Citrus Sinensis ID: 032152

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKEKAMGLHKIVEAHLLANPDLYA
Secondary Structure (PSIPRED)
cccEEEEEEEEEcccHHHHHHHHHHccccccccccccccEEEEEEccccccccEEEEEEEcccccEEEEEEEEEEEccccEEEEEEEEcccccccEEEEEEEEEEEEccccccEEEEEEEEEEccHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEcccHHHHHHHHcccHHHHHHHHccccccEEEEEEcccccccEEEEEccccccccEEEEEEEEEEccccEEEEEEEEEcccEccEEEEEEEEEEEEcccccEEEEEEEEEEEcccHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MGVMRFEKevsaavapsRMFKAFFLEAHNFLPKLVPQAIKSVEIlqgdggagsikitnfadggnfkyaKHRIdeldkdnfrckYTVIEGDMLGTILESIVYDvkfeasgnggsicKVASEFHTKEKAMGLHKIVEAHllanpdlya
Flexible Loop (DISEMBL)
mgvmrfekevsaavapSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRideldkdnfRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKEKAMGLHKIVEahllanpdlya
Low Complexity Region (SEG)
MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKEKAMGLHKIVEAHLLANPDLYA
Disordered region (IsUnstruct)
*************VAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKEKAMGLHKIVEAHLLA******
Disordered Region (DISOPRED)
*GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKEKAMGLHKIVEAHLLANPDLYA
Disordered Region (DISEMBL)
************AVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKEKAMGLHKIVEAHLLANPDLYA
Disordered Region (DISPRO)
*GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKEKAMGLHKIVEAHLLANPDLYA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTKEKAMGLHKIVEAHLLANPDLYA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	146	2.2.26 [Sep-21-2011]
O50001	160	Major allergen Pru ar 1 O	N/A	no	0.993	0.906	0.490	4e-41
O24248	160	Major allergen Pru av 1 O	N/A	no	0.993	0.906	0.471	2e-37
Q40280	159	Major allergen Mal d 1 OS	N/A	no	0.986	0.905	0.459	6e-35
P17642	155	Pathogenesis-related prot	N/A	no	0.965	0.909	0.475	2e-34
P43211	159	Major allergen Mal d 1 OS	N/A	no	0.986	0.905	0.452	5e-34
P17641	155	Pathogenesis-related prot	N/A	no	0.965	0.909	0.475	9e-34
O65200	159	Major allergen Pyr c 1 OS	N/A	no	0.986	0.905	0.440	3e-33
P38948	160	Major pollen allergen Aln	N/A	no	0.993	0.906	0.427	1e-32
P43186	160	Major pollen allergen Bet	N/A	no	0.993	0.906	0.427	1e-32
P43176	160	Major pollen allergen Bet	N/A	no	0.993	0.906	0.427	2e-32

>sp|O50001|PRU1_PRUAR Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 SV=1

 Score =  166 bits (421), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/159 (49%), Positives = 103/159 (64%), Gaps = 14/159 (8%)

Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MGV  +E E ++ + P ++FKAF L+A N +PK+ P A+K  EIL+GDGG G+IK   F 
Sbjct: 1   MGVFTYETEFTSVIPPEKLFKAFILDADNLIPKVAPTAVKGTEILEGDGGVGTIKKVTFG 60

Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           +G  + Y KHR+D +DKDN    YT+IEGD L  ++E+I YD+K  AS +GGSI K  S 
Sbjct: 61  EGSQYAYVKHRVDGIDKDNLSYSYTLIEGDALSDVIENIAYDIKLVASPDGGSIVKTTSH 120

Query: 121 FHT--------------KEKAMGLHKIVEAHLLANPDLY 145
           +HT              KEKA GL K+VEA+LLANPD Y
Sbjct: 121 YHTKGDVEIKEEQVKAGKEKAAGLFKLVEAYLLANPDAY 159

Prunus armeniaca (taxid: 36596)

>sp|O24248|PRU1_PRUAV Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 PE=1 SV=1

 Score =  154 bits (389), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/159 (47%), Positives = 99/159 (62%), Gaps = 14/159 (8%)

Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MGV  +E E ++ + P R+FKAF L+A N +PK+ PQAIK  EIL+GDGG G+IK   F 
Sbjct: 1   MGVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFG 60

Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           +G  + Y KH+ID +DK+N+   YT+IEGD LG  LE I Y+ K  AS +GGSI K  S 
Sbjct: 61  EGSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSH 120

Query: 121 FHT--------------KEKAMGLHKIVEAHLLANPDLY 145
           +HT              KEKA  L K++E +L  +PD Y
Sbjct: 121 YHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAY 159

Prunus avium (taxid: 42229)

>sp|Q40280|MAL12_MALDO Major allergen Mal d 1 OS=Malus domestica PE=1 SV=3

 Score =  145 bits (367), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 73/159 (45%), Positives = 99/159 (62%), Gaps = 15/159 (9%)

Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MGV  FE E ++ + P R+FKAF L+A N +PK+ PQAIK  EIL+GDGG G+IK   F 
Sbjct: 1   MGVYTFENEYTSEIPPPRLFKAFVLDADNLIPKIAPQAIKHAEILEGDGGPGTIKKITFG 60

Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           +G  + Y KH+ID +D+ N+   YT+IEGD L   +E + Y+ K  ASG+ GSI K  S 
Sbjct: 61  EGSQYGYVKHKIDSVDEANYSYAYTLIEGDALTDTIEKVSYETKLVASGS-GSIIKSISH 119

Query: 121 FHT--------------KEKAMGLHKIVEAHLLANPDLY 145
           +HT              KEKA GL K++E++L  +PD Y
Sbjct: 120 YHTKGDVEIKEEHVKAGKEKAHGLFKLIESYLKGHPDAY 158

Malus domestica (taxid: 3750)

>sp|P17642|PRS2_SOLTU Pathogenesis-related protein STH-2 OS=Solanum tuberosum GN=STH-2 PE=2 SV=1

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 104/160 (65%), Gaps = 19/160 (11%)

Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MGV  +  E +  +AP+R+FKA  +++ N +PKL+PQ +K++E  +GDG   SIK  NF 
Sbjct: 1   MGVTSYTHETTTPIAPTRLFKALVVDSDNLIPKLMPQ-VKNIEA-EGDG---SIKKMNFV 55

Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           +G   KY KH+I  +D  N   KY++IEGD+LG  LESI YD+KFEA GNGG +CK  +E
Sbjct: 56  EGSPIKYLKHKIHVVDDKNLVTKYSMIEGDVLGDKLESISYDLKFEAHGNGGCVCKSITE 115

Query: 121 FHTK--------------EKAMGLHKIVEAHLLANPDLYA 146
           +HTK              ++ M L KIVEA+LLANP +YA
Sbjct: 116 YHTKGDYVLKDEEHNEGQKQGMELFKIVEAYLLANPSVYA 155

Solanum tuberosum (taxid: 4113)

>sp|P43211|MAL11_MALDO Major allergen Mal d 1 OS=Malus domestica GN=MALD1 PE=1 SV=2

 Score =  142 bits (359), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 72/159 (45%), Positives = 99/159 (62%), Gaps = 15/159 (9%)

Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MGV  FE E ++ + PSR+FKAF L+A N +PK+ PQAIK  EIL+G+GG G+IK   F 
Sbjct: 1   MGVYTFENEFTSEIPPSRLFKAFVLDADNLIPKIAPQAIKQAEILEGNGGPGTIKKITFG 60

Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           +G  + Y KHRID +D+ ++   YT+IEGD L   +E I Y+ K  A G+G +I K  S 
Sbjct: 61  EGSQYGYVKHRIDSIDEASYSYSYTLIEGDALTDTIEKISYETKLVACGSGSTI-KSISH 119

Query: 121 FHT--------------KEKAMGLHKIVEAHLLANPDLY 145
           +HT              KEKA GL K++E++L  +PD Y
Sbjct: 120 YHTKGNIEIKEEHVKVGKEKAHGLFKLIESYLKDHPDAY 158

Malus domestica (taxid: 3750)

>sp|P17641|PRS1_SOLTU Pathogenesis-related protein STH-21 OS=Solanum tuberosum GN=STH-21 PE=2 SV=1

 Score =  142 bits (357), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 103/160 (64%), Gaps = 19/160 (11%)

Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MGV  +  E +  VAP+R+FKA  +++ N +PKL+PQ +K++E  +GDG   SIK   F 
Sbjct: 1   MGVTSYTLETTTPVAPTRLFKALVVDSDNLIPKLMPQ-VKNIEA-EGDG---SIKKMTFV 55

Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           +G   KY KH+I  +D  N   KY++IEGD+LG  LESI YD+KFEA GNGG +CK  +E
Sbjct: 56  EGSPIKYLKHKIHVVDDKNLVTKYSMIEGDVLGDKLESISYDLKFEAHGNGGCVCKSIAE 115

Query: 121 FHT--------------KEKAMGLHKIVEAHLLANPDLYA 146
           +HT              K++ M L KIVEA+LLANP +YA
Sbjct: 116 YHTKGDYVLKDEDHNEGKKQGMELFKIVEAYLLANPSVYA 155

Solanum tuberosum (taxid: 4113)

>sp|O65200|PYRC1_PYRCO Major allergen Pyr c 1 OS=Pyrus communis GN=PYRC1 PE=1 SV=1

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 99/159 (62%), Gaps = 15/159 (9%)

Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MG+  FE E ++ + P R+FKAF L+A N +PK+ PQAIK  EIL+G+GG G+IK   F 
Sbjct: 1   MGLYTFENEFTSEIPPPRLFKAFVLDADNLIPKIAPQAIKHAEILEGNGGPGTIKKITFG 60

Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           +G  + Y KHR+D +D+ ++   YT+IEGD L   +E I Y+ K  ASG+G +I K  S 
Sbjct: 61  EGSQYGYVKHRVDSIDEASYSYAYTLIEGDALTDTIEKISYEAKLVASGSGSTI-KSISH 119

Query: 121 FHT--------------KEKAMGLHKIVEAHLLANPDLY 145
           +HT              KEKA GL K++E++L  +PD Y
Sbjct: 120 YHTKGDIEIKEEHVKAGKEKAHGLFKLIESYLKDHPDAY 158

Pyrus communis (taxid: 23211)

>sp|P38948|MPAG1_ALNGL Major pollen allergen Aln g 1 OS=Alnus glutinosa PE=1 SV=2

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/159 (42%), Positives = 102/159 (64%), Gaps = 14/159 (8%)

Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MGV  +E E  + +  +R+FKAF L+    LPK+ P+A+ SVE ++G+GG G+IK   F 
Sbjct: 1   MGVFNYEAETPSVIPAARLFKAFILDGDKLLPKVAPEAVSSVENIEGNGGPGTIKKITFP 60

Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           +G  FKY K R+DE+D+ NF+  ++VIEG  +G  LE +  ++K  A+ +GGSI K++++
Sbjct: 61  EGSPFKYVKERVDEVDRVNFKYSFSVIEGGAVGDALEKVCNEIKIVAAPDGGSILKISNK 120

Query: 121 FHT--------------KEKAMGLHKIVEAHLLANPDLY 145
           FHT              KEKA+GL K VE++LLA+ D Y
Sbjct: 121 FHTKGDHEINAEQIKIEKEKAVGLLKAVESYLLAHSDAY 159

Alnus glutinosa (taxid: 3517)

>sp|P43186|BEV1M_BETPN Major pollen allergen Bet v 1-M/N OS=Betula pendula GN=BETV1M PE=1 SV=2

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/159 (42%), Positives = 100/159 (62%), Gaps = 14/159 (8%)

Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MGV  +E E ++ +  +R+FKAF L+  N +PK+ PQAI SVE ++G+GG G+IK   F 
Sbjct: 1   MGVFNYESETTSVIPAARLFKAFILDGDNLIPKVAPQAISSVENIEGNGGPGTIKKITFP 60

Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           +G  FKY K R+DE+D  NF+  Y++IEG  LG  LE I  ++K  A+ +GGSI K++++
Sbjct: 61  EGSPFKYVKERVDEVDHANFKYSYSMIEGGALGDTLEKICNEIKIVATPDGGSILKISNK 120

Query: 121 FHT--------------KEKAMGLHKIVEAHLLANPDLY 145
           +HT              KEK   L + VE++LLA+ D Y
Sbjct: 121 YHTKGDHEMKAEHMKAIKEKGEALLRAVESYLLAHSDAY 159

May be a general steroid carrier protein.

Betula pendula (taxid: 3505)

>sp|P43176|BEV1C_BETPN Major pollen allergen Bet v 1-C OS=Betula pendula GN=BETV1C PE=1 SV=2

 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/159 (42%), Positives = 99/159 (62%), Gaps = 14/159 (8%)

Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MGV  +E E ++ +  +R+FKAF LE    +PK+ PQAI SVE ++G+GG G+IK   F 
Sbjct: 1   MGVFNYESETTSVIPAARLFKAFILEGDTLIPKVAPQAISSVENIEGNGGPGTIKKITFP 60

Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           +G  FKY K R+DE+D  NF+  Y++IEG  LG  LE I  ++K  A+ +GGSI K++++
Sbjct: 61  EGSPFKYVKERVDEVDHANFKYSYSMIEGGALGDTLEKICNEIKIVATPDGGSILKISNK 120

Query: 121 FHT--------------KEKAMGLHKIVEAHLLANPDLY 145
           +HT              KEK   L + VE++LLA+ D Y
Sbjct: 121 YHTKGDQEMKAEHMKAIKEKGEALLRAVESYLLAHSDAY 159

May be a general steroid carrier protein.

Betula pendula (taxid: 3505)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
359477159	159	PREDICTED: pathogenesis-related protein	0.993	0.911	0.543	1e-44
359479932	204	PREDICTED: LOW QUALITY PROTEIN: major al	0.945	0.676	0.536	4e-42
147777970	159	hypothetical protein VITISV_007417 [Viti	0.993	0.911	0.534	7e-42
388501186	160	unknown [Lotus japonicus]	1.0	0.912	0.506	1e-41
147853972	159	hypothetical protein VITISV_025732 [Viti	0.993	0.911	0.528	2e-41
225431838	159	PREDICTED: major allergen Pru ar 1 [Viti	0.993	0.911	0.534	2e-41
225431840	159	PREDICTED: major allergen Pru ar 1 [Viti	0.993	0.911	0.528	3e-41
351726706	160	uncharacterized protein LOC100500506 [Gl	1.0	0.912	0.506	7e-41
359477230	160	PREDICTED: pathogenesis-related protein	0.979	0.893	0.509	8e-41
388509642	160	unknown [Medicago truncatula]	1.0	0.912	0.506	9e-41

>gi|359477159|ref|XP_002273815.2| PREDICTED: pathogenesis-related protein STH-2 [Vitis vinifera] gi|147853968|emb|CAN79554.1| hypothetical protein VITISV_025728 [Vitis vinifera] gi|296083307|emb|CBI22943.3| unnamed protein product [Vitis vinifera]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/160 (54%), Positives = 120/160 (75%), Gaps = 15/160 (9%)

Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MGV  F +E +  +APSR+FKA  L+++N +PKL+PQ I+S++++QGDGGAG+I+  NF 
Sbjct: 1   MGVTSFTQEFTCPIAPSRIFKALILDSNNLIPKLLPQTIRSIDVVQGDGGAGTIEQVNFT 60

Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           +  N KY KH+I+ELDK+NF CKY +IEGD+LG  LESI ++VKFEA+ +GGSICK+ASE
Sbjct: 61  EASNLKYVKHQIEELDKENFVCKYRMIEGDVLGEELESIAHEVKFEAA-DGGSICKMASE 119

Query: 121 FHTKEK--------------AMGLHKIVEAHLLANPDLYA 146
           +HTK K              AMG++K+VEA+LL NP +YA
Sbjct: 120 YHTKGKFEIKEEEIKAGKARAMGIYKVVEAYLLENPHVYA 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479932|ref|XP_003632378.1| PREDICTED: LOW QUALITY PROTEIN: major allergen Pru ar 1-like [Vitis vinifera]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 81/151 (53%), Positives = 113/151 (74%), Gaps = 13/151 (8%)

Query: 8   KEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKY 67
           +E++  +AP+ MFKA  +++HN +P L+P +IKS+E ++GDGG GSIK TNF +G +FKY
Sbjct: 55  QEITTPIAPAIMFKALIVDSHNLVPTLMP-SIKSIEFVEGDGGVGSIKQTNFPEGSHFKY 113

Query: 68  AKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT---- 123
            KHRID +D DN+ CKYT+IEG++LG  LESI Y+VKFEASG+G S+CK+ S +H+    
Sbjct: 114 LKHRIDAIDHDNYSCKYTLIEGEVLGDTLESISYEVKFEASGSGSSVCKMTSHYHSKIEL 173

Query: 124 --------KEKAMGLHKIVEAHLLANPDLYA 146
                   K+KAMG++K+V  +LLANPD YA
Sbjct: 174 KDEDIKTGKDKAMGMYKVVGEYLLANPDAYA 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777970|emb|CAN67367.1| hypothetical protein VITISV_007417 [Vitis vinifera]

 Score =  174 bits (442), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 85/159 (53%), Positives = 111/159 (69%), Gaps = 14/159 (8%)

Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MGV+ +E E+ +++ P+++FKAF L++ N +PK++PQAIK VEI++GDGG GSIK   F 
Sbjct: 1   MGVISYEHEIISSIPPAKIFKAFILDSDNLIPKVLPQAIKCVEIIEGDGGPGSIKKITFG 60

Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           +G  F Y KHR+D +DK+NF   Y++IEGD L   LESI Y+VK  AS NGGSICK  S+
Sbjct: 61  EGSQFNYVKHRVDGIDKENFTYSYSLIEGDALMGTLESISYEVKLVASPNGGSICKSTSK 120

Query: 121 FHT--------------KEKAMGLHKIVEAHLLANPDLY 145
           +HT              KEKAMGL K VEA+LLANPD Y
Sbjct: 121 YHTKGDFEITEDQIKAGKEKAMGLFKAVEAYLLANPDAY 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501186|gb|AFK38659.1| unknown [Lotus japonicus]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/160 (50%), Positives = 112/160 (70%), Gaps = 14/160 (8%)

Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MGV  F  E S+++APSRMFKA  +++ N +PKL+PQ +K V+++QG+G AGSI+  NF 
Sbjct: 1   MGVTTFTHEFSSSIAPSRMFKALIIDSKNLIPKLLPQFVKDVQVIQGEGEAGSIEQVNFN 60

Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           +   FKY K RIDE+DK+NF CKYT+IEGD LG  LESI Y+VKFEA+ +GG +CK+ S 
Sbjct: 61  EASPFKYLKQRIDEVDKENFICKYTMIEGDPLGDKLESIAYEVKFEATSDGGCLCKMTSH 120

Query: 121 FHT--------------KEKAMGLHKIVEAHLLANPDLYA 146
           + T              KE  +G++K+VE++LL NP +YA
Sbjct: 121 YKTNGDFEVQEEQVKEGKESTIGIYKVVESYLLENPQVYA 160

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853972|emb|CAN79558.1| hypothetical protein VITISV_025732 [Vitis vinifera]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/159 (52%), Positives = 110/159 (69%), Gaps = 14/159 (8%)

Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MGV+ +E E ++++ P++MFKAF L++   +PK++PQAIKS EI++GDGG GSIK   F 
Sbjct: 1   MGVITYEHEXTSSIPPAKMFKAFILDSDKLIPKILPQAIKSTEIIEGDGGPGSIKKITFG 60

Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           +G  F Y KHR+D +DK+NF   Y+VIEGD L   LESI Y+VK  AS +GGSICK  S+
Sbjct: 61  EGSQFNYVKHRVDGIDKENFTYSYSVIEGDALMGTLESISYEVKLVASPSGGSICKSTSK 120

Query: 121 FHT--------------KEKAMGLHKIVEAHLLANPDLY 145
           +HT              KEKA+GL K VEA+LLANPD Y
Sbjct: 121 YHTKGDFEITEDQIKAGKEKALGLFKAVEAYLLANPDAY 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431838|ref|XP_002273952.1| PREDICTED: major allergen Pru ar 1 [Vitis vinifera] gi|296083304|emb|CBI22940.3| unnamed protein product [Vitis vinifera]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/159 (53%), Positives = 110/159 (69%), Gaps = 14/159 (8%)

Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MG + +E EV++++ P++MFKAF L+  N +PK++PQAIK VEI++GDGG G+IK  NF 
Sbjct: 1   MGAITYEMEVTSSIPPAKMFKAFVLDVDNLIPKVLPQAIKCVEIIEGDGGPGTIKKINFG 60

Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           +G  F Y KH ID LDK+NF   YT+IEGD L   LESI Y+VK  AS +GGSICK  S+
Sbjct: 61  EGSQFNYVKHWIDSLDKENFTYCYTIIEGDALMDNLESIYYEVKLVASPDGGSICKNISK 120

Query: 121 FHT--------------KEKAMGLHKIVEAHLLANPDLY 145
           +HT              KEKAMG+ K +EA+LLANPD Y
Sbjct: 121 YHTKGDIQITEDQIKAGKEKAMGMFKAIEAYLLANPDAY 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431840|ref|XP_002273982.1| PREDICTED: major allergen Pru ar 1 [Vitis vinifera] gi|296083303|emb|CBI22939.3| unnamed protein product [Vitis vinifera]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 84/159 (52%), Positives = 111/159 (69%), Gaps = 14/159 (8%)

Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MGV+ +E E+ +++ P+++FKAF L++ N +PK++PQAIK VEI++GDGG GSIK   F 
Sbjct: 1   MGVISYEHEIISSIPPAKIFKAFILDSDNLIPKVLPQAIKCVEIIEGDGGPGSIKKITFG 60

Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           +G  F Y KHR+D +DK+NF   Y+VIEGD L   LESI Y+VK  AS +GGSICK  S+
Sbjct: 61  EGSQFNYVKHRVDGIDKENFTYSYSVIEGDALMGTLESISYEVKLVASPSGGSICKSTSK 120

Query: 121 FHT--------------KEKAMGLHKIVEAHLLANPDLY 145
           +HT              KEKA+GL K VEA+LLANPD Y
Sbjct: 121 YHTKGDFEITEDQIKAGKEKALGLFKAVEAYLLANPDAY 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726706|ref|NP_001235344.1| uncharacterized protein LOC100500506 [Glycine max] gi|255630496|gb|ACU15606.1| unknown [Glycine max]

 Score =  171 bits (434), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 81/160 (50%), Positives = 110/160 (68%), Gaps = 14/160 (8%)

Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MGV  F +E S++VAPSRMFKA  +++ N LPKL+PQ +K V + QGDG AGSI+  NF 
Sbjct: 1   MGVTTFTQEYSSSVAPSRMFKALIVDSRNLLPKLLPQFVKDVNVTQGDGEAGSIEQVNFN 60

Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           +   FKY KHRID LDKDN  CKYT+IEGD LG  L+SI Y+VKFEA+ +GG +CK+ S 
Sbjct: 61  EASPFKYLKHRIDVLDKDNLVCKYTMIEGDPLGDKLDSIGYEVKFEATSDGGCLCKMTSN 120

Query: 121 FHT--------------KEKAMGLHKIVEAHLLANPDLYA 146
           ++T              +E  + ++++VE++LL NP +YA
Sbjct: 121 YNTIGEIDVKEEEVKEGRESGIAVYRVVESYLLENPQVYA 160

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477230|ref|XP_002271428.2| PREDICTED: pathogenesis-related protein STH-2 [Vitis vinifera] gi|296083294|emb|CBI22930.3| unnamed protein product [Vitis vinifera]

 Score =  171 bits (433), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 80/157 (50%), Positives = 113/157 (71%), Gaps = 14/157 (8%)

Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MGV  F +E    V+P+RMFKA  +++H  +P+LVP+++KS+E ++GDGGAGSI  TNF+
Sbjct: 1   MGVTTFTQEFVTPVSPARMFKALVVDSHILVPRLVPESVKSIEFVEGDGGAGSITQTNFS 60

Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
              + +Y K++I+ +DK+   C+YT+IEG +LG  LESIVY++KFE SG+GG ICK  SE
Sbjct: 61  GDSDCEYLKYKINAVDKEKLECRYTLIEGGVLGDQLESIVYEMKFEESGDGGCICKTRSE 120

Query: 121 FHT--------------KEKAMGLHKIVEAHLLANPD 143
           +HT              KEKAMG++K+VEA+LLANPD
Sbjct: 121 YHTKGEFEIKEESIREGKEKAMGVYKLVEAYLLANPD 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509642|gb|AFK42887.1| unknown [Medicago truncatula]

 Score =  171 bits (433), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 81/160 (50%), Positives = 110/160 (68%), Gaps = 14/160 (8%)

Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MGV  F  E S+ VAPSRMF A  +++ N +PKL+PQ +K V I++GDGGAGSI+  NF 
Sbjct: 1   MGVTTFTHEYSSTVAPSRMFTALIIDSRNLIPKLLPQFVKDVNIIEGDGGAGSIEQVNFN 60

Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           +G  FKY K +ID LDK+N  CKYT+IEGD LG  LESI Y+VKFEA+ +GG +CK+AS 
Sbjct: 61  EGSPFKYLKQKIDVLDKENLICKYTMIEGDPLGDKLESIAYEVKFEATNDGGCLCKMASS 120

Query: 121 FHT--------------KEKAMGLHKIVEAHLLANPDLYA 146
           + T              +E  +G++++VE++LL NP +YA
Sbjct: 121 YKTIGDFDVKEEDVKEGRESTIGIYEVVESYLLENPQVYA 160

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
TAIR|locus:2199932	155	MLP423 "MLP-like protein 423"	0.856	0.806	0.314	3.2e-10
TAIR|locus:2143809	166	AT5G28010 "AT5G28010" [Arabido	0.808	0.710	0.262	2.3e-07
TAIR|locus:2013950	158	MLP43 "AT1G70890" [Arabidopsis	0.931	0.860	0.264	3.8e-07
TAIR|locus:2013920	159	AT1G70880 "AT1G70880" [Arabido	0.609	0.559	0.290	4.8e-07
TAIR|locus:2013930	316	MLP34 "AT1G70850" [Arabidopsis	0.904	0.417	0.285	1.1e-06
TAIR|locus:2013970	171	MLP31 "AT1G70840" [Arabidopsis	0.739	0.631	0.276	2.1e-06
TAIR|locus:2143804	164	AT5G28000 "AT5G28000" [Arabido	0.815	0.725	0.247	3.4e-06
TAIR|locus:2014000	335	MLP28 "AT1G70830" [Arabidopsis	0.952	0.414	0.259	1.5e-05
TAIR|locus:2006832	153	AT1G14960 "AT1G14960" [Arabido	0.821	0.784	0.263	3.4e-05
TAIR|locus:2201200	148	AT1G23120 "AT1G23120" [Arabido	0.582	0.574	0.304	0.00038

TAIR|locus:2199932 MLP423 "MLP-like protein 423" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 45/143 (31%), Positives = 72/143 (50%)

Query:     2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGA-GSIKITNFA 60
             GV+  E EV +   P+  F     +  N  PK  P   K++++L GDG A GSI++  + 
Sbjct:     5 GVLHVEVEVKS---PAEKFWVALGDGINLFPKAFPNDYKTIQVLAGDGNAPGSIRLITYG 61

Query:    61 DGGNF-KYAKHRIDELDKDNFRCKYTVIEGDMLG---TILESIVYDVKFEASGNGGSICK 116
             +G    K +  RI+ +D +N    Y++I G+ML    T   +I    K     +GGS+ K
Sbjct:    62 EGSPLVKISAERIEAVDLENKSMSYSIIGGEMLEYYKTFKGTITVIPK-----DGGSLLK 116

Query:   117 VASEFHTKEKAMGLHKIVEAHLL 139
              + EF   EK    H+I + H++
Sbjct:   117 WSGEF---EKTA--HEIDDPHVI 134

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2143809 AT5G28010 "AT5G28010" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 32/122 (26%), Positives = 58/122 (47%)

Query:     1 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGA-GSIKITNF 59
             +G +  E E+ A   P+ +F   +    + + K  P+ ++S ++  G+ G  GSI   N+
Sbjct:    16 LGKLEVEVEIKA---PAAIFYHIYAGRPHHVAKATPRNVQSCDLHDGEWGTVGSIVYWNY 72

Query:    60 ADGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVAS 119
                G  K AK RI+ ++ +    K+ VIEGD++      ++        G  GS+ K   
Sbjct:    73 VHEGQAKVAKERIELVEPEKKLIKFRVIEGDVMAEYKSFLITIQVTPKEGGTGSVVKWHI 132

Query:   120 EF 121
             E+
Sbjct:   133 EY 134

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2013950 MLP43 "AT1G70890" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 40/151 (26%), Positives = 69/151 (45%)

Query:     3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGG-AGSIKITNFAD 61
             V + E EV    A ++ F   F E  + + K  P  I   E+ +GD G  GSI I  +  
Sbjct:     8 VGKLETEVEIK-ASAKKFHHMFTERPHHVSKATPDKIHGCELHEGDWGKVGSIVIWKYVH 66

Query:    62 GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEAS-GNGGSIC----- 115
              G     K++I+ +D +     + V+EGD++    +S  + ++     G  GSI      
Sbjct:    67 DGKLTVGKNKIEAVDPEKNLITFKVLEGDLMNEY-KSFAFTLQVTPKQGESGSIAHWHLE 125

Query:   116 --KVASEF-HTK---EKAMGLHKIVEAHLLA 140
               K++ E  H +   +  + + K ++ HLLA
Sbjct:   126 YEKISEEVAHPETLLQFCVEISKEIDEHLLA 156

GO:0003674 "molecular_function" evidence=ND

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2013920 AT1G70880 "AT1G70880" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 27/93 (29%), Positives = 48/93 (51%)

Query:     1 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD-GGAGSIKITNF 59
             +G++    E+ ++V     F    +   + +    P  I+S E+ +G+ G  G++ + N+
Sbjct:     9 VGIVETTVELKSSV---EKFHDLLVGRPHHMSNATPSNIQSAELQEGEMGQVGAVILWNY 65

Query:    60 ADGGNFKYAKHRIDELDKDNFRCKYTVIEGDML 92
                G  K AK RI+ LD +  R  Y V+EGD+L
Sbjct:    66 VHDGEAKSAKQRIESLDPEKNRITYRVVEGDLL 98

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2013930 MLP34 "AT1G70850" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 42/147 (28%), Positives = 69/147 (46%)

Query:     7 EKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGA-GSIKITNFADGGNF 65
             E EV    +  +    F  + H+ + K  P  I+S ++ +GD G  GSI   N+   G  
Sbjct:   170 ETEVEIKASAEKFHHMFAGKPHH-VSKATPGNIQSCDLHEGDWGTVGSIVFWNYVHDGEA 228

Query:    66 KYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEAS-GNGGSIC-------KV 117
             K AK RI+ +D +     + VIEGD++    +S V  ++     G  GS+        K+
Sbjct:   229 KVAKERIEAVDPEKNLITFRVIEGDLMKEY-KSFVITIQVTPKHGGSGSVVHWHFEYEKI 287

Query:   118 ASEF-HTK---EKAMGLHKIVEAHLLA 140
               E  H +   + A+ + K ++ HLLA
Sbjct:   288 NEEVAHPETLLQFAVEVSKEIDEHLLA 314

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2013970 MLP31 "AT1G70840" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 31/112 (27%), Positives = 52/112 (46%)

Query:     5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGG-AGSIKITNFADGG 63
             + E ++    +  +    F    H+ + K  P  I+  E+ +GD G  GSI   N+   G
Sbjct:    23 KLETDIEIKASAGKFHHMFAGRPHH-VSKATPGKIQGCELHEGDWGKVGSIVFWNYVHDG 81

Query:    64 NFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNG-GSI 114
               K AK RI+ ++ +     + VIEGD+L    +S V  ++      G GS+
Sbjct:    82 EAKVAKERIEAVEPEKNLITFRVIEGDLLKEY-KSFVITIQVTPKRGGPGSV 132

GO:0003674 "molecular_function" evidence=ND

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2143804 AT5G28000 "AT5G28000" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 30/121 (24%), Positives = 55/121 (45%)

Query:     7 EKEVSAAV-APSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGA-GSIKITNFADGGN 64
             E EV   + +P+  F   ++   + + K     +++ ++L+G+ G   SI   N+   G 
Sbjct:    16 EVEVEVDIKSPAEKFYQVYVGRPDHVAKATSSKVQACDLLEGEWGTISSIVNWNYVYAGK 75

Query:    65 FKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTK 124
              K AK RI+ ++ +    K+ VIEGD+L       +        G  GS+ K   E+   
Sbjct:    76 AKVAKERIELVEPEKKLIKFRVIEGDVLAVYKNFFITISVTPKEGGVGSVAKWHLEYEKN 135

Query:   125 E 125
             +
Sbjct:   136 D 136

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

TAIR|locus:2014000 MLP28 "AT1G70830" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 40/154 (25%), Positives = 71/154 (46%)

Query:     3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGA-GSIKITNFAD 61
             V + E +V    +  +    F  + H+ + K  P  I+  ++ +GD G  GSI   N+  
Sbjct:    23 VGKLETDVEIKASADKFHHMFAGKPHH-VSKASPGNIQGCDLHEGDWGTVGSIVFWNYVH 81

Query:    62 GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNG-GSIC----- 115
              G  K AK RI+ ++ D     + VIEGD++    +S +  ++      G GSI      
Sbjct:    82 DGEAKVAKERIEAVEPDKNLITFRVIEGDLMKEY-KSFLLTIQVTPKPGGPGSIVHWHLE 140

Query:   116 --KVASEF-HTK---EKAMGLHKIVEAHLLANPD 143
               K++ E  H +   +  + + K ++ HLLA  +
Sbjct:   141 YEKISEEVAHPETLLQFCVEVSKEIDEHLLAEEE 174

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2006832 AT1G14960 "AT1G14960" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 34/129 (26%), Positives = 62/129 (48%)

Query:    20 FKAFFLEAHNFLPKLVPQAIKSVEILQGDGGA-GSIKITNFADGGNFKYAKHRIDELDKD 78
             +K +  E H  +P+ +   I+ V +  GD  + G+IKI N+   G  +  K RI E+D +
Sbjct:    21 YKRWRSENH-LVPEAIGHLIQGVTVHDGDWDSHGTIKIWNYTRDGKEEVLKERI-EMDDE 78

Query:    79 NFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVAS--EFHTKEKAMGLH--KIV 134
             N       ++G ++  +L+  V  + F      G +CK+    E  T++    +   K V
Sbjct:    79 NMAVTINGLDGHVM-EVLKVYVTTLHFIPESKDGCVCKITMVWEKRTEDSPEPIEFMKFV 137

Query:   135 EAHLLANPD 143
             E  ++A+ D
Sbjct:   138 E-QMIAHMD 145

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

GO:0016126 "sterol biosynthetic process" evidence=RCA

TAIR|locus:2201200 AT1G23120 "AT1G23120" [Arabidopsis thaliana (taxid:3702)]

 Score = 96 (38.9 bits), Expect = 0.00038, P = 0.00038
 Identities = 28/92 (30%), Positives = 45/92 (48%)

Query:     2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGS-IKITNFA 60
             GV   E E+   +   R FK F  +  NF  K      ++V + + D  + S I+I NF 
Sbjct:     3 GVQTLELEIQVNMTAERFFKTFKKKEGNFTDKT-----EAVYVHRDDPTSNSSIQIWNFI 57

Query:    61 DGGNFKYAKHRIDELDKDNFRCKYTVIEGDML 92
               G  +  K +ID +D++N    +  +EGD+L
Sbjct:    58 VDGKMEQIKEKID-VDEENKSVSFLALEGDVL 88

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	PR10.8	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (159 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00033091001	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (357 aa)							•		0.483
	GSVIVG00033064001	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (288 aa)							•		0.483

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	146
cd07816	148	cd07816, Bet_v1-like, Ligand-binding bet_v_1 domai	8e-52
pfam00407	150	pfam00407, Bet_v_1, Pathogenesis-related protein B	2e-34
smart01037	151	smart01037, Bet_v_1, Pathogenesis-related protein	1e-11
cd07821	140	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance	6e-07

>gnl|CDD|176858 cd07816, Bet_v1-like, Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

 Score =  161 bits (409), Expect = 8e-52
 Identities = 64/147 (43%), Positives = 85/147 (57%), Gaps = 15/147 (10%)

Query: 6   FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNF 65
            E EV   V   +++KAF L++H   PKL P  IKSVE+L+GDGG GSIK+  F  GG  
Sbjct: 3   LEHEVELKVPAEKLWKAFVLDSHLLPPKL-PPVIKSVELLEGDGGPGSIKLITFGPGGKV 61

Query: 66  KYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTK- 124
           KY K RID +D++N   KYTVIEGD+L    +S   ++KF   G+GG + K   E+  K 
Sbjct: 62  KYVKERIDAVDEENKTYKYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKG 121

Query: 125 -------------EKAMGLHKIVEAHL 138
                        EKA+ + K VEA+L
Sbjct: 122 DAEPPEEEIKAGKEKALKMFKAVEAYL 148

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianthrone hypericin. NCSs catalyze the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. The role of MLPs is unclear; however, they are associated with fruit and flower development and in pathogen defense responses. A number of PR-10 proteins in this subgroup, including Bet v 1, have in vitro RNase activity, the biological significance of which is unclear. Bet v 1 family proteins have a conserved glycine-rich P (phosphate-binding)-loop proximal to the entrance of the ligand-binding pocket. However, its conformation differs from that of the canonical P-loop structure found in nucleotide-binding proteins. Several PR-10 members including Bet v1 are allergenic. Cross-reactivity of Bet v 1 with homologs from plant foods results in birch-fruit syndrome. Length = 148

>gnl|CDD|215904 pfam00407, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score =  116 bits (294), Expect = 2e-34
 Identities = 53/152 (34%), Positives = 73/152 (48%), Gaps = 14/152 (9%)

Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGA-GSIKITNFA 60
            V + E EV   V+  + +KAF LE H   PK +P  I+ VE+ +G+ G  GSIK   + 
Sbjct: 1   LVGKLETEVEIKVSADKFYKAFKLEDHLI-PKAIPHHIQGVEVHEGEWGTGGSIKKWTYT 59

Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           + G  K  K RI+  D+ N    Y+V+EGD+L      I          NGGSI K   E
Sbjct: 60  EDGKPKVVKERIEADDEKNKTITYSVLEGDVLEDYKSFITTLQVI-PKSNGGSIVKWTIE 118

Query: 121 FHTK-----------EKAMGLHKIVEAHLLAN 141
           +              +  + L K +EAHLLAN
Sbjct: 119 YEKIGDDVPEPEKYLKFVVKLTKDIEAHLLAN 150

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10: - Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalyzing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 150

>gnl|CDD|198105 smart01037, Bet_v_1, Pathogenesis-related protein Bet v I family

 Score = 58.2 bits (141), Expect = 1e-11
 Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 3/103 (2%)

Query: 20  FKAFFLEAHNFLPKLVPQAIKSVEILQGDGGA-GSIKITNFADGGNFKYAKHRIDELDKD 78
           FK F    H+F PK     I+ V++ +GD G+ GSIKI N+   G  +  K RI+ +D +
Sbjct: 20  FKRFVSRNHHF-PKATGHHIQGVDLHEGDWGSHGSIKIWNYTVDGKEEVFKERIEAVDDE 78

Query: 79  NFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
                + V+EGD++    +S    ++      GGS+ K   E+
Sbjct: 79  KKTITFRVLEGDVM-EEYKSFKGTIQVTPKSGGGSVVKWTLEY 120

This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10.- Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1, an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones. - (S)-Norcoclaurine synthases are enzymes catalysing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens. Length = 151

>gnl|CDD|176863 cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

 Score = 45.8 bits (109), Expect = 6e-07
 Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 13/126 (10%)

Query: 4   MRFEKEVSAAVAPSRMFKAF--FLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
            +    V+      +++     F   H + P     A+ S E+  G  G G+++     D
Sbjct: 1   AKVTVSVTIDAPADKVWALLSDFGGLHKWHP-----AVASCELEGGGPGVGAVRTVTLKD 55

Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
           GG     + R+  LD    R  Y ++EG +    +++ V  ++    G+GG+     +EF
Sbjct: 56  GGTV---RERLLALDDAERRYSYRIVEGPL---PVKNYVATIRVTPEGDGGTRVTWTAEF 109

Query: 122 HTKEKA 127
              E  
Sbjct: 110 DPPEGL 115

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol. Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	146
PF00407	151	Bet_v_1: Pathogenesis-related protein Bet v I fami	100.0
cd07816	148	Bet_v1-like Ligand-binding bet_v_1 domain of major	100.0
cd07821	140	PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1),	99.81
PF10604	139	Polyketide_cyc2: Polyketide cyclase / dehydrase an	99.73
cd08866	144	SRPBCC_11 Ligand-binding SRPBCC domain of an uncha	99.7
cd07813	138	COQ10p_like Coenzyme Q-binding protein COQ10p and	99.63
cd07819	140	SRPBCC_2 Ligand-binding SRPBCC domain of an unchar	99.61
cd08861	142	OtcD1_ARO-CYC_like N-terminal and C-terminal aroma	99.61
cd08865	140	SRPBCC_10 Ligand-binding SRPBCC domain of an uncha	99.57
cd07822	141	SRPBCC_4 Ligand-binding SRPBCC domain of an unchar	99.48
cd08862	138	SRPBCC_Smu440-like Ligand-binding SRPBCC domain of	99.47
PRK10724	158	hypothetical protein; Provisional	99.44
cd07820	137	SRPBCC_3 Ligand-binding SRPBCC domain of an unchar	99.43
cd07812	141	SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR	99.42
cd07817	139	SRPBCC_8 Ligand-binding SRPBCC domain of an unchar	99.39
cd05018	144	CoxG Carbon monoxide dehydrogenase subunit G (CoxG	99.38
cd07825	144	SRPBCC_7 Ligand-binding SRPBCC domain of an unchar	99.38
cd08860	146	TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom	99.37
cd07818	150	SRPBCC_1 Ligand-binding SRPBCC domain of an unchar	99.36
PF03364	130	Polyketide_cyc: Polyketide cyclase / dehydrase and	99.35
cd07814	139	SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-	99.34
cd07824	146	SRPBCC_6 Ligand-binding SRPBCC domain of an unchar	99.3
cd07823	146	SRPBCC_5 Ligand-binding SRPBCC domain of an unchar	99.24
COG3427	146	Carbon monoxide dehydrogenase subunit G, CoxG [Ene	99.08
COG5637	217	Predicted integral membrane protein [Function unkn	99.06
PF06240	140	COXG: Carbon monoxide dehydrogenase subunit G (Cox	98.99
cd08899	157	SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan	98.88
COG2867	146	Oligoketide cyclase/lipid transport protein [Lipid	98.81
cd08898	145	SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan	98.76
cd07826	142	SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligan	98.7
cd08895	146	SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligan	98.67
cd08894	139	SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligan	98.66
cd08876	195	START_1 Uncharacterized subgroup of the steroidoge	98.66
cd08893	136	SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi	98.65
cd08900	143	SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligan	98.61
cd08896	146	SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan	98.61
cd08897	133	SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligan	98.52
cd08891	149	SRPBCC_CalC Ligand-binding SRPBCC domain of Microm	98.34
PF08327	124	AHSA1: Activator of Hsp90 ATPase homolog 1-like pr	98.23
cd08901	136	SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligan	98.22
cd08892	126	SRPBCC_Aha1 Putative hydrophobic ligand-binding SR	98.1
cd08873	235	START_STARD14_15-like Lipid-binding START domain o	97.96
COG3832	149	Uncharacterized conserved protein [Function unknow	97.81
PTZ00220	132	Activator of HSP-90 ATPase; Provisional	97.75
COG4276	153	Uncharacterized conserved protein [Function unknow	97.29
cd08913	240	START_STARD14-like Lipid-binding START domain of m	97.2
cd08874	205	START_STARD9-like C-terminal START domain of mamma	97.14
cd00177	193	START Lipid-binding START domain of mammalian STAR	96.74
cd08863	141	SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-	96.69
cd08914	236	START_STARD15-like Lipid-binding START domain of m	96.67
cd08905	209	START_STARD1-like Cholesterol-binding START domain	96.58
cd08877	215	START_2 Uncharacterized subgroup of the steroidoge	96.57
PF08982	149	DUF1857: Domain of unknown function (DUF1857); Int	96.38
cd08906	209	START_STARD3-like Cholesterol-binding START domain	96.3
cd08871	222	START_STARD10-like Lipid-binding START domain of m	96.17
cd08903	208	START_STARD5-like Lipid-binding START domain of ma	96.13
cd08868	208	START_STARD1_3_like Cholesterol-binding START doma	96.02
cd08870	209	START_STARD2_7-like Lipid-binding START domain of	95.85
cd08911	207	START_STARD7-like Lipid-binding START domain of ma	95.71
PF10698	159	DUF2505: Protein of unknown function (DUF2505); In	95.49
KOG3177	227	consensus Oligoketide cyclase/lipid transport prot	94.21
smart00234	206	START in StAR and phosphatidylcholine transfer pro	94.08
cd08872	235	START_STARD11-like Ceramide-binding START domain o	93.98
cd08869	197	START_RhoGAP C-terminal lipid-binding START domain	92.93
cd08867	206	START_STARD4_5_6-like Lipid-binding START domain o	92.66
cd08910	207	START_STARD2-like Lipid-binding START domain of ma	92.58
cd08908	204	START_STARD12-like C-terminal lipid-binding START	89.25
PF01852	206	START: START domain; InterPro: IPR002913 START (St	84.78

>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms

Probab=100.00  E-value=6.9e-41  Score=243.82  Aligned_cols=139  Identities=43%  Similarity=0.736  Sum_probs=131.3

Q ss_pred             CccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCC-cEEEEEeecCCcceeeEEEEEEeeCCC
Q 032152            1 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAG-SIKITNFADGGNFKYAKHRIDELDKDN   79 (146)
Q Consensus         1 m~~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~G-sir~~~~~~g~~~~~~kErl~~~D~~~   79 (146)
                      |++++++.|+++++||+++|++++ +.++++|+++|++|+|++++||||++| |||.|+|.+|++..++|||++.+|+++
T Consensus         1 m~~~~~~~E~~~~~~a~k~~ka~~-~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~   79 (151)
T PF00407_consen    1 MGVGKLEVEVEVKVSADKLWKAFK-SSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEEN   79 (151)
T ss_dssp             SCEEEEEEEEEESS-HHHHHHHHT-THHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTT
T ss_pred             CCcEEEEEEEEecCCHHHHHHHHh-cCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCC
Confidence            999999999999999999999999 788999999999999999999998777 999999999999899999999999999


Q ss_pred             CeeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe-----------chhhhhHHHHHHHHHhhC
Q 032152           80 FRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT-----------KEKAMGLHKIVEAHLLAN  141 (146)
Q Consensus        80 ~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-----------~~~~~~~~k~~e~~l~~~  141 (146)
                      ++++|+++||+++. .|++|..++++.|.++|+|+++|+++|++           .+++..++|++|+||++|
T Consensus        80 ~~~~y~viEGd~l~-~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~~~~~~~~~~K~ieayLlan  151 (151)
T PF00407_consen   80 KTITYTVIEGDVLG-DYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEKYLDFAVGMFKAIEAYLLAN  151 (151)
T ss_dssp             TEEEEEEEEETTGT-TTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cEEEEEEEeccccc-cEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999986 59999999999999999999999999999           678899999999999997

A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....

>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins

Probab=100.00  E-value=3.4e-35  Score=212.94  Aligned_cols=136  Identities=41%  Similarity=0.632  Sum_probs=122.7

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhcccc-ccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCee
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHN-FLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~-~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (146)
                      .+++.+++|+|||++||++++ |+.+ +.+.|+| .|++|++++|+|++||||.|+|.+|++..+++|||+.+|+++|++
T Consensus         1 ~~~~~e~~i~a~ad~vW~~~~-~~~~~~~~~~~p-~v~~~~~~eG~~~~GsvR~~~~~~~~~~~~~kE~l~~~D~~~~~~   78 (148)
T cd07816           1 GTLEHEVELKVPAEKLWKAFV-LDSHLLPPKLPP-VIKSVELLEGDGGPGSIKLITFGPGGKVKYVKERIDAVDEENKTY   78 (148)
T ss_pred             CcEEEEEEecCCHHHHHHHHh-cChhhccccccc-cccEEEEEecCCCCceEEEEEEcCCCcceEEEEEEEEEcccccEE
Confidence            368999999999999999999 9984 3455666 799999999999999999999998877789999999999999999


Q ss_pred             EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe-----------chhhhhHHHHHHHHHhhC
Q 032152           83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT-----------KEKAMGLHKIVEAHLLAN  141 (146)
Q Consensus        83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-----------~~~~~~~~k~~e~~l~~~  141 (146)
                      +|++++|+++..+|++|+++++|.|.++++|+++|+++|++           ++.+..++++++.|++.+
T Consensus        79 ~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  148 (148)
T cd07816          79 KYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEEEIKAGKEKALKMFKAVEAYL  148 (148)
T ss_pred             EEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHHhHHHHHHHHHHHHHhcC
Confidence            99999999875469999999999999888999999999998           678889999999998753

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth

>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins

Probab=99.81  E-value=2.6e-18  Score=120.29  Aligned_cols=110  Identities=23%  Similarity=0.472  Sum_probs=96.3

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY   84 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y   84 (146)
                      .++.+++|++|+++||+++. |+.+ +++|+|. ++++++++++.++|+++.+.+..|.   .+++++..+|+.++++.|
T Consensus         2 ~i~~~~~i~a~~~~V~~~l~-d~~~-~~~w~~~-~~~~~~~~~~~~~g~~~~~~~~~g~---~~~~~i~~~~~~~~~i~~   75 (140)
T cd07821           2 KVTVSVTIDAPADKVWALLS-DFGG-LHKWHPA-VASCELEGGGPGVGAVRTVTLKDGG---TVRERLLALDDAERRYSY   75 (140)
T ss_pred             cEEEEEEECCCHHHHHHHHh-CcCc-hhhhccC-cceEEeecCCCCCCeEEEEEeCCCC---EEEEEehhcCccCCEEEE
Confidence            57889999999999999999 9999 8999996 8888887665468999999887663   788999999998789999


Q ss_pred             EEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           85 TVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        85 ~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      ++.+|+.   ++.++.++++++|.++|+|.++|+..|++
T Consensus        76 ~~~~~~~---~~~~~~~~~~~~~~~~~~t~v~~~~~~~~  111 (140)
T cd07821          76 RIVEGPL---PVKNYVATIRVTPEGDGGTRVTWTAEFDP  111 (140)
T ss_pred             EecCCCC---CcccceEEEEEEECCCCccEEEEEEEEec
Confidence            9988742   37789999999999887899999999999

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate

>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis

Probab=99.73  E-value=1.6e-15  Score=106.04  Aligned_cols=108  Identities=22%  Similarity=0.410  Sum_probs=87.7

Q ss_pred             cEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCee
Q 032152            3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         3 ~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (146)
                      +.+++.++.|+|||++||+++. |+.+ +++|+|. +.++++.+++ ++|..+.++....   ..+.+++..+|++++.+
T Consensus         1 M~~~~~~~~v~a~~e~V~~~l~-d~~~-~~~w~~~-~~~~~~~~~~-~~~~~~~~~~~g~---~~~~~~i~~~~~~~~~~   73 (139)
T PF10604_consen    1 MFKVEVSIEVPAPPEAVWDLLS-DPEN-WPRWWPG-VKSVELLSGG-GPGTERTVRVAGR---GTVREEITEYDPEPRRI   73 (139)
T ss_dssp             -EEEEEEEEESS-HHHHHHHHT-TTTG-GGGTSTT-EEEEEEEEEC-STEEEEEEEECSC---SEEEEEEEEEETTTTEE
T ss_pred             CEEEEEEEEECCCHHHHHHHHh-Chhh-hhhhhhc-eEEEEEcccc-ccceeEEEEeccc---cceeEEEEEecCCCcEE
Confidence            4688999999999999999999 9999 8999996 8889977633 3455555553331   37999999999889999


Q ss_pred             EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      .|++. .    .++.++.+++++.|.++| |.++|+.+|++
T Consensus        74 ~~~~~-~----~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~  108 (139)
T PF10604_consen   74 TWRFV-P----SGFTNGTGRWRFEPVGDG-TRVTWTVEFEP  108 (139)
T ss_dssp             EEEEE-S----SSSCEEEEEEEEEEETTT-EEEEEEEEEEE
T ss_pred             EEEEE-e----cceeEEEEEEEEEEcCCC-EEEEEEEEEEE
Confidence            99996 1    247788999999999865 99999999995

It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....

