Citrus Sinensis ID: 032207

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISCS
Secondary Structure (PSIPRED)
cccccccEEEEEEEccccEEEEEcccccccccccHHHHHHHHHHHHHHcccccccEEEEEcccHHcccccccHHcccccccccccHHcHHHHHHHHccccEEEEEcccccHHHHHHHHHccEEEEccccccccccccEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEcccccEEEEEEccHHHHHHccHHHHHHHHHHHHHHHcccccEEEEEEccccEEEccccHHHHHcccHHHHHHHHHHHHHHHHHccccEEEEEcEEEEcHHHHHHHHccEEEEEcccEccccEEEcccccccc
Coil and Loop (DISEMBL)
mgqtksenlilvtrdpmgIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGsgrafcsgvdltsaedvfkgdvkdveTDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISCS
Flexible Loop (DISEMBL)
mgqtksenlilvtrdpmgiayVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTsaedvfkgdvkdvETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISCS
Low Complexity Region (SEG)
MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISCS
Disordered region (IsUnstruct)
********LILVTRDPMGIAYVTINRP*****************FKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKI***
Disordered Region (DISOPRED)
***TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC*
Disordered Region (DISEMBL)
MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISCS
Disordered Region (DISPRO)
****KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISCS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
Q1ZXF1	277	Probable enoyl-CoA hydrat	no	no	0.813	0.425	0.365	5e-17
Q52995	257	Probable enoyl-CoA hydrat	yes	no	0.841	0.474	0.362	7e-17
P64016	257	Probable enoyl-CoA hydrat	yes	no	0.834	0.470	0.373	2e-16
P64017	257	Probable enoyl-CoA hydrat	yes	no	0.834	0.470	0.373	2e-16
P34559	288	Probable enoyl-CoA hydrat	no	no	0.882	0.444	0.320	5e-16
A4YI89	259	3-hydroxypropionyl-coenzy	yes	no	0.806	0.451	0.330	1e-15
Q7U004	285	Probable enoyl-CoA hydrat	no	no	0.862	0.438	0.331	2e-15
O07137	257	Probable enoyl-CoA hydrat	yes	no	0.779	0.439	0.350	5e-15
P52046	261	3-hydroxybutyryl-CoA dehy	yes	no	0.779	0.432	0.350	5e-15
O53163	285	Probable enoyl-CoA hydrat	no	no	0.862	0.438	0.324	6e-15

>sp|Q1ZXF1|ECHM_DICDI Probable enoyl-CoA hydratase, mitochondrial OS=Dictyostelium discoideum GN=echs1 PE=3 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 75/123 (60%), Gaps = 5/123 (4%)

Query: 19  IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDV 78
           +  VT+NRPKSLN+L+  +++++  A K   +D+ V  II++GS +AF +G D+   E V
Sbjct: 34  VGLVTLNRPKSLNALSDGLISEINSAVKLFQEDKDVGSIIITGSEKAFAAGADIKEMEKV 93

Query: 79  FKGDVKDVETDTVAQME---RCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTH 135
              D  +   D +AQ     + RKPII A++G+A+  G E+A+ CD+++A + A F    
Sbjct: 94  TLPDAYN--NDLLAQWHDLTKIRKPIIAAVNGYALGGGCELAMMCDIIIAGEKAVFGQPE 151

Query: 136 ARL 138
            +L
Sbjct: 152 IKL 154

Straight-chain enoyl-CoA thioesters from C4 up to at least C16 are processed, although with decreasing catalytic rate.
Dictyostelium discoideum (taxid: 44689)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 7

>sp|Q52995|ECHH_RHIME Probable enoyl-CoA hydratase OS=Rhizobium meliloti (strain 1021) GN=fadB1 PE=3 SV=2

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 78/127 (61%), Gaps = 5/127 (3%)

Query: 7   ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAF 66
           E L++ T+  +G+  +T+NRP++LN+L   +M ++  A K+ D D +V  I+L+GS +AF
Sbjct: 4   ETLLVETQGRVGL--ITLNRPQALNALNAVLMRELDAALKAFDADRAVGAIVLAGSEKAF 61

Query: 67  CSGVDLTSAE--DVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLV 124
            +G D+   +  D   G + D        +   RKP+I A+SGFA+  G E+A+ CD ++
Sbjct: 62  AAGADIKEMQGLDFVDGYLADF-LGGWEHVANARKPMIAAVSGFALGGGCELAMMCDFII 120

Query: 125 AAKGAKF 131
           A++ AKF
Sbjct: 121 ASETAKF 127

Could possibly oxidize fatty acids using specific components.

Rhizobium meliloti (strain 1021) (taxid: 266834)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 7

>sp|P64016|ECHA8_MYCTU Probable enoyl-CoA hydratase echA8 OS=Mycobacterium tuberculosis GN=echA8 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 2/123 (1%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           ILV RD   +  +T+NRP++LN+L   +M ++  A   LD D  +  II++GS +AF +G
Sbjct: 6   ILVERDQR-VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAG 64

Query: 70  VDLTSAEDVFKGDVKDVE-TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG 128
            D+    D+   D    +   T  ++   R P I A++G+A+  G E+A+ CDVL+AA  
Sbjct: 65  ADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADT 124

Query: 129 AKF 131
           AKF
Sbjct: 125 AKF 127

Could possibly oxidize fatty acids using specific components.

Mycobacterium tuberculosis (taxid: 1773)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 7

>sp|P64017|ECHA8_MYCBO Probable enoyl-CoA hydratase echA8 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=echA8 PE=3 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 2/123 (1%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           ILV RD   +  +T+NRP++LN+L   +M ++  A   LD D  +  II++GS +AF +G
Sbjct: 6   ILVERDQR-VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAG 64

Query: 70  VDLTSAEDVFKGDVKDVE-TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG 128
            D+    D+   D    +   T  ++   R P I A++G+A+  G E+A+ CDVL+AA  
Sbjct: 65  ADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADT 124

Query: 129 AKF 131
           AKF
Sbjct: 125 AKF 127

Could possibly oxidize fatty acids using specific components.

Mycobacterium bovis (taxid: 1765)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 7

>sp|P34559|ECHM_CAEEL Probable enoyl-CoA hydratase, mitochondrial OS=Caenorhabditis elegans GN=ech-6 PE=1 SV=1

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 76/131 (58%), Gaps = 3/131 (2%)

Query: 4   TKSENLILVTR--DPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61
           +K+  +I + +  +   +A + +NRPK+LN+L   +M ++A A + LD D+SV  I+++G
Sbjct: 28  SKAPEMIKIEKVGEKQNVALIKLNRPKALNALCAQLMTELADALEVLDTDKSVGAIVITG 87

Query: 62  SGRAFCSGVDLTS-AEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALAC 120
           S RAF +G D+     + F              +   +KP+I A++GFA+  G E+A+ C
Sbjct: 88  SERAFAAGADIKEMTNNEFATTFSGSFLSNWTAVSDVKKPVIAAVNGFALGGGNELAMMC 147

Query: 121 DVLVAAKGAKF 131
           D++ A + A+F
Sbjct: 148 DIIYAGEKARF 158

Caenorhabditis elegans (taxid: 6239)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 7

>sp|A4YI89|HPCD_METS5 3-hydroxypropionyl-coenzyme A dehydratase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_2001 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 73/124 (58%), Gaps = 7/124 (5%)

Query: 13  TRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDL 72
           T+    + ++T+NRP  LN+L   ++ ++ +A    + D  + VII++G G+AFC+G D+
Sbjct: 8   TKKEGNLFWITLNRPDKLNALNAKLLEELDRAVSQAESDPEIRVIIITGKGKAFCAGADI 67

Query: 73  T-----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAK 127
           T     +  + +K   K  E   + ++E   KP I  I+G+A+  G E+ALACD+ +AA+
Sbjct: 68  TQFNQLTPAEAWKFSKKGRE--IMDKIEALSKPTIAMINGYALGGGLELALACDIRIAAE 125

Query: 128 GAKF 131
            A+ 
Sbjct: 126 EAQL 129

Plays a role in autotrophic carbon fixation via the 3-hydroxypropionate/4-hydroxybutyrate cycle. Catalyzes the reversible dehydration of 3-hydroxypropionyl-CoA to form acryloyl-CoA, and the reversible dehydration of (S)-3-hydroxybutyryl-CoA to form crotonyl-CoA. Inactive towards (R)-3-hydroxybutyryl-CoA.

Metallosphaera sedula (strain ATCC 51363 / DSM 5348) (taxid: 399549)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 6

>sp|Q7U004|ECH12_MYCBO Probable enoyl-CoA hydratase echA12 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=echA12 PE=3 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 20/145 (13%)

Query: 2   GQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61
           G   + +L+LV      IA +T+NRP+ +NS+   +M  + +A   +  D SV V++L+G
Sbjct: 12  GYRSTVSLVLVEHPRPEIAQITLNRPERMNSMAFDVMVPLKEALAQVSYDNSVRVVVLTG 71

Query: 62  SGRAFCSGVDLTSAEDVFKGDVKDVET---------------DTVAQMERCRKPIIGAIS 106
           +GR F SG D  SA     G V  VE                D +  + R  +P+I A++
Sbjct: 72  AGRGFSSGADHKSA-----GVVPHVENLTRPTYALRSMELLDDVILMLRRLHQPVIAAVN 126

Query: 107 GFAVTAGFEIALACDVLVAAKGAKF 131
           G A+  G  +ALA D+ VA+  A F
Sbjct: 127 GPAIGGGLCLALAADIRVASSSAYF 151

Could possibly oxidize fatty acids using specific components.

Mycobacterium bovis (taxid: 1765)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 7

>sp|O07137|ECHA8_MYCLE Probable enoyl-CoA hydratase echA8 OS=Mycobacterium leprae (strain TN) GN=echA8 PE=3 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 67/114 (58%), Gaps = 1/114 (0%)

Query: 19  IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDV 78
           +  +T+NRP++LN+L   MM ++  A K LD D  V  I+++GS + F +G D+     +
Sbjct: 14  VGIITLNRPQALNALNSQMMNEITNAAKELDIDPDVGAILITGSPKVFAAGADIKEMASL 73

Query: 79  FKGDVKDVE-TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
              D  D +      ++   R P+I A++G+A+  G E+A+ CD+L+AA  AKF
Sbjct: 74  TFTDAFDADFFSAWGKLAAVRTPMIAAVAGYALGGGCELAMMCDLLIAADTAKF 127

Could possibly oxidize fatty acids using specific components.

Mycobacterium leprae (taxid: 1769)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 7

>sp|P52046|CRT_CLOAB 3-hydroxybutyryl-CoA dehydratase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=crt PE=3 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 74/117 (63%), Gaps = 4/117 (3%)

Query: 19  IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAED 77
           +A VTINRPK+LN+L    + +M      ++ D  VL +IL+G+G ++F +G D++  ++
Sbjct: 14  VAVVTINRPKALNALNSDTLKEMDYVIGEIENDSEVLAVILTGAGEKSFVAGADISEMKE 73

Query: 78  V--FKGDVKDVETDTV-AQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
           +   +G    +  + V  ++E   KP+I A++GFA+  G EIA++CD+ +A+  A+F
Sbjct: 74  MNTIEGRKFGILGNKVFRRLELLEKPVIAAVNGFALGGGCEIAMSCDIRIASSNARF 130

Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 5

EC: 5

>sp|O53163|ECH12_MYCTU Probable enoyl-CoA hydratase echA12 OS=Mycobacterium tuberculosis GN=echA12 PE=3 SV=1

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 20/145 (13%)

Query: 2   GQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61
           G   + +L+LV      IA +T+NRP+ +NS+   +M  + +A   +  D SV V++L+G
Sbjct: 12  GYRSTVSLVLVEHPRPEIAQITLNRPERMNSMAFDVMVPLKEALAQVSYDNSVRVVVLTG 71

Query: 62  SGRAFCSGVDLTSAEDVFKGDVKDVET---------------DTVAQMERCRKPIIGAIS 106
           +GR F  G D  SA     G V  VE                D +  + R  +P+I A++
Sbjct: 72  AGRGFSPGADHKSA-----GVVPHVENLTRPTYALRSMELLDDVILMLRRLHQPVIAAVN 126

Query: 107 GFAVTAGFEIALACDVLVAAKGAKF 131
           G A+  G  +ALA D+ VA+  A F
Sbjct: 127 GPAIGGGLCLALAADIRVASSSAYF 151

Could possibly oxidize fatty acids using specific components.

Mycobacterium tuberculosis (taxid: 1773)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
449462144	264	PREDICTED: 3-hydroxybutyryl-CoA dehydrat	0.951	0.522	0.811	8e-61
449523255	264	PREDICTED: 3-hydroxybutyryl-CoA dehydrat	0.951	0.522	0.811	8e-61
224108744	264	predicted protein [Populus trichocarpa]	0.951	0.522	0.789	3e-57
388505276	261	unknown [Medicago truncatula]	0.917	0.509	0.804	3e-57
118489327	264	unknown [Populus trichocarpa x Populus d	0.951	0.522	0.782	3e-57
357479003	261	3-hydroxybutyryl-CoA dehydratase [Medica	0.917	0.509	0.804	4e-57
6469117	264	putative enoyl CoA hydratase [Cicer arie	0.951	0.522	0.768	4e-57
357479015	165	Enoyl-CoA hydratase echA6 [Medicago trun	0.924	0.812	0.798	1e-56
225431978	266	PREDICTED: 3-hydroxypropionyl-coenzyme A	0.931	0.507	0.770	6e-56
255642167	264	unknown [Glycine max]	0.910	0.5	0.795	1e-55

>gi|449462144|ref|XP_004148801.1| PREDICTED: 3-hydroxybutyryl-CoA dehydratase-like [Cucumis sativus]

 Score =  238 bits (606), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 112/138 (81%), Positives = 127/138 (92%)

Query: 1   MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60
           M ++ SENLILV R+  GIA++TINRPKSLNSLT+ MMAD+A AFKSLD+D+SV VIILS
Sbjct: 1   MDRSSSENLILVNRESNGIAFITINRPKSLNSLTKHMMADLAHAFKSLDRDDSVRVIILS 60

Query: 61  GSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALAC 120
           GSGRAFCSGVDLT+AEDVFKGDVKDVE+D VAQME CRKPIIGAI+GFA+TAGFEIALAC
Sbjct: 61  GSGRAFCSGVDLTAAEDVFKGDVKDVESDPVAQMELCRKPIIGAIAGFAITAGFEIALAC 120

Query: 121 DVLVAAKGAKFIDTHARL 138
           D+L+AAKGAKFIDTHAR 
Sbjct: 121 DILIAAKGAKFIDTHARF 138

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523255|ref|XP_004168639.1| PREDICTED: 3-hydroxybutyryl-CoA dehydratase-like [Cucumis sativus]

 Score =  238 bits (606), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 112/138 (81%), Positives = 127/138 (92%)

Query: 1   MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60
           M ++ SENLILV R+  GIA++TINRPKSLNSLT+ MMAD+A AFKSLD+D+SV VIILS
Sbjct: 1   MDRSSSENLILVNRESNGIAFITINRPKSLNSLTKHMMADLAHAFKSLDRDDSVRVIILS 60

Query: 61  GSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALAC 120
           GSGRAFCSGVDLT+AEDVFKGDVKDVE+D VAQME CRKPIIGAI+GFA+TAGFEIALAC
Sbjct: 61  GSGRAFCSGVDLTAAEDVFKGDVKDVESDPVAQMELCRKPIIGAIAGFAITAGFEIALAC 120

Query: 121 DVLVAAKGAKFIDTHARL 138
           D+L+AAKGAKFIDTHAR 
Sbjct: 121 DILIAAKGAKFIDTHARF 138

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108744|ref|XP_002314953.1| predicted protein [Populus trichocarpa] gi|222863993|gb|EEF01124.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 109/138 (78%), Positives = 122/138 (88%)

Query: 1   MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60
           M QT+ ENLILVTRD  GIA +TINRPKSLNSLTR MM  +A+   +L KDESV VIIL+
Sbjct: 1   MDQTRIENLILVTRDRNGIATITINRPKSLNSLTRPMMVRLARQINALGKDESVRVIILT 60

Query: 61  GSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALAC 120
           GSGRAFCSGVDLT+AE VFKGDVKDVETDTVAQME C+KPIIGAI+GFAVTAGFEIALAC
Sbjct: 61  GSGRAFCSGVDLTAAEKVFKGDVKDVETDTVAQMELCKKPIIGAINGFAVTAGFEIALAC 120

Query: 121 DVLVAAKGAKFIDTHARL 138
           D+L+AAKGAKF+DTH+R 
Sbjct: 121 DILIAAKGAKFMDTHSRF 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505276|gb|AFK40704.1| unknown [Medicago truncatula]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 107/133 (80%), Positives = 119/133 (89%)

Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
           S+ LILV R+P GIA VTINRP SLNSLTR+M  D+AQAFKSLD+DESV VIIL+G+GR+
Sbjct: 3   SQKLILVNREPKGIAVVTINRPDSLNSLTRAMNVDLAQAFKSLDRDESVRVIILTGTGRS 62

Query: 66  FCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVA 125
           FCSGVDLT+AEDVFKGDVKD E+D V QMERC KPIIGAI GFAVTAGFEIALACD+LVA
Sbjct: 63  FCSGVDLTAAEDVFKGDVKDPESDPVVQMERCHKPIIGAIKGFAVTAGFEIALACDILVA 122

Query: 126 AKGAKFIDTHARL 138
           AKGAKF+DTHAR 
Sbjct: 123 AKGAKFMDTHARF 135

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489327|gb|ABK96468.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 108/138 (78%), Positives = 123/138 (89%)

Query: 1   MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60
           M QT+ ENLILVTRD  GIA +TINRPKSLNSLTR MM  +A+   +L KDESV VIIL+
Sbjct: 1   MDQTRIENLILVTRDRNGIATITINRPKSLNSLTRPMMVRLARQINALGKDESVRVIILT 60

Query: 61  GSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALAC 120
           GSGRAFCSGVDLT+AE+VFKGDVKDVETDTVAQME C+KPIIGAI+GFAVTAGFEIALAC
Sbjct: 61  GSGRAFCSGVDLTAAENVFKGDVKDVETDTVAQMELCKKPIIGAINGFAVTAGFEIALAC 120

Query: 121 DVLVAAKGAKFIDTHARL 138
           D+L+AA+GAKF+DTH+R 
Sbjct: 121 DILIAARGAKFMDTHSRF 138

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479003|ref|XP_003609787.1| 3-hydroxybutyryl-CoA dehydratase [Medicago truncatula] gi|355510842|gb|AES91984.1| 3-hydroxybutyryl-CoA dehydratase [Medicago truncatula]

 Score =  225 bits (574), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 107/133 (80%), Positives = 119/133 (89%)

Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
           S+ LILV R+P GIA VTINRP SLNSLTR+M  D+AQAFKSLD+DESV VIIL+G+GR+
Sbjct: 3   SQKLILVNREPKGIAVVTINRPDSLNSLTRAMNVDLAQAFKSLDRDESVRVIILTGTGRS 62

Query: 66  FCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVA 125
           FCSGVDLT+AEDVFKGDVKD E+D V QMERC KPIIGAI GFAVTAGFEIALACD+LVA
Sbjct: 63  FCSGVDLTAAEDVFKGDVKDPESDPVVQMERCHKPIIGAIKGFAVTAGFEIALACDILVA 122

Query: 126 AKGAKFIDTHARL 138
           AKGAKF+DTHAR 
Sbjct: 123 AKGAKFMDTHARF 135

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6469117|emb|CAB61740.1| putative enoyl CoA hydratase [Cicer arietinum]

 Score =  225 bits (574), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 106/138 (76%), Positives = 121/138 (87%)

Query: 1   MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60
           M Q+  + LILV RDP GIA VTINRP SLNSLTR+M  D+AQAFKSLD+DE+V VIIL+
Sbjct: 1   MDQSSPQKLILVNRDPNGIATVTINRPDSLNSLTRAMNVDLAQAFKSLDRDEAVRVIILT 60

Query: 61  GSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALAC 120
           GSGR+FCSGVDLT+AED+FKGDVKD E+D V QMERCRKPIIGAI GFAVTAGFEIALAC
Sbjct: 61  GSGRSFCSGVDLTAAEDIFKGDVKDPESDPVVQMERCRKPIIGAIRGFAVTAGFEIALAC 120

Query: 121 DVLVAAKGAKFIDTHARL 138
           D++VA KG+KF+DTHAR 
Sbjct: 121 DIVVAVKGSKFMDTHARF 138

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479015|ref|XP_003609793.1| Enoyl-CoA hydratase echA6 [Medicago truncatula] gi|355510848|gb|AES91990.1| Enoyl-CoA hydratase echA6 [Medicago truncatula]

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 107/134 (79%), Positives = 120/134 (89%)

Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
           S+ LILV R+P GIA VTINRP SLNSLTR+M  D+AQAFKSLD+DESV VIIL+G+GR+
Sbjct: 3   SQKLILVNREPKGIAVVTINRPDSLNSLTRAMNVDLAQAFKSLDRDESVRVIILTGTGRS 62

Query: 66  FCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVA 125
           FCSGVDLT+AEDVFKGDVKD E+D V QMERC KPIIGAI GFAVTAGFEIALACD+LVA
Sbjct: 63  FCSGVDLTAAEDVFKGDVKDPESDPVVQMERCHKPIIGAIKGFAVTAGFEIALACDILVA 122

Query: 126 AKGAKFIDTHARLV 139
           AKGAKF+DTHAR +
Sbjct: 123 AKGAKFMDTHARFL 136

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431978|ref|XP_002278726.1| PREDICTED: 3-hydroxypropionyl-coenzyme A dehydratase [Vitis vinifera] gi|296083235|emb|CBI22871.3| unnamed protein product [Vitis vinifera]

 Score =  221 bits (564), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 104/135 (77%), Positives = 118/135 (87%)

Query: 4   TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG 63
           + SE LILV R+P GIA+VTINRP+ LNSLTR MM D+A+AFKSLD D+ V VI+++GSG
Sbjct: 5   SSSEGLILVNREPSGIAFVTINRPQLLNSLTRPMMVDLARAFKSLDADDLVRVIVITGSG 64

Query: 64  RAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVL 123
           RAFCSGVDLT+AE+VFKGDVKDVE D V QMERCRKPI+GAI GFAVTAGFEIALACD+L
Sbjct: 65  RAFCSGVDLTAAEEVFKGDVKDVEIDPVVQMERCRKPIVGAIGGFAVTAGFEIALACDIL 124

Query: 124 VAAKGAKFIDTHARL 138
           VA KG KFIDTHAR 
Sbjct: 125 VAVKGTKFIDTHARF 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255642167|gb|ACU21348.1| unknown [Glycine max]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 105/132 (79%), Positives = 116/132 (87%)

Query: 7   ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAF 66
           E LILV R+P G+A VTINRP SLNSLTR MM D+AQAFK LD+DE V VIIL+GSGR+F
Sbjct: 7   EKLILVNREPNGVALVTINRPGSLNSLTRPMMVDLAQAFKRLDRDELVRVIILTGSGRSF 66

Query: 67  CSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAA 126
           CSGVDLT+AEDVFKGDVKD E+D V QME CRKPIIGAI GFAVTAGFEIALACD+LVAA
Sbjct: 67  CSGVDLTAAEDVFKGDVKDPESDPVVQMELCRKPIIGAIRGFAVTAGFEIALACDILVAA 126

Query: 127 KGAKFIDTHARL 138
           KG+KF+DTHAR 
Sbjct: 127 KGSKFMDTHARF 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
TAIR|locus:2130265	265	ECHIA "enoyl-CoA hydratase/iso	0.944	0.516	0.744	8.3e-51
DICTYBASE|DDB_G0293354	297	DDB_G0293354 "enoyl-CoA hydrat	0.868	0.424	0.384	6.5e-19
UNIPROTKB|Q0C4P8	260	HNE_0566 "Enoyl-CoA hydratase"	0.834	0.465	0.373	3.6e-18
UNIPROTKB|P71621	249	echA16 "Probable enoyl-CoA hyd	0.868	0.506	0.360	5.8e-18
UNIPROTKB|Q0C164	258	HNE_1827 "Enoyl-CoA hydratase"	0.813	0.457	0.370	5.8e-18
UNIPROTKB|P64016	257	echA8 "Probable enoyl-CoA hydr	0.834	0.470	0.373	1.6e-17
DICTYBASE|DDB_G0285071	277	echs1 "enoyl-CoA hydratase" [D	0.806	0.422	0.373	3.2e-17
TIGR_CMR|CHY_1736	266	CHY_1736 "enoyl-CoA hydratase/	0.903	0.492	0.347	5.3e-17
TIGR_CMR|CPS_1430	255	CPS_1430 "enoyl-CoA hydratase/	0.834	0.474	0.335	6.7e-17
WB|WBGene00001156	256	ech-7 [Caenorhabditis elegans	0.751	0.425	0.372	6.7e-17

TAIR|locus:2130265 ECHIA "enoyl-CoA hydratase/isomerase A" [Arabidopsis thaliana (taxid:3702)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 102/137 (74%), Positives = 120/137 (87%)

Query:     1 MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60
             M QT SENLI V ++  GIA +TINRPKSLNSLTR+MM D+A+AFK +D DESV V+I +
Sbjct:     1 MDQTVSENLIQVKKESGGIAVITINRPKSLNSLTRAMMVDLAKAFKDMDSDESVQVVIFT 60

Query:    61 GSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALAC 120
             GSGR+FCSGVDLT+AE VFKGDVKD ETD V QMER RKPIIGAI+GFA+TAGFE+ALAC
Sbjct:    61 GSGRSFCSGVDLTAAESVFKGDVKDPETDPVVQMERLRKPIIGAINGFAITAGFELALAC 120

Query:   121 DVLVAAKGAKFIDTHAR 137
             D+LVA++GAKF+DTHAR
Sbjct:   121 DILVASRGAKFMDTHAR 137

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

DICTYBASE|DDB_G0293354 DDB_G0293354 "enoyl-CoA hydratase" [Dictyostelium discoideum (taxid:44689)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 50/130 (38%), Positives = 77/130 (59%)

Query:     5 KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG- 63
             K E +++  +D   IA VT+NRPK+LNS    M  ++    + LDKDE V  I+L+GSG 
Sbjct:    39 KFETILIEIKDE-SIALVTLNRPKALNSFNYQMSKELLDCCRLLDKDERVKCIVLTGSGT 97

Query:    64 RAFCSGVDLTS--AEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACD 121
             R+F  G D+    + D+     K    D +  ++   KPII A++G+A+  G E+A+ CD
Sbjct:    98 RSFACGADIKEMVSHDMVYMMKKGQLIDNLCDLKEIEKPIIAAVNGYALGGGCEVAMICD 157

Query:   122 VLVAAKGAKF 131
             ++VAA+ A F
Sbjct:   158 IIVAAENAVF 167

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

GO:0004300 "enoyl-CoA hydratase activity" evidence=ISS

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q0C4P8 HNE_0566 "Enoyl-CoA hydratase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 46/123 (37%), Positives = 73/123 (59%)

Query:    18 GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED 77
             G A + +NR +SLN+L+  MM ++ QA    + D+++L IIL+G+ RAF  G D+   + 
Sbjct:    15 GYALIQMNRAESLNALSEEMMTELTQAIDRFEADDAILCIILTGTKRAFSGGADVREIQS 74

Query:    78 -VF-KGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTH 135
               F +   +D  T    +  R RKPII A+ G+A+  G E+A+ CD+++AA  A+F    
Sbjct:    75 KTFPQSYYEDFITRNWERAARARKPIIAAVGGYAIGGGCELAMMCDIILAADNARFGQPE 134

Query:   136 ARL 138
              RL
Sbjct:   135 IRL 137

GO:0005739 "mitochondrion" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

UNIPROTKB|P71621 echA16 "Probable enoyl-CoA hydratase EchA16 (Enoyl hydrase) (Unsaturated acyl-CoA hydratase) (Crotonase)" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 48/133 (36%), Positives = 82/133 (61%)

Query:     6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
             +++++L+  D   +  +T+NRP+S N+L+ ++      A    + D+ + V+IL+G+   
Sbjct:     2 TDDILLIDTDER-VRTLTLNRPQSRNALSAALRDRFFAALADAEADDDIDVVILTGADPV 60

Query:    66 FCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVA 125
             FC+G+DL   E   +  + D+     A      KP+IGAI+G AVT G E+AL CD+L+A
Sbjct:    61 FCAGLDLK--ELAGQTALPDISPRWPAMT----KPVIGAINGAAVTGGLELALYCDILIA 114

Query:   126 AKGAKFIDTHARL 138
             ++ A+F DTHAR+
Sbjct:   115 SEHARFADTHARV 127

GO:0005576 "extracellular region" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q0C164 HNE_1827 "Enoyl-CoA hydratase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 46/124 (37%), Positives = 79/124 (63%)

Query:    12 VTRDPMG-IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGV 70
             +T +  G +A VT+NRP +LN+L   +M ++   F ++D+++ + V +L+G+GRAF +G 
Sbjct:     7 ITFEQKGRVALVTLNRPDALNALNAEVMQEVVDCFAAIDRNKDIAVSVLTGAGRAFAAGA 66

Query:    71 DLTSAEDVFKGDVKDVETDTVAQMER---CRKPIIGAISGFAVTAGFEIALACDVLVAAK 127
             D+   +     D+  VE D  A  +R    RKP+I A++GFA+  G E+A+ CD+++A+ 
Sbjct:    67 DIKEMQPQSFSDMY-VE-DYFAGWDRFAASRKPVIAAVNGFALGGGCELAMMCDLIIASD 124

Query:   128 GAKF 131
              AKF
Sbjct:   125 KAKF 128

GO:0005739 "mitochondrion" evidence=ISS

GO:0006635 "fatty acid beta-oxidation" evidence=ISS

UNIPROTKB|P64016 echA8 "Probable enoyl-CoA hydratase echA8" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 46/123 (37%), Positives = 72/123 (58%)

Query:    10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
             ILV RD   +  +T+NRP++LN+L   +M ++  A   LD D  +  II++GS +AF +G
Sbjct:     6 ILVERDQR-VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAG 64

Query:    70 VDLTSAEDVFKGDVKDVET-DTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG 128
              D+    D+   D    +   T  ++   R P I A++G+A+  G E+A+ CDVL+AA  
Sbjct:    65 ADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADT 124

Query:   129 AKF 131
             AKF
Sbjct:   125 AKF 127

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

DICTYBASE|DDB_G0285071 echs1 "enoyl-CoA hydratase" [Dictyostelium discoideum (taxid:44689)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 46/123 (37%), Positives = 77/123 (62%)

Query:    13 TRDPMG-IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVD 71
             T +  G +  VT+NRPKSLN+L+  +++++  A K   +D+ V  II++GS +AF +G D
Sbjct:    27 TTEKKGRVGLVTLNRPKSLNALSDGLISEINSAVKLFQEDKDVGSIIITGSEKAFAAGAD 86

Query:    72 LTSAEDVFKGDVKDVETDTVAQ---MERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG 128
             +   E V   D  +   D +AQ   + + RKPII A++G+A+  G E+A+ CD+++A + 
Sbjct:    87 IKEMEKVTLPDAYN--NDLLAQWHDLTKIRKPIIAAVNGYALGGGCELAMMCDIIIAGEK 144

Query:   129 AKF 131
             A F
Sbjct:   145 AVF 147

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004300 "enoyl-CoA hydratase activity" evidence=IEA;ISS

GO:0006635 "fatty acid beta-oxidation" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=IEA;ISS

GO:0016829 "lyase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TIGR_CMR|CHY_1736 CHY_1736 "enoyl-CoA hydratase/isomerase family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 49/141 (34%), Positives = 81/141 (57%)

Query:     6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
             ++ ++L  ++  GIA +T+NRP+ +N+ T  M+       +   +D++V VI+L+GSG+A
Sbjct:     3 AQEILLEKKE--GIATITLNRPEKMNAFTLEMIDRWVNFLQECQQDDAVKVIVLTGSGKA 60

Query:    66 FCSGVDLTSAEDVFKGDV--------KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIA 117
             FC+G DL   E   K           K ++   +   E   KP+I AI+G AV AG ++A
Sbjct:    61 FCTGGDLELLEKTAKSTPLASKNFIWKHIQKIPLLLWEVIDKPVIAAINGTAVGAGLDMA 120

Query:   118 LACDVLVAAKGAKFIDTHARL 138
             L CD+  AA+ A+F + + RL
Sbjct:   121 LMCDLRFAAESARFSEGYIRL 141

GO:0003824 "catalytic activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=ISS

TIGR_CMR|CPS_1430 CPS_1430 "enoyl-CoA hydratase/isomerase family protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 43/128 (33%), Positives = 79/128 (61%)

Query:     7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAF 66
             E +++  R+ +G+  +T++RPKSLN+L+R +  ++    K+ D D+++  I+++GS RAF
Sbjct:     2 ETILVERRERVGM--ITLHRPKSLNALSRQLAREVVDTLKTFDADDNIGAIVITGSARAF 59

Query:    67 CSGVDLTSAEDVFKGDVKDVETDTVAQMERCR---KPIIGAISGFAVTAGFEIALACDVL 123
              +G D+    ++   +      D  A  +  R   KPII A+SG+A+  G E+AL CD +
Sbjct:    60 AAGADIEEMANLTYAEFYC--DDIFAPWDELRSISKPIIAAVSGYALGGGCELALMCDFI 117

Query:   124 VAAKGAKF 131
             +A++ A+F
Sbjct:   118 IASEDAQF 125

GO:0003824 "catalytic activity" evidence=ISS

GO:0009062 "fatty acid catabolic process" evidence=ISS

WB|WBGene00001156 ech-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 44/118 (37%), Positives = 74/118 (62%)

Query:    19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAE-- 76
             +A +T+NRP +LN+L R +M ++++    ++KD+S  VI+L+GS +AF +G D+      
Sbjct:    13 VALITLNRPSALNALCRELMLELSENLLKVEKDQSYHVIVLTGSEKAFAAGADIKEMAKL 72

Query:    77 ---DVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
                DVF+ D      DT++ +    KP+I A++GFA+  G E+AL CD++ A + A F
Sbjct:    73 EFADVFENDYF-TNWDTLSHIT---KPVIAAVNGFALGGGTELALMCDIVYAGENAIF 126

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	145
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	3e-84
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	2e-43
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	9e-40
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	6e-35
PRK05862	257	PRK05862, PRK05862, enoyl-CoA hydratase; Provision	1e-27
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	2e-27
PRK08260	296	PRK08260, PRK08260, enoyl-CoA hydratase; Provision	3e-27
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	4e-27
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	5e-27
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	1e-26
PRK07327	268	PRK07327, PRK07327, enoyl-CoA hydratase; Provision	2e-26
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	3e-25
PRK08252	254	PRK08252, PRK08252, enoyl-CoA hydratase; Provision	4e-24
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	4e-24
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	8e-24
PRK07799	263	PRK07799, PRK07799, enoyl-CoA hydratase; Provision	3e-23
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	6e-23
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	2e-22
PRK08272	302	PRK08272, PRK08272, enoyl-CoA hydratase; Provision	3e-22
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	3e-22
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	3e-22
PRK05864	276	PRK05864, PRK05864, enoyl-CoA hydratase; Provision	5e-22
PRK08259	254	PRK08259, PRK08259, enoyl-CoA hydratase; Provision	1e-21
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	2e-21
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	2e-21
PRK06072	248	PRK06072, PRK06072, enoyl-CoA hydratase; Provision	4e-21
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	7e-21
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	1e-20
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	2e-20
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	2e-20
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	1e-19
PRK07854	243	PRK07854, PRK07854, enoyl-CoA hydratase; Provision	3e-19
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	3e-19
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	4e-19
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	7e-19
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	7e-19
PLN02921	327	PLN02921, PLN02921, naphthoate synthase	2e-18
PRK07396	273	PRK07396, PRK07396, dihydroxynaphthoic acid synthe	5e-18
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	2e-17
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	2e-17
PRK06563	255	PRK06563, PRK06563, enoyl-CoA hydratase; Provision	4e-17
COG0447	282	COG0447, MenB, Dihydroxynaphthoic acid synthase [C	1e-16
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	1e-16
PRK06143	256	PRK06143, PRK06143, enoyl-CoA hydratase; Provision	2e-16
PRK08290	288	PRK08290, PRK08290, enoyl-CoA hydratase; Provision	9e-16
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	1e-15
PRK07110	249	PRK07110, PRK07110, polyketide biosynthesis enoyl-	1e-15
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	2e-15
TIGR01929	259	TIGR01929, menB, naphthoate synthase (dihydroxynap	2e-15
PRK05980	260	PRK05980, PRK05980, enoyl-CoA hydratase; Provision	6e-15
PRK09120	275	PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata	8e-15
PRK07938	249	PRK07938, PRK07938, enoyl-CoA hydratase; Provision	2e-14
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	3e-14
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	3e-13
TIGR03210	256	TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd	4e-13
PRK08150	255	PRK08150, PRK08150, enoyl-CoA hydratase; Provision	9e-13
TIGR03200	360	TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-car	3e-12
PRK12478	298	PRK12478, PRK12478, enoyl-CoA hydratase; Provision	4e-12
PRK05617	342	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol	5e-12
PLN02874	379	PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol	1e-11
PLN02988	381	PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol	3e-11
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	4e-11
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	7e-11
PRK06023	251	PRK06023, PRK06023, enoyl-CoA hydratase; Provision	1e-10
PRK07260	255	PRK07260, PRK07260, enoyl-CoA hydratase; Provision	4e-10
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	4e-10
PRK09076	258	PRK09076, PRK09076, enoyl-CoA hydratase; Provision	6e-10
PRK05869	222	PRK05869, PRK05869, enoyl-CoA hydratase; Validated	6e-10
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	1e-09
PLN02851	407	PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol	2e-09
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	9e-09
PLN02157	401	PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol	8e-08
PRK11423	261	PRK11423, PRK11423, methylmalonyl-CoA decarboxylas	1e-07
PRK07112	255	PRK07112, PRK07112, polyketide biosynthesis enoyl-	2e-04
PLN03214	278	PLN03214, PLN03214, probable enoyl-CoA hydratase/i	3e-04
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	4e-04
PRK08321	302	PRK08321, PRK08321, naphthoate synthase; Validated	6e-04

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score =  247 bits (632), Expect = 3e-84
 Identities = 107/137 (78%), Positives = 124/137 (90%)

