Citrus Sinensis ID: 032112

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MMDPSDKGFESDEVNSSGSKRLDGVSSDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGITKEEKKSKRGNSNSSSNSSSNKLGDSLKQRLYALGREVLMQRSSVEKQRKTLGEEEQAAVLLMALSYGSVYA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccHHHHccccHHHHHHccccccccccccccccccHHHHHHHcccHHHHHcccHHHHccccccHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccEEEcccccccccccccccccccHHHHHHcHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHccccEcc
Coil and Loop (DISEMBL)
mmdpsdkgfesdevnssgskrldgvssdensikktcadcgttktplwrggpagpkslcnacgirsrkkRRAILGItkeekkskrgnsnsssnsssnklgdSLKQRLYALGREVLMQRSSVEKQRKTLGEEEQAAVLLMALSYGSVYA
Flexible Loop (DISEMBL)
mmdpsdkgfesdevnssgskrldgvssdensikktcadcgttktplwrggpagpkslcnacgirsrkkrrailgitkeekkskrgnsnsssnsssnklgdsLKQRLYALGREVLMQRSSVEKQRKTLGEEEQAAVLLMALSYGSVYA
Low Complexity Region (SEG)
MMDPSDKGFESDEVNSSGSKRLDGVSSDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGITKEEkkskrgnsnsssnsssnkLGDSLKQRLYALGREVLMQRSSVEKQRKTLGEEEQAAVLLMALSYGSVYA
Disordered region (IsUnstruct)
***********************************CADCGTTKTPLWRGGPAGPKSLCNACGIR*********************************************************************AVLLMALSY*****
Disordered Region (DISOPRED)
*************************************DCGTTKTPLWRGGPAGPKSLCNACGIRS********************************************************************AVLLMALSYGSVYA
Disordered Region (DISEMBL)
******************************SIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGITKE********************GDSLKQRLYALGREVLMQRSSVEKQRKTLGEEEQAAVLLMALSYGSVYA
Disordered Region (DISPRO)
*******************************IKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRA*************************************************EKQRKTLGEEEQAAVLLMALSYGSVYA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMDPSDKGFESDEVNSSGSKRLDGVSSDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGITKEEKKSKRGNSNSSSNSSSNKLGDSLKQRLYALGREVLMQRSSVEKQRKTLGEEEQAAVLLMALSYGSVYA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
Q8LG10	149	GATA transcription factor	yes	no	0.925	0.912	0.562	4e-39
Q9FJ10	139	GATA transcription factor	no	no	0.931	0.985	0.577	1e-36
Q9LIB5	190	GATA transcription factor	no	no	0.782	0.605	0.48	6e-26
Q8LC59	120	GATA transcription factor	no	no	0.326	0.4	0.653	1e-13
Q5HZ36	398	GATA transcription factor	no	no	0.272	0.100	0.707	2e-13
Q9SZI6	352	Putative GATA transcripti	no	no	0.877	0.366	0.335	3e-13
Q9ZPX0	208	GATA transcription factor	no	no	0.278	0.197	0.658	3e-11
Q6QPM2	211	GATA transcription factor	no	no	0.285	0.199	0.642	3e-11
Q8LC79	295	GATA transcription factor	no	no	0.306	0.152	0.6	1e-10
Q6DBP8	303	GATA transcription factor	no	no	0.299	0.145	0.568	9e-10

>sp|Q8LG10|GAT15_ARATH GATA transcription factor 15 OS=Arabidopsis thaliana GN=GATA15 PE=2 SV=2

 Score =  160 bits (404), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 90/160 (56%), Positives = 107/160 (66%), Gaps = 24/160 (15%)

Query: 1   MMDPSDKGFESDEVNSSGSKRLDGVSSDENSI-----------KKTCADCGTTKTPLWRG 49
           M+DP++K  +S+ + S    +L  V + E              KK+CA CGT+KTPLWRG
Sbjct: 1   MLDPTEKVIDSESMES----KLTSVDAIEEHSSSSSNEAISNEKKSCAICGTSKTPLWRG 56

Query: 50  GPAGPKSLCNACGIRSRKKRRAILGITKEEKKSKRGNSNSSSNSSSNKLGDSLKQRLYAL 109
           GPAGPKSLCNACGIR+RKKRR ++    E+KK K  N N        K GDSLKQRL  L
Sbjct: 57  GPAGPKSLCNACGIRNRKKRRTLISNRSEDKKKKSHNRNP-------KFGDSLKQRLMEL 109

Query: 110 GREVLMQRSSVEKQRKT-LGEEEQAAVLLMALSYG-SVYA 147
           GREV+MQRS+ E QR+  LGEEEQAAVLLMALSY  SVYA
Sbjct: 110 GREVMMQRSTAENQRRNKLGEEEQAAVLLMALSYASSVYA 149

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ10|GAT16_ARATH GATA transcription factor 16 OS=Arabidopsis thaliana GN=GATA16 PE=2 SV=1

 Score =  152 bits (383), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/149 (57%), Positives = 107/149 (71%), Gaps = 12/149 (8%)

Query: 1   MMDPSDKGF--ESDEVNSSGSKRLDGVSSDENSIKKTCADCGTTKTPLWRGGPAGPKSLC 58
           M+D S+K    +S+ + +     ++  ++  N  KKTCADCGT+KTPLWRGGP GPKSLC
Sbjct: 1   MLDHSEKVLLVDSETMKTRAEDMIEQNNTSVNDKKKTCADCGTSKTPLWRGGPVGPKSLC 60

Query: 59  NACGIRSRKKRRAILGITKEEKKSKRGNSNSSSNSSSNKLGDSLKQRLYALGREVLMQRS 118
           NACGIR+RKKRR   G T++ KK K+    SSS   + K G+SLKQ L  LG   + +RS
Sbjct: 61  NACGIRNRKKRR---GGTEDNKKLKK----SSSGGGNRKFGESLKQSLMDLG---IRKRS 110

Query: 119 SVEKQRKTLGEEEQAAVLLMALSYGSVYA 147
           +VEKQR+ LGEEEQAAVLLMALSYGSVYA
Sbjct: 111 TVEKQRQKLGEEEQAAVLLMALSYGSVYA 139

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIB5|GAT17_ARATH GATA transcription factor 17 OS=Arabidopsis thaliana GN=GATA17 PE=2 SV=1

 Score =  116 bits (290), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/150 (48%), Positives = 88/150 (58%), Gaps = 35/150 (23%)

Query: 33  KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGITKEEKKSKR-GNSNS-- 89
           K+TC DCGT +TPLWRGGPAGPKSLCNACGI+SRKKR+A LG+  EEKK  R  N N+  
Sbjct: 41  KRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMRSEEKKKNRKSNCNNDL 100

Query: 90  ---SSNSSSNKLGDSLKQ--------------------------RLYALGREV-LMQRSS 119
                N+   K+                                +   LG +V +M+RS+
Sbjct: 101 NLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRSSSSSSNKGVSKFLDLGFKVPVMKRSA 160

Query: 120 VEKQR--KTLGEEEQAAVLLMALSYGSVYA 147
           VEK+R  + LGEEE+AAVLLMALS  SVYA
Sbjct: 161 VEKKRLWRKLGEEERAAVLLMALSCSSVYA 190

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC59|GAT23_ARATH GATA transcription factor 23 OS=Arabidopsis thaliana GN=GATA23 PE=2 SV=2

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 40/49 (81%), Gaps = 1/49 (2%)

