Citrus Sinensis ID: 032090

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MAVRQRAVTTLPNLMRSLRKGSPKAAPNQPLPSLRYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVSS
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHcccccccccccccEEEEEcccEEEccEEEEccEEEEccEEEEEcccccccccccccHHHHHccccccEEEEEEccccccccHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHcccEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEccEEEEEEEEEEcccEEccccccHHHccHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHcccEEEEcccHHHHHHHHHHHHcccEEEEEEEcccccc
Coil and Loop (DISEMBL)
MAVRQRAVTTLPNLMrslrkgspkaapnqplpslrytdtgftvngvqYEGSLLCIGNLllswtpkkfseitpnCLSIFqlvrpipeililgcgryiepvnpELRQFIRSTGMkleaidsrnaastynILNEEGRIVAAALLPYGVSS
Flexible Loop (DISEMBL)
mavrqravttlpnlmrslrkgspkaapnqplpslRYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVSS
Low Complexity Region (SEG)
MAVRQRAVTTLPNLMRSLRKGSPKAAPNQPLPSLRYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVSS
Disordered region (IsUnstruct)
*********************************LRYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG***
Disordered Region (DISOPRED)
************NLM***************LPSLRYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGV**
Disordered Region (DISEMBL)
********TTLPNLMRSLR********NQPLPSLRYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVSS
Disordered Region (DISPRO)
MAVRQRAVTTLPNLMRSLRKGSPKAAPNQPLPSLRYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVS*
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVRQRAVTTLPNLMRSLRKGSPKAAPNQPLPSLRYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
Q6DFN1	183	NADH dehydrogenase [ubiqu	yes	no	0.727	0.584	0.364	6e-16
Q9JKL4	185	NADH dehydrogenase [ubiqu	yes	no	0.727	0.578	0.327	1e-13
O08776	185	NADH dehydrogenase [ubiqu	yes	no	0.727	0.578	0.336	2e-13
Q2HJI2	184	NADH dehydrogenase [ubiqu	yes	no	0.727	0.581	0.327	2e-13
Q9BU61	184	NADH dehydrogenase [ubiqu	yes	no	0.727	0.581	0.327	5e-13
A1L1F1	174	NADH dehydrogenase [ubiqu	yes	no	0.693	0.586	0.323	3e-09
P29962	124	Uncharacterized protein R	yes	no	0.748	0.887	0.295	0.0002

>sp|Q6DFN1|NDUF3_XENTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Xenopus tropicalis GN=ndufaf3 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 62/107 (57%)

Query: 36  YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
           Y+  GF +NG +  G    I   +L W    + +I    LS+F ++ P  EIL++G G  
Sbjct: 68  YSSQGFIINGDKVVGPCAVIPKAILQWNVGSYKDINLESLSLFHMLSPRIEILVVGTGDR 127

Query: 96  IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142
           +E ++P + +F+R  G+ +E  D+ NA +T+N L  E RI AAAL+P
Sbjct: 128 VERLDPNILKFMRQKGVAVEVQDTANACATFNFLVSERRITAAALIP 174

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).
Xenopus tropicalis (taxid: 8364)

>sp|Q9JKL4|NDUF3_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Mus musculus GN=Ndufaf3 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 61/107 (57%)

Query: 36  YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
           Y+  GFT+ G +  G  + +   ++ W      +IT    S+F ++ P  EI+++G G  
Sbjct: 64  YSSRGFTICGNRVFGPCVLLPQTVVQWNVGSHQDITEESFSLFWMLEPRIEIVVVGTGNK 123

Query: 96  IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142
            E ++P++ Q +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct: 124 TERLHPQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 170

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Mus musculus (taxid: 10090)

>sp|O08776|NDUF3_RAT NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Rattus norvegicus GN=Ndufaf3 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 59/107 (55%)

Query: 36  YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
           Y   GFT+NG +  G    +   ++ W      +IT    SIF ++ P  EI+++G G  
Sbjct: 64  YNSRGFTINGNRVFGPCALLPQTVVQWNVGSHQDITEESFSIFWMLEPRIEIVVVGTGNK 123

Query: 96  IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142
            E ++ ++ Q +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct: 124 TERLHSQVLQAMRQRGIAVEIQDTPNACATFNFLCHEGRVTGAALIP 170

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Rattus norvegicus (taxid: 10116)

>sp|Q2HJI2|NDUF3_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Bos taurus GN=NDUFAF3 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 59/107 (55%)

Query: 36  YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
           Y+  GF VNG +  G    +   ++ W    + +IT    S+F ++ P  EI+++G G  
Sbjct: 63  YSSRGFVVNGNRVFGPCALLPQSVVQWNVGSYQDITEESFSLFWMLEPRIEIVVVGTGDR 122

Query: 96  IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142
            E + P + + +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct: 123 TERLQPHVLRAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 169

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Bos taurus (taxid: 9913)

>sp|Q9BU61|NDUF3_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Homo sapiens GN=NDUFAF3 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 59/107 (55%)

Query: 36  YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
           Y   GF +NG +  G    + + ++ W      +IT +  S+F L+ P  EI+++G G  
Sbjct: 63  YNSRGFMINGNRVLGPCALLPHSVVQWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDR 122

Query: 96  IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142
            E +  ++ Q +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct: 123 TERLQSQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 169

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Homo sapiens (taxid: 9606)

>sp|A1L1F1|NDUF3_DANRE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Danio rerio GN=ndufaf3 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 56/102 (54%)

Query: 36  YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
           Y+  GF +NG    G    +   +L W     S+I+   LS+F L+ P  E+L+LG G  
Sbjct: 62  YSPRGFNINGNTVFGPCAVLPPAILQWNVGSHSDISVESLSLFYLLEPQIEVLVLGTGAR 121

Query: 96  IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVA 137
            E ++ E+ + ++  G+ +E  D+ NA +T+N L+ E R+ A
Sbjct: 122 TERLHAEVLEELKKRGIAVEVQDTPNACATFNFLSSEKRLAA 163

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Danio rerio (taxid: 7955)

>sp|P29962|Y1784_RHOCB Uncharacterized protein RCAP_rcc01784 OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=RCAP_rcc01784 PE=4 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 12/122 (9%)

Query: 26  APNQP-----LPSLRYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQL 80
           AP +P     LP   Y    F + G  + G LL      + WT   F +     L+  + 
Sbjct: 2   APREPGFAGALPIDGYGPGFFRIAGAVHRGGLLIHAEAAMPWT--GFDD-----LAALRA 54

Query: 81  VRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAAL 140
           +    ++L+ G G  I  +   L+  + + G+  E + + +AA  YN+L  EGR V AAL
Sbjct: 55  LAGQVDLLLCGMGADIAHLPKGLQVELEALGVMAEPMSTASAARHYNVLLSEGRRVGAAL 114

Query: 141 LP 142
           LP
Sbjct: 115 LP 116

Not required for the biogenesis of c-type cytochromes.

Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) (taxid: 272942)

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
TAIR|locus:3436179	170	AT2G44525 "AT2G44525" [Arabido	0.931	0.805	0.673	1.6e-45
TAIR|locus:2101437	170	AT3G60150 "AT3G60150" [Arabido	0.986	0.852	0.624	1.9e-44
MGI|MGI:1913956	185	Ndufaf3 "NADH dehydrogenase (u	0.727	0.578	0.327	4.9e-14
RGD|708545	185	Ndufaf3 "NADH dehydrogenase (u	0.727	0.578	0.336	6.2e-14
ZFIN|ZDB-GENE-070112-282	174	zgc:153176 "zgc:153176" [Danio	0.727	0.614	0.345	6.2e-14
UNIPROTKB|Q2HJI2	184	NDUFAF3 "NADH dehydrogenase [u	0.727	0.581	0.327	1e-13
UNIPROTKB|F1SKI6	185	NDUFAF3 "Uncharacterized prote	0.727	0.578	0.327	1.3e-13
UNIPROTKB|G4N5R1	250	MGG_05297 "Uncharacterized pro	0.476	0.28	0.458	2.4e-13
UNIPROTKB|Q9BU61	184	NDUFAF3 "NADH dehydrogenase [u	0.727	0.581	0.327	3.4e-13
WB|WBGene00011123	295	nuaf-3 [Caenorhabditis elegans	0.700	0.349	0.358	3.2e-11

TAIR|locus:3436179 AT2G44525 "AT2G44525" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 95/141 (67%), Positives = 112/141 (79%)

Query:    11 LPNLMRSLRKGSP-KAAPNQPLPSLRY---TDTGFTVNGVQYEGSLLCIGNLLLSWTPKK 66
             LP+L R+           N P   LR+    DT FTVNGV+YEGSLLC+GNLL+SW+P+K
Sbjct:    30 LPSLRRAFSLYDQINLIDNVPEDQLRFQEFNDTSFTVNGVKYEGSLLCVGNLLMSWSPRK 89

Query:    67 FSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTY 126
             FSEIT + LSIFQ VRPIPE+LI+GCGR I PV PE+RQF++S GMKLE +DSRNAASTY
Sbjct:    90 FSEITTDSLSIFQTVRPIPELLIVGCGRDIHPVTPEVRQFVKSLGMKLETVDSRNAASTY 149

Query:   127 NILNEEGRIVAAALLPYGVSS 147
             NILNEEGR+VAAALLPYGV+S
Sbjct:   150 NILNEEGRVVAAALLPYGVTS 170

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101437 AT3G60150 "AT3G60150" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 93/149 (62%), Positives = 115/149 (77%)

Query:     3 VRQRAVTTLPNLMRSLRKGSP-KAAPNQPLPSLRYTD---TGFTVNGVQYEGSLLCIGNL 58
             V ++    LP+L R+           N P   LR+ +   T FTVNGV+YEGSLLC+GNL
Sbjct:    22 VTKQPSLVLPSLRRAFSLYDQINLIDNVPEDQLRFQEFDETSFTVNGVKYEGSLLCVGNL 81

Query:    59 LLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAID 118
             L+SW+P+ FS+IT + LSIFQ VRPIPE+LI+GCGRY  P+NP++RQF++S GMKLE +D
Sbjct:    82 LMSWSPRYFSDITTDSLSIFQTVRPIPELLIVGCGRYNHPLNPQVRQFVKSIGMKLETVD 141

Query:   119 SRNAASTYNILNEEGRIVAAALLPYGVSS 147
             SRNAASTYNILNEEGRIVAAALLPYGV+S
Sbjct:   142 SRNAASTYNILNEEGRIVAAALLPYGVTS 170

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1913956 Ndufaf3 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3" [Mus musculus (taxid:10090)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 35/107 (32%), Positives = 61/107 (57%)