Query: 1   MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60
           M QT SENLILV +   GIA +TINRPK+LN+LTR MM ++A AFK LD+D+SV VIIL+
Sbjct: 2   MTQTVSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILT 61

Query: 61  GSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALAC 120
           GSGRAFCSGVDLT+AE+VFKGDVKDVETD VAQMERCRKPIIGAI+GFA+TAGFEIALAC
Sbjct: 62  GSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAITAGFEIALAC 121

Query: 121 DVLVAAKGAKFIDTHAR 137
           D+LVA++GAKFIDTHA+
Sbjct: 122 DILVASRGAKFIDTHAK 138

Length = 265

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score =  142 bits (361), Expect = 2e-43
 Identities = 50/130 (38%), Positives = 79/130 (60%), Gaps = 1/130 (0%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           IL+      +  +T+NRP++ N+L+ ++   +  A    D D+ V V++L+G+  AFC+G
Sbjct: 5   ILLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAG 64

Query: 70  VDLTSAE-DVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG 128
           +DL     D      +D   +        RKP+IGAI+G AVT G E+ALACD+L+A++ 
Sbjct: 65  LDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASER 124

Query: 129 AKFIDTHARL 138
           A+F DTHAR+
Sbjct: 125 ARFADTHARV 134

Length = 258

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score =  131 bits (333), Expect = 9e-40
 Identities = 47/134 (35%), Positives = 78/134 (58%), Gaps = 6/134 (4%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           +LV RD  G+A +T+NRP+  N+L+  M+ ++A A    + D  V V++L+G+G+AFC+G
Sbjct: 1   VLVERDG-GVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAG 59

Query: 70  VDLTSAEDVFKGDVK-----DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLV 124
            DL     +     +         + +  + R  KP+I A++G A+  G E+ALACD+ +
Sbjct: 60  ADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRI 119

Query: 125 AAKGAKFIDTHARL 138
           AA+ AKF     +L
Sbjct: 120 AAEDAKFGLPEVKL 133

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score =  121 bits (305), Expect = 6e-35
 Identities = 48/133 (36%), Positives = 78/133 (58%), Gaps = 5/133 (3%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           ILV R+  GIA +T+NRP+ LN+L   M+ ++A+A    + D  V V++L+G+G+AF +G
Sbjct: 7   ILVERED-GIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAG 65

Query: 70  VDLT----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVA 125
            DL       +     ++     D +  +    KP+I A++G+A+  G E+ALACD+ +A
Sbjct: 66  ADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIA 125

Query: 126 AKGAKFIDTHARL 138
           A+ AKF      L
Sbjct: 126 AEDAKFGLPEVNL 138

Length = 257

>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional

 Score =  102 bits (256), Expect = 1e-27
 Identities = 49/131 (37%), Positives = 84/131 (64%), Gaps = 13/131 (9%)

Query: 7   ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAF 66
           E +++ TR  +G+  +T+NRPK+LN+L  ++M ++  A  + D DE +  I+++GS +AF
Sbjct: 4   ETILVETRGRVGL--ITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAF 61

Query: 67  CSGVDLT-----SAEDVFKGD-VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALAC 120
            +G D+      S  DV+KGD + + E      + R RKP+I A++G+A+  G E+A+ C
Sbjct: 62  AAGADIKEMADLSFMDVYKGDYITNWEK-----VARIRKPVIAAVAGYALGGGCELAMMC 116

Query: 121 DVLVAAKGAKF 131
           D+++AA  AKF
Sbjct: 117 DIIIAADTAKF 127

Length = 257

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score =  101 bits (255), Expect = 2e-27
 Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 5/125 (4%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           +LV  +  G+  +TINRP   N+LT +M   +A A ++   D +V V++L+G+GRAF +G
Sbjct: 7   LLVELED-GVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAG 65

Query: 70  VDLTSAEDVFKGDVKDVET---DTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAA 126
            D+            D        +  +    KP++ A++G AV  G  +ALACD++ A+
Sbjct: 66  GDI-KDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYAS 124

Query: 127 KGAKF 131
           + AKF
Sbjct: 125 ESAKF 129

Length = 259

>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional

 Score =  102 bits (255), Expect = 3e-27
 Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 20/134 (14%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED 77
           GIA +T+NRP  LN+ T +M  ++ +AF + D D++V  +I++G+GRAFC+G DL++  +
Sbjct: 13  GIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGN 72

Query: 78  VFKGD--------------------VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIA 117
            F  D                    V+D       ++    KP+I A++G AV  G  + 
Sbjct: 73  TFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMT 132

Query: 118 LACDVLVAAKGAKF 131
           LA D+ +A+  A+F
Sbjct: 133 LAMDIRLASTAARF 146

Length = 296

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score =  100 bits (252), Expect = 4e-27
 Identities = 40/121 (33%), Positives = 74/121 (61%), Gaps = 11/121 (9%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLT---- 73
           G+A + ++RP+++N+L+  ++ ++ QA + L++D SV  I+L+G   AF +G D+     
Sbjct: 7   GVAVIKLDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGGPGAFSAGADIKEMAA 66

Query: 74  ---SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAK 130
              + +  F  + +D+ +     +E   KP+I A++G+A+  G E+ALACD  +AA  AK
Sbjct: 67  EPLAQQAQFSLEAQDLWSR----LEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAK 122

Query: 131 F 131
           F
Sbjct: 123 F 123

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score =  100 bits (252), Expect = 5e-27
 Identities = 48/141 (34%), Positives = 67/141 (47%), Gaps = 13/141 (9%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           +L      G+A +T+NRP  LN+ T  M A++  A    + D +V VI+L+G+GR FC+G
Sbjct: 7   VLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAG 66

Query: 70  VDLTSAEDVFKGDVKDVETDTVAQMER-------------CRKPIIGAISGFAVTAGFEI 116
            D+   + +   D +           R              RKP+I AI+G     G   
Sbjct: 67  ADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTH 126

Query: 117 ALACDVLVAAKGAKFIDTHAR 137
           AL CDV  AA GAKF    AR
Sbjct: 127 ALMCDVRFAADGAKFTTAFAR 147

Length = 272

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score = 99.7 bits (249), Expect = 1e-26
 Identities = 35/128 (27%), Positives = 71/128 (55%), Gaps = 1/128 (0%)

Query: 5   KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGR 64
            + +++L+ R   G+A + +NRP++ N+L   +   +A+ F  L +D  +  I+L+G  +
Sbjct: 4   TATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEK 63

Query: 65  AFCSGVDLTSAEDVFKGDVKDVETDTV-AQMERCRKPIIGAISGFAVTAGFEIALACDVL 123
            F +G D+         ++    T+     + +C KP+I A++G+A+  G E+A+  D++
Sbjct: 64  VFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADII 123

Query: 124 VAAKGAKF 131
           VA + A F
Sbjct: 124 VAGESASF 131

Length = 261

>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional

 Score = 99.3 bits (248), Expect = 2e-26
 Identities = 48/138 (34%), Positives = 72/138 (52%), Gaps = 13/138 (9%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           +   R P G+  + +N P +LN+    M  ++A  ++ +D+D  V V+++ G G+AF +G
Sbjct: 13  LRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAG 72

Query: 70  VDLTSAEDVFKGDVKDVET---------DTVAQMERCRKPIIGAISGFAVTAGFEIALAC 120
            DL   E++      D E          D V  +  C KPI+ AI G AV AG   AL  
Sbjct: 73  GDLALVEEM----ADDFEVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLA 128

Query: 121 DVLVAAKGAKFIDTHARL 138
           D+ +AAK A+ ID H RL
Sbjct: 129 DISIAAKDARIIDGHTRL 146

Length = 268

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 96.5 bits (241), Expect = 3e-25
 Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 11/141 (7%)

Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
               IL+  +  G+A +T+NRP  LNS TR M  ++ +A   ++ D+    ++L+G+GR 
Sbjct: 2   MYETILLAIEA-GVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRG 59

Query: 66  FCSGVDLTSAEDVFKGD-VKD----VETD---TVAQMERCRKPIIGAISGFAVTAGFEIA 117
           FC+G DL +  DV  G  + D    +ET     V ++     P+I A++G A  AG  +A
Sbjct: 60  FCAGQDL-ADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLA 118

Query: 118 LACDVLVAAKGAKFIDTHARL 138
           LACD+++AA+ A FI    ++
Sbjct: 119 LACDIVLAARSASFIQAFVKI 139

Length = 262

>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional

 Score = 93.1 bits (232), Expect = 4e-24
 Identities = 45/128 (35%), Positives = 76/128 (59%), Gaps = 7/128 (5%)

Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
           S+ +++  R    +  +TINRP++ N++  ++   +A A   LD D  + V IL+G+G  
Sbjct: 2   SDEVLVERRG--RVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGT 59

Query: 66  FCSGVDLTSAEDVFKGDVKDVETDTVAQMERC--RKPIIGAISGFAVTAGFEIALACDVL 123
           FC+G+DL +     +G+   +       +     RKP+I A+ G+A+  GFE+ALACD++
Sbjct: 60  FCAGMDLKAF---ARGERPSIPGRGFGGLTERPPRKPLIAAVEGYALAGGFELALACDLI 116

Query: 124 VAAKGAKF 131
           VAA+ AKF
Sbjct: 117 VAARDAKF 124

Length = 254

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score = 93.1 bits (232), Expect = 4e-24
 Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 6/136 (4%)

Query: 1   MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60
           M  T S + +L+     GIA +T NRP + N++T +M   +A+  +++  D S+  ++L 
Sbjct: 1   MAMTTSTDELLLEVRG-GIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLR 59

Query: 61  GSG-RAFCSGVDLTSAEDVFKG-DVKDVET--DTV-AQMERCRKPIIGAISGFAVTAGFE 115
           G+G +AF +G D+          D    E   D V   +E+ R P I AI+G  V  G  
Sbjct: 60  GAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAA 119

Query: 116 IALACDVLVAAKGAKF 131
           IA ACD+ +A   A+F
Sbjct: 120 IAAACDLRIATPSARF 135

Length = 262

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score = 92.4 bits (230), Expect = 8e-24
 Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 6/132 (4%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCS 68
             V R    +  VT+NRP+ +N+L      ++ + F     D    V I++G+G +AF +
Sbjct: 6   STVERKG-HVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSA 64

Query: 69  GVDLTSAEDVFKGDVKDVETDTVAQMER--CRKPIIGAISGFAVTAGFEIALACDVLVAA 126
           G DL   E    G     E+       R    KPII A++G A+  GFE+ALACD++VAA
Sbjct: 65  GNDL--KEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAA 122

Query: 127 KGAKFIDTHARL 138
           + A F     R+
Sbjct: 123 ENATFALPEPRV 134

Length = 259

>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional

 Score = 90.9 bits (226), Expect = 3e-23
 Identities = 44/116 (37%), Positives = 65/116 (56%), Gaps = 6/116 (5%)

Query: 22  VTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAE----- 76
           VT+NRP++ N+L+  M+  M  A+  +D D  +   IL+G+G AFC+G+DL +A      
Sbjct: 18  VTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPG 77

Query: 77  DVFKGDVKDV-ETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
           D FK    D    D + +  R  KP+I A+ G A+  G EI    D+ VA + AKF
Sbjct: 78  DSFKDGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKF 133

Length = 263

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score = 90.2 bits (224), Expect = 6e-23
 Identities = 43/118 (36%), Positives = 75/118 (63%), Gaps = 4/118 (3%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAE 76
            IA VTINRPK+LN+L    + ++      ++ D++V  +IL+G+G +AF +G D++  +
Sbjct: 13  HIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMK 72

Query: 77  D--VFKGDVKDVETDTV-AQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
           D    +G    +  + V  ++E   KP+I AI+GFA+  G E+++ACD+ +A++ AKF
Sbjct: 73  DLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKF 130

Length = 260

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 89.0 bits (221), Expect = 2e-22
 Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 6/135 (4%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           I +  D  G+A +T+NRP+  N+L+  M+A++  A + L  D +V V++L+G+G++FC+G
Sbjct: 6   IRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAG 65

Query: 70  VDLTSAEDVFKGDVKD--VETDTVAQMER----CRKPIIGAISGFAVTAGFEIALACDVL 123
            DL         D      E   +A M +      KP+IG I G A   G  +   CDV 
Sbjct: 66  GDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVA 125

Query: 124 VAAKGAKFIDTHARL 138
           +A  GA+F  T  RL
Sbjct: 126 IAVSGARFGLTETRL 140

Length = 262

>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional

 Score = 88.9 bits (221), Expect = 3e-22
 Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 28/141 (19%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLT-SAE 76
            IA +T+NRP+  N++T     ++  A +  D D  V VI++SG+G+ FC+G DL+  AE
Sbjct: 19  RIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAE 78

Query: 77  DVFKGDVKDVETDTV-----------------AQMER----------CRKPIIGAISGFA 109
               G                             M R            KP +  + G+ 
Sbjct: 79  GSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYC 138

Query: 110 VTAGFEIALACDVLVAAKGAK 130
           V  G +IAL CD ++AA  AK
Sbjct: 139 VAGGTDIALHCDQVIAADDAK 159

Length = 302

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 88.4 bits (219), Expect = 3e-22
 Identities = 46/128 (35%), Positives = 77/128 (60%), Gaps = 9/128 (7%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED 77
           G+A +T+NRP  LNS T  M  ++ +A + +++D+    ++L+G+GR FC+G DL S  +
Sbjct: 8   GVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDL-SERN 65

Query: 78  VFKGDVKD----VETDTVAQMERCR---KPIIGAISGFAVTAGFEIALACDVLVAAKGAK 130
              G   D    +ET     + R R    P++ A++G A  AG  +ALACD+++AA+ A+
Sbjct: 66  PTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESAR 125

Query: 131 FIDTHARL 138
           FI   A++
Sbjct: 126 FIQAFAKI 133

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score = 88.5 bits (220), Expect = 3e-22
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 14/128 (10%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED 77
            +A VT+NRP   N++  +  +++ + F+ LD D  V  ++LSGSG+ F  G+DL +   
Sbjct: 15  HVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAG 74

Query: 78  VFKGDVKDVET--------------DTVAQMERCRKPIIGAISGFAVTAGFEIALACDVL 123
           VF    KD                   +  +  CRKP+I A+ G+ +  G ++  ACD+ 
Sbjct: 75  VFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMR 134

Query: 124 VAAKGAKF 131
            A+  AKF
Sbjct: 135 YASADAKF 142

Length = 272

>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional

 Score = 88.0 bits (218), Expect = 5e-22
 Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 20/146 (13%)

Query: 1   MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60
            G   + +L+LV      IA +T+NRP+ +NS+   +M  + +A   +  D SV V++L+
Sbjct: 2   AGYRSTMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLT 61

Query: 61  GSGRAFCSGVDLTSAEDVFKGDVKDVE---------------TDTVAQMERCRKPIIGAI 105
           G+GR F SG D  SA     G V  VE                D +  + R  +P+I A+
Sbjct: 62  GAGRGFSSGADHKSA-----GVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAV 116

Query: 106 SGFAVTAGFEIALACDVLVAAKGAKF 131
           +G A+  G  +ALA D+ VA+  A F
Sbjct: 117 NGPAIGGGLCLALAADIRVASSSAYF 142

Length = 276

>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional

 Score = 86.5 bits (215), Expect = 1e-21
 Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 8/126 (6%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           + V R+   +  V +NRP+  N++     A +A AF++ D D++  V +L G+G  FC+G
Sbjct: 5   VRVERNG-PVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAG 63

Query: 70  VDLTSAEDVFKGDVKDVETDTVAQMERCR----KPIIGAISGFAVTAGFEIALACDVLVA 125
            DL +      G    +       M   R    KP+I A+SG+AV  G E+AL CD+ VA
Sbjct: 64  ADLKAVGT---GRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVA 120

Query: 126 AKGAKF 131
            + A F
Sbjct: 121 EEDAVF 126

Length = 254

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 86.3 bits (214), Expect = 2e-21
 Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 3/124 (2%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED 77
           G+A +T+N P   N++T  M A +  A  + + D  V  ++++G+G+AFC+G DLT+   
Sbjct: 12  GVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGA 71

Query: 78  VFKGDVKDVET---DTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDT 134
                 +D      D    +  C  P I A++G AV AG  +ALA DV +A   A F   
Sbjct: 72  APGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDAR 131

Query: 135 HARL 138
             +L
Sbjct: 132 FQKL 135

Length = 249

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score = 86.1 bits (214), Expect = 2e-21
 Identities = 47/138 (34%), Positives = 75/138 (54%), Gaps = 8/138 (5%)

Query: 7   ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAF 66
           E L +  R    +A VT+NRP   N+   +++A++  AF++LD D+SV  ++L+G+G+AF
Sbjct: 4   ETLEIEQRGQ--VATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAF 61

Query: 67  CSGVDLTSAEDVFKGDVKD--VETDTVAQM----ERCRKPIIGAISGFAVTAGFEIALAC 120
           C+G DL   + +      +   +   +A M     RC KP+I  + G A   G  +  AC
Sbjct: 62  CAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAAC 121

Query: 121 DVLVAAKGAKFIDTHARL 138
           D+ VAA  A F  +  RL
Sbjct: 122 DIAVAADHAVFCLSEVRL 139

Length = 262

>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional

 Score = 85.2 bits (211), Expect = 4e-21
 Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 1/130 (0%)

Query: 9   LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCS 68
           +I V     G A VT++RP  LN+L   M  +     K ++ D  + V+I++G GRAFC 
Sbjct: 1   MIKV-ESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCV 59

Query: 69  GVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG 128
           G DL+     F  D+++     + ++    K  I AI+G    A   IAL+ D   A++ 
Sbjct: 60  GADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRD 119

Query: 129 AKFIDTHARL 138
            KF+    RL
Sbjct: 120 VKFVTAFQRL 129

Length = 248

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score = 84.8 bits (210), Expect = 7e-21
 Identities = 37/125 (29%), Positives = 73/125 (58%), Gaps = 2/125 (1%)

Query: 8   NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFC 67
           + +LV+R    +  +T+NRP++ N+L  +++  +    ++   D S+ V +++G+ R F 
Sbjct: 2   SELLVSRQQ-RVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFA 60

Query: 68  SGVDLTS-AEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAA 126
           +G DL   AE      + D       +++   KP+I A++G+A+ AG E+AL CD+++A 
Sbjct: 61  AGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAG 120

Query: 127 KGAKF 131
           + A+F
Sbjct: 121 ENARF 125

Length = 255

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 84.2 bits (208), Expect = 1e-20
 Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 16/129 (12%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTS--- 74
            + ++ +NRP   N+L+     +  +A  SLD++ +V VIILSG+G  FCSG+DL +   
Sbjct: 17  SVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNS 76

Query: 75  -AEDVFKGD-----------VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDV 122
            +E    GD           +K ++ D +  +E+CRKP+I AI G  +  G +I  ACD+
Sbjct: 77  ISEQSSSGDRGRSGERLRRKIKFLQ-DAITAIEQCRKPVIAAIHGACIGGGVDIVTACDI 135

Query: 123 LVAAKGAKF 131
              ++ A F
Sbjct: 136 RYCSEDAFF 144

Length = 275

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score = 84.0 bits (208), Expect = 2e-20
 Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 16/124 (12%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED 77
            +A VT++ P  +N+L+R +  ++   F  + +   V V++L+G+G+ FC+G DL     
Sbjct: 13  HVAVVTLDNP-PVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKG--- 68

Query: 78  VFKGDVKDVETDTVAQMER----------CRKPIIGAISGFAVTAGFEIALACDVLVAAK 127
             + DV     D  A   R          C KP+I A++G A+ AG  +  +CD++VA++
Sbjct: 69  --RPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASE 126

Query: 128 GAKF 131
            A F
Sbjct: 127 NAVF 130

Length = 257

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score = 83.5 bits (207), Expect = 2e-20
 Identities = 40/130 (30%), Positives = 76/130 (58%), Gaps = 4/130 (3%)

Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
           +E  +L+  D  G+A +T+NRP++ N+L+ +M+A +  A  ++  D SV V++L+ +G+A
Sbjct: 8   TEAPLLLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKA 67

Query: 66  FCSGVDL---TSAEDV-FKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACD 121
           FC+G DL    +A  + +   +    +  +  +    +P+I  + G A  AG ++  +CD
Sbjct: 68  FCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCD 127

Query: 122 VLVAAKGAKF 131
           + VAA  A+F
Sbjct: 128 LAVAADTARF 137

Length = 266

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score = 81.9 bits (203), Expect = 1e-19
 Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 29/132 (21%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED 77
           G+A +T+NRP+  N LT    A++   F+ L   + V  ++L+G+G  FCSG        
Sbjct: 26  GVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSG-------- 77

Query: 78  VFKGDVKDV------------------ETDTVAQMERCRKPIIGAISGFAVTAGFEIALA 119
              GDV ++                    D V  M  C +PII A+ G    AG  +A+A
Sbjct: 78  ---GDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMA 134

Query: 120 CDVLVAAKGAKF 131
            D+ +    AK 
Sbjct: 135 SDLRLGTPSAKT 146

Length = 277

>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional

 Score = 80.5 bits (199), Expect = 3e-19
 Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 16/144 (11%)

Query: 9   LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCS 68
           +I VTRD   +  + + RP+  N+L   +  ++ +A +    DES   I+L+G G  FC+
Sbjct: 1   MIGVTRDG-QVLTIELQRPERRNALNAELCEELREAVRKAV-DESARAIVLTGQGTVFCA 58

Query: 69  GVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG 128
           G DL  + DV+  D  D   + +  ++    P+I AI+G A+ AG ++A+ACD+ V A  
Sbjct: 59  GADL--SGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPE 116

Query: 129 AKF----------ID--THARLVC 140
           A F          +D  T  RL  
Sbjct: 117 AYFQFPVAKYGIALDNWTIRRLSS 140

Length = 243

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score = 80.5 bits (199), Expect = 3e-19
 Identities = 39/125 (31%), Positives = 75/125 (60%), Gaps = 4/125 (3%)

Query: 9   LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFC 67
            I V      +  +T+NRP++ N+L+ +++ ++      ++++ +V V+IL+G+G +AFC
Sbjct: 4   NISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFC 63

Query: 68  SGVDLTSAEDVFKGDVKDVET---DTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLV 124
           +G DL     + +  V+   +    T+  +E+  +P+I AI+G A+  G E+ALACD  +
Sbjct: 64  AGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRI 123

Query: 125 AAKGA 129
           AA+ A
Sbjct: 124 AAESA 128

Length = 260

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score = 80.1 bits (198), Expect = 4e-19
 Identities = 35/119 (29%), Positives = 69/119 (57%), Gaps = 9/119 (7%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVD------ 71
            +A +T+N P + N+L+  ++ ++++    ++KD++V V+++ G GR F +G D      
Sbjct: 11  HVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTS 69

Query: 72  LTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAK 130
           +T AE   +  +  +   T  ++E+  KP+I AI G A+  G E+A++C +  A + AK
Sbjct: 70  VTEAEQATE--LAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAK 126

Length = 257

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score = 79.3 bits (196), Expect = 7e-19
 Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 6/122 (4%)

Query: 22  VTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLT------SA 75
           +T++ P + N+L   M A   +A  + ++D S+  ++L+G+G  FC+G +L       + 
Sbjct: 16  LTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAK 75

Query: 76  EDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTH 135
               +    D   D +  +    KP+I A+ G A  AGF +ALACD+LVAA+ AKF+  +
Sbjct: 76  PPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAY 135

Query: 136 AR 137
            +
Sbjct: 136 VK 137

Length = 260

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 79.5 bits (197), Expect = 7e-19
 Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 11/136 (8%)

Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
             + + VT +  GIA V +NRP  +N+L  +M  ++    K L KD  +  +ILSG G A
Sbjct: 1   MMDRVSVTIED-GIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGA 59

Query: 66  FCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRK----------PIIGAISGFAVTAGFE 115
           FC+G+D+ S        VK +           ++          P+I A+ G     G +
Sbjct: 60  FCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQ 119

Query: 116 IALACDVLVAAKGAKF 131
           IAL  D+ +AA   K 
Sbjct: 120 IALGADIRIAAPDTKL 135

Length = 262

>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase

 Score = 79.4 bits (196), Expect = 2e-18
 Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 13/123 (10%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLT--- 73
           GIA +TINRP+  N+     + ++ +AF     D SV VIIL+G G +AFCSG D     
Sbjct: 76  GIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRG 135

Query: 74  -----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG 128
                  +D  + +V D++     Q+ R  KP+I  ++G+AV  G  + + CD+ +AA  
Sbjct: 136 KDGYVGPDDAGRLNVLDLQI----QIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADN 191

Query: 129 AKF 131
           A F
Sbjct: 192 AVF 194

Length = 327

>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated

 Score = 77.2 bits (191), Expect = 5e-18
 Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 15/124 (12%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAE 76
           GIA +TINRP+  N+     + +M  AF     D+++ VIIL+G+G +AFCSG D     
Sbjct: 22  GIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQK--- 78

Query: 77  DVFKGDVKDVETDTVA---------QMERCRKPIIGAISGFAVTAGFEIALACDVLVAAK 127
              +G    V+ D V           +  C KP+I  ++G+A+  G  + L CD+ +AA 
Sbjct: 79  --VRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAAD 136

Query: 128 GAKF 131
            A F
Sbjct: 137 NAIF 140

Length = 273

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score = 75.5 bits (186), Expect = 2e-17
 Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 11/135 (8%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCS 68
           +  TR+   I  +T++RPK+ N++       M + F +   D  + V I++G+G + F +
Sbjct: 5   LHTTRNG-SILEITLDRPKA-NAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSA 62

Query: 69  GVDLTSAEDVFKGDVKDVE--TDTVAQMERCR---KPIIGAISGFAVTAGFEIALACDVL 123
           G DL +A +   G+  D +      A +       KP+I A++G+A   GFE+ALA D +
Sbjct: 63  GWDLKAAAE---GEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFI 119

Query: 124 VAAKGAKFIDTHARL 138
           V A  A F    A+L
Sbjct: 120 VCADNASFALPEAKL 134

Length = 261

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score = 75.5 bits (186), Expect = 2e-17
 Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 6/134 (4%)

Query: 11  LVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSG 69
           L+     G+  +T N P   N+++  M   + QA  + + D+++ V++L+G+G +AF SG
Sbjct: 13  LLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSG 72

Query: 70  VDLTSAEDVFKGD--VKDVETDTVAQME---RCRKPIIGAISGFAVTAGFEIALACDVLV 124
            D++  E+       V   E    A         KP I  I G+ +  G  IALACD+ +
Sbjct: 73  ADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRI 132

Query: 125 AAKGAKFIDTHARL 138
           AA+ ++F    ARL
Sbjct: 133 AAEDSRFGIPAARL 146

Length = 269

>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional

 Score = 74.6 bits (184), Expect = 4e-17
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 22  VTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG 81
           + ++RP   N+   +M+ D+A A    + D+ + V +L   G  F +G+DL         
Sbjct: 12  IGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAA 71

Query: 82  DVKDVETDTV----AQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
                    +        R  KP++ A+ G+ +T G E+ LA D++VAA   +F
Sbjct: 72  GGFPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRF 125

Length = 255

>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

 Score = 74.0 bits (182), Expect = 1e-16
 Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 10/137 (7%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG---RAF 66
           I   +   GIA +TINRP+  N+     + +M  AF     D +V VI+L+G+G   +AF
Sbjct: 20  ITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAF 79

Query: 67  CSGVDLTSAEDVFKGDVKDVETDT--VAQMER----CRKPIIGAISGFAVTAGFEIALAC 120
           CSG D         G V D       V  ++R      KP+I  ++G+A+  G  + + C
Sbjct: 80  CSGGD-QKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVC 138

Query: 121 DVLVAAKGAKFIDTHAR 137
           D+ +AA  A F  T  +
Sbjct: 139 DLTIAADNAIFGQTGPK 155

Length = 282

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 73.6 bits (181), Expect = 1e-16
 Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 10/131 (7%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSL-DKDESVLVIILSGSGRAFCSGVDL---- 72
           G+A +T++ P+ +N+++  M+  +A+A  ++ D    V  ++L+G+GR FC+G +L    
Sbjct: 13  GVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRG 72

Query: 73  --TSAEDVFKGDVKDVETDTVAQMERCRK---PIIGAISGFAVTAGFEIALACDVLVAAK 127
                 D        +ET     + R R    PI+ A++G A   G   AL  D+++ A+
Sbjct: 73  SGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCAR 132

Query: 128 GAKFIDTHARL 138
            A F+    R+
Sbjct: 133 SAYFLQAFRRI 143

Length = 266

>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional

 Score = 73.1 bits (180), Expect = 2e-16
 Identities = 46/129 (35%), Positives = 67/129 (51%), Gaps = 14/129 (10%)

Query: 12  VTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGV 70
           VTRD  G+A +TI    SLN L   ++  + QA + L  D  V V++L G+G +AF  G 
Sbjct: 10  VTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGA 69

Query: 71  DL--------TSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDV 122
           D+         SAE  F   ++D+  D V        P+I  I G+ +  G E+A ACD+
Sbjct: 70  DIKEMATLDQASAE-AFISRLRDL-CDAVRH---FPVPVIARIPGWCLGGGLELAAACDL 124

Query: 123 LVAAKGAKF 131
            +AA  A+F
Sbjct: 125 RIAAHDAQF 133

Length = 256

>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional

 Score = 71.5 bits (176), Expect = 9e-16
 Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 25/146 (17%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED 77
            IA +T+NRP++ N+  R M+ ++  AF+  + D++V VI+L+G+G+ F +G DL S   
Sbjct: 13  RIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTP 72

Query: 78  V------------FKGDVKD---VETDTVAQMER----------CRKPIIGAISGFAVTA 112
                           D      VE     + E             KP I  + G  +  
Sbjct: 73  GRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAG 132

Query: 113 GFEIALACDVLVAAKGAKFIDTHARL 138
           G  +A  CD++VA+  A F D   R+
Sbjct: 133 GLMLAWVCDLIVASDDAFFSDPVVRM 158

Length = 288

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 70.9 bits (174), Expect = 1e-15
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 8/128 (6%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED 77
           G+A +T++ P + N+L+  ++A +    ++   D +V  ++L+ +G  FC+G DL+ A  
Sbjct: 15  GVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGG 74

Query: 78  VFKGDVKDVETDTVAQMER-------CRKPIIGAISGFAVTAGFEIALACDVLVAAKGAK 130
              GD  D       +M           KP+I AI G     GF +  ACD++VA   + 
Sbjct: 75  G-GGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPEST 133

Query: 131 FIDTHARL 138
           F  T AR+
Sbjct: 134 FALTEARI 141

Length = 260

>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 70.4 bits (173), Expect = 1e-15
 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 1/124 (0%)

Query: 4   TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG 63
              + + L   +  GIA VT+    + N+ +  +   + +AF ++ +D    V+IL+G  
Sbjct: 1   MMMKVVELREVEE-GIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYP 59

Query: 64  RAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVL 123
             F +G        +  G     E +  +    C  P+I A+ G A+  G  + L  D++
Sbjct: 60  NYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIV 119

Query: 124 VAAK 127
           V ++
Sbjct: 120 VLSR 123

Length = 249

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score = 70.4 bits (173), Expect = 2e-15
 Identities = 42/142 (29%), Positives = 77/142 (54%), Gaps = 12/142 (8%)

Query: 8   NLILVTRDPMGIAYVTINRPKSLNSLT-RSMMADMAQAFKSLDKDESVLVIILSGSGRAF 66
           + +LV RD   I  +T+NRP++ N+L+    +  +  A  +++ D SV  +IL+G+G AF
Sbjct: 3   DFLLVERDG-HIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAF 61

Query: 67  CSG---VDLTSAEDVFKGDVKDVETDTVAQMER-------CRKPIIGAISGFAVTAGFEI 116
            SG    D+ +    F G   D+       ++R          P+I A++G A+ AG ++
Sbjct: 62  SSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDL 121

Query: 117 ALACDVLVAAKGAKFIDTHARL 138
           A  CD+ +A++ A+F ++  +L
Sbjct: 122 ACMCDIRIASETARFAESFVKL 143

Length = 266

>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase)

 Score = 70.3 bits (172), Expect = 2e-15
 Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCS 68
           I   +   GIA +TINRP+  N+     + ++ QA     +D  + V+IL+G+G +AFCS
Sbjct: 4   IRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCS 63

Query: 69  GVDLTSAEDVFKGDVKDVETDTVAQMER----CRKPIIGAISGFAVTAGFEIALACDVLV 124
           G D     D    D   V    V  ++R    C KP+I  ++G+A+  G  + + CD+ +
Sbjct: 64  GGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHMMCDLTI 123

Query: 125 AAKGAKFIDTHARL 138
           AA+ A+F  T  ++
Sbjct: 124 AAENARFGQTGPKV 137

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259

>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional

 Score = 69.0 bits (169), Expect = 6e-15
 Identities = 46/142 (32%), Positives = 79/142 (55%), Gaps = 12/142 (8%)

Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-R 64
           ++ +++  RD  GIA +T+NRP+ LN+L  +++  +     +++ DESV  +IL+G+G R
Sbjct: 2   TDTVLIEIRD--GIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDR 59

Query: 65  AFCSGVDLTS-AEDVFKGD-------VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEI 116
           AF +G D+   +  V  G        V+  +  T A++E   KP+I A++G A   G EI
Sbjct: 60  AFSAGADIHEFSASVAAGADVALRDFVRRGQAMT-ARLEAFPKPVIAAVNGLAFGGGCEI 118

Query: 117 ALACDVLVAAKGAKFIDTHARL 138
             A  + +A++ A F     RL
Sbjct: 119 TEAVHLAIASERALFAKPEIRL 140

Length = 260

>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated

 Score = 68.9 bits (169), Expect = 8e-15
 Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 21/128 (16%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED 77
           GIA+VT+NRP+  N+++ ++  +M     +L+ D+   V++L+G+G A+ +G+DL   ++
Sbjct: 17  GIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDL---KE 73

Query: 78  VFKGDVKDVETDTVAQMERCR--------------KPIIGAISGFAVTAGFEIALACDVL 123
            F    ++ +       ER R              KP I  ++G+    GF   +ACD+ 
Sbjct: 74  YF----RETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLA 129

Query: 124 VAAKGAKF 131
           +AA  A+F
Sbjct: 130 IAADEAQF 137

Length = 275

>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 17/146 (11%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           I  T    GIA VT++ P  +N+L  +    +A A  +   D    V++L   GR F +G
Sbjct: 3   ITSTTPEPGIAEVTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAG 61

Query: 70  VDLT--SAEDVFKG--DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVA 125
           VD+    A   F    D           +  C  P+I A+ GF +  G  +    DV+VA
Sbjct: 62  VDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVA 121

Query: 126 AKGAKF----ID-------TH-ARLV 139
           +  A F    +D       TH  RLV
Sbjct: 122 SDDATFGLPEVDRGALGAATHLQRLV 147

Length = 249

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 67.0 bits (164), Expect = 3e-14
 Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 11/120 (9%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDL----- 72
            +A + +NRP++LN+L   M+ ++ QA K +  + S  +++L G+GR F +G D+     
Sbjct: 15  RVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLS 73

Query: 73  TSAEDVFKGDVKDVE--TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAK 130
           ++ E  F G +  +     T+  M    K  I AI G A   G  IAL  D ++A   AK
Sbjct: 74  SNDESKFDGVMNTISEIVVTLYTM---PKLTISAIHGPAAGLGLSIALTADYVIADISAK 130

Length = 260

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score = 64.1 bits (156), Expect = 3e-13
 Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 4/118 (3%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS-GRAFCSGVDLTSAE 76
           GI  + ++RP++ N++ + M+  +  AF+ +  D S  V++L  S    FC+G DL    
Sbjct: 4   GIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERR 63

Query: 77  DVFKGDVKDVETD---TVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
            +   +V+        T + +E    P I  + G A+  G E+AL+CD+ +  + A F
Sbjct: 64  KMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVF 121

Length = 251

>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase

 Score = 63.8 bits (155), Expect = 4e-13
 Identities = 35/128 (27%), Positives = 70/128 (54%), Gaps = 5/128 (3%)

Query: 7   ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RA 65
           E+++   R+  GIA++ INRP  +N+       ++  A K    D  + VI+L+G+G +A
Sbjct: 2   EDILYEKRN--GIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKA 59

Query: 66  FCSGVDLTSAEDVF--KGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVL 123
           FC+G D ++ +  +  +G +     +  + +    KP+I  + G+A+  G  +   CD+ 
Sbjct: 60  FCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLT 119

Query: 124 VAAKGAKF 131
           +A++ A+F
Sbjct: 120 IASEKAQF 127

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256

>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional

 Score = 63.1 bits (154), Expect = 9e-13
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 5/117 (4%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED 77
           G+A + +NRP   N+L   ++A +  AF  L   E V  ++L G G  FC+G+DL+   +
Sbjct: 11  GVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRE 68

Query: 78  VFKGDVKDVET---DTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
              G+             +++  R P+I A+ G  V  G E+A A  + VA +   F
Sbjct: 69  RDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYF 125

Length = 255

>gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

 Score = 62.2 bits (151), Expect = 3e-12
 Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 7/119 (5%)

Query: 20  AYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDV 78
           A++ ++ PK  NS T  M+  +  AF+    D  V+ ++ +  G +AFC+G +     + 
Sbjct: 39  AWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEY 98

Query: 79  FKGDVK------DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
           + G+ +       +  D V+ +  C KP+I  ++G  +  G EI +A D  +A   A F
Sbjct: 99  YAGNPQEYRQYMRLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANF 157

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 360

>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional

 Score = 61.5 bits (149), Expect = 4e-12
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 20/150 (13%)

Query: 7   ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAF 66
           + L+  T  P  +A +T+NRP+ LN++   M  ++  A    ++D+ + VI+L G+GRAF
Sbjct: 5   QTLLYTTAGP--VATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAF 62

Query: 67  CSGVDLTSA----EDVFKGD-----VKDVE---------TDTVAQMERCRKPIIGAISGF 108
             G D         +    D      KD           T     + R  KP+I  + G+
Sbjct: 63  SGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGW 122

Query: 109 AVTAGFEIALACDVLVAAKGAKFIDTHARL 138
            V    + AL  D+++A+  A     ++R+
Sbjct: 123 CVGGASDYALCADIVIASDDAVIGTPYSRM 152