Query: 28 DENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRA-ILGI 75
          +E    + C++C TTKTP+WRGGP GPKSLCNACGIR RK+RR+ +LGI
Sbjct: 20 EEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGI 68

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5HZ36|GAT21_ARATH GATA transcription factor 21 OS=Arabidopsis thaliana GN=GATA21 PE=1 SV=2

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 29/41 (70%), Positives = 33/41 (80%)

Query: 27  SDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 67
           S+ N + + C+DC TTKTPLWR GP GPKSLCNACGIR RK
Sbjct: 223 SNNNGVIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRK 263

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZI6|GAT22_ARATH Putative GATA transcription factor 22 OS=Arabidopsis thaliana GN=GATA22 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 81/173 (46%), Gaps = 44/173 (25%)

Query: 15  NSSGSKRLDGVSSDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIR---------S 65
           N S S+R +G ++D   + + C+DC TTKTPLWR GP GPKSLCNACGIR         +
Sbjct: 182 NLSNSERQNGYNND--CVIRICSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAMA 239

Query: 66  RKKRRAILGITKEEKKSKRGNSNSSSN--------------------------------S 93
                A+ G++    K K  N N  SN                                +
Sbjct: 240 TATATAVSGVSPPVMKKKMQNKNKISNGVYKILSPLPLKVNTCKRMITLEETALAEDLET 299

Query: 94  SSNKLGDSLKQRLYALGREVLMQRSSVEKQRKTLGEEEQAAVLLMALSYGSVY 146
            SN    S    +Y     +L+ +SS  +Q     +E++AA+LLMALS+G V+
Sbjct: 300 QSNSTMLSSSDNIYFDDLALLLSKSSAYQQVFP-QDEKEAAILLMALSHGMVH 351

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPX0|GAT20_ARATH GATA transcription factor 20 OS=Arabidopsis thaliana GN=GATA20 PE=2 SV=2

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 32/41 (78%)

Query: 30  NSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70
           +S+ + CA C TT TPLWR GP GPKSLCNACGIR +K+ R
Sbjct: 88  HSLPRRCASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 128

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6QPM2|GAT19_ARATH GATA transcription factor 19 OS=Arabidopsis thaliana GN=GATA19 PE=2 SV=2

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/42 (64%), Positives = 32/42 (76%)

Query: 29  ENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70
            N + + CA+C TT TPLWR GP GPKSLCNACGIR +K+ R
Sbjct: 70  HNLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 111

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC79|GAT18_ARATH GATA transcription factor 18 OS=Arabidopsis thaliana GN=GATA18 PE=2 SV=2

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 32/45 (71%)

Query: 32  IKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGIT 76
           + + CA+C TT TPLWR GP GPKSLCNACGIR +K+ R     T
Sbjct: 150 LARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRTTAAT 194

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBP8|GAT11_ARATH GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 32/44 (72%)

Query: 26  SSDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKR 69
           +S+ + I + C  C TTKTP WR GP+GPK+LCNACG+R R  R
Sbjct: 212 ASNSDGIVRKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGR 255

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
225431869	153	PREDICTED: GATA transcription factor 16	1.0	0.960	0.660	4e-47
449432898	148	PREDICTED: GATA transcription factor 16-	0.972	0.966	0.708	2e-45
255556286	149	GATA transcription factor, putative [Ric	0.952	0.939	0.634	5e-43
449432896	151	PREDICTED: GATA transcription factor 16-	0.931	0.907	0.696	3e-41
224110254	125	predicted protein [Populus trichocarpa]	0.761	0.896	0.685	3e-39
18397703	149	GATA transcription factor 15 [Arabidopsi	0.925	0.912	0.562	2e-37
297829216	137	hypothetical protein ARALYDRAFT_477989 [	0.775	0.832	0.661	1e-36
388516305	144	unknown [Lotus japonicus]	0.952	0.972	0.589	4e-36
7549639	136	hypothetical protein [Arabidopsis thalia	0.734	0.794	0.692	5e-36
21536761	136	unknown [Arabidopsis thaliana]	0.734	0.794	0.683	9e-36

>gi|225431869|ref|XP_002275498.1| PREDICTED: GATA transcription factor 16 [Vitis vinifera] gi|296083288|emb|CBI22924.3| unnamed protein product [Vitis vinifera]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 101/153 (66%), Positives = 122/153 (79%), Gaps = 6/153 (3%)

Query: 1   MMDPSDKGFESDEVNSSGSKRLDGVSSDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNA 60
           M+D S+KG ES+++N+     +    S  N  KKTCADCGTTKTPLWRGGPAGPKSLCNA
Sbjct: 1   MVDLSEKGSESEDMNNKNPDAVSSAESQVNEPKKTCADCGTTKTPLWRGGPAGPKSLCNA 60

Query: 61  CGIRSRKKRRAILGITK---EEKKSKR---GNSNSSSNSSSNKLGDSLKQRLYALGREVL 114
           CGIRSRKKRRA LG+ K   +++K+KR    + N+   + +NKLGDSLK+RL+ALGREVL
Sbjct: 61  CGIRSRKKRRAFLGLNKGSTDDRKAKRSSNHSHNNGGGNGNNKLGDSLKRRLFALGREVL 120

Query: 115 MQRSSVEKQRKTLGEEEQAAVLLMALSYGSVYA 147
           +QRS+VEKQR+ LGEEEQAAVLLMALSYG VYA
Sbjct: 121 LQRSTVEKQRRKLGEEEQAAVLLMALSYGYVYA 153

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432898|ref|XP_004134235.1| PREDICTED: GATA transcription factor 16-like isoform 2 [Cucumis sativus]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 107/151 (70%), Positives = 125/151 (82%), Gaps = 8/151 (5%)

Query: 1   MMDPSDKGFESDEVNSSGSKRLDGVSSDENSI----KKTCADCGTTKTPLWRGGPAGPKS 56
           MMDPSD+G ES++++   S    GVSS+E+ +    KKTCADCGT+KTPLWRGGPAGPKS
Sbjct: 2   MMDPSDRGSESEDMSGKNS---SGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKS 58

Query: 57  LCNACGIRSRKKRRAILGITKEEKKSKRGNSNSSSNSSSNKLGDSLKQRLYALGREVLMQ 116
           LCNACGIRSRKKRRAILG++K   + K+ N  SS+ SS++K  DSLKQRL ALGREVLMQ
Sbjct: 59  LCNACGIRSRKKRRAILGLSKGVVEDKK-NKKSSNISSNSKFRDSLKQRLLALGREVLMQ 117

Query: 117 RSSVEKQRKTLGEEEQAAVLLMALSYGSVYA 147
           RS+VE+QRK LGEEEQAAVLLMALS GSVYA
Sbjct: 118 RSTVERQRKKLGEEEQAAVLLMALSCGSVYA 148

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556286|ref|XP_002519177.1| GATA transcription factor, putative [Ricinus communis] gi|223541492|gb|EEF43041.1| GATA transcription factor, putative [Ricinus communis]

 Score =  178 bits (452), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 99/156 (63%), Positives = 122/156 (78%), Gaps = 16/156 (10%)

Query: 1   MMDPSDKGFESDEVNSSGSKRLDGVSSDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNA 60
           M+DPS+K  E ++++S  ++        EN  KK+CADCGTTKTPLWRGGPAGPKSLCNA
Sbjct: 1   MLDPSEKILEFEDMSSKSAE-------GENQQKKSCADCGTTKTPLWRGGPAGPKSLCNA 53