Query:    36 YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
             Y+  GFT+ G +  G  + +   ++ W      +IT    S+F ++ P  EI+++G G  
Sbjct:    64 YSSRGFTICGNRVFGPCVLLPQTVVQWNVGSHQDITEESFSLFWMLEPRIEIVVVGTGNK 123

Query:    96 IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142
              E ++P++ Q +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct:   124 TERLHPQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 170

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISO

RGD|708545 Ndufaf3 "NADH dehydrogenase (ubiquinone) complex I, assembly factor 3" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 36/107 (33%), Positives = 59/107 (55%)

Query:    36 YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
             Y   GFT+NG +  G    +   ++ W      +IT    SIF ++ P  EI+++G G  
Sbjct:    64 YNSRGFTINGNRVFGPCALLPQTVVQWNVGSHQDITEESFSIFWMLEPRIEIVVVGTGNK 123

Query:    96 IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142
              E ++ ++ Q +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct:   124 TERLHSQVLQAMRQRGIAVEIQDTPNACATFNFLCHEGRVTGAALIP 170

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA;ISO

ZFIN|ZDB-GENE-070112-282 zgc:153176 "zgc:153176" [Danio rerio (taxid:7955)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 37/107 (34%), Positives = 61/107 (57%)

Query:    36 YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
             Y+  GF +NG    G    +   +L W     S+I+   LS+F L+ P  E+L+LG G  
Sbjct:    62 YSPRGFNINGNTVFGPCAVLPPAILQWNVGSHSDISVESLSLFYLLEPQIEVLVLGTGAR 121

Query:    96 IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142
              E ++ E+ + ++  G+ +E  D+ NA +T+N L+ E R+ AAAL+P
Sbjct:   122 TERLHAEVLEELKKRGIAVEVQDTPNACATFNFLSSEKRLAAAALIP 168

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|Q2HJI2 NDUFAF3 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3" [Bos taurus (taxid:9913)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 35/107 (32%), Positives = 59/107 (55%)

Query:    36 YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
             Y+  GF VNG +  G    +   ++ W    + +IT    S+F ++ P  EI+++G G  
Sbjct:    63 YSSRGFVVNGNRVFGPCALLPQSVVQWNVGSYQDITEESFSLFWMLEPRIEIVVVGTGDR 122

Query:    96 IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142
              E + P + + +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct:   123 TERLQPHVLRAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 169

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

UNIPROTKB|F1SKI6 NDUFAF3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 35/107 (32%), Positives = 60/107 (56%)

Query:    36 YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
             Y+  GF VNG +  G    + + ++ W      +IT    S+F ++ P  EI+++G G  
Sbjct:    63 YSSRGFVVNGNRVLGPCALLPHSVVQWNVGSHQDITEGSFSLFWMLEPRIEIVVVGTGDR 122

Query:    96 IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142
              E + P++ + +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct:   123 TERLQPQVLRAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 169

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|G4N5R1 MGG_05297 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 154 (59.3 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
 Identities = 33/72 (45%), Positives = 50/72 (69%)

Query:    75 LSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNIL-NEEG 133
             L++  LV P P++L+LG G  + P+ P  R+FI   G+++E +D+RNAA+ +N+L  E G
Sbjct:   174 LALLGLVWPRPDLLLLGLGAEMRPLCPATRKFITGLGIRVEVLDTRNAAAQFNLLATERG 233

Query:   134 -RIVAAALLPYG 144
              R VAAAL+P G
Sbjct:   234 TRDVAAALIPAG 245

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q9BU61 NDUFAF3 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3" [Homo sapiens (taxid:9606)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 35/107 (32%), Positives = 59/107 (55%)

Query:    36 YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
             Y   GF +NG +  G    + + ++ W      +IT +  S+F L+ P  EI+++G G  
Sbjct:    63 YNSRGFMINGNRVLGPCALLPHSVVQWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDR 122

Query:    96 IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142
              E +  ++ Q +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct:   123 TERLQSQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 169

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

WB|WBGene00011123 nuaf-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 158 (60.7 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 38/106 (35%), Positives = 57/106 (53%)

Query:    40 GFTV-NGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCG--RYI 96
             GF + +G    G +       LSW      +ITP  L++F  + P  +IL+LG G  + I
Sbjct:   104 GFRLLDGTFLYGPIALFPKTALSWRVPTPEDITPRSLALFAALEPKIDILVLGVGDKKNI 163

Query:    97 EPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142
             + V   +  F+R   + LE +D+ +A +T+N LN EGR V AAL P
Sbjct:   164 DKVRASVAPFLREHKIGLEIMDTEDAIATFNFLNAEGRYVGAALYP 209

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00018975001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (172 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00021858001	SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (339 aa)			•				•		0.426

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	147
cd05125	114	cd05125, Mth938_2P1-like, Mth938_2P1-like domain	2e-42
pfam04430	109	pfam04430, DUF498, Protein of unknown function (DU	9e-34
cd00248	109	cd00248, Mth938-like, Mth938-like domain	4e-23
COG3737	127	COG3737, COG3737, Uncharacterized conserved protei	2e-20
cd05560	109	cd05560, Xcc1710_like, Xcc1710_like family, specif	4e-18

>gnl|CDD|240161 cd05125, Mth938_2P1-like, Mth938_2P1-like domain

 Score =  136 bits (344), Expect = 2e-42
 Identities = 48/109 (44%), Positives = 72/109 (66%)

Query: 36  YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
           Y++ GF +N  +  GS   +   + SW    F +IT   LS+F+L+ P PEIL++G GR 
Sbjct: 6   YSENGFRLNNNKVIGSGAILPKEVFSWNVSSFEDITEESLSLFELLEPRPEILVIGTGRK 65

Query: 96  IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG 144
             P++PELR++ +  G+ +E +D+RNA +T+N L EEGR VAAAL+P G
Sbjct: 66  SRPLSPELRKYFKKLGIAVEVVDTRNACATFNFLAEEGRRVAAALIPPG 114

This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available. Length = 114

>gnl|CDD|218085 pfam04430, DUF498, Protein of unknown function (DUF498/DUF598)

 Score =  113 bits (286), Expect = 9e-34
 Identities = 44/106 (41%), Positives = 67/106 (63%), Gaps = 1/106 (0%)

Query: 36  YTDTGFTVNGVQYEGSLLCIGN-LLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 94
           Y   GF +NGV+YEGSLL + + ++  W    F +++P  L++   + P PE+LI+G G 
Sbjct: 4   YGPGGFRINGVRYEGSLLVLPDGIVWDWDVGSFEDLSPEDLALLLALAPDPEVLIIGTGA 63

Query: 95  YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAAL 140
            +  + PELR+ +R  G+ +E +D+  A  TYN+L  EGR VAAAL
Sbjct: 64  RLRFLPPELREALRKLGIGVEVMDTGAACRTYNVLASEGRRVAAAL 109

This is a large family of uncharacterized proteins found in all domains of life. The structure shows a novel fold with three beta sheets. A dimeric form is found in the crystal structure. It was suggested that the cleft in between the two monomers might bing nucleic acid. Length = 109

>gnl|CDD|238152 cd00248, Mth938-like, Mth938-like domain

 Score = 86.9 bits (216), Expect = 4e-23
 Identities = 37/107 (34%), Positives = 57/107 (53%), Gaps = 3/107 (2%)

Query: 36  YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITP-NCLSIFQLVRPIPEILILGCGR 94
           Y   GF + G  Y G LL + + ++ W     S++ P   L +    RP  +IL++G G 
Sbjct: 5   YGPGGFRIAGQVYRGPLLVLPDGVVPWDGTSLSDLDPEALLPLLAEDRP--DILLIGTGA 62

Query: 95  YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL 141
            I  +   LR  +R+ G+ +E + +  A  TYN+L  EGR VAAAL+
Sbjct: 63  EIAFLPRALRAALRAAGIGVEVMSTGAACRTYNVLLSEGRRVAAALI 109

The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined. Length = 109

>gnl|CDD|226260 COG3737, COG3737, Uncharacterized conserved protein [Function unknown]

 Score = 80.5 bits (199), Expect = 2e-20
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 2/108 (1%)

Query: 36  YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITP-NCLSIFQLVRPIPEILILGCGR 94
           Y   GF    + + GSLL + + +  W     S++TP +   +     P  EIL++G G 
Sbjct: 21  YGAGGFRFADMSHRGSLLVLPDGVCDWEVATLSDLTPEDFERVLAEA-PDVEILLIGTGA 79

Query: 95  YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142
            +    P+LR  +++ G+ +E + +  A  TYN+L  EGR VAAAL+ 
Sbjct: 80  RLRFPPPKLRAALKAAGISVEPMSTGAAVRTYNVLLSEGRRVAAALIA 127

Length = 127

>gnl|CDD|240187 cd05560, Xcc1710_like, Xcc1710_like family, specific to proteobacteria

 Score = 74.2 bits (183), Expect = 4e-18
 Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 35  RYTDTGFTVNGVQYEGSLLCI-GNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCG 93
            Y D    +N  +YE SL+     L+  W   +F ++T        L+   PE+++LG G
Sbjct: 4   AYGDGYVEINDQRYEHSLIVTPDELITDWPVARFEDLTAAHFE--ALLALQPEVILLGTG 61

Query: 94  RYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL 141
                  P L   + + G+ +E +D++ A  TYNIL  EGR V AALL
Sbjct: 62  ERQRFPPPALLAPLLARGIGVEVMDTQAACRTYNILMGEGRRVVAALL 109

Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown. Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
cd05125	114	Mth938_2P1-like Mth938_2P1-like domain. This model	100.0
cd00248	109	Mth938-like Mth938-like domain. The members of thi	100.0
PF04430	110	DUF498: Protein of unknown function (DUF498/DUF598	100.0
cd05560	109	Xcc1710_like Xcc1710_like family, specific to prot	100.0
COG3737	127	Uncharacterized conserved protein [Function unknow	100.0
cd05126	117	Mth938 Mth938 domain. Mth938 is a hypothetical pro	100.0
KOG3363	196	consensus Uncharacterized conserved nuclear protei	100.0
COG1504	121	Uncharacterized conserved protein [Function unknow	99.75
PF05499	176	DMAP1: DNA methyltransferase 1-associated protein	83.41

>cd05125 Mth938_2P1-like Mth938_2P1-like domain

Probab=100.00  E-value=1.6e-41  Score=249.72  Aligned_cols=114  Identities=42%  Similarity=0.749  Sum_probs=110.1

Q ss_pred             CCeeeEeCCcEEEcCEEEeeeEEEeCCceecCCCCCCCCCChhhhhchhhhcCCCcEEEEeecCCCCCCCHHHHHHHHHc
Q 032090           31 LPSLRYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRST  110 (147)
Q Consensus        31 ~~~~~Y~~g~f~Ing~~y~gsviv~p~~v~~W~~~~~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~~~l~~~l~~~l~~~  110 (147)
                      +.++.|++++|+|||+.|.||++++|+.+++|++++++++++++|+.|..++++||+||||||+++++++|+++++|+++
T Consensus         1 ~~I~~y~~~~f~in~~~~~gs~iv~p~~~~~W~~~~~~~l~~~~l~~l~~~~~~peiliiGtG~~~~~~~~~~~~~l~~~   80 (114)
T cd05125           1 NYIDAYSENGFRLNNNKVIGSGAILPKEVFSWNVSSFEDITEESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKL   80 (114)
T ss_pred             CeEEeECCCeEEECCEEEEEeEEEccCceeccCCCChhhCCHHHHHHHHhccCCCCEEEEccCCCCCcCCHHHHHHHHHc
Confidence            35677999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEeChHHHHHHHHhhhhccceeEEEeecCC
Q 032090          111 GMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG  144 (147)
Q Consensus       111 GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLlp~~  144 (147)
                      ||++|+|+|++||||||+|++|||+|+|+|||++
T Consensus        81 gi~vevm~T~~AcrtyN~L~~EgR~VaaaLip~~  114 (114)
T cd05125          81 GIAVEVVDTRNACATFNFLAEEGRRVAAALIPPG  114 (114)
T ss_pred             CCEEEEECHHHHHHHHHHHHhCCCeEEEEEecCC
Confidence            9999999999999999999999999999999985

This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.