Length = 298

>gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional

 Score = 61.4 bits (150), Expect = 5e-12
 Identities = 20/55 (36%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 18 GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVD 71
          G+  +T+NRPK+LN+L+  M+  +  A  + + D++V  +++ G+G R FC+G D
Sbjct: 12 GVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGD 66

Length = 342

>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 60.6 bits (147), Expect = 1e-11
 Identities = 25/72 (34%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 1  MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60
            Q  +E ++L   +   +  +T+NRP+ LN ++ S+++ +A+  +  +KD+SV +II+ 
Sbjct: 4  QVQNPAEEVVLG-EEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIK 62

Query: 61 GSGRAFCSGVDL 72
          G+GRAF +G DL
Sbjct: 63 GAGRAFSAGGDL 74

Length = 379

>gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase

 Score = 59.3 bits (143), Expect = 3e-11
 Identities = 30/85 (35%), Positives = 53/85 (62%), Gaps = 8/85 (9%)

Query: 3  QTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62
          +  S++ +LV  +   +  +T+NRPK LN+L+  M++ + Q F + ++D SV ++IL G 
Sbjct: 4  EMASQSQVLV-EEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGH 62

Query: 63 GRAFCSGVDLTSAEDVFKGDVKDVE 87
          GRAFC+G D+ +        V+D+E
Sbjct: 63 GRAFCAGGDVAAV-------VRDIE 80

Length = 381

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 59.1 bits (144), Expect = 4e-11
 Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 6/127 (4%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           + V     GIA +  + P S+N L R+ +A + +A  +L+    +  ++L+ +  AF  G
Sbjct: 8   LQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVG 67

Query: 70  VDLTSAEDVFKGDVKDVET------DTVAQMERCRKPIIGAISGFAVTAGFEIALACDVL 123
            D+T    +F    +++            ++E    P + AI+G+A+  G E  LA D  
Sbjct: 68  ADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYR 127

Query: 124 VAAKGAK 130
           VA+  A+
Sbjct: 128 VASPDAR 134

Length = 715

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score = 58.3 bits (141), Expect = 7e-11
 Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 14/123 (11%)

Query: 18  GIAYVTINRPKS-LNSLTRSMMADMAQAFKSLDKDESVLVIIL-SGSGRAFCSGVDLTSA 75
            +A V I+ P S +N+L++ + A+  +    L  +E++   +L SG   +F +G D+   
Sbjct: 22  DVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADI--- 78

Query: 76  EDVFKGDVKDVETDTVAQ--------MERCRKPIIGAISGFAVTAGFEIALACDVLVAAK 127
             +        E   ++Q        +E+ +KPI+ AISG  +  G E+ALAC   +A K
Sbjct: 79  -QMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATK 137

Query: 128 GAK 130
             K
Sbjct: 138 DRK 140

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional

 Score = 57.1 bits (138), Expect = 1e-10
 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 4/126 (3%)

Query: 10  ILVTRD--PMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFC 67
           ILV R     G+  +  NRP+  N++TR+M A MA+A K+ D D+++   +  G+   F 
Sbjct: 5   ILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFS 64

Query: 68  SGVDLTS--AEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVA 125
           +G D+    A  +          D +  +    KPI+  + G A+  G  I L CD+  A
Sbjct: 65  AGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFA 124

Query: 126 AKGAKF 131
           +  + F
Sbjct: 125 SPRSLF 130

Length = 251

>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional

 Score = 55.5 bits (134), Expect = 4e-10
 Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 7/122 (5%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED 77
            +A +T+NRP+  N     M  ++ +A +  ++D SV  ++++ +G+ F  G DL   + 
Sbjct: 11  DLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKR 70

Query: 78  -VFKGDVKD-VETDTVAQ-----MERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAK 130
            V + DV+  V+   +       +++  KP+I  + G    A   +A+A D  +A+   K
Sbjct: 71  AVDEDDVQSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTK 130

Query: 131 FI 132
           FI
Sbjct: 131 FI 132

Length = 255

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 34/142 (23%), Positives = 57/142 (40%), Gaps = 21/142 (14%)

Query: 1   MGQTKSENLILVTRDPMGIAYVTINRP-KSLNSLTRSMMADMAQAFKSLDKDESVL-VII 58
           M    +  L         IA +TI+ P + +N+L       +    K L +D+ +  V+ 
Sbjct: 1   MEMASAFTL---NVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVF 57

Query: 59  LSGSGRAFCSGVD------LTSAEDVF----KGDVKDVETDTVAQMERCRKPIIGAISGF 108
           +SG    F +G D        +A++      +G          A++E    P++ AI G 
Sbjct: 58  ISGKPDNFIAGADINMLAACKTAQEAEALARQGQQ------LFAEIEALPIPVVAAIHGA 111

Query: 109 AVTAGFEIALACDVLVAAKGAK 130
            +  G E+ALAC   V     K
Sbjct: 112 CLGGGLELALACHYRVCTDDPK 133

Length = 708

>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional

 Score = 55.3 bits (134), Expect = 6e-10
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 21/124 (16%)

Query: 19  IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAF-CSGVDLTSAED 77
           +A +T+N P + N+ T   +  + Q    L+ D+ V  ++++G G  F  +G DL    D
Sbjct: 13  VAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFAD 71

Query: 78  VFKGDVKDVETDTVAQMERC-----------RKPIIGAISGFAVTAGFEIALACDVLVAA 126
              GD K V      +M R            R   I AI+G+A+  G E ALACD+ +A 
Sbjct: 72  ---GD-KAV----AREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAE 123

Query: 127 KGAK 130
           + A+
Sbjct: 124 EQAQ 127

Length = 258

>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated

 Score = 54.8 bits (132), Expect = 6e-10
 Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 10/120 (8%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVD------ 71
           G+A + ++RP + N+LTR +  ++  A   L + + V  +IL G    F +G D      
Sbjct: 17  GLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRT 75

Query: 72  LTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
           L++ E      V+    D VA +    KP + AI+G+A+ AG  +ALA D  V+    KF
Sbjct: 76  LSAQEADTAARVRQQAVDAVAAIP---KPTVAAITGYALGAGLTLALAADWRVSGDNVKF 132

Length = 222

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 54.8 bits (132), Expect = 1e-09
 Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 6/137 (4%)

Query: 8   NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFC 67
             I + RDP G A + ++R    N+    M+ ++  A   +  D S+  ++L G GR F 
Sbjct: 5   QTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFS 64

Query: 68  SGVDLT----SAEDVFKGDVKDVET--DTVAQMERCRKPIIGAISGFAVTAGFEIALACD 121
           +G DL     SA+  +  ++ D     + +  + R + P +  + G A      +   CD
Sbjct: 65  AGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCD 124

Query: 122 VLVAAKGAKFIDTHARL 138
           + + A  A+F  +  R+
Sbjct: 125 MAIGADDAQFCLSEVRI 141

Length = 265

>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 54.2 bits (130), Expect = 2e-09
 Identities = 22/51 (43%), Positives = 37/51 (72%)

Query: 24  INRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTS 74
           +NRP SLN+LT  M+A + + ++S +++  +  +++ GSGRAFCSG D+ S
Sbjct: 57  LNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVS 107

Length = 407

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score = 52.5 bits (126), Expect = 9e-09
 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 10/121 (8%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED 77
           GIA +  + P S+N   R+ +A + QA  ++    S+  +IL+    AF  G D+T    
Sbjct: 16  GIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLG 75

Query: 78  VFKGDVKDVETDTVAQ--------MERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGA 129
           +F   + D E              +E    P + AI+G A+  G E  LA D  +A   A
Sbjct: 76  LFA--LPDAELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTA 133

Query: 130 K 130
           K
Sbjct: 134 K 134

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein

 Score = 49.7 bits (118), Expect = 8e-08
 Identities = 20/51 (39%), Positives = 36/51 (70%)

Query: 24  INRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTS 74
           +NRP +LN+LT  M   + + +K+ ++D ++  +++ GSGRAFC+G D+ S
Sbjct: 52  LNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVS 102

Length = 401

>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 23/133 (17%)

Query: 19  IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDV 78
           IA +T N P   N+L++ ++ D+ QA   L++ E + V+IL    RA  SG  + SA   
Sbjct: 14  IATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVIL----RAP-SGSKVWSAGH- 66

Query: 79  FKGDVKDVETD-------------TVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVA 125
              D+ ++ +               +  +++  KP+I  + G      FE+ ++CD+++A
Sbjct: 67  ---DIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIA 123

Query: 126 AKGAKFIDTHARL 138
           A  + F  T A L
Sbjct: 124 ASTSTFAMTPANL 136

Length = 261

>gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 23/127 (18%), Positives = 51/127 (40%), Gaps = 8/127 (6%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           I V +    + ++ ++RP++ N++   ++A+        +   +++V  L G    FC G
Sbjct: 6   IRVRQQG-DVCFLQLHRPEAQNTINDRLIAECMDVLDRCEHAATIVV--LEGLPEVFCFG 62

Query: 70  VDLTSAEDVFKGDVKDVET-----DTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLV 124
            D ++  +       D+       D   ++       I  + G     G     A D+++
Sbjct: 63  ADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVI 122

Query: 125 AAKGAKF 131
           A + A F
Sbjct: 123 ADETAPF 129

Length = 255

>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 12/128 (9%)

Query: 4   TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVL-VIILSGS 62
             +   + V R P GIA V + + + +NS+T +M   +  A  +L+ D +V  V+  SG 
Sbjct: 7   PGATPGVRVDRRPGGIAVVWLAK-EPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGL 65

Query: 63  GR-AFCSGVDL-------TSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGF 114
            R  F +G D+       TSA      +    +T  + ++ R R   + AI G     G 
Sbjct: 66  RRDVFTAGNDIAELYAPKTSAARY--AEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGC 123

Query: 115 EIALACDV 122
            ++L CD 
Sbjct: 124 AVSLCCDY 131

Length = 278

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 10/117 (8%)

Query: 12  VTRDPMGIAYVTINRP-KSLNSLTRSMMADMAQAFKSLDKDESVL-VIILSGSGRAFCSG 69
           +T    GIA +TI+ P + +N+L       +++    L +D+S+  ++++SG    F +G
Sbjct: 4   LTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAG 63

Query: 70  VDLT------SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALAC 120
            D++      +A +      +       A++E    P++ AI G  +  G E+ALAC
Sbjct: 64  ADISMLAACQTAGEAKALAQQGQVL--FAELEALPIPVVAAIHGACLGGGLELALAC 118

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 22/141 (15%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-------RAFCSGV 70
           G   +  +RP+  N+     + ++ +A         V  ++L+G+G        AFCSG 
Sbjct: 34  GTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGG 93

Query: 71  DL-TSAEDVFK-GDVKDVETDTVAQMERCR------------KPIIGAISGFAVTAGFEI 116
           D      D ++  +  + +T   A+  R              K +I  + G+A   G  +
Sbjct: 94  DQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSL 153

Query: 117 ALACDVLVAAKG-AKFIDTHA 136
            + CD+ +A++  A+F  T A
Sbjct: 154 HVVCDLTLASREHARFKQTDA 174

Length = 302

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
PLN02888	265	enoyl-CoA hydratase	100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
PLN02921	327	naphthoate synthase	100.0
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.98
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	99.98
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	99.97
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	99.97
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	99.97
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	99.96
KOG1684	401	consensus Enoyl-CoA hydratase [Lipid transport and	99.93
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	99.93
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	99.93
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.7
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.67
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.56
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.55
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.51
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.42
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.39
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	99.27
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.13
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.13
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.13
PRK10949	618	protease 4; Provisional	98.3
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	98.24
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	98.06
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	98.05
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	98.0
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	97.99
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	97.84
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	97.81
PRK11778	330	putative inner membrane peptidase; Provisional	97.79
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	97.66
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	97.53
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	97.53
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	97.48
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	97.44
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	97.38
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	97.33
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	97.31
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	97.26
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	97.25
PRK10949	618	protease 4; Provisional	97.21
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	97.17
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	97.16
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	97.16
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	97.01
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	96.93
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	96.87
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	96.75
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	96.64
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	96.64
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	96.59
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	96.48
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	96.43
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	96.19
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	96.11
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	95.9
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	95.89
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	95.84
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	95.17
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	95.15
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	94.33
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	93.66
COG0074	293	SucD Succinyl-CoA synthetase, alpha subunit [Energ	92.62
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	91.55
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	91.46
PF13607	138	Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin	91.33
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	88.93
PLN02522	608	ATP citrate (pro-S)-lyase	87.33
PTZ00187	317	succinyl-CoA synthetase alpha subunit; Provisional	87.15
PF02601	319	Exonuc_VII_L: Exonuclease VII, large subunit; Inte	84.39
TIGR00237	432	xseA exodeoxyribonuclease VII, large subunit. This	82.5

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=2e-39  Score=244.86  Aligned_cols=143  Identities=76%  Similarity=1.111  Sum_probs=127.0

Q ss_pred             CCCCCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc
Q 032207            1 MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK   80 (145)
Q Consensus         1 m~~~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~   80 (145)
                      |+++.+++.+.++..+++|++|+||||++.|++|.+|+.+|.+++++++.|+++|+|||+|.|++||+|.|++++.....
T Consensus         2 ~~~~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~   81 (265)
T PLN02888          2 MTQTVSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFK   81 (265)
T ss_pred             ccccCCCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhcc
Confidence            78889999999997448999999999999999999999999999999999999999999999999999999998653222


Q ss_pred             cCcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           81 GDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      ........+.+..+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++++
T Consensus        82 ~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~  144 (265)
T PLN02888         82 GDVKDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPS  144 (265)
T ss_pred             chhhHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCC
Confidence            221222345677889999999999999999999999999999999999999999999999875

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=3.7e-39  Score=244.52  Aligned_cols=143  Identities=24%  Similarity=0.398  Sum_probs=126.0

Q ss_pred             CCCCCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc
Q 032207            1 MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK   80 (145)
Q Consensus         1 m~~~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~   80 (145)
                      |++-..++.+.++++ ++|++|+||||+++|++|.+|+.+|.+++++++.|+++|+|||+|.|++||+|.|++++.....
T Consensus         1 ~~~~~~~~~i~~~~~-~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~   79 (275)
T PRK09120          1 MSYENRWDTVKVEVE-DGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETD   79 (275)
T ss_pred             CCcccccccEEEEEE-CCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccc
Confidence            777777899999997 8999999999999999999999999999999999999999999999999999999998643221


Q ss_pred             cC-c------ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           81 GD-V------KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        81 ~~-~------~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      .. .      ....++++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~  150 (275)
T PRK09120         80 AQPEILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGG  150 (275)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCc
Confidence            11 0      1123456778899999999999999999999999999999999999999999999988763

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.1e-38  Score=240.88  Aligned_cols=139  Identities=22%  Similarity=0.374  Sum_probs=121.9

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC---
Q 032207            6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD---   82 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~---   82 (145)
                      +++.+.++.++++|++|+||||+++|+++.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++.......   
T Consensus         3 ~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   82 (265)
T PRK05674          3 DFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNT   82 (265)
T ss_pred             CcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchh
Confidence            47789999854789999999999999999999999999999999999999999999999999999999875321111   


Q ss_pred             ---cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           83 ---VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        83 ---~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                         ....+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++
T Consensus        83 ~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~  147 (265)
T PRK05674         83 NLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAV  147 (265)
T ss_pred             hhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcch
Confidence               01223566778999999999999999999999999999999999999999999999998763

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-38  Score=238.95  Aligned_cols=141  Identities=24%  Similarity=0.473  Sum_probs=122.8

Q ss_pred             CCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC-
Q 032207            4 TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD-   82 (145)
Q Consensus         4 ~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~-   82 (145)
                      ..+++.+.++..+++|++|+||||+++|++|.+|+.+|.++++++++|+++|+|||+|.|++||+|.|++++....... 
T Consensus         3 ~~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~   82 (261)
T PRK08138          3 STATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEM   82 (261)
T ss_pred             CCCCCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHH
Confidence            3456667888755889999999999999999999999999999999999999999999999999999999875422111 


Q ss_pred             cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           83 VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      .....++++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus        83 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  144 (261)
T PRK08138         83 YLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGA  144 (261)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCC
Confidence            12234567788999999999999999999999999999999999999999999999988764

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-38  Score=238.78  Aligned_cols=137  Identities=30%  Similarity=0.445  Sum_probs=120.0

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcccC---
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKGD---   82 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~~---   82 (145)
                      +.++.++..+++|++|+||||++.|++|.+|+++|.+++++++.|+++|+|||||.| ++||+|.|++++.......   
T Consensus         5 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~   84 (256)
T PRK06143          5 NAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEA   84 (256)
T ss_pred             cccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHH
Confidence            455788866688999999999999999999999999999999999999999999998 7999999999875422111   


Q ss_pred             cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           83 VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      ....+++++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|+|++
T Consensus        85 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~p~~  145 (256)
T PRK06143         85 FISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGIPSV  145 (256)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCCCCc
Confidence            1123356678899999999999999999999999999999999999999999999999764

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.5e-38  Score=240.83  Aligned_cols=139  Identities=29%  Similarity=0.484  Sum_probs=121.5

Q ss_pred             CCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc----
Q 032207            5 KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK----   80 (145)
Q Consensus         5 ~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~----   80 (145)
                      +.++.+.++++ ++|++|+||||+++|++|.+|+.+|.+++++++.|+++|+|||+|.|++||+|.|++++.....    
T Consensus         3 ~~~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~   81 (272)
T PRK06142          3 TTYESFTVELA-DHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGK   81 (272)
T ss_pred             CCcceEEEEec-CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccc
Confidence            35677999986 9999999999999999999999999999999999999999999999999999999998754210    


Q ss_pred             ---cC----c---ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           81 ---GD----V---KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        81 ---~~----~---~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                         ..    .   ...+++++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~  155 (272)
T PRK06142         82 DGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADV  155 (272)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCc
Confidence               00    0   1123456678899999999999999999999999999999999999999999999988763

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.3e-38  Score=237.25  Aligned_cols=137  Identities=32%  Similarity=0.538  Sum_probs=120.3

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc-Cccc
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG-DVKD   85 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~-~~~~   85 (145)
                      ++.+.++++ ++|++|+||||++.|++|.+|+++|.+++++++.|+++|+|||+|.|+.||+|.|++++...... ....
T Consensus         3 ~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (257)
T PRK05862          3 YETILVETR-GRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKG   81 (257)
T ss_pred             CceEEEEee-CCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHH
Confidence            356888886 89999999999999999999999999999999999999999999999999999999987542211 1112


Q ss_pred             HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           86 VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        86 ~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      .+.+.+.+|..+|||+||++||+|+|||++|+++||+||++++++|++||+++|+.|+.
T Consensus        82 ~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~  140 (257)
T PRK05862         82 DYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGM  140 (257)
T ss_pred             HHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCc
Confidence            33456778999999999999999999999999999999999999999999999988763

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.6e-38  Score=237.01  Aligned_cols=137  Identities=31%  Similarity=0.529  Sum_probs=120.8

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc---C-
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG---D-   82 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~---~-   82 (145)
                      ++.+.++.+ ++|++||||||+++|++|.+|+++|.+++++++.|+++|+|||||.|++||+|.|++++......   . 
T Consensus         3 ~~~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (262)
T PRK05995          3 YETLEIEQR-GQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDEN   81 (262)
T ss_pred             CceEEEEee-CCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhh
Confidence            566888886 89999999999999999999999999999999999999999999999999999999987432111   1 


Q ss_pred             c--ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           83 V--KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        83 ~--~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      .  ...+.+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.
T Consensus        82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  145 (262)
T PRK05995         82 RADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPAT  145 (262)
T ss_pred             hhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccc
Confidence            1  1234567788999999999999999999999999999999999999999999999987753

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.2e-38  Score=236.24  Aligned_cols=134  Identities=31%  Similarity=0.479  Sum_probs=118.6

Q ss_pred             EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHH
Q 032207           10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETD   89 (145)
Q Consensus        10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~   89 (145)
                      +.++.+ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||+|.|+.||+|.|++++.........+.+.+
T Consensus         2 i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   80 (248)
T PRK06072          2 IKVESR-EGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYP   80 (248)
T ss_pred             eEEEEE-CCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHH
Confidence            466776 8999999999999999999999999999999999999999999999999999999998754221122233456


Q ss_pred             HHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           90 TVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        90 ~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      ++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus        81 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~  135 (248)
T PRK06072         81 IIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDT  135 (248)
T ss_pred             HHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCc
Confidence            7778999999999999999999999999999999999999999999999988753

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.6e-38  Score=235.75  Aligned_cols=134  Identities=28%  Similarity=0.455  Sum_probs=118.9

Q ss_pred             cEEEEEcCC---cEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc--Cc
Q 032207            9 LILVTRDPM---GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG--DV   83 (145)
Q Consensus         9 ~i~~~~~~~---~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~--~~   83 (145)
                      .+.++++ +   +|++|+||||++.|++|.+|+++|.++++++++|+++|+|||+|.|++||+|.|++++......  ..
T Consensus         4 ~i~~~~~-~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~   82 (251)
T PRK06023          4 HILVERP-GAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSF   82 (251)
T ss_pred             eEEEEee-cCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhh
Confidence            5888886 5   4999999999999999999999999999999999999999999999999999999987542111  11


Q ss_pred             ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           84 KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      ....++++.++.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|+.|+
T Consensus        83 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~  142 (251)
T PRK06023         83 GSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPE  142 (251)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCC
Confidence            233456778899999999999999999999999999999999999999999999998765

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.7e-38  Score=236.01  Aligned_cols=135  Identities=31%  Similarity=0.456  Sum_probs=119.2

Q ss_pred             cEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC---ccc
Q 032207            9 LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD---VKD   85 (145)
Q Consensus         9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~---~~~   85 (145)
                      .+.++.+ ++|++|+||||+++|++|.+|+++|.++++.+++|+++|+|||+|.|++||+|.|++++.......   ...
T Consensus         4 ~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   82 (249)
T PRK05870          4 PVLLDVD-DGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLR   82 (249)
T ss_pred             cEEEEcc-CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHH
Confidence            4777876 899999999999999999999999999999999999999999999999999999999876432211   112


Q ss_pred             HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           86 VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        86 ~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      .+.+.+..+.++|||+||++||+|+|||++|+++||+||++++++|++||+++|++|++
T Consensus        83 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~  141 (249)
T PRK05870         83 RIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGG  141 (249)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCC
Confidence            33455677889999999999999999999999999999999999999999999998763

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=2.1e-38  Score=238.26  Aligned_cols=137  Identities=35%  Similarity=0.572  Sum_probs=121.7

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhh-hccc---
Q 032207            6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED-VFKG---   81 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~-~~~~---   81 (145)
                      .+..+.++.. ++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.. ....   
T Consensus         3 ~~~~~~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~   81 (257)
T COG1024           3 TYETILVERE-DGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAE   81 (257)
T ss_pred             CCCeeEEEee-CCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHH
Confidence            4567888886 7799999999999999999999999999999999999999999999999999999999874 1111   


Q ss_pred             CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           82 DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      ......++++.++.++|||+||++||+|+|||++|+++||+|||+++++|++||+++|+.||
T Consensus        82 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg  143 (257)
T COG1024          82 NLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPG  143 (257)
T ss_pred             HHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCC
Confidence            11223345788999999999999999999999999999999999999999999999999885

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.1e-38  Score=236.28  Aligned_cols=137  Identities=36%  Similarity=0.585  Sum_probs=122.0

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC-ccc
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD-VKD   85 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~-~~~   85 (145)
                      ++.+.++.+ ++|++|+||||+++|++|.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++....... ...
T Consensus         3 ~~~v~~~~~-~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~   81 (258)
T PRK06190          3 EPILLVETH-DRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQD   81 (258)
T ss_pred             CceEEEEee-CCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHH
Confidence            567888987 899999999999999999999999999999999999999999999999999999999875422111 112


Q ss_pred             HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           86 VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        86 ~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      ..++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus        82 ~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~  140 (258)
T PRK06190         82 ALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGW  140 (258)
T ss_pred             HHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCc
Confidence            34567788999999999999999999999999999999999999999999999988874

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.9e-38  Score=237.43  Aligned_cols=142  Identities=32%  Similarity=0.472  Sum_probs=124.3

Q ss_pred             CCCCCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhc
Q 032207            1 MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVF   79 (145)
Q Consensus         1 m~~~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~   79 (145)
                      |.-+..++.+.++++ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||+|.| ++||+|.|++++....
T Consensus         1 ~~~~~~~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~   79 (262)
T PRK06144          1 MAMTTSTDELLLEVR-GGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFS   79 (262)
T ss_pred             CCcccCCCceEEEee-CCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhcc
Confidence            555667788999987 89999999999999999999999999999999999999999999998 7999999999875422


Q ss_pred             ccC----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEecccee-eeecCC
Q 032207           80 KGD----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHAR-LVCKIS  143 (145)
Q Consensus        80 ~~~----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~-~G~~~g  143 (145)
                      ...    ....+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||++ +|++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~  148 (262)
T PRK06144         80 TAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLS  148 (262)
T ss_pred             chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCC
Confidence            111    1123456677889999999999999999999999999999999999999999997 888765

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=5.8e-38  Score=235.82  Aligned_cols=137  Identities=26%  Similarity=0.493  Sum_probs=118.8

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcccC--c
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKGD--V   83 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~~--~   83 (145)
                      ++.+.++++ ++|++||||||+++|++|.+|+++|.+++++++.|+++|+|||+|.| ++||+|.|++++.......  .
T Consensus         1 ~~~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~   79 (256)
T TIGR03210         1 YEDILYEKR-NGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTI   79 (256)
T ss_pred             CCceEEEee-CCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHH
Confidence            356888886 89999999999999999999999999999999999999999999998 7999999999874321111  1


Q ss_pred             ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeee-cCCC
Q 032207           84 KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVC-KISC  144 (145)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~-~~g~  144 (145)
                      .....+++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|+ |+++
T Consensus        80 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~  141 (256)
T TIGR03210        80 GLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGY  141 (256)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCcc
Confidence            122355778899999999999999999999999999999999999999999999985 4543

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.7e-38  Score=236.10  Aligned_cols=138  Identities=32%  Similarity=0.458  Sum_probs=123.3

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc--Cc
Q 032207            6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG--DV   83 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~--~~   83 (145)
                      ..+.+.++++ ++|++|+||||++.|++|.+++++|.++++.+++|+++|+|||+|.|++||+|.|++++......  ..
T Consensus         3 ~~~~i~~~~~-~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   81 (259)
T PRK06688          3 MVTDLLVELE-DGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDE   81 (259)
T ss_pred             CCCceEEEEE-CCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHH
Confidence            4566888887 89999999999999999999999999999999999999999999999999999999987643222  12


Q ss_pred             ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           84 KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      ...++++++++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus        82 ~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~  142 (259)
T PRK06688         82 LAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDA  142 (259)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCc
Confidence            2345677888999999999999999999999999999999999999999999999998763

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=6.9e-38  Score=236.56  Aligned_cols=138  Identities=28%  Similarity=0.467  Sum_probs=121.4

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCc--
Q 032207            6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDV--   83 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~--   83 (145)
                      ..+.+.++.+ ++|++|+||||+++|++|.+|+++|.+++++++.|+++|+|||+|.|++||+|.|++++........  
T Consensus         9 ~~~~~~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   87 (266)
T PRK08139          9 EAPLLLREDR-DGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFR   87 (266)
T ss_pred             cCCceEEEee-CCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHH
Confidence            4678888886 9999999999999999999999999999999999999999999999999999999998753221111  


Q ss_pred             --ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           84 --KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        84 --~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                        ...+.+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++++.
T Consensus        88 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  150 (266)
T PRK08139         88 ALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCST  150 (266)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCc
Confidence              1223456778999999999999999999999999999999999999999999999987653

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.1e-38  Score=237.06  Aligned_cols=139  Identities=34%  Similarity=0.525  Sum_probs=121.3

Q ss_pred             CCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC--
Q 032207            5 KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD--   82 (145)
Q Consensus         5 ~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~--   82 (145)
                      ..++.+.+++++++|++|+||||++.|+++.+|+.+|.+++++++.|+++|+|||||.|++||+|.|++++.......  
T Consensus         8 ~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   87 (268)
T PRK07327          8 ADYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEV   87 (268)
T ss_pred             CCCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHH
Confidence            456789998854789999999999999999999999999999999999999999999999999999999875421111  


Q ss_pred             ---cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           83 ---VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        83 ---~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                         ......+++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+
T Consensus        88 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~  151 (268)
T PRK07327         88 RARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAG  151 (268)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCC
Confidence               1112345677889999999999999999999999999999999999999999999998764

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=6.2e-38  Score=235.54  Aligned_cols=134  Identities=27%  Similarity=0.501  Sum_probs=118.4

Q ss_pred             cEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc-CcccHH
Q 032207            9 LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG-DVKDVE   87 (145)
Q Consensus         9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~-~~~~~~   87 (145)
                      .+.++++ ++|++||||||+++|++|.+|+++|.++++++++|+++|+|||+|.|++||+|.|++++...... ......
T Consensus         3 ~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   81 (255)
T PRK09674          3 ELLVSRQ-QRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPR   81 (255)
T ss_pred             eEEEEeE-CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHH
Confidence            5677776 89999999999999999999999999999999999999999999999999999999986532111 111233


Q ss_pred             HHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           88 TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        88 ~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      .++++++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|+.|+
T Consensus        82 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~  137 (255)
T PRK09674         82 PQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPG  137 (255)
T ss_pred             HHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCC
Confidence            55678899999999999999999999999999999999999999999999998765

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.1e-38  Score=235.77  Aligned_cols=135  Identities=30%  Similarity=0.466  Sum_probs=119.8

Q ss_pred             cEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc------C
Q 032207            9 LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG------D   82 (145)
Q Consensus         9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~------~   82 (145)
                      .+.++++ ++|++|+||||++.|++|.+|+++|.++++++++|+++|+|||+|.|+.||+|.|++++......      .
T Consensus         4 ~~~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~   82 (260)
T PRK07511          4 ELLSRRE-GSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAA   82 (260)
T ss_pred             eeEEEeE-CCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHH
Confidence            4778876 89999999999999999999999999999999999999999999999999999999987542111      1


Q ss_pred             cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           83 VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      ....+++++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++
T Consensus        83 ~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~  144 (260)
T PRK07511         83 SIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDG  144 (260)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCc
Confidence            12234567788999999999999999999999999999999999999999999999998764

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-37  Score=234.92  Aligned_cols=137  Identities=32%  Similarity=0.506  Sum_probs=119.4

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC----
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD----   82 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~----   82 (145)
                      ++.+.+++++++|++|+||||+++|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|.|++++.......    
T Consensus         3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   82 (262)
T PRK07468          3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATR   82 (262)
T ss_pred             cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhH
Confidence            4568888754689999999999999999999999999999999999999999999999999999999865321111    


Q ss_pred             --cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           83 --VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        83 --~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                        ....+.++++++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|+.|+
T Consensus        83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~  145 (262)
T PRK07468         83 IEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPA  145 (262)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcc
Confidence              1122345678899999999999999999999999999999999999999999999998765

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.1e-38  Score=234.89  Aligned_cols=135  Identities=27%  Similarity=0.439  Sum_probs=118.5

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC---c
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD---V   83 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~---~   83 (145)
                      ++.|.++++ ++|++|+||||++.|++|.+|+++|.+++++++  +++|+|||||.|++||+|.|++++.......   .
T Consensus         1 ~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~   77 (255)
T PRK08150          1 PSLVSYELD-GGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHH   77 (255)
T ss_pred             CceEEEEee-CCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHH
Confidence            356888886 899999999999999999999999999999997  7899999999999999999999875422111   1


Q ss_pred             ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           84 KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      ...+++++.+|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++++.
T Consensus        78 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~  138 (255)
T PRK08150         78 SRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGG  138 (255)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCc
Confidence            2234567788999999999999999999999999999999999999999999999987753

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.4e-38  Score=236.38  Aligned_cols=134  Identities=31%  Similarity=0.509  Sum_probs=117.9

Q ss_pred             cEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhccc--C---
Q 032207            9 LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKG--D---   82 (145)
Q Consensus         9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~--~---   82 (145)
                      .+.++.+ ++|++|+||||+++|++|.+|+++|.++++.+++|+++|+|||||.| ++||+|.|++++......  .   
T Consensus         4 ~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~   82 (260)
T PRK05980          4 TVLIEIR-DGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVAL   82 (260)
T ss_pred             eEEEEEE-CCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhH
Confidence            5888886 99999999999999999999999999999999999999999999998 799999999987542211  0   


Q ss_pred             --cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           83 --VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        83 --~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                        .....++++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+
T Consensus        83 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~  145 (260)
T PRK05980         83 RDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPT  145 (260)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCC
Confidence              1112245677889999999999999999999999999999999999999999999998775

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-37  Score=235.06  Aligned_cols=139  Identities=33%  Similarity=0.464  Sum_probs=118.8

Q ss_pred             CCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc-Cc
Q 032207            5 KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG-DV   83 (145)
Q Consensus         5 ~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~-~~   83 (145)
                      ..++.+.++++ ++|++|+||||+++|++|.+|+++|.+++++++.|+++|+|||||.|++||+|.|++++...... ..
T Consensus         2 ~~~~~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   80 (263)
T PRK07799          2 EGGPHALVEQR-GHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSF   80 (263)
T ss_pred             CCCceEEEEEE-CCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchh
Confidence            45677899987 89999999999999999999999999999999999999999999999999999999987643211 10


Q ss_pred             cc---HHH--HHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           84 KD---VET--DTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        84 ~~---~~~--~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      ..   ...  ..+.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  146 (263)
T PRK07799         81 KDGSYDPSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMG  146 (263)
T ss_pred             hhhhhhhhHHHHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCc
Confidence            10   011  12345678999999999999999999999999999999999999999999987653

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.5e-38  Score=235.66  Aligned_cols=140  Identities=27%  Similarity=0.438  Sum_probs=122.5

Q ss_pred             CCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhc-ccC
Q 032207            4 TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVF-KGD   82 (145)
Q Consensus         4 ~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~-~~~   82 (145)
                      +..+..+.++.+ ++|++|+||||++.|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++.... ...
T Consensus         2 ~~~~~~i~~~~~-~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~   80 (260)
T PRK07827          2 TPVDTLVRYAVD-GGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPY   80 (260)
T ss_pred             CCCCcceEEEee-CCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCch
Confidence            345667888886 899999999999999999999999999999999999999999999999999999999875421 111


Q ss_pred             -----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           83 -----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        83 -----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                           ....+.++++++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  147 (260)
T PRK07827         81 DAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAI  147 (260)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCc
Confidence                 11233566788999999999999999999999999999999999999999999999988763

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-37  Score=233.77  Aligned_cols=136  Identities=31%  Similarity=0.446  Sum_probs=116.9

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcccC-cc
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKGD-VK   84 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~~-~~   84 (145)
                      ++.+.++++ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||+|.| ++||+|.|++++....... ..
T Consensus         3 ~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~   81 (259)
T PRK06494          3 LPFSTVERK-GHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPE   81 (259)
T ss_pred             CceeEEEeE-CCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhh
Confidence            467888886 89999999999999999999999999999999999999999999998 7999999999865422111 11


Q ss_pred             cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           85 DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      ..+.. +..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.
T Consensus        82 ~~~~~-~~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  140 (259)
T PRK06494         82 SGFGG-LTSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALA  140 (259)
T ss_pred             HHHHH-HHHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCc
Confidence            12222 334568999999999999999999999999999999999999999999988764

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-37  Score=233.31  Aligned_cols=135  Identities=23%  Similarity=0.392  Sum_probs=119.4

Q ss_pred             CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc-Cc---
Q 032207            8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG-DV---   83 (145)
Q Consensus         8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~-~~---   83 (145)
                      +++.++.+ ++|++|+||||++.|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|.|++++...... ..   
T Consensus         2 ~~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   80 (255)
T PRK07260          2 EHIIYEVE-DDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSL   80 (255)
T ss_pred             CceEEEEE-CCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhH
Confidence            46788886 89999999999999999999999999999999999999999999999999999999987542211 11   


Q ss_pred             ---ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           84 ---KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        84 ---~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                         .+..++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+
T Consensus        81 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~  143 (255)
T PRK07260         81 VKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPD  143 (255)
T ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCC
Confidence               112355677899999999999999999999999999999999999999999999998765

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.5e-37  Score=235.76  Aligned_cols=140  Identities=31%  Similarity=0.465  Sum_probs=120.8

Q ss_pred             CCCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc--
Q 032207            3 QTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK--   80 (145)
Q Consensus         3 ~~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~--   80 (145)
                      +-++.+.+.++..+++|++|+||||+++|+++.+|+++|.++++++++|+++|+|||+|.|++||+|.|++++.....  
T Consensus         4 ~~~~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~   83 (276)
T PRK05864          4 YRSTMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVE   83 (276)
T ss_pred             CCCCCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccc
Confidence            345677788887338999999999999999999999999999999999999999999999999999999998642110  


Q ss_pred             ----cC----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecC
Q 032207           81 ----GD----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKI  142 (145)
Q Consensus        81 ----~~----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~  142 (145)
                          ..    .....++++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p  153 (276)
T PRK05864         84 GLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTA  153 (276)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCC
Confidence                00    011234566788899999999999999999999999999999999999999999999875

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-37  Score=238.76  Aligned_cols=139  Identities=27%  Similarity=0.400  Sum_probs=121.6

Q ss_pred             CCCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC
Q 032207            3 QTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD   82 (145)
Q Consensus         3 ~~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~   82 (145)
                      .+.+++.+.++.+ ++|++|+||||+++|+++.+|+.+|.+++++++.|+++|+|||+|.|++||+|.|++++.......
T Consensus         5 ~~~~~~~v~~e~~-~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~   83 (302)
T PRK08272          5 DLDNLKTMTYEVT-GRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSG   83 (302)
T ss_pred             ccCCCCeEEEEeE-CCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccc
Confidence            3566788999987 899999999999999999999999999999999999999999999999999999999875422100


Q ss_pred             --------------------c--------ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEecc
Q 032207           83 --------------------V--------KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDT  134 (145)
Q Consensus        83 --------------------~--------~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~p  134 (145)
                                          .        ....++.+.++.++|||+||+|||+|+|||++|+++||+|||+++++|++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~p  163 (302)
T PRK08272         84 GGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYP  163 (302)
T ss_pred             ccccccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCc
Confidence                                0        112235677889999999999999999999999999999999999999999