Query: 61  CGIRSRKKRRAILGITK----EEKKSKRGNSNSSSNSSSN-----KLGDSLKQRLYALGR 111
           CGIRSRKK+R  LG+ +     +KKS++ +S++ S+++ N     +LGD LKQRL ALGR
Sbjct: 54  CGIRSRKKKRDSLGLNRASSNPDKKSRKHSSSNGSSNNHNSNNSNRLGDGLKQRLLALGR 113

Query: 112 EVLMQRSSVEKQRKTLGEEEQAAVLLMALSYGSVYA 147
           EVLMQRSSVEKQR+ LGEEEQAAVLLMALSYGSVYA
Sbjct: 114 EVLMQRSSVEKQRRKLGEEEQAAVLLMALSYGSVYA 149

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432896|ref|XP_004134234.1| PREDICTED: GATA transcription factor 16-like isoform 1 [Cucumis sativus]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 101/145 (69%), Positives = 119/145 (82%), Gaps = 8/145 (5%)

Query: 7   KGFESDEVNSSGSKRLDGVSSDENSI----KKTCADCGTTKTPLWRGGPAGPKSLCNACG 62
           +G ES++++   S    GVSS+E+ +    KKTCADCGT+KTPLWRGGPAGPKSLCNACG
Sbjct: 11  QGSESEDMSGKNS---SGVSSEESQVNEQNKKTCADCGTSKTPLWRGGPAGPKSLCNACG 67

Query: 63  IRSRKKRRAILGITKEEKKSKRGNSNSSSNSSSNKLGDSLKQRLYALGREVLMQRSSVEK 122
           IRSRKKRRAILG++K   + K+ N  SS+ SS++K  DSLKQRL ALGREVLMQRS+VE+
Sbjct: 68  IRSRKKRRAILGLSKGVVEDKK-NKKSSNISSNSKFRDSLKQRLLALGREVLMQRSTVER 126

Query: 123 QRKTLGEEEQAAVLLMALSYGSVYA 147
           QRK LGEEEQAAVLLMALS GSVYA
Sbjct: 127 QRKKLGEEEQAAVLLMALSCGSVYA 151

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110254|ref|XP_002315462.1| predicted protein [Populus trichocarpa] gi|222864502|gb|EEF01633.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 85/124 (68%), Positives = 102/124 (82%), Gaps = 12/124 (9%)

Query: 29  ENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGITK-----EEKKSK 83
           E+  KKTCADCGT+KTPLWRGGPAGPKSLCNACGIRSRKK+R ILG+ K      +K++K
Sbjct: 9   ESPQKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRDILGLNKGGAAANDKRAK 68

Query: 84  RGNSNSSSNSSSNKLGDSLKQRLYALGREVLMQRSSVEKQRKTLGEEEQAAVLLMALSYG 143
           +G++N+ S+       D LKQRL ALGREVL+Q S+VE++R+ LGEEEQAAVLLMALSYG
Sbjct: 69  KGSTNNGSS-------DGLKQRLLALGREVLVQGSTVERRRRKLGEEEQAAVLLMALSYG 121

Query: 144 SVYA 147
           SVYA
Sbjct: 122 SVYA 125

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397703|ref|NP_566290.1| GATA transcription factor 15 [Arabidopsis thaliana] gi|71660789|sp|Q8LG10.2|GAT15_ARATH RecName: Full=GATA transcription factor 15 gi|17380940|gb|AAL36282.1| unknown protein [Arabidopsis thaliana] gi|20258947|gb|AAM14189.1| unknown protein [Arabidopsis thaliana] gi|332640929|gb|AEE74450.1| GATA transcription factor 15 [Arabidopsis thaliana]

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/160 (56%), Positives = 107/160 (66%), Gaps = 24/160 (15%)

Query: 1   MMDPSDKGFESDEVNSSGSKRLDGVSSDENSI-----------KKTCADCGTTKTPLWRG 49
           M+DP++K  +S+ + S    +L  V + E              KK+CA CGT+KTPLWRG
Sbjct: 1   MLDPTEKVIDSESMES----KLTSVDAIEEHSSSSSNEAISNEKKSCAICGTSKTPLWRG 56

Query: 50  GPAGPKSLCNACGIRSRKKRRAILGITKEEKKSKRGNSNSSSNSSSNKLGDSLKQRLYAL 109
           GPAGPKSLCNACGIR+RKKRR ++    E+KK K  N N        K GDSLKQRL  L
Sbjct: 57  GPAGPKSLCNACGIRNRKKRRTLISNRSEDKKKKSHNRNP-------KFGDSLKQRLMEL 109

Query: 110 GREVLMQRSSVEKQRKT-LGEEEQAAVLLMALSYG-SVYA 147
           GREV+MQRS+ E QR+  LGEEEQAAVLLMALSY  SVYA
Sbjct: 110 GREVMMQRSTAENQRRNKLGEEEQAAVLLMALSYASSVYA 149

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829216|ref|XP_002882490.1| hypothetical protein ARALYDRAFT_477989 [Arabidopsis lyrata subsp. lyrata] gi|297328330|gb|EFH58749.1| hypothetical protein ARALYDRAFT_477989 [Arabidopsis lyrata subsp. lyrata]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/127 (66%), Positives = 97/127 (76%), Gaps = 13/127 (10%)

Query: 23  DGVSSDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGITKEEKKS 82
           +G+S++    KK+CA CGT+KTPLWRGGPAGPKSLCNACGIR+RKKRR ++    E+KK+
Sbjct: 22  EGISNE----KKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTLISNRSEDKKN 77

Query: 83  KRGNSNSSSNSSSNKLGDSLKQRLYALGREVLMQRSSVEKQ-RKTLGEEEQAAVLLMALS 141
           K  N N        K GDSLKQRL  LGREV+MQRS+ E Q RK LGEEEQAAVLLMALS
Sbjct: 78  KNHNRNP-------KFGDSLKQRLMELGREVMMQRSTAENQRRKKLGEEEQAAVLLMALS 130

Query: 142 YG-SVYA 147
           Y  SVYA
Sbjct: 131 YASSVYA 137

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516305|gb|AFK46214.1| unknown [Lotus japonicus]

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 89/151 (58%), Positives = 108/151 (71%), Gaps = 11/151 (7%)

Query: 1   MMDPSDKGFESDEVNSSGSKRLDGVSSDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNA 60
           M+DP+ KG ++++ N + +       S++   KKTCADCGT+KTPLWRGGPAGPKSLCNA
Sbjct: 1   MVDPTGKGSDAEDGNPNSAAAAASSGSEQ---KKTCADCGTSKTPLWRGGPAGPKSLCNA 57

Query: 61  CGIRSRKKRRAILGITK-EEKKSKRGNSNSSSNSSSNKLGD---SLKQRLYALGREVLMQ 116
           CGIRSRKK+R ILGI+K     +   N +       +KLG    SLKQ+L ALGREVLMQ
Sbjct: 58  CGIRSRKKKRVILGISKGNSNNNNSNNEDGIKKGKRSKLGGDRASLKQKLLALGREVLMQ 117

Query: 117 RSSVEKQRKTLGEEEQAAVLLMALSYGSVYA 147
           RS  +K    LGEEEQAAVLLM+LSYGSVYA
Sbjct: 118 RSHWKK----LGEEEQAAVLLMSLSYGSVYA 144

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7549639|gb|AAF63824.1| hypothetical protein [Arabidopsis thaliana]

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 81/117 (69%), Positives = 90/117 (76%), Gaps = 9/117 (7%)

