Citrus Sinensis ID: 032022

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTFRAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRKSEVSQLNVFAASEEEDTCPICLEVKSSS
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEcccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHccccHHHHHHHHHcccccccccccccEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEEcccccccccccccccccccccccEEEEEccccccccccccccccccccEEEEccccccccccccccccccccccccccHcccHcHcHHHHcccccccccccHHHccEcccccHcccccEEEEEEccc
Coil and Loop (DISEMBL)
mggcccssrkphlhgtpvyyycppaleeresltshngtastftRGLLvdfhleastpdtfrapplplpydvvfgcppstdsesvgetvsggsfeTLAMCEvvedadcktqassliasprksevsqlnvfaaseeedtcpiclevksss
Flexible Loop (DISEMBL)
mggcccssrkphlhgtpVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTFRAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQAssliasprkseVSQLNVfaaseeedtcpiclevksss
Low Complexity Region (SEG)
MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTFRAPPLPLPYDVVFGCPPSTDsesvgetvsggsFETLAMCEVVEDADCKTQASSLIASPRKSEVSQLNVFAASEEEDTCPICLEVKSSS
Disordered region (IsUnstruct)
****CC***KPHLHGTPVYYYCPPALE*********GTASTFTRGLLVDFHLEASTPDTFRAPPLPLPYDVVFGC****************SFETLAMCEVVEDADC*******************************PIC*******
Disordered Region (DISOPRED)
********RK***HGTPVYYYCPPA**********************VDFHLEASTPDTFRAPPLPLPYDV*************************************************************EEEDTCPICLEVK***
Disordered Region (DISEMBL)
MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTFRAPPLPLPYDVVFGCPPS**********SGGSFETLAMCEVVEDADCKTQASSLIASPRKSEVSQLNVFAASEEEDTCPICLEVKSSS
Disordered Region (DISPRO)
************LHGTPVYYYCPPALE**ESL*****TASTFTRGLLVDFHLEASTPDTFRAPPLPLPYDVVFGCP***************************************ASPRKSEVSQLNVFAASEEEDTCPICLEVK***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTFRAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRKSEVSQLNVFAASEEEDTCPICLEVKSSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
255541644	199	protein binding protein, putative [Ricin	0.966	0.718	0.731	2e-54
224130328	186	predicted protein [Populus trichocarpa]	0.966	0.768	0.737	9e-54
224067912	185	predicted protein [Populus trichocarpa]	0.966	0.772	0.694	2e-49
356520392	191	PREDICTED: E3 ubiquitin-protein ligase A	0.966	0.748	0.655	2e-45
356560785	227	PREDICTED: uncharacterized protein LOC10	0.966	0.629	0.641	4e-45
356531973	184	PREDICTED: E3 ubiquitin-protein ligase A	0.952	0.766	0.620	1e-42
357504425	191	RING finger protein [Medicago truncatula	0.966	0.748	0.606	1e-41
356568411	184	PREDICTED: E3 ubiquitin-protein ligase A	0.952	0.766	0.613	4e-41
225454365	184	PREDICTED: E3 ubiquitin-protein ligase A	0.912	0.733	0.593	2e-38
79324959	189	RING-H2 finger B1A [Arabidopsis thaliana	0.952	0.746	0.589	7e-36

>gi|255541644|ref|XP_002511886.1| protein binding protein, putative [Ricinus communis] gi|223549066|gb|EEF50555.1| protein binding protein, putative [Ricinus communis]

 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/145 (73%), Positives = 120/145 (82%), Gaps = 2/145 (1%)

Query: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTF 60
           MGGCCCSSRKPHLHGTPVYYYCPPALEE ESLTSHNG AS F  GLL + +L  STPDTF
Sbjct: 9   MGGCCCSSRKPHLHGTPVYYYCPPALEEHESLTSHNGVASAFAAGLLAELNLNTSTPDTF 68