Q ss_pred             ceee-eecC
Q 032207          135 HARL-VCKI  142 (145)
Q Consensus       135 e~~~-G~~~  142 (145)
                      |+++ |+|+
T Consensus       164 e~~~gg~~~  172 (302)
T PRK08272        164 PTRVWGVPA  172 (302)
T ss_pred             chhcccCCh
Confidence            9997 7775

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-37  Score=235.07  Aligned_cols=134  Identities=28%  Similarity=0.469  Sum_probs=117.5

Q ss_pred             cEEEEEcCCcEEEEEEcCCCCCCCCCH-HHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc------
Q 032207            9 LILVTRDPMGIAYVTINRPKSLNSLTR-SMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG------   81 (145)
Q Consensus         9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~-~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~------   81 (145)
                      .+.++++ ++|++|+||||+++|+++. +|+++|.+++++++.|+++|+|||+|.|++||+|.|++++......      
T Consensus         4 ~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (266)
T PRK09245          4 FLLVERD-GHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPA   82 (266)
T ss_pred             ceEEEEE-CCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccch
Confidence            4788886 8999999999999999995 9999999999999999999999999999999999999987542110      


Q ss_pred             C----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           82 D----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        82 ~----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      .    ....+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~  148 (266)
T PRK09245         83 DIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPG  148 (266)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCC
Confidence            0    0111245667889999999999999999999999999999999999999999999998765

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-37  Score=233.76  Aligned_cols=133  Identities=24%  Similarity=0.405  Sum_probs=114.5

Q ss_pred             EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC---cccH
Q 032207           10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD---VKDV   86 (145)
Q Consensus        10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~---~~~~   86 (145)
                      |.++.+ ++|++|+||||++.|++|.+|+++|.++++++++|+++|+|||+|.|++||+|.|++++.......   ....
T Consensus         1 ~~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   79 (255)
T PRK06563          1 VSRERR-GHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEG   79 (255)
T ss_pred             CeEEEE-CCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhh
Confidence            356776 899999999999999999999999999999999999999999999999999999999875422111   1111


Q ss_pred             HHHHH-HHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           87 ETDTV-AQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        87 ~~~~~-~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      ..+.+ ..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+
T Consensus        80 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~  137 (255)
T PRK06563         80 GIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPF  137 (255)
T ss_pred             hhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCC
Confidence            22333 3588999999999999999999999999999999999999999999998764

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.5e-37  Score=234.24  Aligned_cols=135  Identities=33%  Similarity=0.608  Sum_probs=117.8

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc---Cc
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG---DV   83 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~---~~   83 (145)
                      ++.+.++.+ ++|++|+||||+++|++|.+|+++|.+++++++ |+++|+|||+|.|++||+|.|++++......   ..
T Consensus         3 ~~~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   80 (262)
T PRK08140          3 YETILLAIE-AGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDL   80 (262)
T ss_pred             CceEEEEeE-CCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhh
Confidence            456888887 899999999999999999999999999999999 9999999999999999999999986432111   10


Q ss_pred             c----cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           84 K----DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        84 ~----~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      .    ..+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus        81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~  144 (262)
T PRK08140         81 GESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPD  144 (262)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCC
Confidence            1    11234567889999999999999999999999999999999999999999999998765

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-37  Score=234.00  Aligned_cols=137  Identities=31%  Similarity=0.466  Sum_probs=119.2

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCc---
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDV---   83 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~---   83 (145)
                      ++.+.++++ ++|++|+||||++.|++|.+|+++|.++++++++|+++|+|||+|.|++||+|.|++++........   
T Consensus         2 ~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   80 (262)
T PRK07509          2 MDRVSVTIE-DGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLL   80 (262)
T ss_pred             CceEEEEee-CCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhH
Confidence            356888886 9999999999999999999999999999999999999999999999999999999998754211110   


Q ss_pred             c-------cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           84 K-------DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        84 ~-------~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      .       ..+.+++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~  148 (262)
T PRK07509         81 FKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDM  148 (262)
T ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCc
Confidence            0       122345567789999999999999999999999999999999999999999999998764

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=1.9e-37  Score=233.46  Aligned_cols=137  Identities=31%  Similarity=0.577  Sum_probs=120.7

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcccC---
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKGD---   82 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~~---   82 (145)
                      ++.+.++++ ++|++|+||||++.|++|.+|+.+|.++++++++|+++|+|||+|.| ++||+|.|++++.......   
T Consensus         3 ~~~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~   81 (260)
T PRK05809          3 LKNVILEKE-GHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRK   81 (260)
T ss_pred             cceEEEEEe-CCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHH
Confidence            556888886 89999999999999999999999999999999999999999999999 9999999999875422111   


Q ss_pred             cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           83 VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      ......+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.
T Consensus        82 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~  143 (260)
T PRK05809         82 FGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGF  143 (260)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCc
Confidence            11223456788999999999999999999999999999999999999999999999998763

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=1.1e-37  Score=233.75  Aligned_cols=133  Identities=22%  Similarity=0.282  Sum_probs=115.5

Q ss_pred             EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHH
Q 032207           10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETD   89 (145)
Q Consensus        10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~   89 (145)
                      +.++++ ++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||+|.|++||+|.|++++.............+
T Consensus         3 v~~~~~-~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~   80 (251)
T TIGR03189         3 VWLERD-GKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHK   80 (251)
T ss_pred             EEEEee-CCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHH
Confidence            677876 889999999997 699999999999999999999999999999999999999999987532110111222355


Q ss_pred             HHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           90 TVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        90 ~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      ++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|+.+++
T Consensus        81 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~  135 (251)
T TIGR03189        81 LVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA  135 (251)
T ss_pred             HHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc
Confidence            6778999999999999999999999999999999999999999999999886554

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-37  Score=237.68  Aligned_cols=137  Identities=33%  Similarity=0.510  Sum_probs=119.1

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc------
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK------   80 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~------   80 (145)
                      ++.+.++++ ++|++|+||||++.|++|.+|+.+|.++++.+++|+++|+|||+|.|++||+|.|++++.....      
T Consensus         3 ~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (296)
T PRK08260          3 YETIRYDVA-DGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRT   81 (296)
T ss_pred             cceEEEeee-CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhccccccccc
Confidence            456888886 8999999999999999999999999999999999999999999999999999999998643110      


Q ss_pred             ----------cC----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           81 ----------GD----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        81 ----------~~----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                                ..    ......+++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~  159 (296)
T PRK08260         82 PVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEA  159 (296)
T ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCc
Confidence                      00    01112356778899999999999999999999999999999999999999999999987753

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.6e-37  Score=234.92  Aligned_cols=139  Identities=28%  Similarity=0.513  Sum_probs=121.2

Q ss_pred             CCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhccc-
Q 032207            4 TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKG-   81 (145)
Q Consensus         4 ~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~-   81 (145)
                      +...+.+.++++ ++|++|+||||+++|+++.+|+++|.++++++++|+++|+|||+|.| ++||+|.|++++...... 
T Consensus         7 ~~~~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~   85 (269)
T PRK06127          7 SSPTGKLLAEKT-GGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDA   85 (269)
T ss_pred             CCCCCceEEEEE-CCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccch
Confidence            445677899987 89999999999999999999999999999999999999999999998 799999999987542111 


Q ss_pred             C----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           82 D----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        82 ~----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      .    ......+++.+|..+|||+||++||+|+|||++|+++||+||++++++|++||+++|+.|+
T Consensus        86 ~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~  151 (269)
T PRK06127         86 EAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYG  151 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCC
Confidence            1    1122345667889999999999999999999999999999999999999999999998664

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.1e-37  Score=229.86  Aligned_cols=135  Identities=27%  Similarity=0.414  Sum_probs=116.6

Q ss_pred             CcEEEEEc----CCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC-
Q 032207            8 NLILVTRD----PMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD-   82 (145)
Q Consensus         8 ~~i~~~~~----~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~-   82 (145)
                      ++|.++..    +++|++|+||||+ .|+|+.+|+.+|.++++++++|+++|+|||||.|++||+|+|++++....... 
T Consensus         3 ~~~~~~~~~~~~~~~i~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~   81 (222)
T PRK05869          3 EFVNVVVSDGSQDAGLATLLLSRPP-TNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEA   81 (222)
T ss_pred             cchhhhcccCcccCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhH
Confidence            44555543    4889999999998 59999999999999999999999999999999999999999999875422111 


Q ss_pred             --cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           83 --VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        83 --~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                        ..+.++++++++.++|||+||++||+|+|||++|+++||+||++++++|++||+++|++|+
T Consensus        82 ~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~  144 (222)
T PRK05869         82 DTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPS  144 (222)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCC
Confidence              1123356778899999999999999999999999999999999999999999999998765

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=1.3e-37  Score=236.02  Aligned_cols=138  Identities=31%  Similarity=0.567  Sum_probs=116.7

Q ss_pred             CCCcEEEEE--cCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc--
Q 032207            6 SENLILVTR--DPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG--   81 (145)
Q Consensus         6 ~~~~i~~~~--~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~--   81 (145)
                      .|+.+++-.  .+++|++|+||||+++|+++.+|+++|.++++++++|+++|+|||+|.|++||+|+|++++......  
T Consensus         3 ~~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~   82 (275)
T PLN02664          3 SYKTLEIIQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSS   82 (275)
T ss_pred             CccceEEEEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccc
Confidence            444444322  2388999999999999999999999999999999999999999999999999999999987542110  


Q ss_pred             --C-------c---ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           82 --D-------V---KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        82 --~-------~---~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                        .       .   ...+++++.+|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~  156 (275)
T PLN02664         83 SGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITAD  156 (275)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCC
Confidence              0       0   012245667889999999999999999999999999999999999999999999998775

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.2e-37  Score=233.12  Aligned_cols=137  Identities=30%  Similarity=0.526  Sum_probs=119.6

Q ss_pred             CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcccCc---
Q 032207            8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKGDV---   83 (145)
Q Consensus         8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~~~---   83 (145)
                      +.+.+++.+++|++|+||||++.|+++.+|+.+|.++++++++|+++|+|||+|.| ++||+|.|++++........   
T Consensus         3 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~   82 (260)
T PRK07657          3 QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHA   82 (260)
T ss_pred             ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHH
Confidence            47788864489999999999999999999999999999999999999999999999 59999999998753211111   


Q ss_pred             ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           84 KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      ...+++++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|+.|+.
T Consensus        83 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~  143 (260)
T PRK07657         83 VSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGA  143 (260)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCc
Confidence            1233566788999999999999999999999999999999999999999999999987764

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.5e-37  Score=232.72  Aligned_cols=138  Identities=34%  Similarity=0.491  Sum_probs=120.2

Q ss_pred             CCCcEEEEEcCC-cEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCc-
Q 032207            6 SENLILVTRDPM-GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDV-   83 (145)
Q Consensus         6 ~~~~i~~~~~~~-~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~-   83 (145)
                      .++.+.++++ + +|++|+||||+++|++|.+|+++|.+++++++.|+++|+|||+|.|++||+|.|++++........ 
T Consensus         3 ~~~~i~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~   81 (272)
T PRK06210          3 AYDAVLYEVA-DSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGR   81 (272)
T ss_pred             CcceEEEEEC-CCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCccccc
Confidence            4567899987 7 999999999999999999999999999999999999999999999999999999998754211100 


Q ss_pred             --------c----cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           84 --------K----DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        84 --------~----~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                              .    ..+++.+.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~  154 (272)
T PRK06210         82 RDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEH  154 (272)
T ss_pred             ccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCC
Confidence                    0    012345678899999999999999999999999999999999999999999999987763

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=3.3e-37  Score=230.89  Aligned_cols=137  Identities=20%  Similarity=0.331  Sum_probs=120.3

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccH
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDV   86 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   86 (145)
                      ++.+.++.+ ++|++|+||||++.|++|.+++++|.+++++++.|+++|+|||+|.|++||+|.|++++...........
T Consensus         4 ~~~~~~~~~-~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   82 (249)
T PRK07110          4 KVVELREVE-EGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFT   82 (249)
T ss_pred             CceEEEEee-CCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHh
Confidence            566777876 8999999999999999999999999999999999999999999999999999999998754322111111


Q ss_pred             HHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           87 ETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        87 ~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      .++++..+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.
T Consensus        83 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~  140 (249)
T PRK07110         83 EANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGM  140 (249)
T ss_pred             hHHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCc
Confidence            1467788999999999999999999999999999999999999999999999987764

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.2e-37  Score=233.78  Aligned_cols=136  Identities=24%  Similarity=0.461  Sum_probs=119.4

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCC-CeeEEEEEcCCCcccccCCchhhhhhccc----
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDE-SVLVIILSGSGRAFCSGVDLTSAEDVFKG----   81 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~-~v~~vvl~g~g~~F~~G~dl~~~~~~~~~----   81 (145)
                      ++.+.++++ ++|++|+||||+++|++|.+|+++|.++++.+++|+ ++|+|||+|.|++||+|.|++++......    
T Consensus         3 ~~~v~~~~~-~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~   81 (266)
T PRK05981          3 FKKVTLDFD-GGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSG   81 (266)
T ss_pred             cceEEEEeE-CCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccccc
Confidence            567888987 899999999999999999999999999999999876 49999999999999999999987542111    


Q ss_pred             -C----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           82 -D----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        82 -~----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                       .    ....+++++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~  148 (266)
T PRK05981         82 GDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPD  148 (266)
T ss_pred             chhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCC
Confidence             0    1122356778899999999999999999999999999999999999999999999998775

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=3.1e-37  Score=232.18  Aligned_cols=136  Identities=32%  Similarity=0.495  Sum_probs=116.6

Q ss_pred             CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhccc-C--c
Q 032207            8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKG-D--V   83 (145)
Q Consensus         8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~-~--~   83 (145)
                      +.+.+++++++|++|+||||+++|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|.|++++...... .  .
T Consensus         2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~   81 (259)
T TIGR01929         2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGV   81 (259)
T ss_pred             ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhH
Confidence            34778872389999999999999999999999999999999999999999999999 799999999876422111 0  0


Q ss_pred             -ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           84 -KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        84 -~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                       .....+++..+..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|+.|+
T Consensus        82 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~  142 (259)
T TIGR01929        82 HRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDG  142 (259)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCC
Confidence             011245677889999999999999999999999999999999999999999999998653

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.2e-37  Score=231.63  Aligned_cols=138  Identities=26%  Similarity=0.379  Sum_probs=120.5

Q ss_pred             CCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC--
Q 032207            5 KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD--   82 (145)
Q Consensus         5 ~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~--   82 (145)
                      ++.+.+.++.+ ++|++|+||||++.|++|.+|+.+|.++++++ .|+++|+|||+|.|++||+|.|++++.......  
T Consensus         3 ~~~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~   80 (260)
T PRK07659          3 SKMESVVVKYE-GRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKF   80 (260)
T ss_pred             CCCceEEEEee-CCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhH
Confidence            44567899987 89999999999999999999999999999999 588999999999999999999999875422111  


Q ss_pred             --cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           83 --VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        83 --~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                        ....+++++.++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.
T Consensus        81 ~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  144 (260)
T PRK07659         81 DGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDG  144 (260)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCC
Confidence              11234566778899999999999999999999999999999999999999999999998753

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.1e-37  Score=236.24  Aligned_cols=137  Identities=28%  Similarity=0.478  Sum_probs=115.9

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchh-hhh---hc--
Q 032207            6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTS-AED---VF--   79 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~-~~~---~~--   79 (145)
                      +++.+.++.+ ++|++|+||||+++|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|+++ +..   ..  
T Consensus         3 ~~~~v~~~~~-~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~   81 (298)
T PRK12478          3 DFQTLLYTTA-GPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMT   81 (298)
T ss_pred             CceEEEEecc-CCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhccc
Confidence            3567888876 8999999999999999999999999999999999999999999999999999999986 211   00  


Q ss_pred             cc--C-ccc------H---HHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceee-eecCC
Q 032207           80 KG--D-VKD------V---ETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARL-VCKIS  143 (145)
Q Consensus        80 ~~--~-~~~------~---~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~-G~~~g  143 (145)
                      ..  . ...      .   ..+.+.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++ |++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~~  158 (298)
T PRK12478         82 DGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLT  158 (298)
T ss_pred             ccccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCch
Confidence            00  0 000      0   1234567889999999999999999999999999999999999999999997 87654

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=2.3e-37  Score=232.53  Aligned_cols=132  Identities=33%  Similarity=0.616  Sum_probs=114.5

Q ss_pred             EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc--Ccc---
Q 032207           10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG--DVK---   84 (145)
Q Consensus        10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~--~~~---   84 (145)
                      |.++++ ++|++|+||||++.|++|.+|+.+|.++++++++|+ +|+|||||.|++||+|.|++++......  ...   
T Consensus         1 ~~~e~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   78 (256)
T TIGR02280         1 ILSALE-AGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTI   78 (256)
T ss_pred             CeEEEE-CCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHH
Confidence            356776 899999999999999999999999999999999998 9999999999999999999987542111  111   


Q ss_pred             -cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           85 -DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        85 -~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                       ..+.++++++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus        79 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~  138 (256)
T TIGR02280        79 ETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPD  138 (256)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCC
Confidence             11234567889999999999999999999999999999999999999999999997664

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.5e-37  Score=231.83  Aligned_cols=134  Identities=26%  Similarity=0.377  Sum_probs=117.1

Q ss_pred             cEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcccC---cc
Q 032207            9 LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKGD---VK   84 (145)
Q Consensus         9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~~---~~   84 (145)
                      .+.++++ ++|++||||||++ |+++.+|+.+|.++++++++|+++|+|||+|.| ++||+|.|++++.......   ..
T Consensus         4 ~v~~~~~-~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~   81 (258)
T PRK09076          4 ELDLEID-GHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMA   81 (258)
T ss_pred             EEEEEEE-CCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHH
Confidence            4778886 8999999999985 999999999999999999999999999999998 7899999999875321111   11


Q ss_pred             cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           85 DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      ..+.+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        82 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~  141 (258)
T PRK09076         82 RRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCA  141 (258)
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCc
Confidence            223556778999999999999999999999999999999999999999999999987763

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.8e-37  Score=231.13  Aligned_cols=134  Identities=31%  Similarity=0.481  Sum_probs=114.1

Q ss_pred             cEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccH-H
Q 032207            9 LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDV-E   87 (145)
Q Consensus         9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~-~   87 (145)
                      .+.++++ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||+|.|++||+|.|++++........... .
T Consensus         4 ~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~   82 (254)
T PRK08259          4 SVRVERN-GPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGD   82 (254)
T ss_pred             eEEEEEE-CCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhc
Confidence            3788876 8999999999999999999999999999999999999999999999999999999998653211111100 0


Q ss_pred             HHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           88 TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        88 ~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      ......+..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++++
T Consensus        83 ~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~  138 (254)
T PRK08259         83 GPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLI  138 (254)
T ss_pred             chhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCC
Confidence            11122334799999999999999999999999999999999999999999999875

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.5e-37  Score=232.46  Aligned_cols=135  Identities=28%  Similarity=0.552  Sum_probs=117.8

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc--Cc-
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG--DV-   83 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~--~~-   83 (145)
                      ++.+.++++ ++|++|+||||+ .|++|.+|+++|.++++++++|+++|+|||+|.|++||+|.|++++......  .. 
T Consensus         3 ~~~i~~~~~-~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~   80 (257)
T PRK06495          3 MSQLKLEVS-DHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLR   80 (257)
T ss_pred             cceEEEEee-CCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHH
Confidence            346888886 899999999998 6999999999999999999999999999999999999999999987542111  11 


Q ss_pred             --ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           84 --KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        84 --~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                        ....++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++++
T Consensus        81 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~  142 (257)
T PRK06495         81 AHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLAGG  142 (257)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcccc
Confidence              122345677899999999999999999999999999999999999999999999998744

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.6e-37  Score=234.93  Aligned_cols=136  Identities=28%  Similarity=0.429  Sum_probs=117.9

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc-----
Q 032207            6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK-----   80 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~-----   80 (145)
                      +++.+.++.+ ++|++|+||||+++|+++.+|+++|.++++++++|+++|+|||||.|++||+|.|++++.....     
T Consensus         2 ~~~~v~~~~~-~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~   80 (288)
T PRK08290          2 EYEYVRYEVA-GRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGP   80 (288)
T ss_pred             CCceEEEEee-CCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCcccccccccccccc
Confidence            3566888886 8999999999999999999999999999999999999999999999999999999997632111     


Q ss_pred             -------------cC----c---ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeee
Q 032207           81 -------------GD----V---KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVC  140 (145)
Q Consensus        81 -------------~~----~---~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~  140 (145)
                                   ..    .   ...+.+++..+.++|||+||+|||+|+|+|++|+++||+|||+++++|++||+++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl  160 (288)
T PRK08290         81 DQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI  160 (288)
T ss_pred             ccccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc
Confidence                         00    0   012234566789999999999999999999999999999999999999999999999


Q ss_pred             cC
Q 032207          141 KI  142 (145)
Q Consensus       141 ~~  142 (145)
                      |.
T Consensus       161 ~~  162 (288)
T PRK08290        161 PG  162 (288)
T ss_pred             Cc
Confidence            74

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=4.1e-37  Score=231.77  Aligned_cols=135  Identities=25%  Similarity=0.432  Sum_probs=118.4

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC-C-CcccccCCchhhhhhccc--C
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS-G-RAFCSGVDLTSAEDVFKG--D   82 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~-g-~~F~~G~dl~~~~~~~~~--~   82 (145)
                      ++.+.++.+ ++|++||||||+++|++|.+|+++|.++++++++|+ +|+|||+|. + ++||+|.|++++......  .
T Consensus         3 ~~~~~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~   80 (261)
T PRK11423          3 MQYVNVVTI-NKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLS   80 (261)
T ss_pred             ccceEEEeE-CCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHH
Confidence            457888886 999999999999999999999999999999999887 999999986 3 899999999986432111  1


Q ss_pred             cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           83 VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      ....+.++++++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++++
T Consensus        81 ~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~  141 (261)
T PRK11423         81 YDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYN  141 (261)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCC
Confidence            1233456788899999999999999999999999999999999999999999999999875

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=1.4e-37  Score=229.82  Aligned_cols=141  Identities=42%  Similarity=0.621  Sum_probs=122.4

Q ss_pred             CCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCc
Q 032207            4 TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDV   83 (145)
Q Consensus         4 ~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~   83 (145)
                      ..++..+.+...+++|+.|+||||+++|+|+..++.||.+++..+++|+.+.++|+||.|+.||+|.|++++......+.
T Consensus        32 ~~~~~~~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~  111 (290)
T KOG1680|consen   32 EFEPIKIELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDV  111 (290)
T ss_pred             ccCcceeEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhcccccc
Confidence            33444555555568999999999999999999999999999999999999999999999999999999999877444333


Q ss_pred             cc-HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           84 KD-VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        84 ~~-~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      .. .+.+.+..+.+.+||+|+++||+|+|||+||++.||+|||+++++|++||.++|++|+.
T Consensus       112 ~~~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~  173 (290)
T KOG1680|consen  112 SDGIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSW  173 (290)
T ss_pred             ccccccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCC
Confidence            22 23445556668999999999999999999999999999999999999999999999974

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.7e-37  Score=232.74  Aligned_cols=134  Identities=31%  Similarity=0.455  Sum_probs=117.9

Q ss_pred             CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc-C----
Q 032207            8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG-D----   82 (145)
Q Consensus         8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~-~----   82 (145)
                      +.+.++.+ ++|++|+||||++.|+++.+|+.+|.+++++++.|+++|+|||+|.|++||+|.|++++...... .    
T Consensus        17 ~~~~~~~~-~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~   95 (277)
T PRK08258         17 RHFLWEVD-DGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPEL   95 (277)
T ss_pred             cceEEEEE-CCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHH
Confidence            46888886 89999999999999999999999999999999999999999999999999999999987432111 1    


Q ss_pred             --cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecC
Q 032207           83 --VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKI  142 (145)
Q Consensus        83 --~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~  142 (145)
                        .....+++++++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|
T Consensus        96 ~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p  157 (277)
T PRK08258         96 LAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAG  157 (277)
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCC
Confidence              112234667889999999999999999999999999999999999999999999999863

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=6e-37  Score=241.72  Aligned_cols=138  Identities=22%  Similarity=0.324  Sum_probs=120.0

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC-c-
Q 032207            6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD-V-   83 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~-~-   83 (145)
                      ....|.++.. ++|++||||||+++|+||.+|+.+|.++++.+++|+++|+|||+|.|++||+|+|++++....... . 
T Consensus        35 ~~~~V~~e~~-g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~  113 (401)
T PLN02157         35 LDYQVLVEGS-GCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPD  113 (401)
T ss_pred             CCCceEEEEE-CCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchH
Confidence            4567888886 899999999999999999999999999999999999999999999999999999999876432111 0 


Q ss_pred             -----ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           84 -----KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        84 -----~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                           .....++..+|.++|||+||++||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus       114 ~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~  179 (401)
T PLN02157        114 AIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDA  179 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCc
Confidence                 1112234567899999999999999999999999999999999999999999999987753

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.1e-37  Score=229.64  Aligned_cols=131  Identities=30%  Similarity=0.491  Sum_probs=115.0

Q ss_pred             EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHH
Q 032207           10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETD   89 (145)
Q Consensus        10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~   89 (145)
                      +.++++ ++|++||||||+++|++|.+|+.+|.+++++++++ ++|+|||||.|++||+|.|+++...  .........+
T Consensus         2 ~~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~--~~~~~~~~~~   77 (243)
T PRK07854          2 IGVTRD-GQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY--ADDFPDALIE   77 (243)
T ss_pred             ceEEEe-CCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh--HHHHHHHHHH
Confidence            567776 89999999999999999999999999999999865 8999999999999999999985211  1112233456


Q ss_pred             HHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           90 TVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        90 ~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      +++++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus        78 ~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~  132 (243)
T PRK07854         78 MLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDN  132 (243)
T ss_pred             HHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCc
Confidence            7788999999999999999999999999999999999999999999999998753

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=7.8e-37  Score=231.59  Aligned_cols=137  Identities=33%  Similarity=0.484  Sum_probs=118.5

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcc-c-C
Q 032207            6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFK-G-D   82 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~-~-~   82 (145)
                      +++.+.++.+ ++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.| ++||+|.|++++..... . .
T Consensus        11 ~~~~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~   89 (273)
T PRK07396         11 EYEDILYKSA-DGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDD   89 (273)
T ss_pred             CCcceEEEec-CCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchh
Confidence            4577888886 89999999999999999999999999999999999999999999998 69999999998642111 1 0


Q ss_pred             -ccc-HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           83 -VKD-VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        83 -~~~-~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                       ... ...++++.+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|+.|+
T Consensus        90 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~  152 (273)
T PRK07396         90 GVPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDG  152 (273)
T ss_pred             hhhhhHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCC
Confidence             111 1234567889999999999999999999999999999999999999999999987764

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.8e-37  Score=229.77  Aligned_cols=133  Identities=34%  Similarity=0.531  Sum_probs=113.8

Q ss_pred             CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCc-ccH
Q 032207            8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDV-KDV   86 (145)
Q Consensus         8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~-~~~   86 (145)
                      +.+.++++ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||+|.|++||+|.|++++........ ...
T Consensus         3 ~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~   81 (254)
T PRK08252          3 DEVLVERR-GRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRG   81 (254)
T ss_pred             ceEEEEEE-CCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHH
Confidence            35788887 8999999999999999999999999999999999999999999999999999999998754211111 011


Q ss_pred             HHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           87 ETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        87 ~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      +..++  ...+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus        82 ~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~  136 (254)
T PRK08252         82 FGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAA  136 (254)
T ss_pred             HHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCC
Confidence            11111  24799999999999999999999999999999999999999999999875

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6e-37  Score=230.33  Aligned_cols=134  Identities=26%  Similarity=0.490  Sum_probs=118.3

Q ss_pred             cEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc-C---cc
Q 032207            9 LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG-D---VK   84 (145)
Q Consensus         9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~-~---~~   84 (145)
                      .+.++++ ++|++|+||||++ |+++.+|+++|.++++++++|+++|+|||+|.|++||+|.|++++...... .   ..
T Consensus         3 ~i~~~~~-~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~   80 (257)
T PRK07658          3 FLSVRVE-DHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELA   80 (257)
T ss_pred             eEEEEee-CCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHH
Confidence            6788886 8999999999985 999999999999999999999999999999999999999999987542211 1   11


Q ss_pred             cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           85 DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      ...++++++|..+|||+||++||+|+|||++|+++||+||++++++|++||+++|+.|+.
T Consensus        81 ~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  140 (257)
T PRK07658         81 QLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGF  140 (257)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCC
Confidence            233567788999999999999999999999999999999999999999999999988764

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=9.3e-37  Score=240.06  Aligned_cols=141  Identities=24%  Similarity=0.383  Sum_probs=122.4

Q ss_pred             CCCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC
Q 032207            3 QTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD   82 (145)
Q Consensus         3 ~~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~   82 (145)
                      ++++++.+.++.+ ++|++|+||||+++|++|.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++.......
T Consensus         6 ~~~~~~~v~~~~~-~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~   84 (379)
T PLN02874          6 QNPAEEVVLGEEK-GRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESD   84 (379)
T ss_pred             CCCCCCceEEEEE-CCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccc
Confidence            3567788999987 899999999999999999999999999999999999999999999999999999999875422111


Q ss_pred             --ccc---HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           83 --VKD---VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        83 --~~~---~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                        ...   ....+..+|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|++
T Consensus        85 ~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~  151 (379)
T PLN02874         85 DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDC  151 (379)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCCh
Confidence              111   12234567889999999999999999999999999999999999999999999987754

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.8e-37  Score=228.88  Aligned_cols=133  Identities=26%  Similarity=0.351  Sum_probs=114.4

Q ss_pred             EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc-cCc---cc
Q 032207           10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK-GDV---KD   85 (145)
Q Consensus        10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~-~~~---~~   85 (145)
                      |..+..+++|++|+||||+ .|+++.+|+.+|.++++.++.|+++|+|||+|.|++||+|.|++++..... ...   ..
T Consensus         3 ~~~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~   81 (249)
T PRK07938          3 ITSTTPEPGIAEVTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANR   81 (249)
T ss_pred             eeecccCCCEEEEEECCCC-cccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHH
Confidence            3444445899999999998 599999999999999999999999999999999999999999998653211 111   12


Q ss_pred             HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           86 VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        86 ~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      ...+.+.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++++
T Consensus        82 ~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~g~  139 (249)
T PRK07938         82 GCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGALGA  139 (249)
T ss_pred             HHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCchh
Confidence            2345677899999999999999999999999999999999999999999999998754

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=1.3e-36  Score=228.34  Aligned_cols=135  Identities=16%  Similarity=0.311  Sum_probs=118.1

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC----
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD----   82 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~----   82 (145)
                      ++.+.++++ ++|++|+||||++.|++|.+|+++|.+++++++  +++|+||++|.|++||+|.|++++.......    
T Consensus         3 ~~~i~~~~~-~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~   79 (255)
T PRK07112          3 YQTIRVRQQ-GDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADL   79 (255)
T ss_pred             CceEEEEee-CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchhhh
Confidence            567899986 899999999999999999999999999999998  4699999999999999999999875422111    


Q ss_pred             -cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           83 -VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        83 -~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                       ......+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+.
T Consensus        80 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~  142 (255)
T PRK07112         80 IDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPAC  142 (255)
T ss_pred             hhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcch
Confidence             11223567778999999999999999999999999999999999999999999999987763

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=1.6e-36  Score=228.63  Aligned_cols=133  Identities=30%  Similarity=0.451  Sum_probs=115.9

Q ss_pred             cEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhccc--Cccc
Q 032207            9 LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKG--DVKD   85 (145)
Q Consensus         9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~--~~~~   85 (145)
                      .+.++++ ++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||+|.| ++||+|.|++++......  ....
T Consensus         4 ~i~~~~~-~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~   81 (261)
T PRK03580          4 SLHTTRN-GSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGP   81 (261)
T ss_pred             eEEEEEE-CCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhh
Confidence            4788887 899999999996 6999999999999999999999999999999998 799999999987532211  1111


Q ss_pred             HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           86 VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        86 ~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      .....++++..+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+
T Consensus        82 ~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~  139 (261)
T PRK03580         82 GGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPD  139 (261)
T ss_pred             hhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCC
Confidence            1234567889999999999999999999999999999999999999999999999775

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=9.9e-37  Score=228.54  Aligned_cols=129  Identities=26%  Similarity=0.464  Sum_probs=112.9

Q ss_pred             CCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC-CCcccccCCchhhhhhcccC---cccHHHHHH
Q 032207           16 PMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS-GRAFCSGVDLTSAEDVFKGD---VKDVETDTV   91 (145)
Q Consensus        16 ~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~-g~~F~~G~dl~~~~~~~~~~---~~~~~~~~~   91 (145)
                      +++|++||||||+++|+||.+|+++|.++++++++|+++|+|||+|. |++||+|.|++++.......   .....++++
T Consensus         2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~   81 (251)
T PLN02600          2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTF   81 (251)
T ss_pred             CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999998 58999999999875321111   122234567


Q ss_pred             HHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           92 AQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        92 ~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      .++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus        82 ~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~  134 (251)
T PLN02600         82 SSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGA  134 (251)
T ss_pred             HHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCc
Confidence            78899999999999999999999999999999999999999999999987753

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=1.5e-36  Score=236.17  Aligned_cols=136  Identities=23%  Similarity=0.410  Sum_probs=119.1

Q ss_pred             CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhccc--C--
Q 032207            8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKG--D--   82 (145)
Q Consensus         8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~--~--   82 (145)
                      +.+.++++ ++|++|+||||+++|+++.+|+.+|.++++.++.|+++|+|||+|.| ++||+|+|++++......  .  
T Consensus         3 ~~v~~~~~-~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~   81 (342)
T PRK05617          3 DEVLAEVE-GGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLA   81 (342)
T ss_pred             ceEEEEEE-CCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchh
Confidence            46788886 89999999999999999999999999999999999999999999999 999999999987542211  1  


Q ss_pred             ---cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           83 ---VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        83 ---~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                         ......+++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus        82 ~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~  146 (342)
T PRK05617         82 ADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDV  146 (342)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCc
Confidence               11122356678899999999999999999999999999999999999999999999987753

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=2e-36  Score=237.78  Aligned_cols=140  Identities=25%  Similarity=0.370  Sum_probs=120.4

Q ss_pred             CCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCc
Q 032207            4 TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDV   83 (145)
Q Consensus         4 ~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~   83 (145)
                      +.+...|.++.+ ++|++|+||||+++|+||.+|+.+|.++++.+++|+++++|||+|.|++||+|+|++++........
T Consensus         5 ~~~~~~v~~~~~-~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~   83 (381)
T PLN02988          5 MASQSQVLVEEK-SSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGN   83 (381)
T ss_pred             cccCCceEEEEE-CCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccc
Confidence            455567888886 8999999999999999999999999999999999999999999999999999999998753221111


Q ss_pred             -------ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           84 -------KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        84 -------~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                             ......+..++.++|||+||++||+|+|||++|+++||+|||+++++|++||+++|+.|++
T Consensus        84 ~~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~  151 (381)
T PLN02988         84 WRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDV  151 (381)
T ss_pred             hhHHHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCc
Confidence                   0111234457889999999999999999999999999999999999999999999987764

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=6.2e-37  Score=228.69  Aligned_cols=132  Identities=33%  Similarity=0.535  Sum_probs=119.2

Q ss_pred             EEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc---cCcccHH
Q 032207           11 LVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK---GDVKDVE   87 (145)
Q Consensus        11 ~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~---~~~~~~~   87 (145)
                      .++.+ ++|++|+||+|++.|++|.+++++|.++++.+++|+++|+||++|.++.||+|.|++++.....   ....+.+
T Consensus         1 ~~~~~-~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~   79 (245)
T PF00378_consen    1 KYEIE-DGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRF   79 (245)
T ss_dssp             EEEEE-TTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEE-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchhh
Confidence            36776 9999999999988999999999999999999999999999999999999999999999876621   1233456


Q ss_pred             HHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           88 TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        88 ~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      ++++.++..+|||+||++||+|+|+|++|+++||+||++++++|++||+++|++|+
T Consensus        80 ~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~  135 (245)
T PF00378_consen   80 QELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPG  135 (245)
T ss_dssp             HHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSST
T ss_pred             ccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccc
Confidence            77889999999999999999999999999999999999999999999999998885

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=1.1e-35  Score=225.86  Aligned_cols=137  Identities=21%  Similarity=0.275  Sum_probs=116.9

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC--CcccccCCchhhhhhccc-C
Q 032207            6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG--RAFCSGVDLTSAEDVFKG-D   82 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g--~~F~~G~dl~~~~~~~~~-~   82 (145)
                      ..+.+.+++.+++|++|+||||+ .|++|.+|+++|.++++++++|+++|+|||||.|  ++||+|.|++++...... .
T Consensus         9 ~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~   87 (278)
T PLN03214          9 ATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAA   87 (278)
T ss_pred             CCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchH
Confidence            35688898844889999999985 7999999999999999999999999999999987  799999999986532111 1


Q ss_pred             ----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeec-CC
Q 032207           83 ----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCK-IS  143 (145)
Q Consensus        83 ----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~-~g  143 (145)
                          ......+++.+|.++|||+||+|||+|+|||++|+++|||||++++++|++||+++|++ ++
T Consensus        88 ~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~  153 (278)
T PLN03214         88 RYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPK  153 (278)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCC
Confidence                11112346678999999999999999999999999999999999999999999999984 54

>PLN02921 naphthoate synthase

Probab=100.00  E-value=1.8e-35  Score=228.71  Aligned_cols=137  Identities=33%  Similarity=0.456  Sum_probs=117.6

Q ss_pred             CCCcEEEEEc-CCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhccc--
Q 032207            6 SENLILVTRD-PMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKG--   81 (145)
Q Consensus         6 ~~~~i~~~~~-~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~--   81 (145)
                      +++.|.++++ +++|++|+||||+++|+|+.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|++++......  
T Consensus        63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~  142 (327)
T PLN02921         63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGP  142 (327)
T ss_pred             CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccch
Confidence            4667888873 488999999999999999999999999999999999999999999999 899999999976431101  


