopJ; Provisional

Probab=88.34  E-value=5  Score=31.45  Aligned_cols=26  Identities=23%  Similarity=0.529  Sum_probs=20.8

Q ss_pred             cCCCcCCCCCCCchHHHHHHHHHHhcC
Q 032006           95 KDVPQQEPGSGDCGVFMLMFTMYLMFG  121 (149)
Q Consensus        95 ~~~p~Q~n~s~dCGvfvl~~~~~~~~~  121 (149)
                      ...--|... +|||+|.+.++......
T Consensus       161 ie~d~QkS~-~dC~mFSL~~AkK~~~e  186 (287)
T PRK15371        161 VEMDIQRSS-SECGIFSLALAKKLYLE  186 (287)
T ss_pred             EecccccCc-ccchhhhHHHHHHHhhh
Confidence            455578888 99999999999777544

>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria

Probab=85.09  E-value=2.6  Score=38.60  Aligned_cols=35  Identities=23%  Similarity=0.547  Sum_probs=26.2

Q ss_pred             EEEeeecC------CCeEEEEEEEcCCCeEEEEcCCCCCCCCHH
Q 032006           18 IFIPVNLG------GDHWVLALADLRARRMRIYDSLVTFREDKT   55 (149)
Q Consensus        18 I~iPin~~------~~HW~l~vvd~~~~~i~~~DSl~~~~~~~~   55 (149)
                      =|+||-.|      ..||+.++ --.....+.||||+.  ...+
T Consensus        48 gfmpvltgv~p~~~sghwimli-kg~gn~y~lfdplg~--~sg~   88 (1439)
T PF12252_consen   48 GFMPVLTGVSPRQDSGHWIMLI-KGQGNQYYLFDPLGK--TSGE   88 (1439)
T ss_pred             CCceeecCcCCCCcCceeEEEE-EcCCCceEEeccccc--cccc
Confidence            37787773      57999987 455667899999999  5443

There is little literature describing the family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	149
2xph_A	238	Crystal Structure Of Human Senp1 With The Bound Cob		7e-05
2xre_A	230	Detection Of Cobalt In Previously Unassigned Human		8e-05
2iyc_A	226	Senp1 Native Structure Length = 226		8e-05
2ckg_A	225	The Structure Of Senp1 Sumo-2 Co-Complex Suggests A		2e-04

>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt Length = 238

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 15  VDMIFIPVNLGGDHWVXXXXXXXXXXMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDV 74
           VD++ +P++LG  HW           +  YDS+     +            +  Q+L+  
Sbjct: 115 VDILLVPIHLGV-HWCLAVVDFRKKNITYYDSMGGINNEACR---------ILLQYLKQE 164
Query: 75  GFYNIRPELQSADPWKV--RIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGH 132
                R E  + + W++  +  +++PQQ  GS DCG+F   +   +     ++F   H  
Sbjct: 165 SIDKKRKEFDT-NGWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRPINFTQQHMP 222
Query: 133 YFRKKIAVDIF 143
           YFRK++  +I 
Sbjct: 223 YFRKRMVWEIL 233

>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1 Structure Length = 230

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 15  VDMIFIPVNLGGDHWVXXXXXXXXXXMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDV 74
           VD++ +P++LG  HW           +  YDS+     +            +  Q+L+  
Sbjct: 107 VDILLVPIHLGV-HWCLAVVDFRKKNITYYDSMGGINNEACR---------ILLQYLKQE 156
Query: 75  GFYNIRPELQSADPWKV--RIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGH 132
                R E  + + W++  +  +++PQQ  GS DCG+F   +   +     ++F   H  
Sbjct: 157 SIDKKRKEFDT-NGWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRPINFTQQHMP 214
Query: 133 YFRKKIAVDIF 143
           YFRK++  +I 
Sbjct: 215 YFRKRMVWEIL 225

>pdb|2IYC|A Chain A, Senp1 Native Structure Length = 226

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 14/132 (10%)
Query: 14  DVDMIFIPVNLGGDHWVXXXXXXXXXXMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQD 73
            VD++ +P++LG  HW           +  YDS+     +            +  Q+L+ 
Sbjct: 102 SVDILLVPIHLGV-HWCLAVVDFRKKNITYYDSMGGINNEACR---------ILLQYLKQ 151
Query: 74  VGFYNIRPELQSADPWKV--RIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHG 131
                 R E  + + W++  +  +++PQQ  GS DCG+F   +   +     ++F   H 
Sbjct: 152 ESIDKKRKEFDT-NGWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRPINFTQQHM 209
Query: 132 HYFRKKIAVDIF 143
            YFRK++  +I 
Sbjct: 210 PYFRKRMVWEIL 221

>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A Structural Basis For Discrimination Between Sumo Paralogues During Processing Length = 225

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 14  DVDMIFIPVNLGGDHWVXXXXXXXXXXMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQD 73
            VD++ +P++LG  HW           +  YDS+     +            +  Q+L+ 
Sbjct: 102 SVDILLVPIHLGV-HWCLAVVDFRKKNITYYDSMGGINNEACR---------ILLQYLKQ 151
Query: 74  VGFYNIRPELQSADPWKVRIVKD-VPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGH 132
                 R E  + + W++   K  +PQQ  GS DCG+F   +   +     ++F   H  
Sbjct: 152 ESIDKKRKEFDT-NGWQLFSKKSQIPQQMNGS-DCGMFACKYADCITKDRPINFTQQHMP 209
Query: 133 YFRKKIAVDIF 143
           YFRK++  +I 
Sbjct: 210 YFRKRMVWEIL 220

