Citrus Sinensis ID: 032132

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEEA
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEccccccccccEEEccccccHHHHHHHHHHHHHcccccccccccccccccEEEEEEccccEEcccccccEEcccEEEEEEccccccccccEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEcccccccccEEEcccccccHHHHHHHHHHHHHHcccccccccHHHccccEEEEEEEEccccccccccEEEcccEEEEEEEccccccEEEccccccHHHHHcc
Coil and Loop (DISEMBL)
MVSANREMAVYCFDTLVAhynsedapppafdegqhplFVTWKKvvnggeprlrgcigTLEARCLINGFKDYALtsalkdrrfppiqarelpslecTVSILTDFETannyldwevgthgliieftdpeystrrsatylpevaaheea
Flexible Loop (DISEMBL)
MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRrfppiqarelpsleCTVSILTDFETANNYLDWEVGTHGLIIEftdpeystrrSATYLPEVAAHEEA
Low Complexity Region (SEG)
MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEEA
Disordered region (IsUnstruct)
*******MAVYCFDTLVAHYNS********DEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEY******************
Disordered Region (DISOPRED)
**SANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAH***
Disordered Region (DISEMBL)
MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEEA
Disordered Region (DISPRO)
***ANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEE*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEEA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	146	2.2.26 [Sep-21-2011]
Q9ZVJ2	214	Uncharacterized protein A	yes	no	0.986	0.672	0.826	3e-70
Q5RDQ3	310	AMMECR1-like protein OS=P	yes	no	0.924	0.435	0.542	1e-35
Q6DCA0	310	AMMECR1-like protein OS=H	yes	no	0.924	0.435	0.542	1e-35
Q8JZZ6	310	AMMECR1-like protein OS=M	yes	no	0.924	0.435	0.542	1e-35
Q5RAS7	333	AMME syndrome candidate g	no	no	0.945	0.414	0.531	2e-34
Q9Y4X0	333	AMME syndrome candidate g	no	no	0.945	0.414	0.531	2e-34
Q9JHT5	344	AMME syndrome candidate g	no	no	0.945	0.401	0.531	2e-34
Q9VCF0	243	Uncharacterized protein C	yes	no	0.917	0.551	0.496	1e-31
Q22004	200	Uncharacterized protein R	yes	no	0.952	0.695	0.479	2e-30
Q9URS8	227	Uncharacterized protein K	yes	no	0.726	0.466	0.456	1e-22

>sp|Q9ZVJ2|AMERL_ARATH Uncharacterized protein At2g38710 OS=Arabidopsis thaliana GN=At2g38710 PE=2 SV=1

 Score =  263 bits (672), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 119/144 (82%), Positives = 135/144 (93%)

Query: 1   MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60
           MVSANREMAVYCFDTLV+HYN+E+ PPPAF+E  HPLFVTWKK+VNGGEPRLRGCIGTLE
Sbjct: 1   MVSANREMAVYCFDTLVSHYNNEETPPPAFEEANHPLFVTWKKIVNGGEPRLRGCIGTLE 60

Query: 61  ARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLI 120
           AR LI+GFKDYALTSAL+DRRFPPIQA+ELPSL+CTVS+LTD+E A +YLDWEVG HG+I
Sbjct: 61  ARRLISGFKDYALTSALRDRRFPPIQAKELPSLQCTVSVLTDYEDAEDYLDWEVGKHGII 120

Query: 121 IEFTDPEYSTRRSATYLPEVAAHE 144
           IEFT+PE +T+RSATYLPEV AHE
Sbjct: 121 IEFTEPETNTKRSATYLPEVPAHE 144

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RDQ3|AMERL_PONAB AMMECR1-like protein OS=Pongo abelii GN=AMMECR1L PE=2 SV=1

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/140 (54%), Positives = 93/140 (66%), Gaps = 5/140 (3%)

Query: 7   EMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLI 65
           EM  YCFD L  H Y       P F    +PLFVTWK    G + RLRGCIGT  A  L 
Sbjct: 107 EMCCYCFDVLYCHLYGFPQPRLPRFTNDPYPLFVTWK---TGRDKRLRGCIGTFSAMNLH 163

Query: 66  NGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTD 125
           +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE A++YLDWEVG HG+ IEF +
Sbjct: 164 SGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEFIN 223

Query: 126 PEYSTRRSATYLPEVAAHEE 145
            E   +R+ATYLPEVA  ++
Sbjct: 224 -EKGVKRTATYLPEVAKEQD 242

Pongo abelii (taxid: 9601)

>sp|Q6DCA0|AMERL_HUMAN AMMECR1-like protein OS=Homo sapiens GN=AMMECR1L PE=1 SV=1

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/140 (54%), Positives = 93/140 (66%), Gaps = 5/140 (3%)

Query: 7   EMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLI 65
           EM  YCFD L  H Y       P F    +PLFVTWK    G + RLRGCIGT  A  L 
Sbjct: 107 EMCCYCFDVLYCHLYGFPQPRLPRFTNDPYPLFVTWK---TGRDKRLRGCIGTFSAMNLH 163

Query: 66  NGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTD 125
           +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE A++YLDWEVG HG+ IEF +
Sbjct: 164 SGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEFIN 223

Query: 126 PEYSTRRSATYLPEVAAHEE 145
            E   +R+ATYLPEVA  ++
Sbjct: 224 -EKGVKRTATYLPEVAKEQD 242

Homo sapiens (taxid: 9606)

>sp|Q8JZZ6|AMERL_MOUSE AMMECR1-like protein OS=Mus musculus GN=Ammecr1l PE=2 SV=1

 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/140 (54%), Positives = 93/140 (66%), Gaps = 5/140 (3%)

Query: 7   EMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLI 65
           EM  YCFD L  H Y       P F    +PLFVTWK    G + RLRGCIGT  A  L 
Sbjct: 107 EMCCYCFDVLYCHLYGFPQPRLPRFTNDPYPLFVTWK---TGRDKRLRGCIGTFSAMNLH 163

Query: 66  NGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTD 125
           +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE A++YLDWEVG HG+ IEF +
Sbjct: 164 SGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEFIN 223

Query: 126 PEYSTRRSATYLPEVAAHEE 145
            E   +R+ATYLPEVA  ++
Sbjct: 224 -EKGIKRTATYLPEVAKEQD 242

Mus musculus (taxid: 10090)

>sp|Q5RAS7|AMMR1_PONAB AMME syndrome candidate gene 1 protein homolog OS=Pongo abelii GN=AMMECR1 PE=2 SV=1

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/145 (53%), Positives = 96/145 (66%), Gaps = 7/145 (4%)

Query: 1   MVSANREMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTL 59
           +VSA  EM  +CFD L  H Y  +    P F    +PLFVTWK    G + RLRGCIGT 
Sbjct: 125 VVSA--EMCCFCFDVLYCHLYGYQQPRTPRFTNEPYPLFVTWKI---GRDKRLRGCIGTF 179

Query: 60  EARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGL 119
            A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE   +YLDWEVG HG+
Sbjct: 180 SAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGI 239

Query: 120 IIEFTDPEYSTRRSATYLPEVAAHE 144
            IEF + E  ++R+ATYLPEVA  +
Sbjct: 240 RIEFIN-EKGSKRTATYLPEVAKEQ 263

Pongo abelii (taxid: 9601)

>sp|Q9Y4X0|AMMR1_HUMAN AMME syndrome candidate gene 1 protein OS=Homo sapiens GN=AMMECR1 PE=2 SV=1

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/145 (53%), Positives = 96/145 (66%), Gaps = 7/145 (4%)

Query: 1   MVSANREMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTL 59
           +VSA  EM  +CFD L  H Y  +    P F    +PLFVTWK    G + RLRGCIGT 
Sbjct: 125 VVSA--EMCCFCFDVLYCHLYGYQQPRTPRFTNEPYPLFVTWKI---GRDKRLRGCIGTF 179

Query: 60  EARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGL 119
            A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE   +YLDWEVG HG+
Sbjct: 180 SAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGI 239

Query: 120 IIEFTDPEYSTRRSATYLPEVAAHE 144
            IEF + E  ++R+ATYLPEVA  +
Sbjct: 240 RIEFIN-EKGSKRTATYLPEVAKEQ 263

Homo sapiens (taxid: 9606)

>sp|Q9JHT5|AMMR1_MOUSE AMME syndrome candidate gene 1 protein homolog OS=Mus musculus GN=Ammecr1 PE=2 SV=1

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/145 (53%), Positives = 96/145 (66%), Gaps = 7/145 (4%)

Query: 1   MVSANREMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTL 59
           +VSA  EM  +CFD L  H Y  +    P F    +PLFVTWK    G + RLRGCIGT 
Sbjct: 136 VVSA--EMCCFCFDVLYCHLYGYQQPRTPRFTNEPYPLFVTWKI---GRDKRLRGCIGTF 190

Query: 60  EARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGL 119
            A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE   +YLDWEVG HG+
Sbjct: 191 SAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGI 250

Query: 120 IIEFTDPEYSTRRSATYLPEVAAHE 144
            IEF + E  ++R+ATYLPEVA  +
Sbjct: 251 RIEFIN-EKGSKRTATYLPEVAKEQ 274

Mus musculus (taxid: 10090)

>sp|Q9VCF0|Y5902_DROME Uncharacterized protein CG5902 OS=Drosophila melanogaster GN=CG5902 PE=2 SV=1

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/139 (49%), Positives = 89/139 (64%), Gaps = 5/139 (3%)

Query: 7   EMAVYCFDTLVAHYNSEDAPP-PAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLI 65
           +M ++CF+ L    N+ D P  P F    +PLFVTWK    G + RLRGCIGT  A  L 
Sbjct: 48  DMCLFCFEVLDCELNNVDGPSVPVFSNDAYPLFVTWKI---GRDKRLRGCIGTFSAMELH 104

Query: 66  NGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTD 125
           +G ++YALTSA KD RF PI   ELP L  +VSIL +FE A  +LDW++G HG+ IEF  
Sbjct: 105 HGLREYALTSAFKDSRFAPISRDELPRLTVSVSILQNFEEAQGHLDWQLGVHGIRIEFL- 163

Query: 126 PEYSTRRSATYLPEVAAHE 144
            E   +R+ATYLP+VA  +
Sbjct: 164 TERGCKRTATYLPQVATEQ 182

Drosophila melanogaster (taxid: 7227)

>sp|Q22004|AMERL_CAEEL Uncharacterized protein R166.3 OS=Caenorhabditis elegans GN=R166.3 PE=4 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/146 (47%), Positives = 87/146 (59%), Gaps = 7/146 (4%)

Query: 1   MVSANREMAVYCFDTLVAHYNSEDAPP--PAFDEGQHPLFVTWKKVVNGGEPRLRGCIGT 58
           M SAN +MAVYCFD + A  N E  PP        + PLFVTWKK   G +  LRGCIGT
Sbjct: 1   MTSANIQMAVYCFDVINAQLNREKEPPVPKEIPNVKLPLFVTWKK---GHQHDLRGCIGT 57

Query: 59  LEARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHG 118
                L  G  +YA TSA  D RF PI   E+PSL+C VS+L +FE  +N+ DW +G HG
Sbjct: 58  FSDLRLGEGLNEYAKTSAFHDSRFKPISREEVPSLQCGVSLLINFEPIHNFRDWTIGRHG 117

Query: 119 LIIEFTDPEYSTRRSATYLPEVAAHE 144
           + + F D   +  RSA +LPEVA  +
Sbjct: 118 VRMNFDDGHRN--RSAVFLPEVAQEQ 141