Q ss_pred             Cccc--HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecC
Q 032207           82 DVKD--VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKI  142 (145)
Q Consensus        82 ~~~~--~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~  142 (145)
                      ....  ...+++.+|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.+
T Consensus       143 ~~~~~~~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p  205 (327)
T PLN02921        143 DDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFD  205 (327)
T ss_pred             hHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCC
Confidence            0011  113456788999999999999999999999999999999999999999999998754

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.7e-35  Score=233.55  Aligned_cols=139  Identities=23%  Similarity=0.361  Sum_probs=120.7

Q ss_pred             CCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC--
Q 032207            5 KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD--   82 (145)
Q Consensus         5 ~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~--   82 (145)
                      ..++.+.++.. +++++|+||||+++|+|+.+|+.+|.++++.+++|+++++|||+|.|+.||+|+|++++.+.....  
T Consensus        39 ~~~~~v~~e~~-~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~  117 (407)
T PLN02851         39 DLQDQVLVEGR-AKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNV  117 (407)
T ss_pred             CCCCCeEEEEE-CCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccch
Confidence            34567888886 899999999999999999999999999999999999999999999999999999999886532211  


Q ss_pred             -----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           83 -----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        83 -----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                           +....+++.+.|.++|||+||++||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus       118 ~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~Pdv  184 (407)
T PLN02851        118 EECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDA  184 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCc
Confidence                 11123445567789999999999999999999999999999999999999999999987653

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=7.7e-35  Score=223.42  Aligned_cols=135  Identities=24%  Similarity=0.355  Sum_probs=113.6

Q ss_pred             CCcEEEEE--cCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-------CcccccCCchhhhh
Q 032207            7 ENLILVTR--DPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-------RAFCSGVDLTSAED   77 (145)
Q Consensus         7 ~~~i~~~~--~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-------~~F~~G~dl~~~~~   77 (145)
                      .+.+++++  + ++|++||||||+++|+++.+|+.+|.++++++++|+++|+|||+|.|       ++||+|+|++++..
T Consensus        22 ~~~i~~~~~~~-~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~  100 (302)
T PRK08321         22 FTDITYHRAVD-QGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGR  100 (302)
T ss_pred             ceeEEEEEecC-CCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhcc
Confidence            34688887  6 88999999999999999999999999999999999999999999988       59999999987532


Q ss_pred             hc----cc------Cccc--H--HHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEe-CCcEEeccceeeeecC
Q 032207           78 VF----KG------DVKD--V--ETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAA-KGAKFIDTHARLVCKI  142 (145)
Q Consensus        78 ~~----~~------~~~~--~--~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~-~~a~f~~pe~~~G~~~  142 (145)
                      ..    ..      ....  .  ..++.+.+..+|||+||+|||+|+|||++|+++||+|||+ ++++|++||+++|+.+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p  180 (302)
T PRK08321        101 DGYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFD  180 (302)
T ss_pred             ccccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCC
Confidence            10    00      0000  0  1234567889999999999999999999999999999999 6899999999998654

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.6e-35  Score=215.16  Aligned_cols=130  Identities=21%  Similarity=0.333  Sum_probs=112.8

Q ss_pred             CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc--Cccc
Q 032207            8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG--DVKD   85 (145)
Q Consensus         8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~--~~~~   85 (145)
                      +.+.++.+ ++|++|+||||+ .|+++.+++++|.++++.++  +++|+||++|.|++||+|.|++++......  ....
T Consensus         3 ~~i~~~~~-~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~   78 (229)
T PRK06213          3 ELVSYTLE-DGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLT   78 (229)
T ss_pred             ceEEEEec-CCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHH
Confidence            36888886 899999999984 79999999999999999998  557999999999999999999987542111  1122


Q ss_pred             HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCC-cEEeccceeeeec
Q 032207           86 VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG-AKFIDTHARLVCK  141 (145)
Q Consensus        86 ~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~-a~f~~pe~~~G~~  141 (145)
                      ...++++++..+|||+||++||+|+|+|++|+++||+|||+++ ++|++||+++|++
T Consensus        79 ~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~  135 (229)
T PRK06213         79 AGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMT  135 (229)
T ss_pred             HHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCc
Confidence            3456778899999999999999999999999999999999999 9999999999975

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=7.9e-35  Score=216.85  Aligned_cols=132  Identities=18%  Similarity=0.258  Sum_probs=111.4

Q ss_pred             EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCee-EEEEEcCCCcccccCCchhhhhhccc-----Cc
Q 032207           10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVL-VIILSGSGRAFCSGVDLTSAEDVFKG-----DV   83 (145)
Q Consensus        10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~-~vvl~g~g~~F~~G~dl~~~~~~~~~-----~~   83 (145)
                      +.++++ ++|++|+||||++ |+|+.+|+++|.+++++++.|++++ +||++|.|++||+|.|++++......     ..
T Consensus         2 ~~~~~~-~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~   79 (239)
T PLN02267          2 CTLEKR-GNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLM   79 (239)
T ss_pred             ceeEec-CCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHH
Confidence            466776 8999999999984 9999999999999999999998875 77789999999999999986432111     01


Q ss_pred             ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEe-CCcEEeccceeeeec-CC
Q 032207           84 KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAA-KGAKFIDTHARLVCK-IS  143 (145)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~-~~a~f~~pe~~~G~~-~g  143 (145)
                      ...+++++.++.++|||+||+|||+|+|||++|+++||+|||+ ++++|++||+++|++ |+
T Consensus        80 ~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~  141 (239)
T PLN02267         80 VAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPD  141 (239)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCCh
Confidence            1234556778999999999999999999999999999999998 568999999999985 53

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.1e-34  Score=219.21  Aligned_cols=132  Identities=17%  Similarity=0.243  Sum_probs=108.6

Q ss_pred             EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhcc-----CCCeeEEEEEcC-CCcccccCCchhhhhhcccCc
Q 032207           10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDK-----DESVLVIILSGS-GRAFCSGVDLTSAEDVFKGDV   83 (145)
Q Consensus        10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~-----~~~v~~vvl~g~-g~~F~~G~dl~~~~~~~~~~~   83 (145)
                      |.++.+ ++|++|+|| |+++|+|+.+|+++|.++++++++     |+++|+|||+|. |++||+|.|++++........
T Consensus        19 i~~e~~-~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~   96 (287)
T PRK08788         19 VYYEEE-RNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGD   96 (287)
T ss_pred             EEEEcc-CCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccc
Confidence            444443 789999996 888999999999999999999998     899999999999 799999999998653211111


Q ss_pred             cc-------HHHHHHHHHh---cCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           84 KD-------VETDTVAQME---RCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        84 ~~-------~~~~~~~~l~---~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      ..       ...+.+.++.   .+|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~  166 (287)
T PRK08788         97 RDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPG  166 (287)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCC
Confidence            11       1122233333   799999999999999999999999999999999999999999998775

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=1e-34  Score=224.33  Aligned_cols=126  Identities=25%  Similarity=0.477  Sum_probs=110.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcccC------cccHHHHHH
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKGD------VKDVETDTV   91 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~~------~~~~~~~~~   91 (145)
                      +++|+||||+++|+++.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.......      ..+.+++++
T Consensus        38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~  117 (360)
T TIGR03200        38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV  117 (360)
T ss_pred             EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence            456999999999999999999999999999999999999999999 6999999999875432111      112234567


Q ss_pred             HHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           92 AQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        92 ~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      .++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus       118 ~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~  170 (360)
T TIGR03200       118 SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIG  170 (360)
T ss_pred             HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCc
Confidence            78999999999999999999999999999999999999999999999988763

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=2.4e-34  Score=241.45  Aligned_cols=136  Identities=25%  Similarity=0.362  Sum_probs=118.9

Q ss_pred             CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc------
Q 032207            8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG------   81 (145)
Q Consensus         8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~------   81 (145)
                      ..+.++..+++|++|+||||+++|++|.+|+++|.++++.+++|+++|+|||+|.|++||+|+|++++......      
T Consensus         6 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~   85 (715)
T PRK11730          6 KTLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELS   85 (715)
T ss_pred             ceEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHH
Confidence            36778754489999999999999999999999999999999999999999999999999999999987542111      


Q ss_pred             CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           82 DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      ......++++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus        86 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~  147 (715)
T PRK11730         86 QWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPG  147 (715)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC
Confidence            11123345677899999999999999999999999999999999999999999999998775

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=8.6e-34  Score=237.87  Aligned_cols=136  Identities=27%  Similarity=0.325  Sum_probs=120.5

Q ss_pred             cEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC------
Q 032207            9 LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD------   82 (145)
Q Consensus         9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~------   82 (145)
                      .+.++..+++|++|+||||++.|+|+.+|+.+|.+++++++.|+++|+|||+|.|++||+|+|++++.......      
T Consensus         7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~   86 (714)
T TIGR02437         7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQ   86 (714)
T ss_pred             eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHH
Confidence            67888655899999999999999999999999999999999999999999999999999999999875421111      


Q ss_pred             cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           83 VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      ..+..++++.+|..+|||+||++||+|+|||++|+++||+|||+++++|++||+++|+.||.
T Consensus        87 ~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~  148 (714)
T TIGR02437        87 WLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGF  148 (714)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCc
Confidence            11234567889999999999999999999999999999999999999999999999998874

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=100.00  E-value=1.3e-33  Score=203.80  Aligned_cols=133  Identities=35%  Similarity=0.594  Sum_probs=119.7

Q ss_pred             EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC-----cc
Q 032207           10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD-----VK   84 (145)
Q Consensus        10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~-----~~   84 (145)
                      +.++++ ++|++|+||+|++.|++|.+++++|.++++.++.|+++++|||+|.++.||+|.|++++.......     ..
T Consensus         1 i~~~~~-~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~   79 (195)
T cd06558           1 VLVERD-GGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFI   79 (195)
T ss_pred             CEEEEE-CCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHH
Confidence            356776 899999999999999999999999999999999999999999999999999999999987654432     23


Q ss_pred             cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           85 DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      +..++++.++..+|||+|+++||+|.|+|++++++||+||++++++|++||+++|++|+
T Consensus        80 ~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~  138 (195)
T cd06558          80 RELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPG  138 (195)
T ss_pred             HHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCC
Confidence            44567788899999999999999999999999999999999999999999999988754

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=2.5e-32  Score=222.27  Aligned_cols=138  Identities=17%  Similarity=0.243  Sum_probs=115.1

Q ss_pred             CCCCcEEEEEcCCcEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHhhc-cCCCeeEEEEEcC-CCcccccCCc
Q 032207            5 KSENLILVTRDPMGIAYVTINRPK----------SLNSLTRSMMADMAQAFKSLD-KDESVLVIILSGS-GRAFCSGVDL   72 (145)
Q Consensus         5 ~~~~~i~~~~~~~~v~~i~l~~~~----------~~N~l~~~~~~~l~~~l~~~~-~~~~v~~vvl~g~-g~~F~~G~dl   72 (145)
                      ++++++.++++ ++|++|+||||+          |+|+++.+|+++|.+++++++ .++++|+|||||. |++||+|.|+
T Consensus         8 ~~~~~v~~~~~-g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL   86 (546)
T TIGR03222         8 SQYRHWKLTFD-GPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANI   86 (546)
T ss_pred             CCCceEEEEee-CCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCH
Confidence            34578999987 899999999975          899999999999999999999 7899999999987 5999999999


Q ss_pred             hhhhhhcccC---cccHH----HHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCC--cEEecccee-eeecC
Q 032207           73 TSAEDVFKGD---VKDVE----TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG--AKFIDTHAR-LVCKI  142 (145)
Q Consensus        73 ~~~~~~~~~~---~~~~~----~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~--a~f~~pe~~-~G~~~  142 (145)
                      +++.......   .....    ..+.+.+.++|||+||+|||+|+|||++|+++||+||++++  ++|++||++ +|+.|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P  166 (546)
T TIGR03222        87 FMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLP  166 (546)
T ss_pred             HHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCC
Confidence            9874321110   00111    22344667899999999999999999999999999999986  799999997 88877


Q ss_pred             C
Q 032207          143 S  143 (145)
Q Consensus       143 g  143 (145)
                      +
T Consensus       167 ~  167 (546)
T TIGR03222       167 G  167 (546)
T ss_pred             c
Confidence            5

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=2.1e-32  Score=230.01  Aligned_cols=138  Identities=22%  Similarity=0.372  Sum_probs=119.0

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHhhccCCCeeEE-EEEcCCCcccccCCchhhhhhcccC-
Q 032207            6 SENLILVTRDPMGIAYVTINRPK-SLNSLTRSMMADMAQAFKSLDKDESVLVI-ILSGSGRAFCSGVDLTSAEDVFKGD-   82 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~-~~N~l~~~~~~~l~~~l~~~~~~~~v~~v-vl~g~g~~F~~G~dl~~~~~~~~~~-   82 (145)
                      .++.+.++.+ ++|++|+||||+ +.|+|+.+++.+|.+++++++.|+++|++ |++|.|++||+|+|++++....... 
T Consensus        11 ~~~~~~~~~~-~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~   89 (737)
T TIGR02441        11 ARTHRHYEVK-GDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQE   89 (737)
T ss_pred             CCCeEEEEEE-CCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHH
Confidence            4567888886 899999999998 58999999999999999999999999965 5699999999999999875321111 


Q ss_pred             ---cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCC--cEEeccceeeeecCCC
Q 032207           83 ---VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG--AKFIDTHARLVCKISC  144 (145)
Q Consensus        83 ---~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~--a~f~~pe~~~G~~~g~  144 (145)
                         .....++++.++.++|||+||+|||+|+|||++|+++||||||+++  ++|++||+++|+.||.
T Consensus        90 ~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~  156 (737)
T TIGR02441        90 VTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGA  156 (737)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCc
Confidence               1123456788999999999999999999999999999999999987  5899999999988764

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=3.1e-33  Score=201.89  Aligned_cols=138  Identities=33%  Similarity=0.541  Sum_probs=116.6

Q ss_pred             CCCCcEEEE--EcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc--
Q 032207            5 KSENLILVT--RDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK--   80 (145)
Q Consensus         5 ~~~~~i~~~--~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~--   80 (145)
                      ..++.+.+.  ..+..|.++.||||.|+|+++..|+.|+.++++.+..||++|+|||+|.|++||+|.|+..+.....  
T Consensus        16 ~s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~   95 (292)
T KOG1681|consen   16 HSYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQ   95 (292)
T ss_pred             cccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccc
Confidence            345655555  3335699999999999999999999999999999999999999999999999999999876543211  


Q ss_pred             --c-Ccc----------cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecC
Q 032207           81 --G-DVK----------DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKI  142 (145)
Q Consensus        81 --~-~~~----------~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~  142 (145)
                        . +..          ..+++.+..|++||||+|++++|.|+|+|+.|..+||+|+|++++.|+.-|+.+|+.-
T Consensus        96 ~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaA  170 (292)
T KOG1681|consen   96 PEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAA  170 (292)
T ss_pred             cccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhh
Confidence              1 111          1235567789999999999999999999999999999999999999999999998753

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=2.3e-32  Score=229.04  Aligned_cols=135  Identities=24%  Similarity=0.371  Sum_probs=114.8

Q ss_pred             EEEEEcCCcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHhhccCCCeeEEEE-EcCCCcccccCCchhhhhhcccC----c
Q 032207           10 ILVTRDPMGIAYVTINRP-KSLNSLTRSMMADMAQAFKSLDKDESVLVIIL-SGSGRAFCSGVDLTSAEDVFKGD----V   83 (145)
Q Consensus        10 i~~~~~~~~v~~i~l~~~-~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl-~g~g~~F~~G~dl~~~~~~~~~~----~   83 (145)
                      +.++..+++|++|+|||| ++.|+||.+|+++|.+++++++.|+++|+||| +|.|++||+|+|++++.......    .
T Consensus         2 ~~~~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~   81 (699)
T TIGR02440         2 FTLTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKAL   81 (699)
T ss_pred             eEEEEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHH
Confidence            344555589999999999 68999999999999999999999999999986 57889999999999875321111    1


Q ss_pred             ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCC--cEEeccceeeeecCCC
Q 032207           84 KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG--AKFIDTHARLVCKISC  144 (145)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~--a~f~~pe~~~G~~~g~  144 (145)
                      ....++++.++.++|||+||+|||+|+|||++|+++||+|||+++  ++|++||+++|+.|+.
T Consensus        82 ~~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~  144 (699)
T TIGR02440        82 AQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGS  144 (699)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCc
Confidence            123356778899999999999999999999999999999999986  7999999999987763

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.98  E-value=6.6e-32  Score=226.65  Aligned_cols=135  Identities=20%  Similarity=0.311  Sum_probs=116.1

Q ss_pred             cEEEEEcCCcEEEEEEcCC-CCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcccC----
Q 032207            9 LILVTRDPMGIAYVTINRP-KSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKGD----   82 (145)
Q Consensus         9 ~i~~~~~~~~v~~i~l~~~-~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~~----   82 (145)
                      .+.++.++++|++|+|||| ++.|++|.+|+++|.+++++++.|+++|+|||+|.+ ++||+|+|++++.......    
T Consensus         6 ~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~   85 (708)
T PRK11154          6 AFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEA   85 (708)
T ss_pred             eEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHH
Confidence            4667775589999999999 589999999999999999999999999999999875 8999999999875321111    


Q ss_pred             cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCC--cEEeccceeeeecCC
Q 032207           83 VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG--AKFIDTHARLVCKIS  143 (145)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~--a~f~~pe~~~G~~~g  143 (145)
                      .....++++.+|.++|||+||+|||+|+|||++|+++||+|||+++  ++|++||+++|+.|+
T Consensus        86 ~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~  148 (708)
T PRK11154         86 LARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPG  148 (708)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCC
Confidence            1123355778899999999999999999999999999999999987  499999999998765

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=99.98  E-value=4e-32  Score=221.07  Aligned_cols=135  Identities=15%  Similarity=0.122  Sum_probs=113.0

Q ss_pred             CcEEE--EEcCCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHhhc-cCCCeeEEEEEcCCCc-ccccC
Q 032207            8 NLILV--TRDPMGIAYVTINRPKSL-------------NSLTRSMMADMAQAFKSLD-KDESVLVIILSGSGRA-FCSGV   70 (145)
Q Consensus         8 ~~i~~--~~~~~~v~~i~l~~~~~~-------------N~l~~~~~~~l~~~l~~~~-~~~~v~~vvl~g~g~~-F~~G~   70 (145)
                      .+|.+  +++ ++|++||||||+++             |+++.+|+++|.+++++++ +|+++|+|||||.|+. ||+|+
T Consensus       256 ~~~~v~~~~~-~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~  334 (546)
T TIGR03222       256 PTVDVAIDRA-ARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAA  334 (546)
T ss_pred             eeEEEEEecc-CCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCc
Confidence            44444  444 88999999999999             9999999999999999998 4599999999999987 99999


Q ss_pred             CchhhhhhcccC---cccHHHHHHHHHhcCCccEEEee-chhccHHh-HHHHHhcCEEEE-------eCCcEEeccceee
Q 032207           71 DLTSAEDVFKGD---VKDVETDTVAQMERCRKPIIGAI-SGFAVTAG-FEIALACDVLVA-------AKGAKFIDTHARL  138 (145)
Q Consensus        71 dl~~~~~~~~~~---~~~~~~~~~~~l~~~~kp~Ia~v-~G~a~GgG-~~l~l~~D~~ia-------~~~a~f~~pe~~~  138 (145)
                      |++.........   .....++.+.+|..+|||+||+| ||+|+||| ++|+++||+||+       +++++|++||+++
T Consensus       335 Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~l  414 (546)
T TIGR03222       335 DALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNF  414 (546)
T ss_pred             CccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCcccc
Confidence            998422111000   11223456788999999999999 89999999 999999999999       8999999999999


Q ss_pred             eecCC
Q 032207          139 VCKIS  143 (145)
Q Consensus       139 G~~~g  143 (145)
                      |+.|+
T Consensus       415 Gl~p~  419 (546)
T TIGR03222       415 GLYPM  419 (546)
T ss_pred             ccCCC
Confidence            98775

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=99.97  E-value=2.1e-31  Score=217.24  Aligned_cols=139  Identities=18%  Similarity=0.247  Sum_probs=115.7

Q ss_pred             CCCCCcEEEEEcCCcEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHhhc-cCCCeeEEEEEcCC-CcccccCC
Q 032207            4 TKSENLILVTRDPMGIAYVTINRP-------K---SLNSLTRSMMADMAQAFKSLD-KDESVLVIILSGSG-RAFCSGVD   71 (145)
Q Consensus         4 ~~~~~~i~~~~~~~~v~~i~l~~~-------~---~~N~l~~~~~~~l~~~l~~~~-~~~~v~~vvl~g~g-~~F~~G~d   71 (145)
                      ..+++.+.++++ ++|++|+||||       +   +.|+++.+|+.+|.+++++++ +++++|+|||+|.+ ++||+|.|
T Consensus        11 ~~~~~~~~~e~~-~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~D   89 (550)
T PRK08184         11 PSQYRHWKLSFD-GPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGAN   89 (550)
T ss_pred             CCCCceEEEEee-CCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccC
Confidence            455788999987 89999999964       3   899999999999999999999 78999999999975 99999999


Q ss_pred             chhhhhhcccCcc---cHHH----HHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCC--cEEecccee-eeec
Q 032207           72 LTSAEDVFKGDVK---DVET----DTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG--AKFIDTHAR-LVCK  141 (145)
Q Consensus        72 l~~~~~~~~~~~~---~~~~----~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~--a~f~~pe~~-~G~~  141 (145)
                      ++++.........   ...+    .+...+.++|||+||+|||+|+|||++|+++|||||++++  ++|++||++ +|+.
T Consensus        90 L~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~  169 (550)
T PRK08184         90 IFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL  169 (550)
T ss_pred             HHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence            9986532111100   1111    1344677899999999999999999999999999999987  899999997 8887


Q ss_pred             CC
Q 032207          142 IS  143 (145)
Q Consensus       142 ~g  143 (145)
                      |+
T Consensus       170 P~  171 (550)
T PRK08184        170 PG  171 (550)
T ss_pred             CC
Confidence            75

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=99.97  E-value=7.3e-32  Score=219.98  Aligned_cols=137  Identities=15%  Similarity=0.131  Sum_probs=112.9

Q ss_pred             CcEEEEEc-CCcEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHhhcc-CCCeeEEEEEcCC-CcccccCC
Q 032207            8 NLILVTRD-PMGIAYVTINRPKSL-------------NSLTRSMMADMAQAFKSLDK-DESVLVIILSGSG-RAFCSGVD   71 (145)
Q Consensus         8 ~~i~~~~~-~~~v~~i~l~~~~~~-------------N~l~~~~~~~l~~~l~~~~~-~~~v~~vvl~g~g-~~F~~G~d   71 (145)
                      +++.++.+ +++|++||||||+++             |+|+.+|+++|.+++++++. |+++|+|||||.| +.||+|+|
T Consensus       260 ~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~D  339 (550)
T PRK08184        260 RHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAAD  339 (550)
T ss_pred             EEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCC
Confidence            34454432 378999999999988             68999999999999999986 7999999999999 59999999


Q ss_pred             chhhhhhcc---cCcccHHHHHHHHHhcCCccEEEeec-hhccHHh-HHHHHhcCEEEEe-------CCcEEeccceeee
Q 032207           72 LTSAEDVFK---GDVKDVETDTVAQMERCRKPIIGAIS-GFAVTAG-FEIALACDVLVAA-------KGAKFIDTHARLV  139 (145)
Q Consensus        72 l~~~~~~~~---~~~~~~~~~~~~~l~~~~kp~Ia~v~-G~a~GgG-~~l~l~~D~~ia~-------~~a~f~~pe~~~G  139 (145)
                      ++.......   ......+++.+.+|..+|||+||+|| |+|+||| ++|+++||+|||+       ++++|++||+++|
T Consensus       340 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~G  419 (550)
T PRK08184        340 ATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFG  419 (550)
T ss_pred             hhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECcccccc
Confidence            873221100   01112334567789999999999997 9999999 9999999999999       9999999999999


Q ss_pred             ecCCC
Q 032207          140 CKISC  144 (145)
Q Consensus       140 ~~~g~  144 (145)
                      +.|+.
T Consensus       420 l~p~~  424 (550)
T PRK08184        420 LYPMV  424 (550)
T ss_pred             CCCCC
Confidence            88763

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=99.97  E-value=1.4e-31  Score=192.07  Aligned_cols=129  Identities=32%  Similarity=0.482  Sum_probs=116.4

Q ss_pred             CCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhccc---CcccHHHHHH
Q 032207           16 PMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKG---DVKDVETDTV   91 (145)
Q Consensus        16 ~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~---~~~~~~~~~~   91 (145)
                      +.+|.+|-||||.+.|+|+..|+++|.++++++..|+.+|+|+|++.- +.||+|+||++.......   .+...++.++
T Consensus        38 ~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~  117 (291)
T KOG1679|consen   38 DEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLF  117 (291)
T ss_pred             CCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHH
Confidence            367999999999999999999999999999999999999999999974 999999999996654443   3455667788


Q ss_pred             HHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           92 AQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        92 ~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      ..+.++|.|+||+++|.++|||+||+|+||+|+|+++++|+++|+++++-||.
T Consensus       118 ~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGa  170 (291)
T KOG1679|consen  118 NDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGA  170 (291)
T ss_pred             HHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCC
Confidence            89999999999999999999999999999999999999999999999766653

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=99.96  E-value=1.4e-28  Score=180.55  Aligned_cols=139  Identities=29%  Similarity=0.483  Sum_probs=122.7

Q ss_pred             CCCcEEEEEcCCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcc
Q 032207            6 SENLILVTRDPMGIAYVTIN-RPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVK   84 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~-~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~   84 (145)
                      .++.+.+++. |++.+|.++ ||+|.|+++.+++.++..+++.+.+|+++..++++|.|++||+|.|+..+......+..
T Consensus         5 ~~~~~vv~~~-~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~   83 (266)
T KOG0016|consen    5 RYREIVVTRE-NGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDAN   83 (266)
T ss_pred             cccceEEEec-CCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCccc
Confidence            3556677776 999999999 99999999999999999999999999999999999999999999999987765544322


Q ss_pred             c---HH-------HHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceee-eecCCCC
Q 032207           85 D---VE-------TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARL-VCKISCS  145 (145)
Q Consensus        85 ~---~~-------~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~-G~~~g~s  145 (145)
                      +   ..       ..+...+..+|||+||.|||+|+|.|..+.-.||+++|+|++.|..|++++ -+|+|||
T Consensus        84 ~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~S  155 (266)
T KOG0016|consen   84 EESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCS  155 (266)
T ss_pred             ccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcce
Confidence            1   11       125678889999999999999999999999999999999999999999999 7899998

>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=99.93  E-value=8.3e-26  Score=172.42  Aligned_cols=137  Identities=25%  Similarity=0.367  Sum_probs=119.4

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcccCc-
Q 032207            6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKGDV-   83 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~~~-   83 (145)
                      ....|.++.. +....|+||||+.+||+|.+|+..+.-.|..++.++.+++||+.|.+ +.||+|+|+........... 
T Consensus        36 ~~~~VL~e~~-~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~  114 (401)
T KOG1684|consen   36 SKDQVLVEGK-GCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKET  114 (401)
T ss_pred             cCCceEEecC-CceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCc
Confidence            3467888887 89999999999999999999999999999999999999999999985 99999999986554333221 


Q ss_pred             ------ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           84 ------KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        84 ------~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                            ......+...+..+.||.||.++|..+|||+.|+..--||||+|++.|.+||+.+|+-|.
T Consensus       115 ~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPD  180 (401)
T KOG1684|consen  115 PEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPD  180 (401)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccC
Confidence                  122344556788999999999999999999999999999999999999999999988775

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=99.93  E-value=2.6e-26  Score=165.07  Aligned_cols=137  Identities=31%  Similarity=0.462  Sum_probs=115.9

Q ss_pred             CCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC--C-CcccccCCchhhhhh---
Q 032207            5 KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS--G-RAFCSGVDLTSAEDV---   78 (145)
Q Consensus         5 ~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~--g-~~F~~G~dl~~~~~~---   78 (145)
                      ..++.|.+++..++|+.|+||||+++|+|.+..+.||.+++..+..|+++-+|+|||.  | +.||+|+|-+-....   
T Consensus        15 ~~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY   94 (282)
T COG0447          15 EGYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGY   94 (282)
T ss_pred             CCcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCc
Confidence            4578899998768999999999999999999999999999999999999999999984  4 899999997653331   


Q ss_pred             cccCcccHH--HHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeec
Q 032207           79 FKGDVKDVE--TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCK  141 (145)
Q Consensus        79 ~~~~~~~~~--~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~  141 (145)
                      ........+  .++-+.|+.+|||+||.|+|+++|||-.|-+.||+.||+++++|++.-.++|.-
T Consensus        95 ~~d~~~~rLnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSF  159 (282)
T COG0447          95 VDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSF  159 (282)
T ss_pred             cCCccCcccchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccc
Confidence            111111222  345567889999999999999999999999999999999999999988888543

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=99.93  E-value=1.2e-25  Score=160.51  Aligned_cols=130  Identities=27%  Similarity=0.473  Sum_probs=116.1

Q ss_pred             EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCc----cc
Q 032207           10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDV----KD   85 (145)
Q Consensus        10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~----~~   85 (145)
                      .+++.+ ++|-.|+|++|+|+|.++.+|+.+|.+.+....++.++|+|||+..|+.||+|.||+++......+.    .+
T Consensus        34 g~~~~~-~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFq  112 (287)
T KOG1682|consen   34 GLVKEH-NGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQ  112 (287)
T ss_pred             cccccc-cceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHH
Confidence            444554 8999999999999999999999999999999999999999999999999999999999876554332    23


Q ss_pred             HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeee
Q 032207           86 VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVC  140 (145)
Q Consensus        86 ~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~  140 (145)
                      ...+.+..|+++|.|+|+-|||.|..+|+.|..+||+++|+++++|..|-.++|+
T Consensus       113 tc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGl  167 (287)
T KOG1682|consen  113 TCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGL  167 (287)
T ss_pred             HHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceee
Confidence            3356778899999999999999999999999999999999999999999999975

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.70  E-value=1e-16  Score=114.52  Aligned_cols=89  Identities=19%  Similarity=0.206  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHhHH
Q 032207           36 SMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFE  115 (145)
Q Consensus        36 ~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~  115 (145)
                      -.+++|.++++++++|+++|+|||++    +|.|.|+...         ..+.+.+.++.+++||+||+++|.|.|+|+.
T Consensus        22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~---------~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~   88 (177)
T cd07014          22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTAS---------EVIRAELAAARAAGKPVVASGGGNAASGGYW   88 (177)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHH---------HHHHHHHHHHHhCCCCEEEEECCchhHHHHH
Confidence            35789999999999999999999997    6888887652         2345567788889999999999999999999


Q ss_pred             HHHhcCEEEEeCCcEEecccee
Q 032207          116 IALACDVLVAAKGAKFIDTHAR  137 (145)
Q Consensus       116 l~l~~D~~ia~~~a~f~~pe~~  137 (145)
                      |+++||+++++++++|+.+.+.
T Consensus        89 la~a~D~i~a~~~a~~~~~G~~  110 (177)
T cd07014          89 ISTPANYIVANPSTLVGSIGIF  110 (177)
T ss_pred             HHHhCCEEEECCCCeEEEechH
Confidence            9999999999999999988654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.67  E-value=5.1e-16  Score=113.77  Aligned_cols=102  Identities=21%  Similarity=0.218  Sum_probs=84.0

Q ss_pred             cEEEEEEcCC--CCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHh
Q 032207           18 GIAYVTINRP--KSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQME   95 (145)
Q Consensus        18 ~v~~i~l~~~--~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~   95 (145)
                      +|++|.++.+  +..+.-+.-.+++|.++|+++.+|+++++|||+    .||.|+|+..+.         .+.+.++.+.
T Consensus         1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~---------~~~~~l~~~~   67 (211)
T cd07019           1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASE---------VIRAELAAAR   67 (211)
T ss_pred             CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHH---------HHHHHHHHHH
Confidence            3566666543  123333455689999999999999999999998    799999997743         3345567788


Q ss_pred             cCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEe
Q 032207           96 RCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFI  132 (145)
Q Consensus        96 ~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~  132 (145)
                      .++||+|++++|.|.|+|+.|+++||++++++++.|+
T Consensus        68 ~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~g  104 (211)
T cd07019          68 AAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTG  104 (211)
T ss_pred             hCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEE
Confidence            8999999999999999999999999999999999987

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.56  E-value=5.7e-14  Score=103.15  Aligned_cols=96  Identities=23%  Similarity=0.241  Sum_probs=74.7

Q ss_pred             CCCCCCC-CCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEe
Q 032207           26 RPKSLNS-LTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGA  104 (145)
Q Consensus        26 ~~~~~N~-l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~  104 (145)
                      ++...|+ ++..++.+|.++|+++++|+++++|||+.    +|.|.++...         +.+.+.++.+.. +||+||+
T Consensus        14 ~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~---------~~l~~~l~~~~~-~KpViA~   79 (214)
T cd07022          14 RGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGV---------FELADAIRAARA-GKPIVAF   79 (214)
T ss_pred             CCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHH---------HHHHHHHHHHhc-CCCEEEE
Confidence            3333454 45789999999999999999999999975    4556655432         223334444444 6999999


Q ss_pred             echhccHHhHHHHHhcCEEEEeCCcEEeccc
Q 032207          105 ISGFAVTAGFEIALACDVLVAAKGAKFIDTH  135 (145)
Q Consensus       105 v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe  135 (145)
                      ++|.|.|+|+.++++||++++++++.|+..-
T Consensus        80 v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG  110 (214)
T cd07022          80 VNGLAASAAYWIASAADRIVVTPTAGVGSIG  110 (214)
T ss_pred             ECCchhhHHHHHHhcCCEEEEcCCCeEEeee
Confidence            9999999999999999999999999987543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.55  E-value=4.1e-14  Score=103.45  Aligned_cols=101  Identities=19%  Similarity=0.279  Sum_probs=82.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCC
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCR   98 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (145)
                      |++|.++.+-...  ...++.+|.++++.+++|+++++|+|++    +|.|+|+...         ..+.+.++.+..++
T Consensus         2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~---------~~i~~~i~~~~~~~   66 (208)
T cd07023           2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVAS---------EEIYREIRRLRKAK   66 (208)
T ss_pred             EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHH---------HHHHHHHHHHHhcC
Confidence            5666665432101  3689999999999999999999999998    4778888652         23455677888889


Q ss_pred             ccEEEeechhccHHhHHHHHhcCEEEEeCCcEEecc
Q 032207           99 KPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDT  134 (145)
Q Consensus        99 kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~p  134 (145)
                      ||+||+++|.|.|+|+.++++||++++++++.|+..
T Consensus        67 kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~i  102 (208)
T cd07023          67 KPVVASMGDVAASGGYYIAAAADKIVANPTTITGSI  102 (208)
T ss_pred             CcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeC
Confidence            999999999999999999999999999999998754

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.51  E-value=1.2e-13  Score=99.42  Aligned_cols=98  Identities=19%  Similarity=0.250  Sum_probs=76.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEE-cCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcC
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS-GSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERC   97 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~-g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~   97 (145)
                      |++|+++.     .++......+.+.++.+++++ ++.|+|. ..+     |+++..            ..+++..|..+
T Consensus         1 ~~vv~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InSp-----GG~v~~------------~~~i~~~l~~~   57 (187)
T cd07020           1 VYVLEING-----AITPATADYLERAIDQAEEGG-ADALIIELDTP-----GGLLDS------------TREIVQAILAS   57 (187)
T ss_pred             CEEEEEee-----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEECC-----CCCHHH------------HHHHHHHHHhC
Confidence            35666653     356777889999999998665 7777776 322     233322            23556678889


Q ss_pred             CccEEEeec---hhccHHhHHHHHhcCEEEEeCCcEEeccceeee
Q 032207           98 RKPIIGAIS---GFAVTAGFEIALACDVLVAAKGAKFIDTHARLV  139 (145)
Q Consensus        98 ~kp~Ia~v~---G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G  139 (145)
                      |||+|++++   |+|.|+|+.++++||+++++++++|+.+++..+
T Consensus        58 ~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~  102 (187)
T cd07020          58 PVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAI  102 (187)
T ss_pred             CCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEecccccc
Confidence            999999999   999999999999999999999999999998854

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.42  E-value=1.3e-12  Score=91.64  Aligned_cols=92  Identities=24%  Similarity=0.318  Sum_probs=77.7

Q ss_pred             CCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHH
Q 032207           33 LTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTA  112 (145)
Q Consensus        33 l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~Gg  112 (145)
                      ++..++++|.+.|+.+++|+.++.|+|+.    .|.|.++..            ...+...+..++||+|+.++|.|.++
T Consensus         8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~------------~~~i~~~l~~~~kpvva~~~g~~~s~   71 (161)
T cd00394           8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDA------------GMNIVDALQASRKPVIAYVGGQAASA   71 (161)
T ss_pred             EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHH------------HHHHHHHHHHhCCCEEEEECChhHHH
Confidence            55688999999999999999999999976    466666543            23456677788899999999999999


Q ss_pred             hHHHHHhcCEEEEeCCcEEeccceeeee
Q 032207          113 GFEIALACDVLVAAKGAKFIDTHARLVC  140 (145)
Q Consensus       113 G~~l~l~~D~~ia~~~a~f~~pe~~~G~  140 (145)
                      |+.|+++||.|++.+++.|.+..+..+.
T Consensus        72 g~~la~~~d~~~~~~~a~~~~~g~~~~~   99 (161)
T cd00394          72 GYYIATAANKIVMAPGTRVGSHGPIGGY   99 (161)
T ss_pred             HHHHHhCCCEEEECCCCEEEEeeeEEec
Confidence            9999999999999999999987776543

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.39  E-value=2.6e-12  Score=93.94  Aligned_cols=95  Identities=21%  Similarity=0.399  Sum_probs=75.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCC
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCR   98 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (145)
                      |++|.++.+=.      ...++|.+.|+.+.+|+++++|||+..    |.|+++..            ..++...|.+++
T Consensus         2 v~vi~i~g~i~------~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~------------~~~l~~~i~~~~   59 (207)
T TIGR00706         2 IAILPVSGAIA------VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVA------------SEEIYEKLKKLK   59 (207)
T ss_pred             EEEEEEEEEEe------cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHH------------HHHHHHHHHHhc
Confidence            66677765431      335789999999999999999999974    66766653            234455666666