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	3e-17
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	1e-16
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	3e-14
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	2e-12
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	8e-08

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221

 Score = 74.0 bits (181), Expect = 3e-17
 Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 13/131 (9%)

Query: 12  FTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWL 71
              +D IF P+NL   HW L + DL+ + +   DSL     +         LQ    +++
Sbjct: 98  IDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSN-GPNAMSFAILTDLQ----KYV 152

Query: 72  QDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHG 131
            +   + I  +          I  D PQQ  G  DCG+++ M T+Y      LDFD    
Sbjct: 153 MEESKHTIGEDFD-------LIHLDCPQQPNGY-DCGIYVCMNTLYGSADAPLDFDYKDA 204

Query: 132 HYFRKKIAVDI 142
              R+ IA  I
Sbjct: 205 IRMRRFIAHLI 215

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238

 Score = 72.9 bits (178), Expect = 1e-16
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 14/134 (10%)

Query: 12  FTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWL 71
              VD++ +P++  G HW LA+ D R + +  YDS+     +   +           Q+L
Sbjct: 112 VFSVDILLVPIH-LGVHWCLAVVDFRKKNITYYDSMGGINNEACRILL---------QYL 161

Query: 72  QDVGFYNIRPELQSADPWKVRIVK--DVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSS 129
           +       R E    + W++   K  ++PQQ  GS DCG+F   +   +     ++F   
Sbjct: 162 KQESIDKKRKEF-DTNGWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRPINFTQQ 219

Query: 130 HGHYFRKKIAVDIF 143
           H  YFRK++  +I 
Sbjct: 220 HMPYFRKRMVWEIL 233

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226

 Score = 66.0 bits (160), Expect = 3e-14
 Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 10/140 (7%)

Query: 4   REDLMSKLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPL 63
           +         + ++I +P++    HW L + DLR + ++  DS+          R  + L
Sbjct: 92  KRWTKGVNLFEQEIILVPIH-RKVHWSLVVIDLRKKCLKYLDSMGQKGH-----RICEIL 145

Query: 64  QVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLK 123
                   +     ++                ++PQQ  GS DCG+F   +  Y+     
Sbjct: 146 LQYLQDESKTKRNSDLNL---LEWTHHSMKPHEIPQQLNGS-DCGMFTCKYADYISRDKP 201

Query: 124 LDFDSSHGHYFRKKIAVDIF 143
           + F       FRKK+  +I 
Sbjct: 202 ITFTQHQMPLFRKKMVWEIL 221

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Length = 186

 Score = 60.8 bits (147), Expect = 2e-12
 Identities = 18/107 (16%), Positives = 31/107 (28%), Gaps = 24/107 (22%)

Query: 16  DMIFIPVNLGGDHWVLALADLRARRMRI---YDSLVTFREDKTYLRKFKPLQVVFPQWLQ 72
            ++F+P+N    HW L + D R +       YDS+      + YL            +  
Sbjct: 63  PIVFLPINQPNAHWSLLVVDRRNKDAVAAYHYDSMAQKDPQQRYLADMA-------AYHL 115

Query: 73  DVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLM 119
            + +                    +  Q  G    G  +L     L 
Sbjct: 116 GLDYQQTHEM-------------PIAIQSDGY-SAGDHVLTGIEVLA 148

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Length = 212

 Score = 48.6 bits (115), Expect = 8e-08
 Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 24/132 (18%)

Query: 12  FTDVDMIFIPVNL------GGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQV 65
             +  ++F+ +N       GG HW L +          YDS    R +  + ++      
Sbjct: 80  LPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSH--SRSNSVHAKQVA---- 133

Query: 66  VFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLD 125
                        +   L         + +  P Q+    DCG++++  T  L       
Sbjct: 134 -----------EKLEAFLGRKGDKLAFVEEKAPAQQNSY-DCGMYVICNTEALCQNFFRQ 181

Query: 126 FDSSHGHYFRKK 137
              S        
Sbjct: 182 QTESLLQLLTPA 193

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	100.0
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	100.0
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	99.97
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	99.94
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	99.91
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	99.9
4ekf_A	204	Adenain; alpha and beta protein (A+B), hydrolase;	98.11

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A

Probab=100.00  E-value=1.8e-33  Score=210.44  Aligned_cols=126  Identities=25%  Similarity=0.468  Sum_probs=111.2

Q ss_pred             hccccCEEEEeeecCCCeEEEEEEEcCCCeEEEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcccCCCCCCCCCCce
Q 032006           11 LFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWK   90 (149)
Q Consensus        11 ~~~~~d~I~iPin~~~~HW~l~vvd~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~w~   90 (149)
                      .+.++|+||+|||. ++||+|++||+++++|.+|||+++  .+....+.+       ..|+..++..+.+..+ +..+|+
T Consensus        99 ~l~~~~~i~iPin~-~~HW~l~vi~~~~~~i~~~DSl~~--~~~~~~~~l-------~~~l~~e~~~k~~~~~-~~~~w~  167 (226)
T 1th0_A           99 NLFEQEIILVPIHR-KVHWSLVVIDLRKKCLKYLDSMGQ--KGHRICEIL-------LQYLQDESKTKRNSDL-NLLEWT  167 (226)
T ss_dssp             CGGGSSEEEEEEEE-TTEEEEEEEETTTTEEEEECTTCC--CCHHHHHHH-------HHHHHHHHHHHTSCCC-CGGGCE
T ss_pred             CcccCCEEEEeEEe-CcEEEEEEEEcCCCceEEEcCCCC--CchHHHHHH-------HHHHHHHHHHhcCCCC-Ccccce
Confidence            45578899999999 999999999999999999999999  666555554       7788877766666677 778898