Caenorhabditis elegans (taxid: 6239)

>sp|Q9URS8|Y464_KLULA Uncharacterized protein KLLA0D02464g OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=KLLA0D02464g PE=4 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 73/116 (62%), Gaps = 10/116 (8%)

Query: 34  QHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELPSL 93
           + PLFVTWKK+   GE +LRGCIGT     +  G K YAL SAL+D RF PI+  EL  L
Sbjct: 48  RSPLFVTWKKL-KKGEYQLRGCIGTFSEGKIEEGLKRYALISALQDSRFTPIEREELSQL 106

Query: 94  ECTVSILTDFET---------ANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEV 140
            C  ++L+ F+T         + +  +WE+G HG+ I+F  P+ ++R SAT+LPEV
Sbjct: 107 RCGCNLLSQFKTIYSSEGTGNSGDIWNWEIGKHGIEIKFRHPKTNSRMSATFLPEV 162

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
118481647	212	unknown [Populus trichocarpa]	0.986	0.679	0.895	9e-74
224110148	212	predicted protein [Populus trichocarpa]	0.986	0.679	0.895	1e-73
359486986	211	PREDICTED: uncharacterized protein At2g3	0.986	0.682	0.888	1e-73
255549418	212	AMME syndrome candidateprotein 1 protein	0.986	0.679	0.895	8e-73
224097596	212	predicted protein [Populus trichocarpa]	0.986	0.679	0.868	2e-71
449446293	209	PREDICTED: uncharacterized protein At2g3	0.986	0.688	0.861	6e-71
296086563	204	unnamed protein product [Vitis vinifera]	0.938	0.671	0.890	7e-70
359486988	211	PREDICTED: uncharacterized protein At2g3	0.986	0.682	0.847	8e-70
358346340	211	hypothetical protein MTR_077s0041 [Medic	0.986	0.682	0.840	1e-69
358346342	149	hypothetical protein MTR_077s0041 [Medic	0.986	0.966	0.840	3e-69

>gi|118481647|gb|ABK92765.1| unknown [Populus trichocarpa]

 Score =  281 bits (718), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 129/144 (89%), Positives = 139/144 (96%)

Query: 1   MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60
           MV+ANREMAVYCFDTLVAHYNS+DAPP AFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE
Sbjct: 1   MVAANREMAVYCFDTLVAHYNSDDAPPAAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60

Query: 61  ARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLI 120
           AR L+NGF+DYALTSAL+DRRFPPIQA+ELP+LECTVSILT++ETANNYLDWEVGTHGLI
Sbjct: 61  ARYLVNGFRDYALTSALRDRRFPPIQAKELPTLECTVSILTNYETANNYLDWEVGTHGLI 120

Query: 121 IEFTDPEYSTRRSATYLPEVAAHE 144
           IEFTDP  + RRSATYLPEVAAHE
Sbjct: 121 IEFTDPNNNVRRSATYLPEVAAHE 144

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110148|ref|XP_002315428.1| predicted protein [Populus trichocarpa] gi|222864468|gb|EEF01599.1| predicted protein [Populus trichocarpa]

 Score =  280 bits (717), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 129/144 (89%), Positives = 139/144 (96%)

Query: 1   MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60
           MV+ANREMAVYCFDTLVAHYNS+DAPP AFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE
Sbjct: 1   MVAANREMAVYCFDTLVAHYNSDDAPPAAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60

Query: 61  ARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLI 120
           AR L+NGF+DYALTSAL+DRRFPPIQA+ELP+LECTVSILT++ETANNYLDWEVGTHGLI
Sbjct: 61  ARYLVNGFRDYALTSALRDRRFPPIQAKELPTLECTVSILTNYETANNYLDWEVGTHGLI 120

Query: 121 IEFTDPEYSTRRSATYLPEVAAHE 144
           IEFTDP  + RRSATYLPEVAAHE
Sbjct: 121 IEFTDPNNNVRRSATYLPEVAAHE 144

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486986|ref|XP_002268158.2| PREDICTED: uncharacterized protein At2g38710 isoform 1 [Vitis vinifera]

 Score =  280 bits (716), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 128/144 (88%), Positives = 136/144 (94%)

Query: 1   MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60
           M SANREMAVYCFDTLVAHYNS+  PPPAFDE QHPLFVTWKKVVNGGEPRLRGCIGTLE
Sbjct: 1   MASANREMAVYCFDTLVAHYNSQQPPPPAFDEAQHPLFVTWKKVVNGGEPRLRGCIGTLE 60

Query: 61  ARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLI 120
           ARCLINGFKDYALTSAL+DRRFPPIQA+ELP LECTVSILTD+ET  NYLDWE+G HG+I
Sbjct: 61  ARCLINGFKDYALTSALRDRRFPPIQAKELPYLECTVSILTDYETGLNYLDWEIGKHGII 120

Query: 121 IEFTDPEYSTRRSATYLPEVAAHE 144
           IEFTDP+Y+TRRSATYLPEVAAHE
Sbjct: 121 IEFTDPDYNTRRSATYLPEVAAHE 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549418|ref|XP_002515762.1| AMME syndrome candidateprotein 1 protein, putative [Ricinus communis] gi|223545090|gb|EEF46601.1| AMME syndrome candidateprotein 1 protein, putative [Ricinus communis]

 Score =  278 bits (710), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 129/144 (89%), Positives = 137/144 (95%)

Query: 1   MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60
           MVSANREMAVYCFDTL+AHYNSE+APPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE
Sbjct: 1   MVSANREMAVYCFDTLLAHYNSEEAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60

Query: 61  ARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLI 120
           AR LINGF+DYALTSALKDRRFPPIQ +ELPSLECTVSILTD+ETAN+YLDWE+G HGLI
Sbjct: 61  ARYLINGFRDYALTSALKDRRFPPIQPKELPSLECTVSILTDYETANSYLDWEIGKHGLI 120

Query: 121 IEFTDPEYSTRRSATYLPEVAAHE 144
           IEF D   +TRRSATYLPEVAAHE
Sbjct: 121 IEFIDSNNNTRRSATYLPEVAAHE 144

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097596|ref|XP_002311003.1| predicted protein [Populus trichocarpa] gi|222850823|gb|EEE88370.1| predicted protein [Populus trichocarpa]

 Score =  273 bits (698), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 125/144 (86%), Positives = 136/144 (94%)

Query: 1   MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60
           MV+ANREMA YCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEP LRGCIGTLE
Sbjct: 1   MVAANREMAAYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPHLRGCIGTLE 60

Query: 61  ARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLI 120
           A+ +I GF+DYALTSAL+DRRFPPIQA+ELP+LECTVSILTD+ETAN+YLDWEVG HGL+
Sbjct: 61  AQYIITGFRDYALTSALRDRRFPPIQAKELPTLECTVSILTDYETANHYLDWEVGKHGLV 120

Query: 121 IEFTDPEYSTRRSATYLPEVAAHE 144
           IEFTDP  + RRSATYLPEVAAHE
Sbjct: 121 IEFTDPNNNARRSATYLPEVAAHE 144

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446293|ref|XP_004140906.1| PREDICTED: uncharacterized protein At2g38710-like [Cucumis sativus] gi|449526983|ref|XP_004170492.1| PREDICTED: uncharacterized protein At2g38710-like [Cucumis sativus]

 Score =  271 bits (693), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 124/144 (86%), Positives = 132/144 (91%)

Query: 1   MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60
           MVSANREM VYCFDTL+AHYN E+APPPAFD GQHPLFVTWKKVVNGGEPRLRGCIGTLE
Sbjct: 1   MVSANREMVVYCFDTLLAHYNGEEAPPPAFDGGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60

Query: 61  ARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLI 120
           ARCLINGFKDYAL SAL+DRRFPPIQ +ELP LECTVSIL D+E A NYLDWEVG HG+I
Sbjct: 61  ARCLINGFKDYALNSALRDRRFPPIQPKELPYLECTVSILVDYEIATNYLDWEVGKHGII 120

Query: 121 IEFTDPEYSTRRSATYLPEVAAHE 144
           IEF DP+Y+ RRSATYLPEVAAHE
Sbjct: 121 IEFNDPDYNARRSATYLPEVAAHE 144

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086563|emb|CBI32198.3| unnamed protein product [Vitis vinifera]

 Score =  268 bits (684), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 122/137 (89%), Positives = 130/137 (94%)

Query: 8   MAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLING 67
           MAVYCFDTLVAHYNS+  PPPAFDE QHPLFVTWKKVVNGGEPRLRGCIGTLEARCLING
Sbjct: 1   MAVYCFDTLVAHYNSQQPPPPAFDEAQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLING 60

Query: 68  FKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPE 127
           FKDYALTSAL+DRRFPPIQA+ELP LECTVSILTD+ET  NYLDWE+G HG+IIEFTDP+
Sbjct: 61  FKDYALTSALRDRRFPPIQAKELPYLECTVSILTDYETGLNYLDWEIGKHGIIIEFTDPD 120

Query: 128 YSTRRSATYLPEVAAHE 144
           Y+TRRSATYLPEVAAHE
Sbjct: 121 YNTRRSATYLPEVAAHE 137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486988|ref|XP_003633501.1| PREDICTED: uncharacterized protein At2g38710 isoform 2 [Vitis vinifera]

 Score =  268 bits (684), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 122/144 (84%), Positives = 133/144 (92%)

Query: 1   MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60
           MV ANREM VYCFD LVAHYNS+ +PPPAF++   PLFVTWKKVVNGGEPRLRGCIGTLE
Sbjct: 1   MVPANREMVVYCFDILVAHYNSQKSPPPAFEDAYFPLFVTWKKVVNGGEPRLRGCIGTLE 60

Query: 61  ARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLI 120
           ARCLINGFKDYALTSAL+DRRFPPIQA+ELP LECTVSILTD+ET  NYLDWE+G HG+I
Sbjct: 61  ARCLINGFKDYALTSALRDRRFPPIQAKELPYLECTVSILTDYETGLNYLDWEIGKHGII 120

Query: 121 IEFTDPEYSTRRSATYLPEVAAHE 144
           IEFTDP+Y+TRRSATYLPEVAAHE
Sbjct: 121 IEFTDPDYNTRRSATYLPEVAAHE 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346340|ref|XP_003637227.1| hypothetical protein MTR_077s0041 [Medicago truncatula] gi|355503162|gb|AES84365.1| hypothetical protein MTR_077s0041 [Medicago truncatula] gi|388502294|gb|AFK39213.1| unknown [Medicago truncatula]

 Score =  266 bits (681), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 121/144 (84%), Positives = 136/144 (94%)

Query: 1   MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60
           MV+AN+EM VYCFDTLVAHYN +  P P+FD+GQHPLFVTWKKVVNGGEPRLRGCIG+LE
Sbjct: 1   MVTANKEMVVYCFDTLVAHYNGDQPPTPSFDDGQHPLFVTWKKVVNGGEPRLRGCIGSLE 60

Query: 61  ARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLI 120
           AR LINGF+DYALTSAL+DRRFPPI+ARELP LECTVSILTD+ETAN+YLDWEVG HG+I
Sbjct: 61  ARGLINGFRDYALTSALRDRRFPPIEARELPLLECTVSILTDYETANDYLDWEVGKHGII 120