Q ss_pred             --ccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccc
Q 032207           99 --KPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTH  135 (145)
Q Consensus        99 --kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe  135 (145)
                        ||+|+.++|.|.|+|+.|+++||.+++++++.++..-
T Consensus        60 ~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iG   98 (207)
T TIGR00706        60 AKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIG   98 (207)
T ss_pred             CCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeee
Confidence              9999999999999999999999999999999886543

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.27  E-value=1.8e-11  Score=90.37  Aligned_cols=89  Identities=17%  Similarity=0.212  Sum_probs=75.6

Q ss_pred             CCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccH
Q 032207           32 SLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVT  111 (145)
Q Consensus        32 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G  111 (145)
                      .-+...+.+|.+.|+++.+|+++++|||+..+..| ++.+++++            .+.++++...+||+||.++| +.+
T Consensus        25 ~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el------------~~~i~~~~~~~kpVia~~~~-~~s   90 (222)
T cd07018          25 ESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEEL------------RQALERFRASGKPVIAYADG-YSQ   90 (222)
T ss_pred             CcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHH------------HHHHHHHHHhCCeEEEEeCC-CCc
Confidence            34567889999999999999999999999988777 66565553            44566677789999999998 889


Q ss_pred             HhHHHHHhcCEEEEeCCcEEecc
Q 032207          112 AGFEIALACDVLVAAKGAKFIDT  134 (145)
Q Consensus       112 gG~~l~l~~D~~ia~~~a~f~~p  134 (145)
                      +|+.++++||.+++.+.+.|+..
T Consensus        91 ggy~lasaad~I~a~p~~~vg~i  113 (222)
T cd07018          91 GQYYLASAADEIYLNPSGSVELT  113 (222)
T ss_pred             hhhhhhhhCCEEEECCCceEEee
Confidence            99999999999999999998874

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.13  E-value=4.6e-10  Score=93.27  Aligned_cols=100  Identities=21%  Similarity=0.306  Sum_probs=78.8

Q ss_pred             CCcEEEEEEcCCC--CCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC---CCcccccCCchhhhhhcccCcccHHHHH
Q 032207           16 PMGIAYVTINRPK--SLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS---GRAFCSGVDLTSAEDVFKGDVKDVETDT   90 (145)
Q Consensus        16 ~~~v~~i~l~~~~--~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~---g~~F~~G~dl~~~~~~~~~~~~~~~~~~   90 (145)
                      +++|++|+++.+-  ..+..+....+.+.+.++++.+|+++|+|||+-.   |..|++                +..++.
T Consensus       307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as----------------e~i~~~  370 (584)
T TIGR00705       307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS----------------EIIRRE  370 (584)
T ss_pred             CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH----------------HHHHHH
Confidence            3789999999763  2344444456788999999999999999999953   233432                223445


Q ss_pred             HHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEE
Q 032207           91 VAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF  131 (145)
Q Consensus        91 ~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f  131 (145)
                      +.++...+||+|+.++|.|.+||+.++++||.++|++.+.+
T Consensus       371 i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~  411 (584)
T TIGR00705       371 LARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTIT  411 (584)
T ss_pred             HHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCee
Confidence            56677788999999999999999999999999999999987

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.13  E-value=3e-10  Score=79.72  Aligned_cols=87  Identities=17%  Similarity=0.260  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHhHH
Q 032207           36 SMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFE  115 (145)
Q Consensus        36 ~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~  115 (145)
                      ...+++.+.|+.++.++.+ .+.|.+.|+...+|                  ..++..|..+|||+|+.++|.|.|+|+.
T Consensus        15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG~~~~~------------------~~i~~~i~~~~~pvi~~v~g~a~s~g~~   75 (160)
T cd07016          15 VTAKEFKDALDALGDDSDI-TVRINSPGGDVFAG------------------LAIYNALKRHKGKVTVKIDGLAASAASV   75 (160)
T ss_pred             cCHHHHHHHHHhccCCCCE-EEEEECCCCCHHHH------------------HHHHHHHHhcCCCEEEEEcchHHhHHHH
Confidence            5677888889998877443 44555554432222                  3467778889999999999999999999


Q ss_pred             HHHhcCEEEEeCCcEEeccceeeeec
Q 032207          116 IALACDVLVAAKGAKFIDTHARLVCK  141 (145)
Q Consensus       116 l~l~~D~~ia~~~a~f~~pe~~~G~~  141 (145)
                      ++++||+|+++++++|.+.+...+.+
T Consensus        76 ia~a~d~~~~~~~a~~~~~~~~~~~~  101 (160)
T cd07016          76 IAMAGDEVEMPPNAMLMIHNPSTGAA  101 (160)
T ss_pred             HHhcCCeEEECCCcEEEEECCccccC
Confidence            99999999999999999877665543

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.13  E-value=7.1e-10  Score=79.32  Aligned_cols=97  Identities=22%  Similarity=0.240  Sum_probs=75.2

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCc
Q 032207           20 AYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRK   99 (145)
Q Consensus        20 ~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~k   99 (145)
                      .+|.++.     .+++...+.|.+.|+++++++ ++.|++.=.    |.|+++            .....++..|..+|+
T Consensus         2 ~vi~i~g-----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v------------~~~~~I~~~l~~~~~   59 (178)
T cd07021           2 YVIPIEG-----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRV------------DSALEIVDLILNSPI   59 (178)
T ss_pred             EEEEEee-----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCH------------HHHHHHHHHHHhCCC
Confidence            4566643     366778888999999999876 666666532    112222            234567788899999


Q ss_pred             cEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceee
Q 032207          100 PIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARL  138 (145)
Q Consensus       100 p~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~  138 (145)
                      |+|+.++|.|.++|+.++++||++++++++.|+.++.-.
T Consensus        60 pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v~   98 (178)
T cd07021          60 PTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPIP   98 (178)
T ss_pred             CEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeEc
Confidence            999999999999999999999999999999999886654

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>PRK10949 protease 4; Provisional

Probab=98.30  E-value=5.7e-06  Score=69.39  Aligned_cols=102  Identities=20%  Similarity=0.254  Sum_probs=75.2

Q ss_pred             CCcEEEEEEcCCC-----CCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHH
Q 032207           16 PMGIAYVTINRPK-----SLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDT   90 (145)
Q Consensus        16 ~~~v~~i~l~~~~-----~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~   90 (145)
                      ++.|++|.++..-     ..+.++.   +.+.+.|+++.+|+++|+|||+-..+    |+....         .+..++.
T Consensus       325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp----GGs~~a---------se~i~~~  388 (618)
T PRK10949        325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP----GGSVTA---------SEVIRAE  388 (618)
T ss_pred             CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC----CCcHHH---------HHHHHHH
Confidence            3679999987431     1233443   57888899999999999999996532    111111         2334555


Q ss_pred             HHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEec
Q 032207           91 VAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFID  133 (145)
Q Consensus        91 ~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~  133 (145)
                      +.+++...||+|+.+.+.|..||+-++++||.++|.+.+..+.
T Consensus       389 i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGS  431 (618)
T PRK10949        389 LAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGS  431 (618)
T ss_pred             HHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceee
Confidence            6666777899999999999999999999999999999876544

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=98.24  E-value=1.5e-05  Score=56.80  Aligned_cols=96  Identities=18%  Similarity=0.224  Sum_probs=71.8

Q ss_pred             EEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCc
Q 032207           20 AYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRK   99 (145)
Q Consensus        20 ~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~k   99 (145)
                      .+|.++.     .++....+.|.+.++.++++ ..+.|+|.=.    |.|+.+.            ....++..|...++
T Consensus         2 ~vi~i~G-----~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~------------~~~~I~~~i~~~~~   59 (172)
T cd07015           2 YVAQIKG-----QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRAD------------AAGNIVQRIQQSKI   59 (172)
T ss_pred             EEEEEee-----EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHH------------HHHHHHHHHHhcCc
Confidence            4555542     36777888889999998865 4677766532    2222222            22445677788999


Q ss_pred             cEEEeec---hhccHHhHHHHHhcCEEEEeCCcEEecccee
Q 032207          100 PIIGAIS---GFAVTAGFEIALACDVLVAAKGAKFIDTHAR  137 (145)
Q Consensus       100 p~Ia~v~---G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~  137 (145)
                      |+++.+.   |.|..+|.-++++||.+++.+++.++.....
T Consensus        60 pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi  100 (172)
T cd07015          60 PVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPI  100 (172)
T ss_pred             CEEEEEecCCCeehhHHHHHHHhcCceEECCCCEEEEcccc
Confidence            9999999   9999999999999999999999999876654

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.06  E-value=2.7e-05  Score=60.57  Aligned_cols=108  Identities=19%  Similarity=0.256  Sum_probs=74.7

Q ss_pred             cEEEEEEcCCCC--CCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHh
Q 032207           18 GIAYVTINRPKS--LNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQME   95 (145)
Q Consensus        18 ~v~~i~l~~~~~--~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~   95 (145)
                      .|++|.++.+=.  .+.+..--.+.+.+.|+++..++.++.|+|+=.    |.|+....         .+...+.++++.
T Consensus        60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~a---------s~~i~~~l~~l~  126 (317)
T COG0616          60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRIN----SPGGSVVA---------SELIARALKRLR  126 (317)
T ss_pred             EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhH---------HHHHHHHHHHHh
Confidence            588887775421  111112246677888899999999999988742    11222211         233445555665


Q ss_pred             cCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeee
Q 032207           96 RCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLV  139 (145)
Q Consensus        96 ~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G  139 (145)
                      .-. |+++.+.+.|..||+-+++++|.+||++.+..+---+..+
T Consensus       127 ~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~  169 (317)
T COG0616         127 AKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISG  169 (317)
T ss_pred             hcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEe
Confidence            555 9999999999999999999999999999998876555544

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=98.05  E-value=7.9e-05  Score=56.33  Aligned_cols=94  Identities=18%  Similarity=0.192  Sum_probs=74.4

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           30 LNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        30 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      .+.++.+..+++.++++...++..+-.+ |..      .|+++            ....++.+.+.+++.++++.|...|
T Consensus        69 ~~~I~i~dse~v~raI~~~~~~~~IdLi-i~T------pGG~v------------~AA~~I~~~l~~~~~~v~v~VP~~A  129 (285)
T PF01972_consen   69 YRYIDIDDSEFVLRAIREAPKDKPIDLI-IHT------PGGLV------------DAAEQIARALREHPAKVTVIVPHYA  129 (285)
T ss_pred             ceeEcHhhHHHHHHHHHhcCCCCceEEE-EEC------CCCcH------------HHHHHHHHHHHhCCCCEEEEECccc
Confidence            4568889999999999998877665333 433      23333            2335567788889999999999999


Q ss_pred             cHHhHHHHHhcCEEEEeCCcEEeccceeeeecC
Q 032207          110 VTAGFEIALACDVLVAAKGAKFIDTHARLVCKI  142 (145)
Q Consensus       110 ~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~  142 (145)
                      ..+|.-++++||-+++.+.+.++-.+.++|-.|
T Consensus       130 ~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~p  162 (285)
T PF01972_consen  130 MSAGTLIALAADEIVMGPGAVLGPIDPQIGQYP  162 (285)
T ss_pred             ccHHHHHHHhCCeEEECCCCccCCCCccccCCC
Confidence            999999999999999999999999888885433

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=98.00  E-value=0.0002  Score=55.10  Aligned_cols=109  Identities=17%  Similarity=0.171  Sum_probs=73.6

Q ss_pred             cEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCC----CeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHH
Q 032207           18 GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDE----SVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQ   93 (145)
Q Consensus        18 ~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~----~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~   93 (145)
                      .|+.+-.+..-..-+++....+.+..+++.+.++.    .+-+|.|.-.|+.     .+.+-..... . .......+.+
T Consensus        69 ~v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSGGa-----RlqEg~~~L~-~-~a~i~~~~~~  141 (301)
T PRK07189         69 PVVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETGGV-----RLQEANAGLA-A-IAEIMRAIVD  141 (301)
T ss_pred             EEEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCCCc-----CccchHHHHH-H-HHHHHHHHHH
Confidence            36666666665678899999999999999998765    2556666544332     3322110000 0 0111222334


Q ss_pred             HhcCCccEEEeechh--ccHHhHHHHHhcCEEEEeCCcEEecc
Q 032207           94 MERCRKPIIGAISGF--AVTAGFEIALACDVLVAAKGAKFIDT  134 (145)
Q Consensus        94 l~~~~kp~Ia~v~G~--a~GgG~~l~l~~D~~ia~~~a~f~~p  134 (145)
                      +... +|+|+++-|+  |+||+...+..||++|+++++++++.
T Consensus       142 ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igla  183 (301)
T PRK07189        142 LRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLS  183 (301)
T ss_pred             HhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEecc
Confidence            4444 9999999999  99999999999999999999877663

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=97.99  E-value=3.4e-05  Score=54.38  Aligned_cols=83  Identities=17%  Similarity=0.132  Sum_probs=65.0

Q ss_pred             CCHHHHHHHHHHHHhhccCCCeeEEEEE--cCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207           33 LTRSMMADMAQAFKSLDKDESVLVIILS--GSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV  110 (145)
Q Consensus        33 l~~~~~~~l~~~l~~~~~~~~v~~vvl~--g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~  110 (145)
                      ++..+.+++.+.|..++.++..+.|+|.  +.|+      ++            .....++..|...++|+++.+.|.|.
T Consensus         9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG------~v------------~~~~~i~~~i~~~~~~v~~~~~g~aa   70 (162)
T cd07013           9 VEDISANQFAAQLLFLGAVNPEKDIYLYINSPGG------DV------------FAGMAIYDTIKFIKADVVTIIDGLAA   70 (162)
T ss_pred             ECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCC------cH------------HHHHHHHHHHHhcCCCceEEEEeehh
Confidence            5678899999999999988766766665  3333      22            12345667788889999999999999


Q ss_pred             HHhHHHHHhcC--EEEEeCCcEEec
Q 032207          111 TAGFEIALACD--VLVAAKGAKFID  133 (145)
Q Consensus       111 GgG~~l~l~~D--~~ia~~~a~f~~  133 (145)
                      ++|.-+++++|  .|++.++++|.+
T Consensus        71 S~~~~i~~a~~~g~r~~~p~a~~~i   95 (162)
T cd07013          71 SMGSVIAMAGAKGKRFILPNAMMMI   95 (162)
T ss_pred             hHHHHHHHcCCCCcEEEecCEEEEE
Confidence            99999999999  688888887765

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=97.84  E-value=0.00061  Score=51.90  Aligned_cols=107  Identities=17%  Similarity=0.170  Sum_probs=70.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccC----CCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHH
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKD----ESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQM   94 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~----~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l   94 (145)
                      |+.+-.+..-..-+++...-+.+..+++.+.+|    ..+-+|.+.-.|+     ..+++-..... .. ........++
T Consensus        61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgG-----aRlqEg~~~L~-~~-a~i~~~~~~l  133 (274)
T TIGR03133        61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGG-----VRLQEANAGLI-AI-AEIMRAILDA  133 (274)
T ss_pred             EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCC-----cChhhhHHHHH-HH-HHHHHHHHHH
Confidence            666666665567788888889999999998762    2234665554433     23332111100 00 1112223344


Q ss_pred             hcCCccEEEeechh--ccHHhHHHHHhcCEEEEeCCcEEec
Q 032207           95 ERCRKPIIGAISGF--AVTAGFEIALACDVLVAAKGAKFID  133 (145)
Q Consensus        95 ~~~~kp~Ia~v~G~--a~GgG~~l~l~~D~~ia~~~a~f~~  133 (145)
                      ... .|+|+++-|+  |.||+..++..||++|+++++++++
T Consensus       134 s~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~  173 (274)
T TIGR03133       134 RAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGL  173 (274)
T ss_pred             hCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEec
Confidence            444 9999999999  8999999999999999999987765

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=97.81  E-value=4.5e-06  Score=65.19  Aligned_cols=108  Identities=10%  Similarity=0.047  Sum_probs=93.0

Q ss_pred             cEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhccc---CcccHHHHHHHH
Q 032207           18 GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKG---DVKDVETDTVAQ   93 (145)
Q Consensus        18 ~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~---~~~~~~~~~~~~   93 (145)
                      ++..+.|+ ++ .|..|.++..+|..-++++..+..+++..+|+.. ..|++|.|..++.-....   ..+-++++++..
T Consensus        66 ~~~~~dmv-ie-av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~  143 (380)
T KOG1683|consen   66 GFANADMV-IE-AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILA  143 (380)
T ss_pred             ccccccee-cc-chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHh
Confidence            68888888 55 6999999999999999999999999999999987 999999999886644332   223456788899


Q ss_pred             HhcCCccEEEeechhccHHh--HHHHHhcCEEEEeC
Q 032207           94 MERCRKPIIGAISGFAVTAG--FEIALACDVLVAAK  127 (145)
Q Consensus        94 l~~~~kp~Ia~v~G~a~GgG--~~l~l~~D~~ia~~  127 (145)
                      .+.++.|+.+++||.+--++  +-++.+|+||+...
T Consensus       144 ~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~  179 (380)
T KOG1683|consen  144 LYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRL  179 (380)
T ss_pred             cCCCchHHHHHHhcccccCCccEEeccCCceEEEec
Confidence            99999999999999999998  88999999999873

>PRK11778 putative inner membrane peptidase; Provisional

Probab=97.79  E-value=0.00058  Score=53.31  Aligned_cols=103  Identities=12%  Similarity=0.142  Sum_probs=67.1

Q ss_pred             CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhc
Q 032207           17 MGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMER   96 (145)
Q Consensus        17 ~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~   96 (145)
                      +.|++|.++.+-..+. ...+.+++...++.+..+   +.|||+-..    .|+.+..         .......+.++..
T Consensus        90 ~~v~VI~~~G~I~~~~-~~~l~e~i~a~l~~A~~~---~aVvLridS----pGG~v~~---------s~~a~~~l~~lr~  152 (330)
T PRK11778         90 PRLFVLDFKGDIDASE-VESLREEITAILAVAKPG---DEVLLRLES----PGGVVHG---------YGLAASQLQRLRD  152 (330)
T ss_pred             CeEEEEEEEEEECCCc-chhhHHHHHHHHHhccCC---CeEEEEEeC----CCCchhH---------HHHHHHHHHHHHh
Confidence            6799999986532222 223456666666665533   466666431    1222111         0011222456677


Q ss_pred             CCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccce
Q 032207           97 CRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHA  136 (145)
Q Consensus        97 ~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~  136 (145)
                      ..||+|+.+++.|..||+-++++||.++|.+.+..+..-+
T Consensus       153 ~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGV  192 (330)
T PRK11778        153 AGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGV  192 (330)
T ss_pred             cCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeee
Confidence            8899999999999999999999999999999888765443

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.66  E-value=0.00055  Score=48.86  Aligned_cols=90  Identities=16%  Similarity=0.232  Sum_probs=64.3

Q ss_pred             CCHHHHHHHHHHHHhhccCCCee--EEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207           33 LTRSMMADMAQAFKSLDKDESVL--VIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV  110 (145)
Q Consensus        33 l~~~~~~~l~~~l~~~~~~~~v~--~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~  110 (145)
                      ++.++...+.+.|..++..+..+  .+.|.+.      |+++..            ...++..|..++.|+++.+.|.|.
T Consensus        25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSp------GG~v~~------------g~~i~~~i~~~~~~v~t~~~G~aa   86 (182)
T PF00574_consen   25 IDEESANRLISQLLYLENEDKNKPINIYINSP------GGDVDA------------GLAIYDAIRSSKAPVTTVVLGLAA   86 (182)
T ss_dssp             BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEEC------EBCHHH------------HHHHHHHHHHSSSEEEEEEEEEEE
T ss_pred             cCHHHHHHHHHHHHHHhccCCCceEEEEEcCC------CCccHH------------HHHHHHHHHhcCCCeEEEEeCccc
Confidence            68899999999888774332222  3334443      333322            345677888899999999999999


Q ss_pred             HHhHHHHHhcCE--EEEeCCcEEeccceeeee
Q 032207          111 TAGFEIALACDV--LVAAKGAKFIDTHARLVC  140 (145)
Q Consensus       111 GgG~~l~l~~D~--~ia~~~a~f~~pe~~~G~  140 (145)
                      +.|.-++++|+.  |++.+++.|.+-+...+.
T Consensus        87 Saa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~  118 (182)
T PF00574_consen   87 SAATLIFLAGDKGKRYASPNSRFMIHQPSTGS  118 (182)
T ss_dssp             THHHHHHHTSSTTTEEE-TT-EEEES-CEEEE
T ss_pred             cceehhhhcCCcCceeeeecCEEEeecceeec
Confidence            999999999999  899999999876665543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=97.53  E-value=0.00031  Score=49.84  Aligned_cols=88  Identities=14%  Similarity=0.139  Sum_probs=66.4

Q ss_pred             CCHHHHHHHHHHHHhhccCCCeeEEEEE--cCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207           33 LTRSMMADMAQAFKSLDKDESVLVIILS--GSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV  110 (145)
Q Consensus        33 l~~~~~~~l~~~l~~~~~~~~v~~vvl~--g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~  110 (145)
                      ++.....++...+..+..++..+.|+|.  +.|+      ++..            ...++..|...+.|+++.+.|.|.
T Consensus        18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG------~v~~------------~~~i~~~l~~~~~~v~t~~~g~aa   79 (171)
T cd07017          18 IDDEVANLIIAQLLYLESEDPKKPIYLYINSPGG------SVTA------------GLAIYDTMQYIKPPVSTICLGLAA   79 (171)
T ss_pred             EcHHHHHHHHHHHHHHHccCCCCceEEEEECCCC------CHHH------------HHHHHHHHHhcCCCEEEEEEeEeh
Confidence            5778889999999999877654555443  4333      2221            234556677789999999999999


Q ss_pred             HHhHHHHHhcC--EEEEeCCcEEeccceee
Q 032207          111 TAGFEIALACD--VLVAAKGAKFIDTHARL  138 (145)
Q Consensus       111 GgG~~l~l~~D--~~ia~~~a~f~~pe~~~  138 (145)
                      ++|.-+++++|  .|++.+++.|.+-+...
T Consensus        80 S~~~~i~~~g~~~~r~~~~~a~~~~h~~~~  109 (171)
T cd07017          80 SMGALLLAAGTKGKRYALPNSRIMIHQPLG  109 (171)
T ss_pred             hHHHHHHHcCCCCCEEEccchHHHHcCCCc
Confidence            99999999999  79999999887655443

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=97.53  E-value=0.00072  Score=56.72  Aligned_cols=84  Identities=13%  Similarity=0.160  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHhHHH
Q 032207           37 MMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEI  116 (145)
Q Consensus        37 ~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l  116 (145)
                      .+.++.+.++++.+|+.+++|||.-..   +.|..+..         .+.+.+.+..+....||+||..++.+ -+|+-+
T Consensus        77 ~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~---------~~ei~~ai~~fk~sgKpVvA~~~~~~-s~~Yyl  143 (584)
T TIGR00705        77 SLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPH---------LVEIGSALSEFKDSGKPVYAYGTNYS-QGQYYL  143 (584)
T ss_pred             CHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHH---------HHHHHHHHHHHHhcCCeEEEEEcccc-chhhhh
Confidence            578999999999999999999999753   11333222         12345556666677899999988765 678999


Q ss_pred             HHhcCEEEEeCCcEEec
Q 032207          117 ALACDVLVAAKGAKFID  133 (145)
Q Consensus       117 ~l~~D~~ia~~~a~f~~  133 (145)
                      +.+||-+++.+...++.
T Consensus       144 As~AD~I~~~p~G~v~~  160 (584)
T TIGR00705       144 ASFADEIILNPMGSVDL  160 (584)
T ss_pred             hhhCCEEEECCCceEEe
Confidence            99999999998876644

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=97.48  E-value=0.0032  Score=47.62  Aligned_cols=96  Identities=15%  Similarity=0.144  Sum_probs=69.4

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           30 LNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        30 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      ...++++-.+...+.++.+.+.. +-+|-|.-.++.+. |.+-+      .........+.+..+...++|+|+++-|.|
T Consensus        76 ~G~~~~~g~rKa~R~~~lA~~~~-lPvV~lvDtpGa~~-g~~aE------~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~  147 (256)
T PRK12319         76 FGQPHPEGYRKALRLMKQAEKFG-RPVVTFINTAGAYP-GVGAE------ERGQGEAIARNLMEMSDLKVPIIAIIIGEG  147 (256)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCcCC-CHhHH------hccHHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            46678899999999999988653 55665554444442 32211      111223445566777889999999999999


Q ss_pred             cHHhHHHHHhcCEEEEeCCcEEec
Q 032207          110 VTAGFEIALACDVLVAAKGAKFID  133 (145)
Q Consensus       110 ~GgG~~l~l~~D~~ia~~~a~f~~  133 (145)
                      .|||.-....||++++.+++.++.
T Consensus       148 ~gGgA~a~~~~D~v~m~~~a~~~v  171 (256)
T PRK12319        148 GSGGALALAVADQVWMLENTMYAV  171 (256)
T ss_pred             CcHHHHHhhcCCEEEEecCceEEE
Confidence            999888888999999999988764

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=97.44  E-value=0.0056  Score=46.97  Aligned_cols=108  Identities=18%  Similarity=0.124  Sum_probs=72.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCC
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCR   98 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (145)
                      |+.+..|..-..-+++...-+.+..+++.+.+.. +-+|.+...|+.     -+.+-..... . ..+....+.++....
T Consensus       122 V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~~-lPlV~l~dSgGa-----RmqEg~~sL~-~-~ak~~~~~~~~~~~~  193 (285)
T TIGR00515       122 IVVAVFDFAFMGGSMGSVVGEKFVRAIEKALEDN-CPLIIFSASGGA-----RMQEALLSLM-Q-MAKTSAALAKMSERG  193 (285)
T ss_pred             EEEEEEeccccCCCccHHHHHHHHHHHHHHHHcC-CCEEEEEcCCCc-----ccccchhHHH-h-HHHHHHHHHHHHcCC
Confidence            6666666555678899999999999999998553 567777665443     2221000000 0 011122334566678


Q ss_pred             ccEEEeechhccHHhHH-HHHhcCEEEEeCCcEEecc
Q 032207           99 KPIIGAISGFAVTAGFE-IALACDVLVAAKGAKFIDT  134 (145)
Q Consensus        99 kp~Ia~v~G~a~GgG~~-l~l~~D~~ia~~~a~f~~p  134 (145)
                      .|.|+++.|+|.||+.. +++.+|++||.+++.+++.
T Consensus       194 vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~a  230 (285)
T TIGR00515       194 LPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFA  230 (285)
T ss_pred             CCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcC
Confidence            99999999999999655 6679999999999877653

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=97.38  E-value=0.0007  Score=49.60  Aligned_cols=87  Identities=16%  Similarity=0.160  Sum_probs=65.7

Q ss_pred             CCCHHHHHHHHHHHHhhccCCCeeEEEE--EcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           32 SLTRSMMADMAQAFKSLDKDESVLVIIL--SGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        32 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl--~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      .++..+..++.+.|..++..+..+.|.|  -+.|+      ++..            ...++..|..++.|+++.+.|.|
T Consensus        43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG------~v~~------------g~~I~d~i~~~~~~v~t~~~G~a  104 (207)
T PRK12553         43 QVDDASANDVMAQLLVLESIDPDRDITLYINSPGG------SVTA------------GDAIYDTIQFIRPDVQTVCTGQA  104 (207)
T ss_pred             eECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCC------cHHH------------HHHHHHHHHhcCCCcEEEEEeeh
Confidence            4788999999999999987553344433  34343      3222            23456777788889999999999


Q ss_pred             cHHhHHHHHhcC--EEEEeCCcEEeccce
Q 032207          110 VTAGFEIALACD--VLVAAKGAKFIDTHA  136 (145)
Q Consensus       110 ~GgG~~l~l~~D--~~ia~~~a~f~~pe~  136 (145)
                      .+.|.-++++||  .|++.+++.|.+-..
T Consensus       105 aSaa~lI~~ag~~~~R~~~p~s~imiH~p  133 (207)
T PRK12553        105 ASAGAVLLAAGTPGKRFALPNARILIHQP  133 (207)
T ss_pred             hhHHHHHHHcCCcCcEEECCCchhhhcCc
Confidence            999999999999  599999998876544

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=97.33  E-value=0.0052  Score=47.34  Aligned_cols=108  Identities=11%  Similarity=0.125  Sum_probs=71.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCC
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCR   98 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (145)
                      |+.+-.+..-...+++...-+.+.++++.+.+.. +-+|.|...|+     +.+.+-..... . ..+....+.++....
T Consensus       123 V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~~-lPlV~l~dsgG-----armqEgi~sL~-~-~ak~~~a~~~~~~a~  194 (292)
T PRK05654        123 VVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEEK-CPLVIFSASGG-----ARMQEGLLSLM-Q-MAKTSAALKRLSEAG  194 (292)
T ss_pred             EEEEEEecccccCCccHHHHHHHHHHHHHHHHcC-CCEEEEEcCCC-----cchhhhhhHHH-h-HHHHHHHHHHHHcCC
Confidence            5555555444678999999999999999998664 66777765543     22222000000 0 011222344566678


Q ss_pred             ccEEEeechhccHHhHH-HHHhcCEEEEeCCcEEecc
Q 032207           99 KPIIGAISGFAVTAGFE-IALACDVLVAAKGAKFIDT  134 (145)
Q Consensus        99 kp~Ia~v~G~a~GgG~~-l~l~~D~~ia~~~a~f~~p  134 (145)
                      .|.|+++.|+|.||+.. +++.+|++||.+++.+++.
T Consensus       195 vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~a  231 (292)
T PRK05654        195 LPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFA  231 (292)
T ss_pred             CCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEec
Confidence            99999999999999654 5777999999998877653

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=97.31  E-value=0.0015  Score=47.61  Aligned_cols=86  Identities=13%  Similarity=0.106  Sum_probs=60.5

Q ss_pred             CCCCHHHHHHHHHHHHhhccCCCeeEEE--EEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechh
Q 032207           31 NSLTRSMMADMAQAFKSLDKDESVLVII--LSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGF  108 (145)
Q Consensus        31 N~l~~~~~~~l~~~l~~~~~~~~v~~vv--l~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~  108 (145)
                      ..++..+.+.+...|..++.++..+-|.  |-+.|+      ++.            ....++..|...+.|+++.+.|.
T Consensus        38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG------~v~------------~g~~I~d~i~~~~~~v~t~~~G~   99 (200)
T PRK00277         38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGG------SVT------------AGLAIYDTMQFIKPDVSTICIGQ   99 (200)
T ss_pred             CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCC------cHH------------HHHHHHHHHHhcCCCEEEEEEeE
Confidence            3467888999999999888654333333  334332      222            22345667777888999999999


Q ss_pred             ccHHhHHHHHhcC--EEEEeCCcEEecc
Q 032207          109 AVTAGFEIALACD--VLVAAKGAKFIDT  134 (145)
Q Consensus       109 a~GgG~~l~l~~D--~~ia~~~a~f~~p  134 (145)
                      |.+.|..++++++  .|++.++++|.+-
T Consensus       100 aaS~a~~I~~ag~~~~r~~~p~s~imih  127 (200)
T PRK00277        100 AASMGAFLLAAGAKGKRFALPNSRIMIH  127 (200)
T ss_pred             eccHHHHHHhcCCCCCEEEcCCceEEec
Confidence            9999999999754  6788877777653

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=97.26  E-value=0.0031  Score=51.90  Aligned_cols=106  Identities=15%  Similarity=0.208  Sum_probs=72.6

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccC--CchhhhhhcccCcccHHHHHHHHHhc
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGV--DLTSAEDVFKGDVKDVETDTVAQMER   96 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~--dl~~~~~~~~~~~~~~~~~~~~~l~~   96 (145)
                      |.++..+..-...+++....+.+..+++.+.++. +-+|.|.-     |.|.  ++++-......  .........++..
T Consensus        59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~d-----sgGa~~r~~eg~~~l~~--~g~i~~~~~~~~~  130 (493)
T PF01039_consen   59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVD-----SGGAFLRMQEGVESLMG--MGRIFRAIARLSG  130 (493)
T ss_dssp             EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEE-----ESSBCGGGGGHHHHHHH--HHHHHHHHHHHHT
T ss_pred             EEEEEeccceecCCCCcccceeeehHHHHHHHcC-CCcEEecc-----ccccccccchhhhhhhh--hHHHHHHHHHHhc
Confidence            5555555555678899999999999999998775 45555544     2333  34332211110  1112233445666


Q ss_pred             CCccEEEeechhccHHhHHHHHhcCEEEEeCC-cEEec
Q 032207           97 CRKPIIGAISGFAVTAGFEIALACDVLVAAKG-AKFID  133 (145)
Q Consensus        97 ~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~-a~f~~  133 (145)
                       ..|+|+++.|+|.|||.-++..||++|+.++ +.+.+
T Consensus       131 -~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l  167 (493)
T PF01039_consen  131 -GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFL  167 (493)
T ss_dssp             -TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEES
T ss_pred             -CCCeEEEEccccccchhhcccccCccccCccceEEEe
Confidence             9999999999999999999999999999998 88766

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=97.25  E-value=0.0075  Score=46.95  Aligned_cols=96  Identities=15%  Similarity=0.082  Sum_probs=66.3

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           30 LNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        30 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      ...++++-.+...+.++.+++.. +-+|-|.-.++++. |.+-.+      ........+.+..+.....|+|++|-|.+
T Consensus       132 ~G~~~p~g~rKa~Rlm~lA~~f~-lPIItlvDTpGA~~-G~~AE~------~G~~~aiar~l~~~a~~~VP~IsVViGeg  203 (322)
T CHL00198        132 FGMPSPGGYRKALRLMKHANKFG-LPILTFIDTPGAWA-GVKAEK------LGQGEAIAVNLREMFSFEVPIICTIIGEG  203 (322)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcCc-CHHHHH------HhHHHHHHHHHHHHHcCCCCEEEEEeCcc
Confidence            46688999999999999998653 45555544444443 322211      01123344556667889999999999999


Q ss_pred             cHHhHHHHHhcCEEEEeCCcEEec
Q 032207          110 VTAGFEIALACDVLVAAKGAKFID  133 (145)
Q Consensus       110 ~GgG~~l~l~~D~~ia~~~a~f~~  133 (145)
                      .|||.-....||++++.+++.++.
T Consensus       204 gsGGAlal~~aD~V~m~e~a~~sV  227 (322)
T CHL00198        204 GSGGALGIGIGDSIMMLEYAVYTV  227 (322)
T ss_pred             cHHHHHhhhcCCeEEEeCCeEEEe
Confidence            888865455699999999998764

>PRK10949 protease 4; Provisional

Probab=97.21  E-value=0.0023  Score=53.99  Aligned_cols=84  Identities=13%  Similarity=0.174  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHhHHH
Q 032207           37 MMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEI  116 (145)
Q Consensus        37 ~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l  116 (145)
                      .+.++.++++++.+|+.+++|||.-.+..   |..+..         .+.+.+.+.++....||+||..+.. .-+++-|
T Consensus        96 ~l~div~~i~~Aa~D~rIkgivL~i~s~g---G~~~a~---------~~eI~~ai~~fk~sGKpVvA~~~~~-~s~~YyL  162 (618)
T PRK10949         96 SLFDIVNTIRQAKDDRNITGIVLDLKNFA---GADQPS---------MQYIGKALREFRDSGKPVYAVGDSY-SQGQYYL  162 (618)
T ss_pred             cHHHHHHHHHHHhcCCCceEEEEEeCCCC---CccHHH---------HHHHHHHHHHHHHhCCeEEEEecCc-cchhhhh
Confidence            45689999999999999999999975321   111111         1234555666777789999864444 4678999


Q ss_pred             HHhcCEEEEeCCcEEec
Q 032207          117 ALACDVLVAAKGAKFID  133 (145)
Q Consensus       117 ~l~~D~~ia~~~a~f~~  133 (145)
                      +.+||-+++.+...+++
T Consensus       163 ASaAD~I~l~P~G~v~~  179 (618)
T PRK10949        163 ASFANKIYLSPQGVVDL  179 (618)
T ss_pred             hhhCCEEEECCCceEEE
Confidence            99999999998876654

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=97.17  E-value=0.003  Score=45.95  Aligned_cols=83  Identities=13%  Similarity=0.175  Sum_probs=60.9

Q ss_pred             CCHHHHHHHHHHHHhhccCCCeeEEE--EEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207           33 LTRSMMADMAQAFKSLDKDESVLVII--LSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV  110 (145)
Q Consensus        33 l~~~~~~~l~~~l~~~~~~~~v~~vv--l~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~  110 (145)
                      ++..+...+.+.|..++..+..+.|.  |-+.|+      ++..            ...++..|...+.|+++.+.|.|.
T Consensus        32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG------~v~a------------g~aI~d~i~~~~~~V~t~v~G~Aa   93 (197)
T PRK14512         32 INKDLSELFQEKILLLEALDSKKPIFVYIDSEGG------DIDA------------GFAIFNMIRFVKPKVFTIGVGLVA   93 (197)
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC------CHHH------------HHHHHHHHHhCCCCEEEEEEeeeH
Confidence            67788889898888877633233333  334333      3221            234567788899999999999999


Q ss_pred             HHhHHHHHhcCE--EEEeCCcEEec
Q 032207          111 TAGFEIALACDV--LVAAKGAKFID  133 (145)
Q Consensus       111 GgG~~l~l~~D~--~ia~~~a~f~~  133 (145)
                      +.|.-++++||-  |++.++++|..
T Consensus        94 SaaslIl~ag~~~~R~~~p~s~imi  118 (197)
T PRK14512         94 SAAALIFLAAKKESRFSLPNARYLL  118 (197)
T ss_pred             hHHHHHHhcCCcCceeECCCCcEEE
Confidence            999999999985  89999888743

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=97.16  E-value=0.011  Score=46.09  Aligned_cols=96  Identities=14%  Similarity=0.137  Sum_probs=68.2