>cd00248 Mth938-like Mth938-like domain

Probab=100.00  E-value=4e-41  Score=245.15  Aligned_cols=109  Identities=34%  Similarity=0.593  Sum_probs=103.1

Q ss_pred             CeeeEeCCcEEEcCEEEeeeEEEeCCceecCCCCCCCCCChhhhhchhhhcCCCcEEEEeecCCCCCCCHHHHHHHHHcC
Q 032090           32 PSLRYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTG  111 (147)
Q Consensus        32 ~~~~Y~~g~f~Ing~~y~gsviv~p~~v~~W~~~~~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~~~l~~~l~~~l~~~G  111 (147)
                      ++..|++|+|+|||+.|.+|++++|+.+.+|++++++++++++|+.+...+ +||+||||||+++++++|+++++|+++|
T Consensus         1 ~i~~y~~g~~~i~g~~y~~~viv~p~~~~~w~~~~~~~l~~~~l~~~~~~~-~peiliiGTG~~~~~~~~~~~~~l~~~g   79 (109)
T cd00248           1 PIDGYGPGGFRIAGQVYRGPLLVLPDGVVPWDGTSLSDLDPEALLPLLAED-RPDILLIGTGAEIAFLPRALRAALRAAG   79 (109)
T ss_pred             CeeeecCCEEEECCEEEeeCEEEeCCceeecCCcCcccCCHHHHHHHHhhC-CCCEEEEcCCCCCCcCCHHHHHHHHHcC
Confidence            356799999999999999999999999999999999999999999765544 5999999999999999999999999999


Q ss_pred             CeEEEeChHHHHHHHHhhhhccceeEEEee
Q 032090          112 MKLEAIDSRNAASTYNILNEEGRIVAAALL  141 (147)
Q Consensus       112 I~vEvM~T~aAcrTyNiL~sEGR~VaAaLl  141 (147)
                      |++|+|+|++||||||+|++|||+|+||||
T Consensus        80 I~vE~m~T~aAcrTyNiL~~EgR~Vaaali  109 (109)
T cd00248          80 IGVEVMSTGAACRTYNVLLSEGRRVAAALI  109 (109)
T ss_pred             CeEEEeCcHHHHHHHHHHHhCCcceEEEeC
Confidence            999999999999999999999999999996

The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.

>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=100.00  E-value=1.6e-40  Score=241.56  Aligned_cols=109  Identities=39%  Similarity=0.670  Sum_probs=99.9

Q ss_pred             eeeEeCCcEEEcCEEEeeeEEEeCCce-ecCCCCCCCCCChhhhhchhhhcCCCcEEEEeecCCCCCCCHHHHHHHHHcC
Q 032090           33 SLRYTDTGFTVNGVQYEGSLLCIGNLL-LSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTG  111 (147)
Q Consensus        33 ~~~Y~~g~f~Ing~~y~gsviv~p~~v-~~W~~~~~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~~~l~~~l~~~l~~~G  111 (147)
                      +.+|++|+|+|||++|.+|++++|+++ ++|+.+++++++.++|+.+..+.|+||+||||||+++++++|+++++|+++|
T Consensus         1 I~~y~~g~~~i~g~~~~~~iii~p~~~~~~w~~~~~~~l~~~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~G   80 (110)
T PF04430_consen    1 ITGYGFGGFVINGKEYEGSIIIFPDGVIRDWKVKSPHDLTPEDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKG   80 (110)
T ss_dssp             EEEEETTEEEETTEEESSEEEEETTSEEEEEHHSSTTCEETHHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT
T ss_pred             CceEeCCEEEECCEEEccCEEEECCCcccCcCCCCcccCCHHHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcC
Confidence            356999999999999999999999998 8998899999999999998888889999999999999999999999999999


Q ss_pred             CeEEEeChHHHHHHHHhhhhccceeEEEee
Q 032090          112 MKLEAIDSRNAASTYNILNEEGRIVAAALL  141 (147)
Q Consensus       112 I~vEvM~T~aAcrTyNiL~sEGR~VaAaLl  141 (147)
                      |++|+|+|++||||||+|++|||+|+|||+
T Consensus        81 I~ve~m~T~~Ac~tyN~L~~EgR~V~aal~  110 (110)
T PF04430_consen   81 IGVEVMDTPAACRTYNILASEGRRVAAALI  110 (110)
T ss_dssp             -EEEEE-HHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CeEEEECHHHHHHHHHHHHhCCccEEEEeC
Confidence            999999999999999999999999999996

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.

>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria

Probab=100.00  E-value=7.7e-40  Score=238.62  Aligned_cols=107  Identities=33%  Similarity=0.534  Sum_probs=100.3

Q ss_pred             eeeEeCCcEEEcCEEEeeeEEEeCCceec-CCCCCCCCCChhhhhchhhhcCCCcEEEEeecCCCCCCCHHHHHHHHHcC
Q 032090           33 SLRYTDTGFTVNGVQYEGSLLCIGNLLLS-WTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTG  111 (147)
Q Consensus        33 ~~~Y~~g~f~Ing~~y~gsviv~p~~v~~-W~~~~~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~~~l~~~l~~~l~~~G  111 (147)
                      +..|++|+|+|||++|.||++++|+.+.. |.++++++++.+||+.+  +..+||+||||||+++.+++|+++++|+++|
T Consensus         2 I~~y~~g~~~i~g~~y~~sviv~p~~~~~~w~~~~~~~l~~e~l~~l--~~~~peiliiGTG~~~~~~~~~~~~~l~~~g   79 (109)
T cd05560           2 ITAYGDGYVEINDQRYEHSLIVTPDELITDWPVARFEDLTAAHFEAL--LALQPEVILLGTGERQRFPPPALLAPLLARG   79 (109)
T ss_pred             eEeecCCEEEECCEEEecCEEEECCceeeccccCCcccCCHHHHHHH--HhcCCCEEEEecCCCCCcCCHHHHHHHHHcC
Confidence            35599999999999999999999998665 99999999999999974  4456999999999999999999999999999


Q ss_pred             CeEEEeChHHHHHHHHhhhhccceeEEEee
Q 032090          112 MKLEAIDSRNAASTYNILNEEGRIVAAALL  141 (147)
Q Consensus       112 I~vEvM~T~aAcrTyNiL~sEGR~VaAaLl  141 (147)
                      |++|+|+|++||||||+|++|||+|+||||
T Consensus        80 i~vE~m~T~~AcrTyN~L~~EgR~V~Aali  109 (109)
T cd05560          80 IGVEVMDTQAACRTYNILMGEGRRVVAALL  109 (109)
T ss_pred             CeEEEECHHHHHHHHHHHHhCCCcEEEEeC
Confidence            999999999999999999999999999996

Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.

>COG3737 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=6.2e-39  Score=236.20  Aligned_cols=118  Identities=31%  Similarity=0.486  Sum_probs=111.7

Q ss_pred             CCCCCCCCeeeEeCCcEEEcCEEEeeeEEEeCCceecCCCCCCCCCChhhhhchhhhcCCCcEEEEeecCCCCCCCHHHH
Q 032090           25 AAPNQPLPSLRYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELR  104 (147)
Q Consensus        25 ~~~~~~~~~~~Y~~g~f~Ing~~y~gsviv~p~~v~~W~~~~~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~~~l~~~l~  104 (147)
                      +|+|++.|...|+.|+|+++++++.+|+++.|+++..|.+.+.+++++++|+.+....+++|+||||||..+.|+|+.++
T Consensus        10 ~~~Pg~~~~~ayG~Gg~R~a~~sh~~SlL~lpdgv~~W~v~~~~~Lt~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~   89 (127)
T COG3737          10 AHFPGRAPIDAYGAGGFRFADMSHRGSLLVLPDGVCDWEVATLSDLTPEDFERVLAEAPDVEILLIGTGARLRFPPPKLR   89 (127)
T ss_pred             CCCCCcchhhhhcCCceEeccccccccEEEecCccccccccChhhCCHHHHHHHHhcCCCceEEEEecCccccCCCHHHH
Confidence            46778889888999999999999999999999999999999999999999997666667789999999999999999999


Q ss_pred             HHHHHcCCeEEEeChHHHHHHHHhhhhccceeEEEeec
Q 032090          105 QFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP  142 (147)
Q Consensus       105 ~~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLlp  142 (147)
                      +.|+++||++|+|+|++||||||+|++|||+||||||+
T Consensus        90 aal~~~gIsve~Mst~AA~RTYNvL~sEgRrvAAALi~  127 (127)
T COG3737          90 AALKAAGISVEPMSTGAAVRTYNVLLSEGRRVAAALIA  127 (127)
T ss_pred             HHHHHcCCccccccchhhHHHHHHHHhccHHHHHHhcC
Confidence            99999999999999999999999999999999999985

>cd05126 Mth938 Mth938 domain

Probab=100.00  E-value=4.7e-37  Score=226.72  Aligned_cols=107  Identities=22%  Similarity=0.278  Sum_probs=99.2