Query: 121 IEFTDPEYSTRRSATYLPEVAAHE 144
           IEF+DP+Y+TRRSATYLPEVAAHE
Sbjct: 121 IEFSDPDYNTRRSATYLPEVAAHE 144

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346342|ref|XP_003637228.1| hypothetical protein MTR_077s0041 [Medicago truncatula] gi|355503163|gb|AES84366.1| hypothetical protein MTR_077s0041 [Medicago truncatula]

 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 121/144 (84%), Positives = 136/144 (94%)

Query: 1   MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60
           MV+AN+EM VYCFDTLVAHYN +  P P+FD+GQHPLFVTWKKVVNGGEPRLRGCIG+LE
Sbjct: 1   MVTANKEMVVYCFDTLVAHYNGDQPPTPSFDDGQHPLFVTWKKVVNGGEPRLRGCIGSLE 60

Query: 61  ARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLI 120
           AR LINGF+DYALTSAL+DRRFPPI+ARELP LECTVSILTD+ETAN+YLDWEVG HG+I
Sbjct: 61  ARGLINGFRDYALTSALRDRRFPPIEARELPLLECTVSILTDYETANDYLDWEVGKHGII 120

Query: 121 IEFTDPEYSTRRSATYLPEVAAHE 144
           IEF+DP+Y+TRRSATYLPEVAAHE
Sbjct: 121 IEFSDPDYNTRRSATYLPEVAAHE 144

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
TAIR|locus:2064189	214	AT2G38710 [Arabidopsis thalian	0.986	0.672	0.826	3.2e-65
MGI|MGI:2442711	310	Ammecr1l "AMME chromosomal reg	0.924	0.435	0.542	5.1e-35
ZFIN|ZDB-GENE-040426-1533	371	ammecr1 "Alport syndrome, ment	0.945	0.371	0.531	7.4e-34
UNIPROTKB|Q9Y4X0	333	AMMECR1 "AMME syndrome candida	0.945	0.414	0.531	1.2e-33
MGI|MGI:1860206	344	Ammecr1 "Alport syndrome, ment	0.945	0.401	0.531	1.2e-33
DICTYBASE|DDB_G0283437	206	DDB_G0283437 "AMMECR1 family p	0.972	0.689	0.489	1.5e-33
FB|FBgn0039136	243	CG5902 [Drosophila melanogaste	0.917	0.551	0.496	1.4e-30
ASPGD|ASPL0000039689	343	AN3064 [Emericella nidulans (t	0.760	0.323	0.477	1.5e-26
POMBASE|SPAC688.03c	193	SPAC688.03c "human AMMECR1 hom	0.931	0.704	0.401	4.4e-20
SGD|S000005815	251	YOR289W "Putative protein of u	0.712	0.414	0.416	3.6e-18

TAIR|locus:2064189 AT2G38710 [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 119/144 (82%), Positives = 135/144 (93%)

Query:     1 MVSANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE 60
             MVSANREMAVYCFDTLV+HYN+E+ PPPAF+E  HPLFVTWKK+VNGGEPRLRGCIGTLE
Sbjct:     1 MVSANREMAVYCFDTLVSHYNNEETPPPAFEEANHPLFVTWKKIVNGGEPRLRGCIGTLE 60

Query:    61 ARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLI 120
             AR LI+GFKDYALTSAL+DRRFPPIQA+ELPSL+CTVS+LTD+E A +YLDWEVG HG+I
Sbjct:    61 ARRLISGFKDYALTSALRDRRFPPIQAKELPSLQCTVSVLTDYEDAEDYLDWEVGKHGII 120

Query:   121 IEFTDPEYSTRRSATYLPEVAAHE 144
             IEFT+PE +T+RSATYLPEV AHE
Sbjct:   121 IEFTEPETNTKRSATYLPEVPAHE 144

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

MGI|MGI:2442711 Ammecr1l "AMME chromosomal region gene 1-like" [Mus musculus (taxid:10090)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 76/140 (54%), Positives = 93/140 (66%)

Query:     7 EMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLI 65
             EM  YCFD L  H Y       P F    +PLFVTWK    G + RLRGCIGT  A  L 
Sbjct:   107 EMCCYCFDVLYCHLYGFPQPRLPRFTNDPYPLFVTWK---TGRDKRLRGCIGTFSAMNLH 163

Query:    66 NGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTD 125
             +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE A++YLDWEVG HG+ IEF +
Sbjct:   164 SGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEFIN 223

Query:   126 PEYSTRRSATYLPEVAAHEE 145
              E   +R+ATYLPEVA  ++
Sbjct:   224 -EKGIKRTATYLPEVAKEQD 242

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040426-1533 ammecr1 "Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human)" [Danio rerio (taxid:7955)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 77/145 (53%), Positives = 96/145 (66%)

Query:     1 MVSANREMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTL 59
             +VSA  EM  +CFD L  H Y  +    P F    +PLFVTWK    G + RLRGCIGT 
Sbjct:   163 VVSA--EMCCFCFDVLYCHLYGYQPPRTPRFTNDPYPLFVTWKI---GRDKRLRGCIGTF 217

Query:    60 EARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGL 119
              A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE   +YLDWEVG HG+
Sbjct:   218 SAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVGDYLDWEVGVHGI 277

Query:   120 IIEFTDPEYSTRRSATYLPEVAAHE 144
              IEF + E  ++R+ATYLPEVA  +
Sbjct:   278 RIEFFN-EKGSKRTATYLPEVAKEQ 301

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q9Y4X0 AMMECR1 "AMME syndrome candidate gene 1 protein" [Homo sapiens (taxid:9606)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 77/145 (53%), Positives = 96/145 (66%)

Query:     1 MVSANREMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTL 59
             +VSA  EM  +CFD L  H Y  +    P F    +PLFVTWK    G + RLRGCIGT 
Sbjct:   125 VVSA--EMCCFCFDVLYCHLYGYQQPRTPRFTNEPYPLFVTWKI---GRDKRLRGCIGTF 179

Query:    60 EARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGL 119
              A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE   +YLDWEVG HG+
Sbjct:   180 SAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGI 239

Query:   120 IIEFTDPEYSTRRSATYLPEVAAHE 144
              IEF + E  ++R+ATYLPEVA  +
Sbjct:   240 RIEFIN-EKGSKRTATYLPEVAKEQ 263

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1860206 Ammecr1 "Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1" [Mus musculus (taxid:10090)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 77/145 (53%), Positives = 96/145 (66%)

Query:     1 MVSANREMAVYCFDTLVAH-YNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTL 59
             +VSA  EM  +CFD L  H Y  +    P F    +PLFVTWK    G + RLRGCIGT 
Sbjct:   136 VVSA--EMCCFCFDVLYCHLYGYQQPRTPRFTNEPYPLFVTWKI---GRDKRLRGCIGTF 190

Query:    60 EARCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGL 119
              A  L +G ++Y LTSALKD RFPP+   ELP L C+VS+LT+FE   +YLDWEVG HG+
Sbjct:   191 SAMNLHSGLREYTLTSALKDSRFPPMTRDELPRLFCSVSLLTNFEDVCDYLDWEVGVHGI 250

Query:   120 IIEFTDPEYSTRRSATYLPEVAAHE 144
              IEF + E  ++R+ATYLPEVA  +
Sbjct:   251 RIEFIN-EKGSKRTATYLPEVAKEQ 274

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0283437 DDB_G0283437 "AMMECR1 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 70/143 (48%), Positives = 90/143 (62%)

Query:     4 ANREMAVYCFDTLVAHYNSEDAPPPAFDEGQHPLFVTWK-KVVNGGEPRLRGCIGTLEAR 62
             A +EM  YCFD+L+ H+ ++    P F     PLFVTWK    N  EP LRGCIGT   +
Sbjct:    10 ATKEMVAYCFDSLIFHFENKPIYKPKFSNESSPLFVTWKIDNKNYDEPILRGCIGTFAEK 69

Query:    63 CLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIE 122
              L+ G   +ALTSALKD RF  I  +EL  L C VS+L  FET ++  DWE+GTHG+ IE
Sbjct:    70 NLVEGLHKFALTSALKDSRFSAITKKELTKLHCAVSLLVKFETVDSVWDWEIGTHGIWIE 129

Query:   123 FTDPEYSTRRSATYLPEVAAHEE 145
             FTDP  +   ++TYLP+V   +E
Sbjct:   130 FTDPNTNQSSNSTYLPDVIPEQE 152

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0039136 CG5902 [Drosophila melanogaster (taxid:7227)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 69/139 (49%), Positives = 89/139 (64%)

Query:     7 EMAVYCFDTLVAHYNSEDAPP-PAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLI 65
             +M ++CF+ L    N+ D P  P F    +PLFVTWK    G + RLRGCIGT  A  L 
Sbjct:    48 DMCLFCFEVLDCELNNVDGPSVPVFSNDAYPLFVTWKI---GRDKRLRGCIGTFSAMELH 104

Query:    66 NGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTD 125
             +G ++YALTSA KD RF PI   ELP L  +VSIL +FE A  +LDW++G HG+ IEF  
Sbjct:   105 HGLREYALTSAFKDSRFAPISRDELPRLTVSVSILQNFEEAQGHLDWQLGVHGIRIEFLT 164

Query:   126 PEYSTRRSATYLPEVAAHE 144
              E   +R+ATYLP+VA  +
Sbjct:   165 -ERGCKRTATYLPQVATEQ 182

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000039689 AN3064 [Emericella nidulans (taxid:162425)]

 Score = 269 (99.8 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
 Identities = 54/113 (47%), Positives = 69/113 (61%)

Query:    32 EGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQARELP 91
             E ++PLFVTW  +   G   LRGCIGT EA+ L +G K YALTSA  D RF PI    +P
Sbjct:   139 EQKYPLFVTWNTLSKSGRKSLRGCIGTFEAQELSHGLKSYALTSAFDDTRFSPIPKSLIP 198

Query:    92 SLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHE 144
             SL C++++L  FE   + LDW +GTHG+ I F       R  ATYLP+V   +
Sbjct:   199 SLSCSLTLLGSFEPCTSALDWTLGTHGIRISFI--HRGRRFGATYLPDVPVEQ 249

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

POMBASE|SPAC688.03c SPAC688.03c "human AMMECR1 homolog" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 57/142 (40%), Positives = 75/142 (52%)

Query:     6 REMAVYCFDTLVA---HYNSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEAR 62
             +E   YCF+ + A   H    D           PLFV +     G + +LRGCIGT  AR
Sbjct:     4 KEYCYYCFEVVAATLEHRKVRDKWNAKSWTRSIPLFVKFASG-KGHDKQLRGCIGTFRAR 62

Query:    63 CLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIE 122
              L+     ++  +A  D RF PI   EL  LEC + +L DFE  ++ LDWEVG HG+ I+
Sbjct:    63 PLVTNLTYFSKQAAFCDERFRPISLGELALLECQIDLLVDFEPIDDPLDWEVGIHGVSIK 122

Query:   123 FTDPEYSTRRSATYLPEVAAHE 144
             FT      R S+TYLP VAA +
Sbjct:   123 FT--ANGIRYSSTYLPSVAAEQ 142

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

SGD|S000005815 YOR289W "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 50/120 (41%), Positives = 71/120 (59%)

Query:    37 LFVTWKK------VVNGGEPR--LRGCIGTLEARCLINGFKDYALTSALKDRRFPPIQAR 88
             LF+TWKK       ++  E    LRGCIGT     + +G + Y+L +AL+DRRF PIQ R
Sbjct:    69 LFITWKKKSNKHHTIDTNEENYILRGCIGTFAKMPIAHGIEKYSLIAALEDRRFSPIQKR 128