Q ss_pred             EEe--ccCCCcCCCCCCCchHHHHHHHHHHhcCCCceeccccHHHHHHHHHHHHhcCCcC
Q 032006           91 VRI--VKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDIA  148 (149)
Q Consensus        91 ~~~--~~~~p~Q~n~s~dCGvfvl~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~l~  148 (149)
                      +..  ..++|||.|| +|||||||+||++++.+.+++|++++|+.+|++|+.+|++++||
T Consensus       168 ~~~~~~~~~PqQ~Ng-~DCGvfvl~~~~~~~~~~~~~f~q~dm~~~R~~~~~ei~~~~l~  226 (226)
T 1th0_A          168 HHSMKPHEIPQQLNG-SDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQLL  226 (226)
T ss_dssp             EEECCTTTSCCCCSS-SCHHHHHHHHHHHHTTTCCCCCCGGGHHHHHHHHHHHHHHTCCC
T ss_pred             eccccCCCCCCCCCC-CCHHHHHHHHHHHHhCCCCCccChhhHHHHHHHHHHHHHhCCcC
Confidence            753  4699999999 99999999999999999999999999999999999999999986

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A

Probab=100.00  E-value=3.7e-33  Score=210.23  Aligned_cols=126  Identities=28%  Similarity=0.579  Sum_probs=110.7

Q ss_pred             hccccCEEEEeeecCCCeEEEEEEEcCCCeEEEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcccCCCCCCCCCCce
Q 032006           11 LFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWK   90 (149)
Q Consensus        11 ~~~~~d~I~iPin~~~~HW~l~vvd~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~w~   90 (149)
                      .+.++|+||+|||. ++||+|++||.++++|.+|||+++  .+....+.+       ..|+..++..+.+..+ +..+|+
T Consensus       111 ~l~~~~~i~iPin~-~~HW~L~vi~~~~~~i~~~DSl~~--~~~~~~~~l-------~~~L~~e~~~k~~~~~-~~~~w~  179 (238)
T 2xph_A          111 DVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGG--INNEACRIL-------LQYLKQESIDKKRKEF-DTNGWQ  179 (238)
T ss_dssp             CGGGSSEEEEEEEE-TTEEEEEEEETTTTEEEEECTTCC--CCHHHHHHH-------HHHHHHHHHHHHCSCC-CCTTCE
T ss_pred             CcccCCEEEEcccC-CCceEEEEEEcccceEEEeecccC--CCHHHHHHH-------HHHHHHHHHHhcCCCc-Ccccce
Confidence            45578999999999 899999999999999999999998  666555444       7777777766656667 778998


Q ss_pred             EEe--ccCCCcCCCCCCCchHHHHHHHHHHhcCCCceeccccHHHHHHHHHHHHhcCCcC
Q 032006           91 VRI--VKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDIA  148 (149)
Q Consensus        91 ~~~--~~~~p~Q~n~s~dCGvfvl~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~l~  148 (149)
                      +..  ..++|||.|| +|||||||+||++++.+.+++|++++|+.+|++|+.+|++++||
T Consensus       180 ~~~~~~~~~PqQ~Ng-~DCGvfvl~~~e~~~~~~~~~f~q~dm~~~R~~m~~eil~~~ll  238 (238)
T 2xph_A          180 LFSKKSQEIPQQMNG-SDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRKLL  238 (238)
T ss_dssp             EEECCSSSSCCCSBG-GGHHHHHHHHHHHHHTTCCCCCCGGGHHHHHHHHHHHHHHTCCC
T ss_pred             ecccCCCCCCCCCCC-CCHHHHHHHHHHHHhcCCCCCcChhhHHHHHHHHHHHHHhCCCC
Confidence            753  4799999999 99999999999999999999999999999999999999999986

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A

Probab=99.97  E-value=3.2e-30  Score=192.24  Aligned_cols=124  Identities=27%  Similarity=0.447  Sum_probs=101.4

Q ss_pred             hccccCEEEEeeecCCCeEEEEEEEcCCCeEEEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcccCCCCCCCCCCce
Q 032006           11 LFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWK   90 (149)
Q Consensus        11 ~~~~~d~I~iPin~~~~HW~l~vvd~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~w~   90 (149)
                      .+.++|+||+|||.+++||+|++|++++++|.+|||++.. .+....+.    .+.+..|+..++..+.+      .+|+
T Consensus        97 ~~~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~-~~~~~~~i----~~~l~~~l~~e~~~~~~------~~~~  165 (221)
T 1euv_A           97 QIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNG-PNAMSFAI----LTDLQKYVMEESKHTIG------EDFD  165 (221)
T ss_dssp             CGGGCSEEEEEEEETTTEEEEEEEETTTTEEEEECSSCCS-CCHHHHHH----HHHHHHHHHHHTTSSSC------TTCE
T ss_pred             CcccCCEEEEEEEcCCCeEEEEEEEcCCCEEEEEecCCCC-CcchHHHH----HHHHHHHHHHHHHHhcC------CCce
Confidence            3457899999999977999999999999999999999862 23221111    23347788777654433      3456