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           30 LNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        30 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      .-+++++-.+...+.++.+++- .+-+|-|.-.++++. |.+-.+      ........+.+..+....+|+|++|-|.+
T Consensus       129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~------~G~~~aia~~l~~~a~~~VP~IsVIiGeg  200 (319)
T PRK05724        129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE------RGQSEAIARNLREMARLKVPIICTVIGEG  200 (319)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh------ccHHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            4568899999999999988855 356666655544443 332221      11223445667778899999999999999


Q ss_pred             cHHhHHHHHhcCEEEEeCCcEEec
Q 032207          110 VTAGFEIALACDVLVAAKGAKFID  133 (145)
Q Consensus       110 ~GgG~~l~l~~D~~ia~~~a~f~~  133 (145)
                      .|||.--...||++++.+++.++.
T Consensus       201 ~sGGAla~~~aD~v~m~~~A~~sv  224 (319)
T PRK05724        201 GSGGALAIGVGDRVLMLEYSTYSV  224 (319)
T ss_pred             cHHHHHHHhccCeeeeecCceEee
Confidence            877765555699999999998864

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=97.16  E-value=0.02  Score=44.16  Aligned_cols=108  Identities=9%  Similarity=0.078  Sum_probs=70.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHH-HhcC
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQ-MERC   97 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~-l~~~   97 (145)
                      |+...++..=..-+++...-+.+.++++.+.+.. +-+|.+...|+     +.+++-..... .. .+....+.+ ...-
T Consensus       135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~SGG-----ARmQEg~~sL~-qm-ak~saa~~~~~~~~  206 (296)
T CHL00174        135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCASGG-----ARMQEGSLSLM-QM-AKISSALYDYQSNK  206 (296)
T ss_pred             EEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEECCCC-----ccccccchhhh-hh-HHHHHHHHHHHHcC
Confidence            6666676665678899999999999999998664 55666665443     23322110000 00 111111223 2246


Q ss_pred             CccEEEeechhccHHhHHH-HHhcCEEEEeCCcEEecc
Q 032207           98 RKPIIGAISGFAVTAGFEI-ALACDVLVAAKGAKFIDT  134 (145)
Q Consensus        98 ~kp~Ia~v~G~a~GgG~~l-~l~~D~~ia~~~a~f~~p  134 (145)
                      ..|.|+++.|+|.||+... ++.+|++|+.+++.+++.
T Consensus       207 ~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfA  244 (296)
T CHL00174        207 KLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFA  244 (296)
T ss_pred             CCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEee
Confidence            7999999999999998765 667999999888876653

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=97.01  E-value=0.018  Score=44.83  Aligned_cols=96  Identities=11%  Similarity=0.113  Sum_probs=66.3

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           30 LNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        30 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      .-.++++-.+...+.++.+++-. +-+|-|.-.++++. |.+.++.      .......+.+..+....+|+|++|-|.|
T Consensus       129 ~G~~~p~g~rKa~R~m~lA~~f~-iPvVtlvDTpGa~~-g~~aE~~------G~~~aia~~l~a~s~~~VP~IsVViGeg  200 (316)
T TIGR00513       129 FGMPAPEGYRKALRLMKMAERFK-MPIITFIDTPGAYP-GIGAEER------GQSEAIARNLREMARLGVPVICTVIGEG  200 (316)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCCCC-CHHHHHH------HHHHHHHHHHHHHHcCCCCEEEEEeccc
Confidence            46688999999999999988653 45555554444333 3222211      1123345566677889999999999999


Q ss_pred             cHHhHHHHHhcCEEEEeCCcEEec
Q 032207          110 VTAGFEIALACDVLVAAKGAKFID  133 (145)
Q Consensus       110 ~GgG~~l~l~~D~~ia~~~a~f~~  133 (145)
                      .|||.--...||++++.+++.++.
T Consensus       201 gsGGAla~~~aD~v~m~~~a~~sV  224 (316)
T TIGR00513       201 GSGGALAIGVGDKVNMLEYSTYSV  224 (316)
T ss_pred             ccHHHhhhccCCEEEEecCceEEe
Confidence            777765444699999999988764

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.0085  Score=48.25  Aligned_cols=96  Identities=18%  Similarity=0.290  Sum_probs=74.8

Q ss_pred             CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEE-cCCCcccccCCchhhhhhcccCcccHHHHHHHHHh
Q 032207           17 MGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS-GSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQME   95 (145)
Q Consensus        17 ~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~-g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~   95 (145)
                      +.|..+.++     +.+++...+.+.+.++.++++.. .++|+. ..+                 ....+...+..+.+.
T Consensus        26 ~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTP-----------------GGl~~sm~~iv~~i~   82 (436)
T COG1030          26 KKVYVIEID-----GAIDPASADYLQRALQSAEEENA-AAVVLELDTP-----------------GGLLDSMRQIVRAIL   82 (436)
T ss_pred             CeEEEEEec-----CccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCC-----------------CchHHHHHHHHHHHH
Confidence            568888885     45899999999999999997763 344433 222                 123456788899999


Q ss_pred             cCCccEEEeech---hccHHhHHHHHhcCEEEEeCCcEEeccc
Q 032207           96 RCRKPIIGAISG---FAVTAGFEIALACDVLVAAKGAKFIDTH  135 (145)
Q Consensus        96 ~~~kp~Ia~v~G---~a~GgG~~l~l~~D~~ia~~~a~f~~pe  135 (145)
                      +.|.|++..+.=   +|..+|.-++++||+..+++.+.++-..
T Consensus        83 ~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~  125 (436)
T COG1030          83 NSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAAT  125 (436)
T ss_pred             cCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccc
Confidence            999998877753   5999999999999999999999887544

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=96.87  E-value=0.025  Score=48.29  Aligned_cols=96  Identities=11%  Similarity=0.105  Sum_probs=67.1

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           30 LNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        30 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      .-+.++.-++...+.++.++... +-+|-|.-.++++. |...+..      .......+.+..+....+|+|++|-|.|
T Consensus       220 fG~~~peGyRKAlRlmkLAekfg-LPIVtLVDTpGA~p-G~~AEe~------Gq~~aIArnl~amasl~VP~ISVViGeg  291 (762)
T PLN03229        220 FGMPTPHGYRKALRMMYYADHHG-FPIVTFIDTPGAYA-DLKSEEL------GQGEAIAHNLRTMFGLKVPIVSIVIGEG  291 (762)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCcCC-CchhHHH------hHHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            45778888999999999888653 45555544433332 3222221      1123345566777899999999999999


Q ss_pred             cHHhHHHHHhcCEEEEeCCcEEec
Q 032207          110 VTAGFEIALACDVLVAAKGAKFID  133 (145)
Q Consensus       110 ~GgG~~l~l~~D~~ia~~~a~f~~  133 (145)
                      .|||.-....||++++.+++.++.
T Consensus       292 gSGGAlA~g~aD~VlMle~A~~sV  315 (762)
T PLN03229        292 GSGGALAIGCANKLLMLENAVFYV  315 (762)
T ss_pred             chHHHHHhhcCCEEEEecCCeEEe
Confidence            888877777799999999987653

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=96.75  E-value=0.034  Score=44.73  Aligned_cols=95  Identities=12%  Similarity=0.102  Sum_probs=64.9

Q ss_pred             CCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207           31 NSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV  110 (145)
Q Consensus        31 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~  110 (145)
                      .+++++-.+...+.++.+++.. +-+|-|.-.++++ .|.+.++      ........+.+..+....+|+|++|-|.+.
T Consensus       200 G~~~peGyRKAlR~mklAekf~-lPIVtLVDTpGA~-pG~~AEe------~Gqa~aIAr~l~ams~l~VPiISVViGeGg  271 (431)
T PLN03230        200 AMPQPNGYRKALRFMRHAEKFG-FPILTFVDTPGAY-AGIKAEE------LGQGEAIAFNLREMFGLRVPIIATVIGEGG  271 (431)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcC-CCHHHHH------HhHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            5688999999999999998653 4555555444333 3322222      111233455667788999999999999996


Q ss_pred             HHhHHHHHhcCEEEEeCCcEEec
Q 032207          111 TAGFEIALACDVLVAAKGAKFID  133 (145)
Q Consensus       111 GgG~~l~l~~D~~ia~~~a~f~~  133 (145)
                      +||.-....+|++++.+++.++.
T Consensus       272 SGGAlalg~aD~VlMle~A~ysV  294 (431)
T PLN03230        272 SGGALAIGCGNRMLMMENAVYYV  294 (431)
T ss_pred             cHHHHHhhcCCEEEEecCCEEEe
Confidence            66654445689999999987754

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=96.64  E-value=0.045  Score=45.43  Aligned_cols=104  Identities=17%  Similarity=0.096  Sum_probs=67.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHH--HHhc
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVA--QMER   96 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~--~l~~   96 (145)
                      |+.+-.+..=+.-+++....+.+..+++.+.++. +-+|.|.-.++.     .+.+-....     ..+.+.+.  ...+
T Consensus        84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSgGa-----rm~eg~~~l-----~~~~~~~~~~~~~s  152 (512)
T TIGR01117        84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSGGA-----RIQEAVDAL-----KGYGDIFYRNTIAS  152 (512)
T ss_pred             EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCCCC-----Cccccchhh-----hhHHHHHHHHHHHc
Confidence            5555555554678899999999999999998765 445555543332     222100000     01112222  1223


Q ss_pred             CCccEEEeechhccHHhHHHHHhcCEEEEeCCc-EEec
Q 032207           97 CRKPIIGAISGFAVTAGFEIALACDVLVAAKGA-KFID  133 (145)
Q Consensus        97 ~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a-~f~~  133 (145)
                      -..|.|+++.|+|.||+......||++|+++++ .+.+
T Consensus       153 ~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~  190 (512)
T TIGR01117       153 GVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFI  190 (512)
T ss_pred             CCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEe
Confidence            458999999999999998887899999999874 4443

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=96.64  E-value=0.031  Score=46.35  Aligned_cols=107  Identities=12%  Similarity=0.116  Sum_probs=72.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCC
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCR   98 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (145)
                      |..|--|..-...+++.+-.+...++++.+.+. .+-+|.|.-.++ |..|.+-+.      ........+++..+....
T Consensus       317 V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~E~------~g~~~~~a~~~~a~~~~~  388 (512)
T TIGR01117       317 VGIIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQEY------GGIIRHGAKVLYAYSEAT  388 (512)
T ss_pred             EEEEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHHHH------HHHHHHHHHHHHHHHhCC
Confidence            443433333345679999999999999988754 456666665444 555533221      111223445677788899


Q ss_pred             ccEEEeechhccHHhHHHHH----hcCEEEEeCCcEEec
Q 032207           99 KPIIGAISGFAVTAGFEIAL----ACDVLVAAKGAKFID  133 (145)
Q Consensus        99 kp~Ia~v~G~a~GgG~~l~l----~~D~~ia~~~a~f~~  133 (145)
                      +|.|+.+-|.+.|||+.-..    .+|+++|.+++.++.
T Consensus       389 vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v  427 (512)
T TIGR01117       389 VPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV  427 (512)
T ss_pred             CCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee
Confidence            99999999999888654443    289999999988865

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=96.59  E-value=0.019  Score=41.86  Aligned_cols=87  Identities=10%  Similarity=0.098  Sum_probs=65.3

Q ss_pred             CCCHHHHHHHHHHHHhhccCCCeeEEE--EEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           32 SLTRSMMADMAQAFKSLDKDESVLVII--LSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        32 ~l~~~~~~~l~~~l~~~~~~~~v~~vv--l~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      .++.++.+++...|-.++.++..+-+.  |-+.|+...+                  ...++..|...+.|+...+.|.|
T Consensus        38 ~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~------------------g~aIyd~m~~~~~~V~Tv~~G~A   99 (200)
T CHL00028         38 EVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVIS------------------GLAIYDTMQFVKPDVHTICLGLA   99 (200)
T ss_pred             eecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhh------------------HHHHHHHHHhcCCCEEEEEEEeh
Confidence            378999999999999987554334333  3344432222                  23466778889999999999999


Q ss_pred             cHHhHHHHHhcC--EEEEeCCcEEeccce
Q 032207          110 VTAGFEIALACD--VLVAAKGAKFIDTHA  136 (145)
Q Consensus       110 ~GgG~~l~l~~D--~~ia~~~a~f~~pe~  136 (145)
                      .+.|.-+++++|  .|++.++++|.+-..
T Consensus       100 aS~aslIl~aG~kg~R~~~p~s~imiHqp  128 (200)
T CHL00028        100 ASMASFILAGGEITKRLAFPHARVMIHQP  128 (200)
T ss_pred             HHHHHHHHhCCCCCCEEecCCCeEEEecC
Confidence            999999999999  699999998865443

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=96.48  E-value=0.0059  Score=42.51  Aligned_cols=44  Identities=18%  Similarity=0.325  Sum_probs=32.7

Q ss_pred             HhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEecccee
Q 032207           94 MERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHAR  137 (145)
Q Consensus        94 l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~  137 (145)
                      ..+..||+||.+++.+..+++-++.+||-+++.+.+.++..-+.
T Consensus         2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~   45 (154)
T PF01343_consen    2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVS   45 (154)
T ss_dssp             HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EE
T ss_pred             ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChh
Confidence            34678999999999999999999999999999998887664433

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=96.43  E-value=0.077  Score=44.58  Aligned_cols=107  Identities=16%  Similarity=0.092  Sum_probs=70.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHH---HHh
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVA---QME   95 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~---~l~   95 (145)
                      |+.+--+..-+..+++....+.+..+++.+.+.. +-+|.|.-.++.+-.+ ..+.+      .....+.+++.   ++.
T Consensus       131 V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSgGarl~~-q~e~~------~~~~~~g~if~~~~~ls  202 (569)
T PLN02820        131 CMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSGGANLPR-QAEVF------PDRDHFGRIFYNQARMS  202 (569)
T ss_pred             EEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcCCcc-ccccc------chHhHHHHHHHHHHHHh
Confidence            5555555444678999999999999999988664 5566665444333211 00000      00011223333   355


Q ss_pred             cCCccEEEeechhccHHhHHHHHhcCEEEEeCC-cEEec
Q 032207           96 RCRKPIIGAISGFAVTAGFEIALACDVLVAAKG-AKFID  133 (145)
Q Consensus        96 ~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~-a~f~~  133 (145)
                      ....|.|+++-|+|.|||.-....||++|++++ +.+.+
T Consensus       203 ~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~  241 (569)
T PLN02820        203 SAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFL  241 (569)
T ss_pred             CCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEe
Confidence            567999999999999999999999999999875 54544

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=96.19  E-value=0.11  Score=38.84  Aligned_cols=108  Identities=19%  Similarity=0.212  Sum_probs=65.6

Q ss_pred             CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhh-ccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHH---
Q 032207           17 MGIAYVTINRPKSLNSLTRSMMADMAQAFKSL-DKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVA---   92 (145)
Q Consensus        17 ~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~-~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~---   92 (145)
                      +.-..|.=|+|.  ..++.+--..+...+..+ +++..+-+|.|.-.++ |-.|..-+..      .......++++   
T Consensus        31 G~~V~vIa~~~~--~~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG-~~~g~~aE~~------G~~~a~A~l~~a~a  101 (238)
T TIGR03134        31 GGKVTVIGVVPD--AEVGLDEALALAQAVLDVIEADDKRPIVVLVDTPS-QAYGRREELL------GINQALAHLAKALA  101 (238)
T ss_pred             CEEEEEEEECCC--CcCChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC-CCCCHHHHHH------HHHHHHHHHHHHHH
Confidence            333333344443  268888888888888885 5456666666655432 2222211111      01122233333   


Q ss_pred             HHhcCCccEEEeechhccHHhHH-HHHhcCEEEEeCCcEEec
Q 032207           93 QMERCRKPIIGAISGFAVTAGFE-IALACDVLVAAKGAKFID  133 (145)
Q Consensus        93 ~l~~~~kp~Ia~v~G~a~GgG~~-l~l~~D~~ia~~~a~f~~  133 (145)
                      .....+.|+|+.|-|.+.|||+- +.+.+|.++|-+++.++.
T Consensus       102 ~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~v  143 (238)
T TIGR03134       102 LARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVHV  143 (238)
T ss_pred             HhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEEe
Confidence            44466799999999999988754 555689999998887763

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=96.11  E-value=0.042  Score=39.71  Aligned_cols=87  Identities=13%  Similarity=0.105  Sum_probs=60.7

Q ss_pred             CCCHHHHHHHHHHHHhhccCCCeeEEEE--EcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           32 SLTRSMMADMAQAFKSLDKDESVLVIIL--SGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        32 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl--~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      .++..+.+++...|..++.++..+-|.+  -+.|      +++.            ....++..|...+.|+...+.|.|
T Consensus        34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpG------G~v~------------~g~~I~d~l~~~~~~v~t~~~G~A   95 (191)
T TIGR00493        34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPG------GSIT------------AGLAIYDTMQFIKPDVSTICIGQA   95 (191)
T ss_pred             EEChHHHHHHHHHHHHhhccCCCCCEEEEEECCC------CCHH------------HHHHHHHHHHhcCCCEEEEEEEee
Confidence            3677788888888888886554343433  3333      3322            223455667777777888888999


Q ss_pred             cHHhHHHHHhcC--EEEEeCCcEEeccce
Q 032207          110 VTAGFEIALACD--VLVAAKGAKFIDTHA  136 (145)
Q Consensus       110 ~GgG~~l~l~~D--~~ia~~~a~f~~pe~  136 (145)
                      .+.|.-+++++|  .|++.++++|.+-+.
T Consensus        96 aSaaslI~~aG~~~~r~~~p~s~imiH~p  124 (191)
T TIGR00493        96 ASMGAFLLSAGAKGKRFSLPNSRIMIHQP  124 (191)
T ss_pred             ccHHHHHHhcCCCCcEEecCCceEEEecC
Confidence            999999998766  699999998876443

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=95.90  E-value=0.075  Score=40.42  Aligned_cols=110  Identities=12%  Similarity=0.150  Sum_probs=78.3

Q ss_pred             cEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcC
Q 032207           18 GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERC   97 (145)
Q Consensus        18 ~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~   97 (145)
                      .|+...++-.=-..++....=+.+..+++.+-++. +.+|+++..|+     +-..+-.-..  -...+....+.++...
T Consensus       123 pvv~av~df~FmgGSmGsVvGeki~ra~E~A~e~k-~P~v~f~aSGG-----ARMQEg~lSL--MQMaktsaAl~~l~ea  194 (294)
T COG0777         123 PVVLAVMDFAFMGGSMGSVVGEKITRAIERAIEDK-LPLVLFSASGG-----ARMQEGILSL--MQMAKTSAALKRLSEA  194 (294)
T ss_pred             EEEEEEEeccccccchhHHHHHHHHHHHHHHHHhC-CCEEEEecCcc-----hhHhHHHHHH--HHHHHHHHHHHHHHhc
Confidence            36666776655567888888899999999988665 68888887653     2232210000  0011223456678888


Q ss_pred             CccEEEeechhccHH-hHHHHHhcCEEEEeCCcEEeccc
Q 032207           98 RKPIIGAISGFAVTA-GFEIALACDVLVAAKGAKFIDTH  135 (145)
Q Consensus        98 ~kp~Ia~v~G~a~Gg-G~~l~l~~D~~ia~~~a~f~~pe  135 (145)
                      ..|.|+.+..+..|| -..+++..|+.||.+.|.+++.-
T Consensus       195 ~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAG  233 (294)
T COG0777         195 GLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAG  233 (294)
T ss_pred             CCceEEEecCCCccchhHhHHhccCeeecCcccccccCc
Confidence            999999999999988 46799999999999888887643

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=95.89  E-value=0.067  Score=39.62  Aligned_cols=86  Identities=12%  Similarity=0.122  Sum_probs=60.3

Q ss_pred             CCCHHHHHHHHHHHHhhccCCCee--EEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           32 SLTRSMMADMAQAFKSLDKDESVL--VIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        32 ~l~~~~~~~l~~~l~~~~~~~~v~--~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      .+|....+++...|..++..+.-+  .+.|-+.|+...+|                  ..++..|...+.|+...+.|.|
T Consensus        62 ~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aG------------------laIyd~m~~~~~~V~tv~~G~A  123 (221)
T PRK14514         62 QIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAG------------------LGIYDTMQFISSDVATICTGMA  123 (221)
T ss_pred             EEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhH------------------HHHHHHHHhcCCCEEEEEEEEe
Confidence            467777778887766665432112  23334444332222                  3456788888999999999999


Q ss_pred             cHHhHHHHHhcCE--EEEeCCcEEeccc
Q 032207          110 VTAGFEIALACDV--LVAAKGAKFIDTH  135 (145)
Q Consensus       110 ~GgG~~l~l~~D~--~ia~~~a~f~~pe  135 (145)
                      .+.|.-|++++|.  |++.+++++.+-.
T Consensus       124 AS~AslIl~aG~~gkR~~~pna~iMiHq  151 (221)
T PRK14514        124 ASMASVLLVAGTKGKRSALPHSRVMIHQ  151 (221)
T ss_pred             hhHHHHHHhcCCCCceeeCCCCEEEecc
Confidence            9999999999996  9999998886433

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=95.84  E-value=0.07  Score=38.81  Aligned_cols=86  Identities=12%  Similarity=0.172  Sum_probs=63.3

Q ss_pred             CCCHHHHHHHHHHHHhhccCCCeeEE--EEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           32 SLTRSMMADMAQAFKSLDKDESVLVI--ILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        32 ~l~~~~~~~l~~~l~~~~~~~~v~~v--vl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      .++.+...++...|..++.++..+-+  .|-+.|+...+|                  ..++..|...+.|+...+.|.|
T Consensus        33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g------------------~aIyd~m~~~~~~V~t~~~G~A   94 (196)
T PRK12551         33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDG------------------LGIFDTMQHVKPDVHTVCVGLA   94 (196)
T ss_pred             eecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhH------------------HHHHHHHHhcCCCEEEEEEEEe
Confidence            47889999999999988854433333  333444322222                  3456778888899999999999


Q ss_pred             cHHhHHHHHhcCE--EEEeCCcEEeccc
Q 032207          110 VTAGFEIALACDV--LVAAKGAKFIDTH  135 (145)
Q Consensus       110 ~GgG~~l~l~~D~--~ia~~~a~f~~pe  135 (145)
                      .+.|.-+++++|-  |++.+++++..-.
T Consensus        95 aS~AslIl~aG~~~~R~~~p~a~iMIHq  122 (196)
T PRK12551         95 ASMGAFLLCAGAKGKRSSLQHSRIMIHQ  122 (196)
T ss_pred             hhHHHHHHhCCCCCceecCCCCEEEEec
Confidence            9999999999985  8899998886533

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=95.17  E-value=0.16  Score=37.03  Aligned_cols=86  Identities=15%  Similarity=0.240  Sum_probs=62.8

Q ss_pred             CCCHHHHHHHHHHHHhhccCCCee--EEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           32 SLTRSMMADMAQAFKSLDKDESVL--VIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        32 ~l~~~~~~~l~~~l~~~~~~~~v~--~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      .++.++-+.+...|-.++..+.-+  -+.|-+.|+...+|                  ..++..|...+-|+...+.|.|
T Consensus        35 ~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~G------------------laIyd~m~~~~~~V~Ti~~G~A   96 (201)
T PRK14513         35 PIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAG------------------LAIYDTMRYIKAPVSTICVGIA   96 (201)
T ss_pred             EEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhH------------------HHHHHHHHhcCCCEEEEEEeee
Confidence            478888888888888887543222  33334444322222                  4467788889999999999999


Q ss_pred             cHHhHHHHHhcCE--EEEeCCcEEeccc
Q 032207          110 VTAGFEIALACDV--LVAAKGAKFIDTH  135 (145)
Q Consensus       110 ~GgG~~l~l~~D~--~ia~~~a~f~~pe  135 (145)
                      .+.+.-+++++|-  |++.+++++-+-.
T Consensus        97 aS~As~il~aG~kgkR~~~pna~iMIHq  124 (201)
T PRK14513         97 MSMGSVLLMAGDKGKRMALPNSRIMIHQ  124 (201)
T ss_pred             hhhHHHHHhcCCCCcEEecCCeEEEEec
Confidence            9999999999995  8999999886533

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=95.15  E-value=0.12  Score=42.79  Aligned_cols=95  Identities=9%  Similarity=0.040  Sum_probs=62.0

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEe
Q 032207           25 NRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGA  104 (145)
Q Consensus        25 ~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~  104 (145)
                      +..-+.-++.+-..+.+..+.+.+.++....+.+..+.|      +.+.+-..... . .-....-..+++.. +|.|++
T Consensus        99 D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~dsgG------ari~~~v~~l~-g-~g~iF~~~a~~Sg~-IPqIsv  169 (526)
T COG4799          99 DFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLNDSGG------ARIQEGVPSLA-G-YGRIFYRNARASGV-IPQISV  169 (526)
T ss_pred             cCceecccccccccchHHHHHHHHHHcCCCEEEEEcccc------cccccCccccc-c-chHHHHHHHHhccC-CCEEEE
Confidence            344477888888888888888888876554444444443      33322100000 0 01111112244445 999999


Q ss_pred             echhccHHhHHHHHhcCEEEEeCC
Q 032207          105 ISGFAVTAGFEIALACDVLVAAKG  128 (145)
Q Consensus       105 v~G~a~GgG~~l~l~~D~~ia~~~  128 (145)
                      |-|+|.|||.-+...||++|+.++
T Consensus       170 v~G~c~gGgaY~pal~D~~imv~~  193 (526)
T COG4799         170 VMGPCAGGGAYSPALTDFVIMVRD  193 (526)
T ss_pred             EEecCcccccccccccceEEEEcC
Confidence            999999999999999999999988

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=94.33  E-value=0.36  Score=35.18  Aligned_cols=45  Identities=20%  Similarity=0.202  Sum_probs=39.1

Q ss_pred             HHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEE--EEeCCcEEe
Q 032207           88 TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVL--VAAKGAKFI  132 (145)
Q Consensus        88 ~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~--ia~~~a~f~  132 (145)
                      ...+..|...+.|+...+-|.|...|.-|++++|..  ++.+++++-
T Consensus        75 ~AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrim  121 (200)
T COG0740          75 LAIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIM  121 (200)
T ss_pred             HHHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEE
Confidence            345778889999999999999999999999999985  888887764

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=93.66  E-value=0.37  Score=39.81  Aligned_cols=109  Identities=14%  Similarity=0.123  Sum_probs=69.1

Q ss_pred             CcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHh
Q 032207           17 MGIAYVTINRPK-SLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQME   95 (145)
Q Consensus        17 ~~v~~i~l~~~~-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~   95 (145)
                      |.-.-|.=|+|. ..-+++.+-.+...+.++.+++ ..+-+|.|.-. +.|..|..-+      .........+++..+.
T Consensus       293 G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pGf~~g~~~E------~~g~~~~ga~~~~a~~  364 (493)
T PF01039_consen  293 GRPVGIIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PGFMPGPEAE------RAGIIRAGARLLYALA  364 (493)
T ss_dssp             TEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CEB--SHHHH------HTTHHHHHHHHHHHHH
T ss_pred             CcceEEEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-ccccccchhh------hcchHHHHHHHHHHHH
Confidence            443334444443 2236999999999999999986 45677777654 3344442221      1222344567888999


Q ss_pred             cCCccEEEeechhccHHhHHHHHhc----CEEEEeCCcEEec
Q 032207           96 RCRKPIIGAISGFAVTAGFEIALAC----DVLVAAKGAKFID  133 (145)
Q Consensus        96 ~~~kp~Ia~v~G~a~GgG~~l~l~~----D~~ia~~~a~f~~  133 (145)
                      .++.|.|..+-|.+.|+|..-....    |+++|.++++++.
T Consensus       365 ~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~v  406 (493)
T PF01039_consen  365 EATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGV  406 (493)
T ss_dssp             HH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEES
T ss_pred             cCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeee
Confidence            9999999999999999887555555    8999999998875

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=92.62  E-value=0.34  Score=37.14  Aligned_cols=55  Identities=20%  Similarity=0.409  Sum_probs=38.3

Q ss_pred             HHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHh
Q 032207           42 AQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAG  113 (145)
Q Consensus        42 ~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG  113 (145)
                      .++|+.+++||+.++||+-|+-+                ....+...+++.+ ...+||+|+.+-|.+.=-|
T Consensus       189 id~L~~fe~Dp~T~~ivmiGEiG----------------G~aEe~AA~~i~~-~~~~KPVVa~iaG~tap~g  243 (293)
T COG0074         189 IDALEMFEADPETEAIVMIGEIG----------------GPAEEEAAEYIKA-NATRKPVVAYIAGRTAPEG  243 (293)
T ss_pred             HHHHHHHhcCccccEEEEEecCC----------------CcHHHHHHHHHHH-hccCCCEEEEEeccCCCcc
Confidence            47788889999999999998621                1112334555666 4456999999999876333

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=91.55  E-value=1.5  Score=37.01  Aligned_cols=95  Identities=15%  Similarity=0.095  Sum_probs=68.0

Q ss_pred             CCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207           31 NSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV  110 (145)
Q Consensus        31 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~  110 (145)
                      -.++.+-.+...+.++.+.+ -.+-+|-|.-.++ |..|.+-+.      ........+++..+.....|.|+++-|.+.
T Consensus       380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~pG-f~~G~~~E~------~G~~~~~a~l~~A~a~~~VP~isvi~g~a~  451 (569)
T PLN02820        380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNITG-FMVGSRSEA------SGIAKAGAKMVMAVACAKVPKITIIVGGSF  451 (569)
T ss_pred             CccCHHHHHHHHHHHHHHHh-cCCCEEEEEECCC-CCCCHHHHH------hhHHHHHHHHHHHHHhCCCCEEEEEECCcc
Confidence            45778888888888888875 4566666655433 555544332      122344567788888999999999999999


Q ss_pred             HHhHHHHH----hcCEEEEeCCcEEec
Q 032207          111 TAGFEIAL----ACDVLVAAKGAKFID  133 (145)
Q Consensus       111 GgG~~l~l----~~D~~ia~~~a~f~~  133 (145)
                      |+|.--..    ..|++++.++++++.
T Consensus       452 G~g~~aM~g~~~~~d~~~awp~A~i~v  478 (569)
T PLN02820        452 GAGNYGMCGRAYSPNFLFMWPNARIGV  478 (569)
T ss_pred             hHHHHHhcCcCCCCCEEEECCCCeEEe
Confidence            98765443    679999998888864

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=91.46  E-value=2.2  Score=31.71  Aligned_cols=95  Identities=12%  Similarity=0.102  Sum_probs=65.0

Q ss_pred             CCCHHHHHHHHHHHHhhccCCCee--EEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           32 SLTRSMMADMAQAFKSLDKDESVL--VIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        32 ~l~~~~~~~l~~~l~~~~~~~~v~--~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      ..+.++-+.+...|-.++.++..+  -+-|-+.|+...+|-=+..         ......++..|...+-++...+.|.|
T Consensus        48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~---------v~~glaIyD~m~~ik~~V~Tv~~G~A  118 (222)
T PRK12552         48 QVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGF---------ETEAFAICDTMRYIKPPVHTICIGQA  118 (222)
T ss_pred             chhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccc---------cccHHHHHHHHHhcCCCeEEEEEeeh
Confidence            345558888888888886544323  3444565655545411100         11234567778888889999999999


Q ss_pred             cHHhHHHHHhcCE--EEEeCCcEEeccc
Q 032207          110 VTAGFEIALACDV--LVAAKGAKFIDTH  135 (145)
Q Consensus       110 ~GgG~~l~l~~D~--~ia~~~a~f~~pe  135 (145)
                      .+.+.-|++++|-  |++-+++++-+-.
T Consensus       119 aS~AslIl~aG~kg~R~alpns~iMIHq  146 (222)
T PRK12552        119 MGTAAMILSAGTKGQRASLPHATIVLHQ  146 (222)
T ss_pred             hhHHHHHHhCCCCCceecCCCcEEEecc
Confidence            9999999999995  8998998886433

>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A

Probab=91.33  E-value=0.72  Score=31.61  Aligned_cols=51  Identities=24%  Similarity=0.259  Sum_probs=30.7

Q ss_pred             HHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechh
Q 032207           40 DMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGF  108 (145)
Q Consensus        40 ~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~  108 (145)
                      .+.+.++.+.+||++|+|++.-++-                 ...+.+.+..++.... ||+|+..-|.
T Consensus        41 ~~~d~l~~~~~D~~t~~I~ly~E~~-----------------~d~~~f~~~~~~a~~~-KPVv~lk~Gr   91 (138)
T PF13607_consen   41 DFADLLEYLAEDPDTRVIVLYLEGI-----------------GDGRRFLEAARRAARR-KPVVVLKAGR   91 (138)
T ss_dssp             -HHHHHHHHCT-SS--EEEEEES-------------------S-HHHHHHHHHHHCCC-S-EEEEE---
T ss_pred             CHHHHHHHHhcCCCCCEEEEEccCC-----------------CCHHHHHHHHHHHhcC-CCEEEEeCCC
Confidence            5778888999999999999987641                 0123455566676666 9999999997

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=88.93  E-value=0.84  Score=35.20  Aligned_cols=97  Identities=14%  Similarity=0.176  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhhccCCCeeEEEEEc-CCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHh
Q 032207           35 RSMMADMAQAFKSLDKDESVLVIILSG-SGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAG  113 (145)
Q Consensus        35 ~~~~~~l~~~l~~~~~~~~v~~vvl~g-~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG  113 (145)
                      ++-++.=...++.+++=. .-+|-|-- .|-+-..|+  ++      ....+...+-+..|.+++.|+|+.|=|---+||
T Consensus       133 PeGyRKAlRlm~~AekF~-lPiitfIDT~GAypG~~A--EE------rGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGG  203 (317)
T COG0825         133 PEGYRKALRLMKLAEKFG-LPIITFIDTPGAYPGIGA--EE------RGQSEAIARNLREMARLKVPIISIVIGEGGSGG  203 (317)
T ss_pred             chHHHHHHHHHHHHHHhC-CCEEEEecCCCCCCCcch--hh------cccHHHHHHHHHHHhCCCCCEEEEEecCCCchh
Confidence            777777777777776432 23333333 333222221  11      111234455677889999999999999866666


Q ss_pred             HHHHHhcCEEEEeCCcEEeccceeeeecCCCC
Q 032207          114 FEIALACDVLVAAKGAKFIDTHARLVCKISCS  145 (145)
Q Consensus       114 ~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~s  145 (145)
                      .-=..-+|.+.+-+++.++.     --|+||+
T Consensus       204 ALAi~vad~V~mle~s~ySV-----isPEG~A  230 (317)
T COG0825         204 ALAIGVADRVLMLENSTYSV-----ISPEGCA  230 (317)
T ss_pred             hHHhhHHHHHHHHHhceeee-----cChhhhh
Confidence            54444569999999988864     3567774

>PLN02522 ATP citrate (pro-S)-lyase

Probab=87.33  E-value=1.4  Score=37.51  Aligned_cols=53  Identities=15%  Similarity=0.285  Sum_probs=35.8

Q ss_pred             HHHHHHHhhccCCCeeEEEEEcC-CCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207           40 DMAQAFKSLDKDESVLVIILSGS-GRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV  110 (145)
Q Consensus        40 ~l~~~l~~~~~~~~v~~vvl~g~-g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~  110 (145)
                      .+.+.|+.+++||++++|++.++ |.                 ...+.+.+..++.. ..||+|+..-|.+.
T Consensus       209 ~~~D~L~~~~~Dp~Tk~IvlygEiGg-----------------~~e~~f~ea~~~a~-~~KPVVa~kaGrsa  262 (608)
T PLN02522        209 TLSDHVLRFNNIPQIKMIVVLGELGG-----------------RDEYSLVEALKQGK-VSKPVVAWVSGTCA  262 (608)
T ss_pred             CHHHHHHHHhcCCCCCEEEEEEecCc-----------------hhHHHHHHHHHHhc-CCCCEEEEeccCCC
Confidence            35677777888888888888876 42                 01222333344433 78999999999976

>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional

Probab=87.15  E-value=1.7  Score=33.95  Aligned_cols=54  Identities=19%  Similarity=0.315  Sum_probs=33.4

Q ss_pred             HHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207           40 DMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV  110 (145)
Q Consensus        40 ~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~  110 (145)
                      .+.+.|+.+++||+.++|++.++...     +-           .+...+++.. ....||+|+.+-|...
T Consensus       211 ~~~D~L~~~~~Dp~T~~Ivl~~E~gG-----~~-----------e~~aa~fi~~-~~~~KPVVa~~aGrsa  264 (317)
T PTZ00187        211 NFIDCLKLFLNDPETEGIILIGEIGG-----TA-----------EEEAAEWIKN-NPIKKPVVSFIAGITA  264 (317)
T ss_pred             CHHHHHHHHhhCCCccEEEEEEecCC-----ch-----------hHHHHHHHHh-hcCCCcEEEEEecCCC
Confidence            35567777777888888888876310     00           1111223322 3468999999999874

>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3

Probab=84.39  E-value=3.2  Score=32.16  Aligned_cols=78  Identities=17%  Similarity=0.236  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHhhccCC---CeeEEEE-EcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207           35 RSMMADMAQAFKSLDKDE---SVLVIIL-SGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV  110 (145)
Q Consensus        35 ~~~~~~l~~~l~~~~~~~---~v~~vvl-~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~  110 (145)
                      .....++.++++.+...+   .+.+||| +|+|.       ++++..       -.-..+.+.+..+|.|+|++| ||-.
T Consensus        54 ~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs-------~eDL~~-------FN~e~varai~~~~~PvisaI-GHe~  118 (319)
T PF02601_consen   54 EGAAASIVSALRKANEMGQADDFDVIIIIRGGGS-------IEDLWA-------FNDEEVARAIAASPIPVISAI-GHET  118 (319)
T ss_pred             cchHHHHHHHHHHHHhccccccccEEEEecCCCC-------hHHhcc-------cChHHHHHHHHhCCCCEEEec-CCCC
Confidence            345677888888887554   4666655 45432       222111       112457889999999999998 6643


Q ss_pred             HHhHHHHHhcCEEEEeCC
Q 032207          111 TAGFEIALACDVLVAAKG  128 (145)
Q Consensus       111 GgG~~l~l~~D~~ia~~~  128 (145)
                      =- .-.=+.+|+|..|+.
T Consensus       119 D~-ti~D~vAd~ra~TPt  135 (319)
T PF02601_consen  119 DF-TIADFVADLRAPTPT  135 (319)
T ss_pred             Cc-hHHHHHHHhhCCCHH
Confidence            33 223356777777765