>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.70  E-value=1.3e-15  Score=108.13  Aligned_cols=109  Identities=15%  Similarity=0.261  Sum_probs=81.9

Q ss_pred             EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCC----cceeeEEEEEEeeCCCCe
Q 032152            6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGG----NFKYAKHRIDELDKDNFR   81 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~----~~~~~kErl~~~D~~~~~   81 (146)
                      ++.++.|++||++||+++. |+++ +|+|+|+ +++++++++.+ .+....+....+.    -...+..++...++.++.
T Consensus         1 ~~~~~~i~a~~~~Vw~~l~-D~~~-~~~w~p~-v~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   76 (144)
T cd08866           1 VVARVRVPAPPETVWAVLT-DYDN-LAEFIPN-LAESRLLERNG-NRVVLEQTGKQGILFFKFEARVVLELREREEFPRE   76 (144)
T ss_pred             CeEEEEECCCHHHHHHHHh-Chhh-HHhhCcC-ceEEEEEEcCC-CEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCce
Confidence            4678999999999999999 9999 9999997 88999887643 1211111100000    012445556666666889


Q ss_pred             eEEEEEecCCCCcceeEEEEEEEEEEcCC-CceEEEEEEEEEe
Q 032152           82 CKYTVIEGDMLGTILESIVYDVKFEASGN-GGSICKVASEFHT  123 (146)
Q Consensus        82 ~~y~i~eg~~~~~~~~~y~~t~~v~p~~~-g~s~v~w~~~y~~  123 (146)
                      +.|++++|+     +++|.+++++.|.++ |+|.++|...+++
T Consensus        77 i~~~~~~g~-----~~~~~g~w~~~~~~~~~~t~v~~~~~~~~  114 (144)
T cd08866          77 LDFEMVEGD-----FKRFEGSWRLEPLADGGGTLLTYEVEVKP  114 (144)
T ss_pred             EEEEEcCCc-----hhceEEEEEEEECCCCCeEEEEEEEEEEe
Confidence            999998875     678999999999988 6899999999999

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins

Probab=99.63  E-value=1.6e-14  Score=102.23  Aligned_cols=107  Identities=15%  Similarity=0.238  Sum_probs=85.0

Q ss_pred             EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEEE
Q 032152            6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYT   85 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~   85 (146)
                      ++.++.|++|+++||+++. |+++ +|+|+|+ +++++++++++ .+....+....++....+..++. +++ .+++++.
T Consensus         1 ~~~s~~i~ap~~~v~~~i~-D~~~-~~~~~p~-~~~~~vl~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i~~~   74 (138)
T cd07813           1 YSKSRLVPYSAEQMFDLVA-DVER-YPEFLPW-CTASRVLERDE-DELEAELTVGFGGIRESFTSRVT-LVP-PESIEAE   74 (138)
T ss_pred             CeEEEEcCCCHHHHHHHHH-HHHh-hhhhcCC-ccccEEEEcCC-CEEEEEEEEeeccccEEEEEEEE-ecC-CCEEEEE
Confidence            3678999999999999999 9999 9999997 88999987654 33444455554432234555554 666 6688999


Q ss_pred             EEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           86 VIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        86 i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      .++|+     ++.+.+++++.|.++|+|.|+|..+|++
T Consensus        75 ~~~g~-----~~~~~g~w~~~p~~~~~T~v~~~~~~~~  107 (138)
T cd07813          75 LVDGP-----FKHLEGEWRFKPLGENACKVEFDLEFEF  107 (138)
T ss_pred             ecCCC-----hhhceeEEEEEECCCCCEEEEEEEEEEE
Confidence            88883     6789999999999888999999999999

Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the

>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.61  E-value=1e-13  Score=97.27  Aligned_cols=110  Identities=17%  Similarity=0.253  Sum_probs=81.8

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC-CCCCcEEEEEeecCCcceeeEEEEEEeeCCCCee
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD-GGAGSIKITNFADGGNFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd-g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (146)
                      .+++.++.|+|||++||+++. |+.+ +|+|+|. +.++++++++ ++.+....+++..++-.....-+++ .++ .+++
T Consensus         2 ~~v~~s~~i~ap~e~V~~~l~-D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~i   76 (140)
T cd07819           2 IKVSREFEIEAPPAAVMDVLA-DVEA-YPEWSPK-VKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYT-WDG-AGSV   76 (140)
T ss_pred             ceEEEEEEEeCCHHHHHHHHh-Chhh-hhhhCcc-eEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEE-EcC-CCcE
Confidence            578999999999999999999 9999 9999996 8899986553 3333344455543321111111222 233 6789


Q ss_pred             EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      +|+..+|.    +..++.++++++|.++ +|.|+|+.++++
T Consensus        77 ~~~~~~~~----~~~~~~~~~~~~~~~~-~t~vt~~~~~~~  112 (140)
T cd07819          77 SWTLVEGE----GNRSQEGSYTLTPKGD-GTRVTFDLTVEL  112 (140)
T ss_pred             EEEEeccc----ceeEEEEEEEEEECCC-CEEEEEEEEEEe
Confidence            99998875    3678899999999876 799999999998

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains

Probab=99.61  E-value=5e-14  Score=99.74  Aligned_cols=110  Identities=23%  Similarity=0.337  Sum_probs=82.4

Q ss_pred             EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEEE
Q 032152            6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYT   85 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~   85 (146)
                      ++++++|++|+++||+++. |+.+ +|+|+|.  .+++.++++++...++.+....++..... +....+|++.+++.|.
T Consensus         1 ~~~s~~i~ap~~~V~~~l~-D~~~-~p~~~p~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~i~~~   75 (142)
T cd08861           1 VEHSVTVAAPAEDVYDLLA-DAER-WPEFLPT--VHVERLELDGGVERLRMWATAFDGSVHTW-TSRRVLDPEGRRIVFR   75 (142)
T ss_pred             CeEEEEEcCCHHHHHHHHH-hHHh-hhccCCC--ceEEEEEEcCCEEEEEEEEEcCCCcEEEE-EEEEEEcCCCCEEEEE
Confidence            4689999999999999999 9999 9999996  45554544322224555555533322222 3445678888899999


Q ss_pred             EEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           86 VIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        86 i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      .+++..   .+..+.+++.|+|.++++|.|+|+.+|++
T Consensus        76 ~~~~~~---~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~  110 (142)
T cd08861          76 QEEPPP---PVASMSGEWRFEPLGGGGTRVTLRHDFTL  110 (142)
T ss_pred             EeeCCC---ChhhheeEEEEEECCCCcEEEEEEEEEEE
Confidence            887533   27889999999999878899999999999

This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this

>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.57  E-value=4.1e-13  Score=93.59  Aligned_cols=107  Identities=18%  Similarity=0.201  Sum_probs=84.8

Q ss_pred             EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC-CCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152            6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD-GGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY   84 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd-g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y   84 (146)
                      ++.++.|+||+++||+++. |+.+ +++|.|. +.+++.+.+. .++|+...+....++....++++++.+|+ ++.+.|
T Consensus         1 ~~~~~~i~ap~~~Vw~~l~-d~~~-~~~w~~~-~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p-~~~~~~   76 (140)
T cd08865           1 VEESIVIERPVEEVFAYLA-DFEN-APEWDPG-VVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEP-GRRVVF   76 (140)
T ss_pred             CceEEEEcCCHHHHHHHHH-Cccc-hhhhccC-ceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecC-CcEEEE
Confidence            3578899999999999999 9999 8999997 6778876443 46788888876644333467889988875 578888


Q ss_pred             EEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           85 TVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        85 ~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      ...+++     + .+..++.+.|.++ +|.++|+.+|+.
T Consensus        77 ~~~~~~-----~-~~~~~~~~~~~~~-~t~v~~~~~~~~  108 (140)
T cd08865          77 RGSSGP-----F-PYEDTYTFEPVGG-GTRVRYTAELEP  108 (140)
T ss_pred             EecCCC-----c-ceEEEEEEEEcCC-ceEEEEEEEEcc
Confidence            876552     2 3688999999865 699999999988

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.48  E-value=1.1e-11  Score=86.56  Aligned_cols=109  Identities=17%  Similarity=0.143  Sum_probs=83.3

Q ss_pred             EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecC-CcceeeEEEEEEeeCCCCeeEE
Q 032152            6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADG-GNFKYAKHRIDELDKDNFRCKY   84 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g-~~~~~~kErl~~~D~~~~~~~y   84 (146)
                      ++.++.|+||+++||+++. |+.+ +|+|+|. +.+++...  .++|+...+.+..+ +....+.+++.++|+. +++.|
T Consensus         2 v~~~~~i~ap~~~Vw~~~~-d~~~-~~~w~~~-~~~~~~~~--~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~-~~~~~   75 (141)
T cd07822           2 ISTEIEINAPPEKVWEVLT-DFPS-YPEWNPF-VRSATGLS--LALGARLRFVVKLPGGPPRSFKPRVTEVEPP-RRLAW   75 (141)
T ss_pred             eEEEEEecCCHHHHHHHHh-cccc-ccccChh-heeEeccc--cCCCCEEEEEEeCCCCCcEEEEEEEEEEcCC-CEeEE
Confidence            6789999999999999999 9999 8999985 55655321  45677777776543 2334677888888875 58889


Q ss_pred             EEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           85 TVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        85 ~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      +...++..   ......++.|+|.++++|.++|+..|..
T Consensus        76 ~~~~~~~~---~~~~~~~~~~~~~~~~~T~~~~~~~~~g  111 (141)
T cd07822          76 RGGLPFPG---LLDGEHSFELEPLGDGGTRFVHRETFSG  111 (141)
T ss_pred             EecCCCCc---EeeEEEEEEEEEcCCCcEEEEEeeEEEE
Confidence            98666532   2356689999998677899999988875

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu

Probab=99.47  E-value=1e-11  Score=86.97  Aligned_cols=106  Identities=19%  Similarity=0.245  Sum_probs=81.7

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY   84 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y   84 (146)
                      +++.++.|+||+++||+++. |+.+ +|+|+|+ +++++...+..++|+...++...+.   .+..++.++++.+ +++|
T Consensus         2 ~~~~~~~i~Ap~~~Vw~~~~-d~~~-~~~w~~~-~~~~~~~~~~~~~G~~~~~~~~~~~---~~~~~i~~~~p~~-~~~~   74 (138)
T cd08862           2 KFEATIVIDAPPERVWAVLT-DVEN-WPAWTPS-VETVRLEGPPPAVGSSFKMKPPGLV---RSTFTVTELRPGH-SFTW   74 (138)
T ss_pred             EEEEEEEEcCCHHHHHHHHH-hhhh-cccccCc-ceEEEEecCCCCCCcEEEEecCCCC---ceEEEEEEecCCC-EEEE
Confidence            67899999999999999999 9999 8999996 8888876443267776666544332   5677888888654 6877


Q ss_pred             EEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           85 TVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        85 ~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      +... +     ...+..++.|+|.++++|.++|+.+|..
T Consensus        75 ~~~~-~-----~~~~~~~~~~~~~~~~~t~l~~~~~~~~  107 (138)
T cd08862          75 TGPA-P-----GISAVHRHEFEAKPDGGVRVTTSESLSG  107 (138)
T ss_pred             EecC-C-----CEEEEEEEEEEEcCCCcEEEEEEEEeec
Confidence            7532 2     2345689999998767899999999986

440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.

>PRK10724 hypothetical protein; Provisional

Probab=99.44  E-value=7.6e-12  Score=91.71  Aligned_cols=109  Identities=12%  Similarity=0.252  Sum_probs=85.1

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeE
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCK   83 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (146)
                      ..+..++.|++||+++|+++. |.++ +|+|+|. .+++++++.++. +.+..++.+-++-......|.. +++++ ++.
T Consensus        15 ~~i~~~~~v~~s~~~v~~lv~-Dve~-yp~flp~-~~~s~vl~~~~~-~~~a~l~v~~~g~~~~f~srv~-~~~~~-~I~   88 (158)
T PRK10724         15 PQISRTALVPYSAEQMYQLVN-DVQS-YPQFLPG-CTGSRVLESTPG-QMTAAVDVSKAGISKTFTTRNQ-LTSNQ-SIL   88 (158)
T ss_pred             CeEEEEEEecCCHHHHHHHHH-HHHH-HHHhCcc-cCeEEEEEecCC-EEEEEEEEeeCCccEEEEEEEE-ecCCC-EEE
Confidence            467888999999999999999 9999 9999996 777788765432 2344455554443345556644 55554 899


Q ss_pred             EEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           84 YTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        84 y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      +.+++|+     ++++.+.|+|.|.++++|.|++..+|+.
T Consensus        89 ~~~~~Gp-----F~~l~g~W~f~p~~~~~t~V~~~l~fef  123 (158)
T PRK10724         89 MQLVDGP-----FKKLIGGWKFTPLSQEACRIEFHLDFEF  123 (158)
T ss_pred             EEecCCC-----hhhccceEEEEECCCCCEEEEEEEEEEE
Confidence            9999884     7889999999998877899999999999

>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.43  E-value=1.3e-11  Score=87.56  Aligned_cols=108  Identities=19%  Similarity=0.203  Sum_probs=85.2

Q ss_pred             EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC---CCCCcEEEEEeecCCcceeeEEEEEEeeCCCCee
Q 032152            6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD---GGAGSIKITNFADGGNFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd---g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (146)
                      ++.++.|+||+++||+.+. |..+ +|+|+|+ +.++++++.+   ..+|+.-.+.+..++-.-.++-+++.+++ ++.+
T Consensus         1 ~~~s~~I~ap~e~V~~~~~-d~~~-~~~~~p~-~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w~~~it~~~p-~~~f   76 (137)
T cd07820           1 LERSTVIPAPIEEVFDFHS-RPDN-LERLTPP-WLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRWTTEITEVEP-PRRF   76 (137)
T ss_pred             CeEEEEcCCCHHHHHHHHc-Ccch-HHhcCCC-CCCeEEEecCCCcccCCcEEEEEEEecCCceEEEEEEEEEcC-CCeE
Confidence            4678999999999999999 9999 9999997 7788887432   25578888887765422345666676654 5568


Q ss_pred             EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      ++..+.|+     +..+..++.+.|.++ ||.++++++|+.
T Consensus        77 ~~~~~~G~-----~~~w~h~~~f~~~~~-gT~vt~~v~~~~  111 (137)
T cd07820          77 VDEQVSGP-----FRSWRHTHRFEAIGG-GTLMTDRVEYRL  111 (137)
T ss_pred             EEEeccCC-----chhCEEEEEEEECCC-ceEEEEEEEEeC
Confidence            88887764     567888999999876 699999999999

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily

Probab=99.42  E-value=1.8e-11  Score=83.29  Aligned_cols=108  Identities=19%  Similarity=0.349  Sum_probs=84.9

Q ss_pred             EEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC-CCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEEE
Q 032152            7 EKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD-GGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYT   85 (146)
Q Consensus         7 ~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd-g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~   85 (146)
                      +.++.|++|+++||+++. |+.+ +++|.|+ +.++++.++. ...|....+.+..+ .......++..+++ +..++|+
T Consensus         2 ~~~~~i~a~~~~v~~~l~-d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~-~~~~~~~   76 (141)
T cd07812           2 EASIEIPAPPEAVWDLLS-DPER-WPEWSPG-LERVEVLGGGEGGVGARFVGGRKGG-RRLTLTSEVTEVDP-PRPGRFR   76 (141)
T ss_pred             cEEEEeCCCHHHHHHHHh-Chhh-hhhhCcc-cceEEEcCCCCccceeEEEEEecCC-ccccceEEEEEecC-CCceEEE
Confidence            568899999999999998 9999 8999997 7888876543 45666666655412 22356778887777 6688899


Q ss_pred             EEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           86 VIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        86 i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      ...++..    ..+..++.+.+.++++|.++|+.++.+
T Consensus        77 ~~~~~~~----~~~~~~~~~~~~~~~~t~v~~~~~~~~  110 (141)
T cd07812          77 VTGGGGG----VDGTGEWRLEPEGDGGTRVTYTVEYDP  110 (141)
T ss_pred             EecCCCC----cceeEEEEEEECCCCcEEEEEEEEEec
Confidence            8876643    478899999998765899999999998

SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.39  E-value=1.7e-11  Score=85.86  Aligned_cols=105  Identities=21%  Similarity=0.263  Sum_probs=77.6

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY   84 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y   84 (146)
                      +++.++.|+||+++||+++. |+.+ +|+|.|+ +++++++.+.   +.-..+.+.. |....+..++..+++ ++.+.|
T Consensus         1 ~v~~~i~I~ap~e~V~~~~~-D~~~-~~~w~~~-~~~~~~~~~~---~~~~~~~~~~-g~~~~~~~~v~~~~~-~~~i~~   72 (139)
T cd07817           1 TVEKSITVNVPVEEVYDFWR-DFEN-LPRFMSH-VESVEQLDDT---RSHWKAKGPA-GLSVEWDAEITEQVP-NERIAW   72 (139)
T ss_pred             CeeEEEEeCCCHHHHHHHHh-Chhh-hHHHhhh-hcEEEEcCCC---ceEEEEecCC-CCcEEEEEEEeccCC-CCEEEE
Confidence            36789999999999999999 9999 9999996 8888876441   2222222222 333455666665555 446999


Q ss_pred             EEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           85 TVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        85 ~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      ....|.     + .+.+++.|.|.++++|.+++++.|++
T Consensus        73 ~~~~~~-----~-~~~~~~~f~~~~~~~T~vt~~~~~~~  105 (139)
T cd07817          73 RSVEGA-----D-PNAGSVRFRPAPGRGTRVTLTIEYEP  105 (139)
T ss_pred             EECCCC-----C-CcceEEEEEECCCCCeEEEEEEEEEC
Confidence            876653     3 46789999998777899999999998

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG)

Probab=99.38  E-value=2.9e-11  Score=85.10  Aligned_cols=111  Identities=14%  Similarity=0.116  Sum_probs=75.1

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY   84 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y   84 (146)
                      +++.++.|++|+++||+++. |+.+ +++|+|+ +++++.++++. ......+.+...+..-...-++..+|+. +++.+
T Consensus         2 ~~~~~~~i~a~~e~v~~~l~-D~~~-~~~w~p~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   76 (144)
T cd05018           2 KISGEFRIPAPPEEVWAALN-DPEV-LARCIPG-CESLEKIGPNE-YEATVKLKVGPVKGTFKGKVELSDLDPP-ESYTI   76 (144)
T ss_pred             eeeeEEEecCCHHHHHHHhc-CHHH-HHhhccc-hhhccccCCCe-EEEEEEEEEccEEEEEEEEEEEEecCCC-cEEEE
Confidence            57889999999999999999 9999 9999997 77777664321 1111112221111111223455555544 56777


Q ss_pred             EEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           85 TVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        85 ~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      +....+..  ....+..++.+.|. +++|.++|+.+|++
T Consensus        77 ~~~~~~~~--~~~~~~~~~~l~~~-~~gT~v~~~~~~~~  112 (144)
T cd05018          77 TGEGKGGA--GFVKGTARVTLEPD-GGGTRLTYTADAQV  112 (144)
T ss_pred             EEEEcCCC--ceEEEEEEEEEEec-CCcEEEEEEEEEEE
Confidence            76543322  25689999999998 66899999999997

CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.38  E-value=4.2e-11  Score=84.84  Aligned_cols=111  Identities=8%  Similarity=0.105  Sum_probs=78.9

Q ss_pred             EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC--CCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeE
Q 032152            6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD--GGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCK   83 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd--g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (146)
                      ++.++.|+|||++||+++. |+.+ +|.|.|.... .....++  -.+|+...+.....+....+..++..+++.+ ++.
T Consensus         2 i~~~~~i~ap~e~Vw~~l~-d~~~-~~~W~~~~~~-~~~~~~~~~~~~G~~~~~~~~~~g~~~~~~~~v~~~~p~~-~l~   77 (144)
T cd07825           2 VSVSRTVDAPAEAVFAVLA-DPRR-HPEIDGSGTV-REAIDGPRILAVGDVFRMAMRLDGGPYRITNHVVAFEENR-LIA   77 (144)
T ss_pred             eEEEEEEeCCHHHHHHHHh-Cccc-cceeCCCCcc-ccccCCCccCCCCCEEEEEEEcCCCceEEEEEEEEECCCC-EEE
Confidence            5788999999999999999 9999 9999985222 2222333  4778888777664222235666778777755 688


Q ss_pred             EEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           84 YTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        84 y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      |+..-.+.   +......++.++|.++|+|.++++.+|..
T Consensus        78 ~~~~~~~~---~~~~~~~~~~l~~~~~g~T~vt~~~~~~g  114 (144)
T cd07825          78 WRPGPAGQ---EPGGHRWRWELEPIGPGRTRVTETYDWSA  114 (144)
T ss_pred             EEccCCCC---CCCceeEEEEEEECCCCcEEEEEEEeccC
Confidence            88531111   13345678999998878899999998876

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains

Probab=99.37  E-value=2.3e-11  Score=87.93  Aligned_cols=108  Identities=14%  Similarity=0.199  Sum_probs=79.0

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC-CCCCcEEEEEeecCCcc-eeeEEEEEEeeCCCCee
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD-GGAGSIKITNFADGGNF-KYAKHRIDELDKDNFRC   82 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd-g~~Gsir~~~~~~g~~~-~~~kErl~~~D~~~~~~   82 (146)
                      ..+.+++|++||++||+++. |..+ +|.|.|. ++++++++++ .+.|+--.+....++.. .+..|+  .+|+..+++
T Consensus         2 ~~~~si~i~a~~~~v~~lva-Dv~~-~P~~~~~-~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~--~~~~~~~~i   76 (146)
T cd08860           2 RTDNSIVIDAPLDLVWDMTN-DIAT-WPDLFSE-YAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSER--TLDPVNRTV   76 (146)
T ss_pred             cceeEEEEcCCHHHHHHHHH-hhhh-hhhhccc-eEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEE--EecCCCcEE
Confidence            46789999999999999999 9999 9999996 8888987654 34443221122223322 333343  378888888


Q ss_pred             EEE-EEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           83 KYT-VIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        83 ~y~-i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      .+. ...|     |+....++++|+|.++| |.|++..+|+.
T Consensus        77 ~~~~~~~~-----p~~~m~~~W~f~~~~~g-T~V~~~~~~~~  112 (146)
T cd08860          77 RARRVETG-----PFAYMNIRWEYTEVPEG-TRMRWVQDFEM  112 (146)
T ss_pred             EEEEecCC-----CcceeeeeEEEEECCCC-EEEEEEEEEEE
Confidence            774 2222     38899999999999665 99999999997

This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.

>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.36  E-value=8.9e-11  Score=83.78  Aligned_cols=110  Identities=18%  Similarity=0.150  Sum_probs=80.3

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceee---EEE--EcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCC
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKS---VEI--LQGDGGAGSIKITNFADGGNFKYAKHRIDELDKD   78 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s---~~~--~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~   78 (146)
                      .+++.++.|++|+++||+++. |+.+ +|+|.|. ...   ++.  .+++.++|+...++...+.  .....++..+++ 
T Consensus         2 ~~~~~s~~I~ap~e~V~~~i~-D~~~-~~~W~p~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~--~~~~~~v~~~~p-   75 (150)
T cd07818           2 YRVERSIVINAPPEEVFPYVN-DLKN-WPEWSPW-EKLDPDMKRTYSGPDSGVGASYSWEGNDKV--GEGEMEITESVP-   75 (150)
T ss_pred             eEEEEEEEEeCCHHHHHHHHh-Cccc-CcccCch-hhcCcceEEEecCCCCCCCeEEEEecCCcc--cceEEEEEecCC-
Confidence            368899999999999999999 9999 9999995 332   221  1233467888777655421  133456676765 


Q ss_pred             CCeeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           79 NFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        79 ~~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      ++++.|+...++++.   .++..++.++|. +|||.++|+.+|+.
T Consensus        76 ~~~i~~~~~~~~~~~---~~~~~~~~~~~~-~~gT~v~~~~~~~~  116 (150)
T cd07818          76 NERIEYELRFIKPFE---ATNDVEFTLEPV-GGGTKVTWGMSGEL  116 (150)
T ss_pred             CcEEEEEEEecCCcc---ccceEEEEEEEc-CCceEEEEEEEecC
Confidence            567999987644321   267899999999 45799999999986

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp

Probab=99.35  E-value=6.6e-11  Score=82.53  Aligned_cols=101  Identities=24%  Similarity=0.439  Sum_probs=71.4

Q ss_pred             ecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEEEEEecCC
Q 032152           12 AAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGDM   91 (146)
Q Consensus        12 i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~eg~~   91 (146)
                      |+|||++||+++. |+.+ +|+|+|. ++++++++.++. +..-.+....++....+..++.. ++... +.+..++|+ 
T Consensus         1 V~ap~~~V~~~i~-D~e~-~~~~~p~-~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~g~-   73 (130)
T PF03364_consen    1 VNAPPEEVWSVIT-DYEN-YPRFFPP-VKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVTE-DPPER-IRFEQISGP-   73 (130)
T ss_dssp             ESS-HHHHHHHHT-TGGG-HHHHCTT-EEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEEE-ECTTT-EEEESSETT-
T ss_pred             CCCCHHHHHHHHH-HHHH-HHHhCCC-CceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEEE-EEeee-eeeeecCCC-
Confidence            6899999999999 9999 9999996 889999876543 33334555554433455666553 44444 777777774 


Q ss_pred             CCcceeEEEEEEEEEEcCC--CceEEEEEEEEEe
Q 032152           92 LGTILESIVYDVKFEASGN--GGSICKVASEFHT  123 (146)
Q Consensus        92 ~~~~~~~y~~t~~v~p~~~--g~s~v~w~~~y~~  123 (146)
                          ++++.+++++.|.++  |+|.++++.+|+.
T Consensus        74 ----~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~  103 (130)
T PF03364_consen   74 ----FKSFEGSWRFEPLGGNEGGTRTRVTYDYEV  103 (130)
T ss_dssp             ----EEEEEEEEEEEEETTECCEEEEEEEEEEEE
T ss_pred             ----chhcEEEEEEEECCCCcCCCEEEEEEEEEE
Confidence                899999999999875  2455555555443

are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....

>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins

Probab=99.34  E-value=9.9e-11  Score=81.87  Aligned_cols=109  Identities=16%  Similarity=0.143  Sum_probs=79.4

Q ss_pred             EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEEE
Q 032152            6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYT   85 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~   85 (146)
                      ++.+++|+||+++||+++. |+.+ +|+|+|+ +..++.....|  |+.+......++....+..++..+|+. +++.|+
T Consensus         2 i~~s~~I~a~~~~Vw~~l~-d~~~-~~~w~~~-~~~~~~~~~~G--g~~~~~~~~~~g~~~~~~~~i~~~~~~-~~i~~~   75 (139)
T cd07814           2 ITIEREFDAPPELVWRALT-DPEL-LAQWFGP-TTTAEMDLRVG--GRWFFFMTGPDGEEGWVSGEVLEVEPP-RRLVFT   75 (139)
T ss_pred             eEEEEEecCCHHHHHHHcC-CHHH-HHhhhCc-CCceEEcccCC--ceEEEEEECCCCCEEeccEEEEEEcCC-CeEEEE
Confidence            5788999999999999999 9999 9999995 22222211222  666655444333234678888888866 578999


Q ss_pred             EEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           86 VIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        86 i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      ...++..  +.-....++.|.|.+ ++|.++|+.++.+
T Consensus        76 ~~~~~~~--~~~~~~~~~~~~~~~-~~T~v~~~~~~~~  110 (139)
T cd07814          76 WAFSDET--PGPETTVTVTLEETG-GGTRLTLTHSGFP  110 (139)
T ss_pred             ecccCCC--CCCceEEEEEEEECC-CCEEEEEEEEccC
Confidence            8776531  134678899999997 5799999999987

This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer

>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.30  E-value=3.8e-10  Score=80.78  Aligned_cols=106  Identities=17%  Similarity=0.255  Sum_probs=76.2

Q ss_pred             EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEc--CCCCCCcEEEEEeecC-CcceeeEEEEEEeeCCCCee
Q 032152            6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQ--GDGGAGSIKITNFADG-GNFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~e--Gdg~~Gsir~~~~~~g-~~~~~~kErl~~~D~~~~~~   82 (146)
                      ++.+..|++||++||+++. |+.+ +|+|+|+ +++++.++  ++.++|+.-....... +....+.-++... +..+.+
T Consensus         3 ~~~~~~i~ap~e~Vw~~~t-D~~~-~~~w~~~-v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~-~p~~~~   78 (146)
T cd07824           3 FHTVWRIPAPPEAVWDVLV-DAES-WPDWWPG-VERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRI-EPLSLL   78 (146)
T ss_pred             ceEEEEecCCHHHHHHHHh-Chhh-cchhhhc-eEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEee-cCCcEE
Confidence            5677899999999999999 9999 9999996 88888876  3346676654443322 2112344455554 455688


Q ss_pred             EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      .|.. +|++     + ...+++|.|.++ ||.|+++.+++.
T Consensus        79 ~~~~-~g~~-----~-~~~~~~~~~~~~-gt~vt~~~~~~~  111 (146)
T cd07824          79 EVRA-SGDL-----E-GVGRWTLAPDGS-GTVVRYDWEVRT  111 (146)
T ss_pred             EEEE-EEee-----e-EEEEEEEEEcCC-CEEEEEEEEEEc
Confidence            8875 5642     2 268899999754 699999999996

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins

Probab=99.24  E-value=4.3e-10  Score=80.49  Aligned_cols=110  Identities=16%  Similarity=0.225  Sum_probs=70.5

Q ss_pred             EEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceee--EEEEEEeeCCCCeeEE
Q 032152            7 EKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYA--KHRIDELDKDNFRCKY   84 (146)
Q Consensus         7 ~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~--kErl~~~D~~~~~~~y   84 (146)
                      +.+++|++||++||+++. |+.+ ++.|+|+ +++++.. |++.  ..-.+++..|+-...+  +=++..++++.+++.+
T Consensus         2 ~~~~~v~a~pe~vw~~l~-D~~~-~~~~~pg-~~~~~~~-~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   75 (146)
T cd07823           2 ENEFTVPAPPDRVWALLL-DIER-VAPCLPG-ASLTEVE-GDDE--YKGTVKVKLGPISASFKGTARLLEDDEAARRAVL   75 (146)
T ss_pred             CceEEecCCHHHHHHHhc-CHHH-HHhcCCC-ceecccc-CCCe--EEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEE
Confidence            568899999999999999 9999 8999997 8887754 3221  1122333322211122  1245555557778877


Q ss_pred             EEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           85 TVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        85 ~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      +.-..+.....--....++++.|. +|+|.++|+++++.
T Consensus        76 ~~~g~~~~~~g~~~~~~~~~l~~~-~~gT~v~~~~~~~~  113 (146)
T cd07823          76 EATGKDARGQGTAEATVTLRLSPA-GGGTRVTVDTDLAL  113 (146)
T ss_pred             EEEEecCCCcceEEEEEEEEEEec-CCcEEEEEEEEEEE
Confidence            754311111011146778888884 56899999999988

Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.

>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]

Probab=99.08  E-value=5.8e-09  Score=75.18  Aligned_cols=109  Identities=17%  Similarity=0.232  Sum_probs=78.9

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCC--cceeeEEEEEEeeCCCCee
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGG--NFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~--~~~~~kErl~~~D~~~~~~   82 (146)
                      .++.+..|++|+++||+.+. |+.. +...+|+ ++|++. +|+.-   .-.+.+.-|.  ..-..+=++..+|+..+++
T Consensus         2 ~~~G~f~V~~p~e~Vw~~L~-dpe~-~a~ciPG-~qs~e~-~g~e~---~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~   74 (146)
T COG3427           2 DYEGTFRVAAPPEAVWEFLN-DPEQ-VAACIPG-VQSVET-NGDEY---TAKVKLKIGPLKGTFSGRVRFVNVDEPPRSI   74 (146)
T ss_pred             cccceEEecCCHHHHHHHhc-CHHH-HHhhcCC-cceeee-cCCeE---EEEEEEeecceeEEEEEEEEEccccCCCcEE
Confidence            46788999999999999998 9999 7899998 999995 46521   1122222221  0012334556668888888


Q ss_pred             EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      +...-+|..-  ..-+.++.+++.|.++| |.+.|.++-+-
T Consensus        75 ~i~g~G~~~~--g~~~~~~~v~l~~~g~g-t~v~w~~~~~~  112 (146)
T COG3427          75 TINGSGGGAA--GFADGTVDVQLEPSGEG-TRVNWFADANV  112 (146)
T ss_pred             EEEeeccccc--ceeeeeeEEEEEEcCCC-cEEEEEEEccc
Confidence            7777553332  37788899999999876 99999999887

>COG5637 Predicted integral membrane protein [Function unknown]

Probab=99.06  E-value=2.8e-09  Score=78.92  Aligned_cols=106  Identities=16%  Similarity=0.187  Sum_probs=85.5

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeec-CCcceeeEEEEEEeeCCCCee
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD-GGNFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~-g~~~~~~kErl~~~D~~~~~~   82 (146)
                      ..++.+++|++|+++||+.++ |+.+ +|.||.+ +.||++.+...     -+|+... ++..-.++-+|+ -|..+.+|
T Consensus        70 i~v~~~V~I~kPae~vy~~W~-dLe~-lP~~Mkh-l~SVkVlddkr-----SrW~~~ap~g~~v~Wea~it-~d~~~e~I  140 (217)
T COG5637          70 IEVEVQVTIDKPAEQVYAYWR-DLEN-LPLWMKH-LDSVKVLDDKR-----SRWKANAPLGLEVEWEAEIT-KDIPGERI  140 (217)
T ss_pred             eEEEEEEEeCChHHHHHHHHH-hhhh-hhHHHHh-hceeeccCCCc-----cceeEcCCCCceEEEeehhh-ccCCCcEE
Confidence            678999999999999999999 9999 9999985 99999875542     3455543 443334555655 58999999


Q ss_pred             EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      .|+-++|.-.+     -++.++|.+.++..|+|+.+.+|.+
T Consensus       141 ~W~Sl~Ga~v~-----NsG~VrF~~~pg~~t~V~v~lsY~~  176 (217)
T COG5637         141 QWESLPGARVE-----NSGAVRFYDAPGDSTEVKVTLSYRP  176 (217)
T ss_pred             eeecCCCCcCC-----CCccEEeeeCCCCceEEEEEEEecC
Confidence            99999996443     2678999999888889999999999

>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster

Probab=98.99  E-value=3.4e-08  Score=70.62  Aligned_cols=105  Identities=16%  Similarity=0.238  Sum_probs=67.3

Q ss_pred             EEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCC-cc-eeeEEEEEEeeCCCCeeEEEE
Q 032152            9 EVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGG-NF-KYAKHRIDELDKDNFRCKYTV   86 (146)
Q Consensus         9 e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~-~~-~~~kErl~~~D~~~~~~~y~i   86 (146)
                      +.+|++|+++||+++. |+.. +-+.+|+ +++++.+. +.-.+.   ++..-|. +. -..+=++..+|++++.. ..+
T Consensus         2 s~~v~a~~~~vw~~l~-D~~~-l~~ciPG-~~~~e~~~-~~~~~~---~~v~vG~i~~~~~g~~~~~~~~~~~~~~-~~~   73 (140)
T PF06240_consen    2 SFEVPAPPEKVWAFLS-DPEN-LARCIPG-VESIEKVG-DEYKGK---VKVKVGPIKGTFDGEVRITEIDPPESYT-LEF   73 (140)
T ss_dssp             EEEECS-HHHHHHHHT--HHH-HHHHSTT-EEEEEEEC-TEEEEE---EEEESCCCEEEEEEEEEEEEEETTTEEE-EEE
T ss_pred             cEEecCCHHHHHHHhc-CHHH-HHhhCCC-cEEeeecC-cEEEEE---EEEEeccEEEEEEEEEEEEEcCCCcceE-eee
Confidence            6789999999999998 9999 7899998 99988764 311122   2222221 10 12334556677777653 344


Q ss_pred             EecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           87 IEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        87 ~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      -..+...  -.+..+.+++...++++|.+.|+++++-
T Consensus        74 ~g~g~~~--~~~~~~~~~~~~~~~~~T~v~~~~~~~~  108 (140)
T PF06240_consen   74 EGRGRGG--GSSASANITLSLEDDGGTRVTWSADVEV  108 (140)
T ss_dssp             EEEECTC--CEEEEEEEEEEECCCTCEEEEEEEEEEE
T ss_pred             eccCCcc--ceEEEEEEEEEcCCCCCcEEEEEEEEEE
Confidence            3333322  3456677777776666699999999998

The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.

>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.88  E-value=1.1e-07  Score=69.16  Aligned_cols=122  Identities=15%  Similarity=0.059  Sum_probs=85.3

Q ss_pred             cEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCee
Q 032152            3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         3 ~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (146)
                      ..++..++.|+||+++||+++. |+.+ +++|.|. .      ..+-.+|....+.+...+ ......++.++|+. +++
T Consensus        10 ~~~i~~~~~i~Ap~e~Vw~alt-dp~~-~~~W~~~-~------~~~~~~G~~~~~~~~~~~-~~~~~~~v~e~~p~-~~l   78 (157)
T cd08899          10 GATLRFERLLPAPIEDVWAALT-DPER-LARWFAP-G------TGDLRVGGRVEFVMDDEE-GPNATGTILACEPP-RLL   78 (157)
T ss_pred             CeEEEEEEecCCCHHHHHHHHc-CHHH-HHhhcCC-C------CCCcccCceEEEEecCCC-CCccceEEEEEcCC-cEE
Confidence            3568899999999999999999 9999 8999984 2      123344555555554421 12456677777666 477


Q ss_pred             EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe--------chhhhhHHHHHHHHHhhCC
Q 032152           83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT--------KEKAMGLHKIVEAHLLANP  142 (146)
Q Consensus        83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~--------~~~~~~~~k~~e~~l~~~~  142 (146)
                      .|+...++ .     ....++.|++.+ |+|.++.+.++.+        .+....++..|.+|+-+.+
T Consensus        79 ~~~~~~~~-~-----~~~~~~~l~~~~-~gT~v~~~~~~~~~~~~~~~~~~GW~~~L~~Lk~~~e~~~  139 (157)
T cd08899          79 AFTWGEGG-G-----ESEVRFELAPEG-DGTRLTLTHRLLDERFGAGAVGAGWHLCLDVLEAALEGGP  139 (157)
T ss_pred             EEEecCCC-C-----CceEEEEEEEcC-CCEEEEEEEeccCchhhhhhhcccHHHHHHHHHHHHcCCC
Confidence            78775443 1     235678888875 5799999988877        4566777788888877664

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]

Probab=98.81  E-value=6.4e-08  Score=69.50  Aligned_cols=110  Identities=14%  Similarity=0.202  Sum_probs=84.5

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeE
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCK   83 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (146)
                      .+++++.-++.+|+++|+++. |... +|+++|- -+..++.+.++ ...+-.++.+-.+-.++..-|.. +++..+.|.
T Consensus         2 ~~~~~s~lv~y~a~~mF~LV~-dV~~-YP~FlP~-C~~s~v~~~~~-~~l~A~l~V~~k~i~e~F~Trv~-~~~~~~~I~   76 (146)
T COG2867           2 PQIERTALVPYSASQMFDLVN-DVES-YPEFLPW-CSASRVLERNE-RELIAELDVGFKGIRETFTTRVT-LKPTARSID   76 (146)
T ss_pred             CeeEeeeeccCCHHHHHHHHH-HHHh-Cchhccc-cccceEeccCc-ceeEEEEEEEhhheeeeeeeeee-ecCchhhhh
Confidence            467888999999999999998 9999 9999996 66667777653 23555565554432234444533 566666777


Q ss_pred             EEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           84 YTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        84 y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      -.+++|+     ++-..++|+++|.++++|.|+..++|+.
T Consensus        77 ~~l~~GP-----Fk~L~~~W~F~pl~~~~ckV~f~ldfeF  111 (146)
T COG2867          77 MKLIDGP-----FKYLKGGWQFTPLSEDACKVEFFLDFEF  111 (146)
T ss_pred             hhhhcCC-----hhhhcCceEEEECCCCceEEEEEEEeee
Confidence            7788885     7788899999998778999999999999

>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.76  E-value=2.8e-07  Score=64.95  Aligned_cols=125  Identities=14%  Similarity=0.215  Sum_probs=75.4

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY   84 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y   84 (146)
                      .++.++.|+||+++||+++. |+.. +++|.|...  .....|.+..|.   +.+..+ ......-++..+++.+ ++.|
T Consensus         2 ~i~~~i~i~a~~e~Vw~~~t-d~~~-~~~W~~~~~--~~~~~~~~~~g~---~~~~~~-~~~~~~~~i~~~~p~~-~l~~   72 (145)
T cd08898           2 RIERTILIDAPRERVWRALT-DPEH-FGQWFGVKL--GPFVVGEGATGE---ITYPGY-EHGVFPVTVVEVDPPR-RFSF   72 (145)
T ss_pred             eeEEEEEecCCHHHHHHHhc-Chhh-hhhcccccC--CCcccCCcceeE---EecCCC-CccceEEEEEEeCCCc-EEEE
Confidence            57889999999999999999 9999 899998632  111112222232   333322 1113445666665554 6777


Q ss_pred             EEEecCC---CC-cceeEEEEEEEEEEcCCCceEEEEEEE-EEe-------------chhhhhHHHHHHHHHh
Q 032152           85 TVIEGDM---LG-TILESIVYDVKFEASGNGGSICKVASE-FHT-------------KEKAMGLHKIVEAHLL  139 (146)
Q Consensus        85 ~i~eg~~---~~-~~~~~y~~t~~v~p~~~g~s~v~w~~~-y~~-------------~~~~~~~~k~~e~~l~  139 (146)
                      +......   .+ ..-.....++.|++.+ ++|.|+++.. |..             .+....++..|++||-
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le  144 (145)
T cd08898          73 RWHPPAIDPGEDYSAEPSTLVEFTLEPIA-GGTLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVE  144 (145)
T ss_pred             EecCCCcccccccCCCCceEEEEEEEecC-CcEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence            7643320   00 0122356889999986 4699999876 432             2344556666666663

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.70  E-value=1.7e-06  Score=61.67  Aligned_cols=126  Identities=13%  Similarity=0.031  Sum_probs=77.9

Q ss_pred             EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEee-cCCcceeeEEEEEEeeCCCCeeEE
Q 032152            6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA-DGGNFKYAKHRIDELDKDNFRCKY   84 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~~~~~y   84 (146)
                      ++.+..++||+++||+++- |... +.+|+...--.+...+.|-.+|..-.+.+. +++....+.=++.++|+.+ ++.|
T Consensus         2 l~i~r~~~ap~e~Vw~a~T-dpe~-l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~~~~~g~~~ei~p~~-~l~~   78 (142)
T cd07826           2 IVITREFDAPRELVFRAHT-DPEL-VKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEEMGFHGVYHEVTPPE-RIVQ   78 (142)
T ss_pred             EEEEEEECCCHHHHHHHhC-CHHH-HhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEEE
Confidence            5667899999999999998 9998 677775432222223344334444444443 2332223344566676654 4555


Q ss_pred             EEE-ecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe------------chhhhhHHHHHHHHHh
Q 032152           85 TVI-EGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT------------KEKAMGLHKIVEAHLL  139 (146)
Q Consensus        85 ~i~-eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~------------~~~~~~~~k~~e~~l~  139 (146)
                      +-- ++..    -.....++.+.+.+ |+|.++.+..|..            .+.....+..|++||.
T Consensus        79 t~~~~~~~----~~~s~v~~~l~~~~-~gT~l~l~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~  141 (142)
T cd07826          79 TEEFEGLP----DGVALETVTFTELG-GRTRLTATSRYPSKEARDGVLASGMEEGMEESYDRLDELLA  141 (142)
T ss_pred             EeEecCCC----CCceEEEEEEEECC-CCEEEEEEEEeCCHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            532 3221    12346788999975 6799999888754            2355677778888875

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.67  E-value=3.3e-06  Score=60.28  Aligned_cols=128  Identities=18%  Similarity=0.148  Sum_probs=76.9

Q ss_pred             EEEEEEEecCCHHHHHHHhhhcccccccccccc-ceeeEEEEcCCCCCCcEEEEEe--ec------CCcceeeEEEEEEe
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQ-AIKSVEILQGDGGAGSIKITNF--AD------GGNFKYAKHRIDEL   75 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~-~v~s~~~~eGdg~~Gsir~~~~--~~------g~~~~~~kErl~~~   75 (146)
                      +++.+..|+||+++||+++. |... +.+|.+. -+. +.....+..+|..-.+.+  ..      .+......=++.++
T Consensus         1 ~~~~~r~i~ap~e~Vw~a~t-d~~~-~~~W~~p~~~~-~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v   77 (146)
T cd08895           1 TDRLHRVIAAPPERVYRAFL-DPDA-LAKWLPPDGMT-GTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLEL   77 (146)
T ss_pred             CEEEEEEECCCHHHHHHHHc-CHHH-HhhcCCCCCeE-eEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEE
Confidence            35667899999999999998 9998 7787752 222 222223322333333322  22      11112334467777


Q ss_pred             eCCCCeeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe--------chhhhhHHHHHHHHHh
Q 032152           76 DKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT--------KEKAMGLHKIVEAHLL  139 (146)
Q Consensus        76 D~~~~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~--------~~~~~~~~k~~e~~l~  139 (146)
                      ++.+ ++.|+..-.+... + .....++.+++.+ |+|.++++...-+        .+....++..|++||-
T Consensus        78 ~p~~-~i~~~~~~~~~~~-~-~~~~v~~~~~~~~-~~T~lt~~~~~~~~~~~~~~~~~GW~~~l~~L~~~le  145 (146)
T cd08895          78 VPNE-RIVYTDVFDDPSL-S-GEMTMTWTLSPVS-GGTDVTIVQSGIPDGIPPEDCELGWQESLANLAALVE  145 (146)
T ss_pred             cCCC-EEEEEEEecCCCC-C-ceEEEEEEEEecC-CCEEEEEEEeCCCchhhhhHHHHHHHHHHHHHHHHhc
Confidence            7766 6667643222111 1 2347889999885 5799999987643        4556677777777763

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.66  E-value=2e-06  Score=60.91  Aligned_cols=122  Identities=16%  Similarity=0.107  Sum_probs=73.6

Q ss_pred             EEEEEEecCCHHHHHHHhhhccccccccccc-cceeeEEEEcCCCCCCcEEEEEe-ecCCcceeeEEEEEEeeCCCCeeE
Q 032152            6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVP-QAIKSVEILQGDGGAGSIKITNF-ADGGNFKYAKHRIDELDKDNFRCK   83 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P-~~v~s~~~~eGdg~~Gsir~~~~-~~g~~~~~~kErl~~~D~~~~~~~   83 (146)
                      ++.+..|+||+++||+++. |... +.+|++ +-+.. ...+.+..+|..-.+.+ .+++..-...=++.++++.+ ++.
T Consensus         2 l~~~r~i~ap~e~Vw~a~t-~p~~-l~~W~~p~~~~~-~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~e~~p~~-~l~   77 (139)
T cd08894           2 IVTTRVIDAPRDLVFAAWT-DPEH-LAQWWGPEGFTN-TTHEFDLRPGGRWRFVMHGPDGTDYPNRIVFLEIEPPE-RIV   77 (139)
T ss_pred             EEEEEEeCCCHHHHHHHhC-CHHH-HhhccCcCCCcc-eEEEEEecCCCEEEEEEECCCCCEecceEEEEEEcCCC-EEE
Confidence            5667899999999999998 9988 777764 22221 11222323344333333 23332112234667776655 677


Q ss_pred             EEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEec------------hhhhhHHHHHHHHH
Q 032152           84 YTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTK------------EKAMGLHKIVEAHL  138 (146)
Q Consensus        84 y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~~------------~~~~~~~k~~e~~l  138 (146)
                      |+...++     . ....++.++|.+ |+|.++.+..|...            +....++..|++||
T Consensus        78 ~t~~~~~-----~-~~~v~~~~~~~~-~gT~ltl~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l  137 (139)
T cd08894          78 YDHGSGP-----P-RFRLTVTFEEQG-GKTRLTWRQVFPTAAERCEKIKFGAVEGNEQTLDRLAAYL  137 (139)
T ss_pred             EEeccCC-----C-cEEEEEEEEECC-CCEEEEEEEEcCCHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            7764331     1 245789999975 67999999887651            12345556666665

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=98.66  E-value=4.2e-06  Score=62.40  Aligned_cols=117  Identities=12%  Similarity=0.099  Sum_probs=75.4

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCc---ceeeEEEEEEeeCCCC
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGN---FKYAKHRIDELDKDNF   80 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~---~~~~kErl~~~D~~~~   80 (146)
                      ..+..+..|++||+++|+++. |.+. .|+|.|. +.++++++..+.-..+-...+....+   ...+-.+-...+.++.
T Consensus        41 ~~~k~~~~i~~s~e~v~~vi~-d~e~-~~~w~~~-~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~  117 (195)
T cd08876          41 KEFKAVAEVDASIEAFLALLR-DTES-YPQWMPN-CKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDG  117 (195)
T ss_pred             EEEEEEEEEeCCHHHHHHHHh-hhHh-HHHHHhh-cceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCC
Confidence            567888899999999999998 9999 9999996 88889887543212233333332221   1122222122232234


Q ss_pred             eeEEEEEecCC--CCc----ceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           81 RCKYTVIEGDM--LGT----ILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        81 ~~~y~i~eg~~--~~~----~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      .+...+..++.  ++.    ....+.+.+.++|.++++|.+++...+++
T Consensus       118 ~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp  166 (195)
T cd08876         118 SVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADP  166 (195)
T ss_pred             EEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCC
Confidence            44444433321  110    14677888999999888999999999998

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain

Probab=98.65  E-value=1.7e-06  Score=60.19  Aligned_cols=124  Identities=13%  Similarity=0.013  Sum_probs=75.0

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY   84 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y   84 (146)
                      +++.++.|+|||++||+++. |... ++.|.++..     ..++-.+|.--.+.....+. ..+.=++.+++ +++++.|
T Consensus         1 ~~~~~~~i~ap~e~Vw~~~t-d~~~-~~~W~~~~~-----~~~~~~~G~~~~~~~~~~~~-~~~~~~v~~~~-~~~~l~~   71 (136)
T cd08893           1 KFVYVTYIRATPEKVWQALT-DPEF-TRQYWGGTT-----VESDWKVGSAFEYRRGDDGT-VDVEGEVLESD-PPRRLVH   71 (136)
T ss_pred             CeEEEEEecCCHHHHHHHHc-Cchh-hhheecccc-----cccCCcCCCeEEEEeCCCcc-cccceEEEEec-CCCeEEE
Confidence            47789999999999999999 9999 899998621     12333344433333332111 13444566666 4456667


Q ss_pred             EEEecCCCC-cceeEEEEEEEEEEcCCCceEEEEEEEEEe---------chhhhhHHHHHHHHH
Q 032152           85 TVIEGDMLG-TILESIVYDVKFEASGNGGSICKVASEFHT---------KEKAMGLHKIVEAHL  138 (146)
Q Consensus        85 ~i~eg~~~~-~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~---------~~~~~~~~k~~e~~l  138 (146)
                      +...++..+ ..-.....++.+.|.++ +|.++.+.+-.+         ...+..+++.|.++|
T Consensus        72 ~~~~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~~~~~~~~~~~~~gw~~~l~~Lk~~~  134 (136)
T cd08893          72 TWRAVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGFPPGSPTLEGVSGGWPAILSSLKTLL  134 (136)
T ss_pred             EEecCCCcccCCCCCEEEEEEEEecCC-cEEEEEEecCCCCchhHHHhhhcCHHHHHHHHHHHh
Confidence            754332210 01235677888888754 688777766433         344455666666655

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.

>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.61  E-value=7.3e-06  Score=58.26  Aligned_cols=126  Identities=21%  Similarity=0.252  Sum_probs=74.8

Q ss_pred             EEEEEEecCCHHHHHHHhhhcccccccccccc-ceeeEEEEcCCCCCCcEEEEEee-cCCcceeeEEEEEEeeCCCCeeE
Q 032152            6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQ-AIKSVEILQGDGGAGSIKITNFA-DGGNFKYAKHRIDELDKDNFRCK   83 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~-~v~s~~~~eGdg~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~~~~~   83 (146)
                      ++.+..++||+++||+++. |... +.+|+.+ .--.++..+.|-.+|..-.+.+. .++......=++.++|+.+ ++.
T Consensus         2 ~~i~r~~~ap~e~Vw~a~t-dp~~-l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~~~~~~p~~-~l~   78 (143)
T cd08900           2 FTLERTYPAPPERVFAAWS-DPAA-RARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPEITVEARYHDIVPDE-RIV   78 (143)
T ss_pred             EEEEEEeCCCHHHHHHHhc-CHHH-HHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCEEeeeEEEEEecCCc-eEE
Confidence            4566789999999999998 9998 7788753 11112222333333444334443 3333223344666676655 565


Q ss_pred             EEEE--ecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe----------chhhhhHHHHHHHHH
Q 032152           84 YTVI--EGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT----------KEKAMGLHKIVEAHL  138 (146)
Q Consensus        84 y~i~--eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~----------~~~~~~~~k~~e~~l  138 (146)
                      |+-.  .++..   ......++.+.|.+ |+|.++.+...-.          ...+..++..|+++|
T Consensus        79 ~t~~~~~~~~~---~~~s~v~~~l~~~~-~gT~l~~~~~~~~~~~~~~~~~~~~GW~~~l~~L~~~l  141 (143)
T cd08900          79 YTYTMHIGGTL---LSASLATVEFAPEG-GGTRLTLTEQGAFLDGDDDPAGREQGTAALLDNLAAEL  141 (143)
T ss_pred             EEEeeccCCcc---ccceEEEEEEEECC-CCEEEEEEEEEecccccchhhhHHHHHHHHHHHHHHHH
Confidence            6642  22211   22345788888875 5699998876521          345566677777776

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.61  E-value=8.4e-06  Score=58.19  Aligned_cols=128  Identities=15%  Similarity=0.073  Sum_probs=73.9

Q ss_pred             EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEe-ecCCcceeeEEEEEEeeCCCCeeEE
Q 032152            6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNF-ADGGNFKYAKHRIDELDKDNFRCKY   84 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~-~~g~~~~~~kErl~~~D~~~~~~~y   84 (146)
                      +..++.|+||+++||+++. |... +.+|++..=-++...+.|-.+|..-.+.+ .+++..-...=++.++|+.+ ++.|
T Consensus         2 l~i~r~i~a~~e~Vw~a~t-~pe~-~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~~i~p~~-~l~~   78 (146)
T cd08896           2 LVLSRTIDAPRELVWRAWT-EPEL-LKQWFCPKPWTTEVAELDLRPGGAFRTVMRGPDGEEFPNPGCFLEVVPGE-RLVF   78 (146)
T ss_pred             eEEEEEeCCCHHHHHHHcC-CHHH-HhccCCCCCccceEEEEEeecCcEEEEEEECCCCCEecceEEEEEEeCCC-EEEE
Confidence            4567899999999999998 9988 67776531001111122222233333333 23332222345677787766 5556


Q ss_pred             E--EEec-CCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe------------chhhhhHHHHHHHHHh
Q 032152           85 T--VIEG-DMLGTILESIVYDVKFEASGNGGSICKVASEFHT------------KEKAMGLHKIVEAHLL  139 (146)
Q Consensus        85 ~--i~eg-~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~------------~~~~~~~~k~~e~~l~  139 (146)
                      +  +.++ ++...+  ....++.++|.+ |+|.++.+..+..            .+.+..++..|++||.
T Consensus        79 t~~~~~~~~~~~~~--~~~v~~~~~~~~-~gT~Ltl~~~~~~~~~~~~~~~~~~~~GW~~~l~~L~~~l~  145 (146)
T cd08896          79 TDALTPGWRPAEKP--FMTAIITFEDEG-GGTRYTARARHWTEADRKQHEEMGFHDGWGTAADQLAALAE  145 (146)
T ss_pred             EEeecCCcCCCCCC--cEEEEEEEEecC-CcEEEEEEEEeCCHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence            5  3222 111111  146789999975 5799988766544            1335677777888774

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.52  E-value=3.6e-06  Score=59.18  Aligned_cols=119  Identities=13%  Similarity=0.160  Sum_probs=73.5

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceee--EEEEcCCCCCCcEEEEEee-cCCc-ceeeEEEEEEeeCCCC
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKS--VEILQGDGGAGSIKITNFA-DGGN-FKYAKHRIDELDKDNF   80 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s--~~~~eGdg~~Gsir~~~~~-~g~~-~~~~kErl~~~D~~~~   80 (146)
                      |++.++.++||+++||+++. |... +.+|++. ...  +...+.|-.+|..-.+.+. .++. ...+.=++.++++.+ 
T Consensus         1 ~~~~~~~~~ap~e~Vw~a~t-d~e~-~~~W~~~-~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~~-   76 (133)
T cd08897           1 KITVETTVDAPIEKVWEAWT-TPEH-ITKWNFA-SDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPHK-   76 (133)
T ss_pred             CEEEEEEeCCCHHHHHHHhC-CHHH-HhhCCCC-CCCcccceeeecCCcCCEEEEEEEcCCCCcccccceEEEEECCCC-
Confidence            46788999999999999998 9998 8899643 111  1112234344544444432 2221 112344555665554 


Q ss_pred             eeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe---------chhhhhHHHHHHHHHh
Q 032152           81 RCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT---------KEKAMGLHKIVEAHLL  139 (146)
Q Consensus        81 ~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~---------~~~~~~~~k~~e~~l~  139 (146)
                      ++.|+..++         ...++.++|.+ |+|.++.+  +.+         .+....++..|++||-
T Consensus        77 ~l~~~~~~~---------~~v~~~l~~~~-~gT~l~l~--~~~~~~~~~~~~~~GW~~~l~~L~~~le  132 (133)
T cd08897          77 LIEYTMEDG---------REVEVEFTEEG-DGTKVVET--FDAENENPVEMQRQGWQAILDNFKKYVE  132 (133)
T ss_pred             EEEEEcCCC---------CEEEEEEEECC-CCEEEEEE--ECCCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence            777886321         25689999975 56988876  433         4555677777777763

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins

Probab=98.34  E-value=6.3e-05  Score=53.82  Aligned_cols=122  Identities=19%  Similarity=0.186  Sum_probs=69.2

Q ss_pred             EEEEEEecCCHHHHHHHhhhccccccccccccce-------eeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCC
Q 032152            6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAI-------KSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKD   78 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v-------~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~   78 (146)
                      ++.++.|+||+++||+++. |  . +.+|++..-       ..+++.-..|  |..+ .. ..++. ....=++.++|+.
T Consensus         2 ~~~~~~i~Ap~e~Vw~a~t-~--~-l~~W~~p~~~~~~~~~~~~~~d~~~G--G~~~-~~-~~~g~-~~~~g~v~~v~p~   72 (149)
T cd08891           2 VRKSVTVPAPPERAFEVFT-E--G-FGAWWPPEYHFVFSPGAEVVFEPRAG--GRWY-EI-GEDGT-ECEWGTVLAWEPP   72 (149)
T ss_pred             eEEEEEecCCHHHHHHHHH-h--c-hhhccCCCcccccCCCccEEEcccCC--cEEE-Ee-cCCCc-EeceEEEEEEcCC
Confidence            6788999999999999998 8  3 456654211       2333211112  3333 22 22232 1223466677666


Q ss_pred             CCeeEEEEE-ecCCCC-cceeEEEEEEEEEEcCCCceEEEEEEEEEe---------------chhhhhHHHHHHHHH
Q 032152           79 NFRCKYTVI-EGDMLG-TILESIVYDVKFEASGNGGSICKVASEFHT---------------KEKAMGLHKIVEAHL  138 (146)
Q Consensus        79 ~~~~~y~i~-eg~~~~-~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~---------------~~~~~~~~k~~e~~l  138 (146)
                      + ++.|+-. ..+..+ ... .-..++.++|.++++|.++.+...-.               ......++..|+++|
T Consensus        73 ~-~l~~tw~~~~~~~~~~~~-~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l  147 (149)
T cd08891          73 S-RLVFTWQINADWRPDPDK-ASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAA  147 (149)
T ss_pred             C-EEEEEeccCCCcCcCCCC-ceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHh
Confidence            5 5656643 211111 011 23688999998646799998887643               233456667777665

This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci

>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT)

Probab=98.23  E-value=0.00011  Score=50.11  Aligned_cols=99  Identities=16%  Similarity=0.210  Sum_probs=59.7

Q ss_pred             cCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEEEEEecCCC
Q 032152           13 AVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGDML   92 (146)
Q Consensus        13 ~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~eg~~~   92 (146)
                      +||+++||+++. |... +.+|.+......+...  |  |+++.  ...++......=++.++++.+ ++.|+.--++..
T Consensus         1 ~ap~e~Vw~a~t-~~~~-~~~W~~~~~~~~~~~~--G--g~~~~--~~~~g~~~~~~~~v~~~~p~~-~i~~~~~~~~~~   71 (124)
T PF08327_consen    1 DAPPERVWEALT-DPEG-LAQWFTTSEAEMDFRP--G--GSFRF--MDPDGGEFGFDGTVLEVEPPE-RIVFTWRMPDDP   71 (124)
T ss_dssp             SSSHHHHHHHHH-SHHH-HHHHSEEEEEEEECST--T--EEEEE--EETTSEEEEEEEEEEEEETTT-EEEEEEEEETSS
T ss_pred             CcCHHHHHHHHC-CHhH-HhhccCCCcceeeeec--C--CEEEE--EecCCCCceeeEEEEEEeCCE-EEEEEEEccCCC
Confidence            699999999998 9998 7888322122222211  2  34443  224433223333577787766 477775333322


Q ss_pred             CcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           93 GTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        93 ~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      .  -.....++.|.+ .+++|.++.+.+=.+
T Consensus        72 ~--~~~~~v~~~~~~-~~~~T~l~~~~~~~~   99 (124)
T PF08327_consen   72 D--GPESRVTFEFEE-EGGGTRLTLTHSGFP   99 (124)
T ss_dssp             S--CEEEEEEEEEEE-ETTEEEEEEEEEEEH
T ss_pred             C--CCceEEEEEEEE-cCCcEEEEEEEEcCC
Confidence            1  235578899999 567898888875444

This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....