Q ss_pred             EEeccCCCcCCCCCCCchHHHHHHHHHHhcCCCceeccccHHHHHHHHHHHHhcCCc
Q 032006           91 VRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDI  147 (149)
Q Consensus        91 ~~~~~~~p~Q~n~s~dCGvfvl~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~l  147 (149)
                      +.. ..+|||.|| +|||||||+||++++.+.+++|++++|+.+|++|+.+|++++|
T Consensus       166 ~~~-~~~PqQ~N~-~DCGvfv~~~~~~~~~~~~l~f~~~d~~~~R~~i~~~Il~~~l  220 (221)
T 1euv_A          166 LIH-LDCPQQPNG-YDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTDAL  220 (221)
T ss_dssp             EEE-ECCCCCSSS-STHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred             Eee-cCCCCCCCC-cCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHhccC
Confidence            544 799999999 9999999999999999999999999999999999999999886

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A

Probab=99.94  E-value=1.1e-26  Score=172.07  Aligned_cols=116  Identities=18%  Similarity=0.219  Sum_probs=90.2

Q ss_pred             hccccCEEEEeeec------CCCeEEEEEEEcCCCeEEEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcccCCCCCC
Q 032006           11 LFTDVDMIFIPVNL------GGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQ   84 (149)
Q Consensus        11 ~~~~~d~I~iPin~------~~~HW~l~vvd~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~   84 (149)
                      .+.++++||+|||.      +++||+|++|+.++++|.+|||+++  .+....+.+   .+.+..++..+    .     
T Consensus        79 ~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~~i~~~DSl~~--~n~~~~~~l---~~~l~~~l~~~----~-----  144 (212)
T 2bkr_A           79 DLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSR--SNSVHAKQV---AEKLEAFLGRK----G-----  144 (212)
T ss_dssp             TGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTT--TTHHHHHHH---HHHHHHHHSCT----T-----
T ss_pred             ccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCCeEEEEeCCCC--CCHHHHHHH---HHHHHHHhCCc----c-----
Confidence            45689999999996      5899999999999999999999998  665554333   23334444221    1     


Q ss_pred             CCCCceEEeccCCCcCCCCCCCchHHHHHHHHHHhcCC----C----ceeccccHHHHHHHHHHHHhc
Q 032006           85 SADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGL----K----LDFDSSHGHYFRKKIAVDIFP  144 (149)
Q Consensus        85 ~~~~w~~~~~~~~p~Q~n~s~dCGvfvl~~~~~~~~~~----~----~~~~~~~~~~~R~~~~~~l~~  144 (149)
                        .+|++.. .++|||.|| +|||||||+||++++.+.    +    .+|+++++..+|++|+..|.+
T Consensus       145 --~~~~~~~-~~~PqQ~N~-~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~  208 (212)
T 2bkr_A          145 --DKLAFVE-EKAPAQQNS-YDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYITKKRGEWKDLIAT  208 (212)
T ss_dssp             --CCCCEEE-CCCCCCSSS-STHHHHHHHHHHHHHHHHHSCCCCCHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             --ccceEeE-CCCCCCCCC-CcHHHHHHHHHHHHHHHhhhcCcccccccCCHHHHHHHHHHHHHHHHH
Confidence              1344443 789999999 999999999999998874    1    358899999999999988764

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A

Probab=99.91  E-value=1.7e-24  Score=157.52  Aligned_cols=110  Identities=20%  Similarity=0.192  Sum_probs=81.3

Q ss_pred             cCEEEEeeecCCCeEEEEEEEcCCCeE---EEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcccCCCCCCCCCCceE
Q 032006           15 VDMIFIPVNLGGDHWVLALADLRARRM---RIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWKV   91 (149)
Q Consensus        15 ~d~I~iPin~~~~HW~l~vvd~~~~~i---~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~w~~   91 (149)
                      +|+||+|||.+++||+|++|+.+++++   .+|||+++  .+... +.+   .+.+..++..        +.   .  ++
T Consensus        62 ~~~i~iPin~~~~HWsLlvi~~~~~~~~~~~~~DSl~~--~~~~~-~~l---~~~l~~~l~~--------~~---~--~~  122 (186)
T 2oix_A           62 PPIVFLPINQPNAHWSLLVVDRRNKDAVAAYHYDSMAQ--KDPQQ-RYL---ADMAAYHLGL--------DY---Q--QT  122 (186)
T ss_dssp             CSEEEEEEEETTTEEEEEEEECSSTTSCEEEEECCCSS--CCHHH-HHH---HHHHHHHTTC--------CG---G--GC
T ss_pred             cCEEEEEEeCCCCccEEEEEECCCCeeeeeEEEcCCCC--CCHHH-HHH---HHHHHHHhCC--------Cc---c--cc
Confidence            899999999988999999999999999   99999998  55442 122   2222333311        11   1  12