Query:    89 ELPSLECTVSILTDFETA--------NNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEV 140
             EL  L+C+ +IL +F+T          +  DWE+G HG+ + F  P+  T  SAT+LP+V
Sbjct:   129 ELVDLKCSCNILGNFKTIFRGGGNPNGDIFDWELGKHGIELYFKHPKTGTTCSATFLPDV 188

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZVJ2	AMERL_ARATH	No assigned EC number	0.8263	0.9863	0.6728	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_X3386	SubName- Full=Putative uncharacterized protein; (213 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0013043201	hypothetical protein (291 aa)	•		•	•					0.682
	estExt_fgenesh4_pg.C_LG_XVIII0441	SubName- Full=Putative uncharacterized protein; (291 aa)	•		•	•					0.678

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	146
pfam01871	172	pfam01871, AMMECR1, AMMECR1	9e-44
COG2078	203	COG2078, AMMECR1, Uncharacterized conserved protei	1e-25
TIGR00296	200	TIGR00296, TIGR00296, uncharacterized protein, PH0	1e-23
TIGR04335	175	TIGR04335, AmmeMemoSam_A, AmmeMemoRadiSam system p	1e-20
PRK03881	467	PRK03881, PRK03881, hypothetical protein; Provisio	1e-10
PRK00801	201	PRK00801, PRK00801, hypothetical protein; Provisio	4e-08

>gnl|CDD|216752 pfam01871, AMMECR1, AMMECR1

 Score =  141 bits (358), Expect = 9e-44
 Identities = 50/145 (34%), Positives = 68/145 (46%), Gaps = 20/145 (13%)

Query: 8   MAVYCFDTLVAHYNSE------DAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEA 61
           +     + + A+             PP  +E +  +FVT KK        LRGCIGT E 
Sbjct: 1   LVRLAREAIEAYLEGGKVLEPPPELPPKLNE-KRGVFVTLKK-----RGELRGCIGTFEP 54

Query: 62  -RCLINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFETANNYLD-WEVGTHGL 119
            R L     + A+ +A +D RFPP+   ELP L   VS+L+  E  +  L+  EVG HGL
Sbjct: 55  VRPLAEAVIEAAIAAAFEDPRFPPVTEEELPDLTIEVSVLSPPEPIDVDLEDLEVGRHGL 114

Query: 120 IIEFTDPEYSTRRSATYLPEVAAHE 144
           IIEF         S   LP+VA  +
Sbjct: 115 IIEF------GGYSGLLLPQVAVEQ 133

This family consists of several AMMECR1 as well as several uncharacterized proteins. The contiguous gene deletion syndrome AMME is characterized by Alport syndrome, midface hypoplasia, mental retardation and elliptocytosis and is caused by a deletion in Xq22.3, comprising several genes including COL4A5, FACL4 and AMMECR1. This family contains sequences from several eukaryotic species as well as archaebacteria and it has been suggested that the AMMECR1 protein may have a basic cellular function, potentially in either the transcription, replication, repair or translation machinery. Length = 172

>gnl|CDD|224989 COG2078, AMMECR1, Uncharacterized conserved protein [Function unknown]

 Score = 96.2 bits (240), Expect = 1e-25
 Identities = 46/143 (32%), Positives = 60/143 (41%), Gaps = 20/143 (13%)

Query: 11  YCFDTLVAHYN-----SEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARC-L 64
              + +  +         +  P  F E +  +FVT +K    GE  LRGCIGT E    L
Sbjct: 16  LAREAIENYLEGGKVIEPEPFPKLFQE-KRGVFVTLEKYSPDGE--LRGCIGTPEPVKPL 72

Query: 65  INGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFET----ANNYL-DWEVGTHGL 119
                  A+ +AL D RFPP+   EL  +   V+ILT  E           D EVG HGL
Sbjct: 73  AEAIIKAAIEAALSDPRFPPVSLEELDDIVVEVTILTPPEEIDVPPEERPEDIEVGRHGL 132

Query: 120 IIEFTDPEYSTRRSATYLPEVAA 142
           I+E          S   LP+V  
Sbjct: 133 IVEK------GIYSGLLLPQVPV 149

Length = 203

>gnl|CDD|232909 TIGR00296, TIGR00296, uncharacterized protein, PH0010 family

 Score = 90.6 bits (225), Expect = 1e-23
 Identities = 46/112 (41%), Positives = 62/112 (55%), Gaps = 16/112 (14%)

Query: 37  LFVTWKKVVNGGEPRLRGCIGTLE-ARCLINGFKDYALTSALKDRRFPPIQARELPSLEC 95
           +F+T KK    G   LRGCIGT E    LI   ++ A+++A +D RFPP+Q  EL  ++ 
Sbjct: 46  VFITLKK---KGNKHLRGCIGTPEPVMPLIEAIEEAAISAATEDPRFPPVQLEELDDIKV 102

Query: 96  TVSILTDFET-----ANNYL-DWEVGTHGLIIEFTDPEYSTRRSATYLPEVA 141
            VSILT  ET       +Y  D E+G HGLI+EF        +    LP+VA
Sbjct: 103 EVSILTPPETIFVGGPKDYPFDIEIGRHGLIVEFGP------KRGLLLPQVA 148

Members of this functionally uncharacterized protein family have been crystallized from Pyrococcus Horikoshii, Methanosarcina Mazei, and Sulfolobus Tokodaii [Unknown function, General]. Length = 200

>gnl|CDD|234550 TIGR04335, AmmeMemoSam_A, AmmeMemoRadiSam system protein A

 Score = 82.2 bits (204), Expect = 1e-20
 Identities = 44/130 (33%), Positives = 57/130 (43%), Gaps = 25/130 (19%)

Query: 26  PPPAFDEGQHPL-------FVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSAL 77
             P  +    P        FVT  K  NG    LRGCIGT+EA R L+    + A+ +A 
Sbjct: 19  RLPDIEPELPPKLNEKGGCFVTLHK--NG---ELRGCIGTIEADRPLVEDVAENAIAAAF 73

Query: 78  KDRRFPPIQARELPSLECTVSILT-----DFETANNYL-DWEVGTHGLIIEFTDPEYSTR 131
           KD RFPP+   EL  L   VS+L+       E     L +   G  GLI+E         
Sbjct: 74  KDPRFPPLTEDELDRLTIEVSVLSPPEPLPVEDEEELLEELRPGRDGLILE------DGG 127

Query: 132 RSATYLPEVA 141
           R   +LP+V 
Sbjct: 128 RRGLFLPQVW 137

Members of this protein family belong to the same domain family as AMMECR1, a mammalian protein named for AMME - Alport syndrome, Mental Retardation, Midface hypoplasia, and Elliptocytosis. Members of the present family occur as part of a three gene system with a homolog of the mammalian protein Memo (Mediator of ErbB2-driven cell MOtility), and an uncharacterized radical SAM enzyme. Length = 175

>gnl|CDD|235170 PRK03881, PRK03881, hypothetical protein; Provisional

 Score = 58.0 bits (141), Expect = 1e-10
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 15/84 (17%)

Query: 27  PPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLE------ARCLINGFKDYALTSALKDR 80
           P      +  +FV+ KK  +G    LRGCIGT+       A  +I      A+++  +D 
Sbjct: 327 PEEMLNRRAGVFVSLKK--DG---ELRGCIGTIFPTRENIAEEIIRN----AISAGTEDP 377

Query: 81  RFPPIQARELPSLECTVSILTDFE 104
           RFPP++  EL  L  +V +LT+ E
Sbjct: 378 RFPPVEEDELDDLVYSVDVLTEPE 401

Length = 467

>gnl|CDD|234839 PRK00801, PRK00801, hypothetical protein; Provisional

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 16/104 (15%)

Query: 27  PPAFDEGQHPLFVTWKKVVNGGEPRLRGCIG-TLEARCLINGFKDYALTSALKDRRFPPI 85
           PP F E +  +FVT  K    G   LRGCIG       L+    D A+++A +D RFPP+
Sbjct: 37  PPVFWE-KRGVFVTLNK---HGV--LRGCIGFPYPDSPLVEAIIDSAISAATRDPRFPPV 90

Query: 86  QARELPSLECTVSILTDFETAN-------NYLDWEVGTHGLIIE 122
           +  E+  +   V++LT  E            +  EVG HGLI++
Sbjct: 91  KLEEMDEITVEVTVLTPPELIEGPPEELPEKI--EVGRHGLIVK 132

Length = 201

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	146
PF01871	171	AMMECR1: AMMECR1; InterPro: IPR002733 The contiguo	100.0
TIGR00296	200	uncharacterized protein, PH0010 family. Members of	100.0
KOG3274	210	consensus Uncharacterized conserved protein, AMMEC	100.0
PRK00801	201	hypothetical protein; Provisional	100.0
COG2078	203	AMMECR1 Uncharacterized conserved protein [Functio	100.0
PRK03881	467	hypothetical protein; Provisional	100.0

>PF01871 AMMECR1: AMMECR1; InterPro: IPR002733 The contiguous gene deletion syndrome is characterised by Alport syndrome (A), mental retardation (M), midface hypoplasia (M), and elliptocytosis (E), as well as generalized hypoplasia and cardiac abnormalities

Probab=100.00  E-value=8e-51  Score=316.86  Aligned_cols=128  Identities=38%  Similarity=0.637  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHhhcCCCCC--CCC---CCCCCCceEEEEEEecCCCCccceeeeccccc-ccHHHHHHHHHHHhhhcCCC
Q 032132            8 MAVYCFDTLVAHYNSEDAP--PPA---FDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRR   81 (146)
Q Consensus         8 l~~~ar~~i~~~l~~~~~~--~~~---~~~~~~g~FVTl~~~~~g~~~~LRGCIGt~~p-~pL~~~i~~~A~~AA~~DpR   81 (146)
                      ||.+||++|.++|++++..  .++   ....++|+||||++  +|   +||||||+++| +||+++|++||++|||+|||
T Consensus         1 Ll~~Ar~ai~~~l~~~~~~~~~~~~~~~l~~~~g~FVTl~~--~g---~LRGCIGt~~p~~~L~~~v~~~A~~AA~~DpR   75 (171)
T PF01871_consen    1 LLRLAREAIESYLRGGPLPPPPPPLPPELSEPRGVFVTLKK--DG---ELRGCIGTFEPVRPLAEDVIENAIAAAFEDPR   75 (171)
T ss_dssp             HHHHHHHHHHHHHHHSSSCCCCCT--GGGGSBEEEEEEEEE--CC---CEEEEEEESSSESBHHHHHHHHHHHHHHT-TT
T ss_pred             CHHHHHHHHHHHHcCCCCCCCCCCCChhhcCceeEEEEEEE--CC---EEEEEeccCCcchhHHHHHHHHHHHHhhCCCC
Confidence            7999999999999888742  111   11569999999999  88   99999999999 89999999999999999999