Q ss_pred             eeeEeCCcEEEcCEEEeeeEEEeCCceecCCCC-------CCCCCChhhhhchhhhcCCCcEEEEeecCCCC-CCCHHHH
Q 032090           33 SLRYTDTGFTVNGVQYEGSLLCIGNLLLSWTPK-------KFSEITPNCLSIFQLVRPIPEILILGCGRYIE-PVNPELR  104 (147)
Q Consensus        33 ~~~Y~~g~f~Ing~~y~gsviv~p~~v~~W~~~-------~~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~~-~l~~~l~  104 (147)
                      +..|++|+|+|||++|.+|++|+|+++..|+++       ++++++++||+.  +++.+||+||||||.+++ +++|+++
T Consensus         2 i~~y~~G~i~i~g~~y~~~viv~p~~~~~w~~~~~s~~~~~~~~l~~~~l~~--ll~~~peivliGTG~~~~~~~~~~~~   79 (117)
T cd05126           2 IESTSFGSITVGGETYEHDIVVYPDGSRARRWKELSKKTGTSHGLQPEELEE--LLEEGVEVIVIGTGQSGALKVPPETV   79 (117)
T ss_pred             cceecCCEEEECCEEEcCCEEEeCCccccccccccccccCCcccCCHHHHHH--HHhcCCCEEEEcCCCCccccCCHHHH
Confidence            356999999999999999999999998888766       788999999995  567789999999999976 7899999


Q ss_pred             HHHHHcCCeEEEeChHHHHHHHHhhhhccceeEEEee
Q 032090          105 QFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL  141 (147)
Q Consensus       105 ~~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLl  141 (147)
                      ++|+++||++|+|+|++||||||+|++|||+|+|||-
T Consensus        80 ~~l~~~Gi~ve~m~T~aAcrTYN~L~~EgRrV~Aa~H  116 (117)
T cd05126          80 EKLEKRGVEVLVLPTEEAVKRYNELAGKGRRVLAVIH  116 (117)
T ss_pred             HHHHhcCCEEEEcChHHHHHHHHHHHhCCCeEEEEEe
Confidence            9999999999999999999999999999999999984

Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.

>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]

Probab=100.00  E-value=5.7e-35  Score=226.05  Aligned_cols=146  Identities=47%  Similarity=0.780  Sum_probs=129.2

Q ss_pred             hhhhhhhhhhHHHHHHhhCCCCCCCC-----------------------CCCCCeeeEe-CCcEEEcCEEEeeeEEEeCC
Q 032090            2 AVRQRAVTTLPNLMRSLRKGSPKAAP-----------------------NQPLPSLRYT-DTGFTVNGVQYEGSLLCIGN   57 (147)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~Y~-~g~f~Ing~~y~gsviv~p~   57 (147)
                      +.|--...|.+-|++|.++++|+++-                       .+++....|+ .|++.+||+.|.|++.|+|+
T Consensus         5 slr~~g~qt~~~ll~s~~a~r~lh~~~vnps~~~d~s~~~qI~l~~te~~~ql~v~gys~ygfrl~ng~~l~Gpi~~fp~   84 (196)
T KOG3363|consen    5 SLRALGMQTLPKLLQSMRAERPLHGYPVNPSLRRDFSLYDQINLIDTEPEDQLRVQGYSCYGFRLVNGVKLEGPILCFPN   84 (196)
T ss_pred             HHHHHhHhhHHHHHHHHhhccccccccCChhhhhcccccceeeeecCCchhhheeeeecccceEeecCeEEEecceeccc
Confidence            45566678999999999999996542                       2344445566 45555789999999999999


Q ss_pred             ceecCCCCCCCCCChhhhhchhhhcCCCcEEEEeecCCCCC--CCHHHHHHHHHcCCeEEEeChHHHHHHHHhhhhccce
Q 032090           58 LLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEP--VNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRI  135 (147)
Q Consensus        58 ~v~~W~~~~~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~~~--l~~~l~~~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~  135 (147)
                      .+++|.+..++||+.++|+.|..++|+||+||+|+|.....  +.++++++++++||++|+|||++||.|||+|++|||.
T Consensus        85 ~~lSW~v~~fedIt~dSLslF~tlePkidlLIvG~Gd~~~p~~v~~~V~~F~k~~ki~lEi~dte~A~aTfNfLNaEgR~  164 (196)
T KOG3363|consen   85 LLLSWSVRTFEDITTDSLSLFQTLEPKIDLLIVGCGDKKHPDKVRPSVRQFVKSHKIKLEIVDTENAAATFNFLNAEGRY  164 (196)
T ss_pred             ceeeccCCChhhcCcchHhHhhhcCCCccEEEEecCCcCCchhcCHHHHHHHHHhCcceEEecchhhhhHhhhccccccE
Confidence            99999999999999999999999999999999999999665  9999999999999999999999999999999999999


Q ss_pred             eEEEeecCCcCC
Q 032090          136 VAAALLPYGVSS  147 (147)
Q Consensus       136 VaAaLlp~~~~~  147 (147)
                      |+|||+|+++-|
T Consensus       165 VaaAL~Pp~v~s  176 (196)
T KOG3363|consen  165 VAAALLPPGVTS  176 (196)
T ss_pred             EEEEecCCcccc
Confidence            999999998643

>COG1504 Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=4.7e-18  Score=124.30  Aligned_cols=104  Identities=21%  Similarity=0.315  Sum_probs=92.5

Q ss_pred             eEeCCcEEEcCEEEeeeEEEeCCc-e-----ecCCCC--CCCCCChhhhhchhhhcCCCcEEEEeecCC-CCCCCHHHHH
Q 032090           35 RYTDTGFTVNGVQYEGSLLCIGNL-L-----LSWTPK--KFSEITPNCLSIFQLVRPIPEILILGCGRY-IEPVNPELRQ  105 (147)
Q Consensus        35 ~Y~~g~f~Ing~~y~gsviv~p~~-v-----~~W~~~--~~~~l~~e~l~~l~~l~~~pEvlIIGTG~~-~~~l~~~l~~  105 (147)
                      .|++|.++|.|+.|+++++|.|++ +     ..|+.+  ++|.+.+|+++.  +++.+||+||+|||+. ...++++.++
T Consensus         6 ~~~FG~v~i~Gk~f~~DIvi~~dG~v~rr~K~lskrK~GTSHkl~~eEle~--~lee~~E~ivvGTG~~G~l~l~~ea~e   83 (121)
T COG1504           6 STSFGSVTIGGKDFEHDIVIRPDGKVERREKELSKRKYGTSHKLALEELEE--LLEEGPEVIVVGTGQSGMLELSEEARE   83 (121)
T ss_pred             ccceeeEEECCEeccccEEEecCCceehhhhhhhhhhcCcccccCHHHHHH--HHhcCCcEEEEecCceeEEEeCHHHHH
Confidence            388899999999999999999876 3     245554  469999999994  6778899999999999 6799999999


Q ss_pred             HHHHcCCeEEEeChHHHHHHHHhhhhccceeEEEee
Q 032090          106 FIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL  141 (147)
Q Consensus       106 ~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLl  141 (147)
                      +|+++|++|.+.+|+.|...||.|.+. |+|+|++-
T Consensus        84 ~~r~k~~~vi~~pT~EAikr~nel~~~-krV~aiiH  118 (121)
T COG1504          84 FFRKKGCEVIELPTPEAIKRYNELRGK-KRVAAIIH  118 (121)
T ss_pred             HHHhcCCeEEEeCCHHHHHHHHHHhcc-ceEEEEEE
Confidence            999999999999999999999999998 99998764

>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs)

Probab=83.41  E-value=0.91  Score=35.99  Aligned_cols=31  Identities=19%  Similarity=0.515  Sum_probs=27.4

Q ss_pred             HHHHHHHHcCCeEEEeChHHHHHHHHhhhhc
Q 032090          102 ELRQFIRSTGMKLEAIDSRNAASTYNILNEE  132 (147)
Q Consensus       102 ~l~~~l~~~GI~vEvM~T~aAcrTyNiL~sE  132 (147)
                      .+-..|.+.||.+.-|+|..-|..||.|.++
T Consensus       109 ~iEq~L~elgv~~~PmPTe~Ic~~fneLRsd  139 (176)
T PF05499_consen  109 AIEQFLQELGVDLNPMPTEEICQEFNELRSD  139 (176)
T ss_pred             HHHHHHHHcCCCCCCCChHHHHHHHHHHHHH
Confidence            3555899999999999999999999999775

The chief enzyme that maintains mammalian DNA methylation, DNMT1, can also establish a repressive transcription complex. The non-catalytic N terminus of DNMT1 binds to HDAC2 and DMAP1 (for DNMT1 associated protein), and can mediate transcriptional repression. DMAP1 has intrinsic transcription repressive activity, and binds to the transcriptional co-repressor TSG101. DMAP1 is targeted to replication foci through interaction with the far N terminus of DNMT1 throughout S phase, whereas HDAC2 joins DNMT1 and DMAP1 only during late S phase, providing a platform for how histones may become deacetylated in heterochromatin following replication [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	147
2k2e_A	158	Solution Nmr Structure Of Bordetella Pertussis Prot		2e-08
3cpk_A	150	Crystal Structure Of The Q7w7n7_borpa Protein From		2e-08
2fvt_A	135	Nmr Structure Of The Rpa2829 Protein From Rhodopseu		7e-07

>pdb|2K2E|A Chain A, Solution Nmr Structure Of Bordetella Pertussis Protein Bp2786, A Mth938-Like Domain. Northeast Structural Genomics Consortium Target Ber31 Length = 158

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 85  PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG 144
           PE+L++G GR    + PE  + + + G+ +EA+D++ AA TYNIL  EGR V  ALLP G
Sbjct: 89  PEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDTQAAARTYNILMAEGRRVVVALLPDG 148
Query: 145 VS 146
            S
Sbjct: 149 DS 150

>pdb|3CPK|A Chain A, Crystal Structure Of The Q7w7n7_borpa Protein From Bordetella Parapertussis. Northeast Structural Genomics Consortium Target Ber31 Length = 150

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 85  PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG 144
           PE+L++G GR    + PE  + + + G+ +EA D++ AA TYNIL  EGR V  ALLP G
Sbjct: 89  PEVLLVGTGRRQHLLGPEQVRPLLAXGVGVEAXDTQAAARTYNILXAEGRRVVVALLPDG 148
Query: 145 VS 146
            S
Sbjct: 149 DS 150

>pdb|2FVT|A Chain A, Nmr Structure Of The Rpa2829 Protein From Rhodopseudomonas Palustris: Northeast Structural Genomics Target Rpr43 Length = 135

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 36  YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLS-IFQLVRPIPEILILGCGR 94
           Y   GF   G+ ++GSLL + + +  W   K  +I    L  +F     I + LI+G G 
Sbjct: 19  YGKGGFYFAGMSHQGSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDNANAI-DTLIVGTGA 77
Query: 95  YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL 141
            +     +LR+ +R   + L+ + +  A  TYNI+  E R VAAAL+
Sbjct: 78  DVWIAPRQLREALRGVNVVLDTMQTGPAIRTYNIMIGERRRVAAALI 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	147
2gm2_A	132	Conserved hypothetical protein; MTH938-like fold,	5e-35
2fvt_A	135	Conserved hypothetical protein; MTH938-like fold,	1e-34
2fi9_A	128	Outer membrane protein; bartonella hense protein s	6e-34
3cpk_A	150	Uncharacterized protein Q7W7N7_borpa; BPP2477, BER	4e-30
2ab1_A	122	Hypothetical protein; HS.95870, DUF498, structural	3e-23
1ihn_A	113	Hypothetical protein MTH938; methanobacterium ther	8e-09