>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins

Probab=98.22  E-value=8.1e-05  Score=52.55  Aligned_cols=118  Identities=13%  Similarity=0.043  Sum_probs=73.2

Q ss_pred             EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEEE
Q 032152            6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYT   85 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~   85 (146)
                      ++.++.|+||+++||+++. |... +.+|.+. -.+.++.     +|..-.+.+...++  .+.=++.++++. +++.|+
T Consensus         2 ~~~~~~i~ap~e~Vw~a~t-~p~~-l~~W~~~-~~~~~~~-----~Gg~~~~~~~~~~~--~~~g~~~~~~p~-~~l~~~   70 (136)
T cd08901           2 AKTAMLIRRPVAEVFEAFV-DPEI-TTKFWFT-GSSGRLE-----EGKTVTWDWEMYGA--SVPVNVLEIEPN-KRIVIE   70 (136)
T ss_pred             eeEEEEecCCHHHHHHHhc-CHHH-hcccccc-CCCcccc-----CCCEEEEEEEccCC--ceEEEEEEEcCC-CEEEEE
Confidence            4678999999999999998 9998 7776543 2233332     23333455543322  222355667555 477777


Q ss_pred             EEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe-------------chhhhhHHHHHHHHHhh
Q 032152           86 VIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT-------------KEKAMGLHKIVEAHLLA  140 (146)
Q Consensus        86 i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------------~~~~~~~~k~~e~~l~~  140 (146)
                      --.++    +.  -..++.+.+.++|+|.++.+...-+             ...+..++..|++||.+
T Consensus        71 w~~~~----~~--s~v~~~l~~~~~ggT~ltl~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~le~  132 (136)
T cd08901          71 WGDPG----EP--TTVEWTFEELDDGRTFVTITESGFPGTDDEGLKQALGSTEGWTLVLAGLKAYLEH  132 (136)
T ss_pred             ecCCC----CC--EEEEEEEEECCCCcEEEEEEECCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence            63321    12  3478999998657899888876443             13334566777777754

SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.

>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins

Probab=98.10  E-value=0.00021  Score=49.82  Aligned_cols=100  Identities=10%  Similarity=0.070  Sum_probs=61.7

Q ss_pred             EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEEE
Q 032152            6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYT   85 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~   85 (146)
                      ++.++.|+||+++||+++. |... +.+|... ..+.+...|    |..+   +..|    .+.=++.++++.+ ++.|+
T Consensus         2 i~~~r~i~ap~e~Vw~A~T-~~e~-l~~W~~~-~~~~d~~~G----G~~~---~~~g----~~~g~~~~i~p~~-~l~~~   66 (126)
T cd08892           2 ISLTETFQVPAEELYEALT-DEER-VQAFTRS-PAKVDAKVG----GKFS---LFGG----NITGEFVELVPGK-KIVQK   66 (126)
T ss_pred             eEEEEEECCCHHHHHHHHC-CHHH-HHhhcCC-CceecCCCC----CEEE---EeCC----ceEEEEEEEcCCC-EEEEE
Confidence            5677899999999999999 9988 7788753 333333222    3333   3333    1333566666544 55555


Q ss_pred             EEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           86 VIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        86 i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      ---.+.. . -..-..++.+++. +|+|.++.+....+
T Consensus        67 w~~~~~~-~-~~~s~v~~~l~~~-~~gT~ltl~~~g~~  101 (126)
T cd08892          67 WRFKSWP-E-GHYSTVTLTFTEK-DDETELKLTQTGVP  101 (126)
T ss_pred             EEcCCCC-C-CCcEEEEEEEEEC-CCCEEEEEEEECCC
Confidence            4321211 1 1224678888887 46799888877666

This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m

>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins

Probab=97.96  E-value=0.0015  Score=50.86  Aligned_cols=134  Identities=11%  Similarity=0.129  Sum_probs=84.3

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeec--CCcce-eeEEEEEE--eeC
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFAD--GGNFK-YAKHRIDE--LDK   77 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~--g~~~~-~~kErl~~--~D~   77 (146)
                      ..+..+..+++|++++|+++. |... .++|.++ ..++++++. +...+-++ +.+..  -...+ .+--+-..  .+.
T Consensus        77 l~fk~e~~vd~s~~~v~dlL~-D~~~-R~~WD~~-~~e~evI~~id~d~~iyy-~~~p~PwPvk~RDfV~~~s~~~~~~~  152 (235)
T cd08873          77 LSFCVELKVQTCASDAFDLLS-DPFK-RPEWDPH-GRSCEEVKRVGEDDGIYH-TTMPSLTSEKPNDFVLLVSRRKPATD  152 (235)
T ss_pred             eEEEEEEEecCCHHHHHHHHh-Ccch-hhhhhhc-ccEEEEEEEeCCCcEEEE-EEcCCCCCCCCceEEEEEEEEeccCC
Confidence            357788899999999999998 9999 9999985 888998873 22223233 33332  11112 22222211  122


Q ss_pred             CC-CeeEEEEEe-cCCCC----cceeEEEEEEEEEEcCCCceEEEEEEEEEe-------------chhhhhHHHHHHHHH
Q 032152           78 DN-FRCKYTVIE-GDMLG----TILESIVYDVKFEASGNGGSICKVASEFHT-------------KEKAMGLHKIVEAHL  138 (146)
Q Consensus        78 ~~-~~~~y~i~e-g~~~~----~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------------~~~~~~~~k~~e~~l  138 (146)
                      .+ ..+...-+. .-.++    -....+.+-+.+.|.++|+|.|+...-.+|             -......+..-++||
T Consensus       153 ~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (235)
T cd08873         153 GDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYVTCNLAGLSALYCRTFHCCEQFL  232 (235)
T ss_pred             CCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCccceeeecchhhhHHHHHHHHHHHHHh
Confidence            22 222333233 11111    125678899999999888999999999999             344456677778888


Q ss_pred             hhC
Q 032152          139 LAN  141 (146)
Q Consensus       139 ~~~  141 (146)
                      ..|
T Consensus       233 ~~~  235 (235)
T cd08873         233 VTN  235 (235)
T ss_pred             ccC
Confidence            764

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an

>COG3832 Uncharacterized conserved protein [Function unknown]

Probab=97.81  E-value=0.0019  Score=46.66  Aligned_cols=101  Identities=14%  Similarity=0.096  Sum_probs=57.7

Q ss_pred             cEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCee
Q 032152            3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         3 ~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (146)
                      ..+++.+..|++|+++||+++. |... +++|+.+-=.+..+.-|.   +....+....| +.....-++.++++.. +|
T Consensus         7 ~~~~~~er~i~aP~e~Vf~A~T-dpe~-l~~W~~~~~~~~d~r~gg---~~~~~~~~~~g-~~~~~~~~~~~v~p~~-rI   79 (149)
T COG3832           7 DRTLEIERLIDAPPEKVFEALT-DPEL-LARWFMPGGAEFDARTGG---GERVRFRGPDG-PVHSFEGEYLEVVPPE-RI   79 (149)
T ss_pred             CceEEEEEeecCCHHHHHHHhc-CHHH-HHhhcCCCCCccceecCC---ceEEeeecCCC-CeeecceEEEEEcCCc-EE
Confidence            3578899999999999999999 9998 788886211111111121   22223333333 2234455666675555 55


Q ss_pred             EEEEEecCCCCcceeEEEEEEEEEEcCCC
Q 032152           83 KYTVIEGDMLGTILESIVYDVKFEASGNG  111 (146)
Q Consensus        83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g  111 (146)
                      .|+-.-.+... +...-..++.+++..+|
T Consensus        80 v~tw~~~~~~~-~~~~~~v~~~l~~~~~g  107 (149)
T COG3832          80 VFTWDFDEDGE-PFLKSLVTITLTPEDDG  107 (149)
T ss_pred             EEEeccCCCCC-cccCceEEEEEEEecCC
Confidence            56643332211 12334677888886665

>PTZ00220 Activator of HSP-90 ATPase; Provisional

Probab=97.75  E-value=0.00043  Score=48.93  Aligned_cols=110  Identities=17%  Similarity=0.243  Sum_probs=62.0

Q ss_pred             ecCCHHHHHHHhhhccccccccc-cccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEEEEEecC
Q 032152           12 AAVAPSRMFKAFFLEAHNFLPKL-VPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGD   90 (146)
Q Consensus        12 i~apa~~vw~~~~~d~~~~~p~~-~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i~eg~   90 (146)
                      ++||+++||+++- |... +.+| .+. ...+++..|    |..+.   ..+.    +.=+..++|+.+ ++.|+---.+
T Consensus         1 f~ap~e~Vw~A~T-dp~~-l~~w~~~~-~~~~d~~~G----G~f~~---~~~~----~~G~~~ev~pp~-rlv~tw~~~~   65 (132)
T PTZ00220          1 FYVPPEVLYNAFL-DAYT-LTRLSLGS-PAEMDAKVG----GKFSL---FNGS----VEGEFTELEKPK-KIVQKWRFRD   65 (132)
T ss_pred             CCCCHHHHHHHHc-CHHH-HHHHhcCC-CccccCCcC----CEEEE---ecCc----eEEEEEEEcCCC-EEEEEEecCC
Confidence            4799999999998 9987 7777 431 222222222    33332   2221    233555666665 4444432121


Q ss_pred             CCCcceeEEEEEEEEEEcCCCceEEEEEEE-EEe-------------chhhhh-HHHHHHHHH
Q 032152           91 MLGTILESIVYDVKFEASGNGGSICKVASE-FHT-------------KEKAMG-LHKIVEAHL  138 (146)
Q Consensus        91 ~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~-y~~-------------~~~~~~-~~k~~e~~l  138 (146)
                      ..+...  -..|+.++|.++|+|.++.+.. +..             .+.... ++..|+++|
T Consensus        66 ~~~~~~--s~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~ld~L~~~l  126 (132)
T PTZ00220         66 WEEDVY--SKVTIEFRAVEEDHTELKLTQTGIPSLDKFGNGGCLERCRNGWTQNFLDRFEKIL  126 (132)
T ss_pred             CCCCCc--eEEEEEEEeCCCCcEEEEEEEecCccccccCCCchhhHHHhChHHHHHHHHHHHh
Confidence            111112  2588999997667899998887 422             233344 466777665

>COG4276 Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.015  Score=41.65  Aligned_cols=111  Identities=18%  Similarity=0.191  Sum_probs=74.8

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC-CCCCcEEEEEeec-CCcc-eeeEEEEEE--eeCC
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD-GGAGSIKITNFAD-GGNF-KYAKHRIDE--LDKD   78 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd-g~~Gsir~~~~~~-g~~~-~~~kErl~~--~D~~   78 (146)
                      +++.....|+||.|.||+... ..++ +...-|...  |-.-+|+ -+.|+-....+.+ |.++ ..++-|+++  +|+.
T Consensus         2 ~tF~~~~~i~aP~E~VWafhs-rpd~-lq~LTppw~--VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~   77 (153)
T COG4276           2 GTFVYRTTITAPHEMVWAFHS-RPDA-LQRLTPPWI--VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNG   77 (153)
T ss_pred             cceEEeeEecCCHHHHhhhhc-CccH-HHhcCCCcE--EeccCCCcccceeeeeecceeecCCCCceEEEEeeecccCCc
Confidence            566777899999999999998 8887 667777533  3333453 2334433333322 3222 477888887  6655


Q ss_pred             CCeeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           79 NFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        79 ~~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      . +++=..+.|+...  + +..-+-+|.+.+ |+|++.=.+.|++
T Consensus        78 ~-~FtDv~i~gPfp~--~-~WrHtH~F~~eg-g~TvliD~Vsye~  117 (153)
T COG4276          78 S-RFTDVCITGPFPA--L-NWRHTHNFVDEG-GGTVLIDSVSYEL  117 (153)
T ss_pred             c-eeeeeeecCCccc--e-eeEEEeeeecCC-CcEEEEeeEEeec
Confidence            4 5555667776542  2 688899999875 5799999999999

>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins

Probab=97.20  E-value=0.056  Score=42.25  Aligned_cols=115  Identities=12%  Similarity=0.047  Sum_probs=69.7

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeecC-Cc--ce-eeEEEEEEeeCCC
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFADG-GN--FK-YAKHRIDELDKDN   79 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~g-~~--~~-~~kErl~~~D~~~   79 (146)
                      .+..+..+++|++++++++. |... .++|.++ +.++++++. +..-. +..++..+- ++  .+ .+.-+-...+.++
T Consensus        82 ~fK~e~~vd~s~e~v~~lL~-D~~~-r~~Wd~~-~~e~~vIe~id~~~~-vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~  157 (240)
T cd08913          82 SFKVEMVVHVDAAQAFLLLS-DLRR-RPEWDKH-YRSCELVQQVDEDDA-IYHVTSPSLSGHGKPQDFVILASRRKPCDN  157 (240)
T ss_pred             EEEEEEEEcCCHHHHHHHHh-Chhh-hhhhHhh-ccEEEEEEecCCCcE-EEEEecCCCCCCCCCCeEEEEEEEEeccCC
Confidence            45677899999999999998 9999 9999985 888998764 32222 444443321 11  12 2222111122233


Q ss_pred             C-e--eEEEEEecCCCC---c--ceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           80 F-R--CKYTVIEGDMLG---T--ILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        80 ~-~--~~y~i~eg~~~~---~--~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      . .  +....+.-+-.|   +  ...++.+-+.+.|.++|.|.+.+...-+|
T Consensus       158 g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP  209 (240)
T cd08913         158 GDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP  209 (240)
T ss_pred             CccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC
Confidence            2 1  222222222111   0  14566788999999888999988776666

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of

>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding

Probab=97.14  E-value=0.037  Score=42.21  Aligned_cols=114  Identities=10%  Similarity=-0.045  Sum_probs=71.5

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC-CCCCcEEEEEee-c--C--CcceeeEEEEEEeeCC
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD-GGAGSIKITNFA-D--G--GNFKYAKHRIDELDKD   78 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd-g~~Gsir~~~~~-~--g--~~~~~~kErl~~~D~~   78 (146)
                      .+..+.++++|++++|+++. |... .++|.+ .++++++++.- ....-++ +.+. +  .  .+-..+.-+ ...++.
T Consensus        46 ~~~ge~~v~as~~~v~~ll~-D~~~-r~~Wd~-~~~~~~vl~~~~~d~~i~y-~~~~~Pwp~~~~~RDfV~l~-~~~~~~  120 (205)
T cd08874          46 GFLGAGVIKAPLATVWKAVK-DPRT-RFLYDT-MIKTARIHKTFTEDICLVY-LVHETPLCLLKQPRDFCCLQ-VEAKEG  120 (205)
T ss_pred             eEEEEEEEcCCHHHHHHHHh-Ccch-hhhhHH-hhhheeeeeecCCCeEEEE-EEecCCCCCCCCCCeEEEEE-EEEECC
Confidence            45577899999999999998 9999 999998 59999988742 2223233 3322 1  2  111222222 223333


Q ss_pred             CC-eeEEEEEecCCCC------cceeEEEEEEEEEEc---CCCceEEEEEEEEEe
Q 032152           79 NF-RCKYTVIEGDMLG------TILESIVYDVKFEAS---GNGGSICKVASEFHT  123 (146)
Q Consensus        79 ~~-~~~y~i~eg~~~~------~~~~~y~~t~~v~p~---~~g~s~v~w~~~y~~  123 (146)
                      +. .+.-.-++-+..|      -....+.+-+.++|.   ++|.|.++..+..+|
T Consensus       121 ~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DP  175 (205)
T cd08874         121 ELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVAL  175 (205)
T ss_pred             CcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECC
Confidence            33 3322222321111      124567888999998   778899999999888

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.

>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins

Probab=96.74  E-value=0.13  Score=37.30  Aligned_cols=117  Identities=9%  Similarity=0.021  Sum_probs=69.7

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCc--c-eeeEEEEEEeeCCCC
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGN--F-KYAKHRIDELDKDNF   80 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~--~-~~~kErl~~~D~~~~   80 (146)
                      ..+..+.++++|++++++++. |... .++|-|. +.++++++..+..-.+....+....+  . ..+--+-...++++.
T Consensus        39 ~~~k~~~~i~~~~~~v~~~l~-d~~~-~~~w~~~-~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~  115 (193)
T cd00177          39 KLLKAEGVIPASPEQVFELLM-DIDL-RKKWDKN-FEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGT  115 (193)
T ss_pred             eeEEEEEEECCCHHHHHHHHh-CCch-hhchhhc-ceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCe
Confidence            456678899999999999998 9887 8999985 88888886532223444444443221  1 122222222233232


Q ss_pred             e-eEEEEEecCCCC---ccee--EEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           81 R-CKYTVIEGDMLG---TILE--SIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        81 ~-~~y~i~eg~~~~---~~~~--~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      . +...-++.+..|   +.+.  .+.+-+.++|.++++|.+++.+..++
T Consensus       116 ~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~  164 (193)
T cd00177         116 YVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDP  164 (193)
T ss_pred             EEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCC
Confidence            1 122222221111   1122  23456788998788999999999999

This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro

>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily

Probab=96.69  E-value=0.061  Score=38.77  Aligned_cols=73  Identities=16%  Similarity=0.311  Sum_probs=51.6

Q ss_pred             EEEEEecCC-------HHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCC
Q 032152            7 EKEVSAAVA-------PSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDN   79 (146)
Q Consensus         7 ~~e~~i~ap-------a~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~   79 (146)
                      +..+.||-|       .+++|+-+.....+ -..++|+ +.+|++++.++ ....|.++|++.    .++|+++ +++. 
T Consensus         3 ~~tvpIN~p~~~p~LTr~QlW~GL~~kar~-p~~Fvp~-i~~c~Vl~e~~-~~l~Rel~f~~~----~v~e~vt-~~~~-   73 (141)
T cd08863           3 EHTVPINDPGNIPTLTRAQLWRGLVLRARE-PQLFVPG-LDRCEVLSESG-TVLERELTFGPA----KIRETVT-LEPP-   73 (141)
T ss_pred             cEEEecCCCCCCCccCHHHHHhHHHhhhCC-chhcccc-cceEEEEecCC-CEEEEEEEECCc----eEEEEEE-ecCC-
Confidence            344555543       67999988745555 5577885 89999997654 246699999986    7999976 4443 


Q ss_pred             CeeEEEEEe
Q 032152           80 FRCKYTVIE   88 (146)
Q Consensus        80 ~~~~y~i~e   88 (146)
                      .++.|.+-.
T Consensus        74 ~~v~f~~~~   82 (141)
T cd08863          74 SRVHFLQAD   82 (141)
T ss_pred             cEEEEEecC
Confidence            467788765

Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins

>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins

Probab=96.67  E-value=0.21  Score=38.94  Aligned_cols=115  Identities=9%  Similarity=-0.048  Sum_probs=68.8

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeec--CCcceeeEEEEEEe-eC-C
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFAD--GGNFKYAKHRIDEL-DK-D   78 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~--g~~~~~~kErl~~~-D~-~   78 (146)
                      ..+..+..+++|++++++++. |... .++|.++ ..++++++. +..-- |..+.-.+  ..+.+.+.=+..-. .. +
T Consensus        78 l~fk~e~~vdvs~~~l~~LL~-D~~~-r~~Wd~~-~~e~~vI~qld~~~~-vY~~~~pPw~Pvk~RD~V~~~s~~~~~~d  153 (236)
T cd08914          78 LSVWVEKHVKRPAHLAYRLLS-DFTK-RPLWDPH-FLSCEVIDWVSEDDQ-IYHITCPIVNNDKPKDLVVLVSRRKPLKD  153 (236)
T ss_pred             EEEEEEEEEcCCHHHHHHHHh-Chhh-hchhHHh-hceEEEEEEeCCCcC-EEEEecCCCCCCCCceEEEEEEEEecCCC
Confidence            467788899999999999998 9999 9999986 788888764 22222 55554332  11212222111111 22 2


Q ss_pred             CCee--EEEEEecCCCC---c--ceeE-EEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           79 NFRC--KYTVIEGDMLG---T--ILES-IVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        79 ~~~~--~y~i~eg~~~~---~--~~~~-y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      +..+  .-.-+.-+..|   +  .... ..|- .+.|.++++|.|+..+--+|
T Consensus       154 g~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP  205 (236)
T cd08914         154 GNTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA  205 (236)
T ss_pred             CCEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC
Confidence            3222  22222221111   0  1344 4444 88999888999999999888

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.

>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins

Probab=96.58  E-value=0.14  Score=38.93  Aligned_cols=116  Identities=10%  Similarity=0.023  Sum_probs=67.3

Q ss_pred             EEEEEEEecCCHHHHH-HHhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeec-CCc---ceeeEEEEEEeeCC
Q 032152            5 RFEKEVSAAVAPSRMF-KAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFAD-GGN---FKYAKHRIDELDKD   78 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw-~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~-g~~---~~~~kErl~~~D~~   78 (146)
                      -+..+..+++|+++++ .++- |... .++|.+. +.++++++. +...--++.+.... ++.   -..+.-|....+..
T Consensus        50 ~~k~e~~i~~~~~~l~~~l~~-d~e~-~~~W~~~-~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~  126 (209)
T cd08905          50 VFRLEVVVDQPLDNLYSELVD-RMEQ-MGEWNPN-VKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGS  126 (209)
T ss_pred             EEEEEEEecCCHHHHHHHHHh-chhh-hceeccc-chHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCC
Confidence            3567889999999999 6665 8888 8999985 888787754 21111123222221 111   12222232223333


Q ss_pred             CCeeEEEEEecCCCC---c--ceeEEEEEEEEEEcCC--CceEEEEEEEEEe
Q 032152           79 NFRCKYTVIEGDMLG---T--ILESIVYDVKFEASGN--GGSICKVASEFHT  123 (146)
Q Consensus        79 ~~~~~y~i~eg~~~~---~--~~~~y~~t~~v~p~~~--g~s~v~w~~~y~~  123 (146)
                      +..+.....+-+..|   +  ....+.+-+.++|.++  ++|.++|.+-.+|
T Consensus       127 ~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~Dp  178 (209)
T cd08905         127 TCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDL  178 (209)
T ss_pred             cEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecC
Confidence            322211112222211   0  1455677889999865  7899999999999

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in

>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family

Probab=96.57  E-value=0.19  Score=38.12  Aligned_cols=117  Identities=12%  Similarity=0.054  Sum_probs=68.2

Q ss_pred             cEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeec---CCcceeeE--EEEEEeeC
Q 032152            3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD---GGNFKYAK--HRIDELDK   77 (146)
Q Consensus         3 ~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~---g~~~~~~k--Erl~~~D~   77 (146)
                      ...+..+..|++|++++.+++. |.+. .|.|.|. ..+.+.++..+..-.+-.+.+..   -..-..+-  -.++.+| 
T Consensus        45 ~~~~k~e~~i~~~~~~~~~vl~-d~~~-~~~W~p~-~~~~~~l~~~~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~-  120 (215)
T cd08877          45 LLSLRMEGEIDGPLFNLLALLN-EVEL-YKTWVPF-CIRSKKVKQLGRADKVCYLRVDLPWPLSNREAVFRGFGVDRLE-  120 (215)
T ss_pred             EEEEEEEEEecCChhHeEEEEe-hhhh-Hhhhccc-ceeeEEEeecCCceEEEEEEEeCceEecceEEEEEEEEEeeec-
Confidence            3567788899999999999998 9987 9999997 44545554322111222222211   11101111  1122232 


Q ss_pred             CCCeeEEEE--EecC----------CCCcc-----eeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           78 DNFRCKYTV--IEGD----------MLGTI-----LESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        78 ~~~~~~y~i--~eg~----------~~~~~-----~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      ++..+....  +..+          +++.+     ...+.+-+.++|.++|+|.+++.+..+|
T Consensus       121 ~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP  183 (215)
T cd08877         121 ENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDP  183 (215)
T ss_pred             cCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCC
Confidence            333432221  1110          11111     4677888999999888999999988888

Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a

>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function

Probab=96.38  E-value=0.081  Score=38.45  Aligned_cols=70  Identities=23%  Similarity=0.402  Sum_probs=42.1

Q ss_pred             EEEEEEecCC--------HHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeC
Q 032152            6 FEKEVSAAVA--------PSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDK   77 (146)
Q Consensus         6 ~~~e~~i~ap--------a~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~   77 (146)
                      ++..+.||-|        .++||+-+.....+ --.++|+ +.+|++++.+ +..-.|.++|+.    ..++|++. +.+
T Consensus         2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~-p~~Fvp~-i~~c~Vl~e~-~~~~~R~v~fg~----~~v~E~v~-~~~   73 (149)
T PF08982_consen    2 FEHTVPINPPGASLPVLTREQLWRGLVLKARN-PQLFVPG-IDSCEVLSES-DTVLTREVTFGG----ATVRERVT-LYP   73 (149)
T ss_dssp             EEEEEE------------HHHHHHHHHHHHH--GGGT-TT---EEEEEEE--SSEEEEEEEETT----EEEEEEEE-EET
T ss_pred             ccEEEecCCCcccCCccCHHHHHHHHHHHHhC-hhhCccc-cCeEEEEecC-CCeEEEEEEECC----cEEEEEEE-EeC
Confidence            4555666554        56899988744444 5577885 8999998654 346789999933    38999976 444


Q ss_pred             CCCeeEE
Q 032152           78 DNFRCKY   84 (146)
Q Consensus        78 ~~~~~~y   84 (146)
                      .. ++.|
T Consensus        74 ~~-~V~f   79 (149)
T PF08982_consen   74 PE-RVDF   79 (149)
T ss_dssp             TT-EEEE
T ss_pred             Cc-EEEE
Confidence            43 6666

It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.

>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins

Probab=96.30  E-value=0.33  Score=36.92  Aligned_cols=114  Identities=10%  Similarity=0.024  Sum_probs=62.9

Q ss_pred             EEEEEEEecCCHHHHH-HHhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeec-CCc--c-eeeEEEEEEeeCC
Q 032152            5 RFEKEVSAAVAPSRMF-KAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFAD-GGN--F-KYAKHRIDELDKD   78 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw-~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~-g~~--~-~~~kErl~~~D~~   78 (146)
                      .+..+..+++|++++| +++. |... .++|.+. +.++++++. +..---++.++... +++  . ..+.-|-..-+.+
T Consensus        50 ~fk~~~~v~~~~~~l~~~ll~-D~~~-~~~W~~~-~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~  126 (209)
T cd08906          50 TFILKAFMQCPAELVYQEVIL-QPEK-MVLWNKT-VSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRD  126 (209)
T ss_pred             EEEEEEEEcCCHHHHHHHHHh-Chhh-ccccCcc-chhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCC
Confidence            4677889999999998 5787 9999 9999985 888888754 21111112232221 122  1 2333333323333


Q ss_pred             CCe-eEEEEEecCCCCcceeEE------EEEEEEEE--cCCCceEEEEEEEEEe
Q 032152           79 NFR-CKYTVIEGDMLGTILESI------VYDVKFEA--SGNGGSICKVASEFHT  123 (146)
Q Consensus        79 ~~~-~~y~i~eg~~~~~~~~~y------~~t~~v~p--~~~g~s~v~w~~~y~~  123 (146)
                      +.. +..++ .-+..| +-+.|      .+-+-+.|  .++++|.++|.+-.+|
T Consensus       127 ~~i~~~~sv-~~~~~P-~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp  178 (209)
T cd08906         127 RYVSAGIST-THSHKP-PLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDL  178 (209)
T ss_pred             cEEEEEEEE-ecCCCC-CCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCC
Confidence            321 22222 222221 12222      12233444  4567899999999999

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.

>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins

Probab=96.17  E-value=0.39  Score=36.54  Aligned_cols=133  Identities=8%  Similarity=-0.032  Sum_probs=73.5

Q ss_pred             EEEEEEEe-cCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecC--Ccc-eeeEEEEEEeeCCCC
Q 032152            5 RFEKEVSA-AVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADG--GNF-KYAKHRIDELDKDNF   80 (146)
Q Consensus         5 ~~~~e~~i-~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g--~~~-~~~kErl~~~D~~~~   80 (146)
                      .+..+..+ ++|++++++++. |... .+.|.|. +..+++++.-+.--.|..+.+..-  ... ..+--|.. .+.++.
T Consensus        48 ~~k~~~~~~~~s~e~~~~~l~-D~~~-r~~Wd~~-~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~-~~~~~~  123 (222)
T cd08871          48 MIKVSAIFPDVPAETLYDVLH-DPEY-RKTWDSN-MIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSW-LEFGGE  123 (222)
T ss_pred             EEEEEEEeCCCCHHHHHHHHH-Chhh-hhhhhhh-hceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEE-EeCCCE
Confidence            35556666 699999999998 9887 8999996 666666654211123333333311  111 22222322 233332


Q ss_pred             eeE-EEEEecCCCC---cc--eeEEEEEEEEEEcCCCceEEEEEEEEEe-------------chhhhhHHHHHHHHHhhC
Q 032152           81 RCK-YTVIEGDMLG---TI--LESIVYDVKFEASGNGGSICKVASEFHT-------------KEKAMGLHKIVEAHLLAN  141 (146)
Q Consensus        81 ~~~-y~i~eg~~~~---~~--~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------------~~~~~~~~k~~e~~l~~~  141 (146)
                      .+. ..-+.-+..+   ..  ...+.+-+.++|.++++|.++|.+..++             ......+++.|.+.+.+-
T Consensus       124 ~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y  203 (222)
T cd08871         124 YIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGSLPKWVVNKATTKLAPKVMKKLHKAALKY  203 (222)
T ss_pred             EEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            221 1111211111   11  2345677889998788899999999888             333445555555555443

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe

>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins

Probab=96.13  E-value=0.4  Score=36.34  Aligned_cols=115  Identities=6%  Similarity=-0.004  Sum_probs=62.1

Q ss_pred             EEEEEEecCCHHHHHHHhhhcccc-ccccccccceeeEEEEcC-CCCCCcEEEEEee-c-C--C-cceeeEEEE-EEeeC
Q 032152            6 FEKEVSAAVAPSRMFKAFFLEAHN-FLPKLVPQAIKSVEILQG-DGGAGSIKITNFA-D-G--G-NFKYAKHRI-DELDK   77 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~~~~~d~~~-~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~-~-g--~-~~~~~kErl-~~~D~   77 (146)
                      +..+..++++++++++.+. |..+ .-++|.+. +.++++++. |+...-++. ... + +  . +-..+--|. ...++
T Consensus        48 ~k~e~~i~~s~~~~~~~l~-d~~~~~r~~W~~~-~~~~~vle~id~~~~i~~~-~~p~~~~~~vs~RDfV~~~~~~~~~d  124 (208)
T cd08903          48 YKGEGIVYATLEQVWDCLK-PAAGGLRVKWDQN-VKDFEVVEAISDDVSVCRT-VTPSAAMKIISPRDFVDVVLVKRYED  124 (208)
T ss_pred             EEEEEEecCCHHHHHHHHH-hccchhhhhhhhc-cccEEEEEEecCCEEEEEE-ecchhcCCCcCCCceEEEEEEEecCC
Confidence            6678899999999999997 7755 12899985 888888764 322222222 222 1 1  1 111222122 22233


Q ss_pred             CCCeeEEEEEecCCCC---cceeE----EEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           78 DNFRCKYTVIEGDMLG---TILES----IVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        78 ~~~~~~y~i~eg~~~~---~~~~~----y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      ....+.+..++-+..|   +.+..    ..+-++..|.++++|.++|.+-.+|
T Consensus       125 ~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~Dp  177 (208)
T cd08903         125 GTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDL  177 (208)
T ss_pred             ceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEecc
Confidence            3233333333332211   11222    2334444454567899999999999

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.

>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins

Probab=96.02  E-value=0.45  Score=35.85  Aligned_cols=131  Identities=11%  Similarity=0.053  Sum_probs=73.2

Q ss_pred             EEEEEEecCCHHHHHH-HhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeecC-Cc---ceeeEEEEEEeeCCC
Q 032152            6 FEKEVSAAVAPSRMFK-AFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFADG-GN---FKYAKHRIDELDKDN   79 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~-~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~g-~~---~~~~kErl~~~D~~~   79 (146)
                      +..+..+++||++++. ++. |.+. .++|.+. +..+++++. ++..--+......+. .+   -..+--|....++..
T Consensus        50 ~k~~~~i~~~~~~v~~~l~~-d~~~-~~~Wd~~-~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~  126 (208)
T cd08868          50 FRLTGVLDCPAEFLYNELVL-NVES-LPSWNPT-VLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENC  126 (208)
T ss_pred             EEEEEEEcCCHHHHHHHHHc-Cccc-cceecCc-ccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCe
Confidence            5667899999999986 555 8888 8999986 777777654 222111222221121 11   112222222223332


Q ss_pred             CeeEEEEEecCCCC--c---ceeEEEEEEEEEEcCC--CceEEEEEEEEEe-------------chhhhhHHHHHHHHHh
Q 032152           80 FRCKYTVIEGDMLG--T---ILESIVYDVKFEASGN--GGSICKVASEFHT-------------KEKAMGLHKIVEAHLL  139 (146)
Q Consensus        80 ~~~~y~i~eg~~~~--~---~~~~y~~t~~v~p~~~--g~s~v~w~~~y~~-------------~~~~~~~~k~~e~~l~  139 (146)
                      ..+...-++-+..|  .   ....+.+.+.++|.++  ++|.+.|.+..+|             .......++.|.+++.
T Consensus       127 ~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP~~lvN~~~~~~~~~~~~~Lr~~~~  206 (208)
T cd08868         127 YLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLPQYLVDQALASVLLDFMKHLRKRIA  206 (208)
T ss_pred             EEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCcceeeehhhHHHHHHHHHHHHHHHh
Confidence            22222223311111  0   1344567888999764  5799999999988             3444466677776664

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth

>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins

Probab=95.85  E-value=0.55  Score=35.50  Aligned_cols=132  Identities=15%  Similarity=0.116  Sum_probs=76.6

Q ss_pred             EEEEEEEEe-cCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCc-EEEEEeec---CCcceeeEEEEEEee-C
Q 032152            4 MRFEKEVSA-AVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGS-IKITNFAD---GGNFKYAKHRIDELD-K   77 (146)
Q Consensus         4 ~~~~~e~~i-~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gs-ir~~~~~~---g~~~~~~kErl~~~D-~   77 (146)
                      ..+..+.++ ++|++++++++. |... .++|.+. +.+.++++-++..|. |-.+.+..   -.+-..+--|....| +
T Consensus        50 ~~~k~~~~~~~~s~~~~~~~l~-D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~  126 (209)
T cd08870          50 YEYLVRGVFEDCTPELLRDFYW-DDEY-RKKWDET-VIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDD  126 (209)
T ss_pred             eEEEEEEEEcCCCHHHHHHHHc-Chhh-Hhhhhhh-eeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCC
Confidence            456677788 679999999998 9988 8999985 666677655421121 22222221   111123333333334 2


Q ss_pred             CCCeeEEEEEecCCCC----cceeEEEEEEEEEEc--CCCceEEEEEEEEEe-------------chhhhhHHHHHHHHH
Q 032152           78 DNFRCKYTVIEGDMLG----TILESIVYDVKFEAS--GNGGSICKVASEFHT-------------KEKAMGLHKIVEAHL  138 (146)
Q Consensus        78 ~~~~~~y~i~eg~~~~----~~~~~y~~t~~v~p~--~~g~s~v~w~~~y~~-------------~~~~~~~~k~~e~~l  138 (146)
                      ....+...-+.-+..|    -.+..|.+.+.+.|.  ++++|.+.++.--+|             ......+++.|.+.+
T Consensus       127 ~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~IP~wlvN~~~~~~~~~~l~~l~~a~  206 (209)
T cd08870         127 RSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGGIPRELAKLAVKRGMPGFLKKLENAL  206 (209)
T ss_pred             CEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCCCCHHHHHHHHHhhhHHHHHHHHHHH
Confidence            2222222222221111    137889999999998  667888888888777             344445556655544

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo

>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins

Probab=95.71  E-value=0.63  Score=35.21  Aligned_cols=132  Identities=11%  Similarity=0.016  Sum_probs=78.3

Q ss_pred             EEEEEEEEe-cCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCc-EEEEEeecC---CcceeeEEEEEEeeCC
Q 032152            4 MRFEKEVSA-AVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGS-IKITNFADG---GNFKYAKHRIDELDKD   78 (146)
Q Consensus         4 ~~~~~e~~i-~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gs-ir~~~~~~g---~~~~~~kErl~~~D~~   78 (146)
                      ..+..+.++ ++|++.+.+++. |... .++|.+. +.+.++++.+...++ +-.+.+..-   .+-..+-.|....|++
T Consensus        45 ~~~k~~~~~~d~s~~~~~~~~~-D~~~-r~~Wd~~-~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~  121 (207)
T cd08911          45 YEYKVYGSFDDVTARDFLNVQL-DLEY-RKKWDAT-AVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEE  121 (207)
T ss_pred             EEEEEEEEEcCCCHHHHHHHHh-CHHH-HHHHHhh-heeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCC
Confidence            346666666 999999999998 9998 8999985 777788775322122 222322211   1112454555556766


Q ss_pred             CCeeE--EEEEec-CCCC----cceeEEEEEEEEEEcC---CCceEEEEEEEEEe-------------chhhhhHHHHHH
Q 032152           79 NFRCK--YTVIEG-DMLG----TILESIVYDVKFEASG---NGGSICKVASEFHT-------------KEKAMGLHKIVE  135 (146)
Q Consensus        79 ~~~~~--y~i~eg-~~~~----~~~~~y~~t~~v~p~~---~g~s~v~w~~~y~~-------------~~~~~~~~k~~e  135 (146)
                      +..+.  ..-++- ..++    -.+.+|.+.+.+.|.+   +++|.+.++.--+|             .....++++.|.
T Consensus       122 ~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG~IP~~lvN~~~~~~~~~~l~~l~  201 (207)
T cd08911         122 NKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGVNIPSYITSWVAMSGMPDFLERLR  201 (207)
T ss_pred             CCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCCccCHHHHHHHHHhhccHHHHHHH
Confidence            54421  111221 1010    1267889999999973   46788877766666             344455556555


Q ss_pred             HHH
Q 032152          136 AHL  138 (146)
Q Consensus       136 ~~l  138 (146)
                      +..
T Consensus       202 ~a~  204 (207)
T cd08911         202 NAA  204 (207)
T ss_pred             HHH
Confidence            544

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.

>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria

Probab=95.49  E-value=0.63  Score=33.73  Aligned_cols=107  Identities=20%  Similarity=0.253  Sum_probs=60.1

Q ss_pred             EEEEEecCCHHHHHHHhhhcccccccccccc------ceeeEEEEcCCCCCCcEEEEE-eec-CCc--------ceeeEE
Q 032152            7 EKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQ------AIKSVEILQGDGGAGSIKITN-FAD-GGN--------FKYAKH   70 (146)
Q Consensus         7 ~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~------~v~s~~~~eGdg~~Gsir~~~-~~~-g~~--------~~~~kE   70 (146)
                      +.++++++|+++||+++. |..- +..-+..      .+.+++ .+|+|  -+++.-. +.. ..|        .....+
T Consensus         2 ~~~~~~~~~~~~v~~~~~-d~~y-~~~r~~~~g~~~~~~~~~~-~~~~g--~~v~~~~~v~~~~lP~~~~k~v~~~l~v~   76 (159)
T PF10698_consen    2 EHSVEYPAPVERVWAAFT-DEDY-WEARCAALGADNAEVESFE-VDGDG--VRVTVRQTVPADKLPSAARKFVGGDLRVT   76 (159)
T ss_pred             eEEEEcCCCHHHHHHHHc-CHHH-HHHHHHHcCCCCceEEEEE-EcCCe--EEEEEEEecChhhCCHHHHHhcCCCeEEE
Confidence            567899999999999998 7653 2222221      133333 22332  1111111 111 111        011122


Q ss_pred             EEEEe---eCCCCeeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           71 RIDEL---DKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        71 rl~~~---D~~~~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      |.+..   ++..++.+|++--.+.    --+.++++.+.|.+ ++|.+.++.+...
T Consensus        77 ~~e~w~~~~~g~~~g~~~~~~~G~----P~~~~G~~~L~~~~-~gt~~~~~g~v~v  127 (159)
T PF10698_consen   77 RTETWTPLDDGRRTGTFTVSIPGA----PVSISGTMRLRPDG-GGTRLTVEGEVKV  127 (159)
T ss_pred             EEEEEecCCCCeEEEEEEEEecCc----eEEEEEEEEEecCC-CCEEEEEEEEEEE
Confidence            33445   5677777777532222    23689999999954 5799999999887

The function is not known.

>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]

Probab=94.21  E-value=0.67  Score=35.57  Aligned_cols=104  Identities=10%  Similarity=0.088  Sum_probs=66.8

Q ss_pred             EEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEee-cCCcceeeEEEEEEeeCCCCeeEEEEEe
Q 032152           10 VSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA-DGGNFKYAKHRIDELDKDNFRCKYTVIE   88 (146)
Q Consensus        10 ~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~~~~~y~i~e   88 (146)
                      ..+..+++++|++++ |.+. +..++| .-++..+...+.+-+.+-.++.+ ++. .+...-++ .+++..++.+ ..-+
T Consensus        74 rligysp~~my~vVS-~V~~-Y~~FVP-wC~kS~V~~~~P~~~~kA~LeVGFk~l-~E~y~S~V-t~~~p~l~kt-~~~d  147 (227)
T KOG3177|consen   74 RLIGYSPSEMYSVVS-NVSE-YHEFVP-WCKKSDVTSRRPSGPLKADLEVGFKPL-DERYTSNV-TCVKPHLTKT-VCAD  147 (227)
T ss_pred             hhhCCCHHHHHHHHH-hHHH-hhcccc-ceeccceeecCCCCCceeeEEecCccc-chhheeee-EEecccceEE-eecc
Confidence            457899999999998 8888 888888 56666665443122333333332 111 02223333 3556655532 2335


Q ss_pred             cCCCCcceeEEEEEEEEEEcC--CCceEEEEEEEEEe
Q 032152           89 GDMLGTILESIVYDVKFEASG--NGGSICKVASEFHT  123 (146)
Q Consensus        89 g~~~~~~~~~y~~t~~v~p~~--~g~s~v~w~~~y~~  123 (146)
                      |.+    +......|+|.|..  .+.|.+...++|+-
T Consensus       148 ~rL----F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF  180 (227)
T KOG3177|consen  148 GRL----FNHLITIWSFKPGPNIPRTCTLDFSVSFEF  180 (227)
T ss_pred             ccH----HHhhhheeeeccCCCCCCeEEEEEEEEEEe
Confidence            543    56677889999988  47899999999998

>smart00234 START in StAR and phosphatidylcholine transfer protein

Probab=94.08  E-value=1.8  Score=32.09  Aligned_cols=134  Identities=13%  Similarity=-0.018  Sum_probs=77.8

Q ss_pred             EEEEEEEEecCCHHHHH-HHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecC-Cc---ceeeEEEEEEeeCC
Q 032152            4 MRFEKEVSAAVAPSRMF-KAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADG-GN---FKYAKHRIDELDKD   78 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw-~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g-~~---~~~~kErl~~~D~~   78 (146)
                      ..+..+..++++++++. +++. |... .++|.+. +.++++++--..-..|..+....- ++   -..+--|-...++.
T Consensus        45 ~~~k~~~~v~~~~~~~~~~~~~-d~~~-r~~Wd~~-~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~  121 (206)
T smart00234       45 EASRAVGVVPMVCADLVEELMD-DLRY-RPEWDKN-VAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVD  121 (206)
T ss_pred             EEEEEEEEEecChHHHHHHHHh-cccc-hhhCchh-cccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCC
Confidence            35667788999999855 6776 9888 8999985 777787654211134444433311 12   11222222222222


Q ss_pred             -CCeeEEEEEecCCCC---c--ceeEEEEEEEEEEcCCCceEEEEEEEEEe-------------chhhhhHHHHHHHHHh
Q 032152           79 -NFRCKYTVIEGDMLG---T--ILESIVYDVKFEASGNGGSICKVASEFHT-------------KEKAMGLHKIVEAHLL  139 (146)
Q Consensus        79 -~~~~~y~i~eg~~~~---~--~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------------~~~~~~~~k~~e~~l~  139 (146)
                       ...+...-++.+..+   .  ....+.+-+.++|.++|.|.++|....++             ......+++.+-+.|.
T Consensus       122 ~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~  201 (206)
T smart00234      122 GSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQ  201 (206)
T ss_pred             CcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHH
Confidence             223333223222111   1  13467788999999888899999999888             4444566666655554


Q ss_pred             h
Q 032152          140 A  140 (146)
Q Consensus       140 ~  140 (146)
                      .
T Consensus       202 ~  202 (206)
T smart00234      202 K  202 (206)
T ss_pred             H
Confidence            3

putative lipid-binding domain in StAR and phosphatidylcholine transfer protein

>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains

Probab=93.98  E-value=2.3  Score=33.02  Aligned_cols=131  Identities=8%  Similarity=0.034  Sum_probs=74.4

Q ss_pred             EEEEEEEec-CCHHHHHHHhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEee---cCCcceeeE-EEEEEeeCC
Q 032152            5 RFEKEVSAA-VAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFA---DGGNFKYAK-HRIDELDKD   78 (146)
Q Consensus         5 ~~~~e~~i~-apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~---~g~~~~~~k-Erl~~~D~~   78 (146)
                      .+..+.+++ ++++++.+++. |... .++|... +.+.++++- +.. -.|-...+.   +-.+-..+- -++...|+.
T Consensus        53 ~~Ka~~~v~~vt~~~~~~~l~-D~~~-r~~Wd~~-~~~~~vie~l~~~-~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~  128 (235)
T cd08872          53 PLKATHAVKGVTGHEVCHYFF-DPDV-RMDWETT-LENFHVVETLSQD-TLIFHQTHKRVWPAAQRDALFVSHIRKIPAL  128 (235)
T ss_pred             eEEEEEEECCCCHHHHHHHHh-Chhh-HHHHHhh-hheeEEEEecCCC-CEEEEEEccCCCCCCCcEEEEEEEEEecCcc
Confidence            366777888 99999999998 9998 8999985 888887754 221 111122111   110011111 111222221


Q ss_pred             C--------CeeEEEEEecCCCCcceeEEEEE-----------------EEEEEcCCCceEEEEEEEEEe----------
Q 032152           79 N--------FRCKYTVIEGDMLGTILESIVYD-----------------VKFEASGNGGSICKVASEFHT----------  123 (146)
Q Consensus        79 ~--------~~~~y~i~eg~~~~~~~~~y~~t-----------------~~v~p~~~g~s~v~w~~~y~~----------  123 (146)
                      .        -.+..++.-...++ .=.-.++.                 +.++| ++++|.+++.+-.+|          
T Consensus       129 ~~~~~~~~~vii~~Sv~h~~~P~-~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~-~~~~~~ity~~~~dPgG~iP~wvvn  206 (235)
T cd08872         129 EEPNAHDTWIVCNFSVDHDSAPL-NNKCVRAKLTVAMICQTFVSPPDGNQEITR-DNILCKITYVANVNPGGWAPASVLR  206 (235)
T ss_pred             ccccCCCeEEEEEecccCccCCC-CCCeEEEEEEeeeeeeeeeecCCCcccccC-CCCeEEEEEEEEeCCCCCccHHHHH
Confidence            1        11233322111111 11122222                 23445 467899999999999          


Q ss_pred             ---chhhhhHHHHHHHHHhhC
Q 032152          124 ---KEKAMGLHKIVEAHLLAN  141 (146)
Q Consensus       124 ---~~~~~~~~k~~e~~l~~~  141 (146)
                         +..+.++++.|.+|++.+
T Consensus       207 ~~~k~~~P~~l~~~~~~~~~~  227 (235)
T cd08872         207 AVYKREYPKFLKRFTSYVQEK  227 (235)
T ss_pred             HHHHhhchHHHHHHHHHHHHh
Confidence               677889999999999876

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg

>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=92.93  E-value=3  Score=31.23  Aligned_cols=113  Identities=10%  Similarity=0.022  Sum_probs=66.9

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeec--CCcc-eeeEEEEEEeeCCCC
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFAD--GGNF-KYAKHRIDELDKDNF   80 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~--g~~~-~~~kErl~~~D~~~~   80 (146)
                      -+..+.+++++++++++.+. |..   +.|.+. +.++++++. +... .|-...+..  ..+. ..+--|....+.++.
T Consensus        45 ~~K~~~~v~a~~~~v~~~l~-d~r---~~Wd~~-~~~~~vie~id~~~-~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g  118 (197)
T cd08869          45 LWRASTEVEAPPEEVLQRIL-RER---HLWDDD-LLQWKVVETLDEDT-EVYQYVTNSMAPHPTRDYVVLRTWRTDLPKG  118 (197)
T ss_pred             EEEEEEEeCCCHHHHHHHHH-HHH---hccchh-hheEEEEEEecCCc-EEEEEEeeCCCCCCCceEEEEEEEEecCCCC
Confidence            35788899999999999887 743   699986 777787754 2211 122222221  1122 233333333344433


Q ss_pred             e--eEEEEEec--CCCCcc--eeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           81 R--CKYTVIEG--DMLGTI--LESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        81 ~--~~y~i~eg--~~~~~~--~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      .  +...-++-  ..++..  ...+.+-+.++|.++|+|.+++.+..+|
T Consensus       119 ~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp  167 (197)
T cd08869         119 ACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDL  167 (197)
T ss_pred             cEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECC
Confidence            2  22222321  111111  3456788899998888999999999999

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul

>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins

Probab=92.66  E-value=3.3  Score=31.02  Aligned_cols=116  Identities=8%  Similarity=-0.018  Sum_probs=62.1

Q ss_pred             EEEEEEEecCCHHHHHHHhhhc--cccccccccccceeeEEEEcCCCCCCcEEEEEee-c-CC--cce-ee-EEEEEEee
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLE--AHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA-D-GG--NFK-YA-KHRIDELD   76 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d--~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~-~-g~--~~~-~~-kErl~~~D   76 (146)
                      .+..+..|+++++++.+.+. |  ... .++|-+. +.++++++.-+..=.+....+. . .+  ..+ .+ .+....++
T Consensus        47 ~~k~~~~i~~~~~~v~~~l~-d~~~~~-r~~Wd~~-~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~  123 (206)
T cd08867          47 LYRAEGIVDALPEKVIDVII-PPCGGL-RLKWDKS-LKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYE  123 (206)
T ss_pred             EEEEEEEEcCCHHHHHHHHH-hcCccc-ccccccc-ccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEEEEEEeC
Confidence            36778899999999999998 7  566 7899985 7788887653211112222221 1 11  111 11 11112233


Q ss_pred             CCCCeeEEEEEecCCCC---cc--eeEEEEEEEEEEcC--CCceEEEEEEEEEe
Q 032152           77 KDNFRCKYTVIEGDMLG---TI--LESIVYDVKFEASG--NGGSICKVASEFHT  123 (146)
Q Consensus        77 ~~~~~~~y~i~eg~~~~---~~--~~~y~~t~~v~p~~--~g~s~v~w~~~y~~  123 (146)
                      +....+...-++=+..+   +.  ...+.+-+-+.|.+  +++|.++|.+-.+|
T Consensus       124 ~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~Dp  177 (206)
T cd08867         124 DNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDL  177 (206)
T ss_pred             CCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEecc
Confidence            32222222233222111   11  12234455667754  35799999999999

This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression

>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins

Probab=92.58  E-value=3.6  Score=31.16  Aligned_cols=115  Identities=12%  Similarity=0.070  Sum_probs=66.1

Q ss_pred             EEEEEEEEec-CCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecC---Ccceee-EEEEEEeeCC
Q 032152            4 MRFEKEVSAA-VAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADG---GNFKYA-KHRIDELDKD   78 (146)
Q Consensus         4 ~~~~~e~~i~-apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g---~~~~~~-kErl~~~D~~   78 (146)
                      ..+..+.+++ ++++.+.+++. |... .++|.+. +.++.-.+.++  -.|-.+.+..-   .+-..+ .-+...+|.+
T Consensus        49 ~~~k~~~~~~~~s~~~~~~~l~-D~~~-r~~Wd~~-~~~~~~~~~~~--~~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~  123 (207)
T cd08910          49 YEYKVFGVLEDCSPSLLADVYM-DLEY-RKQWDQY-VKELYEKECDG--ETVIYWEVKYPFPLSNRDYVYIRQRRDLDVE  123 (207)
T ss_pred             EEEEEEEEEcCCCHHHHHHHHh-CHHH-HHHHHHH-HHhheeecCCC--CEEEEEEEEcCCCCCCceEEEEEEeccccCC
Confidence            3566677888 79999999998 9998 8999986 44432122222  12333333211   111122 1122234544


Q ss_pred             CCeeEE---EEEecCCCC-----cceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           79 NFRCKY---TVIEGDMLG-----TILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        79 ~~~~~y---~i~eg~~~~-----~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      +..+..   ..++-+..|     -.+..|.+.+.++|.++++|.+.+..--+|
T Consensus       124 ~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DP  176 (207)
T cd08910         124 GRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNP  176 (207)
T ss_pred             CCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCC
Confidence            432211   111111111     126789999999998778899999988888

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.

>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain

Probab=89.25  E-value=8.1  Score=29.42  Aligned_cols=115  Identities=11%  Similarity=0.118  Sum_probs=66.5

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcC-CCCCCcEEEE-EeecCCcc-eeeEEEEEEeeCCCC
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKIT-NFADGGNF-KYAKHRIDELDKDNF   80 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~-~~~~g~~~-~~~kErl~~~D~~~~   80 (146)
                      ..+..+.+++++++++...+- |.   .+.|.+. +.+.++++. +...--+... ...-..+. ..+.-|.-..|.++.
T Consensus        52 ~~~r~~~~i~a~~~~vl~~ll-d~---~~~Wd~~-~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g  126 (204)
T cd08908          52 RLWRTTIEVPAAPEEILKRLL-KE---QHLWDVD-LLDSKVIEILDSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKG  126 (204)
T ss_pred             EEEEEEEEeCCCHHHHHHHHH-hh---HHHHHHH-hhheEeeEecCCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCC
Confidence            457888999999999999997 66   4689986 555566553 2211111111 11111222 233333433344444


Q ss_pred             eeEEEEE--ecCCCC---cceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           81 RCKYTVI--EGDMLG---TILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        81 ~~~y~i~--eg~~~~---~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      .+.-...  +-+..|   -....+.+.+.++|.++|+|.++..+..+|
T Consensus       127 ~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DP  174 (204)
T cd08908         127 ACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDL  174 (204)
T ss_pred             eEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCC
Confidence            3322221  111111   024556788999999889999999999999

This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.