Q ss_pred             CCCCCcCCCCCeeEEEEeecCceecCCCcCcccccceeEEEEecCCCCCCeeeeecCccccccCC
Q 032132           82 FPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEEA  146 (146)
Q Consensus        82 F~Pl~~~El~~l~ieVSvL~~~e~~~~~~~~~~G~hGlii~~~~~~~~~~~~~~~LPqV~~E~~~  146 (146)
                      |+||+++||++|+|+||||+++++++++.+|++|+|||+|++      ++++||||||||.||||
T Consensus        76 F~Pl~~~El~~l~ieVSvL~~~~~i~~~~~~~~g~~Glil~~------~~~~~~~LPqVa~E~~w  134 (171)
T PF01871_consen   76 FPPLTPSELPELSIEVSVLSPPEPISDPEDWEPGRHGLILEF------GGYRGTFLPQVAWEQGW  134 (171)
T ss_dssp             S----GGGGGGEEEEEEEE---EE--GGGG--TTT-EEEEEE------TTEEEEE-THHHHHTT-
T ss_pred             CCCCCHHHHcccEEEEEeccCcEEcCCHHHcccCcceeEEEe------cCcceEECCCchhhcCC
Confidence            999999999999999999999999999999999999999999      79999999999999998

It is caused by a deletion in Xq22.3, comprising several genes including AMME chromosomal region gene 1 (AMMECR1), which encodes a protein with a nuclear location and presently unknown function. The C-terminal region of AMMECR1 (from residue 122 to 333) is well conserved, and homologues appear in species ranging from bacteria and archaea to eukaryotes. The high level of conservation of the AMMECR1 domain points to a basic cellular function, potentially in either the transcription, replication, repair or translation machinery [, ]. The AMMECR1 domain contains a 6-amino-acid motif (LRGCIG) that might be functionally important since it is strikingly conserved throughout evolution []. The AMMECR1 domain consists of two distinct subdomains of different sizes. The large subdomain, which contains both the N- and C-terminal regions, consists of five alpha-helices and five beta-strands. These five beta-strands form an antiparallel beta-sheet. The small subdomain consists of four alpha-helices and three beta-strands, and these beta-strands also form an antiparallel beta-sheet. The conserved 'LRGCIG' motif is located at beta(2) and its N-terminal loop, and most of the side chains of these residues point toward the interface of the two subdomains. The two subdomains are connected by only two loops, and the interaction between the two subdomains is not strong. Thus, these subdomains may move dynamically when the substrate enters the cleft. The size of the cleft suggests that the substrate is large, e.g., the substrate may be a nucleic acid or protein. However, the inner side of the cleft is not filled with positively charged residues, and therefore it is unlikely that negatively charged nucleic acids such as DNA or RNA interact at this site []. ; PDB: 1WSC_B 1VAJ_A 1ZQ7_D.

>TIGR00296 uncharacterized protein, PH0010 family

Probab=100.00  E-value=7.1e-50  Score=318.37  Aligned_cols=133  Identities=37%  Similarity=0.573  Sum_probs=119.1

Q ss_pred             chHHHHHHHHHHHHhhcCCCCC--CCCCC---CCCCceEEEEEEecCCCCccceeeeccccc-ccHHHHHHHHHHHhhhc
Q 032132            5 NREMAVYCFDTLVAHYNSEDAP--PPAFD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALK   78 (146)
Q Consensus         5 ~~~l~~~ar~~i~~~l~~~~~~--~~~~~---~~~~g~FVTl~~~~~g~~~~LRGCIGt~~p-~pL~~~i~~~A~~AA~~   78 (146)
                      .+.||.+||++|.++|++++.+  +++++   ..++||||||++  +| +.+|||||||+.| +||+++|++||++|||+
T Consensus         9 ~~~l~~lAr~ai~~~l~~~~~~~~~~~~p~~l~~~~g~FVTl~~--~~-~~~LRGCIGs~~p~~pL~~~v~~~A~~AA~~   85 (200)
T TIGR00296         9 GSSAVRYARYAIESHLNGGKSSRLYPDLPIVFNEKRGVFITLKK--KG-NKHLRGCIGTPEPVMPLIEAIEEAAISAATE   85 (200)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCCCccCChhhCCcccEEEEEEE--CC-CcCCCcccccCCCcccHHHHHHHHHHHHHcC
Confidence            4669999999999999876632  23443   679999999998  56 1249999999999 89999999999999999


Q ss_pred             CCCCCCCCcCCCCCeeEEEEeecCceecC------CCcCcccccceeEEEEecCCCCCCeeeeecCccccccCC
Q 032132           79 DRRFPPIQARELPSLECTVSILTDFETAN------NYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEEA  146 (146)
Q Consensus        79 DpRF~Pl~~~El~~l~ieVSvL~~~e~~~------~~~~~~~G~hGlii~~~~~~~~~~~~~~~LPqV~~E~~~  146 (146)
                      ||||+||+.+||++|.||||||+++++++      ++.+|+||+|||+|++      +.+|||||||||+||||
T Consensus        86 DpRF~Pl~~~EL~~l~ieVSvL~~~e~i~~~~~~~~~~~~~~G~hGlii~~------g~~~gt~LPqVa~E~~w  153 (200)
T TIGR00296        86 DPRFPPVQLEELDDIKVEVSILTPPETIFVGGPKDYPFDIEIGRHGLIVEF------GPKRGLLLPQVAVEYGW  153 (200)
T ss_pred             CCCCCCCChHHhCCcEEEEEeCCCCEEcccCCccccHHHcccccceEEEEE------CCccEEECCccHhhcCC
Confidence            99999999999999999999999999993      5678999999999999      68999999999999999

Members of this functionally uncharacterized protein family have been crystallized from Pyrococcus Horikoshii, Methanosarcina Mazei, and Sulfolobus Tokodaii.

>KOG3274 consensus Uncharacterized conserved protein, AMMECR1 [Function unknown]

Probab=100.00  E-value=1.4e-50  Score=317.88  Aligned_cols=142  Identities=65%  Similarity=1.097  Sum_probs=132.9

Q ss_pred             CcccchHHHHHHHHHHHHhhcCCCCC--CCCCCCCCCceEEEEEEecCCCCccceeeecccccccHHHHHHHHHHHhhhc
Q 032132            1 MVSANREMAVYCFDTLVAHYNSEDAP--PPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALTSALK   78 (146)
Q Consensus         1 ~~~~~~~l~~~ar~~i~~~l~~~~~~--~~~~~~~~~g~FVTl~~~~~g~~~~LRGCIGt~~p~pL~~~i~~~A~~AA~~   78 (146)
                      |.+|+.+||.|||++|.++|++.+.+  ++.+.+...++||||++   |.+.+||||||||.++||+.++.+||+.|||+
T Consensus        10 ~~~~~~~ma~ycF~vl~~~ln~~k~p~~~~~~~~~~~PLFvtwk~---g~dkrLRGCIGTFsam~L~~Gl~eYaltsAl~   86 (210)
T KOG3274|consen   10 MTSANSEMAVYCFDVLYAHLNNEKSPSLPPDFRNRLYPLFVTWKK---GHDKRLRGCIGTFSAMPLHSGLREYALTSALK   86 (210)
T ss_pred             ccccCcceEEEehhhhhhhhccccCCCcchhhhccCcceeEEecc---CCCcccccceeehhhcchhhhHHHHHHHHHhh
Confidence            56799999999999999999988776  45677888999999996   55679999999999999999999999999999


Q ss_pred             CCCCCCCCcCCCCCeeEEEEeecCceecCCCcCcccccceeEEEEecCCCCCCeeeeecCccccccCC
Q 032132           79 DRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEEA  146 (146)
Q Consensus        79 DpRF~Pl~~~El~~l~ieVSvL~~~e~~~~~~~~~~G~hGlii~~~~~~~~~~~~~~~LPqV~~E~~~  146 (146)
                      |.||+||+.+||++|.|+||+|++||++.|+.||++|+|||.|+|.+ ++|..++|||||+||.||||
T Consensus        87 DsRF~PIsr~ELp~L~CsvslL~nFE~i~d~lDWevG~HGIrieF~~-e~g~krsATyLPeVa~EQgW  153 (210)
T KOG3274|consen   87 DSRFPPISREELPSLQCSVSLLTNFEDIFDYLDWEVGVHGIRIEFTN-ETGTKRSATYLPEVAAEQGW  153 (210)
T ss_pred             cccCCCCChhhcCceEEEEEeeccchhcccccceeeccceEEEEEEc-CCCcEeeeeecccchhhcCC
Confidence            99999999999999999999999999999999999999999999987 45788999999999999999

>PRK00801 hypothetical protein; Provisional

Probab=100.00  E-value=6.4e-49  Score=313.08  Aligned_cols=131  Identities=28%  Similarity=0.382  Sum_probs=119.5

Q ss_pred             chHHHHHHHHHHHHhhcCCCCCC--CCCC---CCCCceEEEEEEecCCCCccceeeeccccc-ccHHHHHHHHHHHhhhc
Q 032132            5 NREMAVYCFDTLVAHYNSEDAPP--PAFD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALK   78 (146)
Q Consensus         5 ~~~l~~~ar~~i~~~l~~~~~~~--~~~~---~~~~g~FVTl~~~~~g~~~~LRGCIGt~~p-~pL~~~i~~~A~~AA~~   78 (146)
                      .+.|+.+||++|.++|.+++.+.  .+++   ..++||||||++  +|   +|||||||+.| +||+++|++||++|||+
T Consensus         9 ~~~Ll~lAR~ai~~~l~~~~~~~~~~~~~~~l~~~~g~FVTl~~--~g---~LRGCIGs~~p~~pL~~~v~~~A~~AA~~   83 (201)
T PRK00801          9 GEFAVRLARRAIEEYLRTGKVIEPPKDLPPVFWEKRGVFVTLNK--HG---VLRGCIGFPYPDSPLVEAIIDSAISAATR   83 (201)
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCCCccCCHhHcccccEEEEEEE--CC---eeccccCCCCCcccHHHHHHHHHHHHHcC
Confidence            45699999999999998766442  2223   578999999998  78   99999999999 79999999999999999


Q ss_pred             CCCCCCCCcCCCCCeeEEEEeecCceecCC-----CcCcccccceeEEEEecCCCCCCeeeeecCccccccCC
Q 032132           79 DRRFPPIQARELPSLECTVSILTDFETANN-----YLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEEA  146 (146)
Q Consensus        79 DpRF~Pl~~~El~~l~ieVSvL~~~e~~~~-----~~~~~~G~hGlii~~~~~~~~~~~~~~~LPqV~~E~~~  146 (146)
                      ||||+||+++||++|.||||||++++++++     +.+|+||+|||||++      |.|+||||||||+||||
T Consensus        84 DpRF~Pl~~~EL~~l~ieVSvLs~~e~i~~~~~~l~~~~~~G~~Glii~~------g~~~g~~LPqV~~e~~w  150 (201)
T PRK00801         84 DPRFPPVKLEEMDEITVEVTVLTPPELIEGPPEELPEKIEVGRHGLIVKK------GIYSGLLLPQVAPEWGF  150 (201)
T ss_pred             CCCCCCCChHHhCCcEEEEEEcCCCEEccCcchhhHHhccccceEEEEEe------CCccEEECCcchhhcCC
Confidence            999999999999999999999999999975     678999999999999      78999999999999999

>COG2078 AMMECR1 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=6.3e-45  Score=288.80  Aligned_cols=133  Identities=32%  Similarity=0.458  Sum_probs=121.0