Query: 33  KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGITKEEKKSKRGNSNSSSN 92
           KK+CA CGT+KTPLWRGGPAGPKSLCNACGIR+RKKRR ++    E+KK K  N N    
Sbjct: 27  KKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTLISNRSEDKKKKSHNRNP--- 83

Query: 93  SSSNKLGDSLKQRLYALGREVLMQRSSVEKQRKT-LGEEEQAAVLLMALSYG-SVYA 147
               K GDSLKQRL  LGREV+MQRS+ E QR+  LGEEEQAAVLLMALSY  SVYA
Sbjct: 84  ----KFGDSLKQRLMELGREVMMQRSTAENQRRNKLGEEEQAAVLLMALSYASSVYA 136

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536761|gb|AAM61093.1| unknown [Arabidopsis thaliana]

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 80/117 (68%), Positives = 90/117 (76%), Gaps = 9/117 (7%)

Query: 33  KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGITKEEKKSKRGNSNSSSN 92
           KK+CA CGT+KTPLWRGGPAGPKSLCNACGIR+RKKRR ++    E+KK K  N N    
Sbjct: 27  KKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTLISNRSEDKKKKSHNRNP--- 83

Query: 93  SSSNKLGDSLKQRLYALGREVLMQRSSVEKQRKT-LGEEEQAAVLLMALSYG-SVYA 147
               K GDSL+QRL  LGREV+MQRS+ E QR+  LGEEEQAAVLLMALSY  SVYA
Sbjct: 84  ----KFGDSLRQRLMELGREVMMQRSTAENQRRNKLGEEEQAAVLLMALSYASSVYA 136

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
TAIR|locus:2083388	149	GATA15 "GATA transcription fac	0.945	0.932	0.541	1.2e-33
TAIR|locus:2155919	139	GATA16 "GATA transcription fac	0.931	0.985	0.530	4.7e-32
TAIR|locus:2093678	190	GATA17 "GATA transcription fac	0.469	0.363	0.623	2.3e-29
TAIR|locus:504955441	197	AT4G16141 [Arabidopsis thalian	0.448	0.335	0.6	1.2e-26
TAIR|locus:2120845	352	CGA1 "cytokinin-responsive gat	0.469	0.196	0.541	2.4e-20
TAIR|locus:2148558	120	GATA23 "GATA transcription fac	0.326	0.4	0.653	7.3e-20
TAIR|locus:2170277	398	GNC "GATA, nitrate-inducible,	0.319	0.118	0.680	1.8e-19
TAIR|locus:2115195	211	GATA19 "GATA transcription fac	0.360	0.251	0.574	4.4e-13
TAIR|locus:2062095	208	GATA20 "GATA transcription fac	0.278	0.197	0.658	5e-12
TAIR|locus:2077932	295	MNP "MONOPOLE" [Arabidopsis th	0.414	0.206	0.491	8.7e-12

TAIR|locus:2083388 GATA15 "GATA transcription factor 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 85/157 (54%), Positives = 103/157 (65%)

Query:     1 MMDPSDKGFESDEVNSSGSKRLDGV----SSDENSI----KKTCADCGTTKTPLWRGGPA 52
             M+DP++K  +S+ + S  +  +D +    SS  N      KK+CA CGT+KTPLWRGGPA
Sbjct:     1 MLDPTEKVIDSESMESKLTS-VDAIEEHSSSSSNEAISNEKKSCAICGTSKTPLWRGGPA 59

Query:    53 GPKSLCNACGIRSRKKRRAILGITKEEXXXXXXXXXXXXXXXXXXLGDSLKQRLYALGRE 112
             GPKSLCNACGIR+RKKRR ++    E+                   GDSLKQRL  LGRE
Sbjct:    60 GPKSLCNACGIRNRKKRRTLISNRSEDKKKKSHNRNPK-------FGDSLKQRLMELGRE 112

Query:   113 VLMQRSSVEKQRKT-LGEEEQAAVLLMALSYGS-VYA 147
             V+MQRS+ E QR+  LGEEEQAAVLLMALSY S VYA
Sbjct:   113 VMMQRSTAENQRRNKLGEEEQAAVLLMALSYASSVYA 149

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2155919 GATA16 "GATA transcription factor 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 79/149 (53%), Positives = 98/149 (65%)

Query:     1 MMDPSDKGF--ESDEVNSSGSKRLDGVSSDENSIKKTCADCGTTKTPLWRGGPAGPKSLC 58
             M+D S+K    +S+ + +     ++  ++  N  KKTCADCGT+KTPLWRGGP GPKSLC
Sbjct:     1 MLDHSEKVLLVDSETMKTRAEDMIEQNNTSVNDKKKTCADCGTSKTPLWRGGPVGPKSLC 60

Query:    59 NACGIRSRKKRRAILGITKEEXXXXXXXXXXXXXXXXXXLGDSLKQRLYALGREVLMQRS 118
             NACGIR+RKKRR   G T++                    G+SLKQ L  LG   + +RS
Sbjct:    61 NACGIRNRKKRR---GGTEDNKKLKKSSSGGGNRK----FGESLKQSLMDLG---IRKRS 110

Query:   119 SVEKQRKTLGEEEQAAVLLMALSYGSVYA 147
             +VEKQR+ LGEEEQAAVLLMALSYGSVYA
Sbjct:   111 TVEKQRQKLGEEEQAAVLLMALSYGSVYA 139

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2093678 GATA17 "GATA transcription factor 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
 Identities = 43/69 (62%), Positives = 49/69 (71%)

Query:    11 SDEVNSSGSKRLDGVSSDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70
             SD  N + S    G  S     K+TC DCGT +TPLWRGGPAGPKSLCNACGI+SRKKR+
Sbjct:    19 SDVDNENCSSSGSGGGSSSGDTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQ 78

Query:    71 AILGITKEE 79
             A LG+  EE
Sbjct:    79 AALGMRSEE 87

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:504955441 AT4G16141 [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
 Identities = 42/70 (60%), Positives = 54/70 (77%)

Query:    10 ESDEVNSSGSKRLDGVSSDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKR 69
             +S +V++ G+    G   D    KKTC DCGT++TPLWRGGPAGPKSLCNACGI+SRKKR
Sbjct:    17 DSSDVDN-GNCSSSGSGGDT---KKTCVDCGTSRTPLWRGGPAGPKSLCNACGIKSRKKR 72

Query:    70 RAILGITKEE 79
             +A LGI +++
Sbjct:    73 QAALGIRQDD 82

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2120845 CGA1 "cytokinin-responsive gata factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
 Identities = 39/72 (54%), Positives = 50/72 (69%)

Query:     3 DPSDKGFESDEV-NSSGSKRLDGVSSDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNAC 61
             D S +   +D+  N S S+R +G ++D   + + C+DC TTKTPLWR GP GPKSLCNAC
Sbjct:   169 DSSKQHTNNDQSSNLSNSERQNGYNND--CVIRICSDCNTTKTPLWRSGPRGPKSLCNAC 226

Query:    62 GIRSRKKRRAIL 73
             GIR RK RRA +
Sbjct:   227 GIRQRKARRAAM 238

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IEP

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0010187 "negative regulation of seed germination" evidence=IEP

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

TAIR|locus:2148558 GATA23 "GATA transcription factor 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
 Identities = 32/49 (65%), Positives = 40/49 (81%)

Query:    28 DENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRA-ILGI 75
             +E    + C++C TTKTP+WRGGP GPKSLCNACGIR RK+RR+ +LGI
Sbjct:    20 EEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGI 68