Query: 61  RAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRK 120
           RAPP PLPYD+V GC  S+DSES+ ET+SGGSFETLA CE +ED DC+T ASSL  SP+K
Sbjct: 69  RAPPAPLPYDMVLGCRRSSDSESIRETISGGSFETLATCEDLEDPDCRTLASSLPVSPKK 128

Query: 121 SEVSQL--NVFAASEEEDTCPICLE 143
            ++S+L  NV +A+EEED CPICLE
Sbjct: 129 PDISKLSENVVSATEEEDACPICLE 153

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130328|ref|XP_002320810.1| predicted protein [Populus trichocarpa] gi|222861583|gb|EEE99125.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (545), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 107/145 (73%), Positives = 120/145 (82%), Gaps = 2/145 (1%)

Query: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTF 60
           MGGCCCSSRKPHLHGTPVYYYCPPALEE  SLTSHNG AS FT GLLV+ HL  STPDTF
Sbjct: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEEHGSLTSHNGAASAFTAGLLVELHLNTSTPDTF 60

Query: 61  RAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRK 120
           R PP PLPYDV+ GCP S  SESV ET+S GSF TLA CE +++ DC+TQASSL+ SPRK
Sbjct: 61  RPPPAPLPYDVILGCPQSPFSESVQETISRGSFGTLATCEDLDELDCETQASSLLVSPRK 120

Query: 121 SEVSQLN--VFAASEEEDTCPICLE 143
           SEV++L+  V +A+EEED CPICLE
Sbjct: 121 SEVTKLHEPVASATEEEDACPICLE 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067912|ref|XP_002302595.1| predicted protein [Populus trichocarpa] gi|222844321|gb|EEE81868.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 100/144 (69%), Positives = 113/144 (78%), Gaps = 1/144 (0%)

Query: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTF 60
           MGGCCCSSRKPHL+GTPVYYYCPPALEE  SLTSHN  AS FT GLLV+ +L  STPDTF
Sbjct: 1   MGGCCCSSRKPHLNGTPVYYYCPPALEEHVSLTSHNVAASAFTAGLLVELNLNTSTPDTF 60

Query: 61  RAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRK 120
             PP+PLPYDVV GCP S DSESV E +S  SFETLA CE +E+ DCKT ASS + SPRK
Sbjct: 61  HPPPVPLPYDVVLGCPQSPDSESVREIISRSSFETLATCEDLEELDCKTHASSFLFSPRK 120

Query: 121 SEVSQLNV-FAASEEEDTCPICLE 143
           S+V + +   A++ EED CPICLE
Sbjct: 121 SDVKKFHEPVASATEEDACPICLE 144

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520392|ref|XP_003528846.1| PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Glycine max]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 95/145 (65%), Positives = 112/145 (77%), Gaps = 2/145 (1%)

Query: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTF 60
           MGGCCCS+RKPHLHGTPVYYYCPP LEE ESLTS++GTA++ T GLLV  +LE STPDT+
Sbjct: 1   MGGCCCSARKPHLHGTPVYYYCPPTLEEHESLTSNDGTATSLTTGLLVGLNLETSTPDTY 60

Query: 61  RAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRK 120
             PP PLPYD+V G P STDSES  ETVSG SFETL  C+  E++DCK +A+S   SP K
Sbjct: 61  HPPPAPLPYDMVLGGPASTDSESGRETVSGSSFETLITCKDPEESDCKIKANSAPISPSK 120

Query: 121 SEVSQLNVFAA--SEEEDTCPICLE 143
           + +S+   F A  +EEED CPICLE
Sbjct: 121 AGLSKSKEFHALVTEEEDGCPICLE 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560785|ref|XP_003548668.1| PREDICTED: uncharacterized protein LOC100804435 [Glycine max]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 93/145 (64%), Positives = 113/145 (77%), Gaps = 2/145 (1%)

Query: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTF 60
           MGGCCCS+RKPHLHGTPVYYYCPP LEERESLTS++G A + T GLLV  +LE STPDT+
Sbjct: 37  MGGCCCSARKPHLHGTPVYYYCPPTLEERESLTSNDGRAMSLTTGLLVGLNLETSTPDTY 96