>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV} Length = 132

 Score =  117 bits (294), Expect = 5e-35
 Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 3/113 (2%)

Query: 36  YTDTGFTVNGVQYEGSLLCIGN-LLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 94
                  VN    + S + + + L+  W      ++ P    +  ++   P +++LG G 
Sbjct: 17  ADGRHAKVNEQILQQSFILMPDELVEHWPVPSLGQLQPA--HMDAVLALNPAVILLGTGE 74

Query: 95  YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVSS 147
             +  + ++     + G+ LEA+ +  AA TYN+L  EGR VA A++  G+  
Sbjct: 75  RQQFPSTDVLAACLTRGIGLEAMTNAAAARTYNVLASEGRRVALAMIVGGLEH 127

>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1 Length = 135

 Score =  116 bits (293), Expect = 1e-34
 Identities = 32/107 (29%), Positives = 51/107 (47%)

Query: 36  YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
           Y   GF   G+ ++GSLL + + +  W   K  +I    L          + LI+G G  
Sbjct: 19  YGKGGFYFAGMSHQGSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDNANAIDTLIVGTGAD 78

Query: 96  IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142
           +     +LR+ +R   + L+ + +  A  TYNI+  E R VAAAL+ 
Sbjct: 79  VWIAPRQLREALRGVNVVLDTMQTGPAIRTYNIMIGERRRVAAALIA 125

>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1 Length = 128

 Score =  114 bits (287), Expect = 6e-34
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 1/107 (0%)

Query: 36  YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
           Y + GF    + + GS++CI + +           T   +S         E+L++G G  
Sbjct: 21  YGNGGFRFADMSHRGSIICIPSGIYGIDMTG-PVPTQEDISRVLEESDQIEVLLIGTGVE 79

Query: 96  IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142
           +  +  ELR  +    +  + + +  A  T+N+L  E R VAA L  
Sbjct: 80  LLRLPEELRVLLWEKRISSDTMSTGAAVRTFNVLLAEDRAVAALLFA 126

>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A Length = 150

 Score =  105 bits (263), Expect = 4e-30
 Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 23/134 (17%)

Query: 36  YTDTGFTVNGVQYEGSLLCI-GNLLLSWTPKKFSEITPNCLSIFQLVRPI---------- 84
           Y D    VN V++  ++       + SW  ++ ++IT + L     +  +          
Sbjct: 17  YGDGYIEVNQVRFSHAIAFAPEGPVASWPVQRPADITASLLQQAAGLAEVVRDPLAFLDE 76

Query: 85  ------------PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEE 132
                       PE+L++G GR    + PE  + + + G+ +EA+D++ AA TYNIL  E
Sbjct: 77  PEAGAGARPANAPEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDTQAAARTYNILMAE 136

Query: 133 GRIVAAALLPYGVS 146
           GR V  ALLP G S
Sbjct: 137 GRRVVVALLPDGDS 150

>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A Length = 122

 Score = 86.9 bits (215), Expect = 3e-23
 Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 9/112 (8%)

Query: 36  YTDTGFTVNGVQYEGS-LLCIGNLLLSWTPKK-----FSEITPNCLSIFQLVRPIPEILI 89
            +     V G                +W  ++        + P    + ++V    + L+
Sbjct: 9   LSWGQMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPA--DVKEVVEKGVQTLV 66

Query: 90  LGCGRY-IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAAL 140
           +G G      V     ++++  G+ +  + +  A   YN L  +G  V    
Sbjct: 67  IGRGMSEALKVPSSTVEYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVF 118

>1ihn_A Hypothetical protein MTH938; methanobacterium thermoautotrophicum, unknown function; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.103.1.1 Length = 113

 Score = 49.6 bits (118), Expect = 8e-09
 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 21/115 (18%)

Query: 37  TDTGF---TVNGVQYEGSLLCIGNLLLSWTPKKFSE--------ITPNCLSIFQLVRPIP 85
           +D  F   T  G +Y   ++   +  ++   K+ S         +    L   +L+   P
Sbjct: 5   SDCRFGSVTYRGREYRSDIVVHVDGSVTPRRKEISRRKYGTSHVMAEEELE--ELLEEKP 62

Query: 86  EILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAAL 140
           E +I+G G +                     + +  A   YN     GR VAA +
Sbjct: 63  ESIIIGSGVH--------GALETGFRSDATVLPTCEAIKRYNEERSAGRRVAAII 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
2fvt_A	135	Conserved hypothetical protein; MTH938-like fold,	100.0
2fi9_A	128	Outer membrane protein; bartonella hense protein s	100.0
2gm2_A	132	Conserved hypothetical protein; MTH938-like fold,	100.0
3cpk_A	150	Uncharacterized protein Q7W7N7_borpa; BPP2477, BER	100.0
2ab1_A	122	Hypothetical protein; HS.95870, DUF498, structural	100.0
2cyj_A	118	Hypothetical protein PH1505; conserved hypothetica	100.0
1ihn_A	113	Hypothetical protein MTH938; methanobacterium ther	99.97

>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1

Probab=100.00  E-value=6.1e-43  Score=262.64  Aligned_cols=119  Identities=27%  Similarity=0.339  Sum_probs=114.4

Q ss_pred             CCCCCCCeeeEeCCcEEEcCEEEeeeEEEeCCceecCCCCCCCCCChhhhhchhhhcCCCcEEEEeecCCCCCCCHHHHH
Q 032090           26 APNQPLPSLRYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQ  105 (147)
Q Consensus        26 ~~~~~~~~~~Y~~g~f~Ing~~y~gsviv~p~~v~~W~~~~~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~~~l~~~l~~  105 (147)
                      +++..+++..|++|+|+|||+.|.||++|+|++++.|+++++++|++++|+.|..+.|+||+||||||+++.+++|++++
T Consensus         9 ~~~~~~~I~~y~~g~f~ing~~~~gsilv~p~~~~~W~~~~~~~l~~e~l~~l~~~~p~pevliiGTG~~~~~l~p~l~~   88 (135)
T 2fvt_A            9 HFPRTAAIDAYGKGGFYFAGMSHQGSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDNANAIDTLIVGTGADVWIAPRQLRE   88 (135)
T ss_dssp             CCCSCCCCCCEETTEEECSSSEECSEEEECSSCEEEESCCSTTCCCTTTTHHHHHTTTSCSEEEEECTTSCCCCCHHHHH
T ss_pred             cCCCCceEEEEcCCEEEECCEEEEeCEEEeCCCccccCCCCcccCCHHHHHHHHhcCCCCCEEEEcCCCCCCcCCHHHHH
Confidence            56677889999999999999999999999999999999999999999999998888899999999999999999999999


Q ss_pred             HHHHcCCeEEEeChHHHHHHHHhhhhccceeEEEeecCC
Q 032090          106 FIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG  144 (147)
Q Consensus       106 ~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLlp~~  144 (147)
                      +|+++||++|+|||++||||||+|++|||+|+|||||+.
T Consensus        89 ~l~~~GI~vE~M~T~aAcrTyNiL~~EgR~VaAaLi~~~  127 (135)
T 2fvt_A           89 ALRGVNVVLDTMQTGPAIRTYNIMIGERRRVAAALIAVP  127 (135)
T ss_dssp             HHHTTTCEEEEECHHHHHHHHHHHHHHTSCEEEEEECCC
T ss_pred             HHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEcCCC
Confidence            999999999999999999999999999999999999975

>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1

Probab=100.00  E-value=2.3e-42  Score=257.04  Aligned_cols=117  Identities=23%  Similarity=0.301  Sum_probs=111.6

Q ss_pred             CCCCCCCeeeEeCCcEEEcCEEEeeeEEEeCCceecCCCCCCCCCChhhhhchhhhcCCCcEEEEeecCCCCCCCHHHHH
Q 032090           26 APNQPLPSLRYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQ  105 (147)
Q Consensus        26 ~~~~~~~~~~Y~~g~f~Ing~~y~gsviv~p~~v~~W~~~~~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~~~l~~~l~~  105 (147)
                      +++..+++..|++|+|+|||+.|.||++|+|+++.+|++++ ++|++++|+.+..+.|+||+||||||.++++++|++++
T Consensus        11 ~~~~~~~I~~y~~g~f~i~g~~~~g~i~v~p~~~~~W~~~~-~~l~~~~l~~l~~~~p~pevliiGtG~~~~~l~p~~~~   89 (128)
T 2fi9_A           11 HFPGRAPIDAYGNGGFRFADMSHRGSIICIPSGIYGIDMTG-PVPTQEDISRVLEESDQIEVLLIGTGVELLRLPEELRV   89 (128)
T ss_dssp             CBSSCCCEEEEETTEEEETTEEEESEEEEETTEEEEECCSS-SSCCTGGGHHHHHTGGGCSEEEEECTTSCCCCCHHHHH
T ss_pred             CCCCCceEEEEcCCEEEECCEEEEeCEEEeCCCeeccCCCc-CCCCHHHHHHHHhcCCCCCEEEECCCCCCCCCCHHHHH
Confidence            34567888899999999999999999999999999999999 99999999988888889999999999999999999999


Q ss_pred             HHHHcCCeEEEeChHHHHHHHHhhhhccceeEEEeecC
Q 032090          106 FIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPY  143 (147)
Q Consensus       106 ~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLlp~  143 (147)
                      +|+++||++|+|+|++||||||+|++|||+|+|||||+
T Consensus        90 ~l~~~GI~vE~m~T~aAcrtyNiL~~EgR~VaaaLi~~  127 (128)
T 2fi9_A           90 LLWEKRISSDTMSTGAAVRTFNVLLAEDRAVAALLFAV  127 (128)
T ss_dssp             HHHHTTCEEEEECHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             HHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEEec
Confidence            99999999999999999999999999999999999996

>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}

Probab=100.00  E-value=1.2e-41  Score=254.55  Aligned_cols=117  Identities=24%  Similarity=0.365  Sum_probs=109.7