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0048527 "lateral root development" evidence=IMP

TAIR|locus:2170277 GNC "GATA, nitrate-inducible, carbon metabolism-involved" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
 Identities = 32/47 (68%), Positives = 37/47 (78%)

Query:    27 SDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAIL 73
             S+ N + + C+DC TTKTPLWR GP GPKSLCNACGIR RK RRA +
Sbjct:   223 SNNNGVIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRAAM 269

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010255 "glucose mediated signaling pathway" evidence=IMP

GO:0051171 "regulation of nitrogen compound metabolic process" evidence=IEP;IMP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IEP

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0010187 "negative regulation of seed germination" evidence=IEP

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2115195 GATA19 "GATA transcription factor 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 31/54 (57%), Positives = 38/54 (70%)

Query:    17 SGSKRLDGVSSDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70
             +GSK+  G     N + + CA+C TT TPLWR GP GPKSLCNACGIR +K+ R
Sbjct:    59 NGSKK-GGGGGGHNLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 111

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2062095 GATA20 "GATA transcription factor 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 27/41 (65%), Positives = 32/41 (78%)

Query:    30 NSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70
             +S+ + CA C TT TPLWR GP GPKSLCNACGIR +K+ R
Sbjct:    88 HSLPRRCASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 128

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2077932 MNP "MONOPOLE" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 8.7e-12, P = 8.7e-12
 Identities = 30/61 (49%), Positives = 37/61 (60%)

Query:    16 SSGSKRLDGVSSDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGI 75
             S G     G    ++ + + CA+C TT TPLWR GP GPKSLCNACGIR +K+ R     
Sbjct:   134 SGGGGGGGGGGGGDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRTTAA 193

Query:    76 T 76
             T
Sbjct:   194 T 194

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IEP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009909 "regulation of flower development" evidence=IGI

GO:0009790 "embryo development" evidence=IMP

GO:0048446 "petal morphogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LG10	GAT15_ARATH	No assigned EC number	0.5625	0.9251	0.9127	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.X.3599.1 hypothetical protein (118 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	147
pfam00320	36	pfam00320, GATA, GATA zinc finger	3e-16
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	4e-14
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	3e-12

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 66.9 bits (164), Expect = 3e-16
 Identities = 22/35 (62%), Positives = 27/35 (77%)

Query: 36 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70
          C++CGTTKTPLWR GP G ++LCNACG+  RK   
Sbjct: 1  CSNCGTTKTPLWRRGPDGNRTLCNACGLYYRKHGL 35

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 62.1 bits (151), Expect = 4e-14
 Identities = 21/37 (56%), Positives = 30/37 (81%)

Query: 34 KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70
          ++C++CGTT+TPLWR GP+G K+LCNACG+  +K   
Sbjct: 4  RSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGG 40

Length = 52

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 57.4 bits (139), Expect = 3e-12
 Identities = 20/36 (55%), Positives = 26/36 (72%)

Query: 35 TCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70
           C++CGTT TPLWR GP+G  +LCNACG+  +K   
Sbjct: 1  ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGV 36

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.58
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.58
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.57
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	98.87
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.71
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	95.83
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	94.15
PF14803	34	Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.	84.1
PF01412	116	ArfGap: Putative GTPase activating protein for Arf	81.38

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.58  E-value=3.7e-16  Score=95.35  Aligned_cols=35  Identities=54%  Similarity=1.272  Sum_probs=28.3

Q ss_pred             cccCCCCCCCccccCCCCCcccchhHHHHHHhhcc
Q 032112           36 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR   70 (147)
Q Consensus        36 C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~   70 (147)
                      |+||+|++||+||++|.|+.+|||+||+||+++++
T Consensus         1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~~   35 (36)
T PF00320_consen    1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYGK   35 (36)
T ss_dssp             -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHSS
T ss_pred             CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhCC
Confidence            89999999999999999987799999999998865

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.58  E-value=8.7e-16  Score=101.47  Aligned_cols=38  Identities=53%  Similarity=1.142  Sum_probs=34.6

Q ss_pred             ccccCCCCCCCccccCCCCCcccchhHHHHHHhhcccc
Q 032112           35 TCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAI   72 (147)
Q Consensus        35 ~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~~~   72 (147)
                      .|+||++++||+||+||.|..+|||||||||++++..+
T Consensus         1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~~~r   38 (54)
T cd00202           1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGVMR   38 (54)
T ss_pred             CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcCCCC
Confidence            59999999999999999887899999999999887544

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.57  E-value=1.3e-15  Score=99.71  Aligned_cols=40  Identities=53%  Similarity=1.168  Sum_probs=36.9

Q ss_pred             CCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhccc
Q 032112           32 IKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRA   71 (147)
Q Consensus        32 ~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~~   71 (147)
                      ..+.|+||++++||+||++|.|+.+|||||||||++++..
T Consensus         2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~   41 (52)
T smart00401        2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGL   41 (52)
T ss_pred             CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCCC
Confidence            4678999999999999999999889999999999998764

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=98.87  E-value=7.2e-10  Score=85.93  Aligned_cols=37  Identities=68%  Similarity=1.409  Sum_probs=35.1

Q ss_pred             CCccccCCCCCCCccccCCCCCcccchhHHHHHHhhc
Q 032112           33 KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKR   69 (147)
Q Consensus        33 ~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~   69 (147)
                      ...|++|+++.||+||+++.|++.+|||||++++++.
T Consensus       199 ~~~c~~~~~~~t~~~r~~~~g~~~~cnacgl~~k~~~  235 (340)
T KOG1601|consen  199 LRQCSNCGTTKTPLWRRGPEGPKSLCNACGLRYKKGG  235 (340)
T ss_pred             CcccCCCCCCCCcceecCCCCCccccccchhhhhhcC
Confidence            5899999999999999999998899999999999886

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.71  E-value=4.3e-09  Score=95.48  Aligned_cols=56  Identities=36%  Similarity=0.776  Sum_probs=42.5

Q ss_pred             CCCCCCCCccccCCCCCCCccccCCC-----CCcccchhHHHHHHhhcccc--cccCchhhhhc
Q 032112           27 SDENSIKKTCADCGTTKTPLWRGGPA-----GPKSLCNACGIRSRKKRRAI--LGITKEEKKSK   83 (147)
Q Consensus        27 ~~~~~~~~~C~nCgtt~Tp~WR~gp~-----G~~~LCNaCGl~~~k~~~~~--~~~~~~~~k~k   83 (147)
                      +........|.||.|+.||+|||++.     |. +||||||||++-++..+  ..++...++++
T Consensus       152 ~~~s~~~~vc~Nc~t~stPlwrR~~~~~s~~~n-~lcnaCgl~~klhg~~r~P~t~ks~~~ks~  214 (498)
T COG5641         152 SDNSNQPHVCSNCKTTSTPLWRRASSESSLPGN-NLCNACGLYLKLHGSPRAPISLKSDSIKSR  214 (498)
T ss_pred             cccccccchhccccccCCccccccccccccCCc-cccccccccccccCCcCCCccccccccccc
Confidence            33344455999999999999999999     64 99999999999888655  33444444443

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=95.83  E-value=0.0046  Score=56.73  Aligned_cols=92  Identities=22%  Similarity=0.266  Sum_probs=63.2