Q ss_pred             EeccCCCcCCCCCCCchHHHHHHHHHHhcC----CC---ceeccccHHHHHHHHHHHHhcC
Q 032006           92 RIVKDVPQQEPGSGDCGVFMLMFTMYLMFG----LK---LDFDSSHGHYFRKKIAVDIFPG  145 (149)
Q Consensus        92 ~~~~~~p~Q~n~s~dCGvfvl~~~~~~~~~----~~---~~~~~~~~~~~R~~~~~~l~~~  145 (149)
                       ...++|||.|| +|||||||.|+++++.+    ..   ..++.+++..+|++|...|.+.
T Consensus       123 -~~~~~PqQ~Ng-~DCGvfv~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~~  181 (186)
T 2oix_A          123 -HEMPIAIQSDG-YSAGDHVLTGIEVLAHRVLDGTFDYAGGRDLTDIEPDRGLIRDRLAQA  181 (186)
T ss_dssp             -EEECBCCCC---CCHHHHHHHHHHHHHHHHHHTCTTSTTTTCBTTCCCCHHHHHHHHHCC
T ss_pred             -ccCCCCCCCCC-CCHHHHHHHHHHHHHHHHhhcCccCCCcCCHHHHHHHHHHHHHHHHhc
Confidence             23689999999 99999999999998753    21   2477889999999999988765

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}

Probab=99.90  E-value=2.1e-23  Score=162.29  Aligned_cols=121  Identities=23%  Similarity=0.318  Sum_probs=97.7

Q ss_pred             hccccCEEEEeeecCCCeEEEEEEEcCC----------------------------------------------------
Q 032006           11 LFTDVDMIFIPVNLGGDHWVLALADLRA----------------------------------------------------   38 (149)
Q Consensus        11 ~~~~~d~I~iPin~~~~HW~l~vvd~~~----------------------------------------------------   38 (149)
                      ++.++|+||||||. +.||+|++|+.+.                                                    
T Consensus       117 dlf~kD~I~IPIn~-~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  195 (323)
T 3eay_A          117 NIFNKDYIFVPVNE-SSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLRTTSTLSLSAEDSQSTESN  195 (323)
T ss_dssp             CGGGCSEEEEEEEE-TTEEEEEEEECTTCSSCBCC---------------------------------------------
T ss_pred             ccccCCEEEEecCC-CCceEEEEEecCCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45678999999999 9999999999863                                                    


Q ss_pred             ----------CeEEEEcCCCCCCCC-HHHHhhhcchHHHHHHHHHHHhcccC--CCCCCCCCCceEEeccCCCcCCCCCC
Q 032006           39 ----------RRMRIYDSLVTFRED-KTYLRKFKPLQVVFPQWLQDVGFYNI--RPELQSADPWKVRIVKDVPQQEPGSG  105 (149)
Q Consensus        39 ----------~~i~~~DSl~~~~~~-~~~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~~w~~~~~~~~p~Q~n~s~  105 (149)
                                .+|.+||||++  .. ..+.+.+       +.|+..|+..+.  ...| +...|+... +.+|+|.|+ +
T Consensus       196 ~~~~~~~~k~pcIl~lDSL~~--~~~~~~~~~L-------r~YL~~E~~~k~~~~~~f-~~~~~~~~~-~~~P~Q~N~-~  263 (323)
T 3eay_A          196 MSVPKKMCKRPCILILDSLKA--ASVQNTVQNL-------REYLEVEWEVKLKTHRQF-SKTNMVDLC-PKVPKQDNS-S  263 (323)
T ss_dssp             ----CCCCBCSEEEEECSSCC--SSHHHHHHHH-------HHHHHHHHHHHHSSCCCC-CTTTSCEEC-CBCCCCCST-T
T ss_pred             cccccccCCCCeEEEEECCCC--CCcchHHHHH-------HHHHHHHHHhhcCCCcCC-CHhHceecc-CCCCCcCCC-C
Confidence                      26999999998  43 4555555       999999988653  3455 566787654 789999999 9


Q ss_pred             CchHHHHHHHHHHhcCCCc----------eeccccHHHHHHHHHHHHhc
Q 032006          106 DCGVFMLMFTMYLMFGLKL----------DFDSSHGHYFRKKIAVDIFP  144 (149)
Q Consensus       106 dCGvfvl~~~~~~~~~~~~----------~~~~~~~~~~R~~~~~~l~~  144 (149)
                      |||+|||+||+++..+.++          +|+.+++...|.++..-|..
T Consensus       264 DCGvfvl~~~e~~~~~~~~~f~~~~~~~~wf~~~~i~~kR~ei~~LI~~  312 (323)
T 3eay_A          264 DCGVYLLQYVESFFKDPIVNFELPIHLEKWFPRHVIKTKREDIRELILK  312 (323)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCCSSCBCTTSSCHHHHHTHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCCccccccccccccCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999988754          35667889999998877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	149
d1euva_	221	d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake	3e-16
d2iy1a1	225	d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H	2e-15
d1th0a_	226	d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H	6e-14
d2bkra1	212	d.3.1.7 (A:1-212) Sentrin-specific protease 8, SEN	2e-06

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.2 bits (171), Expect = 3e-16
 Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 13/131 (9%)

Query: 12  FTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWL 71
              +D IF P+NL   HW L + DL+ + +   DSL       ++       + V  +  
Sbjct: 98  IDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESK 157