Q ss_pred             CCCCCCCeeeEeCCcEEEcCEEEeeeEEEeCCce-ecCCCCCCCCCChhhhhchhhhcCCCcEEEEeecCCCCCCCHHHH
Q 032090           26 APNQPLPSLRYTDTGFTVNGVQYEGSLLCIGNLL-LSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELR  104 (147)
Q Consensus        26 ~~~~~~~~~~Y~~g~f~Ing~~y~gsviv~p~~v-~~W~~~~~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~~~l~~~l~  104 (147)
                      .++..+++..|++|+|+|||+.|.||++|+|+++ +.|+++++++|++++|+.+  ++++||+||||||+++.+++|+++
T Consensus         7 ~~~~~~~I~~y~~g~f~i~g~~~~g~ilv~p~~~v~~W~~~~~~~l~~e~l~~l--l~~~pevliiGTG~~~~~l~p~~~   84 (132)
T 2gm2_A            7 HPDYTYALRAADGRHAKVNEQILQQSFILMPDELVEHWPVPSLGQLQPAHMDAV--LALNPAVILLGTGERQQFPSTDVL   84 (132)
T ss_dssp             SCCCCCCEEEECSSCEEETTEEECSEEEECSSCEECCCCCSSGGGCCTTTSHHH--HHHCCSEEEEECTTSCCCCCHHHH
T ss_pred             CCCCCceEEEEcCCEEEECCEEEEeCEEEeCCCceeecCCCCcccCCHHHHHHH--HhcCCCEEEECCCCCCCcCCHHHH
Confidence            3456788999999999999999999999999997 9999999999999999964  455699999999999999999999


Q ss_pred             HHHHHcCCeEEEeChHHHHHHHHhhhhccceeEEEeecCC
Q 032090          105 QFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG  144 (147)
Q Consensus       105 ~~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLlp~~  144 (147)
                      ++|+++||++|+|||++||||||+|++|||+|+|||+|++
T Consensus        85 ~~l~~~GI~vE~m~T~aAcrTyNiL~~EgR~VaAaLi~~~  124 (132)
T 2gm2_A           85 AACLTRGIGLEAMTNAAAARTYNVLASEGRRVALAMIVGG  124 (132)
T ss_dssp             HHHHHHTCEEEEECHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred             HHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEccCC
Confidence            9999999999999999999999999999999999999985

>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A

Probab=100.00  E-value=2.4e-40  Score=252.41  Aligned_cols=121  Identities=32%  Similarity=0.435  Sum_probs=109.8

Q ss_pred             CCCCCCCeeeEeCCcEEEcCEEEeeeEEEeCCce-ecCCCCCCCCCChhhhhchhhhcC---------------------
Q 032090           26 APNQPLPSLRYTDTGFTVNGVQYEGSLLCIGNLL-LSWTPKKFSEITPNCLSIFQLVRP---------------------   83 (147)
Q Consensus        26 ~~~~~~~~~~Y~~g~f~Ing~~y~gsviv~p~~v-~~W~~~~~~~l~~e~l~~l~~l~~---------------------   83 (147)
                      +.+..++++.|++|+|+|||++|.||++++|++. ..|+++++++|+.++|+.+..+.+                     
T Consensus         7 ~~~~~~~I~~Y~~g~~~ing~~~~gsv~v~p~g~v~~W~~~~~~~i~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~p~   86 (150)
T 3cpk_A            7 PATALNTVTAYGDGYIEVNQVRFSHAIAFAPEGPVASWPVQRPADITASLLQQAAGLAEVVRDPLAFLDEPEAGAGARPA   86 (150)
T ss_dssp             CCCCCCCEEEEETTEEEETTEEECSCEEECSSSCCEECCCSSGGGCCHHHHHHHHTCC----------------------
T ss_pred             CCCCCceEEEEcCCEEEECCEEEEcCEEEecCCceeecCCCChhhCCHHHHHHHHhcccccccchhhccccccccccccC
Confidence            3446778889999999999999999999999875 999999999999999998766644                     


Q ss_pred             -CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHhhhhccceeEEEeecCCcC
Q 032090           84 -IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVS  146 (147)
Q Consensus        84 -~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLlp~~~~  146 (147)
                       +||+||||||.++.+++++++++|+++||+||+|+|++||||||+|++|||+|+|||||++-|
T Consensus        87 ~~pEvliiGTG~~~~~l~p~~~~~L~~~GIgvE~M~T~aA~rTyNiL~~EgRrVaaaLi~~~~~  150 (150)
T 3cpk_A           87 NAPEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDTQAAARTYNILMAEGRRVVVALLPDGDS  150 (150)
T ss_dssp             -CCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred             CCCCEEEEcCCCCCCCCCHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence             899999999999999999999999999999999999999999999999999999999998643

>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A

Probab=100.00  E-value=5.6e-39  Score=237.29  Aligned_cols=111  Identities=14%  Similarity=0.203  Sum_probs=105.5

Q ss_pred             CCCeeeEeCCcEEEcCEEEee-eEEEeCCceecCC-----CCCCCCCChhhhhchhhhcCCCcEEEEeecCCCCC-CCHH
Q 032090           30 PLPSLRYTDTGFTVNGVQYEG-SLLCIGNLLLSWT-----PKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEP-VNPE  102 (147)
Q Consensus        30 ~~~~~~Y~~g~f~Ing~~y~g-sviv~p~~v~~W~-----~~~~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~~~-l~~~  102 (147)
                      .|.+..|++|+|+|||++|.+ |++|+|+++.+|+     .++++++++++|+.  +++++||+||||||.+..+ ++|+
T Consensus         3 ~~~I~~y~~g~~~ing~~~~~~siiv~p~~~~~w~w~~~g~~~~~~l~~~~l~~--ll~~~~evliiGtG~~~~~~~~~~   80 (122)
T 2ab1_A            3 SPEIASLSWGQMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPADVKE--VVEKGVQTLVIGRGMSEALKVPSS   80 (122)
T ss_dssp             CCCEEEEETTEEEETTCSCEESEEEEETTEEEEECHHHHTCCSSSCCCHHHHHH--HHTTCCSEEEEEECSSCCSCCCHH
T ss_pred             CCEEEEEcCCEEEECCEEEeCCCEEEECCccccCcccccCcCChhHCCHHHHHH--HhhCCCCEEEECCCCCCccCCCHH
Confidence            467888999999999999999 9999999999998     88999999999995  5788999999999999997 9999


Q ss_pred             HHHHHHHcCCeEEEeChHHHHHHHHhhhhccceeEEEeec
Q 032090          103 LRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP  142 (147)
Q Consensus       103 l~~~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLlp  142 (147)
                      ++++|+++||++|+|+|++||||||+|++|||+|+|||+.
T Consensus        81 ~~~~l~~~gI~ve~m~T~~A~rtyN~L~~EgR~VaAal~~  120 (122)
T 2ab1_A           81 TVEYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVFHS  120 (122)
T ss_dssp             HHHHHHHTTCEEEEECHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             HHHHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEee
Confidence            9999999999999999999999999999999999999985

>2cyj_A Hypothetical protein PH1505; conserved hypothetical protein, structural genomics, NPPSFA; HET: OCS; 1.50A {Pyrococcus horikoshii} SCOP: c.103.1.1

Probab=100.00  E-value=7.4e-36  Score=219.53  Aligned_cols=107  Identities=12%  Similarity=0.130  Sum_probs=96.8

Q ss_pred             CCeeeEeCCcEEEcCEEEeeeEEEeCCce---ecCCCCC-----CCCCChhhhhchhhhcCCCcEEEEeecCCC-CCCCH
Q 032090           31 LPSLRYTDTGFTVNGVQYEGSLLCIGNLL---LSWTPKK-----FSEITPNCLSIFQLVRPIPEILILGCGRYI-EPVNP  101 (147)
Q Consensus        31 ~~~~~Y~~g~f~Ing~~y~gsviv~p~~v---~~W~~~~-----~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~-~~l~~  101 (147)
                      |++..|++|+|+|||+.|.+|++|+|+++   .+|+...     +++|+++||+.  +++.+||+||||||.++ .++++
T Consensus         1 ~~I~~yg~G~~~i~g~~~~~sviv~p~g~v~~~~w~~~~~~~gt~~~l~~~~~~~--ll~~~~evlliGTG~~~~~~~~~   78 (118)
T 2cyj_A            1 MKIEEVRFGLVKIDGKEFDHDIVIYPSGRIERRMKEISKKKHGTSHKLDPEELEK--YLVEDFDVLLVGTGIYGMLSLLP   78 (118)
T ss_dssp             CCEEEEETTEEEETTEEESSCEEECTTSCEEECCTHHHHHHHSSTTEECHHHHHT--TTTSCCSEEEEEECTTCCCEECH
T ss_pred             CceeEecCCEEEECCEEEeeCEEEeCCCcccccccCccccccCCcccCCHHHHHH--HHhcCCCEEEECCCCCccccCCH
Confidence            57888999999999999999999999987   6666544     68899999996  56667999999999995 78999


Q ss_pred             HHHHHHHHcCCeEEEeChHHHHHHHHhhhhccceeEEEeec
Q 032090          102 ELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP  142 (147)
Q Consensus       102 ~l~~~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLlp  142 (147)
                      +++++|+++  ++|+|+|++||||||+|+ |||+|+|||..
T Consensus        79 ~~~~~l~~~--~ve~M~T~aAcrTYNiL~-EgRrV~aalh~  116 (118)
T 2cyj_A           79 ESKKLVEDK--EVIEKPTKEALKLLEELW-GKKRILAIIHV  116 (118)
T ss_dssp             HHHHHTTTS--EEEEECHHHHHHHHHHHB-TTBCEEEEEEC
T ss_pred             HHHHHHHHC--CcEEeCHHHHHHHHHHHh-cCCeEEEEEec
Confidence            999999999  999999999999999999 99999999953

>1ihn_A Hypothetical protein MTH938; methanobacterium thermoautotrophicum, unknown function; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.103.1.1

Probab=99.97  E-value=2.7e-33  Score=204.52  Aligned_cols=99  Identities=18%  Similarity=0.119  Sum_probs=86.0

Q ss_pred             CeeeEeCCcEEEcCEEEeeeEEEeCCce---ecCCCCC-----CCCCChhhhhchhhhcCCCcEEEEeecCCC-CCCCHH
Q 032090           32 PSLRYTDTGFTVNGVQYEGSLLCIGNLL---LSWTPKK-----FSEITPNCLSIFQLVRPIPEILILGCGRYI-EPVNPE  102 (147)
Q Consensus        32 ~~~~Y~~g~f~Ing~~y~gsviv~p~~v---~~W~~~~-----~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~-~~l~~~  102 (147)
                      ++..|++|+|+|||+.|.+|++|+|+++   .+|+...     +++|+++||+.  +++.+||+||||||.++ ..++++
T Consensus         3 ~I~~yg~G~~~i~g~~~~~sviv~p~g~v~~~~w~~~~~~~gt~~~l~~~~~~~--ll~~~~evlliGTG~~~~~~~~~~   80 (113)
T 1ihn_A            3 MFSDCRFGSVTYRGREYRSDIVVHVDGSVTPRRKEISRRKYGTSHVMAEEELEE--LLEEKPESIIIGSGVHGALETGFR   80 (113)
T ss_dssp             CEEEEETTEEEETTEEECSCEEECTTSCEEECCHHHHHHHHSSTTEECTHHHHH--HHTTCCSEEEEECCTTCCCEESSC
T ss_pred             ceeEEcCCEEEECCEEEeeCEEEeCCCcccccccCccccccCccccCCHHHHHH--HHhcCCCEEEECCCCCccccCChh
Confidence            5677999999999999999999999986   6565443     67899999995  55667999999999995 456666