Q ss_pred             hHHHHHHHHHHHHhhcCCCCCCCC-CC---CCCCceEEEEEEecCCCCccceeeeccccc-ccHHHHHHHHHHHhhhcCC
Q 032132            6 REMAVYCFDTLVAHYNSEDAPPPA-FD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDR   80 (146)
Q Consensus         6 ~~l~~~ar~~i~~~l~~~~~~~~~-~~---~~~~g~FVTl~~~~~g~~~~LRGCIGt~~p-~pL~~~i~~~A~~AA~~Dp   80 (146)
                      ..+|.|||.+|+++|++++.+.+. ++   +++.|+||||++.+  .+++||||||++.| .+|+++++++|+.||++||
T Consensus        11 ~~~V~lAR~ai~~~L~~gk~~~~~~~~~~~~~k~gvFvTl~~~~--~~~~LRGCIG~~~p~~~l~~ai~~~Ai~AA~~DP   88 (203)
T COG2078          11 HPLVRLAREAIENYLEGGKVIEPEPFPKLFQEKRGVFVTLEKYS--PDGELRGCIGTPEPVKPLAEAIIKAAIEAALSDP   88 (203)
T ss_pred             hHHHHHHHHHHHHHhccCCcCCCcccchhhhhccceEEEEEEeC--CCCceeeecccCcccCcHHHHHHHHHHHHHhcCC
Confidence            579999999999999988876543 22   78999999999973  12399999999999 6999999999999999999


Q ss_pred             CCCCCCcCCCCCeeEEEEeecCceecCCC-----cCcccccceeEEEEecCCCCCCeeeeecCccccccCC
Q 032132           81 RFPPIQARELPSLECTVSILTDFETANNY-----LDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEEA  146 (146)
Q Consensus        81 RF~Pl~~~El~~l~ieVSvL~~~e~~~~~-----~~~~~G~hGlii~~~~~~~~~~~~~~~LPqV~~E~~~  146 (146)
                      ||+|++.+||+++.||||+|++|+++.+.     .+|++|+||||+.+      |.+||++||||++||+|
T Consensus        89 RF~pv~~~EL~~i~veV~iLt~pe~i~~~p~~~p~~ie~G~~Gliv~~------g~~sgllLPqV~vE~~w  153 (203)
T COG2078          89 RFPPVSLEELDDIVVEVTILTPPEEIDVPPEERPEDIEVGRHGLIVEK------GIYSGLLLPQVPVEYRW  153 (203)
T ss_pred             CCCCCChhHhcceEEEEEEcCCCeecCCCchhChhheeecceEEEEec------CCcceeecCccccccCC
Confidence            99999999999999999999999998754     78999999999998      78999999999999999

>PRK03881 hypothetical protein; Provisional

Probab=100.00  E-value=7.5e-41  Score=293.52  Aligned_cols=125  Identities=27%  Similarity=0.466  Sum_probs=114.2

Q ss_pred             chHHHHHHHHHHHHhhcCCCCCC--CC----CCCCCCceEEEEEEecCCCCccceeeeccccc-c-cHHHHHHHHHHHhh
Q 032132            5 NREMAVYCFDTLVAHYNSEDAPP--PA----FDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-R-CLINGFKDYALTSA   76 (146)
Q Consensus         5 ~~~l~~~ar~~i~~~l~~~~~~~--~~----~~~~~~g~FVTl~~~~~g~~~~LRGCIGt~~p-~-pL~~~i~~~A~~AA   76 (146)
                      .+.|+.+||++|+++|+++++.+  ++    +.+.++||||||++  +|   +|||||||++| + ||+++|++||++||
T Consensus       299 ~~~l~~lAr~~i~~~l~~~~~~~~~~~~~~~~~~~~~g~FVTl~~--~g---~LRGCIG~~~p~~~~L~~~v~~~a~~AA  373 (467)
T PRK03881        299 EDPYVRLARESLESYVKTGKPLPVPDYLPEEMLNRRAGVFVSLKK--DG---ELRGCIGTIFPTRENIAEEIIRNAISAG  373 (467)
T ss_pred             hhHHHHHHHHHHHHHhCcCCCCCCCccCChHHhCCcccEEEEEEE--CC---eeeeeeeecCCCcchHHHHHHHHHHHHh
Confidence            46699999999999998765432  11    23678999999998  78   99999999999 4 89999999999999


Q ss_pred             hcCCCCCCCCcCCCCCeeEEEEeecCceecCCCcCcccccceeEEEEecCCCCCCeeeeecCcc
Q 032132           77 LKDRRFPPIQARELPSLECTVSILTDFETANNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEV  140 (146)
Q Consensus        77 ~~DpRF~Pl~~~El~~l~ieVSvL~~~e~~~~~~~~~~G~hGlii~~~~~~~~~~~~~~~LPqV  140 (146)
                      |+||||+||+++||++|.||||||+++|+++++.+|+||+|||+|++      +.++|||||||
T Consensus       374 ~~DpRF~pl~~~El~~l~i~VsvL~~~~~~~~~~~~~~g~~Gli~~~------~~~~g~~LP~v  431 (467)
T PRK03881        374 TEDPRFPPVEEDELDDLVYSVDVLTEPEPVSSLDELDPKRYGVIVRS------GRRRGLLLPDL  431 (467)
T ss_pred             cCCCCCCCCChHHhCCeEEEEEEcCCCeECCCHHHcCCccceEEEEE------CCccEEECCCC
Confidence            99999999999999999999999999999999999999999999999      78999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	146
1wsc_A	230	Crystal Structure Of St0229, Function Unknown Prote		7e-06
1zq7_A	207	X-Ray Crystal Structure Of Protein Q8pzk8 From Meth		5e-05
1vaj_A	214	Crystal Structure Of Uncharacterized Protein Ph0010		5e-04

>pdb|1WSC|A Chain A, Crystal Structure Of St0229, Function Unknown Protein From Sulfolobus Tokodaii Length = 230

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 47  GGEPRLRGCIGTLEARC-LINGFKDYALTSALKDRRFPPIQARELPSLECTVSILTDFET 105
           G    LRGCIG +EA   L       A+ +A  D RFPP+   E  ++   V++LT  + 
Sbjct: 66  GNSTSLRGCIGYVEAVAPLKEIVSKAAIAAAFSDPRFPPLSKGEFDNIIIEVTVLTKPQE 125
Query: 106 ANNYLDWE------VGTHGLIIEFTDPEYSTRRSATYLPEV 140
            +    WE      VG  GLI+     EY    S   LP+V
Sbjct: 126 IDVENRWELPKKIKVGEDGLIV-----EYGILYSGLLLPQV 161

>pdb|1ZQ7|A Chain A, X-Ray Crystal Structure Of Protein Q8pzk8 From Methanosarcina Mazei. Northeast Structural Genomics Consortium Target Mar9. Length = 207

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 12/101 (11%)
Query: 28  PAFDEGQHPLFVTWKKVVNGGEPRLRGCIG-TLEARCLINGFKDYALTSALKDRRFPPIQ 86
           P F+E +  +FVT   +  GG   LRGCIG       L     D A+++A +D RFP ++
Sbjct: 39  PVFEEYRG-VFVT---LTEGG--LLRGCIGHPYPDSTLKEAILDSAISAATRDPRFPTVE 92
Query: 87  ARELPSLECTVSILTDFETANNYL-----DWEVGTHGLIIE 122
             E  ++   V+ILT  E  N          E+G HGLI++
Sbjct: 93  QDEXKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVK 133

>pdb|1VAJ|A Chain A, Crystal Structure Of Uncharacterized Protein Ph0010 From Pyrococcus Horikoshii Length = 214

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 23  EDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIG-TLEARCLINGFKDYALTSALKDRR 81
           +D PP  ++  +  +FVT  +     +  LRGCIG       L+      A+ SA+ D R
Sbjct: 35  KDTPPELWE--KXGVFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVDDPR 92
Query: 82  FPPIQARELPSLECTVSILTDFETANNYLD-----WEVGTHGLIIE 122
           FPP++  E  +L   VS+LT  E      +      +VG  GLI+E
Sbjct: 93  FPPVKLEEXDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVE 138

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	146
1vaj_A	214	Hypothetical protein PH0010; alpha + beta fold, st	2e-32
1wsc_A	230	Hypothetical protein ST0229; structural genomics,	6e-30
1zq7_A	207	Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8	1e-26

>1vaj_A Hypothetical protein PH0010; alpha + beta fold, structural genomics, unknown function; 1.82A {Pyrococcus horikoshii} SCOP: d.309.1.1 Length = 214

 Score =  113 bits (283), Expect = 2e-32
 Identities = 38/125 (30%), Positives = 53/125 (42%), Gaps = 13/125 (10%)

Query: 23  EDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRR 81
               PP   E +  +FVT  +     +  LRGCIG       L+      A+ SA+ D R
Sbjct: 34  PKDTPPELWE-KMGVFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVDDPR 92

Query: 82  FPPIQARELPSLECTVSILTDFE-----TANNYLDWEVGTHGLIIEFTDPEYSTRRSATY 136
           FPP++  E+ +L   VS+LT  E             +VG  GLI+E          S   
Sbjct: 93  FPPVKLEEMDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVE------KGIYSGLL 146

Query: 137 LPEVA 141
           LP+V 
Sbjct: 147 LPQVP 151

>1wsc_A Hypothetical protein ST0229; structural genomics, function unknown protein, unknown function; 2.45A {Sulfolobus tokodaii} SCOP: d.309.1.1 Length = 230

 Score =  107 bits (268), Expect = 6e-30
 Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 14/127 (11%)

Query: 22  SEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDR 80
                 P  ++ +   FVT +         LRGCIG +EA   L       A+ +A  D 
Sbjct: 43  LSSLNDPILNK-KGLAFVTLETYYGNS-TSLRGCIGYVEAVAPLKEIVSKAAIAAAFSDP 100

Query: 81  RFPPIQARELPSLECTVSILTDFETANNYLDWE------VGTHGLIIEFTDPEYSTRRSA 134
           RFPP+   E  ++   V++LT  +  +    WE      VG  GLI+E+         S 
Sbjct: 101 RFPPLSKGEFDNIIIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEYGI-----LYSG 155

Query: 135 TYLPEVA 141
             LP+V 
Sbjct: 156 LLLPQVP 162

>1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural genomics, PSI, protein structure initiative; 2.11A {Methanosarcina mazei} SCOP: d.309.1.1 Length = 207

 Score = 98.4 bits (245), Expect = 1e-26
 Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 18/127 (14%)

Query: 21  NSEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKD 79
            S     P F+E    +FVT  +        LRGCIG       L     D A+++A +D
Sbjct: 32  ASGVELSPVFEE-YRGVFVTLTE-----GGLLRGCIGHPYPDSTLKEAILDSAISAATRD 85

Query: 80  RRFPPIQARELPSLECTVSILTDFETANNYLD-----WEVGTHGLIIEFTDPEYSTRRSA 134
            RFP ++  E+ ++   V+ILT  E  N          E+G HGLI++            
Sbjct: 86  PRFPTVEQDEMKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQ------GYCQG 139

Query: 135 TYLPEVA 141
             LP+VA
Sbjct: 140 LLLPQVA 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	146
1zq7_A	207	Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8	100.0
1vaj_A	214	Hypothetical protein PH0010; alpha + beta fold, st	100.0
1wsc_A	230	Hypothetical protein ST0229; structural genomics,	100.0

>1zq7_A Hypothetical protein MM0484; X-RAY, NESG, MAR9, Q8PZK8, structural genomics, PSI, protein structure initiative; 2.11A {Methanosarcina mazei} SCOP: d.309.1.1

Probab=100.00  E-value=1.7e-50  Score=322.28  Aligned_cols=132  Identities=30%  Similarity=0.458  Sum_probs=121.2