Query: 72  QDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHG 131
             +G           + + + I  D PQQ  G  DCG+++ M T+Y      LDFD    
Sbjct: 158 HTIG-----------EDFDL-IHLDCPQQPNGY-DCGIYVCMNTLYGSADAPLDFDYKDA 204

Query: 132 HYFRKKIAVDI 142
              R+ IA  I
Sbjct: 205 IRMRRFIAHLI 215

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (166), Expect = 2e-15
 Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 10/132 (7%)

Query: 12  FTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWL 71
              VD++ +P++  G HW LA+ D R + +  YDS+             +  +++     
Sbjct: 100 VFSVDILLVPIH-LGVHWCLAVVDFRKKNITYYDSMGGINN--------EACRILLQYLK 150

Query: 72  QDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHG 131
           Q+      +    +      +  +++PQQ  GS D G+F   +   +     ++F   H 
Sbjct: 151 QESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGS-DAGMFACKYADCITKDRPINFTQQHM 209

Query: 132 HYFRKKIAVDIF 143
            YFRK++  +I 
Sbjct: 210 PYFRKRMVWEIL 221

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (156), Expect = 6e-14
 Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 10/144 (6%)

Query: 4   REDLMSKLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPL 63
           +         + ++I +P++    HW L + DLR + ++  DS+   ++           
Sbjct: 92  KRWTKGVNLFEQEIILVPIH-RKVHWSLVVIDLRKKCLKYLDSM--GQKGHRICEILL-- 146

Query: 64  QVVFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLK 123
                Q+LQD        +L   +     +      Q+    DCG+F   +  Y+     
Sbjct: 147 -----QYLQDESKTKRNSDLNLLEWTHHSMKPHEIPQQLNGSDCGMFTCKYADYISRDKP 201

Query: 124 LDFDSSHGHYFRKKIAVDIFPGDI 147
           + F       FRKK+  +I    +
Sbjct: 202 ITFTQHQMPLFRKKMVWEILHQQL 225

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 2e-06
 Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 24/132 (18%)

Query: 12  FTDVDMIFIPVNL------GGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQV 65
             +  ++F+ +N       GG HW L +          YDS    R +  + ++      
Sbjct: 80  LPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHS--RSNSVHAKQVA---- 133

Query: 66  VFPQWLQDVGFYNIRPELQSADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLD 125
                        +   L         + +  P Q+    DCG++++  T  L       
Sbjct: 134 -----------EKLEAFLGRKGDKLAFVEEKAPAQQNSY-DCGMYVICNTEALCQNFFRQ 181

Query: 126 FDSSHGHYFRKK 137
              S        
Sbjct: 182 QTESLLQLLTPA 193

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d2iy1a1	225	Sentrin-specific protease 1 {Human (Homo sapiens)	99.97
d1euva_	221	Ulp1 protease C-terminal domain {Baker's yeast (Sa	99.97
d1th0a_	226	Sentrin-specific protease 2, SENP2 {Human (Homo sa	99.97
d2bkra1	212	Sentrin-specific protease 8, SENP8 {Human (Homo sa	99.9
d1nlna_	203	Human adenovirus 2 proteinase, adenain {Mastadenov	98.07

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-30  Score=192.52  Aligned_cols=125  Identities=27%  Similarity=0.556  Sum_probs=103.4

Q ss_pred             hccccCEEEEeeecCCCeEEEEEEEcCCCeEEEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcccCCCCCCCCCCce
Q 032006           11 LFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWK   90 (149)
Q Consensus        11 ~~~~~d~I~iPin~~~~HW~l~vvd~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~w~   90 (149)
                      .+.+++.||+|+|. ++||+|++|+++.++|.+|||+++  .+......+       ..++..+...+....+ +...|+
T Consensus        99 ~~~~~~~I~iPin~-~~HW~l~vi~~~~~~i~~~DSl~~--~~~~~~~~i-------~~~l~~~~~~~~~~~~-~~~~~~  167 (225)
T d2iy1a1          99 DVFSVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGG--INNEACRIL-------LQYLKQESIDKKRKEF-DTNGWQ  167 (225)
T ss_dssp             CGGGSSEEEEEEEC-SSCEEEEEEETTTTEEEEECTTCC--CCHHHHHHH-------HHHHHHHHHHHHSSCC-CCTTCE
T ss_pred             ccccCCEEEEEEeC-CCCEEEEEEEeccceEEEEecCCC--CchHHHHHH-------HHHHHHHHHHhccCcc-Ccccce
Confidence            56689999999999 899999999999999999999999  766655554       3333333333333344 556776


Q ss_pred             EE--eccCCCcCCCCCCCchHHHHHHHHHHhcCCCceeccccHHHHHHHHHHHHhcCCc
Q 032006           91 VR--IVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDI  147 (149)
Q Consensus        91 ~~--~~~~~p~Q~n~s~dCGvfvl~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~l  147 (149)
                      ..  ....+|||.|| +|||+|||+||++++.|.+++|++++|+.+|++|+.+|++++|
T Consensus       168 ~~~~~~~~~pqQ~Ng-~DCGvfvl~~~~~~~~~~~~~~~q~~~~~~R~~~~~~l~~~~l  225 (225)
T d2iy1a1         168 LFSKKSQEIPQQMNG-SDAGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRKL  225 (225)
T ss_dssp             EEECCTTTSCCCCSS-STHHHHHHHHHHHHHTTCCCCCCGGGHHHHHHHHHHHHHTTCC
T ss_pred             ecccccccCCCCCCC-CChHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHhCcC
Confidence            54  34789999999 9999999999999999999999999999999999999999986