Q ss_pred             HHHHHHHcCCeEEEeChHHHHHHHHhhhhccceeEEEee
Q 032090          103 LRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL  141 (147)
Q Consensus       103 l~~~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLl  141 (147)
                      ++         +|+|+|++||||||+|++|||+|+|||.
T Consensus        81 ~~---------ve~M~T~aAcrTYNiL~~EgRrV~aalh  110 (113)
T 1ihn_A           81 SD---------ATVLPTCEAIKRYNEERSAGRRVAAIIH  110 (113)
T ss_dssp             CS---------CEEECHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             hE---------EEEcChHHHHHHHHHHHhCCCeEEEEEe
Confidence            64         9999999999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	147
d2fvta1	127	c.103.1.1 (A:1-127) Hypothetical protein RPA2829 {	8e-34
d2fi9a1	118	c.103.1.1 (A:11-128) Hypothetical outer membrane p	4e-31
d2q4qa1	121	c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C	2e-21
d2cyja1	118	c.103.1.1 (A:1-118) Hypothetical protein PH1505 {P	5e-21
d1ihna_	113	c.103.1.1 (A:) Hypothetical protein MT938 (MTH938)	1e-16

>d2fvta1 c.103.1.1 (A:1-127) Hypothetical protein RPA2829 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 127

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein RPA2829
species: Rhodopseudomonas palustris [TaxId: 1076]

 Score =  112 bits (283), Expect = 8e-34
 Identities = 32/107 (29%), Positives = 51/107 (47%)

Query: 36  YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
           Y   GF   G+ ++GSLL + + +  W   K  +I    L          + LI+G G  
Sbjct: 19  YGKGGFYFAGMSHQGSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDNANAIDTLIVGTGAD 78

Query: 96  IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142
           +     +LR+ +R   + L+ + +  A  TYNI+  E R VAAAL+ 
Sbjct: 79  VWIAPRQLREALRGVNVVLDTMQTGPAIRTYNIMIGERRRVAAALIA 125

>d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein BH05650 {Bartonella henselae [TaxId: 38323]} Length = 118

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical outer membrane protein BH05650
species: Bartonella henselae [TaxId: 38323]

 Score =  106 bits (265), Expect = 4e-31
 Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 1/107 (0%)

Query: 36  YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 95
           Y + GF    + + GS++CI + +           T   +S         E+L++G G  
Sbjct: 11  YGNGGFRFADMSHRGSIICIPSGIYGI-DMTGPVPTQEDISRVLEESDQIEVLLIGTGVE 69

Query: 96  IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 142
           +  +  ELR  +    +  + + +  A  T+N+L  E R VAA L  
Sbjct: 70  LLRLPEELRVLLWEKRISSDTMSTGAAVRTFNVLLAEDRAVAALLFA 116

>d2q4qa1 c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C11orf67) {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein PTD015 (C11orf67)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (200), Expect = 2e-21
 Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 9/112 (8%)

Query: 36  YTDTGFTVNGVQYEGSLLCI---GNLLLSWT---PKKFSEITPNCLSIFQLVRPIPEILI 89
            +     V G         +   G+    W     +    + P    + ++V    + L+
Sbjct: 8   LSWGQMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPA--DVKEVVEKGVQTLV 65

Query: 90  LGCG-RYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAAL 140
           +G G      V     ++++  G+ +  + +  A   YN L  +G  V    
Sbjct: 66  IGRGMSEALKVPSSTVEYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVF 117

>d2cyja1 c.103.1.1 (A:1-118) Hypothetical protein PH1505 {Pyrococcus horikoshii [TaxId: 53953]} Length = 118

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein PH1505
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 80.4 bits (198), Expect = 5e-21
 Identities = 15/110 (13%), Positives = 45/110 (40%), Gaps = 9/110 (8%)

Query: 36  YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSE---ITPNCLS---IFQLVRPIPEILI 89
                  ++G +++  ++   +  +    K+ S+    T + L    + + +    ++L+
Sbjct: 6   VRFGLVKIDGKEFDHDIVIYPSGRIERRMKEISKKKHGTSHKLDPEELEKYLVEDFDVLL 65

Query: 90  LGCG-RYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAA 138
           +G G   +  + PE ++ +     ++    ++ A      L  + RI+A 
Sbjct: 66  VGTGIYGMLSLLPESKKLVE--DKEVIEKPTKEALKLLEELWGKKRILAI 113

>d1ihna_ c.103.1.1 (A:) Hypothetical protein MT938 (MTH938) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 113

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein MT938 (MTH938)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 68.8 bits (168), Expect = 1e-16
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 14/107 (13%)

Query: 40  GFTVNGVQYEGSLLCIGNLLLSWTPKKFS---EITPNCLS---IFQLVRPIPEILILGCG 93
             T  G +Y   ++   +  ++   K+ S     T + ++   + +L+   PE +I+G G
Sbjct: 11  SVTYRGREYRSDIVVHVDGSVTPRRKEISRRKYGTSHVMAEEELEELLEEKPESIIIGSG 70

Query: 94  RYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAAL 140
            +                     + +  A   YN     GR VAA +
Sbjct: 71  VHG--------ALETGFRSDATVLPTCEAIKRYNEERSAGRRVAAII 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	147
d2fi9a1	118	Hypothetical outer membrane protein BH05650 {Barto	100.0
d2fvta1	127	Hypothetical protein RPA2829 {Rhodopseudomonas pal	100.0
d2q4qa1	121	Hypothetical protein PTD015 (C11orf67) {Human (Hom	100.0
d2cyja1	118	Hypothetical protein PH1505 {Pyrococcus horikoshii	100.0
d1ihna_	113	Hypothetical protein MT938 (MTH938) {Archaeon Meth	99.97
d1gpua3	146	Transketolase (TK), C-domain {Baker's yeast (Sacch	83.52
d1itza3	136	Transketolase (TK), C-domain {Maize (Zea mays) [Ta	82.32

>d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein BH05650 {Bartonella henselae [TaxId: 38323]}

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical outer membrane protein BH05650
species: Bartonella henselae [TaxId: 38323]

Probab=100.00  E-value=6.5e-43  Score=254.62  Aligned_cols=118  Identities=23%  Similarity=0.296  Sum_probs=110.8

Q ss_pred             CCCCCCCeeeEeCCcEEEcCEEEeeeEEEeCCceecCCCCCCCCCChhhhhchhhhcCCCcEEEEeecCCCCCCCHHHHH
Q 032090           26 APNQPLPSLRYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQ  105 (147)
Q Consensus        26 ~~~~~~~~~~Y~~g~f~Ing~~y~gsviv~p~~v~~W~~~~~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~~~l~~~l~~  105 (147)
                      ||+++-++..|++|+|+|||+.|.||++++|+.++.|+.+. ++++.++++.+..+.++||+||||||++++++++++++
T Consensus         1 ~f~~~~~I~~Yg~g~f~I~g~~y~~siii~p~~i~~w~~~~-~~~~~~~~~~~~~~~~~peilliGtG~~~~~~~~~~~~   79 (118)
T d2fi9a1           1 HFPGRAPIDAYGNGGFRFADMSHRGSIICIPSGIYGIDMTG-PVPTQEDISRVLEESDQIEVLLIGTGVELLRLPEELRV   79 (118)
T ss_dssp             CBSSCCCEEEEETTEEEETTEEEESEEEEETTEEEEECCSS-SSCCTGGGHHHHHTGGGCSEEEEECTTSCCCCCHHHHH
T ss_pred             CCCCCCcEeeecCCEEEECCEEEecCEEEccCcEEEccCCC-cccCHHHHHHHHhccCCCCEEEEecCccccCCCHHHHH
Confidence            67888889999999999999999999999999999998765 67889999987767789999999999999999999999


Q ss_pred             HHHHcCCeEEEeChHHHHHHHHhhhhccceeEEEeecCC
Q 032090          106 FIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG  144 (147)
Q Consensus       106 ~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLlp~~  144 (147)
                      +|+++||++|+|+|++||||||+|++|||+|+|||||.+
T Consensus        80 ~l~~~gI~~EvM~T~aAcrTfNvL~sEgR~VaAaLipi~  118 (118)
T d2fi9a1          80 LLWEKRISSDTMSTGAAVRTFNVLLAEDRAVAALLFAVE  118 (118)
T ss_dssp             HHHHTTCEEEEECHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             HHHHcCCeEEEeCcHHHHHHHHHHHhcCccEEEEEEecC
Confidence            999999999999999999999999999999999999975

>d2fvta1 c.103.1.1 (A:1-127) Hypothetical protein RPA2829 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein RPA2829
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=100.00  E-value=3.8e-43  Score=259.01  Aligned_cols=118  Identities=27%  Similarity=0.346  Sum_probs=112.6

Q ss_pred             CCCCCCCeeeEeCCcEEEcCEEEeeeEEEeCCceecCCCCCCCCCChhhhhchhhhcCCCcEEEEeecCCCCCCCHHHHH
Q 032090           26 APNQPLPSLRYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQ  105 (147)
Q Consensus        26 ~~~~~~~~~~Y~~g~f~Ing~~y~gsviv~p~~v~~W~~~~~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~~~l~~~l~~  105 (147)
                      |+++..++..|++|+|+|||++|.+|++++|+.++.|+++++++++.++|+.+..++++||+||||||+++.++++++++
T Consensus         9 ~~~~~~~I~~Yg~g~f~I~g~~y~~siii~p~~~~~w~~~~~~~l~~~~l~~l~~l~~~peilliGtG~~~~~~~~~~~~   88 (127)
T d2fvta1           9 HFPRTAAIDAYGKGGFYFAGMSHQGSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDNANAIDTLIVGTGADVWIAPRQLRE   88 (127)
T ss_dssp             CCCSCCCCCCEETTEEECSSSEECSEEEECSSCEEEESCCSTTCCCTTTTHHHHHTTTSCSEEEEECTTSCCCCCHHHHH
T ss_pred             CCCCCCceEeeCCCeEEECCEEEecCEEEECCceecCCCCCcccCCHHHHHHHHhcCCCCCEEEEecCCccCCCCHHHHH
Confidence            55677788889999999999999999999999999999999999999999988778899999999999999999999999