Q ss_pred             cchHHHHHHHHHHHHhhcCCCCCCCC-----CC---CCCCceEEEEEEecCCCCccceeeeccccc-ccHHHHHHHHHHH
Q 032132            4 ANREMAVYCFDTLVAHYNSEDAPPPA-----FD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALT   74 (146)
Q Consensus         4 ~~~~l~~~ar~~i~~~l~~~~~~~~~-----~~---~~~~g~FVTl~~~~~g~~~~LRGCIGt~~p-~pL~~~i~~~A~~   74 (146)
                      ..+.||.+||++|+++|++++.+.++     ++   +.++||||||++  +|   +|||||||++| +||+++|++||++
T Consensus         6 e~~~lv~lAR~aI~~~l~~~~~~~p~~~~~~~~~~l~~~~g~FVTl~~--~g---~LRGCIGt~~p~~~L~~~i~~~Ai~   80 (207)
T 1zq7_A            6 EGRAAVKLARKTIEIFLSKGKSPRPDASGVELSPVFEEYRGVFVTLTE--GG---LLRGCIGHPYPDSTLKEAILDSAIS   80 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCCC---CCCCCCGGGGSBCCEEEEEEE--TT---EEEEEEEECSCCSBHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCCCCCccccccCCChhhcCcccEEEEEEE--CC---eEEEeeccCCccccHHHHHHHHHHH
Confidence            35679999999999999877655442     33   578999999998  78   99999999999 7999999999999


Q ss_pred             hhhcCCCCCCCCcCCCCCeeEEEEeecCceec-----CCCcCcccccceeEEEEecCCCCCCeeeeecCccccccCC
Q 032132           75 SALKDRRFPPIQARELPSLECTVSILTDFETA-----NNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEEA  146 (146)
Q Consensus        75 AA~~DpRF~Pl~~~El~~l~ieVSvL~~~e~~-----~~~~~~~~G~hGlii~~~~~~~~~~~~~~~LPqV~~E~~~  146 (146)
                      |||+||||+||+.+||++|.|+||||++|+++     +++.+|+||+|||+|++      |.++||||||||+||||
T Consensus        81 AA~~DpRF~Pl~~~EL~~l~ieVsvLs~~e~~~~~~~~~~~~~~~G~hGlii~~------g~~~g~lLPqVa~E~gW  151 (207)
T 1zq7_A           81 AATRDPRFPTVEQDEMKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQ------GYCQGLLLPQVAPENDM  151 (207)
T ss_dssp             HHHSCTTSCCCCGGGGGGCEEEEEEECCCEECCSCTTTHHHHCCTTTCEEEEEE------TTEEEEECTTHHHHTTC
T ss_pred             HccCCCCCCCCCHHHHcCcEEEEEEccCCEEcccccccCHHHcCCCCceEEEEE------CCeeeEECCcchhhcCC
Confidence            99999999999999999999999999999999     77889999999999999      79999999999999999

>1vaj_A Hypothetical protein PH0010; alpha + beta fold, structural genomics, unknown function; 1.82A {Pyrococcus horikoshii} SCOP: d.309.1.1

Probab=100.00  E-value=3.7e-50  Score=321.65  Aligned_cols=136  Identities=26%  Similarity=0.310  Sum_probs=121.2

Q ss_pred             chHHHHHHHHHHHHhhcCCCCC--CCCCC---CCCCceEEEEEEecCCCCccceeeeccccc-ccHHHHHHHHHHHhhhc
Q 032132            5 NREMAVYCFDTLVAHYNSEDAP--PPAFD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALK   78 (146)
Q Consensus         5 ~~~l~~~ar~~i~~~l~~~~~~--~~~~~---~~~~g~FVTl~~~~~g~~~~LRGCIGt~~p-~pL~~~i~~~A~~AA~~   78 (146)
                      .+.||.+||++|+++|++++.+  ++.++   +.++||||||++.++|.+++||||||||+| +||+++|++||++|||+
T Consensus        10 g~~lv~lAR~aI~~~L~~~~~~~~p~~~~~~l~~~~g~FVTl~~~~~~~~g~LRGCIGt~~p~~~L~~~i~~~Ai~AA~~   89 (214)
T 1vaj_A           10 GEFLVRLARRAIEEYLKTGKEIEPPKDTPPELWEKMGVFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVD   89 (214)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCCCCTTCCGGGGSBCEEEEEEEETTSCGGGTEEEEEEESSSCSBHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCCCcccChhhcCcccEEEEEEECcCCCCCceeeeecCCCccccHHHHHHHHHHHhccC
Confidence            5679999999999999876654  22233   678999999997422223499999999999 89999999999999999


Q ss_pred             CCCCCCCCcCCCCCeeEEEEeecCceec-----CCCcCcccccceeEEEEecCCCCCCeeeeecCccccccCC
Q 032132           79 DRRFPPIQARELPSLECTVSILTDFETA-----NNYLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEEA  146 (146)
Q Consensus        79 DpRF~Pl~~~El~~l~ieVSvL~~~e~~-----~~~~~~~~G~hGlii~~~~~~~~~~~~~~~LPqV~~E~~~  146 (146)
                      ||||+||+++||++|.|+||||++|+++     +++.+|++|+|||+|++      |.++||||||||+||||
T Consensus        90 DpRF~Pl~~~EL~~l~ieVsvL~~~e~i~~~~~~~~~~~~~G~hGlii~~------g~~~g~~LPqV~~E~~W  156 (214)
T 1vaj_A           90 DPRFPPVKLEEMDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVEK------GIYSGLLLPQVPVEWGW  156 (214)
T ss_dssp             CTTSCCCCGGGGGGEEEEEEEECCCEECCSCGGGGGGGCCTTTCEEEEEE------TTEEEEECTHHHHHHTC
T ss_pred             CCCCCCCCHHHhcCcEEEEEEcCCcEEcccccccCHHHcCCCCceEEEEe------CCeeEEECCCchhhcCC
Confidence            9999999999999999999999999999     57789999999999999      79999999999999999

>1wsc_A Hypothetical protein ST0229; structural genomics, function unknown protein, unknown function; 2.45A {Sulfolobus tokodaii} SCOP: d.309.1.1

Probab=100.00  E-value=8.5e-49  Score=316.63  Aligned_cols=136  Identities=26%  Similarity=0.353  Sum_probs=120.6

Q ss_pred             cchHHHHHHHHHHHHhhcCCCCCCC-C----CC---CCCCceEEEEEEecCCCCccceeeeccccc-ccHHHHHHHHHHH
Q 032132            4 ANREMAVYCFDTLVAHYNSEDAPPP-A----FD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALT   74 (146)
Q Consensus         4 ~~~~l~~~ar~~i~~~l~~~~~~~~-~----~~---~~~~g~FVTl~~~~~g~~~~LRGCIGt~~p-~pL~~~i~~~A~~   74 (146)
                      ..+.||.+||++|+++|++++.+++ .    ++   +.++||||||++.+ +.+++|||||||++| +||+++|++||++
T Consensus        16 e~~~lv~lAR~aI~~~L~~~~~~~p~~~~~~~~~~l~~~~g~FVTl~~~~-~~~g~LRGCIGt~~p~~~L~~~i~~~Ai~   94 (230)
T 1wsc_A           16 LGKVLIKIARDSIANKLGILKINLEDYLSSLNDPILNKKGLAFVTLETYY-GNSTSLRGCIGYVEAVAPLKEIVSKAAIA   94 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSCSCHHHHHHHCCCGGGGSEEEEEEEEEEEC-SSCEEEEEEEEEEEEEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCCCCCCccccccCchhhcCcccEEEEEEECC-CCCCceeeeecCCCccccHHHHHHHHHHH
Confidence            3577999999999999988765322 1    33   67899999999631 223399999999999 7999999999999


Q ss_pred             hhhcCCCCCCCCcCCCCCeeEEEEeecCceecC------CCcCcccccceeEEEEecCCCCC-CeeeeecCccccccCC
Q 032132           75 SALKDRRFPPIQARELPSLECTVSILTDFETAN------NYLDWEVGTHGLIIEFTDPEYST-RRSATYLPEVAAHEEA  146 (146)
Q Consensus        75 AA~~DpRF~Pl~~~El~~l~ieVSvL~~~e~~~------~~~~~~~G~hGlii~~~~~~~~~-~~~~~~LPqV~~E~~~  146 (146)
                      |||+||||+||+.+||++|.|+||||++|++++      ++.+|+||+|||+|++      | .++||||||||.||||
T Consensus        95 AA~~DpRF~Pl~~~EL~~l~ieVsvLs~~e~i~~~~~~~~~~~~~~G~hGlii~~------g~~~~g~lLPqV~~e~~w  167 (230)
T 1wsc_A           95 AAFSDPRFPPLSKGEFDNIIIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEY------GILYSGLLLPQVPMEYCW  167 (230)
T ss_dssp             HHHTCTTSCCCCHHHHTTEEEEEEEECCCEECCCSCGGGGGGGCCTTTCEEEEEE------TTTEEEEECTHHHHHTTC
T ss_pred             hccCCCCCCCCCHHHHcCcEEEEEEcCCcEEcccCCcccCHHHcCCCCCeEEEee------CCCceEEECCCcccccCC
Confidence            999999999999999999999999999999994      6789999999999999      5 9999999999999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	146
d1vaja1	203	d.309.1.1 (A:3-205) Hypothetical protein PH0010 {A	5e-35
d1wsca1	225	d.309.1.1 (A:3-227) Hypothetical protein ST0229 {S	1e-32
d1zq7a1	199	d.309.1.1 (A:1-199) Hypothetical protein MM0484 {M	2e-29

>d1vaja1 d.309.1.1 (A:3-205) Hypothetical protein PH0010 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 203

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein PH0010
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  118 bits (297), Expect = 5e-35
 Identities = 38/125 (30%), Positives = 53/125 (42%), Gaps = 13/125 (10%)

Query: 23  EDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEARC-LINGFKDYALTSALKDRR 81
               PP   E +  +FVT  +     +  LRGCIG       L+      A+ SA+ D R
Sbjct: 32  PKDTPPELWE-KMGVFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVDDPR 90

Query: 82  FPPIQARELPSLECTVSILTDFETANN-----YLDWEVGTHGLIIEFTDPEYSTRRSATY 136
           FPP++  E+ +L   VS+LT  E             +VG  GLI+E          S   
Sbjct: 91  FPPVKLEEMDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVEK------GIYSGLL 144

Query: 137 LPEVA 141
           LP+V 
Sbjct: 145 LPQVP 149

>d1wsca1 d.309.1.1 (A:3-227) Hypothetical protein ST0229 {Sulfolobus tokodaii [TaxId: 111955]} Length = 225

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein ST0229
species: Sulfolobus tokodaii [TaxId: 111955]

 Score =  113 bits (283), Expect = 1e-32
 Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 14/126 (11%)

Query: 23  EDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDRR 81
                P  ++ +   FVT +    G    LRGCIG +EA   L       A+ +A  D R
Sbjct: 42  SSLNDPILNK-KGLAFVTLETY-YGNSTSLRGCIGYVEAVAPLKEIVSKAAIAAAFSDPR 99

Query: 82  FPPIQARELPSLECTVSILTDFETANNYLDWE------VGTHGLIIEFTDPEYSTRRSAT 135
           FPP+   E  ++   V++LT  +  +    WE      VG  GLI+E+         S  
Sbjct: 100 FPPLSKGEFDNIIIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEYGI-----LYSGL 154