>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []

Probab=84.78  E-value=13  Score=27.21  Aligned_cols=134  Identities=13%  Similarity=0.112  Sum_probs=81.1

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCC--cc---eeeEEEEEEeeCC
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGG--NF---KYAKHRIDELDKD   78 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~--~~---~~~kErl~~~D~~   78 (146)
                      ..+..+..++++++++...+. +-..   .|-+. +.++++++--..-..|..+.+....  +.   ..+--|....+.+
T Consensus        46 ~~~k~~~~v~~~~~~~~~~~~-~~~~---~Wd~~-~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~  120 (206)
T PF01852_consen   46 KMFKAEGVVPASPEQVVEDLL-DDRE---QWDKM-CVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDED  120 (206)
T ss_dssp             EEEEEEEEESSCHHHHHHHHH-CGGG---HHSTT-EEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTT
T ss_pred             eEEEEEEEEcCChHHHHHHHH-hhHh---hcccc-hhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEEecc
Confidence            456778899999998888887 4443   88875 7788877642111455555544322  31   1222222222233


Q ss_pred             C-CeeEEEEEecCCCC----c--ceeEEEEEEEEEEcCCCceEEEEEEEEEe-------------chhhhhHHHHHHHHH
Q 032152           79 N-FRCKYTVIEGDMLG----T--ILESIVYDVKFEASGNGGSICKVASEFHT-------------KEKAMGLHKIVEAHL  138 (146)
Q Consensus        79 ~-~~~~y~i~eg~~~~----~--~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------------~~~~~~~~k~~e~~l  138 (146)
                      + ..+..+=++.+..+    .  ....+.+.+.++|.++|.|.+.+...-++             ......+++.+-+.|
T Consensus       121 ~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~  200 (206)
T PF01852_consen  121 GTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKAL  200 (206)
T ss_dssp             SEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3 33444334333222    1  13467788899999988899999999988             444556677777777


Q ss_pred             hhCC
Q 032152          139 LANP  142 (146)
Q Consensus       139 ~~~~  142 (146)
                      ..+.
T Consensus       201 ~~~~  204 (206)
T PF01852_consen  201 KKQK  204 (206)
T ss_dssp             HHCC
T ss_pred             HHhc
Confidence            6665

StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	146
1e09_A	159	Solution Structure Of The Major Cherry Allergen Pru		9e-38
1h2o_A	159	Solution Structure Of The Major Cherry Allergen Pru		2e-37
4a84_A	159	Crystal Structure Of Major Birch Pollen Allergen Be		4e-32
4a8u_A	159	Crystal Structure Of Native Birch Pollen Allergen B		5e-32
1fsk_A	159	Complex Formation Between A Fab Fragment Of A Monoc		5e-32
4a80_A	159	Crystal Structure Of Major Birch Pollen Allergen Be		5e-32
1llt_A	159	Birch Pollen Allergen Bet V 1 Mutant E45s Length =		7e-32
1qmr_A	159	Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E4		1e-31
1b6f_A	159	Birch Pollen Allergen Bet V 1 Length = 159		1e-31
1fm4_A	159	Crystal Structure Of The Birch Pollen Allergen Bet		2e-31
2lpx_A	170	Solution Structure Of Strawberry Allergen Fra A 1e		1e-30
3ie5_A	165	Crystal Structure Of Hyp-1 Protein From Hypericum P		3e-28
1ifv_A	155	Crystal Structure Of Pathogenesis-Related Protein L		1e-23
2bk0_A	154	Crystal Structure Of The Major Celery Allergen Api		3e-23
2k7h_A	157	Nmr Solution Structure Of Soybean Allergen Gly M 4		1e-22
2qim_A	158	Crystal Structure Of Pathogenesis-Related Protein L		3e-22
1icx_A	155	Crystal Structure Of Pathogenesis-Related Protein L		3e-22
1xdf_A	157	Crystal Structure Of Pathogenesis-Related Protein L		2e-21
1tw0_A	157	Native Crystal Structure Of Spe16 Length = 157		2e-18
2wql_A	154	Crystal Structure Of The Major Carrot Allergen Dau		1e-17
3rws_A	168	Crystal Structure Of Medicago Truncatula Nodulin 13		3e-17
2flh_A	155	Crystal Structure Of Cytokinin-Specific Binding Pro		4e-07
3us7_A	156	Crystal Structure Of Phytohormone Binding Protein F		2e-05
2i9y_A	166	Solution Structure Of Arabidopsis Thaliana Protein		7e-05
2vne_A	201	The X-Ray Structure Of Norcoclaurine Synthase From		3e-04

>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1 Length = 159

Iteration: 1
 Score =  152 bits (383), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 74/158 (46%), Positives = 98/158 (62%), Gaps = 14/158 (8%)
Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           GV  +E E ++ + P R+FKAF L+A N +PK+ PQAIK  EIL+GDGG G+IK   F +
Sbjct: 1   GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGE 60
Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
           G  + Y KH+ID +DK+N+   YT+IEGD LG  LE I Y+ K  AS +GGSI K  S +
Sbjct: 61  GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHY 120
Query: 122 HT--------------KEKAMGLHKIVEAHLLANPDLY 145
           HT              KEKA  L K++E +L  +PD Y
Sbjct: 121 HTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAY 158

>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1 Mutant E45w Length = 159

Iteration: 1
 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/158 (46%), Positives = 97/158 (61%), Gaps = 14/158 (8%)
Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           GV  +E E ++ + P R+FKAF L+A N +PK+ PQAIK  EIL GDGG G+IK   F +
Sbjct: 1   GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILWGDGGPGTIKKITFGE 60
Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
           G  + Y KH+ID +DK+N+   YT+IEGD LG  LE I Y+ K  AS +GGSI K  S +
Sbjct: 61  GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHY 120
Query: 122 HT--------------KEKAMGLHKIVEAHLLANPDLY 145
           HT              KEKA  L K++E +L  +PD Y
Sbjct: 121 HTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAY 158

>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A F30v Mutant In Complex With Deoxycholate Length = 159

Iteration: 1
 Score =  133 bits (334), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 14/158 (8%)
Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           GV  +E E ++ +  +R+FKAF L+  N +PK+ PQAI SVE ++G+GG G+IK  +F +
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
           G  FKY K R+DE+D  NF+  Y+VIEG  +G  LE I  ++K  A+ +GGSI K+++++
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 HTK------------EKAMG--LHKIVEAHLLANPDLY 145
           HTK             K MG  L + VE++LLA+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158

>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1 Isoform J Length = 159

Iteration: 1
 Score =  133 bits (334), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 69/158 (43%), Positives = 99/158 (62%), Gaps = 14/158 (8%)
Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           GV  +E E ++ +  +R+FKAF L+  N  PK+ PQAI SVE ++G+GG G+IK  +F +
Sbjct: 1   GVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
           G  FKY K R+DE+D  NF+  Y+VIEG  +G  LE I  ++K  A+ NGGSI K+ +++
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKY 120
Query: 122 HTK------------EKAMG--LHKIVEAHLLANPDLY 145
           HTK             K MG  L + VE++LLA+ D Y
Sbjct: 121 HTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAY 158

>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal Igg Antibody And The Major Allergen From Birch Pollen Bet V 1 Length = 159

Iteration: 1
 Score =  132 bits (333), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 100/158 (63%), Gaps = 14/158 (8%)
Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           GV  +E E ++ +  +R+FKAF L+  N  PK+ PQAI SVE ++G+GG G+IK  +F +
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
           G  FKY K R+DE+D  NF+  Y+VIEG  +G  LE I  ++K  A+ +GGSI K+++++
Sbjct: 61  GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 HTK------------EKAMG--LHKIVEAHLLANPDLY 145
           HTK             K MG  L + VE++LLA+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158

>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans) Length = 159

Iteration: 1
 Score =  132 bits (333), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 100/158 (63%), Gaps = 14/158 (8%)
Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           GV  +E E ++ +  +R+FKAF L+  N  PK+ PQAI SVE ++G+GG G+IK  +F +
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
           G  FKY K R+DE+D  NF+  Y+VIEG  +G  LE I  ++K  A+ +GGSI K+++++
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 HTK------------EKAMG--LHKIVEAHLLANPDLY 145
           HTK             K MG  L + VE++LLA+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158

>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s Length = 159

Iteration: 1
 Score =  132 bits (332), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 99/158 (62%), Gaps = 14/158 (8%)
Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           GV  +E E ++ +  +R+FKAF L+  N  PK+ PQAI SVE + G+GG G+IK  +F +
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
           G  FKY K R+DE+D  NF+  Y+VIEG  +G  LE I  ++K  A+ +GGSI K+++++
Sbjct: 61  GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 HTK------------EKAMG--LHKIVEAHLLANPDLY 145
           HTK             K MG  L + VE++LLA+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158

>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s, P108g Length = 159

Iteration: 1
 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 99/158 (62%), Gaps = 14/158 (8%)
Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           GV  +E E ++ +  +R+FKAF L+     P++ PQAI SVE + G+GG G+IK  +F +
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDTLFPQVAPQAISSVENISGNGGPGTIKKISFPE 60
Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
           G  FKY K R+DE+D  NF+  Y+VIEG  +G  LE I  ++K  A+G+GGSI K+++++
Sbjct: 61  GLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATGDGGSILKISNKY 120
Query: 122 HTK------------EKAMG--LHKIVEAHLLANPDLY 145
           HTK             K MG  L + VE++LLA+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158

>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1 Length = 159

Iteration: 1
 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 100/158 (63%), Gaps = 14/158 (8%)
Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           GV  +E E ++ +  +R+FKAF L+  N  PK+ PQAI SVE ++G+GG G+IK  +F +
Sbjct: 1   GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60
Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
           G  FKY K R+DE+D  NF+  Y+VIEG  +G  LE I  ++K  A+ +GGSI K+++++
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKY 120
Query: 122 HTK------------EKAMG--LHKIVEAHLLANPDLY 145
           HTK             K +G  L + VE++LLA+ D Y
Sbjct: 121 HTKGDHEVKAEQVKASKELGETLLRAVESYLLAHSDAY 158

>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l Length = 159

Iteration: 1
 Score =  130 bits (327), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/158 (42%), Positives = 99/158 (62%), Gaps = 14/158 (8%)
Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           GV  +E E ++ +  +RMFKAF L+    +PK+ PQAI SVE ++G+GG G+IK  NF +
Sbjct: 1   GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPE 60
Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
           G  FKY K R+DE+D  NF+  Y+VIEG  +G  LE I  ++K  A+ +GG + K+++++
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKY 120
Query: 122 HTK------------EKAMG--LHKIVEAHLLANPDLY 145
           HTK             K MG  L + VE++LLA+ D Y
Sbjct: 121 HTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158

>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e Length = 170

Iteration: 1
 Score =  128 bits (321), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/159 (40%), Positives = 95/159 (59%), Gaps = 14/159 (8%)
Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MGV  +E E ++ +   ++FKAF L+A N +PK+ PQA+K  EIL+GDGG G+IK   F 
Sbjct: 1   MGVYTYENEFTSDIPAPKLFKAFVLDADNLIPKIAPQAVKCAEILEGDGGPGTIKKITFG 60
Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           +G ++ Y KH+I  +DK N    Y++IEGD L   +E I Y+ K  ++ +GG+I K  S+
Sbjct: 61  EGSHYGYVKHKIHSIDKVNHTYSYSLIEGDALSENIEKIDYETKLVSAPHGGTIIKTTSK 120
Query: 121 FHT--------------KEKAMGLHKIVEAHLLANPDLY 145
           +HT              KEKA  L K++E +L  +P  Y
Sbjct: 121 YHTKGDVEIKEEHVKAGKEKAAHLFKLIEGYLKDHPSEY 159

>pdb|3IE5|A Chain A, Crystal Structure Of Hyp-1 Protein From Hypericum Perforatum (St John's Wort) Involved In Hypericin Biosynthesis Length = 165

Iteration: 1
 Score =  120 bits (300), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 88/160 (55%), Gaps = 15/160 (9%)
Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           M      KE  + +AP R+FKA  LE H  L K  P   KS EI++GDGG G++    F 
Sbjct: 7   MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFV 66
Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           DG    Y  H+ DE+D  NF CKYT+ EGD+L   +E +VY+VK EA G GGS  K+   
Sbjct: 67  DGHPLTYMLHKFDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKLEAVG-GGSKGKITVT 125
Query: 121 FHTK--------------EKAMGLHKIVEAHLLANPDLYA 146
           +H K              +KA   +K VE +L ANP+++A
Sbjct: 126 YHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLAANPEVFA 165

>pdb|1IFV|A Chain A, Crystal Structure Of Pathogenesis-Related Protein Llpr10.1b From Yellow Lupine Length = 155

Iteration: 1
 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 14/155 (9%)
Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           GV  FE E  +AVA +++FKA   ++ + +PK++ Q I+SVEI++G+GG G++K    + 
Sbjct: 1   GVFAFEDEHPSAVAQAKLFKALTKDSDDIIPKVIEQ-IQSVEIVEGNGGPGTVKKITASH 59
Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
           GG+  Y  H+ID +D+ +F   Y+++ G  L   LE I ++ K  +  +GGSI K+  +F
Sbjct: 60  GGHTSYVLHKIDAIDEASFEYNYSIVGGTGLDESLEKITFESKLLSGPDGGSIGKIKVKF 119
Query: 122 HT-------------KEKAMGLHKIVEAHLLANPD 143
           HT             K +  GL K VE ++LANP+
Sbjct: 120 HTKGDVLSDAVREEAKARGTGLFKAVEGYVLANPN 154

>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1 Length = 154

Iteration: 1
 Score =  103 bits (257), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 86/155 (55%), Gaps = 15/155 (9%)
Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MGV     E++++V+  ++F+ F ++    LPK  P A KSVEI +GDGG G++KI    
Sbjct: 1   MGVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLP 59
Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           DGG       RID ++K+     Y+VI+GD+L   +ESI   V    + +GGSICK  + 
Sbjct: 60  DGGPITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAI 119
Query: 121 FHTK--------------EKAMGLHKIVEAHLLAN 141
           FHTK              E+   L K +EA+L+AN
Sbjct: 120 FHTKGDAVVPEENIKYANEQNTALFKALEAYLIAN 154

>pdb|2K7H|A Chain A, Nmr Solution Structure Of Soybean Allergen Gly M 4 Length = 157

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 87/156 (55%), Gaps = 15/156 (9%)
Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           GV  FE E+++ VAP+ ++KA   +A N +PK +  + KSVE ++G+GG G+IK   F +
Sbjct: 1   GVFTFEDEINSPVAPATLYKALVTDADNVIPKAL-DSFKSVENVEGNGGPGTIKKITFLE 59
Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
            G  K+  H+I+ +D+ N    Y+V+ G  L    E I +D K  A  NGGS  K+  ++
Sbjct: 60  DGETKFVLHKIESIDEANLGYSYSVVGGAALPDTAEKITFDSKLVAGPNGGSAGKLTVKY 119
Query: 122 HT--------------KEKAMGLHKIVEAHLLANPD 143
            T              K KA  L K +EA+LLA+PD
Sbjct: 120 ETKGDAEPNQDELKTGKAKADALFKAIEAYLLAHPD 155

>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein Llpr-10.2b From Yellow Lupine In Complex With Cytokinin Length = 158

Iteration: 1
 Score =  100 bits (249), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 89/157 (56%), Gaps = 15/157 (9%)
Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MGV  F+ E ++ +AP++++KA   +A   +PK V + I+SVEI++G+GG G+IK   F 
Sbjct: 1   MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPKAV-ETIQSVEIVEGNGGPGTIKKLTFI 59
Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           +GG  KY  H+I+ +D+ N    Y+++ G  L   +E I ++ K     NGGSI KV  +
Sbjct: 60  EGGESKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIK 119
Query: 121 FHTK------------EKAMG--LHKIVEAHLLANPD 143
             TK             KA G    K +E++L A+PD
Sbjct: 120 IETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHPD 156

>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein Llpr10.1a From Yellow Lupine Length = 155

Iteration: 1
 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 90/155 (58%), Gaps = 14/155 (9%)
Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           G+  FE E S+ VAP++++KA   ++   +PK++ + I+SVEI++G+GG G+IK      
Sbjct: 1   GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIH 59
Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
            G+  +  H++D +D+ N    Y++I G+ L   LE I Y+ K     +GGSI K+  +F
Sbjct: 60  DGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKF 119
Query: 122 HTKE-------------KAMGLHKIVEAHLLANPD 143
           HTK              K +GL K +E ++LA+PD
Sbjct: 120 HTKGDVLSETVRDQAKFKGLGLFKAIEGYVLAHPD 154

>pdb|1XDF|A Chain A, Crystal Structure Of Pathogenesis-Related Protein Llpr-10.2a From Yellow Lupine Length = 157

Iteration: 1
 Score = 97.8 bits (242), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 15/156 (9%)
Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           GV  FE E ++ +AP+R++KA   +A   +PK V +AI+S+E ++G+GG G+IK     +
Sbjct: 1   GVFTFEDESTSTIAPARLYKALVKDADAIIPKAV-EAIQSIETVEGNGGPGTIKKLTLIE 59
Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
           GG  KY  H+I+ +D+ N R  Y+++ G  L   +E I ++ K     NGGSI KV  + 
Sbjct: 60  GGETKYVLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKI 119
Query: 122 HTK------------EKAMG--LHKIVEAHLLANPD 143
            TK             KA G    K +E +L A+P+
Sbjct: 120 ETKGDAQPNEEEGKAAKARGDAFFKAIENYLSAHPE 155

>pdb|1TW0|A Chain A, Native Crystal Structure Of Spe16 Length = 157

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 15/158 (9%)
Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           GV  F  E S++VAP++++KA   ++     K +   I+S+E+++G+GG G+IK     +
Sbjct: 1   GVFVFRDETSSSVAPAKLYKALTKDSDTIAQK-IDGPIQSIELVEGNGGVGTIKKITANE 59
Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
           G    +   ++D +D+ N    Y+++ G  L   LE + ++ K  A   GGSI KV  +F
Sbjct: 60  GDKTSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKF 119
Query: 122 HTK--------------EKAMGLHKIVEAHLLANPDLY 145
           HTK               K  G  K +E ++LANP  Y
Sbjct: 120 HTKGDAPLSDAVRDDALAKGAGFFKAIEGYVLANPAEY 157

>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1 Length = 154

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 15/155 (9%)
Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MG      E++++V+  ++F    L+    +PK    A KSVE+ +GDGGAG+++I    
Sbjct: 1   MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEV-KGDGGAGTVRIITLP 59
Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           +G        R D ++K+      TVI+GD+L   +ESI   +    + +GGSI K  + 
Sbjct: 60  EGSPITTMTVRTDAVNKEALSYDSTVIDGDILLGFIESIETHMVVVPTADGGSITKTTAI 119
Query: 121 FHTKEKAM--------------GLHKIVEAHLLAN 141
           FHTK  A+               L K +EA+L+AN
Sbjct: 120 FHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN 154

>pdb|2FLH|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein From Mung Bean In Complex With Cytokinin Length = 155

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 3  VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADG 62
          V  F  +   +V    ++     +    +PK++P  +K V++++GDGG G+I I NF   
Sbjct: 2  VKEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPE 61
Query: 63 GNFKYAKHRIDELDKDNFRCKYTVIEGDMLG 93
           +  Y +  I E D+ +      VIEG  L 
Sbjct: 62 VSPSYQREEITEFDESSHEIGLQVIEGGYLS 92

>pdb|3US7|A Chain A, Crystal Structure Of Phytohormone Binding Protein From Medicago Truncatula In Complex With Gibberellic Acid (Ga3) Length = 156

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 3   VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADG 62
           +  F  + +  V    ++ A   +    +PK++P  +K V++++GDGG G+  I NF  G
Sbjct: 2   IKEFNTQTTLNVGLEALWAAQSKDITLVVPKVLPNIVKDVQVIEGDGGVGTKLIFNFLPG 61
Query: 63  -GNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKV 117
                Y +  I E D+ +      V+EG  L   L       +F A     ++  V
Sbjct: 62  IAPVNYQREVITEYDELSHTIGLQVVEGGYLNQGLSYYKTTFQFSAISENKTLVNV 117

>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein At1g70830, A Member Of The Major Latex Protein Family Length = 166

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 3   VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGA-GSIKITNFAD 61
           V + E +V    +  +    F  + H+ + K  P  I+  ++ +GD G  GSI   N+  
Sbjct: 16  VGKLETDVEIKASADKFHHMFAGKPHH-VSKASPGNIQGCDLHEGDWGTVGSIVFWNYVH 74
Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDML 92
            G  K AK RI+ ++ D     + VIEGD++
Sbjct: 75  DGEAKVAKERIEAVEPDKNLITFRVIEGDLM 105

>pdb|2VNE|A Chain A, The X-Ray Structure Of Norcoclaurine Synthase From Thalictrum Flavum Length = 201

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 31  LPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGD 90
           LP L+P A + +EI+ GDGG G+I    F  G      K +   +D ++   K   IEG 
Sbjct: 57  LPDLLPGAFEKLEII-GDGGVGTILDXTFVPGEFPHEYKEKFILVDNEHRLKKVQXIEGG 115
Query: 91  MLGTILESIVYDVKFEASGNGGSICKVASEFHTKEKAMGLHKIVEAHLLANP 142
            L   +      +    +G    + K ++E+H K + +   KIVE  +   P
Sbjct: 116 YLDLGVTYYXDTIHVVPTGKDSCVIKSSTEYHVKPEFV---KIVEPLITTGP 164

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	146
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	6e-53
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	1e-52
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	2e-52
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	8e-52
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	7e-51
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	2e-50
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	3e-50
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	2e-49
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	8e-48
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	5e-46
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	1e-36
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	1e-18
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	6e-14
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	9e-10
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	2e-06
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	3e-06
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	1e-04
1vjh_A	122	BET V I allergen family; structural genomics, cent	6e-04
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	6e-04

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} Length = 165

 Score =  164 bits (415), Expect = 6e-53
 Identities = 64/160 (40%), Positives = 87/160 (54%), Gaps = 15/160 (9%)

Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           M      KE  + +AP R+FKA  LE H  L K  P   KS EI++GDGG G++    F 
Sbjct: 7   MAAYTIVKEEESPIAPHRLFKALVLERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFV 66

Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           DG    Y  H+ DE+D  NF CKYT+ EGD+L   +E +VY+VK EA G  GS  K+   
Sbjct: 67  DGHPLTYMLHKFDEIDAANFYCKYTLFEGDVLRDNIEKVVYEVKLEAVGG-GSKGKITVT 125

Query: 121 FHT--------------KEKAMGLHKIVEAHLLANPDLYA 146
           +H               ++KA   +K VE +L ANP+++A
Sbjct: 126 YHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLAANPEVFA 165

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A Length = 159

 Score =  162 bits (412), Expect = 1e-52
 Identities = 67/158 (42%), Positives = 97/158 (61%), Gaps = 14/158 (8%)

Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           GV  +E E ++ +  +R+FKAF L+  N  PK+ PQAI SVE ++G+GG G+IK  +F +
Sbjct: 1   GVFNYETEATSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPE 60

Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
           G  FKY K R+DE+D  NF+  Y+VIEG  +G  LE I  ++K  A+ NGGSI K+ +++
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKY 120

Query: 122 HT--------------KEKAMGLHKIVEAHLLANPDLY 145
           HT              KE    L + VE++LLA+ D Y
Sbjct: 121 HTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAY 158

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Length = 157

 Score =  162 bits (410), Expect = 2e-52
 Identities = 49/158 (31%), Positives = 81/158 (51%), Gaps = 15/158 (9%)

Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           GV  F  E S++VAP++++KA   ++     K +   I+S+E+++G+GG G+IK     +
Sbjct: 1   GVFVFRDETSSSVAPAKLYKALTKDSDTIAQK-IDGPIQSIELVEGNGGVGTIKKITANE 59

Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
           G    +   ++D +D+ N    Y+++ G  L   LE + ++ K  A   GGSI KV  +F
Sbjct: 60  GDKTSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKF 119

Query: 122 HT--------------KEKAMGLHKIVEAHLLANPDLY 145
           HT                K  G  K +E ++LANP  Y
Sbjct: 120 HTKGDAPLSDAVRDDALAKGAGFFKAIEGYVLANPAEY 157

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Length = 159

 Score =  160 bits (407), Expect = 8e-52
 Identities = 74/158 (46%), Positives = 98/158 (62%), Gaps = 14/158 (8%)

Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           GV  +E E ++ + P R+FKAF L+A N +PK+ PQAIK  EIL+GDGG G+IK   F +
Sbjct: 1   GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGE 60

Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
           G  + Y KH+ID +DK+N+   YT+IEGD LG  LE I Y+ K  AS +GGSI K  S +
Sbjct: 61  GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHY 120

Query: 122 HT--------------KEKAMGLHKIVEAHLLANPDLY 145
           HT              KEKA  L K++E +L  +PD Y
Sbjct: 121 HTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAY 158

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Length = 158

 Score =  158 bits (401), Expect = 7e-51
 Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 15/157 (9%)

Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA 60
           MGV  F+ E ++ +AP++++KA   +A   +PK   + I+SVEI++G+GG G+IK   F 
Sbjct: 1   MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPK-AVETIQSVEIVEGNGGPGTIKKLTFI 59

Query: 61  DGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE 120
           +GG  KY  H+I+ +D+ N    Y+++ G  L   +E I ++ K     NGGSI KV  +
Sbjct: 60  EGGESKYVLHKIEAIDEANLGYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIK 119

Query: 121 FHT--------------KEKAMGLHKIVEAHLLANPD 143
             T              K +     K +E++L A+PD
Sbjct: 120 IETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHPD 156

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Length = 155

 Score =  157 bits (398), Expect = 2e-50
 Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 13/153 (8%)

Query: 3   VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADG 62
           V  F  +   +V    ++     +    +PK++P  +K V++++GDGG G+I I NF   
Sbjct: 2   VKEFNTQTELSVRLEALWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPE 61

Query: 63  GNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFH 122
            +  Y +  I E D+ +      VIEG  L   L       K        ++  V   + 
Sbjct: 62  VSPSYQREEITEFDESSHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYD 121

Query: 123 T-------------KEKAMGLHKIVEAHLLANP 142
                          +  +   + +E +L    
Sbjct: 122 HDSDIEEKVTPTKTSQSTLMYLRRLERYLSNGS 154

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Length = 155

 Score =  157 bits (397), Expect = 3e-50
 Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 14/155 (9%)

Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           G+  FE E S+ VAP++++KA   ++   +PK++   I+SVEI++G+GG G+IK      
Sbjct: 1   GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEP-IQSVEIVEGNGGPGTIKKIIAIH 59

Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
            G+  +  H++D +D+ N    Y++I G+ L   LE I Y+ K     +GGSI K+  +F
Sbjct: 60  DGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKF 119

Query: 122 HT-------------KEKAMGLHKIVEAHLLANPD 143
           HT             K K +GL K +E ++LA+PD
Sbjct: 120 HTKGDVLSETVRDQAKFKGLGLFKAIEGYVLAHPD 154

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* Length = 201

 Score =  147 bits (372), Expect = 5e-46
 Identities = 30/154 (19%), Positives = 57/154 (37%), Gaps = 15/154 (9%)

Query: 6   FEKEVSAAVAPSRMFKAFF-LEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGN 64
              E+  A +   ++  +        LP L+P A + +EI+ GDGG G+I    F  G  
Sbjct: 31  IHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEII-GDGGVGTILDMTFVPGEF 89

Query: 65  FKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHTK 124
               K +   +D ++   K  +IEG  L   +   +  +    +G    + K ++E+H K
Sbjct: 90  PHEYKEKFILVDNEHRLKKVQMIEGGYLDLGVTYYMDTIHVVPTGKDSCVIKSSTEYHVK 149

Query: 125 -------------EKAMGLHKIVEAHLLANPDLY 145
                             +   +   +L +    
Sbjct: 150 PEFVKIVEPLITTGPLAAMADAISKLVLEHKSKS 183

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 166

 Score =  122 bits (308), Expect = 1e-36
 Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 17/154 (11%)

Query: 1   MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGA-GSIKITNF 59
           +G +  + E+ A    +  F   F    + + K  P  I+  ++ +GD G  GSI   N+
Sbjct: 16  VGKLETDVEIKA---SADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNY 72

Query: 60  ADGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNG-GSICKVA 118
              G  K AK RI+ ++ D     + VIEGD++    +S +  ++      G GSI    
Sbjct: 73  VHDGEAKVAKERIEAVEPDKNLITFRVIEGDLMKE-YKSFLLTIQVTPKPGGPGSIVHWH 131

Query: 119 SEFHT-----------KEKAMGLHKIVEAHLLAN 141
            E+              +  + + K ++ HLLA 
Sbjct: 132 LEYEKISEEVAHPETLLQFCVEVSKEIDEHLLAE 165

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* Length = 190

 Score = 77.1 bits (189), Expect = 1e-18
 Identities = 17/90 (18%), Positives = 36/90 (40%)

Query: 32  PKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGDM 91
           P+     +K   ++ GDG  GS++      G     +  R++ +D D+    + V+ G+ 
Sbjct: 60  PERYKHFVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRVVGGEH 119

Query: 92  LGTILESIVYDVKFEASGNGGSICKVASEF 121
                +S+    +F    +G     V   +
Sbjct: 120 RLKNYKSVTSVNEFLNQDSGKVYTVVLESY 149

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana} Length = 208

 Score = 53.6 bits (128), Expect = 9e-10
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 1/93 (1%)

Query: 32  PKLVPQAIKSVEILQGDGGA-GSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGD 90
           P++    IKS  + +      G  +  N   G     ++ R+D LD D     +++  G+
Sbjct: 79  PQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGE 138

Query: 91  MLGTILESIVYDVKFEASGNGGSICKVASEFHT 123
                 +S+    +FE       I  V  E + 
Sbjct: 139 HRLRNYKSVTTVHRFEKEEEEERIWTVVLESYV 171

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A* Length = 211

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 4/92 (4%)

Query: 32  PKLVPQAIKSVEILQGDGGA-GSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGD 90
           P+     IKS  + Q      G  +      G     +  R+D LD +     +++I G+
Sbjct: 75  PQTYKHFIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGFSIIGGE 134

Query: 91  MLGTILESIVYDVKFEASGNGGSICKVASEFH 122
                L +               I  V  E +
Sbjct: 135 HR---LTNYKSVTTVHRFEKENRIWTVVLESY 163

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C Length = 183

 Score = 43.9 bits (103), Expect = 3e-06
 Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 4/95 (4%)

Query: 29  NFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIE 88
           +   K  P  I    +       GS++  +   G     +   ++ LD +       ++ 
Sbjct: 50  DEPQKYKP-FISRCVVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGIRIVG 108

Query: 89  GDMLGTILESIVYDVKFEASGNGGSICKVASEFHT 123
           GD       S    +   +    G    +A E   
Sbjct: 109 GDHRLKNYSST---ISLHSETIDGKTGTLAIESFV 140

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana} Length = 205

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 4/83 (4%)

Query: 38  AIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILE 97
            +    +  GD   GS++  N   G     +  R++ LD +       +I GD     L+
Sbjct: 83  FVSRCTV-IGDPEIGSLREVNVKSGLPATTSTERLELLDDEEHILGIKIIGGDHR---LK 138

Query: 98  SIVYDVKFEASGNGGSICKVASE 120
           +    +        G    +  E
Sbjct: 139 NYSSILTVHPEIIEGRAGTMVIE 161

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A Length = 122

 Score = 36.5 bits (84), Expect = 6e-04
 Identities = 11/88 (12%), Positives = 27/88 (30%), Gaps = 13/88 (14%)

Query: 66  KYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNG-GSICKVASEF--- 121
           K  K  I+ +D         +   ++     +++   +     G G GS       F   
Sbjct: 34  KNGKTEIEAVDLVKKTMTIQMSGSEIQK-YFKTLKGSIAVTPIGVGDGSHVVWTFHFEKV 92

Query: 122 --------HTKEKAMGLHKIVEAHLLAN 141
                      ++++   K ++  +L  
Sbjct: 93  HKDIDDPHSIIDESVKYFKKLDEAILNF 120

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 3klx_A Length = 189

 Score = 37.4 bits (86), Expect = 6e-04
 Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 32  PKLVPQAIKSVEILQGDGGA-----GSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTV 86
           P      IKS  I     G      G+I+  +   G     +   ++ LD++     + V
Sbjct: 55  PNKYKHFIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKRILSFRV 114

Query: 87  IEGD--MLGTILESIVYDVKFEASGNGGSICKVASEF 121
           + G+  +      + V +           +  V  E 
Sbjct: 115 LGGEHRLNNYRSVTSVNEFVVLEKDKKKRVYSVVLES 151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	146
4a8u_A	159	Major pollen allergen BET V 1-J; PR-10 protein; 1.	100.0
3ie5_A	165	Phenolic oxidative coupling protein HYP-1; hyperic	100.0
3rws_A	168	MTN13 protein; zeatin, cytokinin, hormone, lucerne	100.0
2vjg_A	154	Major allergen DAU C 1; major carrot allergen, pat	100.0
1e09_A	159	PRU AV 1; allergen, major cherry allergen, pathoge	100.0
2qim_A	158	PR10.2B; trans-zeatin, cytokinin, plant hormones,	100.0
2wql_A	154	Major allergen DAU C 1; pathogenesis-related prote	100.0
1tw0_A	157	Pathogenesis-related class 10 protein SPE-16; seve	100.0
2flh_A	155	Cytokinin-specific binding protein; zeatin, pathog	100.0
1icx_A	155	Protein LLR18A, LLPR10.1A; 7-stranded beta sheet,	100.0
2vq5_A	201	S-norcoclaurine synthase; lyase, S- norcoclaurine	100.0
2i9y_A	166	Major latex protein-like protein 28 or MLP-like pr	100.0
3rt2_A	183	Abscisic acid receptor PYL10; ABA-independent PP2C	99.97
3jrs_A	208	PYL1, putative uncharacterized protein AT5G46790;	99.97
3oqu_A	205	Abscisic acid receptor PYL9; RCAR1, hormone recept	99.97
3kl1_A	190	PYL2, putative uncharacterized protein AT2G26040;	99.97
3f08_A	146	Uncharacterized protein Q6HG14; NESG Q6HG14_bachk	99.97
3k3k_A	211	Abscisic acid receptor PYR1; ABA receptor, plant h	99.96
3p51_A	160	Uncharacterized protein; structural genomics, PSI-	99.96
1vjh_A	122	BET V I allergen family; structural genomics, cent	99.96
3oji_A	189	Abscisic acid receptor PYL3; crystal, PP2C, pyraba	99.95
3qrz_A	223	Abscisic acid receptor PYL5; crystal, hormone rece	99.94
2le1_A	151	Uncharacterized protein; structural genomics, nort	99.94
3tl1_A	159	WHIE ORF VI, polyketide cyclase; helix-GRIP fold,	99.73
2d4r_A	147	Hypothetical protein TTHA0849; start domain, struc	99.73
3tfz_A	172	Cyclase; helix-GRIP, BET V1-like superfamily, bios	99.73
3tvq_A	169	Multifunctional cyclase-dehydratase-3-O-methyl TR	99.71
3ijt_A	155	SMU.440, putative uncharacterized protein; hypothe	99.65
1t17_A	148	Conserved hypothetical protein; beta-alpha-beta-BE	99.62
3ggn_A	155	Uncharacterized protein DR_A0006; structural genom	99.58
2pcs_A	162	Conserved protein; structural genomics, unknown fu	99.54
3p9v_A	161	Uncharacterized protein; structural genomics, PSI-	99.49
2ns9_A	157	Hypothetical protein APE2225; uncharacterized cons	99.47
1z94_A	147	Conserved hypothetical protein; NESG, CV1439, stru	99.19
1xuv_A	178	Hypothetical protein MM0500; alpha-beta protein, n	99.12
2leq_A	146	Uncharacterized protein; start domains, structural	99.11
2il5_A	171	Hypothetical protein; structural genomics, APC2365	99.04
2lcg_A	142	Uncharacterized protein; start domain, structural	99.03
2ldk_A	172	Uncharacterized protein; structural genomics, nort	99.0
1xn6_A	143	Hypothetical protein BC4709; structural genomics,	98.96
3eli_A	152	AHSA1, AHA1 domain protein; alpha-beta protein, st	98.95
3rd6_A	161	MLL3558 protein; structural genomics, PSI-biology,	98.95
3pu2_A	164	Uncharacterized protein; SRPBCC superfamily, PSI-b	98.95
2lak_A	160	AHSA1-like protein RHE_CH02687; NESG, structural g	98.92
3put_A	166	Hypothetical conserved protein; structural genomic	98.89
3q64_A	162	MLL3774 protein; structural genomics, PSI-biology,	98.88
2l8o_A	144	Uncharacterized protein; mixed alpha-beta protein,	98.87
1xfs_A	178	NC_840354, conserved hypothetical protein; structu	98.85
3q63_A	151	MLL2253 protein; structural genomics, PSI-biology,	98.84
2lgh_A	144	Uncharacterized protein; AHSA1, start domain, COG3	98.84
2lf2_A	175	Uncharacterized protein; NESG, structural genomics	98.83
3uid_A	168	Putative uncharacterized protein; SRPBCC superfami	98.82
3q6a_A	135	Uncharacterized protein; structural genomics, PSI-	98.8
1xn5_A	146	BH1534 unknown conserved protein; structural genom	98.76
2l9p_A	164	Uncharacterized protein; structural genomics, nort	98.76
2k5g_A	191	Uncharacterized protein; structural genomiccs, pro	98.74
3qsz_A	189	STAR-related lipid transfer protein; structural ge	98.61
2kew_A	152	Uncharacterized protein YNDB; start domain, resona	98.61
2nn5_A	184	Hypothetical protein EF_2215; structural genomics,	98.6
2qpv_A	156	Uncharacterized protein ATU1531; structural genomi	98.53
1x53_A	145	Activator of 90 kDa heat shock protein ATPase homo	98.46
4fpw_A	181	CALU16; structural genomics, PSI-biology, northeas	98.44
2luz_A	192	CALU16; structural genomics, northeast structural	98.32
1ln1_A	214	PC-TP, phosphatidylcholine transfer protein; start	98.28
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	98.28
3ni8_A	158	PFC0360W protein; heat shock, malaria, ATPase, str	98.27
2lio_A	136	Uncharacterized protein; structural genomics, nort	98.09
1zxf_A	155	CALC; SELF-sacrificing resistance protein, structu	97.81
3fo5_A	258	Thioesterase, adipose associated, isoform BFIT2; o	97.26
2ffs_A	157	Hypothetical protein PA1206; 7-stranded beta sheet	97.05
3p0l_A	221	Steroidogenic acute regulatory protein, mitochond;	96.45
1em2_A	229	MLN64 protein; beta barrel, lipid binding protein;	96.4
1jss_A	224	Stard4, cholesterol-regulated start protein 4; sta	95.47
2e3n_A	255	Lipid-transfer protein CERT; ceramide transfer, li	95.33
2r55_A	231	STAR-related lipid transfer protein 5; alpha and b	95.21
2pso_A	237	STAR-related lipid transfer protein 13; alpha and	90.59

>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A

Probab=100.00  E-value=1.6e-47  Score=279.81  Aligned_cols=144  Identities=46%  Similarity=0.806  Sum_probs=137.5

Q ss_pred             ccEEEEEEEEecCCHHHHHHHh-hhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCC
Q 032152            2 GVMRFEKEVSAAVAPSRMFKAF-FLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNF   80 (146)
Q Consensus         2 ~~~~~~~e~~i~apa~~vw~~~-~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~   80 (146)
                      |+.+++.|++|++||++||+++ + ||++++|+|+|++|++|+++||+|++||||.|+|.+|++..++||||+.+|+++|
T Consensus         1 ~~~~~~~ei~i~a~a~kvw~~~~~-d~~~l~pk~~P~~i~s~e~~eGdgg~Gsir~~~~~~g~~~~~~kErl~~iD~~~~   79 (159)
T 4a8u_A            1 GVFNYETEATSVIPAARLFKAFIL-DGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNF   79 (159)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTT-THHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSCSEEEEEEEEEETTTT
T ss_pred             CcEEEEEEEEecCCHHHHHHHHhc-CccccchhhCchhccEEEEEcCCCCCceEEEEEEecCCCccEEEEEEEEEccccC
Confidence            6899999999999999999999 7 9999889999999999999999999999999999999888899999999999999


Q ss_pred             eeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe--------------chhhhhHHHHHHHHHhhCCCCCC
Q 032152           81 RCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT--------------KEKAMGLHKIVEAHLLANPDLYA  146 (146)
Q Consensus        81 ~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~--------------~~~~~~~~k~~e~~l~~~~~~~~  146 (146)
                      +++|+++||++++++|++|+++++|.|.++|+|+++|+++|++              ++++.+++|+||+||++|||+||
T Consensus        80 ~~~y~iiegd~l~~~~~~y~~ti~v~p~~~ggs~v~wt~~y~~~~~~~~~~~~~k~~~~~~~~~~k~ie~yll~np~~~~  159 (159)
T 4a8u_A           80 KYSYSVIEGGPVGDTLEKISNEIKIVATPNGGSILKINNKYHTKGDHEVKAEQIKASKEMGETLLRAVESYLLAHSDAYN  159 (159)
T ss_dssp             EEEEEEEEETTCBTTEEEEEEEEEEEECTTSCEEEEEEEEEEESSSCCC-CHHHHHHHHHHHHHHHHHHHHHHHCTTTTC
T ss_pred             EEEEEEeeCCCCccceEEEEEEEEEEECCCCceEEEEEEEEEECCCCcCCHHHHHHHHHHHHHHHHHHHHHHhhChhhhC
Confidence            9999999999987779999999999999888999999999998              46788999999999999999997

>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0

Probab=100.00  E-value=1.4e-47  Score=281.68  Aligned_cols=144  Identities=43%  Similarity=0.747  Sum_probs=136.5

Q ss_pred             CccEEEEEEEEecCCHHHHHHHh-hhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCC
Q 032152            1 MGVMRFEKEVSAAVAPSRMFKAF-FLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDN   79 (146)
Q Consensus         1 m~~~~~~~e~~i~apa~~vw~~~-~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~   79 (146)
                      ||+++++.|++|++||++||+++ + ||++++|+|+|++|++|++++|+|++||||.|+|.+|++..++||||+.+|+++
T Consensus         7 Mg~~~~~~ev~i~a~a~kvw~~~v~-d~~~l~pk~~P~~v~s~e~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~iD~~~   85 (165)
T 3ie5_A            7 MAAYTIVKEEESPIAPHRLFKALVL-ERHQVLVKAQPHVFKSGEIIEGDGGVGTVTKITFVDGHPLTYMLHKFDEIDAAN   85 (165)
T ss_dssp             CSCEEEEEEEEESSCHHHHHHHHTT-THHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECTTSSCCEEEEEEEEEEGGG
T ss_pred             eeeEEEEEEEEecCCHHHHHHHhcC-CccccchhhCCcccceEEEecCCCCCCeEEEEEecCCCCCceEEEEEEEEchhc
Confidence            99999999999999999999995 7 999966999999999999999999999999999999988889999999999999


Q ss_pred             CeeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe--------------chhhhhHHHHHHHHHhhCCCCC
Q 032152           80 FRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT--------------KEKAMGLHKIVEAHLLANPDLY  145 (146)
Q Consensus        80 ~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~--------------~~~~~~~~k~~e~~l~~~~~~~  145 (146)
                      |+++|+++||++++++|++|+++++|+ .++|+|+++|+++|++              ++++..++|+||+||++|||+|
T Consensus        86 ~~~~Y~iieG~~l~~~~~~y~~~i~v~-~~~ggs~vkwt~~y~~~~~~~~~~e~~k~~~~~~~~~~K~ie~yllanp~~~  164 (165)
T 3ie5_A           86 FYCKYTLFEGDVLRDNIEKVVYEVKLE-AVGGGSKGKITVTYHPKPGCTVNEEEVKIGEKKAYEFYKQVEEYLAANPEVF  164 (165)
T ss_dssp             TEEEEEEEEEGGGTTTEEEEEEEEEEE-EETTEEEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred             CEEEEEEecCCCCccceEEEEEEEEEE-eCCCceEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence            999999999998866799999999999 5678999999999998              4778999999999999999999


Q ss_pred             C
Q 032152          146 A  146 (146)
Q Consensus       146 ~  146 (146)
                      |
T Consensus       165 ~  165 (165)
T 3ie5_A          165 A  165 (165)
T ss_dssp             C
T ss_pred             C
Confidence            7

>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A

Probab=100.00  E-value=9.4e-45  Score=264.80  Aligned_cols=145  Identities=51%  Similarity=0.902  Sum_probs=136.2

Q ss_pred             ccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCe
Q 032152            2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFR   81 (146)
Q Consensus         2 ~~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~   81 (146)
                      |+++++.+++|++||++||+++++|+++++|+|+|+.+++|++++|+|++||||.|+|.+|.+..+++|||+.+|+++++
T Consensus         1 ~~~~~~~e~~i~ap~~~vw~~~~~d~~~~~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~~G~~~~~~kErl~~~D~~~~~   80 (159)
T 1e09_A            1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYS   80 (159)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCSSSCEEEEEEEEEEETTTTE
T ss_pred             CcEEEEEEEEecCCHHHHHHHHhcCccccchhhChhhccEEEEEeCCCCCceEEEEEecCCCCceEEEEEEEEEcCCCCE
Confidence            68999999999999999999997799987899999889999999999999999999999876667999999999999999


Q ss_pred             eEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe--------------chhhhhHHHHHHHHHhhCCCCCC
Q 032152           82 CKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT--------------KEKAMGLHKIVEAHLLANPDLYA  146 (146)
Q Consensus        82 ~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~--------------~~~~~~~~k~~e~~l~~~~~~~~  146 (146)
                      ++|+++||+++.++|++|+++++|.|.++|+|+++|+++|++              ++.+..++|+||+||++|||+||
T Consensus        81 ~~y~iieG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~~~~~~  159 (159)
T 1e09_A           81 YSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAYN  159 (159)
T ss_dssp             EEEEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTSCC
T ss_pred             EEEEEEecccCcccceEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhChhhcC
Confidence            999999999887679999999999999888899999999999              46789999999999999999998

>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A

Probab=100.00  E-value=1.4e-44  Score=263.57  Aligned_cols=144  Identities=38%  Similarity=0.712  Sum_probs=134.5

Q ss_pred             CccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCC
Q 032152            1 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNF   80 (146)
Q Consensus         1 m~~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~   80 (146)
                      ||+++++.+++|++||++||+++++|+++++|+|+ +.+++|++++|+|++||||.|+|.+|++..+++|||+.+|++++
T Consensus         1 M~~~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~-~~i~s~~i~eGdgg~Gsir~~~~~~g~~~~~~kErl~~~D~~~~   79 (158)
T 2qim_A            1 MGVFTFQDEYTSTIAPAKLYKALVTDADIIIPKAV-ETIQSVEIVEGNGGPGTIKKLTFIEGGESKYVLHKIEAIDEANL   79 (158)
T ss_dssp             -CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHC-TTEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGT
T ss_pred             CCCEEEEEEEEecCCHHHHHHHHhcCccchhhhHH-hhCcEEEEEecCCCCCeEEEEEEcCCCcceeEEEEEEEEecCCC
Confidence            99999999999999999999999779998789999 57999999999999999999999988767899999999999999


Q ss_pred             eeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe--------------chhhhhHHHHHHHHHhhCCCCCC
Q 032152           81 RCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT--------------KEKAMGLHKIVEAHLLANPDLYA  146 (146)
Q Consensus        81 ~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~--------------~~~~~~~~k~~e~~l~~~~~~~~  146 (146)
                      +++|+++||+++++.|++|+++++|.|.++|||+++|+++|++              ++.+..++|+||+||++||| ||
T Consensus        80 ~~~y~iieG~~~~~~~~~~~~~~~v~~~~~~gs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~p~-~~  158 (158)
T 2qim_A           80 GYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIESYLSAHPD-YN  158 (158)
T ss_dssp             EEEEEEEEESSCCCSEEEEEEEEEEEECSTTCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCSS-CC
T ss_pred             EEEEEEEeccCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCcC-cC
Confidence            9999999999886669999999999999888899999999999              45789999999999999999 97

>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A

Probab=100.00  E-value=1.3e-44  Score=263.20  Aligned_cols=140  Identities=34%  Similarity=0.588  Sum_probs=130.2

Q ss_pred             CccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCC
Q 032152            1 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNF   80 (146)
Q Consensus         1 m~~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~   80 (146)
                      ||+++++.|+++++||+++|+++.+|+++|+|+|+|++++|++ ++|||++|+||.|+|..|++..+++|||+.+|+++|
T Consensus         1 mgv~~~~~E~~~~v~a~kl~ka~v~d~~~l~Pk~~P~~iks~~-veGdg~~Gsir~~t~~~g~~~~~~kErle~iD~~~~   79 (154)
T 2wql_A            1 MGAQSHSLEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVE-VKGDGGAGTVRIITLPEGSPITTMTVRTDAVNKEAL   79 (154)
T ss_dssp             --CCEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTTTCSEEE-EESSSSTTCEEEEECCTTCSCCEEEEEEEEEETTTT
T ss_pred             CCCeEEEEEEEecCCHHHHHHHHhhcccccchhhcccceeEEE-EECCCCCCeEEEEEEcCCCCceEEEEEEEEEehhhC
Confidence            9999999999999999999987655999988999999999999 589999999999999999888899999999999999


Q ss_pred             eeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe--------------chhhhhHHHHHHHHHhhC
Q 032152           81 RCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT--------------KEKAMGLHKIVEAHLLAN  141 (146)
Q Consensus        81 ~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~--------------~~~~~~~~k~~e~~l~~~  141 (146)
                      +++|+++||+.+.++|++|+++++|+|.++|+|+++|+++|++              ++.+.+++|++|+|||+|
T Consensus        80 ~~~y~iieGd~l~~~~~~~~~~ikv~p~~~ggsvvk~t~~Y~~~~~~~~~ee~~~~~~~~~~~~~KaiEayLlan  154 (154)
T 2wql_A           80 SYDSTVIDGDILLGFIESIETHMVVVPTADGGSITKTTAIFHTKGDAVVPEENIKFADAQNTALFKAIEAYLIAN  154 (154)
T ss_dssp             EEEEEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEeccccccceEEEEEEEEEeeCCCCcEEEEEEEEEEECCCCCCCHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence            9999999999887789999999999999999999999999998              345788999999999998

>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*

Probab=100.00  E-value=2.4e-43  Score=256.90  Aligned_cols=143  Identities=34%  Similarity=0.637  Sum_probs=134.1

Q ss_pred             ccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCe
Q 032152            2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFR   81 (146)
Q Consensus         2 ~~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~   81 (146)
                      |+++++.+++|++||++||+++++|+++++|+|+ +.|++|++++|+|++||||.|+|.+|++..+++|||+.+|+++|+
T Consensus         1 ~~~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~-~~i~s~~i~eG~g~~Gsir~~~~~~G~~~~~~kErl~~~D~~~~~   79 (157)
T 1tw0_A            1 GVFVFRDETSSSVAPAKLYKALTKDSDTIAQKID-GPIQSIELVEGNGGVGTIKKITANEGDKTSFVLQKVDAIDEANLG   79 (157)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHHHTGGGGGGGSC-SSEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEETTTTE
T ss_pred             CcEEEEEEEEecCCHHHHHHHHhcCcchhhhhHH-hhccEEEEEeCCCCCCeEEEEEeeCCCccceEEEEEEEEeccCCE
Confidence            6899999999999999999998779998789999 579999999999999999999999887778999999999999999


Q ss_pred             eEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe--------------chhhhhHHHHHHHHHhhCCCCC
Q 032152           82 CKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT--------------KEKAMGLHKIVEAHLLANPDLY  145 (146)
Q Consensus        82 ~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~--------------~~~~~~~~k~~e~~l~~~~~~~  145 (146)
                      ++|+++||+.+++.|++|+++++|.|.++|||+++|+++|++              ++.+..++|+||+||++|||+|
T Consensus        80 ~~y~iieGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~p~~~  157 (157)
T 1tw0_A           80 YDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVRDDALAKGAGFFKAIEGYVLANPAEY  157 (157)
T ss_dssp             EEEEEEECTTSCTTEEEEEEEEEEEECSSSSEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGC
T ss_pred             EEEEEEecCCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence            999999999886669999999999999888899999999999              4578999999999999999988

>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*

Probab=100.00  E-value=1.9e-43  Score=257.13  Aligned_cols=139  Identities=23%  Similarity=0.386  Sum_probs=129.0

Q ss_pred             CccEEEEEEEEecCCHHHHHHH-hhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecC-CcceeeEEEEEEeeCC
Q 032152            1 MGVMRFEKEVSAAVAPSRMFKA-FFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADG-GNFKYAKHRIDELDKD   78 (146)
Q Consensus         1 m~~~~~~~e~~i~apa~~vw~~-~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g-~~~~~~kErl~~~D~~   78 (146)
                      || ++++.+++|+|||++||++ ++ ||++++|+|+|+++++|+++||||++||||.|+|.+| ++ .+++|||+.+|++
T Consensus         1 M~-~~~~~e~~i~a~a~kvw~~~v~-d~~~l~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~~g~~~-~~~kErl~~iD~~   77 (155)
T 2flh_A            1 MV-KEFNTQTELSVRLEALWAVLSK-DFITVVPKVLPHIVKDVQLIEGDGGVGTILIFNFLPEVSP-SYQREEITEFDES   77 (155)
T ss_dssp             CC-EEEEEEEEESSCHHHHHHHHHT-SCTTHHHHHCTTTEEEEEEEECSSSTTCEEEEEECTTSSS-CEEEEEEEEEETT
T ss_pred             CC-cEEEEEEEecCCHHHHHHHHhc-ccccccchhccccceEEEEEcCCCCCCeEEEEEeeCCCCC-cEEEEEEEEEeCC
Confidence            99 9999999999999999999 67 9999669999999999999999999999999999988 65 7999999999999


Q ss_pred             CCeeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe-----------c--hhhhhHHHHHHHHHhhCC
Q 032152           79 NFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT-----------K--EKAMGLHKIVEAHLLANP  142 (146)
Q Consensus        79 ~~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-----------~--~~~~~~~k~~e~~l~~~~  142 (146)
                      +|+++|+++||+++..+|++|+++++|.|.++|+|+++|+++|++           +  +++..++|+||+||+++|
T Consensus        78 ~~~~~y~iieg~~l~~~~~~~~~~i~v~p~~~ggs~v~wt~~y~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~~  154 (155)
T 2flh_A           78 SHEIGLQVIEGGYLSQGLSYYKTTFKLSEIEEDKTLVNVKISYDHDSDIEEKVTPTKTSQSTLMYLRRLERYLSNGS  154 (155)
T ss_dssp             TTEEEEEEEEEGGGGTTCSEEEEEEEEEEEETTEEEEEEEEEEEC-------CCHHHHHHHHHHHHHHHHHHHC---
T ss_pred             CCEEEEEEEeccccccCceEEEEEEEEEECCCCCEEEEEEEEEEECCCCccChhHhhhHHHHHHHHHHHHHHHhhCC
Confidence            999999999999876679999999999999888999999999999           5  788999999999999997

>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A

Probab=100.00  E-value=4.9e-42  Score=249.47  Aligned_cols=142  Identities=39%  Similarity=0.714  Sum_probs=132.5

Q ss_pred             ccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCe
Q 032152            2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFR   81 (146)
Q Consensus         2 ~~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~   81 (146)
                      |+++++.+++|++||++||+++++|+++++|+|+ +.|++|++++|+|++||||.|+|.+|++..+++|||+.+|+++|+
T Consensus         1 ~~~~~~~e~~i~a~a~kvw~~~~~d~~~~~pk~~-~~i~s~~i~eG~g~~Gsir~~~~~~G~~~~~~kErl~~~D~~~~~   79 (155)
T 1icx_A            1 GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVI-EPIQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLT   79 (155)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHS-TTEEEEEEEESSSSTTCEEEEEEESSSSEEEEEEEEEEEEGGGTE
T ss_pred             CcEEEEEEEEecCCHHHHHHHHhcCcchhcchhh-hhccEEEEEecCCCCCeEEEEEEecCCcceeEEEEEEEEeccCCE
Confidence            6899999999999999999998779998789999 579999999999999999999999887778999999999999999


Q ss_pred             eEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe-------------chhhhhHHHHHHHHHhhCCCC
Q 032152           82 CKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT-------------KEKAMGLHKIVEAHLLANPDL  144 (146)
Q Consensus        82 ~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------------~~~~~~~~k~~e~~l~~~~~~  144 (146)
                      ++|+++||+.+++.|++|+++++|.|.++|||+++|+++|++             ++++..++|+||+||++|||+
T Consensus        80 ~~y~iieGd~~~~~~~~~~~~~~v~~~~~~gs~v~w~~~y~~~~~~~~~~~~~~~~~~~~~~~k~ie~yll~~p~~  155 (155)
T 1icx_A           80 YNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDVLSETVRDQAKFKGLGLFKAIEGYVLAHPDY  155 (155)
T ss_dssp             EEEEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEEEEESSSSCCHHHHTTHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             EEEEEEecCCCccceEEEEEEEEEEecCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            999999999886669999999999998877899999999998             457899999999999999985

>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*

Probab=100.00  E-value=2.5e-41  Score=255.03  Aligned_cols=142  Identities=21%  Similarity=0.344  Sum_probs=132.1

Q ss_pred             Ccc-EEEEEEEEecCCHHHHHHHhhh-ccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCC
Q 032152            1 MGV-MRFEKEVSAAVAPSRMFKAFFL-EAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKD   78 (146)
Q Consensus         1 m~~-~~~~~e~~i~apa~~vw~~~~~-d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~   78 (146)
                      |++ ++++.+++|+|||++||+++.+ ||++++|+|+|+++++|+++ |||++||||.|+|.+|++..++||||+.+|++
T Consensus        25 ~~~~g~~~~eveI~apa~kvW~~~v~~df~~l~pk~~P~~i~s~e~~-GdGg~GsIR~lt~~~G~~~~~vkErle~iDde  103 (201)
T 2vq5_A           25 STVTKVIHHELEVAASADDIWTVYSWPGLAKHLPDLLPGAFEKLEII-GDGGVGTILDMTFVPGEFPHEYKEKFILVDNE  103 (201)
T ss_dssp             CCEEEEEEEEEEESSCHHHHHHHHTCGGGGGGHHHHSTTSCSEEEEE-SSSSTTCEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred             cccceEEEEEEEecCCHHHHHhhhhcCCcccchhhhCcccceEEEEe-cCCCCCeEEEEEecCCCcccEEEEEEEEEchh
Confidence            443 7899999999999999999876 89997799999999999999 99999999999999987778999999999999


Q ss_pred             CCeeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe-------------chhhhhHHHHHHHHHhhCCC
Q 032152           79 NFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT-------------KEKAMGLHKIVEAHLLANPD  143 (146)
Q Consensus        79 ~~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------------~~~~~~~~k~~e~~l~~~~~  143 (146)
                      +|+++|+++||+++..+|++|+++++|.|.++|+|+++|+++|++             ++++..++|+||+||++|||
T Consensus       104 ~~~~sYsiieGd~l~~~~~~y~~tikv~p~~dggs~vkWt~~ye~~~~~~~~~e~~~~~~~~~~~~KaiE~yLlanp~  181 (201)
T 2vq5_A          104 HRLKKVQMIEGGYLDLGVTYYMDTIHVVPTGKDSCVIKSSTEYHVKPEFVKIVEPLITTGPLAAMADAISKLVLEHKS  181 (201)
T ss_dssp             TTEEEEEEEEEGGGGTTEEEEEEEEEEEEEETTEEEEEEEEEEEECGGGHHHHTTTCCSHHHHHHHHHHHHHHHSCCC
T ss_pred             hCEEEEEEEecCccccceeEEEEEEEEEECCCCCeEEEEEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHHhCcc
Confidence            999999999999876679999999999999888999999999999             46789999999999999997

>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=100.00  E-value=8.3e-40  Score=240.29  Aligned_cols=140  Identities=26%  Similarity=0.467  Sum_probs=129.3