Q ss_pred             CCccccCCC-CCCCccccCCCCCcccchhHHHHHHhhcccccccCchhhhhc-----ccCCCCCC-----CCCCCCCCCc
Q 032112           33 KKTCADCGT-TKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGITKEEKKSK-----RGNSNSSS-----NSSSNKLGDS  101 (147)
Q Consensus        33 ~~~C~nCgt-t~Tp~WR~gp~G~~~LCNaCGl~~~k~~~~~~~~~~~~~k~k-----~~~~~~~~-----~~~~~~~~~~  101 (147)
                      ...|.+|.+ +.||.||+...-.-++||+||++.+..+..+..+.+...-.+     +-++....     ........++
T Consensus       297 ~~~~s~~~~~~~tp~~~r~~~~~s~~~n~~~~~~~~~~~~~p~~pk~d~n~~~~~~~~~N~s~~~~~k~~~~~~~~~s~~  376 (498)
T COG5641         297 DKKRSTLTTSTATPLWRRTSDKSSFSCNASGSALKPPGSKRPLLPKPDPNSKRSNATCMNCSSTPTNKILSPPTTSNSPG  376 (498)
T ss_pred             hcCcccccccccCcccccccccccccccccccccCCcccccccCCCCChhhhhhhheecccccccccccccCcccccCcc
Confidence            567888887 789999888765569999999999988877765554433332     11221111     1122334578


Q ss_pred             chhhhhccCcchhhhhhhHHHHh
Q 032112          102 LKQRLYALGREVLMQRSSVEKQR  124 (147)
Q Consensus       102 l~~kl~~v~r~~~mkk~~i~~rk  124 (147)
                      .+-+|++..+++.|++..|-+||
T Consensus       377 ~~~~l~N~t~~~~~~~~~~~~~r  399 (498)
T COG5641         377 AQVKLPNQTRSTGATKKKITRRR  399 (498)
T ss_pred             chhhccCcccccccccccccccc
Confidence            89999999999999887765444

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=94.15  E-value=0.19  Score=46.74  Aligned_cols=39  Identities=31%  Similarity=0.580  Sum_probs=31.8

Q ss_pred             CCCCccccCCCCCCCccc-cCCCC-CcccchhHHHHHHhhc
Q 032112           31 SIKKTCADCGTTKTPLWR-GGPAG-PKSLCNACGIRSRKKR   69 (147)
Q Consensus        31 ~~~~~C~nCgtt~Tp~WR-~gp~G-~~~LCNaCGl~~~k~~   69 (147)
                      ..++.|-+|+|+++-+|= .||.+ ...||-.|=+||+|.+
T Consensus       384 ~~g~~CEsC~ttqs~qWYsWGppnmqcrLCasCWiyWKKyg  424 (693)
T KOG3554|consen  384 QDGRACESCYTTQSLQWYSWGPPNMQCRLCASCWIYWKKYG  424 (693)
T ss_pred             CCCCcccccccccccceeccCCCCccchhhHHHHHHHHHhc
Confidence            347899999999999993 45544 4579999999999876

>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C

Probab=84.10  E-value=0.29  Score=29.56  Aligned_cols=30  Identities=30%  Similarity=0.674  Sum_probs=15.2

Q ss_pred             CccccCCCCCCCccccCCCCCcccchhHHH
Q 032112           34 KTCADCGTTKTPLWRGGPAGPKSLCNACGI   63 (147)
Q Consensus        34 ~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl   63 (147)
                      +.|.+||+.-+..-=.|.+-...+|.+||.
T Consensus         1 kfC~~CG~~l~~~ip~gd~r~R~vC~~Cg~   30 (34)
T PF14803_consen    1 KFCPQCGGPLERRIPEGDDRERLVCPACGF   30 (34)
T ss_dssp             -B-TTT--B-EEE--TT-SS-EEEETTTTE
T ss_pred             CccccccChhhhhcCCCCCccceECCCCCC
Confidence            469999987433333556666789999983

>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []

Probab=81.38  E-value=1.3  Score=32.59  Aligned_cols=37  Identities=35%  Similarity=0.646  Sum_probs=26.4

Q ss_pred             CCCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhc
Q 032112           31 SIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKR   69 (147)
Q Consensus        31 ~~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~   69 (147)
                      ..++.|++|++.. |.|-.-..| ..||-.|.-.++..+
T Consensus        11 ~~N~~CaDCg~~~-p~w~s~~~G-iflC~~Cag~HR~lg   47 (116)
T PF01412_consen   11 PGNKVCADCGAPN-PTWASLNYG-IFLCLECAGIHRSLG   47 (116)
T ss_dssp             TTCTB-TTT-SBS---EEETTTT-EEE-HHHHHHHHHHT
T ss_pred             cCcCcCCCCCCCC-CCEEEeecC-hhhhHHHHHHHHHhc
Confidence            4568999999655 599999999 599999988888766

The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	147
2vus_I	43	Crystal Structure Of Unliganded Nmra-Area Zinc Fing		7e-05
4gat_A	66	Solution Nmr Structure Of The Wild Type Dna Binding		3e-04
7gat_A	66	Solution Nmr Structure Of The L22v Mutant Dna Bindi		8e-04

>pdb|2VUS|I Chain I, Crystal Structure Of Unliganded Nmra-Area Zinc Finger Complex Length = 43

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 35 TCADCGTTKTPLWRGGPAGPKSLCNACGI 63
          TC +C T  TPLWR  P G + LCNACG+
Sbjct: 3  TCTNCFTQTTPLWRRNPEG-QPLCNACGL 30

>pdb|4GAT|A Chain A, Solution Nmr Structure Of The Wild Type Dna Binding Domain Of Area Complexed To A 13bp Dna Containing A Cgata Site, Regularized Mean Structure Length = 66

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 35 TCADCGTTKTPLWRGGPAGPKSLCNACGI 63
          TC +C T  TPLWR  P G + LCNACG+
Sbjct: 11 TCTNCFTQTTPLWRRNPEG-QPLCNACGL 38

>pdb|7GAT|A Chain A, Solution Nmr Structure Of The L22v Mutant Dna Binding Domain Of Area Complexed To A 13 Bp Dna Containing A Tgata Site, 34 Structures Length = 66

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 35 TCADCGTTKTPLWRGGPAGPKSLCNACGI 63
          TC +C T  TP+WR  P G + LCNACG+
Sbjct: 11 TCTNCFTQTTPVWRRNPEG-QPLCNACGL 38

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	147
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	1e-16
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	5e-14
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	2e-12
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	1e-09
3dfx_A	63	Trans-acting T-cell-specific transcription factor	1e-09

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 68.8 bits (168), Expect = 1e-16
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 27 SDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK--KRRAILGITKEEKKSKR 84
          S  N     C++C  T+T  WR   +     CNAC I  RK  K R +  + K +K+  +
Sbjct: 2  SHMNKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNKYQKRKLK 61

Query: 85 GNSNSSSNS 93
              +  +S
Sbjct: 62 VQETNGVDS 70

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 61.3 bits (149), Expect = 5e-14
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 31 SIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70
          S  + C +CG T TPLWR    G   LCNACG+  +   +
Sbjct: 2  SEARECVNCGATATPLWRRDRTG-HYLCNACGLYHKMNGQ 40

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 57.1 bits (138), Expect = 2e-12
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 34 KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70
           TC +C T  TPLWR  P G + LCNACG+  +    
Sbjct: 2  TTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHGV 37

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 50.8 bits (121), Expect = 1e-09
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 25 VSSDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRA-ILGITKEEKKSK 83
          + + E +   TC +C T  TPLWR  P G + LCNACG+  +       L +  +  K +
Sbjct: 1  MKNGEQNGPTTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLSLKTDVIKKR 59