Query: 136 YLPEVA 141
            LP+V 
Sbjct: 155 LLPQVP 160

>d1zq7a1 d.309.1.1 (A:1-199) Hypothetical protein MM0484 {Methanosarcina mazei [TaxId: 2209]} Length = 199

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein MM0484
species: Methanosarcina mazei [TaxId: 2209]

 Score =  104 bits (260), Expect = 2e-29
 Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 18/129 (13%)

Query: 22  SEDAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALKDR 80
           S     P F+E    +FVT  +   G    LRGCIG       L     D A+++A +D 
Sbjct: 33  SGVELSPVFEE-YRGVFVTLTE--GG---LLRGCIGHPYPDSTLKEAILDSAISAATRDP 86

Query: 81  RFPPIQARELPSLECTVSILTDFETANNYL-----DWEVGTHGLIIEFTDPEYSTRRSAT 135
           RFP ++  E+ ++   V+ILT  E  N          E+G HGLI++             
Sbjct: 87  RFPTVEQDEMKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQ------GYCQGL 140

Query: 136 YLPEVAAHE 144
            LP+VA   
Sbjct: 141 LLPQVAPEN 149

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	146
d1zq7a1	199	Hypothetical protein MM0484 {Methanosarcina mazei	100.0
d1vaja1	203	Hypothetical protein PH0010 {Archaeon Pyrococcus h	100.0
d1wsca1	225	Hypothetical protein ST0229 {Sulfolobus tokodaii [	100.0

>d1zq7a1 d.309.1.1 (A:1-199) Hypothetical protein MM0484 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein MM0484
species: Methanosarcina mazei [TaxId: 2209]

Probab=100.00  E-value=9.7e-49  Score=308.62  Aligned_cols=131  Identities=31%  Similarity=0.475  Sum_probs=119.0

Q ss_pred             chHHHHHHHHHHHHhhcCCCCCCCC-----CC---CCCCceEEEEEEecCCCCccceeeeccccc-ccHHHHHHHHHHHh
Q 032132            5 NREMAVYCFDTLVAHYNSEDAPPPA-----FD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTS   75 (146)
Q Consensus         5 ~~~l~~~ar~~i~~~l~~~~~~~~~-----~~---~~~~g~FVTl~~~~~g~~~~LRGCIGt~~p-~pL~~~i~~~A~~A   75 (146)
                      .+.|+.+||++|.++|++++.+.++     ++   +.++||||||++  +|   +||||||++.| +||+++|++||++|
T Consensus         7 ~~~Ll~lAR~ai~~~l~~~~~~~p~~~~~~~~~~l~~~~g~FVTL~~--~g---~LRGCIGs~~p~~pL~~~v~~~A~~A   81 (199)
T d1zq7a1           7 GRAAVKLARKTIEIFLSKGKSPRPDASGVELSPVFEEYRGVFVTLTE--GG---LLRGCIGHPYPDSTLKEAILDSAISA   81 (199)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCC---CCCCCCGGGGSBCCEEEEEEE--TT---EEEEEEEECSCCSBHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCCCcccccCChhHccceeEEEEEEE--CC---EEeEeecccCcchhHHHHHHHHHHHH
Confidence            4679999999999999877665332     22   578999999999  88   99999999999 79999999999999


Q ss_pred             hhcCCCCCCCCcCCCCCeeEEEEeecCceecCC-----CcCcccccceeEEEEecCCCCCCeeeeecCccccccCC
Q 032132           76 ALKDRRFPPIQARELPSLECTVSILTDFETANN-----YLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEEA  146 (146)
Q Consensus        76 A~~DpRF~Pl~~~El~~l~ieVSvL~~~e~~~~-----~~~~~~G~hGlii~~~~~~~~~~~~~~~LPqV~~E~~~  146 (146)
                      ||+||||+||+.+||++|.|+||||+++++++.     +.+|+||+|||+|++      |.++||||||||.||+|
T Consensus        82 A~~DpRF~pl~~~El~~l~ieVsvLs~~e~i~~~~~el~~~l~~g~~Glii~~------g~~~g~fLP~V~~e~~~  151 (199)
T d1zq7a1          82 ATRDPRFPTVEQDEMKNILVEVTILTQPEKINASPKELPDKVEIGKHGLIVKQ------GYCQGLLLPQVAPENDM  151 (199)
T ss_dssp             HHSCTTSCCCCGGGGGGCEEEEEEECCCEECCSCTTTHHHHCCTTTCEEEEEE------TTEEEEECTTHHHHTTC
T ss_pred             HhCCCCCCCCCHHHhcCCEEEEEECCCcEEccCChhhhHHHhccccceEEEEe------CCcceEECCcchhhcCC
Confidence            999999999999999999999999999999964     567999999999998      78999999999999998

>d1vaja1 d.309.1.1 (A:3-205) Hypothetical protein PH0010 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein PH0010
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=4.9e-48  Score=305.39  Aligned_cols=136  Identities=26%  Similarity=0.291  Sum_probs=118.7

Q ss_pred             chHHHHHHHHHHHHhhcCCCCCC--CCCC---CCCCceEEEEEEecCCCCccceeeeccccc-ccHHHHHHHHHHHhhhc
Q 032132            5 NREMAVYCFDTLVAHYNSEDAPP--PAFD---EGQHPLFVTWKKVVNGGEPRLRGCIGTLEA-RCLINGFKDYALTSALK   78 (146)
Q Consensus         5 ~~~l~~~ar~~i~~~l~~~~~~~--~~~~---~~~~g~FVTl~~~~~g~~~~LRGCIGt~~p-~pL~~~i~~~A~~AA~~   78 (146)
                      ...|+.+||++|+++|++++.++  .+++   ..+.||||||++...+.+++||||||+++| +||+++|++||++|||+
T Consensus         8 g~~Ll~lAR~ai~~~l~~g~~~~~~~~~~~~l~~~~g~FVTl~~~~~~~~g~LRGCIG~~~p~~pL~~~v~~~A~~AA~~   87 (203)
T d1vaja1           8 GEFLVRLARRAIEEYLKTGKEIEPPKDTPPELWEKMGVFVTLNRYNVPPQTALRGCIGFPTPIYPLVEATIKAAIYSAVD   87 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCCCCTTCCGGGGSBCEEEEEEEETTSCGGGTEEEEEEESSSCSBHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHccCCCCCCCccCCHHHcCceEEEEEEEEcccCCCCceeeeecccCCchhHHHHHHHHHHHHHhC
Confidence            35689999999999997665432  2232   578999999998421112399999999999 79999999999999999


Q ss_pred             CCCCCCCCcCCCCCeeEEEEeecCceecCC-----CcCcccccceeEEEEecCCCCCCeeeeecCccccccCC
Q 032132           79 DRRFPPIQARELPSLECTVSILTDFETANN-----YLDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEEA  146 (146)
Q Consensus        79 DpRF~Pl~~~El~~l~ieVSvL~~~e~~~~-----~~~~~~G~hGlii~~~~~~~~~~~~~~~LPqV~~E~~~  146 (146)
                      ||||+||+++||++|+|+||||++++++++     +.+|++|+|||||++      |.++||||||||.||||
T Consensus        88 DpRF~Pl~~~El~~l~ieVsvLs~~e~i~~~~~~~~~~~~~G~~Glii~~------g~~~g~fLP~Va~e~~w  154 (203)
T d1vaja1          88 DPRFPPVKLEEMDNLVVEVSVLTPPELIEGPPEERPRKIKVGRDGLIVEK------GIYSGLLLPQVPVEWGW  154 (203)
T ss_dssp             CTTSCCCCGGGGGGEEEEEEEECCCEECCSCGGGGGGGCCTTTCEEEEEE------TTEEEEECTHHHHHHTC
T ss_pred             CCCCCCCCHHHHcCcEEEEEECCCCEECCCCchhCHHHccCcceEEEEEe------CCcceEECCCcccccCC
Confidence            999999999999999999999999999973     567999999999999      78999999999999998

>d1wsca1 d.309.1.1 (A:3-227) Hypothetical protein ST0229 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: AMMECR1-like
superfamily: AMMECR1-like
family: AMMECR1-like
domain: Hypothetical protein ST0229
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=100.00  E-value=2.1e-46  Score=299.82  Aligned_cols=134  Identities=25%  Similarity=0.342  Sum_probs=118.1

Q ss_pred             chHHHHHHHHHHHHhhcCCCCCCC--------CCCCCCCceEEEEEEec--CCCCccceeeeccccc-ccHHHHHHHHHH
Q 032132            5 NREMAVYCFDTLVAHYNSEDAPPP--------AFDEGQHPLFVTWKKVV--NGGEPRLRGCIGTLEA-RCLINGFKDYAL   73 (146)
Q Consensus         5 ~~~l~~~ar~~i~~~l~~~~~~~~--------~~~~~~~g~FVTl~~~~--~g~~~~LRGCIGt~~p-~pL~~~i~~~A~   73 (146)
                      .+.|+.+||++|.++|.++..+.+        +..+.++||||||++..  +|   +||||||++.| +||+++|++||+
T Consensus        15 g~~Ll~lAR~aI~~~l~~~~~~~~~~~~~~~~~~L~~~~g~FVTl~~~~~~~g---~LRGCIGt~~~~~pL~~~v~~~A~   91 (225)
T d1wsca1          15 GKVLIKIARDSIANKLGILKINLEDYLSSLNDPILNKKGLAFVTLETYYGNST---SLRGCIGYVEAVAPLKEIVSKAAI   91 (225)
T ss_dssp             HHHHHHHHHHHHHHHHTCSCSCHHHHHHHCCCGGGGSEEEEEEEEEEECSSCE---EEEEEEEEEEEEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCCCCccccccccCchhhcCceeEEEEEEEccCCCC---ceeEEeccCCcchhHHHHHHHHHH
Confidence            356899999999999998875421        11267899999999752  56   99999999999 799999999999


Q ss_pred             HhhhcCCCCCCCCcCCCCCeeEEEEeecCceecCCC------cCcccccceeEEEEecCCCCCCeeeeecCccccccCC
Q 032132           74 TSALKDRRFPPIQARELPSLECTVSILTDFETANNY------LDWEVGTHGLIIEFTDPEYSTRRSATYLPEVAAHEEA  146 (146)
Q Consensus        74 ~AA~~DpRF~Pl~~~El~~l~ieVSvL~~~e~~~~~------~~~~~G~hGlii~~~~~~~~~~~~~~~LPqV~~E~~~  146 (146)
                      +|||+||||+||+.+||++|+|+||||+++++++..      .+++||+|||+|++     |..|+||||||||.||+|
T Consensus        92 ~AA~~DpRF~Pl~~~EL~~l~ieVsvLs~~e~i~~~~~~el~~~l~~G~hGlii~~-----g~~~~g~fLPqVa~e~~w  165 (225)
T d1wsca1          92 AAAFSDPRFPPLSKGEFDNIIIEVTVLTKPQEIDVENRWELPKKIKVGEDGLIVEY-----GILYSGLLLPQVPMEYCW  165 (225)
T ss_dssp             HHHHTCTTSCCCCHHHHTTEEEEEEEECCCEECCCSCGGGGGGGCCTTTCEEEEEE-----TTTEEEEECTHHHHHTTC
T ss_pred             HHHhCCCCcCCCCHHHHhCeEEEEEECCCCEECCCCChHHhHHhcCCCcceEEEEE-----CCcceEEECCCcccccCC
Confidence            999999999999999999999999999999999864      45679999999999     336999999999999998