Q ss_pred             Ccc-EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC-CCCCcEEEEEeecCCcceeeEEEEEEeeCC
Q 032152            1 MGV-MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD-GGAGSIKITNFADGGNFKYAKHRIDELDKD   78 (146)
Q Consensus         1 m~~-~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd-g~~Gsir~~~~~~g~~~~~~kErl~~~D~~   78 (146)
                      |+. ++++.+++|+|||++||+++++|++. +|+|+|+.|++|++++|+ |++||||.|+|..|++..+++|||+.+|++
T Consensus        13 ~~~~~k~~~ev~i~apa~kvw~~~~~d~~~-lpk~~P~~i~s~~~~eGd~gg~Gsir~~~~~~gg~~~~~kErl~~iD~~   91 (166)
T 2i9y_A           13 SSLVGKLETDVEIKASADKFHHMFAGKPHH-VSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDGEAKVAKERIEAVEPD   91 (166)
T ss_dssp             SSSEEEEEEEEEESSCHHHHHGGGSSCSSC-CCCSCSSCCSSCCCCSCCSCSTTCCCEEEEEETTEEEEEEEEEEEEETT
T ss_pred             cCCccEEEEEEEecCCHHHHHHHHhccccc-ccccccccceEEEEEcCCCCCCCeEEEEEEecCCCceEEEEEEEEEecc
Confidence            455 89999999999999999997658887 899999889999999999 899999999999998888999999999999


Q ss_pred             CCeeEEEEEecCCCCcceeEEEEEEEEEEcCCC-ceEEEEEEEEEe-----------chhhhhHHHHHHHHHhhCC
Q 032152           79 NFRCKYTVIEGDMLGTILESIVYDVKFEASGNG-GSICKVASEFHT-----------KEKAMGLHKIVEAHLLANP  142 (146)
Q Consensus        79 ~~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g-~s~v~w~~~y~~-----------~~~~~~~~k~~e~~l~~~~  142 (146)
                      +++++|+++||+++ .+|++|.++++|.|.++| ||+|+|+++|++           ++++..++|+||+||++||
T Consensus        92 ~~~~~y~iieGd~~-~~~~~~~~ti~v~p~~~g~gs~v~wt~~ye~~~~~~~~p~~~~~~~~~~~k~ie~~l~~~~  166 (166)
T 2i9y_A           92 KNLITFRVIEGDLM-KEYKSFLLTIQVTPKPGGPGSIVHWHLEYEKISEEVAHPETLLQFCVEVSKEIDEHLLAEE  166 (166)
T ss_dssp             TTEEEEEECCTTGG-GTEEEEEEEEEEEEEEETTEEEEEEEEEEEESSTTTCCTHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CcEEEEEEEeCCCC-CCeeEEEEEEEEEECCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhhCC
Confidence            99999999999984 579999999999998654 899999999998           6789999999999999986

>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C

Probab=99.97  E-value=3.9e-30  Score=191.45  Aligned_cols=111  Identities=14%  Similarity=0.184  Sum_probs=100.4

Q ss_pred             EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152            6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY   84 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y   84 (146)
                      ...+.+|+|||++||++++ ||++ +|+|+| .|++| .++| +|++|+||.++|.+|.+..+++|||+++|+++|+++|
T Consensus        29 ~~v~~~I~Apa~~VW~~v~-df~~-l~~w~P-~V~s~-~~eG~~ggvGsvR~lt~~~G~p~~~vkErL~~~D~~~~~~sY  104 (183)
T 3rt2_A           29 STLVKHIKAPLHLVWSIVR-RFDE-PQKYKP-FISRC-VVQGKKLEVGSVREVDLKSGLPATKSTEVLEILDDNEHILGI  104 (183)
T ss_dssp             EEEEEEESSCHHHHHHHHT-CTTC-GGGTCT-TEEEE-EESSSCCCTTCEEEEEECCSSTTCEEEEEEEEEETTTTEEEE
T ss_pred             EEEEEEEeCCHHHHHHHHh-CcCc-hhhcCc-cceEE-EeeCCCCCCCcEEEEEeCCCCccceEEEEEEEEECCCCEEEE
Confidence            4455699999999999999 9999 799999 59999 5789 6899999999999886667999999999999999999


Q ss_pred             EEEecCCCCcceeEEEEEEEEEEcC-CC--ceEEEEEEEEEe
Q 032152           85 TVIEGDMLGTILESIVYDVKFEASG-NG--GSICKVASEFHT  123 (146)
Q Consensus        85 ~i~eg~~~~~~~~~y~~t~~v~p~~-~g--~s~v~w~~~y~~  123 (146)
                      ++++|++   ++++|+++++|.|.+ +|  +|.|+|+.+|++
T Consensus       105 ~Iieg~l---p~~~y~ati~v~p~~~dG~~gt~V~Ws~~fd~  143 (183)
T 3rt2_A          105 RIVGGDH---RLKNYSSTISLHSETIDGKTGTLAIESFVVDV  143 (183)
T ss_dssp             EEEEESC---SCTTCEEEEEEEEEEETTEEEEEEEEEEEEEC
T ss_pred             EEecCCc---ceeEEEEEEEEEEecCCCCCCEEEEEEEEEEc
Confidence            9999975   399999999999987 65  699999999997

>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana}

Probab=99.97  E-value=6.6e-30  Score=193.33  Aligned_cols=111  Identities=13%  Similarity=0.058  Sum_probs=97.5

Q ss_pred             EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC-CCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152            6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD-GGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY   84 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd-g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y   84 (146)
                      .....+|+|||++||++++ ||++ +|+|+| .|++|++++|+ +++|+||.|+|.+|++..+++|||+++|+++|+|+|
T Consensus        56 ~~v~~~I~ApadkVW~lv~-Df~~-l~~w~p-~V~s~e~~eGd~g~vGsVR~lt~~~G~p~~~vkErL~~lDde~~~~sY  132 (208)
T 3jrs_A           56 SLLAQRIHAPPETVWSVVR-RFDR-PQIYKH-FIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGF  132 (208)
T ss_dssp             EEEEEEESSCHHHHHHHHT-CTTC-GGGTCT-TEEEEECCTTCCCSTTCEEEEEECTTSSCCEEEEEEEEEETTTTEEEE
T ss_pred             EEEEEEEeCCHHHHHHHHh-CcCC-hhHccc-cceEEEEecCCCCCCCeEEEEEecCCCccceEEEEEEEEeccCCEEEE
Confidence            3445689999999999999 9999 799998 69999998897 699999999999997777999999999999999999


Q ss_pred             EEEecCCCCcceeEEEEEEEEEEcCC-CceEEEEEEEEE
Q 032152           85 TVIEGDMLGTILESIVYDVKFEASGN-GGSICKVASEFH  122 (146)
Q Consensus        85 ~i~eg~~~~~~~~~y~~t~~v~p~~~-g~s~v~w~~~y~  122 (146)
                      +|++|++   ++++|+++++|.|.++ ++|.++|+++|+
T Consensus       133 sIieG~l---pv~~Y~sti~V~p~~~g~~t~V~Wt~~fe  168 (208)
T 3jrs_A          133 SITGGEH---RLRNYKSVTTVHRFEKEEEEERIWTVVLE  168 (208)
T ss_dssp             EEEESSS---SCTTCEEEEEEEEEEC-----CEEEEEEE
T ss_pred             EEeeCCc---ceeeEEEEEEEEEccCCCccEEEEEEEEE
Confidence            9999985   3899999999999654 589999999999

>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana}

Probab=99.97  E-value=2.7e-29  Score=189.58  Aligned_cols=114  Identities=15%  Similarity=0.178  Sum_probs=104.5

Q ss_pred             cEEEEEEE--EecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCC
Q 032152            3 VMRFEKEV--SAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNF   80 (146)
Q Consensus         3 ~~~~~~e~--~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~   80 (146)
                      .++++.++  +|+|||++||++++ ||++ +++|+| .|++|++ +|++++|+||.|+|.+|.+..+++|||+++|+++|
T Consensus        49 ~~k~~~~V~~~I~ApadkVW~lV~-Df~~-l~kW~P-~V~s~ev-eGdg~vGsVR~vt~~~G~p~~~vkErL~~lDde~~  124 (205)
T 3oqu_A           49 ENQCTSALVKHIKAPLHLVWSLVR-RFDQ-PQKYKP-FVSRCTV-IGDPEIGSLREVNVKSGLPATTSTERLELLDDEEH  124 (205)
T ss_dssp             TTEEEEEEEEEESSCHHHHHHHHT-CTTC-GGGTCT-TEEEEEC-CSSCCTTCEEEEEECTTSSCSEEEEEEEEEETTTT
T ss_pred             CcEEEEEEeeEEcCCHHHHHHHHh-CcCC-hhHcCc-cceEEEe-eCCCCCCcEEEEEEcCCCccceEEEEEEEEECCCC
Confidence            47889999  99999999999999 9999 799999 6999985 89889999999999988767799999999999999


Q ss_pred             eeEEEEEecCCCCcceeEEEEEEEEEEcC-CC--ceEEEEEEEEEe
Q 032152           81 RCKYTVIEGDMLGTILESIVYDVKFEASG-NG--GSICKVASEFHT  123 (146)
Q Consensus        81 ~~~y~i~eg~~~~~~~~~y~~t~~v~p~~-~g--~s~v~w~~~y~~  123 (146)
                      +++|++++|++   +|++|+++++|.|.+ +|  +|.+.|+..+++
T Consensus       125 ~~sYsIieG~l---pv~~Y~ati~V~p~~~dG~~~T~v~ws~~~D~  167 (205)
T 3oqu_A          125 ILGIKIIGGDH---RLKNYSSILTVHPEIIEGRAGTMVIESFVVDV  167 (205)
T ss_dssp             EEEEEEEEESS---SCTTCEEEEEEEEECCCC-CEEEEEEEEEEEC
T ss_pred             EEEEEEEecCc---ceeEEEEEEEEEEccCCCCceEEEEEEEeccC
Confidence            99999999975   399999999999988 45  689999999987

>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*

Probab=99.97  E-value=5.9e-29  Score=186.08  Aligned_cols=111  Identities=15%  Similarity=0.192  Sum_probs=95.8

Q ss_pred             EEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEEEE
Q 032152            7 EKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKYTV   86 (146)
Q Consensus         7 ~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y~i   86 (146)
                      ....+|+|||++||++++ ||++ .+.|.| .|++|++++|+|++|+||.|+|.+|++..+++|||+.+|+++|+|+|++
T Consensus        38 ~~~~~I~Apa~~vW~lv~-df~~-~~~w~p-~I~s~e~~eGdg~vGsVR~~t~~~G~p~~~vkErL~~iD~~~~~~sY~i  114 (190)
T 3kl1_A           38 LITQRIHAPASVVWPLIR-RFDN-PERYKH-FVKRCRLISGDGDVGSVREVTVISGLPASTSTERLEFVDDDHRVLSFRV  114 (190)
T ss_dssp             EEEEEESSCHHHHHHHHH-CTTC-GGGTCS-SEEEEEEEESSSSTTCEEEEEECSSSSCEEEEEEEEEEETTTTEEEEEE
T ss_pred             EEEEEecCCHHHHHHHHh-CCCC-hhHccc-ccCEEEEEcCCCCCCeEEEEEecCCCccceEEEEEEEEeccCCEEEEEE
Confidence            344599999999999999 9998 545554 7999999999999999999999999877899999999999999999999


Q ss_pred             EecCCCCcceeEEEEEEEEEE-----cCCCceEEEEEEEEEe
Q 032152           87 IEGDMLGTILESIVYDVKFEA-----SGNGGSICKVASEFHT  123 (146)
Q Consensus        87 ~eg~~~~~~~~~y~~t~~v~p-----~~~g~s~v~w~~~y~~  123 (146)
                      ++|+++   +++|++++++.+     .++++|.|+|+++|++
T Consensus       115 ieG~~~---~~~Y~s~~~v~~~~~~~~~~~gt~V~Ws~~f~~  153 (190)
T 3kl1_A          115 VGGEHR---LKNYKSVTSVNEFLNQDSGKVYTVVLESYTVDI  153 (190)
T ss_dssp             EEESSS---CCSCEEEEEEEEEEC-CCCCEEEEEEEEEEEEC
T ss_pred             EecCCc---cccEEEEEEEEecccccCCCCcEEEEEEEEEEc
Confidence            999875   566666666665     4566899999999995

>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A

Probab=99.97  E-value=7.3e-29  Score=178.16  Aligned_cols=107  Identities=12%  Similarity=0.272  Sum_probs=98.1

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeE
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCK   83 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (146)
                      .+++.+++|+|||++||++++ ||++ +|+|+|. +++|++++|    |++|.+++.+|+   +++|||+.+|+++++++
T Consensus         2 ~~v~~si~I~Ap~~~VW~~l~-d~~~-~~~w~p~-v~~~~~~~G----G~vR~~~~~~G~---~~~Erl~~~D~~~~~~~   71 (146)
T 3f08_A            2 AHTTTSMEIFGSTEQVWQLIG-GFNS-LPDWLPY-IPSSKLTEG----GRVRHLANPDGE---TIIERLEVFNDKERYYT   71 (146)
T ss_dssp             CEEEEEEEESSCHHHHHHHHC-STTC-HHHHCTT-CCEEEEEGG----GTEEEEECTTSC---EEEEEEEEEETTTTEEE
T ss_pred             CEEEEEEEEeCCHHHHHHHHh-cccc-HHHhCCC-eEEEEEeCC----CeEEEEEeCCCC---EEEEEEEEEeCCCCEEE
Confidence            468999999999999999998 9999 7999995 899998865    899999998775   89999999999999999


Q ss_pred             EEEEecCCCCcceeEEEEEEEEEE-cCCCceEEEEEEEEEe
Q 032152           84 YTVIEGDMLGTILESIVYDVKFEA-SGNGGSICKVASEFHT  123 (146)
Q Consensus        84 y~i~eg~~~~~~~~~y~~t~~v~p-~~~g~s~v~w~~~y~~  123 (146)
                      |++++|++   ++++|.++++|.| .++|||.|+|+.+|+|
T Consensus        72 y~iv~g~~---~~~~~~~~~~v~p~~~~~gt~v~w~~~~~p  109 (146)
T 3f08_A           72 YSIMNAPF---PVTNYLSTIQVKEGTESNTSLVEWSGTFTP  109 (146)
T ss_dssp             EEEEECSS---SEEEEEEEEEEEECSSTTCEEEEEEEEEEE
T ss_pred             EEEecCCC---ceeEEEEEEEEEEecCCCcEEEEEEEEEEe
Confidence            99999964   3999999999999 5678899999999998

>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*

Probab=99.96  E-value=5.5e-29  Score=188.60  Aligned_cols=109  Identities=13%  Similarity=0.056  Sum_probs=99.6

Q ss_pred             EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC-CCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152            6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD-GGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY   84 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd-g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y   84 (146)
                      .....+|+|||++||++++ ||++ +++|+| .|++|++++|+ +++|+||.|+|.+|.+..+++|||+.+|+++|+|+|
T Consensus        52 ~~v~~~I~ApadkVW~lv~-dF~~-l~~w~p-~V~s~e~~eGd~g~vGsVR~lt~~~G~p~~~vkErL~~lDd~~~~~sY  128 (211)
T 3k3k_A           52 SLHAQRIHAPPELVWSIVR-RFDK-PQTYKH-FIKSCSVEQNFEMRVGCTRDVIVISGLPANTSTERLDILDDERRVTGF  128 (211)
T ss_dssp             EEEEEEESSCHHHHHHHHT-CTTC-GGGTCS-SEEEEECCTTCCCCTTCEEEEEESSSSSCEEEEEEEEEEETTTTEEEE
T ss_pred             EEEEEEEcCCHHHHHHHHh-CcCC-hhHcCc-cceEEEEecCCCCCCCcEEEEEecCCCccceEEEEEEEEeccCCEEEE
Confidence            3445689999999999999 9999 899999 69999998887 589999999999997778999999999999999999


Q ss_pred             EEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEE
Q 032152           85 TVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFH  122 (146)
Q Consensus        85 ~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~  122 (146)
                      +|++|++   ++++|+++++|.|.++|+  ++|+++|+
T Consensus       129 sIieg~l---pv~~Y~sti~V~p~~~gg--V~Wt~~fe  161 (211)
T 3k3k_A          129 SIIGGEH---RLTNYKSVTTVHRFEKEN--RIWTVVLE  161 (211)
T ss_dssp             EEEEETT---GGGTCEEEEEEEEEEETT--EEEEEEEE
T ss_pred             EEeecCc---ceeEEEEEEEEEECCCCC--EEEEEEEE
Confidence            9999985   499999999999998775  99999998

>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}

Probab=99.96  E-value=4.6e-28  Score=176.71  Aligned_cols=110  Identities=14%  Similarity=0.208  Sum_probs=97.8

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCC--CCCcEEEEEeecCCcceeeEEEEEEeeCCCCe
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDG--GAGSIKITNFADGGNFKYAKHRIDELDKDNFR   81 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg--~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~   81 (146)
                      .+++.+++|+|||++||++++ ||++ + +|+|.++++|++++|++  ++|++|.+    |+   +++|||+.+|+++++
T Consensus         2 ~~v~~si~I~Ap~~~VW~~v~-Df~~-~-~w~P~v~~s~e~~eg~~~~~vGsvR~~----gg---~v~Erl~~~D~~~~~   71 (160)
T 3p51_A            2 PKVYNSIVVDAPVERVWSRIR-NFHD-F-SWAPSLIKSCKKVGGGGGYSVGARRLL----NG---EFLDTLIAYSEIERR   71 (160)
T ss_dssp             CEEEEEEEESSCHHHHHHHHC-CTTC-C-TTCTTTCCCEEEESSCCTTCTTCEEEE----TT---TEEEEEEEEETTTTE
T ss_pred             CEEEEEEEECCCHHHHHHHHh-CcCC-C-eEccCceEEEEEEecCCCCCCCCEEEE----CC---EEEEEEEEEcCCCcE
Confidence            468999999999999999999 9999 7 99998777779998864  89999998    33   799999999999999


Q ss_pred             eEEEEEecCCCC--cceeEEEEEEEEEEcC-CCceEEEEEEEEEe
Q 032152           82 CKYTVIEGDMLG--TILESIVYDVKFEASG-NGGSICKVASEFHT  123 (146)
Q Consensus        82 ~~y~i~eg~~~~--~~~~~y~~t~~v~p~~-~g~s~v~w~~~y~~  123 (146)
                      ++|++++|+++.  +.+++|.++++|.|.+ +|+|.|+|+++|++
T Consensus        72 ~sY~ii~g~l~~~~~~~~~y~~~~~v~p~~~~ggt~V~w~~~~~~  116 (160)
T 3p51_A           72 IMYSMDEGPSPVSSGEIYNYVGNLHLLPVTIDDTTFVEWSGSWES  116 (160)
T ss_dssp             EEEEEEECSTTSSTTTEEEEEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred             EEEEEecCCCcccccceeEEEEEEEEEEecCCCCEEEEEEEEEEe
Confidence            999999997431  1299999999999987 67899999999999

>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A

Probab=99.96  E-value=1.9e-28  Score=171.55  Aligned_cols=109  Identities=13%  Similarity=0.197  Sum_probs=95.0

Q ss_pred             Ccc-EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCC
Q 032152            1 MGV-MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDN   79 (146)
Q Consensus         1 m~~-~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~   79 (146)
                      ||+ ++++.+++|++||+++|++++ +++ ++| |.+                 +       |.   .   |++++|+++
T Consensus         1 m~~~g~~~~e~~i~~~a~k~w~~~~-~~~-~~p-~g~-----------------~-------G~---~---~ie~iD~~~   47 (122)
T 1vjh_A            1 STLKGALSVKFDVKCPADKFFSAFV-EDT-NRP-FEK-----------------N-------GK---T---EIEAVDLVK   47 (122)
T ss_dssp             CCSEEEEEEEEEESSCHHHHHHHHH-HHT-TSC-SST-----------------T-------CE---E---EEEEEETTT
T ss_pred             CCCCcEEEEEEEecCCHHHHHHHHh-hcc-cCC-ccC-----------------C-------Cc---c---EEEEEeccc
Confidence            787 999999999999999999999 885 477 422                 1       21   1   999999999


Q ss_pred             CeeEEEEEecCCCCcceeEEEEEEEEEEcC-CCceEEEEEEEEEe-----------chhhhhHHHHHHHHHhhCCC
Q 032152           80 FRCKYTVIEGDMLGTILESIVYDVKFEASG-NGGSICKVASEFHT-----------KEKAMGLHKIVEAHLLANPD  143 (146)
Q Consensus        80 ~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~-~g~s~v~w~~~y~~-----------~~~~~~~~k~~e~~l~~~~~  143 (146)
                      ++++|+++||+++ ++|++|+++++|+|.+ +|||+|+|+++|++           ++++.+++|+||+||++|||
T Consensus        48 ~~~~y~iieGd~~-~~~~~~~~~~~v~~~~~~~gs~vkwt~~ye~~~~~~~~p~~~~~~~~~~~k~ie~yll~~p~  122 (122)
T 1vjh_A           48 KTMTIQMSGSEIQ-KYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSIIDESVKYFKKLDEAILNFKE  122 (122)
T ss_dssp             TEEEEEEECTTGG-GTEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCSHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CEEEEEEEEcccc-ccEEEEEEEEEEEEecCCCCeEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            9999999999977 4899999999999985 56899999999998           78999999999999999996

>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A*

Probab=99.95  E-value=5.5e-27  Score=174.62  Aligned_cols=112  Identities=15%  Similarity=0.105  Sum_probs=96.1

Q ss_pred             EEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEc-CCCC----CCcEEEEEeecCCcceeeEEEEEEeeCCCC
Q 032152            6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQ-GDGG----AGSIKITNFADGGNFKYAKHRIDELDKDNF   80 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~e-Gdg~----~Gsir~~~~~~g~~~~~~kErl~~~D~~~~   80 (146)
                      -....+|+|||++||++++ ||++ ++.|+| +|++|++.+ |+|+    +|+||.++|.+|.+..+++|||+.+|+++|
T Consensus        32 s~~~~~I~Ap~d~VWalVr-dF~~-p~~w~p-~V~s~~~~e~Gdg~~~~~vGsVR~ltl~~G~P~~~i~ErL~~lDde~~  108 (189)
T 3oji_A           32 SLIAHRVDAPAHAIWRFVR-DFAN-PNKYKH-FIKSCTIRVNGNGIKEIKVGTIREVSVVSGLPASTSVEILEVLDEEKR  108 (189)
T ss_dssp             EEEEEEESSCHHHHHHHHS-CTTC-GGGTCT-TEEEEEECCC----CCCSTTCEEEEEECSSSSBSEEEEEEEEEETTTT
T ss_pred             eeEEEEEcCCHHHHHHHHh-CCCC-hhhCcc-ccceEEEEecCCCCccCCCCcEEEEEecCCCcCceEEEEEEEEeccCC
Confidence            3456789999999999999 9999 788998 599999887 8865    999999999988777799999999999999


Q ss_pred             eeEEEEEecCCCCcceeEEEEEEEEEEcC---CC-----ceEEEEEEEEEe
Q 032152           81 RCKYTVIEGDMLGTILESIVYDVKFEASG---NG-----GSICKVASEFHT  123 (146)
Q Consensus        81 ~~~y~i~eg~~~~~~~~~y~~t~~v~p~~---~g-----~s~v~w~~~y~~  123 (146)
                      +++|+|++|+++   +++|+++++|.|.+   +|     +|.+.|+..+++
T Consensus       109 ~~sY~Iieg~~p---v~nY~StitV~~~~~~~~G~~~~~~T~v~es~~~D~  156 (189)
T 3oji_A          109 ILSFRVLGGEHR---LNNYRSVTSVNEFVVLEKDKKKRVYSVVLESYIVDI  156 (189)
T ss_dssp             EEEEEEEECSBS---SCSCEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEC
T ss_pred             EEEEEEEecCCc---cccEEEEEEEEeccccCCCccccCcEEEEEeEecCC
Confidence            999999999854   89999999999853   33     689999999986

>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}

Probab=99.94  E-value=1.8e-25  Score=159.72  Aligned_cols=110  Identities=11%  Similarity=0.127  Sum_probs=100.1

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC-CCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeE
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD-GGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCK   83 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd-g~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (146)
                      +++.+++|+|||++||+++. |+++ +|+|+|. ++++++++|+ +++|++|.+++..|+   .++|+|+.+|+++++++
T Consensus         3 ~v~~si~I~ap~e~Vw~~l~-d~~~-~~~w~p~-v~~~~~~~g~~~~~G~~r~~~~~~G~---~~~e~i~~~d~~~~~~~   76 (151)
T 2le1_A            3 TLRRSVEVAAPAADVWTLVG-DFSA-IHRWHPQ-VSAPTLRGASPHTPGAERVFGAGTEE---ELVERLVERDESARRLV   76 (151)
T ss_dssp             EEEEEEEESSCHHHHHHHHT-TSGG-GGGTCTT-CCCEEEESSCTTSTTCEEEESSSSSS---CEEEEEEEEETTTTEEE
T ss_pred             eEEEEEEecCCHHHHHHHHh-CcCc-HHHhcCC-ceEEEEECCCCCCCCeEEEEEeCCCC---EEEEEEEEEeCCCCEEE
Confidence            78999999999999999998 9999 7999997 8999998876 689999999987664   79999999999999999


Q ss_pred             EEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           84 YTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        84 y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      |++++|+.   ++++|.++++|+|.++++|.++|+.+|++
T Consensus        77 ~~~~~g~~---~~~~~~~~~~l~~~~~~gt~v~w~~~f~~  113 (151)
T 2le1_A           77 YTMPDPPF---PITNHRAVLEVVPRDDRHCTVVWTAMFDC  113 (151)
T ss_dssp             EEEEECSS---SEEEEEEEEEEEESSSSCEEEEEEEEEEE
T ss_pred             EEEecCCC---CceeEEEEEEEEECCCCcEEEEEEEEEEe
Confidence            99999863   39999999999997667899999999996

>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A

Probab=99.73  E-value=2.8e-16  Score=113.99  Aligned_cols=112  Identities=13%  Similarity=0.171  Sum_probs=86.6

Q ss_pred             CccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEE--eecCCcceeeEEEEEEeeCC
Q 032152            1 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITN--FADGGNFKYAKHRIDELDKD   78 (146)
Q Consensus         1 m~~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~--~~~g~~~~~~kErl~~~D~~   78 (146)
                      |+. +++.++.|++||++||+++. |+.+ +|.|+|. +.+++++++++..-.+| ++  ...+|....+..+ ..+|++
T Consensus         1 M~~-~v~~si~I~a~~~~V~~lV~-Dve~-yP~~~p~-~~~~~vl~~~~~~~~~r-l~~~~~~~G~~~~~ts~-~~~d~~   74 (159)
T 3tl1_A            1 MAG-HTDNEITIAAPMELVWNMTN-DIEK-WPGLFSE-YASVEVLGRDDDKVTFR-LTMHPDADGKVWSWVSE-RVADPV   74 (159)
T ss_dssp             CCS-EEEEEEEESSCHHHHHHHHT-CGGG-HHHHCSS-EEEEEEEEECSSEEEEE-EEECCCTTSCCCEEEEE-EEEETT
T ss_pred             CCC-eeEEEEEecCCHHHHHHHHH-hHHH-hhhhhhC-ceEEEEEecCCCEEEEE-EEEEeccCceEEEEEEE-EEEcCC
Confidence            543 68999999999999999999 9999 9999997 88889887664322333 33  3333332333333 258999


Q ss_pred             CCeeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           79 NFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        79 ~~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      ++++.|++++.+    |++++.++|+|+|.++ ||.|+|..+|+.
T Consensus        75 ~~~I~~~~~~~g----Pf~~l~g~W~f~p~~~-gt~V~~~~df~~  114 (159)
T 3tl1_A           75 TRTVRAQRVETG----PFQYMNIVWEYAETAE-GTVMRWTQDFAM  114 (159)
T ss_dssp             TTEEEEEESSCT----TEEEEEEEEEEEEETT-EEEEEEEEEEEE
T ss_pred             CCEEEEEEccCC----ChhhccCEEEEEECCC-CEEEEEEEEEEe
Confidence            999999987433    3899999999999877 699999999998

>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6

Probab=99.73  E-value=5.5e-16  Score=107.22  Aligned_cols=109  Identities=17%  Similarity=0.231  Sum_probs=85.5

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeE
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCK   83 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (146)
                      .+++.+++|+||+++||+++. |+.+ +|+|+|. +++++++++++ .|....+++..++....+..++. .+++++++.
T Consensus         2 ~~~~~~~~i~ap~~~V~~~l~-d~~~-~~~w~p~-~~~~~~~~~~~-~g~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~   76 (147)
T 2d4r_A            2 PEVRAERYIPAPPERVYRLAK-DLEG-LKPYLKE-VESLEVVAREG-ARTRSRWVAVAMGKKVRWLEEEE-WDDENLRNR   76 (147)
T ss_dssp             CEEEEEEEESSCHHHHHHHHH-CHHH-HGGGCTT-EEEEEEEEEET-TEEEEEEEEEETTEEEEEEEEEE-EETTTTEEE
T ss_pred             CeEEEEEEeCCCHHHHHHHHh-Chhh-hhhhccc-ccEEEEEEeCC-CccEEEEEEEeCCceEEEEEEEE-EcCCCcEEE
Confidence            478889999999999999999 9999 8999996 78888775432 25566666654442233455554 457788999


Q ss_pred             EEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           84 YTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        84 y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      |++++|+     ++.+.++++|+|.++| |.++|+.+|++
T Consensus        77 ~~~~~g~-----~~~~~~~~~~~~~~~g-T~v~~~~~~~~  110 (147)
T 2d4r_A           77 FFSPEGD-----FDRYEGTWVFLPEGEG-TRVVLTLTYEL  110 (147)
T ss_dssp             EEEEEES-----CSEEEEEEEEEECSSS-EEEEEEEEEEC
T ss_pred             EEeccCC-----hhheEEEEEEEECCCC-cEEEEEEEEec
Confidence            9998875     4577899999998776 99999999998

>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}

Probab=99.73  E-value=2.5e-16  Score=114.88  Aligned_cols=113  Identities=16%  Similarity=0.201  Sum_probs=89.8

Q ss_pred             cEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCee
Q 032152            3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         3 ~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (146)
                      |.+++.++.|++||++||+++. |+.+ +|+|+|. +.++++++++++ +..-.+....+|....+..++ .+|++.+++
T Consensus         4 M~~v~~si~I~ap~~~V~~~v~-D~~~-~p~~~P~-~~~~~v~~~~~~-~~~~~~~~~~~G~~~~~~s~~-~~~~~~~~i   78 (172)
T 3tfz_A            4 MRHVEHTVTVAAPADLVWEVLA-DVLG-YADIFPP-TEKVEILEEGQG-YQVVRLHVDVAGEINTWTSRR-DLDPARRVI   78 (172)
T ss_dssp             CEEEEEEEEESSCHHHHHHHHH-CGGG-HHHHCSS-EEEEEEEEEETT-EEEEEEEEEETTEEEEEEEEE-EEETTTTEE
T ss_pred             CcEEEEEEEeCCCHHHHHHHHH-hHHH-HHhhCcc-cceEEEEecCCC-EEEEEEEEecCCEEEEEEEEE-EEeCCCCEE
Confidence            6789999999999999999999 9999 9999996 889998866432 222234445444333344443 488989999


Q ss_pred             EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      .|++++++.   +++.+.++|+|.|.++++|.|+|+.+|+.
T Consensus        79 ~~~~~~~~g---pf~~~~g~w~f~~~~~~~t~V~~~~~~~~  116 (172)
T 3tfz_A           79 AYRQLETAP---IVGHMSGEWRAFTLDAERTQLVLTHDFVT  116 (172)
T ss_dssp             EEEEEECCT---TEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEeeCCC---ChhhcEEEEEEEECCCCcEEEEEEEEEEE
Confidence            999997642   48999999999998878999999999997

>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A

Probab=99.71  E-value=6.8e-16  Score=113.07  Aligned_cols=110  Identities=16%  Similarity=0.245  Sum_probs=85.1

Q ss_pred             ccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEE-EEE--eecCCcc-eeeEEEEEEeeC
Q 032152            2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIK-ITN--FADGGNF-KYAKHRIDELDK   77 (146)
Q Consensus         2 ~~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir-~~~--~~~g~~~-~~~kErl~~~D~   77 (146)
                      =+..++.++.|++||++||+++. |+.+ +|.|+|. +.+++++++++  +.+| .+.  ...+|.. .+..++  .+|+
T Consensus         1 Ma~~v~~si~I~a~~~~v~~lv~-Dv~~-~p~w~p~-~~~~~~~~~~~--~~~~~~l~~~~~~~G~~~~~ts~~--~~d~   73 (169)
T 3tvq_A            1 MAARTDNSIVVNAPFELVWDVTN-DIEA-WPELFSE-YAEAEILRQDG--DGFDFRLKTRPDANGRVWEWVSHR--VPDK   73 (169)
T ss_dssp             CCEEEEEEEEESSCHHHHHHHHT-CGGG-HHHHCTT-EEEEEEEEEET--TEEEEEEEECCCTTSCCCEEEEEE--EEEG
T ss_pred             CCCeEEEEEEecCCHHHHHHHHH-hhhH-HHHHHhh-eeEEEEEecCC--CEEEEEEEEEecCCCeEEEEEEEE--EEcC
Confidence            04578999999999999999999 9999 9999996 88889887653  2333 232  2233333 333444  4799


Q ss_pred             CCCeeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           78 DNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        78 ~~~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      +++++.|+.++++    |+++|.++|+|+|.++| |.|+|+.+|+.
T Consensus        74 ~~~~I~~~~l~~g----Pf~~~~g~W~f~p~~~g-t~V~~~~df~~  114 (169)
T 3tvq_A           74 GSRTVRAHRVETG----PFAYMNLHWTYRAVAGG-TEMRWVQEFDM  114 (169)
T ss_dssp             GGTEEEEEESSCT----TEEEEEEEEEEEEETTE-EEEEEEEEEEE
T ss_pred             CCcEEEEEEcCCC----ChhheeeEEEEEECCCC-EEEEEEEEEEe
Confidence            9999999976544    38999999999999876 99999999988

>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A

Probab=99.65  E-value=8.1e-15  Score=105.81  Aligned_cols=107  Identities=7%  Similarity=0.136  Sum_probs=88.4

Q ss_pred             cEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCee
Q 032152            3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         3 ~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (146)
                      +.+++.+++|+|||++||+++. |+.+ +|.|.|. +.++++ +|.-.+|+.+.++...+.   .+.++|+++|+.++ +
T Consensus        17 ~~~i~~si~I~Appe~VW~~lt-D~~~-~~~W~p~-v~~~~~-~G~~~~G~~~~~~~~~~~---~~~~~v~~~~p~~~-~   88 (155)
T 3ijt_A           17 SMKFSFELAVNTKKEDAWTYYS-QVNQ-WFVWEGD-LEQISL-EGEFTTGQKGKMKMEDMP---ELAFTLVEVRENQC-F   88 (155)
T ss_dssp             CEEEEEEEEESSCHHHHHHHHH-CGGG-GGGTSTT-EEEEEE-SSSSSTTCEEEEEETTSC---CEEEEECCCBTTTE-E
T ss_pred             cEEEEEEEEEcCCHHHHHHHHh-Cccc-ccccchh-hEeeec-cCCCCCCCEEEEEeCCCC---cEEEEEEEEeCCcE-E
Confidence            4789999999999999999999 9999 9999996 888874 676678998888876554   67889999987774 7


Q ss_pred             EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      .|+..-      +...|..+..++|.++|+|.|+|+.+|..
T Consensus        89 ~~~~~~------p~~~~~~~h~l~p~~~ggTrvt~~~~~~G  123 (155)
T 3ijt_A           89 SDLTAT------PFGNVLFEHEILENPDGTISLRHSVSLTD  123 (155)
T ss_dssp             EEEEEE------TTEEEEEEEEEEECTTSCEEEEEEEEESC
T ss_pred             EEEEec------CCeEEEEEEEEEEcCCCcEEEEEEEEEEC
Confidence            776421      24467888899998778999999999965

>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6

Probab=99.62  E-value=5.5e-15  Score=104.68  Aligned_cols=110  Identities=17%  Similarity=0.212  Sum_probs=86.6

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC--C-CCCcEEEEEeecCCcceeeEEEEEEeeCCCC
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD--G-GAGSIKITNFADGGNFKYAKHRIDELDKDNF   80 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd--g-~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~   80 (146)
                      .+++.++.|++||++||+++. |+.+ +|+|+|. ++++++++.+  + +.+....+...-++-...+..|+. +|+.++
T Consensus         2 ~~~~~s~~i~ap~~~v~~~v~-D~~~-~p~~~p~-~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~   77 (148)
T 1t17_A            2 HRHVVTKVLPYTPDQLFELVG-DVDA-YPKFVPW-ITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFATRVR-RDKDAR   77 (148)
T ss_dssp             CEEEEEEEESSCTHHHHHHHT-TTTC-CSSCCSS-CCCCCEEEEEEETTEEEEEEEEECSTTSSCCEEEEEEE-EETTTC
T ss_pred             CEEEEEEEecCCHHHHHHHHH-HHhh-HHhhCCC-cCeeEEEEecCCCCCceEEEEEEEEecceeEEEEEEEE-EcCCCc
Confidence            478889999999999999999 9999 9999997 7777877532  2 134455566554433345566765 688877


Q ss_pred             eeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           81 RCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        81 ~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      ++.++.++|+     ++.+.++|+|.|.++| |.|+++++|++
T Consensus        78 ~i~~~~~~G~-----f~~~~g~w~f~~~~~g-t~v~~~~~~~~  114 (148)
T 1t17_A           78 SIDVSLLYGP-----FKRLNNGWRFMPEGDA-TRVEFVIEFAF  114 (148)
T ss_dssp             EEEEEESSTT-----SSCEEEEEEEEEETTE-EEEEEEEEECC
T ss_pred             EEEEEECCCC-----hhccEEEEEEEECCCC-eEEEEEEEEEE
Confidence            9999998874     6788999999998776 99999999997

>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A

Probab=99.58  E-value=1.1e-13  Score=99.03  Aligned_cols=109  Identities=16%  Similarity=0.220  Sum_probs=81.3

Q ss_pred             CccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecC-C-cceeeEEEEEEeeCC
Q 032152            1 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADG-G-NFKYAKHRIDELDKD   78 (146)
Q Consensus         1 m~~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g-~-~~~~~kErl~~~D~~   78 (146)
                      |+..+++.++.|++|+++||+++. |+.+ +|+|+|. +.+++.+++.    . -.|..... | ....+.-+++.. ++
T Consensus         1 ~~~~~v~~s~~I~ap~e~V~~~~~-D~e~-~p~w~p~-~~~v~~~~~~----~-~~~~~~~~~G~~~~~~~~~v~e~-~p   71 (155)
T 3ggn_A            1 MGETVVRDAVTIGKPAEQLYAVWR-DLPG-LPLLMTH-LRSVEVLDDK----R-SRWTVEAPAPLGTVSWEAELTAD-EP   71 (155)
T ss_dssp             ---CEEEEEEEESSCHHHHHHHHH-CGGG-HHHHSTT-CCEEEECSSS----E-EEEEEECCTTTCEEEEEEEEEEE-ET
T ss_pred             CCccEEEEEEEEcCCHHHHHHHHh-CHHH-hHHHhhh-ceEEEEecCC----e-eEEEEEecCCcceEEEEEEEEEe-cC
Confidence            889999999999999999999999 9999 9999997 8888876442    2 23334322 3 333456666654 45


Q ss_pred             CCeeEEEEEecCCCCcceeEEEEEEEEEEc-CCCceEEEEEEEEEe
Q 032152           79 NFRCKYTVIEGDMLGTILESIVYDVKFEAS-GNGGSICKVASEFHT  123 (146)
Q Consensus        79 ~~~~~y~i~eg~~~~~~~~~y~~t~~v~p~-~~g~s~v~w~~~y~~  123 (146)
                      ++++.|+.++|+.     ..+.+++.|.|. ++++|.|+++++|++
T Consensus        72 ~~~i~~~~~~g~~-----~~~~g~~~F~~~~~~~gT~V~~~~~~~~  112 (155)
T 3ggn_A           72 GKRIAWRSLPGAR-----IENSGEVLFRPAPGARGTEVVVRLTYRP  112 (155)
T ss_dssp             TTEEEEEECTTCS-----SCEEEEEEEEECSSSSCEEEEEEEEEC-
T ss_pred             CCEEEEEECCCCC-----cceEEEEEEEECCCCCceEEEEEEEEEC
Confidence            6688999988853     357889999998 466899999999998

>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10

Probab=99.54  E-value=8.5e-13  Score=94.29  Aligned_cols=113  Identities=8%  Similarity=-0.020  Sum_probs=76.7

Q ss_pred             CccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceee--EEEEEEeeCC
Q 032152            1 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYA--KHRIDELDKD   78 (146)
Q Consensus         1 m~~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~--kErl~~~D~~   78 (146)
                      |++ +++.++.|++|+++||+++. |+.+ +|+|+|+ +.+++.+.|++   ....++...|+....+  +-++..+|+.
T Consensus         1 M~m-~i~~~~~i~ap~e~Vw~~l~-D~e~-~~~w~p~-~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~   73 (162)
T 2pcs_A            1 MSL-NGNGSIELKGTVEEVWSKLM-DPSI-LSKCIMG-CKSLELIGEDK---YKADLQIGIAAVKGKYDAIIEVTDIKPP   73 (162)
T ss_dssp             --C-EEEEEEEEESCHHHHHHHHT-CHHH-HHHHSTT-EEEEEEEETTE---EEEEEEECCGGGCEEEEEEEEEEEEETT
T ss_pred             CeE-EEeeEEEecCCHHHHHHHhc-CHHH-HHhhCCC-ceEeEEeCCCe---EEEEEEEEeeeEEEEEEEEEEEEecCCC
Confidence            554 48899999999999999999 9999 9999997 77888764421   2222333333211223  3355666665


Q ss_pred             CCeeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           79 NFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        79 ~~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      . ++.++....+..  +...+.++++|+|.++|+|.++|+.+|+.
T Consensus        74 ~-~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~gT~v~~~~~~~~  115 (162)
T 2pcs_A           74 Y-HYKLLVNGEGGP--GFVNAEGVIDLTPINDECTQLTYTYSAEV  115 (162)
T ss_dssp             T-EEEEEEEEEETT--EEEEEEEEEEEEESSSSEEEEEEEEEEEE
T ss_pred             c-EEEEEEEecCCC--ccEEEEEEEEEEecCCCcEEEEEEEEEEE
Confidence            4 666665422111  25567999999996567899999999988

>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}

Probab=99.49  E-value=7.1e-13  Score=95.64  Aligned_cols=107  Identities=11%  Similarity=0.158  Sum_probs=79.4

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEe---ecCCc--ceeeEEEEEEeeCC
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNF---ADGGN--FKYAKHRIDELDKD   78 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~---~~g~~--~~~~kErl~~~D~~   78 (146)
                      .+++.++.|++||++||+++. |+.+ +|.+.|+++. .+-. ++   |. ..|..   ..|+.  ......|. .+|++
T Consensus         7 i~v~~s~~I~ap~e~v~~lv~-Dve~-w~~~yp~~~p-~~~~-~~---~~-~~~~~a~l~vg~~~~~~~~~s~~-~~~~~   77 (161)
T 3p9v_A            7 IELNRDLEIPASYDEVFDLLA-DVPK-SASHFPKVDK-LVDL-GN---NA-YRWEMEKVGVDKHAIQSVYACTY-HADKE   77 (161)
T ss_dssp             EEEEEEEEESSCHHHHHHHHT-CHHH-HHTTSTTEEE-EEEE-ET---TE-EEEEECCBSSGGGCBCCEEEEEE-EEETT
T ss_pred             EEEEEEEEEcCCHHHHHHHHh-Chhh-hHhhCCCeEE-EEEc-CC---Cc-eEEEEEEEeeeeEEEEEEEEEEE-EEcCC
Confidence            678999999999999999999 9999 8899997443 3312 33   22 22333   23322  12344443 37787


Q ss_pred             CCeeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           79 NFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        79 ~~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      ++++.+++++|+.    .++..++++|+|.++|+|.|+|+++|+.
T Consensus        78 ~~~I~~~~~~g~~----~~~l~g~w~f~p~~~g~t~V~~~~~~e~  118 (161)
T 3p9v_A           78 AGKITWSPIKGEG----NGVVSGSWTLSAKGDNATAVKFQTSAEL  118 (161)
T ss_dssp             TTEEEEEECTTST----TEEEEEEEEEEESSSSCEEEEEEEEEEE
T ss_pred             CCEEEEEEecCcc----ceeEEEEEEEEECCCCeEEEEEEEEEEE
Confidence            8899999988763    3788999999999888899999999998

>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10

Probab=99.47  E-value=7.7e-12  Score=88.34  Aligned_cols=108  Identities=19%  Similarity=0.247  Sum_probs=73.8

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEE--EEEEeeCCCCee
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKH--RIDELDKDNFRC   82 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kE--rl~~~D~~~~~~   82 (146)
                      +++.++.|++|+++||+++. |+.+ +|+|+|+ +++++ +.|+   +....++...|.......-  ++..+|+. +++
T Consensus        14 ~i~~~~~i~ap~e~Vw~~l~-D~~~-~~~w~p~-~~~~~-~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~i   85 (157)
T 2ns9_A           14 RYEGSFEVSKTPEEVFEFLT-DPKR-FSRAFPG-FKSVE-VEDG---SFTIELRLSLGPLRGDARVRASFEDLEKP-SKA   85 (157)
T ss_dssp             EEEEEEEESSCHHHHHHHHT-CHHH-HGGGSTT-EEEEE-EETT---EEEEEEEEESSSSEEEEEEEEEEEEEETT-TEE
T ss_pred             EEeeEEEEcCCHHHHHHHHc-CHHH-HHhhCCC-ceEEE-ECCC---EEEEEEEEEEcceeEEEEEEEEEEecCCC-cEE
Confidence            79999999999999999999 9999 8999997 67777 5443   1222233333321122333  44466654 577


Q ss_pred             EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      .|+....+.. .+++ +..+++++|.+ |+|.++|+.+|+.
T Consensus        86 ~~~~~~~~~~-~~~~-~~~~~~l~~~~-~gT~v~~~~~~~~  123 (157)
T 2ns9_A           86 TVKGSGRGAG-STLD-FTLRFAVEPSG-GGSRVSWVFEGNV  123 (157)
T ss_dssp             EEEEEEECSS-EEEE-EEEEEEEEEET-TEEEEEEEEEEEE
T ss_pred             EEEEEecCCC-ccEE-EEEEEEEEeCC-CcEEEEEEEEEEE
Confidence            7764322211 1244 78999999986 6899999999987

>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5

Probab=99.19  E-value=1.8e-09  Score=75.13  Aligned_cols=131  Identities=18%  Similarity=0.129  Sum_probs=88.3

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEee--cCCcceeeEEEEEEeeCCCCe
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA--DGGNFKYAKHRIDELDKDNFR   81 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~--~g~~~~~~kErl~~~D~~~~~   81 (146)
                      .+++.++.|+||+++||+++. |... +++|.++.--.+...+++..+|..-.+.+.  .++......-++.++++. ++
T Consensus         3 ~~~~~~~~i~ap~e~Vw~alt-d~~~-~~~W~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~g~~~~~~~~v~~~~p~-~~   79 (147)
T 1z94_A            3 NTIRLHRVLSAPPERVYRAFL-DPLA-LAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQKHAFGGRYLELVPG-ER   79 (147)
T ss_dssp             CCEEEEEEESSCHHHHHHHTT-CHHH-HHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCCEEEEEEEEEEEETT-TE
T ss_pred             cEEEEEEEeCCCHHHHHHHhC-CHHH-HhhccCCCCEeeeEEEEccCCCcEEEEEEEECCCCCEEEEEEEEEEEcCC-CE
Confidence            467788899999999999999 9998 899987531122233455456666656554  233334567788888765 57


Q ss_pred             eEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe--------chhhhhHHHHHHHHHhh
Q 032152           82 CKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT--------KEKAMGLHKIVEAHLLA  140 (146)
Q Consensus        82 ~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~--------~~~~~~~~k~~e~~l~~  140 (146)
                      +.|+...++...  -.....++.++|.+ ++|.++++.++.+        ...+...+..|.++|-+
T Consensus        80 l~~~~~~~~~~~--~~~~~~~~~l~~~~-~gT~l~~~~~~~~~~~~~~~~~~gw~~~L~~L~~~le~  143 (147)
T 1z94_A           80 IRYTDRFDDAGL--PGDMITTITLAPLS-CGADLSIVQEGIPDAIPPENCYLGWQQSLKQLAALVEP  143 (147)
T ss_dssp             EEEEEEESCCC-----CEEEEEEEEEET-TEEEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHSC
T ss_pred             EEEEEEEeCCCC--CCcEEEEEEEEecC-CCEEEEEEEEcCCchhhHHHHHHHHHHHHHHHHHHHHh
Confidence            888876543211  12457889999986 4799999999865        33455666677776643

>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5

Probab=99.12  E-value=6.6e-09  Score=75.52  Aligned_cols=132  Identities=14%  Similarity=-0.001  Sum_probs=85.9

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEee-cCCcceeeEEEEEEeeCCCCee
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA-DGGNFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~~~~   82 (146)
                      .+++.++.|+||+++||+++. |... +++|++..--.+...+++..+|..-.+.+. ++|......-++.++++.+ ++
T Consensus        22 ~~i~~~r~i~Ap~e~Vw~alt-dpe~-~~~W~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~~v~e~~p~~-rl   98 (178)
T 1xuv_A           22 QEIIITREFDAPRELVFKAFT-DPDL-YTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNEYAFHGVNHDVTEPE-RI   98 (178)
T ss_dssp             SEEEEEEEESSCHHHHHHHHH-CHHH-HTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEEETTT-EE
T ss_pred             cEEEEEEEECCCHHHHHHHhC-CHHH-HHhCCCCCCccceEEEEecccCCEEEEEEECCCCCEEEEEEEEEEEeCCC-EE
Confidence            468889999999999999999 9998 889975321122333455445555545544 3443234667888887755 67


Q ss_pred             EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe---c---------hhhhhHHHHHHHHHh
Q 032152           83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT---K---------EKAMGLHKIVEAHLL  139 (146)
Q Consensus        83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~---~---------~~~~~~~k~~e~~l~  139 (146)
                      .|+...++.. ..-.....++.|+|.++|+|.++++.+|.+   .         +.+..++..|.++|-
T Consensus        99 ~~~~~~~~~~-~~~~~~~v~~~l~~~~~ggT~lt~~~~~~~~~~~~~~~~~~~~~Gw~~~L~~Lk~~le  166 (178)
T 1xuv_A           99 ISTFEFEGLP-EKGHVILDTARFEALPGDRTKLTSHSVFQTIEDRDGMLQSGMEEGINDSYERLDELLE  166 (178)
T ss_dssp             EEEEEETTSS-SSCCCEEEEEEEEEETTTEEEEEEEEECSSHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCC-CCCCcEEEEEEEEEcCCCCEEEEEEEEeCCHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            7776543311 001246788999998767899999999865   1         234455566666653

>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}

Probab=99.11  E-value=8.8e-09  Score=71.24  Aligned_cols=127  Identities=10%  Similarity=0.030  Sum_probs=84.0

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeE
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCK   83 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (146)
                      .+++.++.|+||+++||+++. |+.. +++|.++..  +   +++-.+|....+....++..-.+..++.++++. +++.
T Consensus         5 ~~i~~~~~i~ap~e~Vw~~lt-d~~~-~~~W~~~~~--~---~~~~~~G~~~~~~~~~~g~~~~~~~~v~~~~p~-~~l~   76 (146)
T 2leq_A            5 LIAQVKTVINAPIEKVWEALV-NPEI-IKEYMFGTT--V---VSDWKEGSQIVWKGEWKGKAYEDKGTILQFNER-SILQ   76 (146)
T ss_dssp             EEEEEEEEECSCHHHHHHHHS-CTTH-HHHHSSSCE--E---ECCCSTTCEEEEEEEETTEEEEEEEEEEEEETT-TEEE
T ss_pred             ceEEEEEEECCCHHHHHHHHc-CHHH-hceeEcCCc--c---eeccCCCCEEEEEecCCCceecccEEEEEEcCC-CEEE
Confidence            689999999999999999999 9999 899963222  1   344345555556665554323567788888874 5777


Q ss_pred             EEEEec-CCCC-cceeEEEEEEEEEEcCCCceEEEEEEEEEe--------chhhhhHHHHHHHHHh
Q 032152           84 YTVIEG-DMLG-TILESIVYDVKFEASGNGGSICKVASEFHT--------KEKAMGLHKIVEAHLL  139 (146)
Q Consensus        84 y~i~eg-~~~~-~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~--------~~~~~~~~k~~e~~l~  139 (146)
                      |+.... +.++ .+-.....++.++|.++ +|.++|+.+..+        ...+...+..|.++|-
T Consensus        77 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~-gT~l~~~~~~~~~~~~~~~~~~gw~~~l~~Lk~~le  141 (146)
T 2leq_A           77 YSHFSPLTGKPDLPENYHVVTITLTALKK-GVEVELTQDNNETEKEQKHSEDNWNTMLEGLKKFLE  141 (146)
T ss_dssp             EECBCGGGCCCSCGGGSCEEEEEEEECSS-CEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             EEEccCccCCCCCCCCceEEEEEEEEcCC-CeEEEEEEecCCchhhHhhHHhhHHHHHHHHHHHHh
Confidence            876432 0000 01224678899999854 699999987554        2334555666666654

>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5

Probab=99.04  E-value=1.6e-08  Score=72.64  Aligned_cols=111  Identities=15%  Similarity=0.113  Sum_probs=74.9

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEee-cCCcceeeEEEEEEeeCCCCee
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA-DGGNFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~~~~   82 (146)
                      .+++.++.|+||+++||+++. |... +++|.+..--.+...+++..+|..-.+.+. ++|..-...-++.++++. +++
T Consensus        14 ~~i~~~~~i~ap~e~Vw~alt-dp~~-~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~~v~e~~p~-~rl   90 (171)
T 2il5_A           14 VEVEIEKLYKFSPELVYEAWT-KKDL-LKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKVNVIEGIYESLVMD-EYV   90 (171)
T ss_dssp             EEEEEEEEESSCHHHHHHHTT-CHHH-HTTTSSSCTTTEEEEEECCSTTCEEEEEEECGGGCEEEEEEEEEEEETT-TEE
T ss_pred             ceEEEEEEeCCCHHHHHHHHC-CHHH-HHhccCCCCccceEEEecccCCCEEEEEEECCCCCEEEEEEEEEEEcCC-CEE
Confidence            578999999999999999999 9998 788885321122333455445655545544 233222456678888764 477


Q ss_pred             EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEE
Q 032152           83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE  120 (146)
Q Consensus        83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~  120 (146)
                      .|+...++..   -.....++.++|.++|+|.++++.+
T Consensus        91 ~~~~~~~~~~---~~~~~~~~~l~~~~~g~T~l~~~~~  125 (171)
T 2il5_A           91 KMTIGMPGLS---ETQDVIEVEFFERETGGTQMLFYYR  125 (171)
T ss_dssp             EEEESCC--C---CCCEEEEEEEEECSSSSEEEEEEEE
T ss_pred             EEEEEecCCC---CCcEEEEEEEEECCCCCEEEEEEEE
Confidence            7887443321   1246788999998776899999986

>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}

Probab=99.03  E-value=2.7e-08  Score=69.46  Aligned_cols=124  Identities=11%  Similarity=0.101  Sum_probs=85.0

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccc-cccceeeEEEEcCCCCCCcEEEEEeec-CCc-ceeeEEEEEEeeCCCCe
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKL-VPQAIKSVEILQGDGGAGSIKITNFAD-GGN-FKYAKHRIDELDKDNFR   81 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~-~P~~v~s~~~~eGdg~~Gsir~~~~~~-g~~-~~~~kErl~~~D~~~~~   81 (146)
                      +++.++.|+||+++||+++. |... +++| .+..--.+...+++..+|..-.+.+.. +|. .....-++.++++.+ +
T Consensus         2 ~i~~~~~i~ap~e~Vw~alt-d~~~-~~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~~~~v~~~~p~~-~   78 (142)
T 2lcg_A            2 NITVETTVAAPVGKVWRAYT-TPED-IKQWNAASDDWHTTAATVDLREGGAFSSRMEAKDGSMGFDFAGTYTKVVENK-R   78 (142)
T ss_dssp             EEEEEEEESSCHHHHHHHTT-CHHH-HHHHCCSSTTEEEEEEEECCSTTCEEEEEEEETTSSCEEEEEEEEEEEETTT-E
T ss_pred             eEEEEEEeCCCHHHHHHHhC-CHHH-HhcCCCCCCCccceeeEEccccCCEEEEEEEcCCCCceeeeEEEEEEEcCCC-E
Confidence            57889999999999999999 9998 8899 653211222334555566666555543 232 234677888888755 7


Q ss_pred             eEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe-------chhhhhHHHHHHHHHhhCC
Q 032152           82 CKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT-------KEKAMGLHKIVEAHLLANP  142 (146)
Q Consensus        82 ~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------~~~~~~~~k~~e~~l~~~~  142 (146)
                      +.|+. .      .   ...++.++|.+ ++|.++++.++..       .+.+...+..|.++|-...
T Consensus        79 l~~~~-~------g---~~~~~~l~~~~-~gT~l~~~~~~~~~~~~~~~~~Gw~~~L~~L~~~le~~~  135 (142)
T 2lcg_A           79 IEYAF-G------D---RTAKVEFLEAP-QGVTVRVSFVAETEYPVEQQQQGWQAILNNFKRHVESHL  135 (142)
T ss_dssp             EEEEE-T------T---EEEEEEEEEET-TEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             EEEEc-C------C---CEEEEEEEEcC-CCEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77886 1      1   56789999986 4799999988744       3445566777777765543