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.6e-30  Score=190.09  Aligned_cols=124  Identities=27%  Similarity=0.457  Sum_probs=100.9

Q ss_pred             hccccCEEEEeeecCCCeEEEEEEEcCCCeEEEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcccCCCCCCCCCCce
Q 032006           11 LFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPWK   90 (149)
Q Consensus        11 ~~~~~d~I~iPin~~~~HW~l~vvd~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~w~   90 (149)
                      .+.++|+||+|+|.+++||+|++||++.++|.+|||+++  ........+   .+.+..++..+...+.      ...|+
T Consensus        97 ~~~~~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~--~~~~~~~~i---~~~l~~~l~~~~~~~~------~~~~~  165 (221)
T d1euva_          97 QIDKLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSN--GPNAMSFAI---LTDLQKYVMEESKHTI------GEDFD  165 (221)
T ss_dssp             CGGGCSEEEEEEEETTTEEEEEEEETTTTEEEEECSSCC--SCCHHHHHH---HHHHHHHHHHHTTSSS------CTTCE
T ss_pred             chhhcceeEeeEecccceEEEEEeeccccceeeeccccC--CCcHHHHHH---HHHHHHHHHHHHHhhc------CCCCe
Confidence            467889999999997899999999999999999999988  433322222   2233666666554332      23456


Q ss_pred             EEeccCCCcCCCCCCCchHHHHHHHHHHhcCCCceeccccHHHHHHHHHHHHhcCCc
Q 032006           91 VRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDI  147 (149)
Q Consensus        91 ~~~~~~~p~Q~n~s~dCGvfvl~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~l  147 (149)
                      ... .++|||.|+ +|||+|||+||++++.|.+++|++.||+++|++++.+|++++|
T Consensus       166 ~~~-~~~PqQ~N~-~DCGvfvl~~~~~~~~~~~~~~~q~d~~~~R~~i~~~il~~~l  220 (221)
T d1euva_         166 LIH-LDCPQQPNG-YDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTDAL  220 (221)
T ss_dssp             EEE-ECCCCCSSS-STHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred             eee-ccCCCCCCC-CChHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHhhc
Confidence            543 689999999 9999999999999999999999999999999999999999886

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.4e-30  Score=190.21  Aligned_cols=127  Identities=24%  Similarity=0.459  Sum_probs=104.9

Q ss_pred             hhccccCEEEEeeecCCCeEEEEEEEcCCCeEEEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcccCCCCCCCCCCc
Q 032006           10 KLFTDVDMIFIPVNLGGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQSADPW   89 (149)
Q Consensus        10 ~~~~~~d~I~iPin~~~~HW~l~vvd~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~w   89 (149)
                      .++.++++||+|+|. ++||+|++|+.+++++.+|||+++  .+....+.+       ..++..+......... +...|
T Consensus        98 ~~l~~~~~i~iPin~-~~HW~L~vi~~~~~~i~~~DSl~~--~~~~~~~~i-------~~~l~~~~~~~~~~~~-~~~~~  166 (226)
T d1th0a_          98 VNLFEQEIILVPIHR-KVHWSLVVIDLRKKCLKYLDSMGQ--KGHRICEIL-------LQYLQDESKTKRNSDL-NLLEW  166 (226)
T ss_dssp             CCGGGSSEEEEEEEE-TTEEEEEEEETTTTEEEEECTTCC--CCHHHHHHH-------HHHHHHHHHHHTSCCC-CGGGC
T ss_pred             cCcccCCEEEEeEEc-CCceEEEEEEeccceEEEeccccC--CChHHHHHH-------HHHHHHHHHHhhCCCc-Ccccc
Confidence            467789999999999 999999999999999999999998  766665555       4555544443333332 34455


Q ss_pred             eEE--eccCCCcCCCCCCCchHHHHHHHHHHhcCCCceeccccHHHHHHHHHHHHhcCCcC
Q 032006           90 KVR--IVKDVPQQEPGSGDCGVFMLMFTMYLMFGLKLDFDSSHGHYFRKKIAVDIFPGDIA  148 (149)
Q Consensus        90 ~~~--~~~~~p~Q~n~s~dCGvfvl~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~l~  148 (149)
                      +..  .+..+|+|.|| +|||+|||+||++++.+.+++|++.+|+.+|++|+.+|++++|+
T Consensus       167 ~~~~~~~~~~pqQ~N~-~DCGvfvl~~~~~~~~~~~~~~tq~di~~~R~~i~~el~~~~l~  226 (226)
T d1th0a_         167 THHSMKPHEIPQQLNG-SDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQLL  226 (226)
T ss_dssp             EEEECCTTTSCCCCSS-SCHHHHHHHHHHHHTTTCCCCCCGGGHHHHHHHHHHHHHHTCCC
T ss_pred             eeeeeccCCCCCCCCC-CCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHcCCC
Confidence            433  35789999999 99999999999999999999999999999999999999999986

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.4e-23  Score=153.22  Aligned_cols=116  Identities=17%  Similarity=0.193  Sum_probs=87.5