Query: 61  RAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRK 120
           ++PP P PYD+V G P STDSES   TVSG SFETL  C+ +E++DCK +A+S   SP K
Sbjct: 97  QSPPAPPPYDMVLGGPASTDSESGRVTVSGSSFETLITCDDLEESDCKAKANSAPISPSK 156

Query: 121 SEVSQLNVFAA--SEEEDTCPICLE 143
           +E+S+   F A  +EEED CPICL+
Sbjct: 157 AELSKSKEFHALVTEEEDGCPICLD 181

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531973|ref|XP_003534550.1| PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Glycine max]

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/145 (62%), Positives = 109/145 (75%), Gaps = 4/145 (2%)

Query: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTF 60
           MGGCCCS+RKPHL G PVYYYCPP  EERESLTS+NGT ++   G L+  +LEAS PDTF
Sbjct: 1   MGGCCCSARKPHLQGAPVYYYCPPTFEERESLTSNNGTNASVNAGFLIGLNLEASMPDTF 60

Query: 61  RAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRK 120
           ++PP+PLPYD+V G   ST SES  ETVS  SFETL   E VE++DCK QA+S + SPRK
Sbjct: 61  QSPPVPLPYDMVLGGSASTYSESGRETVS--SFETLITREDVEESDCKAQANSALTSPRK 118

Query: 121 SEVSQLNV--FAASEEEDTCPICLE 143
           +++ + NV     +EEED CPICLE
Sbjct: 119 AQLPKSNVTQVLVTEEEDVCPICLE 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357504425|ref|XP_003622501.1| RING finger protein [Medicago truncatula] gi|357514547|ref|XP_003627562.1| RING finger protein [Medicago truncatula] gi|355497516|gb|AES78719.1| RING finger protein [Medicago truncatula] gi|355521584|gb|AET02038.1| RING finger protein [Medicago truncatula] gi|388504160|gb|AFK40146.1| unknown [Medicago truncatula]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 88/145 (60%), Positives = 104/145 (71%), Gaps = 2/145 (1%)

Query: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTF 60
           MGGCCCS+RK HLHGTPVYYYCPP LEE + L S++    + T GLLV  ++E STPDT+
Sbjct: 1   MGGCCCSARKTHLHGTPVYYYCPPILEEHDPLASNDAANDSLTAGLLVGLNVEESTPDTY 60

Query: 61  RAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRK 120
           + PP PLPYDVV G P STDSES  +TVSG SFETL  CE +E++D K QA S   SP K
Sbjct: 61  QPPPAPLPYDVVLGVPVSTDSESGKDTVSGSSFETLVTCEDIEESDLKAQAKSAPISPTK 120

Query: 121 SEVSQLNVFAA--SEEEDTCPICLE 143
           +E+ + N   A   EEED CPICLE
Sbjct: 121 AELWKSNELHALVIEEEDGCPICLE 145

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568411|ref|XP_003552404.1| PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Glycine max]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 89/145 (61%), Positives = 107/145 (73%), Gaps = 4/145 (2%)

Query: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTF 60
           MGGCCCS+RKPHL G PVYYYCPP  EERESLTS++G  ++   G LV  +LEAS PDTF
Sbjct: 1   MGGCCCSARKPHLQGAPVYYYCPPTFEERESLTSNDGLNASVNAGFLVGLNLEASMPDTF 60

Query: 61  RAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRK 120
           + PP+PLPYD+V G   STDSES  ETVS  SFET    E VE++DCK QA+S   SP+K
Sbjct: 61  QPPPVPLPYDMVLGGSASTDSESGRETVS--SFETSITLEDVEESDCKAQANSAPTSPKK 118

Query: 121 SEVSQLNVFA--ASEEEDTCPICLE 143
           +++S+ NV     +EEED CPICLE
Sbjct: 119 AQLSKSNVTQELVTEEEDVCPICLE 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454365|ref|XP_002278589.1| PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Vitis vinifera] gi|297745359|emb|CBI40439.3| unnamed protein product [Vitis vinifera]