Q ss_pred             HHHHcCCeEEEeChHHHHHHHHhhhhccceeEEEeecC
Q 032090          106 FIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPY  143 (147)
Q Consensus       106 ~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLlp~  143 (147)
                      +|+++||++|+|+|++||||||+|++|||+|+|||+|+
T Consensus        89 ~l~~~gI~vE~M~T~aAcrTfNvL~~EgR~V~AaLip~  126 (127)
T d2fvta1          89 ALRGVNVVLDTMQTGPAIRTYNIMIGERRRVAAALIAV  126 (127)
T ss_dssp             HHHTTTCEEEEECHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             HHHHCCCEEEEeCcHHHHHHHHHHHhcCCceEEEEecC
Confidence            99999999999999999999999999999999999986

>d2q4qa1 c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C11orf67) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein PTD015 (C11orf67)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-35  Score=213.38  Aligned_cols=108  Identities=15%  Similarity=0.224  Sum_probs=96.8

Q ss_pred             eeeEeCCcEEEcCEEEe-eeEEEeCCceecCCCC-----CCCCCChhhhhchhhhcCCCcEEEEeecCCC-CCCCHHHHH
Q 032090           33 SLRYTDTGFTVNGVQYE-GSLLCIGNLLLSWTPK-----KFSEITPNCLSIFQLVRPIPEILILGCGRYI-EPVNPELRQ  105 (147)
Q Consensus        33 ~~~Y~~g~f~Ing~~y~-gsviv~p~~v~~W~~~-----~~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~-~~l~~~l~~  105 (147)
                      +.+|++|+|+|+|..|. ++++|+|+++..|+++     +++.++++++.  ++++++||+||||||++. .++++++++
T Consensus         5 I~~~s~G~i~i~G~~~~~~di~v~P~g~~~w~~~~~g~~~~~~l~~~~l~--~~l~~~peilliGtG~~~~~~l~~~~~~   82 (121)
T d2q4qa1           5 IASLSWGQMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPADVK--EVVEKGVQTLVIGRGMSEALKVPSSTVE   82 (121)
T ss_dssp             EEEEETTEEEEETCSCCCSSEEEETTEEEECCGGGTTCCSSSCSCHHHHH--HHHTTCCSEEEEECCSSCCSCCCHHHHH
T ss_pred             eeeeeceeEEEcCeeeecCCEEEecCCceecccccCCCCcccccCHHHHH--HHhccCCCEEEEcCCCCcccCCCHHHHH
Confidence            44599999999999997 6999999999999743     56778888877  477899999999999874 568999999


Q ss_pred             HHHHcCCeEEEeChHHHHHHHHhhhhccceeEEEeec
Q 032090          106 FIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP  142 (147)
Q Consensus       106 ~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLlp  142 (147)
                      +|+++||++|+|+|++||||||+|++|||+|+|+|..
T Consensus        83 ~l~~~gi~ve~m~T~~AcrtyNvL~~EgR~V~Aalh~  119 (121)
T d2q4qa1          83 YLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVFHS  119 (121)
T ss_dssp             HHHTTTCEEEEECHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             HHHHcCCceEEeCHHHHHHHHHHHHhCCCcEEEEEec
Confidence            9999999999999999999999999999999999963

>d2cyja1 c.103.1.1 (A:1-118) Hypothetical protein PH1505 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein PH1505
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=7.6e-34  Score=206.47  Aligned_cols=107  Identities=11%  Similarity=0.079  Sum_probs=89.1

Q ss_pred             CCeeeEeCCcEEEcCEEEeeeEEEeCCceecCCCC--------CCCCCChhhhhchhhhcCCCcEEEEeecCCCCCCCHH
Q 032090           31 LPSLRYTDTGFTVNGVQYEGSLLCIGNLLLSWTPK--------KFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPE  102 (147)
Q Consensus        31 ~~~~~Y~~g~f~Ing~~y~gsviv~p~~v~~W~~~--------~~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~~~l~~~  102 (147)
                      |.+.+|++|+|+|||++|++|++|+|++...|+.+        +.++++.++|+.  +++++||+||||||+...+++++
T Consensus         1 ~~I~~~~~G~i~I~g~~y~~siiV~P~g~i~~~~~~~s~~~~~t~~~l~~~dl~~--~l~~~peilliGtG~~~~~~~~~   78 (118)
T d2cyja1           1 MKIEEVRFGLVKIDGKEFDHDIVIYPSGRIERRMKEISKKKHGTSHKLDPEELEK--YLVEDFDVLLVGTGIYGMLSLLP   78 (118)
T ss_dssp             CCEEEEETTEEEETTEEESSCEEECTTSCEEECCTHHHHHHHSSTTEECHHHHHT--TTTSCCSEEEEEECTTCCCEECH
T ss_pred             CeeccccCCEEEECCEEEecCEEEcCCCccccccccccccccCCcccCCHHHHHH--HhccCCCEEEEecCCCccCCChH
Confidence            56777999999999999999999999987766653        467899999885  66889999999999997765444


Q ss_pred             HHHHHHHcCCeEEEeChHHHHHHHHhhhhccceeEEEee
Q 032090          103 LRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL  141 (147)
Q Consensus       103 l~~~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLl  141 (147)
                      ....+. +||++|+|+|++||||||+|++|+| |+|+|.
T Consensus        79 ~~~~~~-~~i~ve~m~T~~AcrtyNvL~~e~R-v~A~lh  115 (118)
T d2cyja1          79 ESKKLV-EDKEVIEKPTKEALKLLEELWGKKR-ILAIIH  115 (118)
T ss_dssp             HHHHHT-TTSEEEEECHHHHHHHHHHHBTTBC-EEEEEE
T ss_pred             HHHHHH-hCCCEEEEChHHHHHHHHHHhcCCc-eEEEEE
Confidence            444443 5999999999999999999999866 777764

>d1ihna_ c.103.1.1 (A:) Hypothetical protein MT938 (MTH938) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein MT938 (MTH938)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.97  E-value=3.9e-31  Score=191.16  Aligned_cols=99  Identities=19%  Similarity=0.156  Sum_probs=85.4

Q ss_pred             eeEeCCcEEEcCEEEeeeEEEeCCceecCCCC--------CCCCCChhhhhchhhhcCCCcEEEEeecCCCCCCCHHHHH
Q 032090           34 LRYTDTGFTVNGVQYEGSLLCIGNLLLSWTPK--------KFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQ  105 (147)
Q Consensus        34 ~~Y~~g~f~Ing~~y~gsviv~p~~v~~W~~~--------~~~~l~~e~l~~l~~l~~~pEvlIIGTG~~~~~l~~~l~~  105 (147)
                      ..|++|+|+|||++|++||+|+|++...|+.+        ++++++++++..  +++.+||++|||||+...++.     
T Consensus         5 ~~~~~G~~~I~G~~Y~~sViv~p~g~v~~~~~~~s~~~~~t~~~l~~~dl~~--ll~~~peiiliGtG~~~~~~~-----   77 (113)
T d1ihna_           5 SDCRFGSVTYRGREYRSDIVVHVDGSVTPRRKEISRRKYGTSHVMAEEELEE--LLEEKPESIIIGSGVHGALET-----   77 (113)
T ss_dssp             EEEETTEEEETTEEECSCEEECTTSCEEECCHHHHHHHHSSTTEECTHHHHH--HHTTCCSEEEEECCTTCCCEE-----
T ss_pred             cceeccEEEECCEEeecCEEEcCCCceecccccccccccCccccCCHHHHHH--HHhcCCCEEEEecCccccccc-----
Confidence            44999999999999999999999986544322        578899999885  667789999999999966543     


Q ss_pred             HHHHcCCeEEEeChHHHHHHHHhhhhccceeEEEeec
Q 032090          106 FIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP  142 (147)
Q Consensus       106 ~l~~~GI~vEvM~T~aAcrTyNiL~sEGR~VaAaLlp  142 (147)
                         ..||++|+|+|++||||||+|++|||+|+|+|..
T Consensus        78 ---~~~i~~e~m~T~~AcrtyN~L~~egR~v~A~lh~  111 (113)
T d1ihna_          78 ---GFRSDATVLPTCEAIKRYNEERSAGRRVAAIIHV  111 (113)
T ss_dssp             ---SSCCSCEEECHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             ---CCCCcEEEEChHHHHHHHHHHHhCCCeEEEEEEe
Confidence               3599999999999999999999999999999964

>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.52  E-value=0.15  Score=35.95  Aligned_cols=54  Identities=9%  Similarity=0.154  Sum_probs=35.5

Q ss_pred             CCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChH--H-----HHHHHHhhhhccceeE
Q 032090           83 PIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSR--N-----AASTYNILNEEGRIVA  137 (147)
Q Consensus        83 ~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T~--a-----AcrTyNiL~sEGR~Va  137 (147)
                      .+||+.||+||... .+--+..+.|++.||.+.|.+.+  .     .....+.++.++..+.
T Consensus        19 ~~pdvtiiAsGsev-~~AleAa~~L~~~GI~v~Vvs~ps~~~~~~q~~~~~~~~~~~~~~~v   79 (146)
T d1gpua3          19 ANPDIILVATGSEV-SLSVEAAKTLAAKNIKARVVSLPDFFTFDKQPLEYRLSVLPDNVPIM   79 (146)
T ss_dssp             SSCSEEEEECTHHH-HHHHHHHHHHHTTTCCEEEEECSCHHHHHHSCHHHHHHHSCSSSCEE
T ss_pred             CCCCEEEEEeCHHH-HHHHHHHHHHHhhccCccEEEeehhhHHHhhhHHHhhhhccccccee
Confidence            46899999999752 23345567899999998775443  2     3344555665555544

>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TK C-terminal domain-like
superfamily: TK C-terminal domain-like
family: Transketolase C-terminal domain-like
domain: Transketolase (TK), C-domain
species: Maize (Zea mays) [TaxId: 4577]

Probab=82.32  E-value=0.24  Score=33.85  Aligned_cols=36  Identities=14%  Similarity=0.430  Sum_probs=28.0

Q ss_pred             CCCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeCh
Q 032090           83 PIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDS  119 (147)
Q Consensus        83 ~~pEvlIIGTG~~~~~l~~~l~~~l~~~GI~vEvM~T  119 (147)
                      .+||+.||+||... ..--+..+.|++.||.+.+.+.
T Consensus        22 ~~~dv~liasGs~v-~~al~Aa~~L~~~gi~~~Vvs~   57 (136)
T d1itza3          22 NKPDLIVMGTGSEL-EIAAKAADELRKEGKTVRVVSF   57 (136)
T ss_dssp             TCCSEEEEECGGGH-HHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCCEEEEEecHHH-HHHHHHHHHHHhcccccccccc
Confidence            46899999999753 2334566789999999999765