>2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens}

Probab=99.00  E-value=7.4e-08  Score=69.27  Aligned_cols=134  Identities=11%  Similarity=0.068  Sum_probs=86.2

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccc-eeeEEEEcCCCCCCcEEEEEee-cCCcceeeEEEEEEeeCCCCe
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQA-IKSVEILQGDGGAGSIKITNFA-DGGNFKYAKHRIDELDKDNFR   81 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~-v~s~~~~eGdg~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~~~   81 (146)
                      .+++.++.|+||+++||+++. |... +++|++.. +. +...+++..+|..-.+.+. ++|......-++.++++.+ +
T Consensus        12 ~~i~~~~~i~Ap~e~Vw~alt-dp~~-~~~W~~p~~~~-~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~~~v~e~~p~~-r   87 (172)
T 2ldk_A           12 LSFSIVAEFDADVKRVWAIWE-DPRQ-LERWWGPPTWP-ATFETHEFTVGGKAAYYMTGPDGTKARGWWQFTTIEAPD-H   87 (172)
T ss_dssp             TEEEEEEEESSCHHHHHHHHH-CHHH-HHTTSSCTTSC-EEEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEECSSS-E
T ss_pred             ceEEEEEEeCCCHHHHHHHhC-CHHH-HHhccCCCCcc-cceEEEeecCCCEEEEEEECCCCCEEeeEEEEEEEcCCC-E
Confidence            468899999999999999999 9998 78886532 22 2223455455655445443 2343234667888887654 6


Q ss_pred             eEEEEEecCC--CC-cceeEEEEEEEEEEcCCCceEEEEEEEEEe---c---------hhhhhHHHHHHHHHhhCC
Q 032152           82 CKYTVIEGDM--LG-TILESIVYDVKFEASGNGGSICKVASEFHT---K---------EKAMGLHKIVEAHLLANP  142 (146)
Q Consensus        82 ~~y~i~eg~~--~~-~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~---~---------~~~~~~~k~~e~~l~~~~  142 (146)
                      +.|+....+.  .+ ........++.++|.+ |+|.++++..|.+   .         +.+..++..|.++|-+..
T Consensus        88 l~~~~~~~~~~g~p~~~~~~~~v~~~l~~~~-~gT~lt~~~~~~~~~~~~~~~~~~~~~Gw~~~L~~L~~~le~~~  162 (172)
T 2ldk_A           88 LEFDDGFADEHGAPVDELGVTHATVKLEPLE-NRTRMTIISTFESEEQMQKMAEMGMEEGMREAIEQIDAVLSEPA  162 (172)
T ss_dssp             EEEEEEEBCSSCCBCTTTCEEEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCS
T ss_pred             EEEEEeecCCCCCccCCCccEEEEEEEEEcC-CCEEEEEEEEcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhH
Confidence            7777643321  11 0023567889999986 5799999999866   1         223456666777765543

>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5

Probab=98.96  E-value=2.8e-09  Score=74.48  Aligned_cols=96  Identities=7%  Similarity=0.007  Sum_probs=71.3

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeE
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCK   83 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (146)
                      .+++.++.|+||+++||+++. |+.. +++|.|. +      +++..+|....+.+ +++.   +.-++.++++. +++.
T Consensus         8 ~~i~~~~~i~ap~e~Vw~~lt-d~~~-~~~W~~~-~------~~~~~~G~~~~~~~-~~g~---~~~~v~e~~p~-~~l~   73 (143)
T 1xn6_A            8 NDIKQTIVFNASIQKVWSVVS-TAEG-IASWFMP-N------DFVLEVGHEFHVQS-PFGP---SPCKVLEIDEP-NHLS   73 (143)
T ss_dssp             CCEEEEEEESSCHHHHHHTTS-CSHH-HHTTSCC-B------CCCCCTTCEECBCC-TTCC---CCEEEEEEETT-TEEE
T ss_pred             CEEEEEEEEcCCHHHHHHHHh-CHhH-HHHhcCC-C------CcCcCCCCEEEEEE-cCCC---ceEEEEEEeCC-CEEE
Confidence            468899999999999999999 9999 8999986 2      24434555554544 3342   56688888885 5777


Q ss_pred             EEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEE
Q 032152           84 YTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF  121 (146)
Q Consensus        84 y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y  121 (146)
                      |+...+        ....++.++|.++|+|.++++.+.
T Consensus        74 ~~~~~~--------~~~~~~~l~~~~~g~T~l~~~~~~  103 (143)
T 1xn6_A           74 FSWDTD--------GWVVSFDLKDLGDNKTEFTLIHGG  103 (143)
T ss_dssp             EEETTT--------TEEEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEeCC--------CEEEEEEEEECCCCcEEEEEEEEc
Confidence            876332        346789999987768999998874

>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5

Probab=98.95  E-value=2.3e-08  Score=70.69  Aligned_cols=132  Identities=13%  Similarity=-0.023  Sum_probs=81.4

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEE--EEcCCCCCCcEEEEEee-cCCcceeeEEEEEEeeCCCC
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVE--ILQGDGGAGSIKITNFA-DGGNFKYAKHRIDELDKDNF   80 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~--~~eGdg~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~~   80 (146)
                      .+++.++.|+||+++||+++. |... +++|.+..--.+.  ..+.+..+|..-.+.+. ++|..-...-++.++++.+ 
T Consensus         2 ~~i~~~r~i~Ap~e~Vw~alt-dp~~-~~~W~~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~-   78 (152)
T 3eli_A            2 ADLRLEREFAVAPEALFAWVS-DGAK-LLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQRYKVSGQVTHVKPPQ-   78 (152)
T ss_dssp             CEEEEEEEESSCHHHHHHHTT-CHHH-HHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCCEEEEEEEEEEEETTT-
T ss_pred             ceEEEEEEECCCHHHHHHHHc-CHHH-HhhccCCCCcccccceeEEcccCCcEEEEEEECCCCCEEEEEEEEEEEcCCC-
Confidence            367778899999999999998 9998 7888763211111  12345455555545543 2343234667788887754 


Q ss_pred             eeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEE-EEe-------chhhhhHHHHHHHHHh
Q 032152           81 RCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE-FHT-------KEKAMGLHKIVEAHLL  139 (146)
Q Consensus        81 ~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~-y~~-------~~~~~~~~k~~e~~l~  139 (146)
                      ++.|+....+....+-.....++.++|.++ +|.++++.. |..       .+....++..|++||-
T Consensus        79 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~~-gT~l~l~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~  144 (152)
T 3eli_A           79 SVGFTWGWHDDDDRRGAESHVMFIVEPCAK-GARLILDHRELGDDEMSLRHEEGWTSSLRKLAAELA  144 (152)
T ss_dssp             EEEEEEEEECTTSCEEEEEEEEEECCBC---CEEEEEEEESCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeecCCCCCCCCcEEEEEEEEECCC-CEEEEEEEccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666775432221111235567888888765 599888654 443       4455667777777764

>3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti}

Probab=98.95  E-value=6e-08  Score=69.34  Aligned_cols=131  Identities=18%  Similarity=0.243  Sum_probs=83.3

Q ss_pred             cEEEEEEEEecCCHHHHHHHhhhccccccccccccc--eeeEEEEcCCCCCCcEEEEEee-cCCcceeeEEEEEEeeCCC
Q 032152            3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQA--IKSVEILQGDGGAGSIKITNFA-DGGNFKYAKHRIDELDKDN   79 (146)
Q Consensus         3 ~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~--v~s~~~~eGdg~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~   79 (146)
                      -.++..++.|+||+++||+++. |... +++|.+..  ++ +...+++-.+|..-.+.+. ++|..-.+.-++.++++.+
T Consensus         7 ~~~i~~~r~i~Ap~e~Vw~alt-dp~~-~~~W~~~~~~~~-~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~   83 (161)
T 3rd6_A            7 HSTFTIERTYPQSPDRVFHAFA-DKAT-VRRWRVDGDGFT-VAEFSFDFRVGGGEVSRFSYGGGPEVRLDAQFQDIVPDQ   83 (161)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHH-CHHH-HHHHTCCCCC----CEEEECCSTTCEEEEEECSTTSCCEEEEEEEEEEETTT
T ss_pred             CceEEEEEEECCCHHHHHHHhc-CHHH-HhhccCCCCCce-eeEEEEccCcCCEEEEEEECCCCCEEEEEEEEEEEcCCC
Confidence            4678899999999999999999 9998 88998532  21 1222345445555445543 2333234666788887755


Q ss_pred             CeeEEEEEec-CCCCcceeEEEEEEEEEEcCCCceEEEEEEEEE-e---------chhhhhHHHHHHHHHhh
Q 032152           80 FRCKYTVIEG-DMLGTILESIVYDVKFEASGNGGSICKVASEFH-T---------KEKAMGLHKIVEAHLLA  140 (146)
Q Consensus        80 ~~~~y~i~eg-~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~-~---------~~~~~~~~k~~e~~l~~  140 (146)
                       ++.|+..-. +-.  +......++.++|.++ +|.++++.+.- +         .+.+..++..|++||-.
T Consensus        84 -rl~~~~~~~~~~~--~~~~s~v~~~l~~~~~-gT~lt~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~le~  151 (161)
T 3rd6_A           84 -RIVFSYRMAIGPQ--PMSASLTTVELTPSGD-GTRLTYTEQGAFFDGVDSAKGREEGTRGLLEALAAELQK  151 (161)
T ss_dssp             -EEEEEEEEEETTE--EEEEEEEEEEEEEETT-EEEEEEEEEEEEETTCCCHHHHHHHHHHHHHHHHHHC--
T ss_pred             -EEEEEEEecCCCC--CCCceEEEEEEEECCC-CEEEEEEEEecCcchhhhHHHHHHHHHHHHHHHHHHHhh
Confidence             566665321 111  2345678899999865 69999998863 2         34555666667776643

>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides}

Probab=98.95  E-value=5.1e-08  Score=70.05  Aligned_cols=132  Identities=14%  Similarity=0.123  Sum_probs=85.5

Q ss_pred             cEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEee-cCCcceeeEEEEEEeeCCCCe
Q 032152            3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA-DGGNFKYAKHRIDELDKDNFR   81 (146)
Q Consensus         3 ~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~~~   81 (146)
                      ..+++.++.|+||+++||+++. |... +++|.+..--.+...+++..+|..-.+.+. ++|....+.-++.++++.+ +
T Consensus        12 ~~~i~~~~~i~Ap~e~Vw~alt-dp~~-~~~W~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~-r   88 (164)
T 3pu2_A           12 ATRLEFRRHFAATPEQLWAALT-SPAL-LPAWLFARGWPMTECVFEPHKGGLIRQVWTGPEGRTRGLTGRVILAEPPH-R   88 (164)
T ss_dssp             TTEEEEEEEESSCHHHHHHHHH-CTTT-GGGTSCBTTBCEEEEEECCSTTCEEEEEEECGGGCEEEEEEEEEEEETTT-E
T ss_pred             CceEEEEEEECCCHHHHHHHhc-CHHH-HhhEeCCCCeeeEEEEEeccCCCEEEEEEECCCCCEEEEEEEEEEEcCCC-E
Confidence            3578899999999999999999 9998 888886321122333455455554444443 2332224566778887755 6


Q ss_pred             eEEEEE-ecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe------------chhhhhHHHHHHHHHhhC
Q 032152           82 CKYTVI-EGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT------------KEKAMGLHKIVEAHLLAN  141 (146)
Q Consensus        82 ~~y~i~-eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~------------~~~~~~~~k~~e~~l~~~  141 (146)
                      +.|+.. .++-.+   .....++.++|.++ +|.++++..|..            .+.+..++..|+++|.+-
T Consensus        89 l~~t~~~~~~~~~---~~s~vt~~l~~~~~-gT~l~l~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~~~  157 (164)
T 3pu2_A           89 LIHSELYDEDWTG---GETLVTLQLLPVEG-GTELAMAVDYATPEARDAVAASAMATEMEEAYRHLDVMLAAL  157 (164)
T ss_dssp             EEEEEBCC---CC---SCEEEEEEEEEETT-EEEEEEEEECSSTTHHHHHHTSTHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEeccCCCCC---CCEEEEEEEEEcCC-CEEEEEEEEeCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence            667753 121111   12578899999864 699999999754            134456777788887653

>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli}

Probab=98.92  E-value=3.9e-09  Score=75.25  Aligned_cols=126  Identities=13%  Similarity=0.210  Sum_probs=83.1

Q ss_pred             cEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCee
Q 032152            3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         3 ~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (146)
                      ..+++.++.|+||+++||+++. |+.. +++|+|. ..+.     +..+|..-.+.+. |+.  .+..++.++++ .+++
T Consensus         8 ~~~i~~~~~i~Ap~e~Vw~alt-dp~~-~~~W~~~-~~~~-----~~~~Gg~~~~~~~-g~~--~~~~~v~e~~p-~~~l   75 (160)
T 2lak_A            8 SFVVRREAHLAAPPAAVFALMT-DPEK-ILRWMGT-EAEV-----EPEPGGLYLVNVT-GAR--FARGSFREVVP-VHRL   75 (160)
T ss_dssp             CCEEEEEEEESSCHHHHHHHHH-CHHH-HHHTSCS-SEEE-----SCSTTCCEEECSS-TTC--CSSCCEEEEET-TTEE
T ss_pred             CceEEEEEEeCCCHHHHHHHhc-ChHH-HhhhCCC-ccee-----eccCCCEEEEEEe-CCc--eEEEEEEEEcC-CCEE
Confidence            3579999999999999999999 9999 8999986 3222     2223333334444 332  45567777876 4477


Q ss_pred             EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEE-EEe-------chhhhhHHHHHHHHHhhC
Q 032152           83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE-FHT-------KEKAMGLHKIVEAHLLAN  141 (146)
Q Consensus        83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~-y~~-------~~~~~~~~k~~e~~l~~~  141 (146)
                      .|+...++....+-.....++.|+|.+ ++|.++|+.+ |..       .+.+...+..|.++|-+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~gT~l~~~~~~~~~~~~~~~~~~gw~~~L~~Lk~~le~~  141 (160)
T 2lak_A           76 AYSFGWDGSEVVPPGSSLVEIDLIEQG-GGTLLRLTHSGLPSAEQCAGHEEGWAHYLGRLTEVAAGR  141 (160)
T ss_dssp             EECCCCCSSSCCCTTSCEEEEEEEECS-SSEEEEEEEECCCSHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             EEEEEecCCCCCCCCcEEEEEEEEECC-CCEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            777643321000112467889999986 4799999887 533       344566777777777654

>3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A*

Probab=98.89  E-value=1.3e-07  Score=68.05  Aligned_cols=132  Identities=14%  Similarity=0.059  Sum_probs=85.1

Q ss_pred             cEEEEEEEEecCCHHHHHHHhhhccccccccccccc--eeeEEEEcCCCCCCcEEEEEee-cCCcceeeEEEEEEeeCCC
Q 032152            3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQA--IKSVEILQGDGGAGSIKITNFA-DGGNFKYAKHRIDELDKDN   79 (146)
Q Consensus         3 ~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~--v~s~~~~eGdg~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~   79 (146)
                      ..++..++.|+||+++||+++. |... +.+|.+..  .. +...++|-.+|..-.+.+. ++|..-.+.-++.++++.+
T Consensus         8 ~~~i~~~r~i~Ap~e~Vw~a~T-dpe~-l~~W~~~~~~~~-~~~~~~d~~~GG~~~~~~~~~~G~~~~~~g~v~ev~p~~   84 (166)
T 3put_A            8 HTTFVIERRLTAPVARVFRAWS-TPES-KRQWFACHGEWV-PLEYALDFRPGGTERNYTADTDGLLHAYDARYIDIVPDT   84 (166)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHH-CHHH-HHHHHTCC---C-CSEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEEETTT
T ss_pred             cceEEEEEEECCCHHHHHHHhC-CHHH-HHhcCCCCCCce-eeEEEeCcccCCEEEEEEECCCCCEEEEEEEEEEEcCCc
Confidence            3678899999999999999999 9998 78887421  11 1112344334444444443 3343234667888887755


Q ss_pred             CeeEEEEEec-CCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe----------chhhhhHHHHHHHHHhhC
Q 032152           80 FRCKYTVIEG-DMLGTILESIVYDVKFEASGNGGSICKVASEFHT----------KEKAMGLHKIVEAHLLAN  141 (146)
Q Consensus        80 ~~~~y~i~eg-~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~----------~~~~~~~~k~~e~~l~~~  141 (146)
                       ++.|+..-. +-.  +......++.|+|.+ |+|.++++....+          .+.+..++..|.+||-..
T Consensus        85 -rlv~t~~~~~~~~--~~~~s~vt~~l~~~~-~gT~ltl~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~le~~  153 (166)
T 3put_A           85 -RIIYAYEMKLGQT--RISASLVTVAFDVEP-SGTRMVFTEQVVFLDGYGDNGARLQGTEIGLDNLELFLVRE  153 (166)
T ss_dssp             -EEEEEEEEEETTE--EEEEEEEEEEEEECS-SSEEEEEEEEEEEETTCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             -EEEEEEEecCCCC--CCCceEEEEEEEECC-CCEEEEEEEEecCccchhhHHHHHHHHHHHHHHHHHHHhcC
Confidence             566664321 111  234567889999986 5799999987642          455667778888887654

>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti}

Probab=98.88  E-value=1.2e-07  Score=67.75  Aligned_cols=126  Identities=17%  Similarity=0.157  Sum_probs=81.7

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccc----eeeEEEEcCCCCCCcEEEEEee-cCCcceeeEEEEEEeeCC
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQA----IKSVEILQGDGGAGSIKITNFA-DGGNFKYAKHRIDELDKD   78 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~----v~s~~~~eGdg~~Gsir~~~~~-~g~~~~~~kErl~~~D~~   78 (146)
                      .++..++.|+||+++||+++. |... +++|.+..    +..++   .|-.+|..-.+.+. ++|....+.-++.++++.
T Consensus         9 ~~i~~~r~i~Ap~e~Vw~alt-dp~~-~~~W~~~~~g~~~~~~~---~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~   83 (162)
T 3q64_A            9 STFIIERLYPAPPSKVFFALG-NADA-KRRWFTDPDNPMPGRFE---MDFRVGGKEVNAGGPKDGPIHVYTATYQDIVPD   83 (162)
T ss_dssp             EEEEEEEEESSCHHHHHHHHH-CHHH-HHHHSSCTTSCCGGGCE---ECCSTTCEEEEEECCTTSCCEEEEEEEEEEETT
T ss_pred             ceEEEEEEeCCCHHHHHHHHC-CHHH-HhhcCCCCCCccceEEE---ECCccCCEEEEEEECCCCCEEEEEEEEEEEcCC
Confidence            568889999999999999999 9998 88998542    11122   34334444444443 333323466778888775


Q ss_pred             CCeeEEEEEe--cCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe----------chhhhhHHHHHHHHHh
Q 032152           79 NFRCKYTVIE--GDMLGTILESIVYDVKFEASGNGGSICKVASEFHT----------KEKAMGLHKIVEAHLL  139 (146)
Q Consensus        79 ~~~~~y~i~e--g~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~----------~~~~~~~~k~~e~~l~  139 (146)
                      + ++.|+..-  .+.   +......++.++|.++ +|.++++.+.-+          .+....++..|++||-
T Consensus        84 ~-rl~~~~~~~~~~~---~~~~s~v~~~l~~~~~-gT~lt~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~le  151 (162)
T 3q64_A           84 Q-RIVYSYDMLFGET---RISVSLATIQLFAEGE-GTRLVLTEQGAFLDGHDTPSTREHGTGVLLDLLDAFLD  151 (162)
T ss_dssp             T-EEEEEEEEEETTE---EEEEEEEEEEEEEETT-EEEEEEEEEEEEETTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-EEEEEEEecCCCC---CCCceEEEEEEEEcCC-CEEEEEEEEecCccchhHHHHHHHHHHHHHHHHHHHHh
Confidence            5 56666532  221   2345678899999865 699999988532          3444566666666654

>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}

Probab=98.87  E-value=1.1e-07  Score=66.79  Aligned_cols=124  Identities=16%  Similarity=0.124  Sum_probs=82.9

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccc-cccceeeEEEEcCCCCCCcEEEEEee-cCCc-ceeeEEEEEEeeCCCCe
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKL-VPQAIKSVEILQGDGGAGSIKITNFA-DGGN-FKYAKHRIDELDKDNFR   81 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~-~P~~v~s~~~~eGdg~~Gsir~~~~~-~g~~-~~~~kErl~~~D~~~~~   81 (146)
                      +++.++.|+||+++||+++. |... +++| .+..--.+...+++-.+|..-.+.+. ++|. ...+.-++.++++.+ +
T Consensus         3 ~i~~~~~i~Ap~e~Vw~alt-dpe~-~~~W~~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~g~v~e~~p~~-~   79 (144)
T 2l8o_A            3 KITVEVTVYAAIEKVWKYWN-EPAH-IMKWCQASPEWHVPAAQNDLKAGGTFTTTMAAKDGSMSFDFGGVYDQVKTND-L   79 (144)
T ss_dssp             SEEEEEEECSCHHHHHHHHH-CHHH-HHHHSTTCTTCEEEEEECCCSTTCEEEEEEECTTSSCEEEEEEEEEEEETTT-E
T ss_pred             EEEEEEEECCCHHHHHHHHC-CHHH-HhhccCCCCCcccceeEEccCCCCEEEEEEECCCCCceeeeeEEEEEEeCCC-E
Confidence            46788999999999999999 9998 8899 65311123334466445554444444 3443 134566788887755 7


Q ss_pred             eEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe-------chhhhhHHHHHHHHHhhC
Q 032152           82 CKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT-------KEKAMGLHKIVEAHLLAN  141 (146)
Q Consensus        82 ~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------~~~~~~~~k~~e~~l~~~  141 (146)
                      +.|+. .|        ....++.++|.+ |+|.++++.++..       .+.+..++..|+++|-..
T Consensus        80 l~~~~-~g--------~~~v~~~l~~~~-~gT~l~~~~~~~~~~~~~~~~~Gw~~~L~~L~~~le~~  136 (144)
T 2l8o_A           80 IEYTI-GD--------GRKVRIVFTHTG-DTTNIVESFDPEETNPRELQQSGWQAILNSFKSYTENN  136 (144)
T ss_dssp             EEEEE-TT--------CCEEEEEEEECS-SSEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             EEEEe-CC--------CeEEEEEEEEcC-CCEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            77885 22        246789999975 5799999888743       345566777777777553

>1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5

Probab=98.85  E-value=8.3e-08  Score=69.47  Aligned_cols=133  Identities=14%  Similarity=0.082  Sum_probs=84.5

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccc-eeeEEEEcCCCCCCcEEEEEeec-CCcceeeEEEEEEeeCCCCe
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQA-IKSVEILQGDGGAGSIKITNFAD-GGNFKYAKHRIDELDKDNFR   81 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~-v~s~~~~eGdg~~Gsir~~~~~~-g~~~~~~kErl~~~D~~~~~   81 (146)
                      .++..++.|+||+++||+++. |... +++|++.. ++ +...+++..+|..-.+.+.. +|......-++.++++.+ +
T Consensus        10 ~~i~~~r~i~Ap~e~Vw~alt-dp~~-~~~W~~p~~~~-~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~~v~e~~p~~-r   85 (178)
T 1xfs_A           10 LDLMLKRELAVPVNLVWRGLT-EPEL-LKKWFVPKPWS-ISDCRVDLRPGGEFYTVMQDPEGNKFPNSGCFLEVTDEK-R   85 (178)
T ss_dssp             TEEEEEEEESSCHHHHHHHHH-CHHH-HTTTSSCTTCE-EEEEEECCSTTCEEEEEEECTTCCEEEEEEEEEEEETTT-E
T ss_pred             ceEEEEEEecCCHHHHHHHhC-CHHH-HhhCCCCCCee-eeEEEEeeECCcEEEEEEECCCCCEEEEEEEEEEEeCCC-E
Confidence            468888999999999999999 9998 88997532 22 22334555566665565543 333234566788887655 6


Q ss_pred             eEEEEE-ecCCCCcc--------e--eEEEEEEEEEEcCCCceEEEEEEEEEe---c---------hhhhhHHHHHHHHH
Q 032152           82 CKYTVI-EGDMLGTI--------L--ESIVYDVKFEASGNGGSICKVASEFHT---K---------EKAMGLHKIVEAHL  138 (146)
Q Consensus        82 ~~y~i~-eg~~~~~~--------~--~~y~~t~~v~p~~~g~s~v~w~~~y~~---~---------~~~~~~~k~~e~~l  138 (146)
                      +.|+.. .++-.+..        .  .....++.++|.+ ++|.++++.+|..   .         +.+..++..|.++|
T Consensus        86 l~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~-~gT~l~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l  164 (178)
T 1xfs_A           86 LIWTSALVKNYRPAVPATTSDKECAHIVMTAVIELQPTS-SGTRYTACAMHNTPGQRKLHEEMGFHEGWGTTITQLEELL  164 (178)
T ss_dssp             EEEESSEEGGGEECCC-----------CCEEEEEEEECS-SSEEEEEEEECSSHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEEcCCCCccccccccccccccccEEEEEEEEECC-CCEEEEEEEEcCCHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            667752 21100000        0  0357789999986 4799999999764   1         23445566677766


Q ss_pred             hhC
Q 032152          139 LAN  141 (146)
Q Consensus       139 ~~~  141 (146)
                      -+.
T Consensus       165 e~~  167 (178)
T 1xfs_A          165 KQE  167 (178)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            543

>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti}

Probab=98.84  E-value=1.1e-07  Score=67.41  Aligned_cols=124  Identities=12%  Similarity=0.045  Sum_probs=79.6

Q ss_pred             CccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCC
Q 032152            1 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNF   80 (146)
Q Consensus         1 m~~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~   80 (146)
                      |...+++.++.|+|||++||+++. |... +++|.|.    +   +++..+|..-.+. .+.+.  .+.-++.++++.+ 
T Consensus         6 ~~~~~i~~~~~i~Ap~e~Vw~alt-dp~~-~~~W~~~----~---~~~~~~Gg~~~~~-~~~g~--~~~g~v~e~~p~~-   72 (151)
T 3q63_A            6 TENRTVVVERQISHPPEKLWRALT-QPHL-IEEWLMK----N---DFKPAVGHRFNIS-ADWGG--VLDCEVLAVEPNK-   72 (151)
T ss_dssp             ---CEEEEEEEESSCHHHHHHHHH-CHHH-HHHHSCE----E---CCCSSTTCEEEEE-CTTSC--EEEEEEEEEETTT-
T ss_pred             CCCCeEEEEEEeCCCHHHHHHHHc-CHHH-HHhhcCc----C---CCccCCCCEEEEE-CCCCC--EEEEEEEEEeCCC-
Confidence            345678999999999999999999 9998 8999983    1   3444455554444 22221  4666788887765 


Q ss_pred             eeEEEEEecC--CCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe----------chhhhhHHHHHHHHHhh
Q 032152           81 RCKYTVIEGD--MLGTILESIVYDVKFEASGNGGSICKVASEFHT----------KEKAMGLHKIVEAHLLA  140 (146)
Q Consensus        81 ~~~y~i~eg~--~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~----------~~~~~~~~k~~e~~l~~  140 (146)
                      ++.|+...++  ...  -..-..++.++|.++ +|.++++...-+          .+.+..++..|.+||-.
T Consensus        73 ~l~~~~~~~~~~~~~--~~~s~v~~~l~~~~~-gT~l~l~~~g~~~~~~~~~~~~~~GW~~~L~~L~~~le~  141 (151)
T 3q63_A           73 TLSYTWNLAHQDPAF--DLRSVVTFTLTPTPT-GTHLRMEQSGFRPDQRRAYGGAKMGWPQFFEKLEQLLDR  141 (151)
T ss_dssp             EEEEECBBCCSSTTT--CBCCEEEEEEEECSS-SEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             EEEEEEecCCCCCCC--CCCeEEEEEEEEcCC-CEEEEEEEeCCCcchHHHHHhhhhCHHHHHHHHHHHHhc
Confidence            6677764322  111  123467788999865 699998877333          23344566667766543

>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}

Probab=98.84  E-value=2.1e-07  Score=65.26  Aligned_cols=123  Identities=12%  Similarity=0.110  Sum_probs=81.1

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccc-ccc-ceeeEEEEcCCCCCCcEEEEEee-cCCc-ceeeEEEEEEeeCCCC
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKL-VPQ-AIKSVEILQGDGGAGSIKITNFA-DGGN-FKYAKHRIDELDKDNF   80 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~-~P~-~v~s~~~~eGdg~~Gsir~~~~~-~g~~-~~~~kErl~~~D~~~~   80 (146)
                      +++.++.|+||+++||+++. |... +++| ++. -+ .+...+++-.+|..-.+.+. ++|. .-.+.-++.++++.+ 
T Consensus         2 ~i~~~~~i~Ap~e~Vw~alt-dp~~-~~~W~~~p~~~-~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~~g~v~e~~p~~-   77 (144)
T 2lgh_A            2 KISIEAHIEQEIEAVWWAWN-DPDC-IARWNAASSDW-HTTGSRVDLVVGGRFCHHMAAKDGSAGFDFTGTFTRVEAPT-   77 (144)
T ss_dssp             EEEEEEEESSCHHHHHHHHH-CHHH-HTTSSSCSTTE-EEEEEEECCSTTCEEEEEEEETTSSCEEEEEEEEEEEETTT-
T ss_pred             EEEEEEEeCCCHHHHHHHhC-CHHH-HhccCCCCCCc-ccceEEECCCCCCEEEEEEECCCCCceEEeEEEEEEEeCCC-
Confidence            57889999999999999999 9998 8898 653 12 12223344344444444443 3343 234566788887655 


Q ss_pred             eeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe-------chhhhhHHHHHHHHHhhC
Q 032152           81 RCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT-------KEKAMGLHKIVEAHLLAN  141 (146)
Q Consensus        81 ~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------~~~~~~~~k~~e~~l~~~  141 (146)
                      ++.|+. .|        ....++.++|.+ |+|.++.+.++..       .+.+..++..|.++|-..
T Consensus        78 ~l~~~~-~~--------~~~~~~~l~~~~-~gT~l~~~~~~~~~~~~~~~~~Gw~~~L~~L~~~le~~  135 (144)
T 2lgh_A           78 RLSFVM-DD--------GREVDVQFASEP-GGTWVQETFDAETSHTPAQQQAGWQGILDNFKRYVEAA  135 (144)
T ss_dssp             EEEEEE-TT--------CCEEEEEEEEET-TEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEEe-cC--------CcEEEEEEEEcC-CCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            778885 32        146688999985 5799988887743       344556677777776543

>2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; NMR {Cytophaga hutchinsonii}

Probab=98.83  E-value=2.3e-07  Score=67.16  Aligned_cols=132  Identities=12%  Similarity=0.031  Sum_probs=82.9

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccc-eeeEEEEcCCCCCCcEEEEEee-cCCcceeeEEEEEEeeCCCCe
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQA-IKSVEILQGDGGAGSIKITNFA-DGGNFKYAKHRIDELDKDNFR   81 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~-v~s~~~~eGdg~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~~~   81 (146)
                      .+++.++.|+||+++||+++. |... +++|++.. + .+...++|-.+|..-.+.+. ++|......-++.++++.+ +
T Consensus        16 ~~i~~~~~i~Ap~e~Vw~a~t-dpe~-~~~W~~p~~~-~~~~~~~d~~~Gg~~~~~~~~~~G~~~~~~g~v~e~~p~~-r   91 (175)
T 2lf2_A           16 KTITIKREFAAVRAIVWEAFT-RAEI-LDQWWAPKPW-KAKTKSMDFKEGGTWLYAMVGPNGEEHWSICEYAIIKPIE-R   91 (175)
T ss_dssp             TEEEEEEEESSCHHHHHHHHT-CHHH-HHHSSSSSSS-EEEEEEECCSTTCEEEEEEECSSSCEEEEEEEECCCCSSS-E
T ss_pred             ceEEEEEEEcCCHHHHHHHhC-CHHH-HhhCcCCCCc-cceEEEEeccCCCEEEEEEECCCCCEEEeEEEEEEEcCCC-E
Confidence            468889999999999999999 9998 78886532 2 22223455445554444443 3443234666888887755 6


Q ss_pred             eEEEEEecC--CCC-cceeEEEEEEEEEEcCCCceEEEEEEEEEe---c---------hhhhhHHHHHHHHHhh
Q 032152           82 CKYTVIEGD--MLG-TILESIVYDVKFEASGNGGSICKVASEFHT---K---------EKAMGLHKIVEAHLLA  140 (146)
Q Consensus        82 ~~y~i~eg~--~~~-~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~---~---------~~~~~~~k~~e~~l~~  140 (146)
                      +.|+..-++  ..+ ..+.....++.|+|.+ |+|.++.+..|.+   .         +.+...+..|.++|-+
T Consensus        92 l~~t~~~~~~~g~p~~~~~~~~v~~~l~~~~-~gT~l~~~~~~~~~~~~~~~~~~~~~~Gw~~~L~~L~~~le~  164 (175)
T 2lf2_A           92 FTGKDGFTDASGKLNTEMPRSNWDMRFIDKG-EITEVQYHISYDDVAQLEATIQMGFKEGITMAMENLDELLVS  164 (175)
T ss_dssp             EEEEEEEESSTTCCCTTSCCEEEEEEEEEET-TEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCCCCcCCCCCcEEEEEEEEECC-CCEEEEEEEecCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            667653221  111 0122467889999985 5799999988765   1         2234556667666643

>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0

Probab=98.82  E-value=2.3e-07  Score=67.04  Aligned_cols=132  Identities=14%  Similarity=0.115  Sum_probs=83.5

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccc-cceeeEEEEcCCCCCCcEEEEEee-cCCcceeeEEEEEEeeCCCCe
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVP-QAIKSVEILQGDGGAGSIKITNFA-DGGNFKYAKHRIDELDKDNFR   81 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P-~~v~s~~~~eGdg~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~~~   81 (146)
                      .++..++.|+||+++||+++. |... +.+|.+ .-.. +...+.|-.+|..-.+.+. ++|..-...-++.++++.+ +
T Consensus        13 ~~i~~~r~i~Ap~e~Vw~a~T-dpe~-l~~W~~p~~~~-~~~~~~d~r~GG~~~~~~~~~~G~~~~~~g~~~ev~p~~-r   88 (168)
T 3uid_A           13 LTLTITAEFAAPVTRIWQIYA-DPRQ-LEKVWGPPSHP-ATVVDHDLRPGGRVTYFMTGPDGEKYAGYWEITAVDEPH-S   88 (168)
T ss_dssp             TEEEEEEEESSCHHHHHHHHH-SHHH-HHHHHCCTTSC-CEEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEEETTT-E
T ss_pred             CEEEEEEEEcCCHHHHHHHhC-CHHH-HhhEeCCCCee-eeEEEEcccCCcEEEEEEECCCCCEEeeEEEEEEEeCCc-E
Confidence            457889999999999999999 9998 777754 2222 2223455444443334433 3343234667788887765 5


Q ss_pred             eEEEEEe----cCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe---c---------hhhhhHHHHHHHHHhhC
Q 032152           82 CKYTVIE----GDMLGTILESIVYDVKFEASGNGGSICKVASEFHT---K---------EKAMGLHKIVEAHLLAN  141 (146)
Q Consensus        82 ~~y~i~e----g~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~---~---------~~~~~~~k~~e~~l~~~  141 (146)
                      +.|+-.-    |.+.. .......++.++|.+ |+|.++++..|..   .         +.+...+..|++||.+.
T Consensus        89 lv~t~~~~~~~g~p~~-~~~~s~vt~~l~~~~-~gT~lt~~~~~~~~~~~~~~~~~g~~~GW~~~L~~L~~~l~~~  162 (168)
T 3uid_A           89 FSFLDGFADEDFNPNT-DLPVSTNVYTFTEHD-GGTRATYVGTYASAEALQQVLDMGVIEGASSAINQIDALLTAT  162 (168)
T ss_dssp             EEEEEEEECTTSCBCS-SCCCEEEEEEEEEET-TEEEEEEEEECSCHHHHHHHHHTTHHHHHHHHHHHHHHHTCSC
T ss_pred             EEEEEeeccCCCCcCC-CCCcEEEEEEEEECC-CCEEEEEEEecCCHHHHHHHHHhcHHHHHHHHHHHHHHHHHhh
Confidence            6666532    22110 012457889999985 6799999977655   1         33456677788887664

>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}

Probab=98.80  E-value=1.7e-07  Score=64.83  Aligned_cols=116  Identities=13%  Similarity=0.153  Sum_probs=79.5

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY   84 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y   84 (146)
                      +++.++.|+|||++||+++. |+.. +++|.+.   .   .+++-.+|..-.+.+....  ....-++.++++.+ ++.|
T Consensus         2 ~i~~~~~i~ap~e~Vw~alt-d~~~-~~~W~~~---~---~~~~~~~Gg~~~~~~~~~~--~~~~~~v~~~~p~~-~l~~   70 (135)
T 3q6a_A            2 DIITKMQVDVPRETVFEAFV-DPEK-IGGFWFS---S---SSERWEQGKTITLRYEEYD--AELNINIERVEDNQ-LIAF   70 (135)
T ss_dssp             CEEEEEEESSCHHHHHHHHH-CTTT-GGGTSSS---E---ESSCCCTTCEEEEECGGGT--C-CEEEEEEEETTT-EEEE
T ss_pred             eEEEEEEeCCCHHHHHHHHc-CHHH-hcccCCC---C---CcccccCCCEEEEEEcCcC--ceEEEEEEEEcCCC-EEEE
Confidence            57889999999999999999 9999 8999764   1   2455556666556554321  13344677777764 6777


Q ss_pred             EEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe----------chhhhhHHHHHHHHHhhCC
Q 032152           85 TVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT----------KEKAMGLHKIVEAHLLANP  142 (146)
Q Consensus        85 ~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~----------~~~~~~~~k~~e~~l~~~~  142 (146)
                      +...         . ..++.++|.+ ++|.++++....+          .+.+..++..|.+||-...
T Consensus        71 ~~~~---------g-~~~~~l~~~~-~gT~l~~~~~~~~~~~~~~~~~~~~GW~~~l~~L~~~le~g~  127 (135)
T 3q6a_A           71 TWGA---------H-PITIQFEESE-AGTVVTTTEKDFDTQDVKQLLGQKEGWVYMLSCLKVYLEHGV  127 (135)
T ss_dssp             EETT---------E-EEEEEEEEET-TEEEEEEEECCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             EEcC---------C-eEEEEEEECC-CCEEEEEEEcCCCcchHHHHhhchhCHHHHHHHHHHHHhcCc
Confidence            7632         1 6789999975 6799998877433          2344566677777776654

>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5

Probab=98.76  E-value=1.3e-07  Score=66.31  Aligned_cols=95  Identities=13%  Similarity=0.139  Sum_probs=69.7

Q ss_pred             cEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCee
Q 032152            3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         3 ~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (146)
                      ..+++.++.|+||+++||+++. |+.. +++|+|. .      +++..+|..-.+.+ +++   .+.-++.++++.+ ++
T Consensus         4 ~~~i~~~~~i~Ap~e~Vw~alt-d~~~-~~~W~~~-~------~~~~~~Gg~~~~~~-~~g---~~~~~v~e~~p~~-~l   69 (146)
T 1xn5_A            4 LPDIKKEVRFNAPIEKVWEAVS-TSEG-LAFWFME-N------DLKAETGHHFHLQS-PFG---PSPCQVTDVERPI-KL   69 (146)
T ss_dssp             CCCEEEEEEESSCHHHHHHHTT-SHHH-HHTTSCC-B------CCCSCTTCEEEEEC-SSC---EEEEEEEEEETTT-EE
T ss_pred             CcEEEEEEEEcCCHHHHHHHHh-ChhH-HHHhcCC-C------CCCccCCCEEEEEe-cCC---ceEEEEEEEeCCc-EE
Confidence            3678999999999999999999 9999 8999985 2      24434566555555 333   3677888888754 77


Q ss_pred             EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEE
Q 032152           83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE  120 (146)
Q Consensus        83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~  120 (146)
                      .|+.. +.       ....++.++|.++ +|.++++.+
T Consensus        70 ~~~~~-~~-------~~~~~~~l~~~~~-gT~l~~~~~   98 (146)
T 1xn5_A           70 SFTWD-TD-------GWSVTFHLKEEEN-GTIFTIVHS   98 (146)
T ss_dssp             EEEET-TT-------TEEEEEEEEECSS-SEEEEEEEE
T ss_pred             EEEEe-CC-------CEEEEEEEEEcCC-CEEEEEEEE
Confidence            77763 21       2457889999864 699998876

>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis}

Probab=98.76  E-value=1.6e-07  Score=67.12  Aligned_cols=132  Identities=11%  Similarity=0.045  Sum_probs=83.8

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEee-cCCcceeeEEEEEEeeCCCCee
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA-DGGNFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~~~~   82 (146)
                      .+++.++.|+||+++||+++. |... +++|++..=-.+...++|-.+|..-.+.+. ++|..- ..-++.++++.+ ++
T Consensus         8 ~~i~~~~~i~Ap~e~Vw~a~t-dpe~-~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~G~~~-~~g~v~e~~p~~-rl   83 (164)
T 2l9p_A            8 NKIIFTRTFSAPINKVFDAYT-KREL-FEQWFHPQDASVTVYDFNATKGGSAFYAIQAPQMISY-TIAEYLQVDAPY-YI   83 (164)
T ss_dssp             SEEEECCEESSCHHHHHHHHH-CHHH-HTTTCCCTTCEEEEEECCCSTTEEEEEEEEETTEEEE-EEEEESCCBTTT-EE
T ss_pred             ceEEEEEEeCCCHHHHHHHhC-CHHH-HHhccCCCCceeeEEEEeccCCCEEEEEEECCCCCEE-EEEEEEEEcCCC-EE
Confidence            468889999999999999999 9998 788865311122334566555655444443 333212 677888887755 66


Q ss_pred             EEEEEecCC--CCc-ceeEEEEEEEEEEcCCCceEEEEEEEEEe---c---------hhhhhHHHHHHHHHhh
Q 032152           83 KYTVIEGDM--LGT-ILESIVYDVKFEASGNGGSICKVASEFHT---K---------EKAMGLHKIVEAHLLA  140 (146)
Q Consensus        83 ~y~i~eg~~--~~~-~~~~y~~t~~v~p~~~g~s~v~w~~~y~~---~---------~~~~~~~k~~e~~l~~  140 (146)
                      .|+...++.  .+. .......++.++|.+ |+|.++.+..|..   .         +.+...+..|.++|-+
T Consensus        84 ~~t~~~~~~~g~p~~~~~~~~v~~~l~~~~-~gT~l~~~~~~~~~~~~~~~~~~~~~~Gw~~~L~~L~~~le~  155 (164)
T 2l9p_A           84 EYLDYFATSKGEKDTSMPGMHITLNFEEVK-GKTTVTSTSTFPTESAAQQAIDMGVETGMNSTLNQLEKLLNQ  155 (164)
T ss_dssp             EEEEEEEBTTBSCCSSSCCEEEEEEECCCS-SSEEEEEEEECSSTTHHHHHHHHTHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEEecCCCCCccCCCCceEEEEEEEECC-CCEEEEEEEEcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            677543211  110 112367888998875 5799999988765   1         2234556667777654

>2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} SCOP: d.129.3.5

Probab=98.74  E-value=2.2e-07  Score=68.48  Aligned_cols=127  Identities=9%  Similarity=-0.004  Sum_probs=86.5

Q ss_pred             CccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecC--------------Ccce
Q 032152            1 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADG--------------GNFK   66 (146)
Q Consensus         1 m~~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g--------------~~~~   66 (146)
                      |...+++.++.|+||+++||+++. |... +++|.+. .      +.+-.+|..-.+.+...              +...
T Consensus        16 ~~~~~i~~~~~i~Ap~e~Vw~alt-dpe~-~~~W~~~-~------~~d~~~Gg~~~~~~~~~~~~~~~~p~~~~~~g~~~   86 (191)
T 2k5g_A           16 LDAQSIRFERLLPGPIERVWAWLA-DADK-RARWLAG-G------ELPRQPGQTFELHFNHAALTAETAPARYAQYDRPI   86 (191)
T ss_dssp             SCCSSEEEEEEESSSSHHHHHHHH-CHHH-HTTTSCC-C------CCCSSTTCEEEEEECGGGSCCSSCCSSCSGGGSCE
T ss_pred             cCCCeEEEEEEeCCCHHHHHHHHc-CHHH-HhhcCCC-C------CCCccCCCEEEEEEcCCccccccCcccccccCCCc
Confidence            445678899999999999999999 9998 8999985 2      34445566666665431              0112


Q ss_pred             eeEEEEEEeeCCCCeeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEE-EEe-------chhhhhHHHHHHHHH
Q 032152           67 YAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE-FHT-------KEKAMGLHKIVEAHL  138 (146)
Q Consensus        67 ~~kErl~~~D~~~~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~-y~~-------~~~~~~~~k~~e~~l  138 (146)
                      .+.-++.++++.+ ++.|+...++..    .....++.++|.++ +|.++++.+ |..       ...+..++..|.++|
T Consensus        87 ~~~g~v~e~~pp~-rl~~~~~~~~~~----~~~~v~~~l~~~~~-gT~l~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l  160 (191)
T 2k5g_A           87 VARHTLLRCEPPR-VLALTWGGGAGE----APSEVLFELSEAGE-QVRLVLTHTRLADRAAMLDVAGGWHAHLAVLAGKL  160 (191)
T ss_dssp             EEEEEEEEEETTT-EEEEECCCCSSS----SCCEEEEEEEECSS-SEEEEEEEECCCSHHHHHHHTTTTTTHHHHHHHHH
T ss_pred             eeEEEEEEecCCC-EEEEEeecCCCC----CCEEEEEEEEEcCC-CEEEEEEEecCCCHHHHHHHHHhHHHHHHHHHHHH
Confidence            4566788887665 677776433211    13467888899864 699988877 543       345567778888887


Q ss_pred             hhCC
Q 032152          139 LANP  142 (146)
Q Consensus       139 ~~~~  142 (146)
                      -..+
T Consensus       161 e~~~  164 (191)
T 2k5g_A          161 AGQA  164 (191)
T ss_dssp             HTSC
T ss_pred             CCCC
Confidence            6553

>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}

Probab=98.61  E-value=1.2e-05  Score=58.42  Aligned_cols=131  Identities=15%  Similarity=0.110  Sum_probs=84.7

Q ss_pred             cEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecC--Ccc-eeeEEEEEEeeCCC
Q 032152            3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADG--GNF-KYAKHRIDELDKDN   79 (146)
Q Consensus         3 ~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g--~~~-~~~kErl~~~D~~~   79 (146)
                      ...+..+..|++||+++|+++. |... .|.|.|. +.++++++.+++ -.+-.+.+...  ... ..+--+-...|+++
T Consensus        26 ~~~~k~~~~v~~s~~~v~~~l~-D~~~-~~~W~~~-~~~~~vle~~~~-~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~g  101 (189)
T 3qsz_A           26 LREFRGEVRLKAAADDVVKVLR-DANA-FRQWMPD-VAASELLKATDT-EQYHYLDNSAPWPVSNRDGVYHFTYEKAGDG  101 (189)
T ss_dssp             SCEEEEEEEESSCHHHHHHHHH-CGGG-GGGTSTT-EEEEEEEEECSS-EEEEEEEECCSSSCCCEEEEEEEEEEECTTS
T ss_pred             eEEEEEEEEEECCHHHHHHHHH-hHHH-hhhHHHh-cCEEEEEeecCC-ceEEEEEeecCCCcCCcceEEEEEEEECCCC
Confidence            3457788899999999999998 9999 9999996 888888875422 23333333322  111 23333322233333


Q ss_pred             CeeEEEEEecCC-CC---c--ceeEEEEEEEEEEcCCCceEEEEEEEEEe-------------chhhhhHHHHHHHHHh
Q 032152           80 FRCKYTVIEGDM-LG---T--ILESIVYDVKFEASGNGGSICKVASEFHT-------------KEKAMGLHKIVEAHLL  139 (146)
Q Consensus        80 ~~~~y~i~eg~~-~~---~--~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------------~~~~~~~~k~~e~~l~  139 (146)
                       ++...+..... .|   .  ..+.+.+.+.+.| ++|+|.+++....+|             +.....+++.|.+.+.
T Consensus       102 -~~~i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G~iP~~lvn~~~~~~~~~~l~~L~k~~~  178 (189)
T 3qsz_A          102 -AITVRVEAVPDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGGSIPSWLANQTVVETPFGTLKALRSHLR  178 (189)
T ss_dssp             -CEEEEEEECTTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCSSSCHHHHHHTTTHHHHHHHHHHHHHHT
T ss_pred             -eEEEEEEcCCCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             44333333221 11   0  1567889999999 888999999999999             4555667777766654

>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A

Probab=98.61  E-value=3.5e-08  Score=69.89  Aligned_cols=94  Identities=7%  Similarity=0.029  Sum_probs=66.0

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeE
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCK   83 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (146)
                      .+++.++.|+||+++||+++. |+.. +++|+|. +      +++..+|....+.+ ++|.   +.-++.++++.+ ++.
T Consensus        10 ~~i~~~~~i~Ap~e~Vw~alt-d~~~-~~~W~~~-~------~~~~~~Gg~~~~~~-~~g~---~~~~v~e~~p~~-~l~   75 (152)
T 2kew_A           10 PDITKSITLEAPIQKVWETVS-TSEG-IAKWFMP-N------DFQLKEGQEFHLQS-PFGP---SPCKVLAVQAPT-ELS   75 (152)
T ss_dssp             CCEEEEEEECSCHHHHHHHSS-SSHH-HHHHHCS-C------CCCSCSSCCBCSSS-SCCS---CCBEEEEEETTT-EEE
T ss_pred             cEEEEEEEECCCHHHHHHHHh-CHHH-HHHhcCC-C------CCCCCCCCEEEEEe-cCCc---eEEEEEEEeCCc-EEE
Confidence            468999999999999999999 9999 8999985 1      24433444433434 2332   556778887764 677


Q ss_pred             EEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEE
Q 032152           84 YTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE  120 (146)
Q Consensus        84 y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~  120 (146)
                      |+...+        ....++.++|.++ +|.++++.+
T Consensus        76 ~~~~~~--------~~~~~~~l~~~~~-gT~l~~~~~  103 (152)
T 2kew_A           76 FEWDTE--------GWVVTFQLEDLGE-KTGFTLIHS  103 (152)
T ss_dssp             EECTTS--------CCEEEEEEECCSS-CEEEEEEEC
T ss_pred             EEEccC--------CEEEEEEEEECCC-CEEEEEEEE
Confidence            765322        2356788899765 599888765

>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5

Probab=98.60  E-value=9.1e-07  Score=64.95  Aligned_cols=114  Identities=9%  Similarity=0.088  Sum_probs=76.4

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeE
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCK   83 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (146)
                      .+++.++.|+|||++||+++. |+.. +++|+|. ....++     .+|..-.+.+..    ....-++.++++.+ ++.
T Consensus        36 ~~i~~~~~i~Ap~e~VW~alt-dp~~-l~~W~~~-~~~~d~-----~~Gg~~~~~~~~----~~~~~~v~e~~p~~-rl~  102 (184)
T 2nn5_A           36 IYFGTERAISASPQTIWRYLT-ETDK-LKQWFPE-LEIGEL-----GVNGFWRFILPD----FEETMPFTDYAEEK-YLG  102 (184)
T ss_dssp             EEEEEEEEESSCHHHHHHHHH-CHHH-HHHHCTT-EEEEEC-----STTCEEEEEETT----EEEEEEEEEEETTT-EEE
T ss_pred             cEEEEEEEeCCCHHHHHHHHc-CHHH-HHHhCCC-cccccc-----CCCCEEEEEEeC----CCceEEEEEecCCC-EEE
Confidence            468899999999999999999 9998 8999985 322222     223333344432    13455788887765 666


Q ss_pred             EEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe---------chhhhhHHHHHHHHHhh
Q 032152           84 YTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT---------KEKAMGLHKIVEAHLLA  140 (146)
Q Consensus        84 y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~---------~~~~~~~~k~~e~~l~~  140 (146)
                      |+.- +         ...++.++|..+|+|.++++-.|..         ...+..++..|.++|-.
T Consensus       103 ~~~~-~---------~~v~~~l~~~~~~gT~l~~~~~~~~g~~~~~~~~~~GW~~~L~~Lk~~le~  158 (184)
T 2nn5_A          103 VTWD-T---------GIIYFDLKEQAPHQTLLVFSESLPENFTTPRHKDIAGWSIVLNRLKQVVET  158 (184)
T ss_dssp             EEET-T---------EEEEEEEEEEETTEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEc-C---------eEEEEEEEECCCCCEEEEEEEeccCCccchhhHHHHHHHHHHHHHHHHHhc
Confidence            6651 1         4668889993346799999944422         34556677778777765

>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8

Probab=98.53  E-value=1.4e-06  Score=62.64  Aligned_cols=99  Identities=10%  Similarity=0.093  Sum_probs=61.0

Q ss_pred             cEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCC---
Q 032152            3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDN---   79 (146)
Q Consensus         3 ~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~---   79 (146)
                      +...+.+++|++|+++||+.+. |+.+ +|.|+|+ ++++ +. .++   +-+..+..+.|   .++=|   +++++   
T Consensus        26 m~~~~~si~I~ap~eeVy~~~~-D~e~-lP~W~~~-l~~~-~~-~~~---~~w~a~~~p~G---~v~v~---~~~~~~~g   91 (156)
T 2qpv_A           26 MQSRIIHLSVEKPWAEVYDFAA-NPGN-MPRWAAG-LAGG-LE-ADG---EDWIAKGGPLG---EVRVN---FAPHNEFG   91 (156)
T ss_dssp             CCEEEEEEEESSCHHHHHHHHH-CGGG-GGGTCGG-GTTC-CE-EET---TEEEEECSSSC---EEEEE---ECCCCSSC
T ss_pred             ccceEEEEEEcCCHHHHHHHHH-Chhh-HHHHHHh-hhhh-cc-cCC---CcEEEeccCCC---cEEEE---EecCCCce
Confidence            3467899999999999999999 9999 9999997 6664 22 221   22222212222   23222   33333   


Q ss_pred             CeeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEE
Q 032152           80 FRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFH  122 (146)
Q Consensus        80 ~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~  122 (146)
                      -...|..+.++.      .....+++.|.++ ||.|+|+..-.
T Consensus        92 v~d~~~~l~~g~------~~~~~~rv~p~g~-GTeV~~tl~~~  127 (156)
T 2qpv_A           92 VIDHVVTLPDGL------KVYNALRVTPNGS-GTEVSFTLLRL  127 (156)
T ss_dssp             BCCEEEECTTSC------EEEEEEEEEEETT-EEEEEEEEECC
T ss_pred             EEEEEEecCCCc------EEEEEEEEEeCCC-CEEEEEEEecC
Confidence            223455544332      1234678889865 59999998433

>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5

Probab=98.46  E-value=3.2e-06  Score=58.98  Aligned_cols=122  Identities=7%  Similarity=0.069  Sum_probs=76.3

Q ss_pred             CccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCC
Q 032152            1 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNF   80 (146)
Q Consensus         1 m~~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~   80 (146)
                      |...+++.++.|+||+++||+++. |... +++|.+.. ..     .+..+|..  +.+..| .   +.=++.++++.+ 
T Consensus         8 m~~~~i~~~~~i~ap~e~Vw~alt-dp~~-~~~W~~~~-~~-----~d~~~Gg~--~~~~~G-~---~~g~v~e~~p~~-   72 (145)
T 1x53_A            8 IPTCKITLKETFLTSPEELYRVFT-TQEL-VQAFTHAP-AT-----LEADRGGK--FHMVDG-N---VSGEFTDLVPEK-   72 (145)
T ss_dssp             CCEEEEEEEEEESSCHHHHHHHTT-CHHH-HHHHSCSC-CB-----CCCSTTCC--CBBTTT-T---EECCEEEEETTT-
T ss_pred             ccccEEEEEEEECCCHHHHHHHhC-CHHH-HHHhcCCC-ce-----EECCCCCE--EEEECC-e---eEEEEEEEeCCC-
Confidence            555789999999999999999998 9998 88998642 22     22222221  223333 2   333566676544 


Q ss_pred             eeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe-------chhhhh-HHHHHHHHHhh
Q 032152           81 RCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT-------KEKAMG-LHKIVEAHLLA  140 (146)
Q Consensus        81 ~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------~~~~~~-~~k~~e~~l~~  140 (146)
                      ++.|+-...+....  .....++.++|.+ ++|.++++....+       .+.+.. ++..|.++|-.
T Consensus        73 ~l~~~~~~~~~~~~--~~~~v~~~l~~~~-~gT~l~~~~~~~~~~~~~~~~~Gw~~~~l~~L~~~le~  137 (145)
T 1x53_A           73 HIVMKWRFKSWPEG--HFATITLTFIDKN-GETELCMEGRGIPAPEEERTRQGWQRYYFEGIKQTFGY  137 (145)
T ss_dssp             EEEEEEEETTSCTT--CCEEEEEECCBCS-SCEEEEEEEEEEEHHHHHHHHHTTHHHHHHHHHHHTCC
T ss_pred             EEEEEEecCCCCCC--CcEEEEEEEEECC-CCEEEEEEEECCCHHHHHHHHhchhHHHHHHHHHHHhc
Confidence            67776543332111  1246778888864 5799999866545       334454 57777777643