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/145 (59%), Positives = 99/145 (68%), Gaps = 10/145 (6%)

Query: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTF 60
           MGGCCCSSRK  L GTPVYYYCPP L+E E LTSHNG AS F   LLVD +L+ S PDT+
Sbjct: 1   MGGCCCSSRKTQLRGTPVYYYCPPTLQEHEFLTSHNGAASAFAAELLVDLNLQTSIPDTY 60

Query: 61  RAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRK 120
           R PP P+PYDVV G P STD + VGET++G         + +  +DCKTQASSL  SPRK
Sbjct: 61  RPPPAPIPYDVVLGHPRSTDCDPVGETINGS--------KGLRVSDCKTQASSLPTSPRK 112

Query: 121 SE--VSQLNVFAASEEEDTCPICLE 143
            E  +S    F   EE+D CPICLE
Sbjct: 113 FELPISNEPNFLPLEEDDACPICLE 137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79324959|ref|NP_001031564.1| RING-H2 finger B1A [Arabidopsis thaliana] gi|332656461|gb|AEE81861.1| RING-H2 finger B1A [Arabidopsis thaliana]

 Score =  155 bits (391), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 86/146 (58%), Positives = 99/146 (67%), Gaps = 5/146 (3%)

Query: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTF 60
           MGGCC SSRK HL GTPVYYYCP + EE     +  G  S FT GLLVD  LE S PDTF
Sbjct: 1   MGGCCSSSRKSHLVGTPVYYYCPESFEELVPSGTRAGVGSAFTTGLLVDIGLETSIPDTF 60

Query: 61  RAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRK 120
            AP  PLPYD++ G P  TDSES+   +SG SFETLA CE + ++DCKT ASS+I SPRK
Sbjct: 61  CAPA-PLPYDLLLGRPQCTDSESIKGRMSGSSFETLATCEDLGESDCKTLASSVILSPRK 119

Query: 121 SEVSQ---LNVFAASEEEDTCPICLE 143
           S+ S+   L +    EEED CPIC E
Sbjct: 120 SDFSKHQGLKIL-VDEEEDCCPICFE 144

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
TAIR|locus:505006415	190	RHB1A "RING-H2 finger B1A" [Ar	0.952	0.742	0.547	4.5e-38
TAIR|locus:2177881	212	AT5G41350 [Arabidopsis thalian	0.513	0.358	0.512	5.2e-21

TAIR|locus:505006415 RHB1A "RING-H2 finger B1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
 Identities = 80/146 (54%), Positives = 91/146 (62%)

Query:     1 MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTF 60
             MGGCC SSRK HL GTPVYYYCP + EE     +  G  S FT GLLVD  LE S PDTF
Sbjct:     1 MGGCCSSSRKSHLVGTPVYYYCPESFEELVPSGTRAGVGSAFTTGLLVDIGLETSIPDTF 60

Query:    61 RAPPLPLPYDVVFGCPPSTDXXXXXXXXXXXXFETLAMCEVVEDADCKTQASSLIASPRK 120
              AP  PLPYD++ G P  TD            FETLA CE + ++DCKT ASS+I SPRK
Sbjct:    61 CAPA-PLPYDLLLGRPQCTDSESIKGRMSGSSFETLATCEDLGESDCKTLASSVILSPRK 119

Query:   121 SEVSQ---LNVFAASEEEDTCPICLE 143
             S+ S+   L +    EEED CPIC E
Sbjct:   120 SDFSKHQGLKILV-DEEEDCCPICFE 144

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2177881 AT5G41350 [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
 Identities = 41/80 (51%), Positives = 52/80 (65%)

Query:     1 MGGCCC--SSRKPHLHGTPVYYYCPPALEERESLTS-HNGTASTFTRGLLV-DFHLEAST 56
             MGGCCC  SSR+  +   P YYY P A EER  L+S HN T+S  + G++V D +LE S+
Sbjct:     1 MGGCCCCSSSRRADVDNGPAYYYYPRATEERVPLSSAHNRTSSAISTGVVVVDTNLETSS 60