Query: 84 RGNSNSS 90
            NS +S
Sbjct: 60 NRNSANS 66

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 50.0 bits (119), Expect = 1e-09
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 27 SDENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKR--RAILGITKEEKKSKR 84
          S       +CA+C TT T LWR    G   +CNACG+  +     R +    +  +   R
Sbjct: 1  SAARRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNR 59

Query: 85 GNSN 88
            S+
Sbjct: 60 KMSS 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.86
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.85
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.81
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.76
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.72
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.7
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.63
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	87.09

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.86  E-value=4.5e-23  Score=153.35  Aligned_cols=97  Identities=25%  Similarity=0.545  Sum_probs=67.9

Q ss_pred             CCCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhcccccccCchhhhh-------cccCCCCCCCC--CCCC----
Q 032112           31 SIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGITKEEKKS-------KRGNSNSSSNS--SSNK----   97 (147)
Q Consensus        31 ~~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~~~~~~~~~~~k~-------k~~~~~~~~~~--~~~~----   97 (147)
                      ...++|+||+|++||+||+|++| .+|||||||||+.+++.++.+++..+..       .+.++....++  +...    
T Consensus         3 ~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp~WRr~~~g~~   81 (115)
T 4hc9_A            3 HMGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDP   81 (115)
T ss_dssp             ---CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCSSCEECTTSCE
T ss_pred             CCCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcceeEECCCCCC
Confidence            45789999999999999999999 5999999999999987775443322111       12233332221  2121    


Q ss_pred             --CCCcchhhhhccCcchhhhhhhHHHHhhhcC
Q 032112           98 --LGDSLKQRLYALGREVLMQRSSVEKQRKTLG  128 (147)
Q Consensus        98 --~~~~l~~kl~~v~r~~~mkk~~i~~rkrkl~  128 (147)
                        ..||||+++|++.||+.|+++.|++|+||++
T Consensus        82 lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~~s  114 (115)
T 4hc9_A           82 VCNACGLYYKLHNINRPLTMKKEGIQTRNRKMS  114 (115)
T ss_dssp             ECHHHHHHHHHHSSCCCGGGCCSSCCCCC----
T ss_pred             cchHHHHHHHHhCCCCCccccccchhhcccccc
Confidence              2269999999999999999999999999986

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.85  E-value=1.9e-22  Score=136.50  Aligned_cols=60  Identities=28%  Similarity=0.722  Sum_probs=47.3

Q ss_pred             CCCCCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhcccccccCchhhhhcccCCCCCCCCCCCCCCCcchhhhhc
Q 032112           29 ENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGITKEEKKSKRGNSNSSSNSSSNKLGDSLKQRLYA  108 (147)
Q Consensus        29 ~~~~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~l~~kl~~  108 (147)
                      .......|+||+|++||+||+||+|+ +|||||||||+++                                       +
T Consensus         3 ~~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~---------------------------------------~   42 (63)
T 3dfx_A            3 ARRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLH---------------------------------------N   42 (63)
T ss_dssp             CCCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHH---------------------------------------S
T ss_pred             CCCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHc---------------------------------------C
Confidence            34557789999999999999999997 9999999999955                                       4


Q ss_pred             cCcchhhhhhhHHHHhhhcC
Q 032112          109 LGREVLMQRSSVEKQRKTLG  128 (147)
Q Consensus       109 v~r~~~mkk~~i~~rkrkl~  128 (147)
                      +.||+.|++++|++|+||.+
T Consensus        43 ~~RP~~~~~~~i~~R~Rk~~   62 (63)
T 3dfx_A           43 INRPLTMKKEGIQTRNRKMS   62 (63)
T ss_dssp             SCCCGGGCCSSCCCCC----
T ss_pred             CCCCcCcCCCccccccCCCC
Confidence            56777777777777777653

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.81  E-value=2.6e-21  Score=131.89  Aligned_cols=55  Identities=35%  Similarity=0.689  Sum_probs=42.1

Q ss_pred             CCCCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhcccc-cccCchhhhhccc
Q 032112           30 NSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAI-LGITKEEKKSKRG   85 (147)
Q Consensus        30 ~~~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~~~-~~~~~~~~k~k~~   85 (147)
                      ++..+.|+||+|++||+||+||+|+ +|||||||||+++++.+ +.+++..+++++|
T Consensus         6 ~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R   61 (66)
T 4gat_A            6 QNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRNR   61 (66)
T ss_dssp             SSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCCC
T ss_pred             CCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhcccccccccc
Confidence            4567899999999999999999997 99999999999665433 2344444444433

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.76  E-value=5.1e-19  Score=122.15  Aligned_cols=42  Identities=33%  Similarity=0.529  Sum_probs=31.4

Q ss_pred             CCCCCCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhc
Q 032112           28 DENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKR   69 (147)
Q Consensus        28 ~~~~~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~   69 (147)
                      .+......|+||+|++||+||+|+.+..+|||||||||++++
T Consensus         3 ~~~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~   44 (71)
T 2kae_A            3 HMNKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYN   44 (71)
T ss_dssp             -----CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHH
T ss_pred             CCCCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhC
Confidence            345667899999999999999954433489999999999553

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.72  E-value=4.2e-18  Score=108.77  Aligned_cols=41  Identities=39%  Similarity=0.875  Sum_probs=37.0

Q ss_pred             CCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhccccc
Q 032112           32 IKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAIL   73 (147)
Q Consensus        32 ~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~~~~   73 (147)
                      ..+.|+||+|++||+||+||+|+ +|||||||||+++++.++
T Consensus         3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP   43 (46)
T 1gnf_A            3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQNRP   43 (46)
T ss_dssp             CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSCCC
T ss_pred             CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCCCC
Confidence            56789999999999999999997 999999999998876553

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.70  E-value=5.2e-18  Score=106.91  Aligned_cols=38  Identities=45%  Similarity=0.927  Sum_probs=34.7

Q ss_pred             CccccCCCCCCCccccCCCCCcccchhHHHHHHhhcccc
Q 032112           34 KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAI   72 (147)
Q Consensus        34 ~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~~~   72 (147)
                      +.|+||+|++||+||+||+|+ +|||||||||+++++.+
T Consensus         2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~R   39 (43)
T 2vut_I            2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVVR   39 (43)
T ss_dssp             CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSCC
T ss_pred             CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCCC
Confidence            579999999999999999997 99999999999887644

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.63  E-value=2.8e-16  Score=116.69  Aligned_cols=59  Identities=31%  Similarity=0.625  Sum_probs=48.3

Q ss_pred             CCCCCCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhcccc-cccCchhhhhcccCC
Q 032112           28 DENSIKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAI-LGITKEEKKSKRGNS   87 (147)
Q Consensus        28 ~~~~~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~~~-~~~~~~~~k~k~~~~   87 (147)
                      ........|+||+|++||+||+||+| .+|||||||||++++..+ +.|++..+++++++.
T Consensus        54 ~~~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~~  113 (115)
T 4hc9_A           54 AARRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKM  113 (115)
T ss_dssp             CCCCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC---
T ss_pred             ccccccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhccccc
Confidence            33455789999999999999999999 699999999999988655 678888888877654

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=87.09  E-value=0.098  Score=32.21  Aligned_cols=17  Identities=18%  Similarity=0.139  Sum_probs=15.4