>4fpw_A CALU16; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.50A {Micromonospora echinospora} PDB: 2luz_A

Probab=98.44  E-value=1.6e-06  Score=63.71  Aligned_cols=114  Identities=7%  Similarity=0.012  Sum_probs=76.6

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeE
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCK   83 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (146)
                      .++..++.|++|+++||+++. |... +++|++. .      +++-.+|..-.+.+..       .=++.++++. +++.
T Consensus        21 ~~i~~~r~i~Appe~Vw~alT-dpe~-l~~W~~p-~------~~d~~~Gg~~~~~~~~-------~g~v~e~~pp-~rl~   83 (181)
T 4fpw_A           21 RSIIIRQRYDAPVDEVWSACT-DPNR-INRWFIE-P------KGDLREGGNFALQGNA-------SGDILRCEPP-RRLT   83 (181)
T ss_dssp             EEEEEEEEESSCHHHHHHHHH-CHHH-HHHHSCC-E------ESCCSTTCEEEESSSC-------EEECCEEETT-TEEE
T ss_pred             ceEEEEEEECCCHHHHHHHHc-ChHH-HhhccCC-C------ccCCCCCCEEEEEecC-------CEEEEEEcCC-cEEE
Confidence            568889999999999999999 9998 8899864 2      2444445443333221       2255667665 4777


Q ss_pred             EEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe-------chhhhhHHHHHHHHHhh
Q 032152           84 YTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT-------KEKAMGLHKIVEAHLLA  140 (146)
Q Consensus        84 y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------~~~~~~~~k~~e~~l~~  140 (146)
                      |+...++.   +  ....++.|+|.+ ++|.++++....+       .+....++..|.+||-.
T Consensus        84 ~tw~~~~~---~--~s~vt~~l~~~~-~gT~Ltl~~~~~~~e~~~~~~~GW~~~L~~L~~~L~G  141 (181)
T 4fpw_A           84 ISWVYEGK---P--DSEVELRLSEEG-DGTLLELEHATTSEQMLVEVGVGWEMALDFLGMFIRG  141 (181)
T ss_dssp             EEEBCTTS---C--CEEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             EEEEcCCC---C--cEEEEEEEEECC-CcEEEEEEEEcCCHHHHHHHHHhHHHHHHHHHHHhCC
Confidence            87644331   1  346789999974 6799998887654       34555677777777743

>2luz_A CALU16; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Micromonospora echinospora}

Probab=98.32  E-value=1.1e-05  Score=59.72  Aligned_cols=115  Identities=8%  Similarity=0.036  Sum_probs=77.2

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeE
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCK   83 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (146)
                      .++..+..+++|+++||+++- |... +.+|++. .   +   +|-.+|..-.+.+.       ..-++.++|+.. ++.
T Consensus        32 ~~l~i~R~f~Ap~e~VW~AlT-dpe~-l~~W~~~-~---~---~d~r~GG~~~~~~~-------~~g~v~ev~pp~-rL~   94 (192)
T 2luz_A           32 RSIIIRQRYDAPVDEVWSACT-DPNR-INRWFIE-P---K---GDLREGGNFALQGN-------ASGDILRCEPPR-RLT   94 (192)
T ss_dssp             EEEEEEEEESSCHHHHHHHHH-CHHH-HTTTSCC-E---E---ECCSTTSEEEETTS-------EEEEEEEEETTT-EEE
T ss_pred             eEEEEEEEeCCCHHHHHHHHc-CHHH-HheeeCC-C---c---ccCccCcEEEeecc-------ccceEEEEecCe-eEE
Confidence            367788899999999999998 9998 7899864 2   2   34333433222221       222566677655 677


Q ss_pred             EEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe-------chhhhhHHHHHHHHHhhC
Q 032152           84 YTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT-------KEKAMGLHKIVEAHLLAN  141 (146)
Q Consensus        84 y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------~~~~~~~~k~~e~~l~~~  141 (146)
                      |+--..+..     .-..++.++|.+ ++|.++.+-...+       ......++..|++||-..
T Consensus        95 ~tw~~~~~~-----~~~vt~~L~~~g-~gT~Ltl~h~~~~~~~~~~~~~GW~~~Ld~L~~~L~g~  153 (192)
T 2luz_A           95 ISWVYEGKP-----DSEVELRLSEEG-DGTLLELEHATTSEQMLVEVGVGWEMALDFLGMFIRGD  153 (192)
T ss_dssp             EEEEESSSC-----EEEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEeecCCC-----CceEEEEEEEcC-CcEEEEEEEECCCHHHHHHHhccHHHHHHHHHHHhCCC
Confidence            775433311     235688999986 4699998887766       345567888899998754

>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*

Probab=98.28  E-value=6.6e-05  Score=55.37  Aligned_cols=136  Identities=10%  Similarity=0.054  Sum_probs=88.7

Q ss_pred             cEEEEEEEEec-CCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCc--c-eeeEEE-EEEeeC
Q 032152            3 VMRFEKEVSAA-VAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGN--F-KYAKHR-IDELDK   77 (146)
Q Consensus         3 ~~~~~~e~~i~-apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~--~-~~~kEr-l~~~D~   77 (146)
                      ...+..+..|+ +|++++++++. |... .++|.|. ++++++++-+|  ..+..+.+....+  . ..+-.| ...+|+
T Consensus        51 ~~~~k~~~~i~~~~~~~v~~~l~-d~~~-r~~Wd~~-~~~~~vle~~~--~~i~~~~~~~p~p~~~RD~v~~~~~~~~~~  125 (214)
T 1ln1_A           51 LYEYKVFGVLEDCSPTLLADIYM-DSDY-RKQWDQY-VKELYEQECNG--ETVVYWEVKYPFPMSNRDYVYLRQRRDLDM  125 (214)
T ss_dssp             EEEEEEEEEETTSCHHHHHHHHH-CHHH-HHHHCTT-EEEEEEEEETT--EEEEEEEECCCTTSCCEEEEEEEEEEEECS
T ss_pred             cEEEEEEEEECCCCHHHHHHHHc-CHHH-HHHHHHH-HhhEEEeccCC--CEEEEEEEEcCCCCCCceEEEEEEEEeccc
Confidence            34577888995 99999999998 9988 8999996 88888887654  3555555553222  1 122222 223444


Q ss_pred             CCCeeEEE---EEecCCC---Ccc--eeEEEEEEEEEEcCCCceEEEEEEEEEe-------------chhhhhHHHHHHH
Q 032152           78 DNFRCKYT---VIEGDML---GTI--LESIVYDVKFEASGNGGSICKVASEFHT-------------KEKAMGLHKIVEA  136 (146)
Q Consensus        78 ~~~~~~y~---i~eg~~~---~~~--~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------------~~~~~~~~k~~e~  136 (146)
                      +...+.+-   -++-+..   +..  ...+.+.+.+.|.++++|.+++....++             +..+..+++.|.+
T Consensus       126 ~g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~G~iP~~l~n~~~~~~~~~~l~~l~k  205 (214)
T 1ln1_A          126 EGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMAR  205 (214)
T ss_dssp             TTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCSSCCCHHHHHHHHHTHHHHHHHHHHH
T ss_pred             CCCeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCCCcccHHHHHHHHHHHhHHHHHHHHH
Confidence            44322111   1221111   111  4568888999998888899999999999             4555677888888


Q ss_pred             HHhhCCC
Q 032152          137 HLLANPD  143 (146)
Q Consensus       137 ~l~~~~~  143 (146)
                      ++.+.+.
T Consensus       206 ~~~~y~~  212 (214)
T 1ln1_A          206 ACQNYLK  212 (214)
T ss_dssp             HHHTC--
T ss_pred             HHHhccc
Confidence            8887664

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=98.28  E-value=2.3e-06  Score=71.45  Aligned_cols=108  Identities=8%  Similarity=0.071  Sum_probs=84.8

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCC--CCCcEEEEEeecCCcceeeEEEE--EEeeCCCC
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDG--GAGSIKITNFADGGNFKYAKHRI--DELDKDNF   80 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg--~~Gsir~~~~~~g~~~~~~kErl--~~~D~~~~   80 (146)
                      +++.+..|++|+++||+.+. +..+ +++|.|. ...++++.+.+  .+|++- +.+..+   ..+.-|+  +.+|+.. 
T Consensus         2 ~~~~~~~i~~p~~~v~~~~~-~~~~-~~~~~p~-~~~~~~~~~~~~~~~G~~~-~~~~~~---~~w~~~~~~t~~~~~~-   73 (516)
T 3oh8_A            2 SLTTSHFIPFPREMVWDWHT-RKGA-VARLTPP-FIPLNPITQAERLADGTTI-FSLPAG---LKWVARHDLSGFLNGS-   73 (516)
T ss_dssp             CEEEEEEESSCHHHHHHHHH-STTH-HHHHSCT-TSSCEECSCCSCSSSCEEE-EECSTT---CEEEEEECGGGCBTTT-
T ss_pred             eEEEEEEccCCHHHHHHHhc-Ccch-HHHhCCC-CCceEEecCCCCCcCCeEE-EecCCC---cEEEEEEccccccCCC-
Confidence            47889999999999999998 9999 8999997 77788775432  678877 776544   3555666  6666655 


Q ss_pred             eeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           81 RCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        81 ~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      ++......|++..  +.++.-+..|++.++ ||.++..++|..
T Consensus        74 ~F~d~~~~gp~~~--~~~w~h~h~f~~~~~-gt~~~d~~~~~~  113 (516)
T 3oh8_A           74 RFTDVCLTAPVKA--LANWRHVHNFVDQDG-GTLITDSVSTRL  113 (516)
T ss_dssp             EEEEECCSCSSGG--GSSCEEEEEEEEETT-EEEEEEEEECSS
T ss_pred             eEEEEeccCcccc--eeeeEEEEEEEEcCC-CcEEEEEEEeeC
Confidence            7778887776432  788899999999865 699999999987

>3ni8_A PFC0360W protein; heat shock, malaria, ATPase, structural genomics consortium, unknown function; 2.50A {Plasmodium falciparum}

Probab=98.27  E-value=1.1e-05  Score=57.72  Aligned_cols=104  Identities=19%  Similarity=0.207  Sum_probs=64.6

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeE
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCK   83 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (146)
                      .++..++.|+||+++||+++. |... +.+|.++...+.++     .+|..  +.+..|    .+.=++.++++.+ ++.
T Consensus        19 ~~i~~~r~~~ap~e~Vw~A~T-dpe~-l~~W~~g~~~~~d~-----~~GG~--~~~~~G----~~~g~v~ev~p~~-rlv   84 (158)
T 3ni8_A           19 MSFEITEEYYVPPEVLFNAFT-DAYT-LTRLSRGSLAEVDL-----KVGGK--FSLFSG----SILGEFTEITKPH-KIV   84 (158)
T ss_dssp             CCEEEEEEESSCHHHHHHHHH-CHHH-HHHHTTTSCCEECC-----STTCE--EEETTT----TEEEEEEEEETTT-EEE
T ss_pred             ceEEEEEEECCCHHHHHHHhc-CHHH-HHhhcCCCccEEEc-----cCCCE--EEEecC----CEEEEEEEEeCCc-EEE
Confidence            467888999999999999999 9998 78998731222222     22322  223333    2344666777755 555


Q ss_pred             EEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           84 YTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        84 y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      |+---.+....  ..-..++.++|.++|+|.++.+.+--+
T Consensus        85 ~tw~~~~~~~~--~~s~vt~~l~~~~~~~T~ltl~~~g~~  122 (158)
T 3ni8_A           85 EKWKFRDWNEC--DYSTVTVEFISVKENHTKLKLTHNNIP  122 (158)
T ss_dssp             EEEEETTSCSS--CCEEEEEEEEEEETTEEEEEEEEECCC
T ss_pred             EEEEecCCCCC--CcEEEEEEEEecCCCCEEEEEEEEccC
Confidence            65432222211  124678899996557899988876433

>2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.09  E-value=0.00015  Score=50.85  Aligned_cols=102  Identities=9%  Similarity=0.142  Sum_probs=68.5

Q ss_pred             CccEEEEEEEEecCCH-HHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCC
Q 032152            1 MGVMRFEKEVSAAVAP-SRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDN   79 (146)
Q Consensus         1 m~~~~~~~e~~i~apa-~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~   79 (146)
                      |.-.+++.|+.|+||+ ++||+++. +..+ +..|+.+.+.    ..|.     .-.+.....+   ...=++.++|+.+
T Consensus         1 m~k~~i~~e~~i~A~~~~~VW~~IS-tPeg-L~~Wfad~v~----~~g~-----~~~F~w~~~~---~~~~~v~~~~~~~   66 (136)
T 2lio_A            1 MKKEKIHLEYLLNATSKNILWSAIS-TPTG-LEDWFADKVV----SDDK-----TVTFCWGKTE---QRQAGIVAIRAYS   66 (136)
T ss_dssp             CCCEEEEEEEEECTTSCTHHHHGGG-SHHH-HTTTSSSEEE----EETT-----EEEEESSSSS---EEEEEEEEEETTT
T ss_pred             CCCCcEEEEEEecCChHHHHHHHhC-Chhh-hhcccCCCCc----ccCc-----eEEEEeCCCC---cEeEEEEEEcCCC
Confidence            7668999999999999 99999998 9998 7888876443    1232     2223333212   3455777776666


Q ss_pred             CeeEEEEEecCCCCcceeEEEEEEEEEEcCC-CceEEEEEEEEEe
Q 032152           80 FRCKYTVIEGDMLGTILESIVYDVKFEASGN-GGSICKVASEFHT  123 (146)
Q Consensus        80 ~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~-g~s~v~w~~~y~~  123 (146)
                       +++|+-...+     ..++..++++.+.+. +++.++.+ .|..
T Consensus        67 -~i~FrW~~~~-----~~~~~~e~~l~~~~~t~~~~L~vt-dFa~  104 (136)
T 2lio_A           67 -FIRFHWLDDE-----NERDYFEIKMSYNELTGDYVLEIT-DFSE  104 (136)
T ss_dssp             -EEEEEESSSS-----SSSCEEEEEEEECTTTSCEEEEEE-EEEC
T ss_pred             -EEEEEccCCC-----CCceEEEEEEEecCCCCcEEEEEe-cCCC
Confidence             7888874422     234566777777642 36777777 7765

>1zxf_A CALC; SELF-sacrificing resistance protein, structural genomics, PSI, protein structure initiative; NMR {Micromonospora echinospora} SCOP: d.129.3.5 PDB: 2gkc_A* 2gkd_A 2l65_A*

Probab=97.81  E-value=8.5e-05  Score=52.54  Aligned_cols=126  Identities=15%  Similarity=0.151  Sum_probs=72.1

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccce------eeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeC
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAI------KSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDK   77 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v------~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~   77 (146)
                      ..+..++.|+||+++||+++. |  . +.+|++..+      ..+++. ..|  |.. .+...+|...  ..=++.++|+
T Consensus         4 ~~i~~~r~~~Ap~e~Vw~A~T-d--~-l~~W~~p~~~~~~~~~~~~~d-r~G--G~~-~~~~~~G~~~--~~g~v~ev~p   73 (155)
T 1zxf_A            4 PFVRHSVTVKADRKTAFKTFL-E--G-FPEWWPNNFRTTKVGAPLGVD-KKG--GRW-YEIDEQGEEH--TFGLIRKVDE   73 (155)
T ss_dssp             SCEEEEEEESSHHHHHHHHHT-T--C-SSSSSSGGGSTTTTCSSCEEE-TTT--TEE-ECCCTTTSCC--CCEEEEEEET
T ss_pred             ceEEEEEEEeCCHHHHHHHHH-h--h-HHhhcCCCccccCCCceEEEE-CCC--CEE-EEECCCCCeE--eEEEEEEECC
Confidence            357788999999999999998 8  3 556664323      234433 223  333 2222233211  1125667776


Q ss_pred             CCCeeEEEE-EecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe--------------chhhhhHHHHHHHHHhh
Q 032152           78 DNFRCKYTV-IEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT--------------KEKAMGLHKIVEAHLLA  140 (146)
Q Consensus        78 ~~~~~~y~i-~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~--------------~~~~~~~~k~~e~~l~~  140 (146)
                      .+ ++.|+- .+++..+.+-.....|+.++|.++|+|.++.+...-.              ......++..|+++|-+
T Consensus        74 p~-rl~~tw~~~~~~~~~~~~~s~vt~~l~~~~~g~T~ltl~~~~~~~~~~~~~~~~~~~~~~GW~~~l~~L~~~l~~  150 (155)
T 1zxf_A           74 PD-TLVIGWRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEHTHFDRMGTKHAKRVRNGMDKGWPTILQSFQDKIDE  150 (155)
T ss_dssp             TT-EEEEECCCSSSSSCCCSSCCCEEEEEEEETTTEEEEEEEECSSTTSCHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             CC-EEEEEEecCCCCCCCCCCcEEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            65 666773 2321100011224578999998776699888866422              12356777778777754

>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}

Probab=97.26  E-value=0.012  Score=45.22  Aligned_cols=136  Identities=15%  Similarity=0.122  Sum_probs=84.2

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeecC-C--cc-eeeEEEEEEe-eC
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFADG-G--NF-KYAKHRIDEL-DK   77 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~g-~--~~-~~~kErl~~~-D~   77 (146)
                      ..+..+..+++||++||+++. |... .+.|.+. ++++++++- ++. -.|-.+..... +  +. ..+--|...- ++
T Consensus        88 l~~k~~~~v~~~~~~v~~~L~-D~~~-R~~WD~~-~~~~~vle~id~~-~ivY~~~~p~~~~~v~~RDFV~lr~~r~~~~  163 (258)
T 3fo5_A           88 LSFHMEMVVHVDAAQAFLLLS-DLRQ-RPEWDKH-YRSVELVQQVDED-DAIYHVTSPALGGHTKPQDFVILASRRKPCD  163 (258)
T ss_dssp             EEEEEEEEESSCHHHHHHHHH-CGGG-GGGTCTT-CCEEEEEEEEETT-EEEEEEEECCCTTCSSCEEEEEEEEEECCSS
T ss_pred             eEEEEEEEEeCCHHHHHHHHh-Cchh-HhHhhhh-ccEEEEEEEcCCC-eEEEEEecCCccCCCCCCEEEEEEEEEeccC
Confidence            346677889999999999998 9998 8999996 888888753 221 12223333221 1  12 2333332211 22


Q ss_pred             CC--CeeEEEEEecCC-CCc----ceeEEEEEEEEEEcCCCceEEEEEEEEEe-------------chhhhhHHHHHHHH
Q 032152           78 DN--FRCKYTVIEGDM-LGT----ILESIVYDVKFEASGNGGSICKVASEFHT-------------KEKAMGLHKIVEAH  137 (146)
Q Consensus        78 ~~--~~~~y~i~eg~~-~~~----~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------------~~~~~~~~k~~e~~  137 (146)
                      ..  ..+...-++-+. ++.    ....+.+.+.+.|.++++|.|.+...-+|             -..+...++.+.+|
T Consensus       164 ~G~~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dpG~lP~~~~n~~g~s~~~~~t~~~~~~f  243 (258)
T 3fo5_A          164 NGDPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATPGVLNYVTTNVAGLSSEFYTTFKACEQF  243 (258)
T ss_dssp             TTCCEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCGGGHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             CCCEEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCCCCCCceEEeccccchHHHHHHHHHHHH
Confidence            22  233333333322 211    12456688999999888999999888788             23445667899999


Q ss_pred             HhhCCC
Q 032152          138 LLANPD  143 (146)
Q Consensus       138 l~~~~~  143 (146)
                      |..+.|
T Consensus       244 l~~~~~  249 (258)
T 3fo5_A          244 LLDNRN  249 (258)
T ss_dssp             HHHTC-
T ss_pred             HHhccc
Confidence            998875

>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa} SCOP: d.129.3.7

Probab=97.05  E-value=0.0096  Score=42.62  Aligned_cols=75  Identities=16%  Similarity=0.234  Sum_probs=54.2

Q ss_pred             EEEEEEEecCC---------HHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEe
Q 032152            5 RFEKEVSAAVA---------PSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDEL   75 (146)
Q Consensus         5 ~~~~e~~i~ap---------a~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~   75 (146)
                      +++..+.||-|         .+++|+-+.....+ -..++|+ +.+|++++.++ ..-.|.++|+++    .++|+++ +
T Consensus         2 ~f~htvpIN~p~~p~~p~LTr~QlW~GL~~kar~-p~~Fvp~-i~~c~Vlse~~-~~~~R~l~fg~~----~i~e~vt-l   73 (157)
T 2ffs_A            2 QFEHLVQVNDRTLVDLPVLDRLQLWEGLVCRARE-PQYFVVG-LERFEILVDDG-DRLHRRLYLPGL----VVEDEVV-L   73 (157)
T ss_dssp             CEEEEEECCCCCC---CCCCHHHHHHHHHHHHHC-GGGTCTT-CCEEEEEEECS-SEEEEEEEETTE----EEEEEEE-E
T ss_pred             ceeEEEecCCCCCCCCCccCHHHHHHHHHHHhcC-hhhcccc-cCeEEEEecCC-CeEEEEEEECCC----ccceEEE-E
Confidence            45677788775         37999988744454 5577885 99999986542 267799999877    6889976 5


Q ss_pred             eCCCCeeEEEEEe
Q 032152           76 DKDNFRCKYTVIE   88 (146)
Q Consensus        76 D~~~~~~~y~i~e   88 (146)
                      .+.. ++.|.+-.
T Consensus        74 ~~~~-~v~f~~~~   85 (157)
T 2ffs_A           74 KAPD-SAHYSIKP   85 (157)
T ss_dssp             ETTT-EEEEEECC
T ss_pred             cCCc-EEEEEccc
Confidence            4544 67788855

>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}

Probab=96.45  E-value=0.11  Score=38.17  Aligned_cols=135  Identities=11%  Similarity=0.110  Sum_probs=75.6

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeec--CCc--c-eeeEEEEEEeeCC
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFAD--GGN--F-KYAKHRIDELDKD   78 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~--g~~--~-~~~kErl~~~D~~   78 (146)
                      .+..+..+++||++||+++..|... .+.|-+. ++++++++- ++.. .|-......  ..+  . ..+--|....++.
T Consensus        56 ~~k~~~~v~~~~~~v~~~l~~d~~~-r~~Wd~~-~~~~~vle~~~~~t-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~  132 (221)
T 3p0l_A           56 VFRLEVVVDQPMERLYEELVERMEA-MGEWNPN-VKEIKVLQKIGKDT-FITHELAAEAAGNLVGPRDFVSVRCAKRRGS  132 (221)
T ss_dssp             EEEEEEEESSCHHHHHHHHTTTGGG-TTTSCTT-CSEEEEEEECSSSE-EEEEEEECC---CCSCCEEEEEEEEEEECSS
T ss_pred             EEEEEEEEcCCHHHHHHHHHhccch-hhhcCcc-hheEEEEEecCCCe-EEEEEeeccccCCccCCceEEEEEEEEEcCC
Confidence            3566678899999999987328887 8999985 888888764 2221 222222221  111  1 2222222222332


Q ss_pred             CCeeEEEEEecCCCC---cce--eEEEEEEEEEEcCCC--ceEEEEEEEEEe-------------chhhhhHHHHHHHHH
Q 032152           79 NFRCKYTVIEGDMLG---TIL--ESIVYDVKFEASGNG--GSICKVASEFHT-------------KEKAMGLHKIVEAHL  138 (146)
Q Consensus        79 ~~~~~y~i~eg~~~~---~~~--~~y~~t~~v~p~~~g--~s~v~w~~~y~~-------------~~~~~~~~k~~e~~l  138 (146)
                      ...+...-++-+..|   ..+  ..+.+.+.+.|.++|  +|.++|....++             .......++.|.+++
T Consensus       133 ~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lr~~~  212 (221)
T 3p0l_A          133 TCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRKRL  212 (221)
T ss_dssp             CEEECCEECCCTTSCCCTTSEECEECSCEEEEEEETTEEEEEEEEEEECEECCSSCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCCCCCcEEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222211112222111   112  345567889998776  799999999998             344456677777777


Q ss_pred             hhCC
Q 032152          139 LANP  142 (146)
Q Consensus       139 ~~~~  142 (146)
                      ...+
T Consensus       213 ~~~~  216 (221)
T 3p0l_A          213 ESHP  216 (221)
T ss_dssp             C---
T ss_pred             hhch
Confidence            6433

>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2

Probab=96.40  E-value=0.18  Score=37.18  Aligned_cols=132  Identities=10%  Similarity=0.009  Sum_probs=74.0

Q ss_pred             EEEEEEecCCHHHHH-HHhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeec--CCc--c-eeeEEEEEEeeCC
Q 032152            6 FEKEVSAAVAPSRMF-KAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFAD--GGN--F-KYAKHRIDELDKD   78 (146)
Q Consensus         6 ~~~e~~i~apa~~vw-~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~--g~~--~-~~~kErl~~~D~~   78 (146)
                      +..+..+++||++|+ .++. |... .++|-+. +.++++++- ++. -.|-.....+  ..+  . ..+--|-...++.
T Consensus        68 ~k~~~~v~~~~~~v~~~~~~-d~~~-r~~Wd~~-~~~~~vle~~~~~-t~I~~~~~~p~~~~~~~~RDfv~~r~~~~~~~  143 (229)
T 1em2_A           68 FILKTFLPCPAELVYQEVIL-QPER-MVLWNKT-VTACQILQRVEDN-TLISYDVSAGAAGGVVSPRDFVNVRRIERRRD  143 (229)
T ss_dssp             EEEEEEESSCHHHHHHHTTT-CHHH-HTTTCTT-EEEEEEEEEETTT-EEEEEEEECCBTTTTBCCEEEEEEEEEEECSS
T ss_pred             EEEEEEecCCHHHHHHHHHh-Cccc-hhhcccc-cceEEEEEecCCC-eEEEEEEecCcCCCCcCCCeeEEEEEEEEcCC
Confidence            345667899999999 7777 9988 8999986 888888764 221 1232222222  121  1 2232232223333


Q ss_pred             CCeeEEEEEecCCCC---c--ceeEEEEEEEEEEcC--CCceEEEEEEEEEe-------------chhhhhHHHHHHHHH
Q 032152           79 NFRCKYTVIEGDMLG---T--ILESIVYDVKFEASG--NGGSICKVASEFHT-------------KEKAMGLHKIVEAHL  138 (146)
Q Consensus        79 ~~~~~y~i~eg~~~~---~--~~~~y~~t~~v~p~~--~g~s~v~w~~~y~~-------------~~~~~~~~k~~e~~l  138 (146)
                      ...+...-++-+..|   .  ....+.+.+.+.|.+  +++|.++|....++             .......++.|.+++
T Consensus       144 ~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~l~n~~~~~~~~~~~~~Lr~~~  223 (229)
T 1em2_A          144 RYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGRLPRYLIHQSLAATMFEFAFHLRQRI  223 (229)
T ss_dssp             EEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecccCCCCCCCCCCEeeeecccEEEEEecCCCCCcEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322222222322222   1  123345678888854  35799999998888             233345566666666


Q ss_pred             hhC
Q 032152          139 LAN  141 (146)
Q Consensus       139 ~~~  141 (146)
                      .+.
T Consensus       224 ~~~  226 (229)
T 1em2_A          224 SEL  226 (229)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            543

>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2

Probab=95.47  E-value=0.5  Score=34.72  Aligned_cols=115  Identities=4%  Similarity=-0.138  Sum_probs=65.9

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeec--C--Ccc-eeeEEEEEEeeCC
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFAD--G--GNF-KYAKHRIDELDKD   78 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~--g--~~~-~~~kErl~~~D~~   78 (146)
                      .+..+.+|++|++++++.+. |... -+.|-+. +.++++++. ++. -.|-...+..  +  ... ..+--|-...++.
T Consensus        68 ~~k~~~~v~~~~~~v~~~l~-d~~~-r~~Wd~~-~~~~~vle~id~~-~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~  143 (224)
T 1jss_A           68 LYKAQGVMDDVVNNVIDHIR-PGPW-RLDWDRL-MTSLDVLEHFEEN-CCVMRYTTAGQLLNIISPREFVDFSYTVGYEE  143 (224)
T ss_dssp             EEEEEEEESSCHHHHHHHHS-SSTT-HHHHCSS-EEEEEEEEECSTT-EEEEEEEECCBTTTTBCCEEEEEEEEEEEETT
T ss_pred             EEEEEEEEeCCHHHHHHHHh-Cccc-ccccccc-eeeEEEEEEcCCC-eEEEEEEcccccCCCCCCCeEEEEEEEEEcCC
Confidence            35667788999999999998 9877 7999986 888888764 322 1232222222  1  111 2222222222333


Q ss_pred             CCeeEEEEEecCC-CCcc--eeEEEEEEEEEEcCCC--ceEEEEEEEEEe
Q 032152           79 NFRCKYTVIEGDM-LGTI--LESIVYDVKFEASGNG--GSICKVASEFHT  123 (146)
Q Consensus        79 ~~~~~y~i~eg~~-~~~~--~~~y~~t~~v~p~~~g--~s~v~w~~~y~~  123 (146)
                      +..+...-++-+. .+..  ...+.+.+.+.|.+++  +|.++|.+.-++
T Consensus       144 ~~vi~~~Sv~hp~~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp  193 (224)
T 1jss_A          144 GLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDL  193 (224)
T ss_dssp             EEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEEC
T ss_pred             eEEEEEeeeecCCCCCCCEEEEecccEEEEEEcCCCCCceEEEEEEEeCC
Confidence            3222111122111 1111  2345567889997653  799999999888

>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*

Probab=95.33  E-value=0.41  Score=35.88  Aligned_cols=50  Identities=8%  Similarity=0.116  Sum_probs=36.6

Q ss_pred             EEEEe-cCCHHHHHHHhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeec
Q 032152            8 KEVSA-AVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFAD   61 (146)
Q Consensus         8 ~e~~i-~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~   61 (146)
                      ....+ +++++++++++. |... .++|-|. ++++++++- ++ -+.|..+.+..
T Consensus        77 ~~~~~~~~~~~~v~~~l~-d~~~-r~~Wd~~-~~~~~vle~i~~-~~~i~y~~~~~  128 (255)
T 2e3n_A           77 ATHAVKGVTGHEVCNYFW-NVDV-RNDWETT-IENFHVVETLAD-NAIIIYQTHKR  128 (255)
T ss_dssp             EEEEEETCCHHHHHHHHH-CGGG-HHHHCCS-EEEEEEEEEEET-TEEEEEEEECC
T ss_pred             EEEEEcCCCHHHHHHHHh-Ccch-Hhhhhhh-cceeEEEEEcCC-CCEEEEEEeec
Confidence            34455 499999999998 9998 9999985 888888865 32 13455555543

>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}

Probab=95.21  E-value=0.62  Score=34.22  Aligned_cols=133  Identities=8%  Similarity=-0.075  Sum_probs=71.9

Q ss_pred             EEEEEEEecCCHHHHHHHh--hhccccccccccccceeeEEEEcCCCCCCcEEEEEeec--CCc---ceeeEEEEEEeeC
Q 032152            5 RFEKEVSAAVAPSRMFKAF--FLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD--GGN---FKYAKHRIDELDK   77 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~--~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~--g~~---~~~~kErl~~~D~   77 (146)
                      .+..+..+++|+++|++++  . |... .++|-+. +.++++++--.+...|-.....+  +.+   -..+--|-...++
T Consensus        68 ~~k~~~~v~~~~~~v~~~l~~~-d~~~-r~~Wd~~-~~~~~vle~i~~~~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~  144 (231)
T 2r55_A           68 LYRGEGIVYGTLEEVWDCVKPA-VGGL-RVKWDEN-VTGFEIIQSITDTLCVSRTSTPSAAMKLISPRDFVDLVLVKRYE  144 (231)
T ss_dssp             EEEEEEEESSCHHHHHHHHCC---CCS-HHHHCTT-CSEEEEEEECSSSEEEEEEECCCBTTTTBCCEEEEEEEEEEECT
T ss_pred             EEEEEEEECCCHHHHHHHHHhh-Ccch-hhhhccc-cceeEEEEEcCCCEEEEEEEeccccCCccCCCeEEEEEEEEEcC
Confidence            3566778899999999999  7 8887 8999985 77888776422112232111111  111   1223333233333


Q ss_pred             CC-CeeEEEEEecCCCC---cce--eEEEEEEEEEEcC--CCceEEEEEEEEEe-------------chhhhhHHHHHHH
Q 032152           78 DN-FRCKYTVIEGDMLG---TIL--ESIVYDVKFEASG--NGGSICKVASEFHT-------------KEKAMGLHKIVEA  136 (146)
Q Consensus        78 ~~-~~~~y~i~eg~~~~---~~~--~~y~~t~~v~p~~--~g~s~v~w~~~y~~-------------~~~~~~~~k~~e~  136 (146)
                      .+ ..+...-++-+..|   ..+  ..+.+-+.+.|.+  +++|.++|....++             ...+...++.|.+
T Consensus       145 ~g~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lr~  224 (231)
T 2r55_A          145 DGTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGYLPQNVVDSFFPRSMTRFYANLQK  224 (231)
T ss_dssp             TSCEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCCccHHHHHHHHhHhHHHHHHHHHH
Confidence            33 22222223322221   112  2334567788854  46899999999988             2233455566666


Q ss_pred             HHhh
Q 032152          137 HLLA  140 (146)
Q Consensus       137 ~l~~  140 (146)
                      ++.+
T Consensus       225 ~~~~  228 (231)
T 2r55_A          225 AVKQ  228 (231)
T ss_dssp             HHHG
T ss_pred             HHHH
Confidence            6544

>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2

Probab=90.59  E-value=4.1  Score=30.22  Aligned_cols=112  Identities=13%  Similarity=0.042  Sum_probs=66.0

Q ss_pred             EEEEEEEecCCHHHHHH-HhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeecCCc--c-eeeEEEEEE--eeC
Q 032152            5 RFEKEVSAAVAPSRMFK-AFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFADGGN--F-KYAKHRIDE--LDK   77 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~-~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~g~~--~-~~~kErl~~--~D~   77 (146)
                      .+..+.+|++++++++. ++. |    .++|-|. +.++++++- ++. -.|-...+..-.+  . ..+--|-..  +++
T Consensus        76 ~~K~~~~v~~~~~~v~~~ll~-d----r~~Wd~~-~~~~~vle~id~~-~~I~y~~~~~p~p~~~RDfv~~r~~r~~~~~  148 (237)
T 2pso_A           76 LWKASVEVEAPPSVVLNRVLR-E----RHLWDED-FVQWKVVETLDRQ-TEIYQYVLNSMAPHPSRDFVVLRTWKTDLPK  148 (237)
T ss_dssp             EEEEEEEESSCHHHHHHHHHH-C----GGGTCTT-BCCCEEEEEEETT-EEEEEEEECCSSSCCCEEEEEEEEEESCCGG
T ss_pred             EEEEEEEEcCChHHHHHHHHh-h----hhhHHhh-hceEEEEEEcCCC-cEEEEEEecCCCCcCCeEEEEEEEEEEECCC
Confidence            46778899999999875 554 6    4799985 777777764 221 1233344432211  1 233233222  234


Q ss_pred             CCCeeEEEEEecCCCC-c---ceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           78 DNFRCKYTVIEGDMLG-T---ILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        78 ~~~~~~y~i~eg~~~~-~---~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      ....+..+-++-+..| .   ....+.+.+.+.|.++++|.++|....+|
T Consensus       149 g~~vi~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~Dp  198 (237)
T 2pso_A          149 GMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHICRIDL  198 (237)
T ss_dssp             GCEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEEEEECC
T ss_pred             CEEEEEEEcccCCCCCCCCcEEEEEeccEEEEEECCCCCEEEEEEEEeCC
Confidence            4444444434332111 1   13456788899998888999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	146
d1fm4a_	159	d.129.3.1 (A:) Major tree pollen allergen {Europea	1e-53
d1xdfa1	157	d.129.3.1 (A:1-157) Plant pathogenesis-related pro	5e-52
d1e09a_	159	d.129.3.1 (A:) Major tree pollen allergen {Sweet c	1e-51
d2bk0a1	153	d.129.3.1 (A:2-154) Major allergen api g 1 {Celery	6e-50
d1icxa_	155	d.129.3.1 (A:) Plant pathogenesis-related protein	3e-49
d1txca1	147	d.129.3.1 (A:1-147) Plant pathogenesis-related pro	2e-40
d1vjha_	120	d.129.3.1 (A:) Hypothetical protein At1G24000 {Tha	5e-13

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

 Score =  164 bits (416), Expect = 1e-53
 Identities = 65/158 (41%), Positives = 97/158 (61%), Gaps = 14/158 (8%)

Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           GV  +E E ++ +  +RMFKAF L+    +PK+ PQAI SVE ++G+GG G+IK  NF +
Sbjct: 1   GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPE 60

Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
           G  FKY K R+DE+D  NF+  Y+VIEG  +G  LE I  ++K  A+ +GG + K+++++
Sbjct: 61  GFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKY 120

Query: 122 HT--------------KEKAMGLHKIVEAHLLANPDLY 145
           HT              KE    L + VE++LLA+ D Y
Sbjct: 121 HTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 158

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 157

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score =  160 bits (406), Expect = 5e-52
 Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 15/156 (9%)

Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           GV  FE E ++ +AP+R++KA   +A   +PK   +AI+S+E ++G+GG G+IK     +
Sbjct: 1   GVFTFEDESTSTIAPARLYKALVKDADAIIPK-AVEAIQSIETVEGNGGPGTIKKLTLIE 59

Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
           GG  KY  H+I+ +D+ N R  Y+++ G  L   +E I ++ K     NGGSI KV  + 
Sbjct: 60  GGETKYVLHKIEAVDEANLRYNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKI 119

Query: 122 HT--------------KEKAMGLHKIVEAHLLANPD 143
            T              K +     K +E +L A+P+
Sbjct: 120 ETKGDAQPNEEEGKAAKARGDAFFKAIENYLSAHPE 155

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Length = 159

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

 Score =  159 bits (404), Expect = 1e-51
 Identities = 74/158 (46%), Positives = 98/158 (62%), Gaps = 14/158 (8%)

Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           GV  +E E ++ + P R+FKAF L+A N +PK+ PQAIK  EIL+GDGG G+IK   F +
Sbjct: 1   GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGE 60

Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
           G  + Y KH+ID +DK+N+   YT+IEGD LG  LE I Y+ K  AS +GGSI K  S +
Sbjct: 61  GSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHY 120

Query: 122 HT--------------KEKAMGLHKIVEAHLLANPDLY 145
           HT              KEKA  L K++E +L  +PD Y
Sbjct: 121 HTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAY 158

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} Length = 153

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

 Score =  155 bits (392), Expect = 6e-50
 Identities = 57/154 (37%), Positives = 84/154 (54%), Gaps = 15/154 (9%)

Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           GV     E++++V+  ++F+ F ++    LPK  P A KSVEI +GDGG G++KI    D
Sbjct: 1   GVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLPD 59

Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
           GG       RID ++K+     Y+VI+GD+L   +ESI   V    + +GGSICK  + F
Sbjct: 60  GGPITTMTLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIF 119

Query: 122 HT--------------KEKAMGLHKIVEAHLLAN 141
           HT               E+   L K +EA+L+AN
Sbjct: 120 HTKGDAVVPEENIKYANEQNTALFKALEAYLIAN 153

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 155

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

 Score =  153 bits (387), Expect = 3e-49
 Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 14/155 (9%)

Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           G+  FE E S+ VAP++++KA   ++   +PK++   I+SVEI++G+GG G+IK      
Sbjct: 1   GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEP-IQSVEIVEGNGGPGTIKKIIAIH 59

Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
            G+  +  H++D +D+ N    Y++I G+ L   LE I Y+ K     +GGSI K+  +F
Sbjct: 60  DGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKF 119

Query: 122 HT-------------KEKAMGLHKIVEAHLLANPD 143
           HT             K K +GL K +E ++LA+PD
Sbjct: 120 HTKGDVLSETVRDQAKFKGLGLFKAIEGYVLAHPD 154

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} Length = 147

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

 Score =  130 bits (329), Expect = 2e-40
 Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 15/148 (10%)

Query: 2   GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD 61
           GV  F  E S++VAP++++KA   ++   + + +   I+S+E+++G+GG G+IK     +
Sbjct: 1   GVFVFRDETSSSVAPAKLYKALTKDSDT-IAQKIDGPIQSIELVEGNGGVGTIKKITANE 59

Query: 62  GGNFKYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF 121
           G    +   ++D +D+ N    Y+++ G  L   LE + ++ K  A   GGSI KV  +F
Sbjct: 60  GDKTSFVLQKVDAIDEANLGYDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKF 119

Query: 122 HT--------------KEKAMGLHKIVE 135
           HT                K  G  K +E
Sbjct: 120 HTKGDAPLSDAVRDDALAKGAGFFKAIE 147

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 120

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 59.4 bits (144), Expect = 5e-13
 Identities = 11/86 (12%), Positives = 27/86 (31%), Gaps = 13/86 (15%)

Query: 66  KYAKHRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNG-GSICKVASEFHT- 123
           K  K  I+ +D         +   ++     +++   +     G G GS       F   
Sbjct: 34  KNGKTEIEAVDLVKKTMTIQMSGSEIQ-KYFKTLKGSIAVTPIGVGDGSHVVWTFHFEKV 92

Query: 124 ----------KEKAMGLHKIVEAHLL 139
                      ++++   K ++  +L
Sbjct: 93  HKDIDDPHSIIDESVKYFKKLDEAIL 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	146
d1fm4a_	159	Major tree pollen allergen {European white birch (	100.0
d1e09a_	159	Major tree pollen allergen {Sweet cherry (Prunus a	100.0
d1xdfa1	157	Plant pathogenesis-related protein PR10 {Yellow lu	100.0
d1icxa_	155	Plant pathogenesis-related protein PR10 {Yellow lu	100.0
d2bk0a1	153	Major allergen api g 1 {Celery (Apium graveolens)	100.0
d1txca1	147	Plant pathogenesis-related protein PR10 {Jicama (P	100.0
d3cnwa1	138	Uncharacterized protein XoxI {Bacillus cereus [Tax	99.95
d1vjha_	120	Hypothetical protein At1G24000 {Thale cress (Arabi	99.93
d2d4ra1	146	Hypothetical protein TTHA0849 {Thermus thermophilu	99.72
d2b79a1	137	Hypothetical protein SMU440 {Streptococcus mutans	99.63
d2rera1	155	Multifunctional enzyme TcmN, cyclase/aromatase dom	99.63
d2ns9a1	147	Hypothetical protein APE2225 {Aeropyrum pernix [Ta	99.49
d2pcsa1	147	Hypothetical protein GKP20 {Geobacillus kaustophil	99.33
d1t17a_	148	Hypothetical protein CC1736 {Caulobacter crescentu	99.32
d2qpva1	133	Uncharacterized protein Atu1531 {Agrobacterium tum	99.23
d1xuva_	163	Hypothetical protein MM0500 {Methanosarcina mazei	99.16
d2il5a1	164	Hypothetical protein SA2116 {Staphylococcus aureus	98.97
d1z94a1	143	Hypothetical protein CV1439 {Chromobacterium viola	98.86
d1xfsa_	165	Hypothetical protein NE0264 {Nitrosomonas europaea	98.77
d3elia1	143	Uncharacterized protein SPO3351 {Silicibacter pome	98.55
d2nn5a1	160	Hypothetical protein EF2215 {Enterococcus faecalis	98.42
d1xn5a_	138	Hypothetical protein BH1534 {Bacillus halodurans [	98.32
d1zxfa1	155	Calicheamicin gene cluster protein CalC {Micromono	98.19
d1xn6a_	143	Hypothetical protein BC4709 {Bacillus cereus [TaxI	98.16
d1x53a1	132	Activator of 90 kda heat shock protein ATPase homo	98.11
d2k5ga1	183	Uncharacterized protein BPP1335 {Bordetella parape	98.07
d1jssa_	199	Cholesterol-regulated Start protein 4 (Stard4). {M	97.48
d2ffsa1	151	Hypothetical protein PA1206 {Pseudomonas aeruginos	97.03
d1ln1a_	203	Phosphatidylcholine transfer protein {Human (Homo	96.87
d1em2a_	214	Lipid transport domain of Mln64 {Human (Homo sapie	96.51

>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]

Probab=100.00  E-value=1e-46  Score=273.76  Aligned_cols=145  Identities=45%  Similarity=0.804  Sum_probs=138.2

Q ss_pred             ccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCe
Q 032152            2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFR   81 (146)
Q Consensus         2 ~~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~   81 (146)
                      |+++++.|+++++||+++|+++.+|+++++|+++|+++++|++++|||++||||.|+|..|++..++||||+.+|+++|+
T Consensus         1 Gv~~~e~E~~~~v~a~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~~~~Kerve~iD~~~~~   80 (159)
T d1fm4a_           1 GVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFK   80 (159)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTCCEEEEEECSSSTTCEEEEECCTTSSSSEEEEEEEEEETTTTE
T ss_pred             CceEEEEEeeccCCHHHHHHHHHhCcccccccccCcceEEEEEECCCCCCCCEEEEEecCCCCceEEEEEEEEEcccccE
Confidence            68999999999999999999865599998899999999999999999999999999999998889999999999999999


Q ss_pred             eEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe--------------chhhhhHHHHHHHHHhhCCCCCC
Q 032152           82 CKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT--------------KEKAMGLHKIVEAHLLANPDLYA  146 (146)
Q Consensus        82 ~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~--------------~~~~~~~~k~~e~~l~~~~~~~~  146 (146)
                      ++|+++|||.+.++|++|+++++|+|.++|+|+++|+++|++              ++.+.+++|++|+||++|||+||
T Consensus        81 ~~y~viEGd~l~~~~~s~~~~~k~~~~~~gg~v~kwt~eYe~~~~~~~~~e~~k~~ke~~~~~~K~iE~YLlanp~~y~  159 (159)
T d1fm4a_          81 YNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN  159 (159)
T ss_dssp             EEEEEEEBTTBTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCTTTTHHHHHHHHHHHHHHHHHHHHCTTTTC
T ss_pred             EEEEEEeccccccceEEEEEEEEEecCCCCceEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhChhhcC
Confidence            999999999877789999999999999999999999999998              57789999999999999999998

>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

Probab=100.00  E-value=2.3e-46  Score=271.89  Aligned_cols=145  Identities=51%  Similarity=0.902  Sum_probs=138.2

Q ss_pred             ccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCe
Q 032152            2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFR   81 (146)
Q Consensus         2 ~~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~   81 (146)
                      |+++++.|+++++||+++|+++.+|+++++|+++|+.++++++++|||++||||.|+|..|++..++||||+.+|+++|+
T Consensus         1 gv~~~~~E~~~~vpa~k~~k~~~~d~~~l~pk~~p~~i~~ie~~eGdg~~GsIr~~~~~~~~~~~~~KErie~iD~~~~~   80 (159)
T d1e09a_           1 GVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYS   80 (159)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHCTTTEEEEEEEESSSSTTCEEEEEECCSSSCEEEEEEEEEEETTTTE
T ss_pred             CceEEEEEEeecCCHHHHHHHHhcChhhcCcccCCcceeEEEEEcCCCCcCcEEEEEEcCCCCcEEEEEEEEEEcccccE
Confidence            68999999999999999999865599998899999999999999999999999999999999889999999999999999


Q ss_pred             eEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe--------------chhhhhHHHHHHHHHhhCCCCCC
Q 032152           82 CKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT--------------KEKAMGLHKIVEAHLLANPDLYA  146 (146)
Q Consensus        82 ~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~--------------~~~~~~~~k~~e~~l~~~~~~~~  146 (146)
                      ++|+++||+++.+.|++|..++++.|.++|||+++|+++|++              ++++..++|+||+||++|||+||
T Consensus        81 ~~y~viEGd~l~~~~~s~~~~~~~~~~~~~g~vvkwt~eYe~~~~~~~~~e~~~~~~e~~~~~~K~iEayLlanp~~y~  159 (159)
T d1e09a_          81 YSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAYN  159 (159)
T ss_dssp             EEEEECCCTTTGGGEEEEEEEEEECCCTTSSEEEEEEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHCTTSCC
T ss_pred             EEEEEEecccccccEEEEEEEEEEccCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhChhhcC
Confidence            999999999887779999999999999888999999999998              47889999999999999999998

>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=100.00  E-value=2.6e-45  Score=265.47  Aligned_cols=143  Identities=37%  Similarity=0.694  Sum_probs=134.8

Q ss_pred             ccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCe
Q 032152            2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFR   81 (146)
Q Consensus         2 ~~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~   81 (146)
                      |+++++.|+++++||+++|+++.+|++.|+|++ |+.|++++++||||++||||.|+|..|++..++|||++.+|+++++
T Consensus         1 gv~t~~~E~~~~v~a~k~fka~~~d~~~l~pk~-p~~i~s~e~~eGdG~~GsIr~~~~~~g~~~~~~Kerie~vD~e~~~   79 (157)
T d1xdfa1           1 GVFTFEDESTSTIAPARLYKALVKDADAIIPKA-VEAIQSIETVEGNGGPGTIKKLTLIEGGETKYVLHKIEAVDEANLR   79 (157)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHHHSHHHHHHHH-CTTEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGTE
T ss_pred             CceEEEEEEeccCCHHHHHHHHhhchhhccccc-hhheecceeecCCCCCCcEEEEEEcCCCccEEEEEEEEEEechhcE
Confidence            689999999999999999998766999988887 6689999999999999999999999999889999999999999999


Q ss_pred             eEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe--------------chhhhhHHHHHHHHHhhCCCCCC
Q 032152           82 CKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT--------------KEKAMGLHKIVEAHLLANPDLYA  146 (146)
Q Consensus        82 ~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~--------------~~~~~~~~k~~e~~l~~~~~~~~  146 (146)
                      ++|+++||+.+.+.|++|+.+++++|.++|||+++|+++|++              ++.+..++|++|+||++||| ||
T Consensus        80 ~~y~viEGd~l~~~~~s~~~~~k~~~~~~ggsv~k~t~eYe~~~~~~~~~e~ik~~~e~~~~~~K~iEaYLlanpd-y~  157 (157)
T d1xdfa1          80 YNYSIVGGVGLPDTIEKISFETKLVEGANGGSIGKVTIKIETKGDAQPNEEEGKAAKARGDAFFKAIENYLSAHPE-YN  157 (157)
T ss_dssp             EEEEEESSTTSCTTEEEEEEEEEEEECTTSSEEEEEEEEEEESSSSCCCHHHHHHHHHHHHTTTHHHHHHHHTSGG-GC
T ss_pred             EEEEEEecccccccEEEEEEEEEEEcCCCCceEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC
Confidence            999999999887789999999999999999999999999998              46678899999999999999 97

>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Yellow lupine (Lupinus luteus) [TaxId: 3873]

Probab=100.00  E-value=1.3e-43  Score=256.05  Aligned_cols=142  Identities=39%  Similarity=0.708  Sum_probs=135.2

Q ss_pred             ccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCe
Q 032152            2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFR   81 (146)
Q Consensus         2 ~~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~   81 (146)
                      |+.+++.|+++++||+++|+++.+|+++|+|+++|+ ++++++++|||++||||.|+|..|++..++|||++++|+++++
T Consensus         1 Gv~t~~~E~~~~v~a~klfka~~~d~~~l~pk~~~~-i~s~e~~eGdGg~GsIk~~~~~~~~~~~~~Kerie~iD~en~~   79 (155)
T d1icxa_           1 GIFAFENEQSSTVAPAKLYKALTKDSDEIVPKVIEP-IQSVEIVEGNGGPGTIKKIIAIHDGHTSFVLHKLDAIDEANLT   79 (155)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTTHHHHHHHHSTT-EEEEEEEESSSSTTCEEEEEEESSSSEEEEEEEEEEEEGGGTE
T ss_pred             CceEEEEeEEecCCHHHHhhhheeccchhchhhhhh-eeeeeEecCCCccceEEEEEeccCCceEEEEEEEEEEcccccE
Confidence            689999999999999999999777999988999986 9999999999999999999999999999999999999999999


Q ss_pred             eEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe-------------chhhhhHHHHHHHHHhhCCCC
Q 032152           82 CKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT-------------KEKAMGLHKIVEAHLLANPDL  144 (146)
Q Consensus        82 ~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------------~~~~~~~~k~~e~~l~~~~~~  144 (146)
                      ++|+++||+++.+.|++|+.++++.|.++|||+++|+++|++             ++.+.+++|++|+||++|||+
T Consensus        80 ~~y~viEGd~l~~~~~~~~~~~k~~~~~~~g~i~k~t~eYe~~g~~~~e~~~~~~ke~~~~~fK~iE~YLlanPd~  155 (155)
T d1icxa_          80 YNYSIIGGEGLDESLEKISYESKILPGPDGGSIGKINVKFHTKGDVLSETVRDQAKFKGLGLFKAIEGYVLAHPDY  155 (155)
T ss_dssp             EEEEEEEETTSCTTEEEEEEEEEEEECGGGCEEEEEEEEEEESSSSCCHHHHTTHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             EEEEEEecccccccEEEEEEEEEEecCCCCCeEEEEEEEEEECCCCCChhhHHHHHHHHHHHHHHHHHHHhhCcCC
Confidence            999999999887789999999999999999999999999999             678899999999999999984

>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major allergen api g 1
species: Celery (Apium graveolens) [TaxId: 4045]

Probab=100.00  E-value=9e-43  Score=251.34  Aligned_cols=139  Identities=41%  Similarity=0.712  Sum_probs=131.5

Q ss_pred             ccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCe
Q 032152            2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFR   81 (146)
Q Consensus         2 ~~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~   81 (146)
                      |+++++.|+++++||+++|+++.+|+++++|+++|+++++|++ +|||++||||.|+|..|++...+|||++++|+++++
T Consensus         1 gv~t~e~E~~~~v~a~k~~ka~~~d~~~l~Pk~~P~~i~svev-eGdG~~GsIr~~~~~~~~~~~~~Kerve~iD~~~~~   79 (153)
T d2bk0a1           1 GVQTHVLELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDGGPGTLKIITLPDGGPITTMTLRIDGVNKEALT   79 (153)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHTTSHHHHHHHHCGGGCSEEEE-ESSSSTTCEEEEECCTTSSCCEEEEEEEEEETTTTE
T ss_pred             CceEEEEEEeccCCHHHHHHHHhhcccccccccccceeeEEEE-ECCCCCCeEEEEEEecCccceeeEEEEEEEecCccE
Confidence            6899999999999999999998669999889999999999995 899999999999999999889999999999999999


Q ss_pred             eEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe--------------chhhhhHHHHHHHHHhhC
Q 032152           82 CKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT--------------KEKAMGLHKIVEAHLLAN  141 (146)
Q Consensus        82 ~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~--------------~~~~~~~~k~~e~~l~~~  141 (146)
                      ++|+++||+.+.+.|++|+.+++++|.++|+|+++|+++|++              ++.+.+++|++|+||++|
T Consensus        80 ~~y~viEGd~l~~~y~s~~~~~~~~~~~~ggsv~k~t~eYe~~~~~~~~~e~~k~~~e~~~~~~K~iE~YLlan  153 (153)
T d2bk0a1          80 FDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKGDAVVPEENIKYANEQNTALFKALEAYLIAN  153 (153)
T ss_dssp             EEEEEEESGGGTTTEEEEEEEEEEEECTTSCEEEEEEEEEEESTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEecccccccEEEEEEEEEEecCCCCCeEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999776679999999999999999999999999999              466899999999999998

>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Plant pathogenesis-related protein PR10
species: Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]

Probab=100.00  E-value=9.5e-39  Score=228.89  Aligned_cols=133  Identities=32%  Similarity=0.633  Sum_probs=123.8

Q ss_pred             ccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCe
Q 032152            2 GVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFR   81 (146)
Q Consensus         2 ~~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~   81 (146)
                      |+++++.|+++++||+++|+++.+|+++ +|+++|+.|+++++++|||++||||.|+|.+|++..++||||+.+|+++|+
T Consensus         1 gv~~~~~E~~~~v~a~k~~ka~~~d~~~-l~~~~p~~i~s~e~~eGdg~~GsIr~~~~~~g~~~~~~kErl~~iD~~~~~   79 (147)
T d1txca1           1 GVFVFRDETSSSVAPAKLYKALTKDSDT-IAQKIDGPIQSIELVEGNGGVGTIKKITANEGDKTSFVLQKVDAIDEANLG   79 (147)
T ss_dssp             CEEEEEEEEEESSCHHHHHHHHHTTHHH-HHHHTTSSEEEEEEEESSSSTTCEEEEEEEETTEEEEEEEEEEEEEGGGTE
T ss_pred             CceEEEEEEeccCCHHHHHHhhhccccc-CccccccccccceeecCCCCcceEEEEEEcCCCcceEEEEEEEEEccCCcE
Confidence            6899999999999999999866669999 788899999999999999999999999999998888999999999999999