Query:    57 PDTFRAPPLPLPYDVVFGCP 76
             PD +  PPLP P+DV  G P
Sbjct:    61 PDAYIPPPLPTPFDVPIGIP 80

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0006914 "autophagy" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	148
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	92.59
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	88.63
2ect_A	78	Ring finger protein 126; metal binding protein, st	87.12
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	86.22
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	84.57
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	83.97
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	83.6
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	82.44
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	82.31
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	81.16
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	80.26

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.59  E-value=0.052  Score=37.00  Aligned_cols=18  Identities=22%  Similarity=0.475  Sum_probs=14.4

Q ss_pred             CCCCcccCCCcccCccCC
Q 032022          130 AASEEEDTCPICLEVKSS  147 (148)
Q Consensus       130 ~~sEeEDVCPtCLEEYt~  147 (148)
                      ...++++.|+|||++|+.
T Consensus        10 ~~~~~~~~C~IC~~~~~~   27 (80)
T 2d8s_A           10 ITPSSQDICRICHCEGDD   27 (80)
T ss_dssp             CCCTTSCCCSSSCCCCCS
T ss_pred             CCCCCCCCCeEcCccccC
Confidence            445778899999999963

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.63  E-value=0.15  Score=32.85  Aligned_cols=17  Identities=24%  Similarity=0.470  Sum_probs=12.9

Q ss_pred             CCCcccCCCcccCccCC
Q 032022          131 ASEEEDTCPICLEVKSS  147 (148)
Q Consensus       131 ~sEeEDVCPtCLEEYt~  147 (148)
                      ..++++.|+|||++|..
T Consensus        19 ~~~~~~~C~IC~~~~~~   35 (75)
T 1x4j_A           19 HQSEQTLCVVCMCDFES   35 (75)
T ss_dssp             CSSSCCEETTTTEECCB
T ss_pred             ccCCCCCCeECCcccCC
Confidence            34667789999998853

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=87.12  E-value=0.26  Score=31.76  Aligned_cols=16  Identities=25%  Similarity=0.474  Sum_probs=12.8

Q ss_pred             CCcccCCCcccCccCC
Q 032022          132 SEEEDTCPICLEVKSS  147 (148)
Q Consensus       132 sEeEDVCPtCLEEYt~  147 (148)
                      .++++.|||||++|..
T Consensus        12 ~~~~~~C~IC~~~~~~   27 (78)
T 2ect_A           12 VGSGLECPVCKEDYAL   27 (78)
T ss_dssp             SSSSCCCTTTTSCCCT
T ss_pred             CCCCCCCeeCCccccC
Confidence            4667789999999863

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.22  E-value=0.28  Score=31.26  Aligned_cols=16  Identities=25%  Similarity=0.544  Sum_probs=12.5

Q ss_pred             CCcccCCCcccCccCC
Q 032022          132 SEEEDTCPICLEVKSS  147 (148)
Q Consensus       132 sEeEDVCPtCLEEYt~  147 (148)
                      .++++.|+|||++|..
T Consensus        12 ~~~~~~C~IC~~~~~~   27 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKP   27 (74)
T ss_dssp             CCCSCBCSSSCCBCCS
T ss_pred             CCCCCCCcCCCcccCC
Confidence            3566779999999863

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=84.57  E-value=0.23  Score=34.29  Aligned_cols=13  Identities=38%  Similarity=0.869  Sum_probs=10.3

Q ss_pred             cccCCCcccCccC
Q 032022          134 EEDTCPICLEVKS  146 (148)
Q Consensus       134 eEDVCPtCLEEYt  146 (148)
                      +++.||||||+|.
T Consensus        24 ~~~~C~ICl~~~~   36 (114)
T 1v87_A           24 PEEDCIICMEKLA   36 (114)
T ss_dssp             CSCEETTTTEETT
T ss_pred             CCCcCccCChhhc
Confidence            3456999999984

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=83.97  E-value=0.42  Score=30.03  Aligned_cols=15  Identities=33%  Similarity=0.926  Sum_probs=12.1