Q ss_pred             CCcchhhhhccCcchhh
Q 032112           99 GDSLKQRLYALGREVLM  115 (147)
Q Consensus        99 ~~~l~~kl~~v~r~~~m  115 (147)
                      .||||+++|++.||+.|
T Consensus        27 aCGl~~k~~~~~RP~~l   43 (43)
T 2vut_I           27 ACGLFLKLHGVVRPLSL   43 (43)
T ss_dssp             HHHHHHHHHSSCCCCCC
T ss_pred             HHHHHHHHhCCCCCCCC
Confidence            37999999999999976

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	147
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	3e-13
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	4e-12
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	9e-08

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (141), Expect = 3e-13
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 34 KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70
          + C +CG T TPLWR    G   LCNACG+  +   +
Sbjct: 3  RECVNCGATATPLWRRDRTG-HYLCNACGLYHKMNGQ 38

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 54.8 bits (132), Expect = 4e-12
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 35 TCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70
          TC +C T  TPLWR  P G + LCNACG+  +    
Sbjct: 2  TCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHGV 36

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.6 bits (105), Expect = 9e-08
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 36 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 70
          C++C T+ T LWR  P G   +CNACG+  +  + 
Sbjct: 7  CSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQV 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	147
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.81
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.79
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.75
d1neea2	37	Zinc-binding domain of translation initiation fact	87.97
d1dcqa2	122	Pyk2-associated protein beta ARF-GAP domain {Mouse	82.85
d1k81a_	36	Zinc-binding domain of translation initiation fact	82.32

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.81  E-value=7.4e-22  Score=133.10  Aligned_cols=52  Identities=31%  Similarity=0.741  Sum_probs=39.0

Q ss_pred             CCccccCCCCCCCccccCCCCCcccchhHHHHHHhhcccc-cccCchhhhhccc
Q 032112           33 KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAI-LGITKEEKKSKRG   85 (147)
Q Consensus        33 ~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~~~-~~~~~~~~k~k~~   85 (147)
                      ...|+||+|++||+||+||.| .+|||||||||++++..+ +.+.++.++.+++
T Consensus         4 g~~C~nCgt~~Tp~WRr~~~G-~~lCNACGl~~~~~~~~RP~~~~~~~i~~r~r   56 (66)
T d3gata_           4 GTVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQVNRPLTMRKDGIQTRNR   56 (66)
T ss_dssp             TCCCTTTCCCCCSSEEECTTS-CEEEHHHHHHHHHHCSCCCGGGCCSSCCCCSC
T ss_pred             CCCCCCCCCCCCcccccCCCC-CcccchhHHHHHHhCCcCCccccccccccccC
Confidence            467999999999999999999 599999999999655332 2344444444333

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.79  E-value=1.4e-20  Score=116.72  Aligned_cols=36  Identities=47%  Similarity=1.016  Sum_probs=32.4

Q ss_pred             ccccCCCCCCCccccCCCCCcccchhHHHHHHhhccc
Q 032112           35 TCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRA   71 (147)
Q Consensus        35 ~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~~   71 (147)
                      .|+||+|++||+||+||.| ++|||||||||+++++.
T Consensus         2 ~C~nC~tt~Tp~WRr~~~G-~~lCNACGl~~k~~g~~   37 (42)
T d2vuti1           2 TCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHGVV   37 (42)
T ss_dssp             CCSSSCCCCCSCCEECTTS-CEECHHHHHHHHHHSSC
T ss_pred             cCCCCCCCCCccceeCCCC-CCchhhhhHHHHHcCCC
Confidence            5999999999999999999 59999999999866543

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=1.6e-19  Score=110.32  Aligned_cols=38  Identities=42%  Similarity=1.003  Sum_probs=34.8

Q ss_pred             CCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhcc
Q 032112           32 IKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR   70 (147)
Q Consensus        32 ~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~   70 (147)
                      +.+.|+||++++||+||+||.| ++|||||||||+.+++
T Consensus         1 e~r~C~~Cgtt~Tp~WR~gp~G-~~LCNACGl~~r~~G~   38 (39)
T d1y0ja1           1 EARECVNCGATATPLWRRDRTG-HYLCNACGLYHKMNGQ   38 (39)
T ss_dssp             CCCCCSSSCCCCCSCCEECTTS-CEECSSHHHHHHHSCC
T ss_pred             CcCCCCCCCCCCCcccccCCCC-CEeeHHhHHHHHHhCC
Confidence            3678999999999999999999 4899999999998865

>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Small proteins
fold: Zinc-binding domain of translation initiation factor 2 beta
superfamily: Zinc-binding domain of translation initiation factor 2 beta
family: Zinc-binding domain of translation initiation factor 2 beta
domain: Zinc-binding domain of translation initiation factor 2 beta
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.97  E-value=0.057  Score=31.11  Aligned_cols=28  Identities=32%  Similarity=0.746  Sum_probs=23.2

Q ss_pred             ccccCCCCCCCccccCCCCCcccchhHHH
Q 032112           35 TCADCGTTKTPLWRGGPAGPKSLCNACGI   63 (147)
Q Consensus        35 ~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl   63 (147)
                      .|..|+..+|-+-+.+..- -.-|+|||-
T Consensus         3 ~C~~C~spDT~l~ke~R~~-~l~C~aCGa   30 (37)
T d1neea2           3 ICHECNRPDTRIIREGRIS-LLKCEACGA   30 (37)
T ss_dssp             HHTCCSSCSSCCEEETTTT-EEECSTTSC
T ss_pred             ECCCCCCCCCEEEEcCCEE-EEEeccCCC
Confidence            5999999999999987655 367999984

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.85  E-value=0.4  Score=33.10  Aligned_cols=37  Identities=27%  Similarity=0.570  Sum_probs=31.1

Q ss_pred             CCCccccCCCCCCCccccCCCCCcccchhHHHHHHhhcc
Q 032112           32 IKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR   70 (147)
Q Consensus        32 ~~~~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl~~~k~~~   70 (147)
                      .+..|++|++. .|.|-.-..| ..||-.|.-.+|..+.
T Consensus        14 ~N~~CaDC~~~-~p~w~s~n~G-vfvC~~CsgiHR~lg~   50 (122)
T d1dcqa2          14 GNDVCCDCGAP-DPTWLSTNLG-ILTCIECSGIHRELGV   50 (122)
T ss_dssp             TTTBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred             CCCccCCCCCC-CCCeEEecCC-EEEchhhhHHHhcCCC
Confidence            46799999977 5899999999 5999999888877653

>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Small proteins
fold: Zinc-binding domain of translation initiation factor 2 beta
superfamily: Zinc-binding domain of translation initiation factor 2 beta
family: Zinc-binding domain of translation initiation factor 2 beta
domain: Zinc-binding domain of translation initiation factor 2 beta
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=82.32  E-value=0.061  Score=30.82  Aligned_cols=28  Identities=32%  Similarity=0.758  Sum_probs=22.9

Q ss_pred             ccccCCCCCCCccccCCCCCcccchhHHH
Q 032112           35 TCADCGTTKTPLWRGGPAGPKSLCNACGI   63 (147)
Q Consensus        35 ~C~nCgtt~Tp~WR~gp~G~~~LCNaCGl   63 (147)
                      .|..|+..+|-+-+.+..- -.-|+|||-
T Consensus         2 ~C~~C~spDT~l~ke~R~~-~l~C~aCGa   29 (36)
T d1k81a_           2 ICRECGKPDTKIIKEGRVH-LLKCMACGA   29 (36)
T ss_dssp             CCSSSCSCEEEEEEETTEE-EEEEETTTE
T ss_pred             CCCCCCCCCCEEEEcCCEE-EEEeccCCC
Confidence            5999999999999986554 367999984