Q ss_pred             eEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe--------------chhhhhHHHHHH
Q 032152           82 CKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT--------------KEKAMGLHKIVE  135 (146)
Q Consensus        82 ~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~--------------~~~~~~~~k~~e  135 (146)
                      ++|+++||+++..+|++|.+++++.|.++|+|+++|+++|++              ++.+.+++|++|
T Consensus        80 ~~y~iiEGd~l~~~~~s~~~~~~~~~~~~ggs~vkw~~~y~~~~~~~~~ee~~k~~k~~~~~~~KavE  147 (147)
T d1txca1          80 YDYSIVGGTGLPESLEKLSFETKVVAGSGGGSISKVTLKFHTKGDAPLSDAVRDDALAKGAGFFKAIE  147 (147)
T ss_dssp             EEEEEEESTTSCTTEEEEEEEEEEEECSTTCEEEEEEEEEEETTSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEccCccccceEEEEEEEEEecCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHhhhheecC
Confidence            999999999877789999999999999999999999999998              566678888886

>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

Probab=99.95  E-value=2.3e-26  Score=161.17  Aligned_cols=107  Identities=13%  Similarity=0.294  Sum_probs=96.4

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeE
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCK   83 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (146)
                      .+.+.+++|+|||++||++++ ||.+ +|+|+|. +.+|+..++    |++|.+++.+|+   .+.|||+.+|+++|+++
T Consensus         2 ~~~~~si~I~A~pe~VW~~v~-df~~-~~~W~p~-v~~~~~~~~----G~~R~~~~~~g~---~~~E~l~~~d~~~~~~~   71 (138)
T d3cnwa1           2 AHTTTSMEIFGSPEQVWQLIG-GFNS-LPDWLPY-IPSSKLTEG----GRVRHLANPDGD---TIIERLEVFNDKERYYT   71 (138)
T ss_dssp             EEEEEEEEESSCHHHHHHHHC-CTTC-GGGTCTT-CSEEEEEGG----GTEEEEECTTCC---EEEEEEEEEETTTTEEE
T ss_pred             CcEEEEEEEeCCHHHHHHHHh-Cccc-hHHHhcc-cceeEeecC----ceeEEEEecCCc---eeEEEEEEEeCCCcEEE
Confidence            468889999999999999999 9999 8999996 889886533    899999998875   79999999999999999


Q ss_pred             EEEEecCCCCcceeEEEEEEEEEEcCCC-ceEEEEEEEEEe
Q 032152           84 YTVIEGDMLGTILESIVYDVKFEASGNG-GSICKVASEFHT  123 (146)
Q Consensus        84 y~i~eg~~~~~~~~~y~~t~~v~p~~~g-~s~v~w~~~y~~  123 (146)
                      |++++|++   ++++|.++++|.|.++| +|.|+|+++|+|
T Consensus        72 y~~~~~~~---p~~~~~~~~~l~p~~~g~~t~v~w~~~f~p  109 (138)
T d3cnwa1          72 YSIMNAPF---PVTNYLSTIQVKEGTESNTSLVEWSGTFTP  109 (138)
T ss_dssp             EEEEECSS---SEEEEEEEEEEEECSSTTCEEEEEEEEEEE
T ss_pred             EEEecCCC---cceeeEEEEEEEECCCCCeEEEEEEEEEec
Confidence            99999875   38999999999998765 699999999998

>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Hypothetical protein At1G24000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=2e-25  Score=153.84  Aligned_cols=104  Identities=15%  Similarity=0.201  Sum_probs=92.3

Q ss_pred             cEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCee
Q 032152            3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         3 ~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (146)
                      .++++.+++|++||+++|++++ +.+.                 |+.               ....|||++++|++++++
T Consensus         4 ~gkl~~eveik~~a~kf~~~~~-~~~~-----------------~~~---------------~~~~KerVe~vD~en~si   50 (120)
T d1vjha_           4 KGALSVKFDVKCPADKFFSAFV-EDTN-----------------RPF---------------EKNGKTEIEAVDLVKKTM   50 (120)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHH-HHTT-----------------SCS---------------STTCEEEEEEEETTTTEE
T ss_pred             ceEEEEEEEecCCHHHHHHHhh-hccC-----------------CCC---------------CcccEEEEEEEcCCCCEE
Confidence            3789999999999999999998 6554                 211               014599999999999999


Q ss_pred             EEEEEecCCCCcceeEEEEEEEEEEcCCC-ceEEEEEEEEEe-----------chhhhhHHHHHHHHHhh
Q 032152           83 KYTVIEGDMLGTILESIVYDVKFEASGNG-GSICKVASEFHT-----------KEKAMGLHKIVEAHLLA  140 (146)
Q Consensus        83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g-~s~v~w~~~y~~-----------~~~~~~~~k~~e~~l~~  140 (146)
                      +|+++||+++. .|++|+++++|+|.++| ||+++|+++|++           ++++..++|+||+|||+
T Consensus        51 ty~vieGdvl~-~yksf~~~i~~~p~~~g~gsi~kwt~eYek~~~~~p~p~~~~e~~~~~~K~id~yLL~  119 (120)
T d1vjha_          51 TIQMSGSEIQK-YFKTLKGSIAVTPIGVGDGSHVVWTFHFEKVHKDIDDPHSIIDESVKYFKKLDEAILN  119 (120)
T ss_dssp             EEEEECTTGGG-TEEEEEEEEEEEECSSSSCEEEEEEEEEEESSTTSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeecccc-ceeEEEEEEEEEecCCCCceEEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999875 69999999999999886 899999999999           89999999999999996

>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein TTHA0849
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=3.3e-16  Score=108.35  Aligned_cols=108  Identities=18%  Similarity=0.243  Sum_probs=85.7

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY   84 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y   84 (146)
                      .++.++.|+|||++||+++. |+.+ +|+|+|. +++++++++++ .+....+++...+.......++ ..+++++.+.|
T Consensus         2 ~v~~~~~I~ap~~~V~~~l~-D~~~-~~~w~p~-~~~~~il~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~   76 (146)
T d2d4ra1           2 EVRAERYIPAPPERVYRLAK-DLEG-LKPYLKE-VESLEVVAREG-ARTRSRWVAVAMGKKVRWLEEE-EWDDENLRNRF   76 (146)
T ss_dssp             EEEEEEEESSCHHHHHHHHH-CHHH-HGGGCTT-EEEEEEEEEET-TEEEEEEEEEETTEEEEEEEEE-EEETTTTEEEE
T ss_pred             EEEEEEEECCCHHHHHHHHH-Chhh-HHhhccc-cEEEEEEEecC-CcceEEEEEEeeeeeEEEEEEE-EEcCCCCEEEE
Confidence            57899999999999999999 9999 9999996 88999886543 2344445555443333455554 36889999999


Q ss_pred             EEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           85 TVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        85 ~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      ++..|+     +.++.+++++.|.++ ||.+.|+++|+.
T Consensus        77 ~~~~g~-----~~~~~g~w~l~~~~~-gT~v~~~~~~~~  109 (146)
T d2d4ra1          77 FSPEGD-----FDRYEGTWVFLPEGE-GTRVVLTLTYEL  109 (146)
T ss_dssp             EEEEES-----CSEEEEEEEEEECSS-SEEEEEEEEEEC
T ss_pred             EEccCC-----cceEEEEEEEEecCC-ceEEEEEEEEEE
Confidence            999886     557899999999875 699999999987

>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Smu440-like
domain: Hypothetical protein SMU440
species: Streptococcus mutans [TaxId: 1309]

Probab=99.63  E-value=1.5e-14  Score=98.70  Aligned_cols=105  Identities=7%  Similarity=0.120  Sum_probs=85.9

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY   84 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y   84 (146)
                      +++.++.|+|||++||+++. |+.+ +|+|+|. +++++. +++.++|+...+++..+.   .+..+++.+++. ++++|
T Consensus         2 ~~s~si~I~Ap~e~Vw~~~~-d~~~-~~~W~~~-~~~~~~-~~~~~~G~~~~~~~~~~~---~~~~~v~~~~p~-~~~~~   73 (137)
T d2b79a1           2 KFSFELAVNTKKEDAWTYYS-QVNQ-WFVWEGD-LEQISL-EGEFTTGQKGKMKMEDMP---ELAFTLVEVREN-QCFSD   73 (137)
T ss_dssp             EEEEEEEESSCHHHHHHHHH-CGGG-GGGTSTT-EEEEEE-SSSSSTTCEEEEEETTSC---CEEEEECCCBTT-TEEEE
T ss_pred             ceEEEEEEcCCHHHHHHHHh-hhhh-CccccCc-ccceee-cccccceEEEEEEEcCCc---ceeeeeecccCC-cEEEE
Confidence            68899999999999999999 9999 9999996 888885 566678998888876654   466778877655 57888


Q ss_pred             EEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           85 TVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        85 ~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      .... +     ...+...+.+.+.++|+|.++|+.+|..
T Consensus        74 ~~~~-~-----~~~~~~~~~~~~~~~g~t~vt~~~~~~g  106 (137)
T d2b79a1          74 LTAT-P-----FGNVLFEHEILENPDGTISLRHSVSLTD  106 (137)
T ss_dssp             EEEE-T-----TEEEEEEEEEEECTTSCEEEEEEEEECS
T ss_pred             Eecc-c-----ceeeeeEEEEccCCCCcEEEEEEEeccc
Confidence            7632 2     4467788899999888999999999986

>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Multifunctional enzyme TcmN, cyclase/aromatase domain
species: Streptomyces glaucescens [TaxId: 1907]

Probab=99.63  E-value=1e-14  Score=101.29  Aligned_cols=111  Identities=17%  Similarity=0.185  Sum_probs=82.1

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCC-CCCcEEEEEeecCCcceeeEEEEEEeeCCCCee
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDG-GAGSIKITNFADGGNFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg-~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (146)
                      ++++.+++|+|||++||+++. |+.+ +|+|+|+ +.+++++++++ +.+....+....++.......+ ...++..+.+
T Consensus         3 ~~~e~si~I~Ap~~~Vw~~l~-D~~~-~~~w~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   78 (155)
T d2rera1           3 ARTDNSIVVNAPFELVWDVTN-DIEA-WPELFSE-YAEAEILRQDGDGFDFRLKTRPDANGRVWEWVSH-RVPDKGSRTV   78 (155)
T ss_dssp             EEEEEEEEESSCHHHHHHHHT-CGGG-HHHHCSS-EEEEEEEECCSSCEEEEEEECCCTTSCCCEEEEE-EEEEGGGTEE
T ss_pred             CEEEEEEEECCCHHHHHHHHH-Chhh-Hhhhhhh-ceEEEEeecCCCceEEEEEEEEeeeeeeEEEEEE-EEEcCCccEE
Confidence            567999999999999999999 9999 9999997 88888776542 3333333333333322333333 4577888888


Q ss_pred             EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      .|....++    +...+.+++.|+|.+ +||.++|+.+|+.
T Consensus        79 ~~~~~~~~----~~~~~~~~w~~~~~~-~gT~v~~~~~~~~  114 (155)
T d2rera1          79 RAHRVETG----PFAYMNLHWTYRAVA-GGTEMRWVQEFDM  114 (155)
T ss_dssp             EEEESSCT----TEEEEEEEEEEEEET-TEEEEEEEEEEEE
T ss_pred             EEEeecCc----cceeeEEEEEEeecC-CccEEEEEEEEEE
Confidence            77775443    378899999999986 4799999999986

>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein APE2225
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.49  E-value=1.8e-12  Score=87.90  Aligned_cols=111  Identities=16%  Similarity=0.168  Sum_probs=73.7

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeE
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCK   83 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~   83 (146)
                      .+++.+++|+|||++||+++. |+.+ +|.|+|+ +++++...+.  .+.......................++... ..
T Consensus         3 ~k~e~si~I~ap~e~Vw~~l~-D~~~-~~~w~p~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   76 (147)
T d2ns9a1           3 VRYEGSFEVSKTPEEVFEFLT-DPKR-FSRAFPG-FKSVEVEDGS--FTIELRLSLGPLRGDARVRASFEDLEKPSK-AT   76 (147)
T ss_dssp             EEEEEEEEESSCHHHHHHHHT-CHHH-HGGGSTT-EEEEEEETTE--EEEEEEEESSSSEEEEEEEEEEEEEETTTE-EE
T ss_pred             EEEEEEEEEcCCHHHHHHHHh-CHhh-hhhcccc-hhheeecccc--cceeEEEEEEEEeeEeeeeeeeeeecCCcc-ee
Confidence            689999999999999999998 9999 9999997 8888754332  122222222221111223334444444443 33


Q ss_pred             EEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           84 YTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        84 y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      +........  ...++..++.+.|.++ ||.++|+.+++.
T Consensus        77 ~~~~~~~~~--~~~~~~~~~~l~~~~~-gt~v~~~~~~~~  113 (147)
T d2ns9a1          77 VKGSGRGAG--STLDFTLRFAVEPSGG-GSRVSWVFEGNV  113 (147)
T ss_dssp             EEEEEECSS--EEEEEEEEEEEEEETT-EEEEEEEEEEEE
T ss_pred             EEEeeeccc--cceeeEEEEEEEecCC-CcEEEEEEEEEe
Confidence            333333322  3678899999999854 699999999988

>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: CoxG-like
domain: Hypothetical protein GKP20
species: Geobacillus kaustophilus [TaxId: 1462]

Probab=99.33  E-value=4.6e-11  Score=81.73  Aligned_cols=112  Identities=9%  Similarity=-0.001  Sum_probs=75.3

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY   84 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y   84 (146)
                      ....+++|++|+++||+++. |..+ +|+++|+ +++++.++.+...+.++ +.++.-...-..+.++...+..... ..
T Consensus         2 n~s~~~~i~~~~e~v~~~l~-D~~~-~~~~~Pg-~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~   76 (147)
T d2pcsa1           2 NGNGSIELKGTVEEVWSKLM-DPSI-LSKCIMG-CKSLELIGEDKYKADLQ-IGIAAVKGKYDAIIEVTDIKPPYHY-KL   76 (147)
T ss_dssp             EEEEEEEEESCHHHHHHHHT-CHHH-HHHHSTT-EEEEEEEETTEEEEEEE-ECCGGGCEEEEEEEEEEEEETTTEE-EE
T ss_pred             CCCceEEeCCCHHHHHHHHc-CHHH-HHhhCcc-hhhceecCCCEEEEEEE-EeecceeeeeEEEEEEeccCcccce-eE
Confidence            46789999999999999998 9999 9999997 88888775542222222 2222211112344455555555543 23


Q ss_pred             EEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           85 TVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        85 ~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      ........  ......+.+.+.+.++++|.++|+++|+.
T Consensus        77 ~~~~~~~~--~~~~~~~~~~~~~~~~~~T~v~~~~~~~~  113 (147)
T d2pcsa1          77 LVNGEGGP--GFVNAEGVIDLTPINDECTQLTYTYSAEV  113 (147)
T ss_dssp             EEEEEETT--EEEEEEEEEEEEESSSSEEEEEEEEEEEE
T ss_pred             eecccccc--chhcceeEEeeecccCCcEEEEEEEEEEE
Confidence            32222222  36677788888888888999999999998

>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: oligoketide cyclase/dehydrase-like
domain: Hypothetical protein CC1736
species: Caulobacter crescentus [TaxId: 155892]

Probab=99.32  E-value=1.4e-11  Score=85.58  Aligned_cols=110  Identities=19%  Similarity=0.206  Sum_probs=78.5

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCC-CCCCcEEEEEee--cCCcceeeEEEEEEeeCCCC
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGD-GGAGSIKITNFA--DGGNFKYAKHRIDELDKDNF   80 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGd-g~~Gsir~~~~~--~g~~~~~~kErl~~~D~~~~   80 (146)
                      .....+..|++||+++|+++. |+.+ +|.|+|. .+++++++.. .+-+......+.  .++.......+ ...+..+.
T Consensus         2 ~~~~~~~vi~~~~e~vf~vV~-Dve~-Yp~FlP~-c~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   77 (148)
T d1t17a_           2 HRHVVTKVLPYTPDQLFELVG-DVDA-YPKFVPW-ITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFATR-VRRDKDAR   77 (148)
T ss_dssp             CEEEEEEEESSCTHHHHHHHT-TTTC-CSSCCSS-CCCCCEEEEEEETTEEEEEEEEECSTTSSCCEEEEE-EEEETTTC
T ss_pred             CcceEEEEeCCCHHHHHHHHH-HHHh-hhhhccc-cCccEEEecccccccceeeEEEEEEeeeeEEEEEEE-eeecCCce
Confidence            345667799999999999999 9999 9999996 7787776542 222333333333  33322333333 24667777


Q ss_pred             eeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           81 RCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        81 ~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      .+.....+|+     ++...+.|.+.|.++ +|.|+|.++|+.
T Consensus        78 ~~~~~~~~g~-----f~~l~~~W~f~~~~~-~T~V~~~l~fe~  114 (148)
T d1t17a_          78 SIDVSLLYGP-----FKRLNNGWRFMPEGD-ATRVEFVIEFAF  114 (148)
T ss_dssp             EEEEEESSTT-----SSCEEEEEEEEEETT-EEEEEEEEEECC
T ss_pred             EEEEeccCch-----hhhcccceeeccCCC-ceEEEEEEEEEE
Confidence            7766665543     678899999999875 699999999997

>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein Atu1531
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.23  E-value=1e-10  Score=80.26  Aligned_cols=100  Identities=10%  Similarity=0.064  Sum_probs=71.8

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeec-CCcceeeEEEEEEeeCCCCee
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD-GGNFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~-g~~~~~~kErl~~~D~~~~~~   82 (146)
                      .+.+.+++|++|+++||+++. |+.+ +|+|+|+ +.+++..+|+      +.+.... +|   .++-+++. |++++.+
T Consensus         5 ~~~~~~i~I~~p~~~v~~~~~-d~~~-~p~w~~~-l~~~~~~~~~------~~~~~~~~~G---~~~~~i~~-~~p~~~i   71 (133)
T d2qpva1           5 QSRIIHLSVEKPWAEVYDFAA-NPGN-MPRWAAG-LAGGLEADGE------DWIAKGGPLG---EVRVNFAP-HNEFGVI   71 (133)
T ss_dssp             CEEEEEEEESSCHHHHHHHHH-CGGG-GGGTCGG-GTTCCEEETT------EEEEECSSSC---EEEEEECC-CCSSCBC
T ss_pred             eEEEEEEEECCCHHHHHHHHh-Chhh-cchhhhc-cceeEEecCC------cEEEEecCCC---cEEEEEEE-cCCCCEE
Confidence            567788999999999999999 9999 9999997 7777655442      2333332 33   45666664 7888999


Q ss_pred             EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      .|+...|+..     .-..++++.|.++ +|.+.|+. |.+
T Consensus        72 ~w~~~~~~~~-----~g~v~fr~~~~g~-gt~v~~~~-~~p  105 (133)
T d2qpva1          72 DHVVTLPDGL-----KVYNALRVTPNGS-GTEVSFTL-LRL  105 (133)
T ss_dssp             CEEEECTTSC-----EEEEEEEEEEETT-EEEEEEEE-ECC
T ss_pred             EEEEecCCCC-----EEEEEEEEccCCC-eEEEEEEE-EeC
Confidence            9999877532     2345677777654 58887776 444

>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein MM0500
species: Methanosarcina mazei [TaxId: 2209]

Probab=99.16  E-value=1.8e-09  Score=75.51  Aligned_cols=132  Identities=16%  Similarity=0.020  Sum_probs=88.8

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeec-CCcceeeEEEEEEeeCCCCee
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD-GGNFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~-g~~~~~~kErl~~~D~~~~~~   82 (146)
                      ..+..+.+|+||+++||+++. |... +++|++.---++...+.+..+|....+.+.. +|....+.-++..+++.+ ++
T Consensus        12 ~~i~i~r~i~Ap~e~Vw~a~t-dpe~-l~~W~~p~~~~~~~~~~d~~~gg~~~~~~~~~~g~~~~~~g~v~~i~~~~-rl   88 (163)
T d1xuva_          12 QEIIITREFDAPRELVFKAFT-DPDL-YTQWIGPRGFTTALKIFEPKNGGSWQYIQKDPEGNEYAFHGVNHDVTEPE-RI   88 (163)
T ss_dssp             SEEEEEEEESSCHHHHHHHHH-CHHH-HTTTCSSTTCEEEEEEECCSTTCEEEEEEECTTSCEEEEEEEEEEEETTT-EE
T ss_pred             ceEEEEEEeCCCHHHHHHHHc-ChHH-hhhccCCCCccceeeeeeceeCceEEEEEEecCCCceEEEEEEEEecCCC-EE
Confidence            457788899999999999999 9998 7888753222334445564455555454442 333345677888888886 56


Q ss_pred             EEEEE-ecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe------------chhhhhHHHHHHHHHhh
Q 032152           83 KYTVI-EGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT------------KEKAMGLHKIVEAHLLA  140 (146)
Q Consensus        83 ~y~i~-eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~------------~~~~~~~~k~~e~~l~~  140 (146)
                      .|+.- ++...  .-.....++.+++.++|+|.+.++..|..            .+.+..++..|++||-+
T Consensus        89 ~~tw~~~~~~~--~~~~~~v~~~~e~~~~g~t~~~~~~~~~~~~~~~~~~~~g~~~GW~~~L~~L~~~le~  157 (163)
T d1xuva_          89 ISTFEFEGLPE--KGHVILDTARFEALPGDRTKLTSHSVFQTIEDRDGMLQSGMEEGINDSYERLDELLEK  157 (163)
T ss_dssp             EEEEEETTSSS--SCCCEEEEEEEEEETTTEEEEEEEEECSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccCCCC--CCCcEEEEEEEEEeCCCcEEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66643 33222  23346788999999888888888887765            12345677778888754

>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein SA2116
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.97  E-value=4.7e-08  Score=68.13  Aligned_cols=132  Identities=14%  Similarity=0.094  Sum_probs=84.3

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeec-CCcceeeEEEEEEeeCCCCee
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFAD-GGNFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~-g~~~~~~kErl~~~D~~~~~~   82 (146)
                      ..++.+..|+||+++||+++. |... +++|.+..--.+...+.+..+|..-.+.+.. ++....+.-++.++++.+ ++
T Consensus         7 ~~i~ier~i~Ap~e~Vw~a~t-dpe~-l~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~~~~~g~v~e~~p~~-~i   83 (164)
T d2il5a1           7 VEVEIEKLYKFSPELVYEAWT-KKDL-LKQWFMTSARTNKEIEADVKEGGKYRIVDQQRNGKVNVIEGIYESLVMDE-YV   83 (164)
T ss_dssp             EEEEEEEEESSCHHHHHHHTT-CHHH-HTTTSSSCTTTEEEEEECCSTTCEEEEEEECGGGCEEEEEEEEEEEETTT-EE
T ss_pred             EEEEEEEEECCCHHHHHHHHc-CHHH-HhCcccCCCccceEEEeecccCceEEEEEecCCcceEEEEEEEEEEcCCC-EE
Confidence            467888899999999999999 9998 7787643222233344565555555455442 232335566788887766 56


Q ss_pred             EEEE-EecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe----------------------chhhhhHHHHHHHHHh
Q 032152           83 KYTV-IEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT----------------------KEKAMGLHKIVEAHLL  139 (146)
Q Consensus        83 ~y~i-~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~----------------------~~~~~~~~k~~e~~l~  139 (146)
                      .|+. .++...    .....++.+.+..+|+|.++++.+..+                      ...+..++..|.+||-
T Consensus        84 ~~t~~~~~~~~----~~~~~~~~~~e~~~ggT~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~lE  159 (164)
T d2il5a1          84 KMTIGMPGLSE----TQDVIEVEFFERETGGTQMLFYYRSLVEKERRFTNLEYKQKKKEYHDAMVHGFELMFDKMYHVIE  159 (164)
T ss_dssp             EEEESCC--CC----CCEEEEEEEEECSSSSEEEEEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccCCCC----CceEEEEEEEEcCCCCEEEEEEEeecChhHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6664 222211    123456667777778999999998876                      1335566777777775


Q ss_pred             hCC
Q 032152          140 ANP  142 (146)
Q Consensus       140 ~~~  142 (146)
                      +-+
T Consensus       160 ~g~  162 (164)
T d2il5a1         160 TST  162 (164)
T ss_dssp             TTS
T ss_pred             ccC
Confidence            543

>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein CV1439
species: Chromobacterium violaceum [TaxId: 536]

Probab=98.86  E-value=1.1e-07  Score=64.68  Aligned_cols=131  Identities=18%  Similarity=0.142  Sum_probs=82.4

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEee--cCCcceeeEEEEEEeeCCCCe
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA--DGGNFKYAKHRIDELDKDNFR   81 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~--~g~~~~~~kErl~~~D~~~~~   81 (146)
                      .+++.+..|+||+++||+++. |... +.+|++.---.+...+++-.+|..-.+.+.  ++|..-.+.=++.++++.+ +
T Consensus         2 ~ti~~~r~i~ap~e~Vw~a~T-dp~~-~~~W~~p~~~~~~~~~~d~~~Gg~~~~~~~~~~~g~~~~~~g~v~~~~p~~-~   78 (143)
T d1z94a1           2 NTIRLHRVLSAPPERVYRAFL-DPLA-LAKWLPPEGFVCKVLEHDARVGGAYKMEFLAFASGQKHAFGGRYLELVPGE-R   78 (143)
T ss_dssp             CCEEEEEEESSCHHHHHHHTT-CHHH-HHHHSSCTTEEEEEEEECCSTTCEEEEEEEETTTCCEEEEEEEEEEEETTT-E
T ss_pred             cEEEEEEEECCCHHHHHHHhc-CHHH-HhhhhCCCCccceeEeeccccceeEEEEEeeCCCCcEEEEEEEEEEecCCe-E
Confidence            467778899999999999998 9998 778765322233444566455555444443  3344344566778887777 4


Q ss_pred             eEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe--------chhhhhHHHHHHHHHhh
Q 032152           82 CKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT--------KEKAMGLHKIVEAHLLA  140 (146)
Q Consensus        82 ~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~--------~~~~~~~~k~~e~~l~~  140 (146)
                      +.|+-...+...  -.....++.+.+.++ +|.++.+.+-.+        ...+...+..|.+||-+
T Consensus        79 i~~t~~~~~~~~--~~~~~v~~~l~~~~~-gT~lt~~~~~~~~~~~~~~~~~GW~~~l~~L~~~lE~  142 (143)
T d1z94a1          79 IRYTDRFDDAGL--PGDMITTITLAPLSC-GADLSIVQEGIPDAIPPENCYLGWQQSLKQLAALVEP  142 (143)
T ss_dssp             EEEEEEESCCC-----CEEEEEEEEEETT-EEEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHSC
T ss_pred             EEEEEeccCCCC--CCcEEEEEEEEEcCC-CEEEEEEEEcCCChhHHHHHHHHHHHHHHHHHHHHcC
Confidence            667754333221  134567889999865 587776654323        34456667777777643

>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein NE0264
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.77  E-value=1.2e-07  Score=65.99  Aligned_cols=133  Identities=16%  Similarity=0.110  Sum_probs=84.3

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhcccccccccc-ccceeeEEEEcCCCCCCcEEEEEee-cCCcceeeEEEEEEeeCCCCe
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLV-PQAIKSVEILQGDGGAGSIKITNFA-DGGNFKYAKHRIDELDKDNFR   81 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~-P~~v~s~~~~eGdg~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~~~   81 (146)
                      ..+..+.+|+||+++||+++. |... +.+|+ |.-. .+...++|-.+|..-.+.+. ++|......-++.++++.+ +
T Consensus         5 ~~l~i~r~i~ap~e~Vw~a~t-dpe~-~~~W~~p~~~-~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~g~v~ei~p~~-r   80 (165)
T d1xfsa_           5 LDLMLKRELAVPVNLVWRGLT-EPEL-LKKWFVPKPW-SISDCRVDLRPGGEFYTVMQDPEGNKFPNSGCFLEVTDEK-R   80 (165)
T ss_dssp             TEEEEEEEESSCHHHHHHHHH-CHHH-HTTTSSCTTC-EEEEEEECCSTTCEEEEEEECTTCCEEEEEEEEEEEETTT-E
T ss_pred             cEEEEEEEEcCCHHHHHHHHc-CHHH-HhhcCCCCCc-cceeecccceeCceEEEEEECCCCceeeEEEEEEEecCCc-E
Confidence            457788899999999999999 9998 77775 4323 23334566445555444443 3343334556778887775 5


Q ss_pred             eEEEE--Eec----------CCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe------------chhhhhHHHHHHHH
Q 032152           82 CKYTV--IEG----------DMLGTILESIVYDVKFEASGNGGSICKVASEFHT------------KEKAMGLHKIVEAH  137 (146)
Q Consensus        82 ~~y~i--~eg----------~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~------------~~~~~~~~k~~e~~  137 (146)
                      +.|+-  ..+          +.. ..-.....++.+.+.+ ++|.++++..+..            .+....++..|++|
T Consensus        81 l~~t~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~l~~~~-~gT~lt~~~~~~~~~~~~~~~~~g~~~GW~~~l~~L~~~  158 (165)
T d1xfsa_          81 LIWTSALVKNYRPAVPATTSDKE-CAHIVMTAVIELQPTS-SGTRYTACAMHNTPGQRKLHEEMGFHEGWGTTITQLEEL  158 (165)
T ss_dssp             EEEESSEEGGGEECCC------------CCEEEEEEEECS-SSEEEEEEEECSSHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             EEEEEeecccccccccccccccC-CCCccEEEEEEEEEcC-CcEEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55652  111          100 0122345788888875 4699999887765            23456788889999


Q ss_pred             HhhCC
Q 032152          138 LLANP  142 (146)
Q Consensus       138 l~~~~  142 (146)
                      |-+++
T Consensus       159 le~~~  163 (165)
T d1xfsa_         159 LKQEK  163 (165)
T ss_dssp             HHHHS
T ss_pred             HHhcC
Confidence            97765

>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein SPO3351
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.55  E-value=5.4e-07  Score=60.93  Aligned_cols=128  Identities=13%  Similarity=0.011  Sum_probs=74.0

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEE--cCCCCCCcEEEEEee-cCCcceeeEEEEEEeeCCCCe
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEIL--QGDGGAGSIKITNFA-DGGNFKYAKHRIDELDKDNFR   81 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~--eGdg~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~~~   81 (146)
                      .+..+..|+|||++||+++. |... +.+|++.--..+...  +.+-.+|.-..+.+. ..|....+.-++.++++.+ +
T Consensus         2 el~i~r~i~a~~e~Vw~a~t-dp~~-l~~W~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~g~~~~~~g~v~~~~p~~-r   78 (143)
T d3elia1           2 DLRLEREFAVAPEALFAWVS-DGAK-LLQWWGPEGLHVPADQHDLDFTRLGPWFSVMVNGEGQRYKVSGQVTHVKPPQ-S   78 (143)
T ss_dssp             EEEEEEEESSCHHHHHHHTT-CHHH-HHHHCSSTTCBCCTTSBCCCCSSSEEEEEEEECTTCCEEEEEEEEEEEETTT-E
T ss_pred             eEEEEEEECCCHHHHHHHhc-CHHH-HhhhcCCCCceeeeeeEEEeeccCccEEEEEECCCCcEEEEEEEEEEcCCCC-E
Confidence            46678899999999999998 9998 677764211111111  122233333333333 2233334566788888876 4


Q ss_pred             eEEE--EEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEE-EEe-------chhhhhHHHHHHHHH
Q 032152           82 CKYT--VIEGDMLGTILESIVYDVKFEASGNGGSICKVASE-FHT-------KEKAMGLHKIVEAHL  138 (146)
Q Consensus        82 ~~y~--i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~-y~~-------~~~~~~~~k~~e~~l  138 (146)
                      +.|+  ..+.+..  .-..-..++.++|.++ +|.++++.+ |..       .+.+..++..|++||
T Consensus        79 l~~t~~~~~~~~~--~~~~~~vt~~l~~~~~-gT~l~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l  142 (143)
T d3elia1          79 VGFTWGWHDDDDR--RGAESHVMFIVEPCAK-GARLILDHRELGDDEMSLRHEEGWTSSLRKLAAEL  142 (143)
T ss_dssp             EEEEEEEECTTSC--EEEEEEEEEECCBC---CEEEEEEEESCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeecCCCCC--CCCcEEEEEEEEEcCC-CEEEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            5454  4433322  1223456777788754 588877654 322       455667777777776

>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein EF2215
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.42  E-value=2.6e-06  Score=59.64  Aligned_cols=116  Identities=9%  Similarity=0.086  Sum_probs=78.9

Q ss_pred             cEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCee
Q 032152            3 VMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         3 ~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~   82 (146)
                      ...+..|+.|+||+++||+++. |... +++|+|. ...     ++-.+|.--.+.+..+    ...-++.++|+. +++
T Consensus        11 ~~~f~~er~i~ap~e~Vw~AlT-dpe~-l~~W~~~-~~~-----~d~~~GG~~~~~~~~~----~~~~~v~~~epp-~rL   77 (160)
T d2nn5a1          11 TIYFGTERAISASPQTIWRYLT-ETDK-LKQWFPE-LEI-----GELGVNGFWRFILPDF----EETMPFTDYAEE-KYL   77 (160)
T ss_dssp             EEEEEEEEEESSCHHHHHHHHH-CHHH-HHHHCTT-EEE-----EECSTTCEEEEEETTE----EEEEEEEEEETT-TEE
T ss_pred             cEEEEEEEEecCCHHHHHHHHc-CHHH-HHhhCCC-CCc-----ccccCCCeeEEEcCCC----CcceEEEEEecC-CEE
Confidence            3567889999999999999999 9999 8999985 322     2222233333444433    344567778755 477


Q ss_pred             EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe---------chhhhhHHHHHHHHHhhC
Q 032152           83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT---------KEKAMGLHKIVEAHLLAN  141 (146)
Q Consensus        83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~---------~~~~~~~~k~~e~~l~~~  141 (146)
                      .|+-  +.        =..++.+.|.++|+|.+..+-....         ......++..|.++|-..
T Consensus        78 ~~tW--~~--------~~v~~eL~~~~~~~t~l~l~~~~~~~~~~~~~~~~~GW~~~Ld~L~~~leg~  135 (160)
T d2nn5a1          78 GVTW--DT--------GIIYFDLKEQAPHQTLLVFSESLPENFTTPRHKDIAGWSIVLNRLKQVVETP  135 (160)
T ss_dssp             EEEE--TT--------EEEEEEEEEEETTEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             EEEe--cC--------ceEEEEEecCCCCeEEEEEEEecCccccchhhhhHHHHHHHHHHHHHHHcCC
Confidence            7875  22        1357888898788899888877644         224667778888887554

>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BH1534
species: Bacillus halodurans [TaxId: 86665]

Probab=98.32  E-value=7.6e-06  Score=54.90  Aligned_cols=94  Identities=11%  Similarity=0.108  Sum_probs=63.0

Q ss_pred             EEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCCeeEE
Q 032152            5 RFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNFRCKY   84 (146)
Q Consensus         5 ~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~~~~y   84 (146)
                      .++.++.|+||+++||+++. |... +++|++..       +.+..+|..-.+.. +++   .+.=++.++++.+ ++.|
T Consensus         6 ~i~~~~~i~ap~e~Vw~alt-~p~~-~~~W~~~~-------~~~~~~g~~~~~~~-~~~---~~~g~v~~~~~~~-~l~~   71 (138)
T d1xn5a_           6 DIKKEVRFNAPIEKVWEAVS-TSEG-LAFWFMEN-------DLKAETGHHFHLQS-PFG---PSPCQVTDVERPI-KLSF   71 (138)
T ss_dssp             CEEEEEEESSCHHHHHHHTT-SHHH-HHTTSCCB-------CCCSCTTCEEEEEC-SSC---EEEEEEEEEETTT-EEEE
T ss_pred             eEEEEEEECCCHHHHHHHHc-CHHH-hceEccCC-------cccccceeeEEecC-Ccc---ceeEEEEEEeCCc-EEEE
Confidence            47889999999999999999 9998 88999752       12223344333322 222   3445677787665 7788


Q ss_pred             EEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEE
Q 032152           85 TVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEF  121 (146)
Q Consensus        85 ~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y  121 (146)
                      +.-.+        +...++.++|.+ ++|.++++.+-
T Consensus        72 ~~~~~--------~~~v~~~l~~~~-~gT~lt~~~~g   99 (138)
T d1xn5a_          72 TWDTD--------GWSVTFHLKEEE-NGTIFTIVHSG   99 (138)
T ss_dssp             EETTT--------TEEEEEEEEECS-SSEEEEEEEEC
T ss_pred             EecCC--------CeEEEEEEEEcC-CcEEEEEEEec
Confidence            76211        246788899975 56888887654

>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Calicheamicin gene cluster protein CalC
species: Micromonospora echinospora [TaxId: 1877]

Probab=98.19  E-value=1.2e-06  Score=60.22  Aligned_cols=126  Identities=16%  Similarity=0.154  Sum_probs=73.1

Q ss_pred             EEEEEEecCCHHHHHHHhhhccccccccccccc-----eeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCC
Q 032152            6 FEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQA-----IKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNF   80 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~-----v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~   80 (146)
                      +..+++|+||+++||+++. |  . +++|.|..     +.+..+..+.|  |..+ +...+|.  ..+.=++.++++.+ 
T Consensus         6 v~~~~~i~Ap~e~Vf~a~t-e--~-~~~Ww~~~~~~~~~~~~~~~~~~g--G~~~-~~~~dG~--~~~~g~v~ei~p~~-   75 (155)
T d1zxfa1           6 VRHSVTVKADRKTAFKTFL-E--G-FPEWWPNNFRTTKVGAPLGVDKKG--GRWY-EIDEQGE--EHTFGLIRKVDEPD-   75 (155)
T ss_dssp             EEEEEEESSHHHHHHHHHT-T--C-SSSSSSGGGSTTTTCSSCEEETTT--TEEE-CCCTTTS--CCCCEEEEEEETTT-
T ss_pred             EEEEEEEeCCHHHHHHHHH-h--h-hHhhcCCCCCCceEEEEEEeeCCC--ceEE-EEccccc--eeeeEEEEEEecCc-
Confidence            6789999999999999998 7  3 56666432     22222222222  4332 2222332  12334677787777 


Q ss_pred             eeEEEEE-ecCCCCcceeEEEEEEEEEEcCCCceEEEEEEE-EEe-------------chhhhhHHHHHHHHHhhC
Q 032152           81 RCKYTVI-EGDMLGTILESIVYDVKFEASGNGGSICKVASE-FHT-------------KEKAMGLHKIVEAHLLAN  141 (146)
Q Consensus        81 ~~~y~i~-eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~-y~~-------------~~~~~~~~k~~e~~l~~~  141 (146)
                      ++.|+-- .++....+-.....++.+++.++|+|.++.+.. |..             .+....++..|.++|-++
T Consensus        76 rl~~tw~~~~~~~~~~~~~s~v~~~~~~~~~~~T~ltl~h~g~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~le~~  151 (155)
T d1zxfa1          76 TLVIGWRLNGFGRIDPDNSSEFTVTFVADGQKKTRVDVEHTHFDRMGTKHAKRVRNGMDKGWPTILQSFQDKIDEE  151 (155)
T ss_dssp             EEEEECCCSSSSSCCCSSCCCEEEEEEEETTTEEEEEEEECSSTTSCHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCccccccccceEEEEEEEecCCCCEEEEEEEeccCcccchhHHHHHhhhhhhHHHHHHHHHHHhhhh
Confidence            6667632 222111112234578888898888898877654 221             235667778888877543

>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Hypothetical protein BC4709
species: Bacillus cereus [TaxId: 1396]

Probab=98.16  E-value=6.4e-06  Score=56.05  Aligned_cols=94  Identities=9%  Similarity=0.088  Sum_probs=62.9

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEee-cCCcceeeEEEEEEeeCCCCee
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA-DGGNFKYAKHRIDELDKDNFRC   82 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~-~g~~~~~~kErl~~~D~~~~~~   82 (146)
                      ..+..++.|+||+++||+++. |... +.+|++..  .+     +..+|..  +++. +++.   ..=++.++++. +++
T Consensus         8 ~~i~~~~~i~ap~e~Vw~alT-dp~~-l~~W~~~~--~~-----~~~~G~~--~~~~~~~g~---~~g~v~~~~p~-~~l   72 (143)
T d1xn6a_           8 NDIKQTIVFNASIQKVWSVVS-TAEG-IASWFMPN--DF-----VLEVGHE--FHVQSPFGP---SPCKVLEIDEP-NHL   72 (143)
T ss_dssp             CCEEEEEEESSCHHHHHHTTS-CSHH-HHTTSCCB--CC-----CCCTTCE--ECBCCTTCC---CCEEEEEEETT-TEE
T ss_pred             CeEEEEEEECCCHHHHHHHhc-ChHH-hceEeecc--Cc-----ccccCce--EEEeccccc---eeEEEEEEeCC-cEE
Confidence            347889999999999999999 9998 78998641  12     2123332  3333 2232   33456778665 477


Q ss_pred             EEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEE
Q 032152           83 KYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASE  120 (146)
Q Consensus        83 ~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~  120 (146)
                      .|+-- .+       ....++.++|.++|+|.++.+-.
T Consensus        73 ~~tw~-~~-------~~~v~~~l~~~~~G~T~l~l~h~  102 (143)
T d1xn6a_          73 SFSWD-TD-------GWVVSFDLKDLGDNKTEFTLIHG  102 (143)
T ss_dssp             EEEET-TT-------TEEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEc-CC-------CcEEEEEEEEcCCCcEEEEEEEe
Confidence            78751 11       23578889998888899887654

>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.5e-05  Score=53.71  Aligned_cols=120  Identities=7%  Similarity=0.079  Sum_probs=71.0

Q ss_pred             CccEEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEeeCCCC
Q 032152            1 MGVMRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDELDKDNF   80 (146)
Q Consensus         1 m~~~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~D~~~~   80 (146)
                      |=..++..+.+++|||++||+++- |... +.+|+.... .     .|..+|..  +.+..|    .+.=++.++++.+ 
T Consensus         1 ~~T~~i~~~r~~~ap~e~Vw~a~t-dpe~-l~~W~~~~~-~-----~d~~~Gg~--f~~~~g----~~~G~~~ev~p~~-   65 (132)
T d1x53a1           1 IPTCKITLKETFLTSPEELYRVFT-TQEL-VQAFTHAPA-T-----LEADRGGK--FHMVDG----NVSGEFTDLVPEK-   65 (132)
T ss_dssp             CCEEEEEEEEEESSCHHHHHHHTT-CHHH-HHHHSCSCC-B-----CCCSTTCC--CBBTTT----TEECCEEEEETTT-
T ss_pred             CCceEEEEEEEECCCHHHHHHHHc-CHHH-HHhhhCCcc-c-----cccccCCE--EEEEec----ceeEEEEEEeCCC-
Confidence            445678899999999999999998 9998 788884312 2     33222221  222233    1233556677666 


Q ss_pred             eeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe-------chhhhh-HHHHHHHHH
Q 032152           81 RCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT-------KEKAMG-LHKIVEAHL  138 (146)
Q Consensus        81 ~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~-------~~~~~~-~~k~~e~~l  138 (146)
                      ++.|+---.+..+...  -..++.++|.+ ++|.++.+.+.-|       ++.... ++..|.+++
T Consensus        66 rlv~tw~~~~~~~~~~--s~vt~~l~~~~-~~T~l~l~~~g~p~~~~e~~~~GW~~~~~~~lk~~f  128 (132)
T d1x53a1          66 HIVMKWRFKSWPEGHF--ATITLTFIDKN-GETELCMEGRGIPAPEEERTRQGWQRYYFEGIKQTF  128 (132)
T ss_dssp             EEEEEEEETTSCTTCC--EEEEEECCBCS-SCEEEEEEEEEEEHHHHHHHHHTTHHHHHHHHHHHT
T ss_pred             EEEEEEecCCCCCCCc--EEEEEEEEECC-CcEEEEEEEECCCcchHHHHHhhHHHHHHHHHHHHc
Confidence            4444421122221112  34677778865 5799999998777       233332 455555554

>d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: AHSA1 domain
domain: Uncharacterized protein BPP1335
species: Bordetella parapertussis [TaxId: 519]

Probab=98.07  E-value=4.2e-05  Score=53.82  Aligned_cols=124  Identities=9%  Similarity=-0.020  Sum_probs=78.7

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecC--------------CcceeeE
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADG--------------GNFKYAK   69 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g--------------~~~~~~k   69 (146)
                      .++..+..|+||+++||+++. |... +.+|+...       +.+-.+|..-.+.+..+              +....+.
T Consensus        19 ~~l~~er~~~Ap~e~VW~AlT-dpe~-l~~W~~p~-------~~d~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (183)
T d2k5ga1          19 QSIRFERLLPGPIERVWAWLA-DADK-RARWLAGG-------ELPRQPGQTFELHFNHAALTAETAPARYAQYDRPIVAR   89 (183)
T ss_dssp             SSEEEEEEESSSSHHHHHHHH-CHHH-HTTTSCCC-------CCCSSTTCEEEEEECGGGSCCSSCCSSCSGGGSCEEEE
T ss_pred             ceEEEEEEeCCCHHHHHHHHh-ChHH-HhhhcCCC-------CccccCCCEEEEEecCCCCcccccccccccCCCceeEE
Confidence            467888899999999999998 9999 78887531       12222333333333321              0112455


Q ss_pred             EEEEEeeCCCCeeEEEEEecCCCCcceeEEEEEEEEEEcCCCceEEEEEEEEEe--------chhhhhHHHHHHHHHhhC
Q 032152           70 HRIDELDKDNFRCKYTVIEGDMLGTILESIVYDVKFEASGNGGSICKVASEFHT--------KEKAMGLHKIVEAHLLAN  141 (146)
Q Consensus        70 Erl~~~D~~~~~~~y~i~eg~~~~~~~~~y~~t~~v~p~~~g~s~v~w~~~y~~--------~~~~~~~~k~~e~~l~~~  141 (146)
                      =++.++++.+ ++.|+...++...  .  -..++.+.|.++ +|.++.+.+-.+        ...+..++..|.+||-..
T Consensus        90 g~v~~~~p~~-rl~~tw~~~~~~~--~--s~v~~~l~~~g~-gT~ltl~~~~~~~~~~~~~~~~GW~~~L~~L~~~leg~  163 (183)
T d2k5ga1          90 HTLLRCEPPR-VLALTWGGGAGEA--P--SEVLFELSEAGE-QVRLVLTHTRLADRAAMLDVAGGWHAHLAVLAGKLAGQ  163 (183)
T ss_dssp             EEEEEEETTT-EEEEECCCCSSSS--C--CEEEEEEEECSS-SEEEEEEEECCCSHHHHHHHTTTTTTHHHHHHHHHHTS
T ss_pred             EEEEEEeCCe-EEEEEeccCCCCC--c--EEEEEEEEEcCC-cEEEEEEEecCCChhhHHHHhhhHHHHHHHHHHHHCCC
Confidence            6788888755 6778865443321  2  246788888764 688876655323        455667788888888654


Q ss_pred             C
Q 032152          142 P  142 (146)
Q Consensus       142 ~  142 (146)
                      +
T Consensus       164 ~  164 (183)
T d2k5ga1         164 A  164 (183)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Cholesterol-regulated Start protein 4 (Stard4).
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=0.0037  Score=43.56  Aligned_cols=117  Identities=4%  Similarity=-0.154  Sum_probs=69.9

Q ss_pred             EEEEEEEEecCCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEee--cCC--cce-eeEEEEEEeeCC
Q 032152            4 MRFEKEVSAAVAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFA--DGG--NFK-YAKHRIDELDKD   78 (146)
Q Consensus         4 ~~~~~e~~i~apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~--~g~--~~~-~~kErl~~~D~~   78 (146)
                      ..+..+..|++|++++++++. |... .+.|.|. +.++++++..+.-..+-...+.  ...  ..+ .+--|....+++
T Consensus        44 ~~~r~~~~i~~~~~~v~~~l~-d~~~-~~~Wd~~-~~~~~~le~~~~~~~i~~~~~~~~~~~~v~~RD~v~~~~~~~~~~  120 (199)
T d1jssa_          44 YLYKAQGVMDDVVNNVIDHIR-PGPW-RLDWDRL-MTSLDVLEHFEENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEE  120 (199)
T ss_dssp             EEEEEEEEESSCHHHHHHHHS-SSTT-HHHHCSS-EEEEEEEEECSTTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETT
T ss_pred             EEEEEEEEeCCCHHHHHHHHh-Chhh-hhhcccc-hheEEEEEEcCCCcEEEEEEEcccCCCCcCCcEEEEEEEEEEcCC
Confidence            457788899999999999998 9998 8999995 8888988753222333322222  111  111 222222222333


Q ss_pred             CCeeEEEEEecCC-CCcc--eeEEEEEEEEEEcCCC--ceEEEEEEEEEe
Q 032152           79 NFRCKYTVIEGDM-LGTI--LESIVYDVKFEASGNG--GSICKVASEFHT  123 (146)
Q Consensus        79 ~~~~~y~i~eg~~-~~~~--~~~y~~t~~v~p~~~g--~s~v~w~~~y~~  123 (146)
                      ...+........+ .+..  ...+.+.+.+.|.++|  +|.+++.+..++
T Consensus       121 ~~~~~~~~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp  170 (199)
T d1jssa_         121 GLLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQTDL  170 (199)
T ss_dssp             EEEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECEEC
T ss_pred             cEEEEEEecCCCCCCCceEEEEEeeeeEEEEEcCCCCCcEEEEEEEEcCC
Confidence            3222222222222 1111  2345577889997665  699999999888

>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: PA1206-like
domain: Hypothetical protein PA1206
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.03  E-value=0.022  Score=38.82  Aligned_cols=75  Identities=16%  Similarity=0.234  Sum_probs=53.0

Q ss_pred             EEEEEEEecCC---------HHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcceeeEEEEEEe
Q 032152            5 RFEKEVSAAVA---------PSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNFKYAKHRIDEL   75 (146)
Q Consensus         5 ~~~~e~~i~ap---------a~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~~~~kErl~~~   75 (146)
                      ++++-++||-|         .+++|+-+.....+ -..+.|+ +.+|++++.++ -+-.|.++|+++    .++|++. +
T Consensus         2 ~feHlv~IN~p~~p~~p~LTr~QlW~GL~lrar~-p~~Fv~~-l~~c~v~~~~~-~~~~Rel~fg~~----~v~e~Vt-l   73 (151)
T d2ffsa1           2 QFEHLVQVNDRTLVDLPVLDRLQLWEGLVCRARE-PQYFVVG-LERFEILVDDG-DRLHRRLYLPGL----VVEDEVV-L   73 (151)
T ss_dssp             CEEEEEECCCCCC---CCCCHHHHHHHHHHHHHC-GGGTCTT-CCEEEEEEECS-SEEEEEEEETTE----EEEEEEE-E
T ss_pred             cceEEEecCCCCCCCCCccCHHHHHHHHHHhhcC-Hhhcccc-cceEEEEEecC-CeEEEEEEECCc----eeEEEEE-E
Confidence            35667777765         46999988745555 5577775 99999987542 378899999765    7999976 4


Q ss_pred             eCCCCeeEEEEEe
Q 032152           76 DKDNFRCKYTVIE   88 (146)
Q Consensus        76 D~~~~~~~y~i~e   88 (146)
                      .+.. ++.|.+..
T Consensus        74 ~~~~-~v~f~~~a   85 (151)
T d2ffsa1          74 KAPD-SAHYSIKP   85 (151)
T ss_dssp             ETTT-EEEEEECC
T ss_pred             cCCc-EEEEEccc
Confidence            4444 55777643

>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Phosphatidylcholine transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.028  Score=38.85  Aligned_cols=115  Identities=9%  Similarity=0.067  Sum_probs=67.0

Q ss_pred             EEEEEEEEec-CCHHHHHHHhhhccccccccccccceeeEEEEcCCCCCCcEEEEEeecCCcc---eeeEE-EEEEeeCC
Q 032152            4 MRFEKEVSAA-VAPSRMFKAFFLEAHNFLPKLVPQAIKSVEILQGDGGAGSIKITNFADGGNF---KYAKH-RIDELDKD   78 (146)
Q Consensus         4 ~~~~~e~~i~-apa~~vw~~~~~d~~~~~p~~~P~~v~s~~~~eGdg~~Gsir~~~~~~g~~~---~~~kE-rl~~~D~~   78 (146)
                      ..+..+..|+ +|+++++.++. |... .++|.|. +.++.....++  -.+-.+.+..-.+.   ..+-. +....+++
T Consensus        45 ~~~k~~~~i~~~~~~~~~~~l~-d~~~-~~~Wd~~-~~~~~~~~~~~--~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~~  119 (203)
T d1ln1a_          45 YEYKVFGVLEDCSPTLLADIYM-DSDY-RKQWDQY-VKELYEQECNG--ETVVYWEVKYPFPMSNRDYVYLRQRRDLDME  119 (203)
T ss_dssp             EEEEEEEEETTSCHHHHHHHHH-CHHH-HHHHCTT-EEEEEEEEETT--EEEEEEEECCCTTSCCEEEEEEEEEEEECST
T ss_pred             EEEEEEEEEcCCCHHHHHHHHc-CHhH-hhhhccc-ceEEEEEccCC--cEEEEEEcccccccCCceEEEEEEEEEccCC
Confidence            4567788895 99999999998 9998 8999996 55554332222  12333333322221   12222 22223344


Q ss_pred             CCeeEEEEE---e-cCCC--Cc--ceeEEEEEEEEEEcCCCceEEEEEEEEEe
Q 032152           79 NFRCKYTVI---E-GDML--GT--ILESIVYDVKFEASGNGGSICKVASEFHT  123 (146)
Q Consensus        79 ~~~~~y~i~---e-g~~~--~~--~~~~y~~t~~v~p~~~g~s~v~w~~~y~~  123 (146)
                      ...+...+.   + .+.+  +.  ....+.+.+.++|.++++|.+++...-+|
T Consensus       120 ~~~~~v~~~~~~~~~~~p~~~~~vR~~~~~~~~~l~~~~~~~t~v~~~~~~Dp  172 (203)
T d1ln1a_         120 GRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNP  172 (203)
T ss_dssp             TCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECC
T ss_pred             CCeEEEEEeecccCCcCcccCCccccceeeEEEEEEecCCCcEEEEEEEEcCC
Confidence            333322211   1 1111  00  13356788999998888999999999888

>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: STAR domain
domain: Lipid transport domain of Mln64
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.036  Score=38.58  Aligned_cols=131  Identities=9%  Similarity=0.008  Sum_probs=78.3

Q ss_pred             EEEEEEecCCHHHHHH-HhhhccccccccccccceeeEEEEcC-CCCCCcEEEEEeec-C-Cc---ceeeEEEEEEeeCC
Q 032152            6 FEKEVSAAVAPSRMFK-AFFLEAHNFLPKLVPQAIKSVEILQG-DGGAGSIKITNFAD-G-GN---FKYAKHRIDELDKD   78 (146)
Q Consensus         6 ~~~e~~i~apa~~vw~-~~~~d~~~~~p~~~P~~v~s~~~~eG-dg~~Gsir~~~~~~-g-~~---~~~~kErl~~~D~~   78 (146)
                      +..+..+++|++++++ ++. |.+. .++|.|. +.++++++- +.. ..+-...+.. . .+   ...+.-|-...+++
T Consensus        54 ~k~~~~i~~~~~~v~~~~~~-d~e~-~~~Wd~~-~~~~~ile~~~~~-~~i~~~~~~~~~~~~vs~RD~v~~~~~~~~~~  129 (214)
T d1em2a_          54 FILKTFLPCPAELVYQEVIL-QPER-MVLWNKT-VTACQILQRVEDN-TLISYDVSAGAAGGVVSPRDFVNVRRIERRRD  129 (214)
T ss_dssp             EEEEEEESSCHHHHHHHTTT-CHHH-HTTTCTT-EEEEEEEEEETTT-EEEEEEEECCBTTTTBCCEEEEEEEEEEECSS
T ss_pred             EEEEEEEeCCHHHHHHHHHh-ChHH-HHHHHHH-HhheEEEEEcCCC-ceEEEEEecccCCCCCCCcEEEEEEEEEEcCC
Confidence            5678899999999986 666 8988 8999995 888888764 221 1222222221 1 11   13444454444555


Q ss_pred             CCeeEEEEEecCCCC--cc---eeEEEEEEEEEEcCC--CceEEEEEEEEEe-------------chhhhhHHHHHHHHH
Q 032152           79 NFRCKYTVIEGDMLG--TI---LESIVYDVKFEASGN--GGSICKVASEFHT-------------KEKAMGLHKIVEAHL  138 (146)
Q Consensus        79 ~~~~~y~i~eg~~~~--~~---~~~y~~t~~v~p~~~--g~s~v~w~~~y~~-------------~~~~~~~~k~~e~~l  138 (146)
                      ...+....+.-+..+  ..   ...+.+.+.+.|.++  ++|.++|.+..+|             .......++.|.+++
T Consensus       130 ~~~~~~~s~~~~~~p~~~~~vR~~~~~~~~~i~p~~~~~~~t~vt~~~~~Dp~G~iP~~lvn~~~~~~~~~~~~~Lrk~~  209 (214)
T d1em2a_         130 RYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSASNPRVCTFVWILNTDLKGRLPRYLIHQSLAATMFEFAFHLRQRI  209 (214)
T ss_dssp             EEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSSCTTCEEEEEEECEECCSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEeeccccccCCCCeEEEEEEeeeEEEEECCCCCCeEEEEEEEEeCCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence            544444433322111  11   134456777888554  5799999999998             233455667777776


Q ss_pred             hh
Q 032152          139 LA  140 (146)
Q Consensus       139 ~~  140 (146)
                      .+
T Consensus       210 ~k  211 (214)
T d1em2a_         210 SE  211 (214)
T ss_dssp             HH
T ss_pred             HH
Confidence            54