Q ss_pred             CCcccCCCcccCccC
Q 032022          132 SEEEDTCPICLEVKS  146 (148)
Q Consensus       132 sEeEDVCPtCLEEYt  146 (148)
                      .++++.|||||++|.
T Consensus        11 ~~~~~~C~IC~~~~~   25 (69)
T 2kiz_A           11 EDTEEKCTICLSILE   25 (69)
T ss_dssp             TTCCCSBTTTTBCCC
T ss_pred             CCCCCCCeeCCcccc
Confidence            356678999999985

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.60  E-value=0.43  Score=29.56  Aligned_cols=16  Identities=31%  Similarity=0.721  Sum_probs=12.6

Q ss_pred             CCCcccCCCcccCccC
Q 032022          131 ASEEEDTCPICLEVKS  146 (148)
Q Consensus       131 ~sEeEDVCPtCLEEYt  146 (148)
                      ..+++..|||||+.|.
T Consensus        11 ~~~~~~~C~IC~~~~~   26 (69)
T 2ea6_A           11 RPSGTVSCPICMDGYS   26 (69)
T ss_dssp             CTTCCCCCTTTCCCHH
T ss_pred             CCCCCCCCcccCcccc
Confidence            3466778999999875

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.44  E-value=0.46  Score=31.52  Aligned_cols=14  Identities=43%  Similarity=0.641  Sum_probs=10.3

Q ss_pred             cccCCCcccCccCC
Q 032022          134 EEDTCPICLEVKSS  147 (148)
Q Consensus       134 eEDVCPtCLEEYt~  147 (148)
                      ++|.|+|||++++.
T Consensus        14 ~~~~C~IC~~~~~~   27 (81)
T 2ecl_A           14 ECDTCAICRVQVMD   27 (81)
T ss_dssp             CCSCBTTTTBCTTS
T ss_pred             CCCCCcccChhhhc
Confidence            55668888888753

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=82.31  E-value=0.37  Score=32.50  Aligned_cols=17  Identities=35%  Similarity=0.604  Sum_probs=13.3

Q ss_pred             CCCcccCCCcccCccCC
Q 032022          131 ASEEEDTCPICLEVKSS  147 (148)
Q Consensus       131 ~sEeEDVCPtCLEEYt~  147 (148)
                      ..++++.|+|||++|..
T Consensus        36 ~~~~~~~C~IC~~~~~~   52 (91)
T 2l0b_A           36 AVGQEMCCPICCSEYVK   52 (91)
T ss_dssp             SSSSCSEETTTTEECCT
T ss_pred             ccCCCCCCcccChhhcC
Confidence            34677789999999864

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.16  E-value=0.97  Score=27.86  Aligned_cols=16  Identities=44%  Similarity=0.955  Sum_probs=12.8

Q ss_pred             CCcccCCCcccCccCC
Q 032022          132 SEEEDTCPICLEVKSS  147 (148)
Q Consensus       132 sEeEDVCPtCLEEYt~  147 (148)
                      .+++..|||||+.+..
T Consensus        17 ~~~~~~C~IC~~~~~~   32 (63)
T 2ysj_A           17 LQEEVICPICLDILQK   32 (63)
T ss_dssp             CCCCCBCTTTCSBCSS
T ss_pred             CccCCCCCcCCchhCC
Confidence            3677889999998863

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.26  E-value=0.73  Score=27.66  Aligned_cols=16  Identities=31%  Similarity=0.702  Sum_probs=12.6

Q ss_pred             CCcccCCCcccCccCC
Q 032022          132 SEEEDTCPICLEVKSS  147 (148)
Q Consensus       132 sEeEDVCPtCLEEYt~  147 (148)
                      .+++..||||++.|..
T Consensus        12 ~~~~~~C~IC~~~~~~   27 (58)
T 2ecj_A           12 LQVEASCSVCLEYLKE   27 (58)
T ss_dssp             SCCCCBCSSSCCBCSS
T ss_pred             cccCCCCccCCcccCc
Confidence            3567789999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00