Q ss_pred             hccccCEEEEeeecC------CCeEEEEEEEcCCCeEEEEcCCCCCCCCHHHHhhhcchHHHHHHHHHHHhcccCCCCCC
Q 032006           11 LFTDVDMIFIPVNLG------GDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFKPLQVVFPQWLQDVGFYNIRPELQ   84 (149)
Q Consensus        11 ~~~~~d~I~iPin~~------~~HW~l~vvd~~~~~i~~~DSl~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~   84 (149)
                      .+.++++||+|||.+      |+||+|++|+++.++|++|||+++  .+....+.+       .+.+.......      
T Consensus        79 ~~~~~~~ifiPIn~~~~~~~~g~HW~l~vi~~~~~~i~~~DSl~~--~~~~~~~~~-------~~~l~~~~~~~------  143 (212)
T d2bkra1          79 DLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKNSFFHYDSHSR--SNSVHAKQV-------AEKLEAFLGRK------  143 (212)
T ss_dssp             TGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGTEEEEECSSTT--TTHHHHHHH-------HHHHHHHHSCT------
T ss_pred             ChhhccEEEEecccccccccCcceeeeeeeccccceEEEecCCCc--CCHHHHHHH-------HHHHHHHhccc------
Confidence            677899999999963      689999999999999999999998  665555444       33444332211      


Q ss_pred             CCCCceEEeccCCCcCCCCCCCchHHHHHHHHHHhcCC----C----ceeccccHHHHHHHHHHHHhc
Q 032006           85 SADPWKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMFGL----K----LDFDSSHGHYFRKKIAVDIFP  144 (149)
Q Consensus        85 ~~~~w~~~~~~~~p~Q~n~s~dCGvfvl~~~~~~~~~~----~----~~~~~~~~~~~R~~~~~~l~~  144 (149)
                       ...++.. ...+|+|.|| +|||+|||+||++++.+.    .    -.++++++..+|++|...|++
T Consensus       144 -~~~~~~~-~~~~p~Q~N~-~DCGvfv~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~R~~l~~lI~~  208 (212)
T d2bkra1         144 -GDKLAFV-EEKAPAQQNS-YDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYITKKRGEWKDLIAT  208 (212)
T ss_dssp             -TCCCCEE-ECCCCCCSSS-STHHHHHHHHHHHHHHHHHSCCCCCHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             -cCceeee-ecccCCCCCC-CChHHHHHHHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHHHHH
Confidence             1223333 3789999999 999999999999986432    1    137889999999999877754

>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Human adenovirus 2 proteinase, adenain
species: Mastadenovirus H2 [TaxId: 10515]

Probab=98.07  E-value=3.9e-05  Score=53.01  Aligned_cols=94  Identities=17%  Similarity=0.294  Sum_probs=57.0

Q ss_pred             cCEEEEeeec-----CCCeEEEEEEEcCCCeEEEEcCCCCCCCCHHHHhhhc-chHHHHHHHHHHHhcccCCCCCCCCCC
Q 032006           15 VDMIFIPVNL-----GGDHWVLALADLRARRMRIYDSLVTFREDKTYLRKFK-PLQVVFPQWLQDVGFYNIRPELQSADP   88 (149)
Q Consensus        15 ~d~I~iPin~-----~~~HW~l~vvd~~~~~i~~~DSl~~~~~~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~   88 (149)
                      ...-...||.     ||.||..++.|+..++++.|||.+-  .+++..+.-+ .-..+++.-....   ....-+     
T Consensus        35 ~k~~~AIVNT~~retGG~HWlA~Aw~P~s~t~Y~FDPfGf--sd~~L~q~Y~FeY~~llkRSAL~~---spdRCv-----  104 (203)
T d1nlna_          35 HKLACAIVNTAGRETGGVHWMAFAWNPRSKTCYLFEPFGF--SDQRLKQVYQFEYESLLRRSAIAS---SPDRCI-----  104 (203)
T ss_dssp             TSCEEEEEESSCTTTCCCCEEEEEEETTTTEEEEECTTCC--CHHHHHHHHCCCCHHHHHHHHHHH---CTTSEE-----
T ss_pred             CccceeEEecCCcccCceeeEEeEecCCcCeEEEECCCCC--CHHHHHHHhhhhHHHHHHHHhhcC---CCCceE-----
Confidence            3345566777     5899999999999999999999998  6655432211 1112222211111   111111     


Q ss_pred             ceEEeccCCCcCCCCCCCchHHHHHHHHHHhc
Q 032006           89 WKVRIVKDVPQQEPGSGDCGVFMLMFTMYLMF  120 (149)
Q Consensus        89 w~~~~~~~~p~Q~n~s~dCGvfvl~~~~~~~~  120 (149)
                       +++. ..-..|-..|..||.|+|.|+.++..
T Consensus       105 -tlvk-stq~VQcp~SaaCGLFC~lFL~aF~~  134 (203)
T d1nlna_         105 -TLEK-STQSVQGPNSAACGLFCCMFLHAFAN  134 (203)
T ss_dssp             -EEEE-ECEECSCTTCCCHHHHHHHHHHHHHH
T ss_pred             -EEEe-ccceecCCCchhHHHHHHHHHHHHHh
Confidence             2222 22224555559999999999999965