1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity

>TIGR00237 xseA exodeoxyribonuclease VII, large subunit

Probab=82.50  E-value=3  Score=33.94  Aligned_cols=80  Identities=13%  Similarity=0.217  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHh
Q 032207           34 TRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAG  113 (145)
Q Consensus        34 ~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG  113 (145)
                      ......++.++++.+...+++.+|||.=+|+.      ++++...       .-..+.+.+..+|.|+|++| ||-.=--
T Consensus       168 G~~a~~~i~~al~~~~~~~~~dviii~RGGGs------~eDL~~F-------n~e~~~rai~~~~~Pvis~i-GHe~D~t  233 (432)
T TIGR00237       168 GEGAVQSIVESIELANTKNECDVLIVGRGGGS------LEDLWSF-------NDEKVARAIFLSKIPIISAV-GHETDFT  233 (432)
T ss_pred             CccHHHHHHHHHHHhhcCCCCCEEEEecCCCC------HHHhhhc-------CcHHHHHHHHcCCCCEEEec-CcCCCcc
Confidence            34556788888888876555666666433221      2222111       11457789999999999998 5533221


Q ss_pred             HHHHHhcCEEEEeCC
Q 032207          114 FEIALACDVLVAAKG  128 (145)
Q Consensus       114 ~~l~l~~D~~ia~~~  128 (145)
                      + .=+.+|.|..|+.
T Consensus       234 i-~D~vAd~ra~TPt  247 (432)
T TIGR00237       234 I-SDFVADLRAPTPS  247 (432)
T ss_pred             H-HHHhhhccCCCcH
Confidence            1 2356788888876

This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	145
3myb_A	286	Crystal Structure Of Enoyl-Coa Hydratase Mycobacter		1e-19
2pbp_A	258	Crystal Structure Of Enoyl-Coa Hydrates Subunit I (		3e-18
3p85_A	270	Crystal Structure Enoyl-Coa Hydratase From Mycobact		1e-17
3qyr_A	253	Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M		1e-17
3h81_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		2e-17
3q0j_A	258	Crystal Structure Of The Mycobacterium Tuberculosis		2e-17
3pzk_A	257	Crystal Structure Of The Mycobacterium Tuberculosis		2e-17
3pe8_A	256	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		2e-16
4f47_A	278	The Structure Of Enoyl-Coa Hydratase Echa19 From My		3e-16
4fzw_A	258	Crystal Structure Of The Paaf-paag Hydratase-isomer		9e-16
1mj3_A	260	Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata		2e-15
1ey3_A	258	Structure Of Enoyl-Coa Hydratase Complexed With The		2e-15
1dub_A	261	2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph		2e-15
3qxi_A	265	Crystal Structure Of Enoyl-Coa Hydratase Echa1 From		3e-15
3sll_A	290	Crystal Structure Of A Probable Enoyl-Coa Hydratase		4e-15
3qka_A	261	Crystal Structure Of Enoyl-Coa Hydratase Echa5 From		5e-15
3moy_A	263	Crystal Structure Of Probable Enoyl-Coa Hydratase F		1e-14
2hw5_A	286	The Crystal Structure Of Human Enoyl-Coenzyme A (Co		1e-14
3tlf_A	274	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		1e-14
3trr_A	256	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-14
3hrx_A	254	Crystal Structure Of Phenylacetic Acid Degradation		4e-14
3he2_A	264	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		6e-14
2vre_A	296	Crystal Structure Of Human Peroxisomal Delta3,5, De		9e-14
3q1t_A	278	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		1e-13
3t88_A	289	Crystal Structure Of Escherichia Coli Menb In Compl		3e-13
4els_A	285	Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Co		3e-13
1dci_A	275	Dienoyl-Coa Isomerase Length = 275		4e-13
3p5m_A	255	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		5e-13
3qxz_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		6e-13
2ej5_A	257	Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr		1e-12
3qk8_A	272	Crystal Structure Of Enoyl-Coa Hydratase Echa15 Fro		2e-12
3rrv_A	276	Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS		2e-12
2uzf_A	273	Crystal Structure Of Staphylococcus Aureus 1,4-Dihy		3e-12
2iex_A	272	Crystal Structure Of Dihydroxynapthoic Acid Synthet		3e-12
3h02_A	288	2.15 Angstrom Resolution Crystal Structure Of Napht		4e-12
4fzw_C	274	Crystal Structure Of The Paaf-paag Hydratase-isomer		4e-12
3rsi_A	265	The Structure Of A Putative Enoyl-Coa HydrataseISOM		8e-12
3oc7_A	267	Crystal Structure Of An Enoyl-Coa Hydratase From My		1e-11
3qre_A	298	Crystal Structure Of An Enoyl-Coa Hydratase Echa12_		2e-11
2j5i_A	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		2e-11
2j5i_I	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		2e-11
2j5i_B	276	Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase		2e-11
2vss_E	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		2e-11
2vss_F	276	Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C		2e-11
2vsu_C	275	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		2e-11
2vsu_A	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		2e-11
2vsu_E	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		3e-11
2vsu_F	276	A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase		3e-11
1jxz_A	269	Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe		2e-10
1nzy_A	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		2e-10
1nzy_B	269	4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo		2e-10
3kqf_A	265	1.8 Angstrom Resolution Crystal Structure Of Enoyl-		2e-10
3pea_A	261	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		4e-10
3r9t_A	267	Structure Of Echa1_1 From Mycobacterium Paratubercu		5e-10
3l3s_A	263	Crystal Structure Of An Enoyl-Coa HydrotaseISOMERAS		5e-10
3r9s_A	267	Structure Of A Carnitinyl-Coa Dehydratase From Myco		6e-10
3r0o_A	273	Crystal Structure Of Carnitinyl-Coa Hydratase From		8e-10
1uiy_A	253	Crystal Structure Of Enoyl-Coa Hydratase From Therm		8e-10
3r9q_A	262	Structure Of A Probable Enoyl-Coa HydrataseISOMERAS		1e-09
3swx_A	265	Crystal Structure Of A Probable Enoyl-Coa Hydratase		2e-09
3ome_A	282	Crystal Structure Of A Probable Enoyl-Coa Hydratase		4e-09
4hdt_A	353	Crystal Structure Of A Carnitinyl-Coa Dehydratase F		5e-09
3t3w_A	279	Crystal Structure Of Probable Enoyl-Coa Hydratase F		6e-09
2f6q_A	280	The Crystal Structure Of Human Peroxisomal Delta3,		8e-09
3njb_A	333	Crystal Structure Of Enoyl-Coa Hydratase From Mycob		1e-08
4eml_A	275	Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoy		1e-08
2a7k_A	250	Carboxymethylproline Synthase (carb) From Pectobact		3e-08
3qmj_A	256	Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr		4e-08
3fdu_A	266	Crystal Structure Of A Putative Enoyl-Coa Hydratase		4e-08
3lke_A	263	Crystal Structure Of Enoyl-Coa Hydratase From Bacil		8e-08
3hin_A	275	Crystal Structure Of Putative Enoyl-Coa Hydratase F		1e-07
3g64_A	279	Crystal Structure Of Putative Enoyl-Coa Hydratase F		2e-07
3bpt_A	363	Crystal Structure Of Human Beta-Hydroxyisobutyryl-C		2e-07
2vx2_A	287	Crystal Structure Of Human Enoyl Coenzyme A Hydrata		7e-07
4di1_A	277	Crystal Structure Of Enoyl-Coa Hydratase Echa17 Fro		8e-07
1ef8_A	261	Crystal Structure Of Methylmalonyl Coa Decarboxylas		3e-06
2j5g_D	263	The Native Structure Of A Beta-Diketone Hydrolase F		5e-06
2j5g_A	263	The Native Structure Of A Beta-Diketone Hydrolase F		5e-06
1szo_A	257	Crystal Structure Analysis Of The 6-Oxo Camphor Hyd		6e-06
1o8u_A	257	The 2 Angstrom Structure Of 6-oxo Camphor Hydrolase		7e-06
4j2u_A	365	Crystal Structure Of An Enoyl-coa Hydratase From Rh		7e-06
1wdk_A	715	Fatty Acid Beta-Oxidation Multienzyme Complex From		1e-05
3lao_A	258	Crystal Structure Of Enoyl-Coa Hydratase From Pseud		2e-05
2gtr_A	261	Human Chromodomain Y-Like Protein Length = 261		2e-05
3i47_A	268	Crystal Structure Of Putative Enoyl Coa HydrataseIS		4e-05
2wtb_A	725	Arabidopsis Thaliana Multifuctional Protein, Mfp2 L		6e-05
2fw2_A	260	Catalytic Domain Of Cdy Length = 260		7e-05
2fbm_A	291	Acetyltransferase Domain Of Cdy1 Length = 291		2e-04

>pdb|3MYB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Mycobacterium Smegm Length = 286

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 79/130 (60%), Gaps = 4/130 (3%)
Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
           SE L+L  RD  G+  +T+NRP++ N+L+ +M+A + +AF +L +DESV  ++L+ SG+A
Sbjct: 23  SEPLLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKA 82
Query: 66  FCSGVDLTS--AEDVFKGDVKDVE--TDTVAQMERCRKPIIGAISGFAVTAGFEIALACD 121
           FC+G DL    AE   +   K     TD +  ++R   P+I  + G A  AG ++   CD
Sbjct: 83  FCAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCD 142
Query: 122 VLVAAKGAKF 131
           + VA + A+F
Sbjct: 143 LAVATRDARF 152

>pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258

Iteration: 1
 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 81/130 (62%), Gaps = 7/130 (5%)
Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
           SE + +  R    +  + + RP  LN+L+R M+A++  A ++ D++E V VI+L+G GRA
Sbjct: 2   SEFVSIAARQEGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRA 61
Query: 66  FCSGVDLTSAEDVFKGDVKDVET-DTVAQMER---CRKPIIGAISGFAVTAGFEIALACD 121
           F +G D+   +++ K D   +E  +  A  +R    + P+I A++G A+  GFE+AL+CD
Sbjct: 62  FAAGADI---QEMAKDDPIRLEWLNQFADWDRLSIVKTPMIAAVNGLALGGGFELALSCD 118
Query: 122 VLVAAKGAKF 131
           ++VA+  A+F
Sbjct: 119 LIVASSAAEF 128

>pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 75/129 (58%), Gaps = 6/129 (4%)
Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           IL++     +  +T+NRP++ N+L+ ++      A    + D+ V V+I++G+   FC+G
Sbjct: 26  ILLSNTEERVRTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITGADPVFCAG 85
Query: 70  VDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGA 129
           +DL        G       D   +     KP+IGAI+G AVT G E+AL CD+L+A++ A
Sbjct: 86  LDLKE----LGG--SSALPDISPRWPALTKPVIGAINGAAVTGGLELALYCDILIASENA 139
Query: 130 KFIDTHARL 138
           +F DTHAR+
Sbjct: 140 RFADTHARV 148

>pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 75/129 (58%), Gaps = 6/129 (4%)
Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           IL++     +  +T+NRP++ N+L+ ++      A    + D+ V V+I++G+   FC+G
Sbjct: 9   ILLSNTEERVRTLTLNRPQARNALSAALRDRFFGALADAETDDDVDVVIITGADPVFCAG 68
Query: 70  VDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGA 129
           +DL        G       D   +     KP+IGAI+G AVT G E+AL CD+L+A++ A
Sbjct: 69  LDLKE----LGG--SSALPDISPRWPALTKPVIGAINGAAVTGGLELALYCDILIASENA 122
Query: 130 KFIDTHARL 138
           +F DTHAR+
Sbjct: 123 RFADTHARV 131

>pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           ILV RD   +  +T+NRP++LN+L   +M ++  A   LD D  +  II++GS +AF +G
Sbjct: 27  ILVERDQR-VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAG 85
Query: 70  VDLTSAEDVFKGDVKDVE-TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG 128
            D+    D+   D    +   T  ++   R P I A++G+A+  G E+A+ CDVL+AA  
Sbjct: 86  ADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADT 145
Query: 129 AKF 131
           AKF
Sbjct: 146 AKF 148

>pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           ILV RD   +  +T+NRP++LN+L   +M ++  A   LD D  +  II++GS +AF +G
Sbjct: 7   ILVERDQR-VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAG 65
Query: 70  VDLTSAEDVFKGDVKDVE-TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG 128
            D+    D+   D    +   T  ++   R P I A++G+A+  G E+A+ CDVL+AA  
Sbjct: 66  ADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADT 125
Query: 129 AKF 131
           AKF
Sbjct: 126 AKF 128

>pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           ILV RD   +  +T+NRP++LN+L   +M ++  A   LD D  +  II++GS +AF +G
Sbjct: 6   ILVERDQR-VGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAG 64
Query: 70  VDLTSAEDVFKGDVKDVE-TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG 128
            D+    D+   D    +   T  ++   R P I A++G+A+  G E+A+ CDVL+AA  
Sbjct: 65  ADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADT 124
Query: 129 AKF 131
           AKF
Sbjct: 125 AKF 127

>pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 73/117 (62%), Gaps = 6/117 (5%)
Query: 22  VTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG 81
           +T+NRP+S N+L+  + +   +A      D+ V V+I++G+   FC+G+DL        G
Sbjct: 22  LTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKEL-----G 76
Query: 82  DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARL 138
           D  ++  D   +     KP+IGAI+G AVT G E+AL CD+L+A++ AKF DTHAR+
Sbjct: 77  DTTELP-DISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARV 132

>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 6/123 (4%)
Query: 22  VTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAE----- 76
           VT+NRP   N+L+  MM  M +A+  +D D  +   IL+G+G  FC+G+DL +A      
Sbjct: 33  VTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPG 92
Query: 77  DVFK-GDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTH 135
           D FK G       D + +  R +KP+I A+ G A+  G EI    D+ VAA+ AKF  + 
Sbjct: 93  DSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISE 152
Query: 136 ARL 138
           A+ 
Sbjct: 153 AKW 155

>pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258

Iteration: 1
 Score = 79.0 bits (193), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 75/128 (58%), Gaps = 2/128 (1%)
Query: 5   KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGR 64
           +S + ++V+R    +  +T+NRP + N+L  +++  +    ++   D S+ V +++G+ R
Sbjct: 2   RSMSELIVSRQ-QRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNAR 60
Query: 65  AFCSGVDLTS-AEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVL 123
            F +G DL   AE      + D      A+++   KP+I A++G+A+ AG E+AL CDV+
Sbjct: 61  FFAAGADLNEMAEKDLAATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVV 120
Query: 124 VAAKGAKF 131
           VA + A+F
Sbjct: 121 VAGENARF 128

>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 19  IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED- 77
           +  + +NRPK+LN+L   ++ ++ QA ++ ++D +V  I+L+G  +AF +G D+   ++ 
Sbjct: 17  VGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNR 76
Query: 78  VFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
            F+             + R +KP+I A++G+A+  G E+A+ CD++ A + A+F
Sbjct: 77  TFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQF 130

>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 19  IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED- 77
           +  + +NRPK+LN+L   ++ ++ QA ++ ++D +V  I+L+G  +AF +G D+   ++ 
Sbjct: 15  VGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNR 74
Query: 78  VFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
            F+             + R +KP+I A++G+A+  G E+A+ CD++ A + A+F
Sbjct: 75  TFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQF 128

>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 19  IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED- 77
           +  + +NRPK+LN+L   ++ ++ QA ++ ++D +V  I+L+G  +AF +G D+   ++ 
Sbjct: 18  VGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNR 77
Query: 78  VFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
            F+             + R +KP+I A++G+A+  G E+A+ CD++ A + A+F
Sbjct: 78  TFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQF 131

>pdb|3QXI|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa1 From Mycobacterium Marinum Length = 265

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 78/131 (59%), Gaps = 7/131 (5%)
Query: 2   GQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61
           G T+ E L+   RD   I  +TINRPK+ NS+  ++   +A A   LD D  + V IL+G
Sbjct: 11  GDTEPEVLV-EQRD--RILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTG 67
Query: 62  SGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCR-KPIIGAISGFAVTAGFEIALAC 120
           +G +FC+G+DL +     +G+   VE   +   ER   KP+I A+ G+A+  G E+ALA 
Sbjct: 68  AGGSFCAGMDLKA---FARGENVVVEGRGLGFTERPPAKPLIAAVEGYALAGGTELALAT 124
Query: 121 DVLVAAKGAKF 131
           D++VAA+ + F
Sbjct: 125 DLIVAARDSAF 135

>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290

Iteration: 1
 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
           S + +LV R    IA VT+NRP+ +N++   +M    Q    +  D  V  ++++G+G+ 
Sbjct: 21  SMSFVLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKG 80
Query: 66  FCSGVDLTSAEDVFKGDVKDVETDTVA------------QMERCRKPIIGAISGFAVTAG 113
           FCSG D  SA  +    +  +   T+A             + R  +P+I AI+G A+  G
Sbjct: 81  FCSGADQKSAGPIPH--IGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGG 138
Query: 114 FEIALACDVLVAAKGAKF 131
             +ALACDV VA++ A F
Sbjct: 139 LCLALACDVRVASQDAYF 156

>pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 8/128 (6%)
Query: 8   NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFC 67
           +L+ V R+   +  V INRP++ N++     A +  AF   D+DES  V +L G+G  FC
Sbjct: 8   DLVQVERN-GPVTTVIINRPQARNAVNGPTAAALYSAFAEFDRDESASVAVLCGNGGTFC 66
Query: 68  SGVDLTSAEDVFKGDVKDVETDTVAQMERCR----KPIIGAISGFAVTAGFEIALACDVL 123
           +G DL +       +   V       M   R    KP+I A+SG+AV  G E+AL CD+ 
Sbjct: 67  AGADLKA---FGTAEANAVHRTGPGPMGPSRMMLSKPVIAAVSGYAVAGGLELALWCDLR 123
Query: 124 VAAKGAKF 131
           VA + A F
Sbjct: 124 VAEQDAVF 131

>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 78/133 (58%), Gaps = 5/133 (3%)
Query: 2   GQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61
           G   +   I  +R   G+  + ++RP +LN+L +++ A++  A +  D D  +  I+++G
Sbjct: 3   GSMTTYTTIATSRPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTG 62
Query: 62  SGRAFCSGVDLTSAEDVFKGDVKDVETDTVA---QMERCRKPIIGAISGFAVTAGFEIAL 118
           S RAF +G D+  AE V     +  E + ++    + + RKPI+ A++G+A+  G E+A+
Sbjct: 63  SERAFAAGADI--AEMVTLTPHQARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAM 120
Query: 119 ACDVLVAAKGAKF 131
            CD+++AA  A+F
Sbjct: 121 LCDLVIAADTARF 133

>pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 19  IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDV 78
           +  + +NRPK+LN+L   ++ ++ QA K  ++D +V  I+L+G  +AF +G D+   +++
Sbjct: 43  VGLIQLNRPKALNALCDGLIDELNQALKIFEEDPAVGAIVLTGGDKAFAAGADIKEMQNL 102
Query: 79  -FKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
            F+             + + +KP+I A++G+A   G E+A+ CD++ A + A+F
Sbjct: 103 SFQDCYSSKFLKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQF 156

>pdb|3TLF|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 274

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 68/126 (53%), Gaps = 10/126 (7%)
Query: 20  AYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVF 79
           A +T+NRP +LN+L+  M+ ++  A+   + D+ V +++++G+GRAFCSG D+    +  
Sbjct: 22  ATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDG 81
Query: 80  KGDVKDVETDTVAQMERCR----------KPIIGAISGFAVTAGFEIALACDVLVAAKGA 129
           K   +     T  Q E  +          KP++ A++G    AG +     D+++A++ A
Sbjct: 82  KVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQA 141
Query: 130 KFIDTH 135
            F D H
Sbjct: 142 TFFDPH 147

>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Query: 22  VTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG 81
           +TINRP + N++ R++   +A A   LD    + V I++G+G  FC+G+DL +      G
Sbjct: 20  ITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKA---FVSG 76
Query: 82  DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
           +    E          RKPII A+ GFA+  G E+ L+CD++VA + AKF
Sbjct: 77  EAVLSERGLGFTNVPPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKF 126

>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 18/131 (13%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED 77
           G+  +T+NRP+ LN++T  ++  +  A K  ++D  V  ++L+G+GRAF +G DLT    
Sbjct: 9   GVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLT---- 64
Query: 78  VFKGDVKDVETDTVAQMER----------CRKPIIGAISGFAVTAGFEIALACDVLVAAK 127
               +  D + D  A + R            KP++ A++G A  AG  +AL  D+ +AA 
Sbjct: 65  ----EFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAV 120
Query: 128 GAKFIDTHARL 138
           GA F     R+
Sbjct: 121 GASFTTAFVRI 131

>pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 22  VTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG 81
           + + RP+  N+L   ++ ++ QA +    D S   I+L+G G AFC+G DL+   D F  
Sbjct: 34  IELQRPERRNALNSQLVEELTQAIRKAG-DGSARAIVLTGQGTAFCAGADLSG--DAFAA 90
Query: 82  DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
           D  D   +    M+    P++GAI+G A+ AG ++A+ CD+ V A  A F
Sbjct: 91  DYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFF 140

>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 14/145 (9%)
Query: 1   MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60
           M    S   + VT     + +V +NRP   N++ +    +M + F  + +D     +++S
Sbjct: 23  MAPDHSYESLRVTSAQKHVLHVQLNRPNKRNAMNKVFWREMVECFNKISRDADCRAVVIS 82
Query: 61  GSGRAFCSGVDLTS-AEDVF--KGD--------VKDVET---DTVAQMERCRKPIIGAIS 106
           G+G+ F +G+DL   A D+   KGD        ++D+ T   +T   +ERC KP+I A+ 
Sbjct: 83  GAGKMFTAGIDLMDMASDILQPKGDDVARISWYLRDIITRYQETFNVIERCPKPVIAAVH 142
Query: 107 GFAVTAGFEIALACDVLVAAKGAKF 131
           G  +  G ++  ACD+   A+ A F
Sbjct: 143 GGCIGGGVDLVTACDIRYCAQDAFF 167

>pdb|3Q1T|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Avium Length = 278

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG-----VDL 72
           G+  V ++ P  LNS+   M  D+A  +  +D+D +V  +++ G G+AF SG     +D 
Sbjct: 29  GVLTVVLDSP-GLNSVGPQMHRDLADIWPVIDRDPAVRAVLVRGEGKAFSSGGSFDLIDE 87
Query: 73  TSAEDVFKGDVKDVET--DTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAK 130
           T  +  ++G ++ +    D V  M  C  P++ AI G AV AG  +AL  D+ VA + AK
Sbjct: 88  TIGD--YQGRIRIMREARDLVHNMINCDTPVVSAIRGPAVGAGLVVALLADISVAGRTAK 145
Query: 131 FIDTHARL 138
            ID H +L
Sbjct: 146 LIDGHTKL 153

>pdb|3T88|A Chain A, Crystal Structure Of Escherichia Coli Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 289

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 6/127 (4%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAE 76
           GIA +TINRP+  N+     + +M QA      D+++ VIIL+G+G +AFCSG D     
Sbjct: 37  GIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRG 96
Query: 77  DV--FKGD--VKDVET-DTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
           D   +K D  V  +   D   Q+  C KP++  ++G+++  G  + + CD+ +AA  A F
Sbjct: 97  DYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIF 156
Query: 132 IDTHARL 138
             T  ++
Sbjct: 157 GQTGPKV 163

>pdb|4ELS|A Chain A, Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Coenzyme A Synthases (Menb) In Complex With Bicarbonate Length = 285

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 6/127 (4%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAE 76
           GIA +TINRP+  N+     + +M QA      D+++ VIIL+G+G +AFCSG D     
Sbjct: 33  GIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRG 92
Query: 77  DV--FKGD--VKDVET-DTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
           D   +K D  V  +   D   Q+  C KP++  ++G+++  G  + + CD+ +AA  A F
Sbjct: 93  DYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIF 152
Query: 132 IDTHARL 138
             T  ++
Sbjct: 153 GQTGPKV 159

>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 14/136 (10%)
Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           I VT     + +V +NRP+  N++ R+   ++ + F+ + KD     +++SG+G+ F SG
Sbjct: 5   IQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSG 64
Query: 70  VDLTS-AEDVFKGDVKDV-------------ETDTVAQMERCRKPIIGAISGFAVTAGFE 115
           +DL   A D+ +    DV                T   +E+C KP+I AI G  +  G +
Sbjct: 65  IDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVD 124
Query: 116 IALACDVLVAAKGAKF 131
           +  ACD+    + A F
Sbjct: 125 LISACDIRYCTQDAFF 140

>pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 3/110 (2%)
Query: 22  VTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG 81
           + ++RP+ LN++   M+ +++   +  + DESV  ++L+G+GRAFCSG DLT  +     
Sbjct: 19  IRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTAGAA 78
Query: 82  DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
           D  +     +  +    KP+I  + G AV  G  +ALACD++VAA  + F
Sbjct: 79  DAANRVVRAITSLP---KPVIAGVHGAAVGFGCSLALACDLVVAAPASYF 125

>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 69.7 bits (169), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED 77
           G+A +T++ P + NS T  +   +  A++ LD D +V VI+L+G+  AFCSG  +++A +
Sbjct: 16  GVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAE 75
Query: 78  VFKGDVKDVETDTVAQME--RCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
            F        + +  Q      R P+I A++G A+  G  +AL  D+ + A+  ++
Sbjct: 76  TFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRY 131

>pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Query: 19  IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTS-AED 77
           +A++T+NRP  LN+ T  M A++ +A K    D +V  ++++G+GRAFC+G DL+   E+
Sbjct: 13  VAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEE 72
Query: 78  VFKGDV-KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
           +  GDV +      +  +    KP++ A++G A  AG  +ALACD  + ++ A F
Sbjct: 73  MDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASF 127

>pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From Mycobacterium Marinum In Complex With An Unknown Ligand Length = 272

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG-----VDL 72
           G+  + ++ P  LNS+   M  D+A  +  +D+D  V V+++ G G+AF SG     +D 
Sbjct: 23  GVLNLVLDSP-GLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDE 81
Query: 73  TSAEDVFKGDVKDVET--DTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAK 130
           T  +  ++G ++ +    D V  +    KP++ AI G AV AG  +AL  D+ VA+  AK
Sbjct: 82  TIGD--YEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAK 139
Query: 131 FIDTHARL 138
            ID H +L
Sbjct: 140 IIDGHTKL 147

>pdb|3RRV|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 276

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 7/123 (5%)
Query: 22  VTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVD------LTSA 75
           +T+NRP SLNS+   +   +A+ ++ L  D +    +++G+GRAF +G D      L++ 
Sbjct: 41  ITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSAD 100
Query: 76  EDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTH 135
            D+    ++D   + V  M RCR P++ A++G AV  G  +    D++  A+ A   D H
Sbjct: 101 ADLRAKTIRD-GREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPH 159
Query: 136 ARL 138
            ++
Sbjct: 160 VQV 162

>pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 15/131 (11%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGR-AFCSGVDLTSAE 76
           GIA VTINRP+  N+ T   +A+M  AF     D++V VI+L+G G  AFCSG D     
Sbjct: 22  GIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKK-- 79
Query: 77  DVFKGDVKDVETDTVAQ-----MERC----RKPIIGAISGFAVTAGFEIALACDVLVAAK 127
              +G    V  D + +     ++R      KP+I  + G+AV  G  + + CD+ +AA 
Sbjct: 80  ---RGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAAD 136
Query: 128 GAKFIDTHARL 138
            A F  T  ++
Sbjct: 137 NAIFGQTGPKV 147

>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 9/142 (6%)
Query: 3   QTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62
           Q   E++I  T +  GIA +TINRP+  N+     + +M  AF     D ++ VIIL+G+
Sbjct: 8   QYDYEDIIYETYN--GIAKITINRPEVHNAFRPKTVNEMIDAFTKARDDSNIGVIILTGA 65
Query: 63  -GRAFCSGVDL-TSAEDVFKGDVKDVETDTVAQMERC----RKPIIGAISGFAVTAGFEI 116
            G+AFCSG D        + G+  ++    V  ++R      KP+I  ++G+A+  G  +
Sbjct: 66  GGKAFCSGGDQKVRGHGGYVGE-DEIPRLNVLDLQRLIRVIPKPVIAMVAGYAIGGGHVL 124
Query: 117 ALACDVLVAAKGAKFIDTHARL 138
            + CD+ +AA  A F  T  ++
Sbjct: 125 HVVCDLTIAADNAIFGQTGPKV 146

>pdb|3H02|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of Naphthoate Synthase From Salmonella Typhimurium. Length = 288

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 16/132 (12%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAE 76
           GIA +TINRP+  N+     + +  QA      D++V VIIL+G G +AFC+G D     
Sbjct: 36  GIAKITINRPQVRNAFRPLTVKEXIQALADARYDDNVGVIILTGEGDKAFCAGGDQK--- 92
Query: 77  DVFKGDVKDVETDT----------VAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAA 126
              +GD    + D+            Q+  C KP++  ++G+++  G  +   CD+ +AA
Sbjct: 93  --VRGDYGGYQDDSGVHHLNVLDFQRQIRTCPKPVVAXVAGYSIGGGHVLHXXCDLTIAA 150
Query: 127 KGAKFIDTHARL 138
           + A F  T  ++
Sbjct: 151 ENAIFGQTGPKV 162

>pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 74/128 (57%), Gaps = 7/128 (5%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED 77
           G+  +T+NRP+ LNS    M A +A+  K +++D+++  ++L+G+GR FC+G DL     
Sbjct: 24  GVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNV 83
Query: 78  VFKGDVKDV-------ETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAK 130
              G   D+           V ++ +  KP+I A++G A  AG  +AL  D+++AA+ AK
Sbjct: 84  DPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAK 143
Query: 131 FIDTHARL 138
           F+   ++L
Sbjct: 144 FVMAFSKL 151

>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265

Iteration: 1
 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 5/134 (3%)
Query: 2   GQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61
           G   +   +LV RD   +  +T+NRP   N+L+ +M++  A A+  +D D+ +   IL+G
Sbjct: 3   GSMSAARELLVERD-GPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTG 61
Query: 62  SGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQ----MERCRKPIIGAISGFAVTAGFEIA 117
           +G A+C G DL+    V  G    ++  T+ +         KP+I A++G  +  G E+ 
Sbjct: 62  AGSAYCVGGDLSDGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEML 121
Query: 118 LACDVLVAAKGAKF 131
              D+ V+ + A F
Sbjct: 122 QQTDIRVSDEHATF 135

>pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 19  IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSA-ED 77
           +A +T+N P + N+L+ ++++ + Q  +    D +V V++L+ +G  FC+G DL+ A   
Sbjct: 21  VARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSG 80
Query: 78  VFKGDVKDVETDTVAQME-------RCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAK 130
                  D+  +   +M          R P+I AI G     GF +  ACD+ VA   + 
Sbjct: 81  GSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSS 140
Query: 131 FIDTHARL 138
           F  T AR+
Sbjct: 141 FALTEARI 148

>pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From Mycobacterium Marinum Length = 298

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 11/133 (8%)
Query: 1   MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60
           M    +++ +L    P G+A +T NR   LN+    + A    A    + D  + VI+L+
Sbjct: 22  MSAADAQDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLT 81
Query: 61  GSGRAFCSGVDLTSAE-----DVFKGDVKDVE-TDTVAQ-----MERCRKPIIGAISGFA 109
           G GR FC+G  L SA+     D      KD    D V +     +   RKP+I AI+G  
Sbjct: 82  GRGRGFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPC 141
Query: 110 VTAGFEIALACDV 122
           V  G   AL CDV
Sbjct: 142 VGIGLTQALMCDV 154

>pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLT---- 73
           GIA+V +NRP+  N+++ ++  +M    ++L++D +  V++L+G+G A+ +G+DL     
Sbjct: 18  GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFR 77
Query: 74  ---SAEDVFKGDVKDVETDTVAQMERCR-KPIIGAISGFAVTAGFEIALACDVLVAAKGA 129
              +  ++ +  ++   +    ++ R   KP I  ++G+    GF   +ACD+ + A  A
Sbjct: 78  EVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEA 137
Query: 130 KF 131
            F
Sbjct: 138 TF 139

>pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLT---- 73
           GIA+V +NRP+  N+++ ++  +M    ++L++D +  V++L+G+G A+ +G+DL     
Sbjct: 18  GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFR 77
Query: 74  ---SAEDVFKGDVKDVETDTVAQMERCR-KPIIGAISGFAVTAGFEIALACDVLVAAKGA 129
              +  ++ +  ++   +    ++ R   KP I  ++G+    GF   +ACD+ + A  A
Sbjct: 78  EVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEA 137
Query: 130 KF 131
            F
Sbjct: 138 TF 139

>pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLT---- 73
           GIA+V +NRP+  N+++ ++  +M    ++L++D +  V++L+G+G A+ +G+DL     
Sbjct: 18  GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFR 77
Query: 74  ---SAEDVFKGDVKDVETDTVAQMERCR-KPIIGAISGFAVTAGFEIALACDVLVAAKGA 129
              +  ++ +  ++   +    ++ R   KP I  ++G+    GF   +ACD+ + A  A
Sbjct: 78  EVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEA 137
Query: 130 KF 131
            F
Sbjct: 138 TF 139

>pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLT---- 73
           GIA+V +NRP+  N+++ ++  +M    ++L++D +  V++L+G+G A+ +G+DL     
Sbjct: 18  GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFR 77
Query: 74  ---SAEDVFKGDVKDVETDTVAQMERCR-KPIIGAISGFAVTAGFEIALACDVLVAAKGA 129
              +  ++ +  ++   +    ++ R   KP I  ++G+    GF   +ACD+ + A  A
Sbjct: 78  EVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEA 137
Query: 130 KF 131
            F
Sbjct: 138 TF 139

>pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLT---- 73
           GIA+V +NRP+  N+++ ++  +M    ++L++D +  V++L+G+G A+ +G+DL     
Sbjct: 18  GIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFR 77
Query: 74  ---SAEDVFKGDVKDVETDTVAQMERCR-KPIIGAISGFAVTAGFEIALACDVLVAAKGA 129
              +  ++ +  ++   +    ++ R   KP I  ++G+    GF   +ACD+ + A  A
Sbjct: 78  EVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEA 137
Query: 130 KF 131
            F
Sbjct: 138 TF 139

>pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLT---- 73
           GIA+V +NRP+  N+++ ++  +M    ++L++D +  V++L+G+G A+ +G+DL     
Sbjct: 18  GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFR 77
Query: 74  ---SAEDVFKGDVKDVETDTVAQMERCR-KPIIGAISGFAVTAGFEIALACDVLVAAKGA 129
              +  ++ +  ++   +    ++ R   KP I  ++G+    GF   +ACD+ + A  A
Sbjct: 78  EVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADEA 137
Query: 130 KF 131
            F
Sbjct: 138 TF 139

>pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLT---- 73
           GIA+V +NRP+  N+++ ++  +M    ++L++D +  V++L+G+G A+ +G+DL     
Sbjct: 18  GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFR 77
Query: 74  ---SAEDVFKGDVKDVETDTVAQMERCR-KPIIGAISGFAVTAGFEIALACDVLVAAKGA 129
              +  ++ +  ++   +    ++ R   KP I  ++G+    GF   +ACD+ + A  A
Sbjct: 78  EVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADEA 137
Query: 130 KF 131
            F
Sbjct: 138 TF 139

>pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLT---- 73
           GIA+V +NRP+  N+++ ++  +M    ++L++D +  V++L+G+G A+ +G+DL     
Sbjct: 18  GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFR 77
Query: 74  ---SAEDVFKGDVKDVETDTVAQMERCR-KPIIGAISGFAVTAGFEIALACDVLVAAKGA 129
              +  ++ +  ++   +    ++ R   KP I  ++G+    GF   +ACD+ + A  A
Sbjct: 78  EVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADEA 137
Query: 130 KF 131
            F
Sbjct: 138 TF 139

>pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLT---- 73
           GIA+V +NRP+  N+++ ++  +M    ++L++D +  V++L+G+G A+ +G+DL     
Sbjct: 18  GIAFVILNRPERRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFR 77
Query: 74  ---SAEDVFKGDVKDVETDTVAQMERCR-KPIIGAISGFAVTAGFEIALACDVLVAAKGA 129
              +  ++ +  ++   +    ++ R   KP I  ++G+    GF   +ACD+ + A  A
Sbjct: 78  EVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFAPLVACDLAICADEA 137
Query: 130 KF 131
            F
Sbjct: 138 TF 139

>pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 8/123 (6%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAE- 76
           G+A +TI  P+  N+L+   M ++  A    ++D+SV  ++++G+  AFC+G  L     
Sbjct: 12  GVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPL 71
Query: 77  DVFKGDVKD-------VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGA 129
           D     V+D            + ++ R ++P++ AI+G A   G  I+LA D+ + A  A
Sbjct: 72  DKGVAGVRDHFRIAALWWQQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSA 131
Query: 130 KFI 132
           KF+
Sbjct: 132 KFV 134

>pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 8/123 (6%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAE- 76
           G+A +TI  P+  N+L+   M ++  A    ++D+SV  ++++G+  AFC+G  L     
Sbjct: 12  GVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPL 71
Query: 77  DVFKGDVKD-------VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGA 129
           D     V+D            + ++ R ++P++ AI+G A   G  I+LA D+ + A  A
Sbjct: 72  DKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSA 131
Query: 130 KFI 132
           KF+
Sbjct: 132 KFV 134

>pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 8/123 (6%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAE- 76
           G+A +TI  P+  N+L+   M ++  A    ++D+SV  ++++G+  AFC+G  L     
Sbjct: 12  GVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPL 71
Query: 77  DVFKGDVKD-------VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGA 129
           D     V+D            + ++ R ++P++ AI+G A   G  I+LA D+ + A  A
Sbjct: 72  DKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSA 131
Query: 130 KFI 132
           KF+
Sbjct: 132 KFV 134

>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 69/115 (60%), Gaps = 6/115 (5%)
Query: 22  VTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTS----AE 76
           +++NR +  NSL+ +++ ++      ++++ +  V+IL+G+G +AFC+G DL       E
Sbjct: 22  ISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGXNE 81
Query: 77  DVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
           +  +  V  + T T   +E+  +P+I AI+G A+  G E++LACD  +AA+ A  
Sbjct: 82  EQVRHAVSXIRT-TXEXVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASL 135

>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 5/117 (4%)
Query: 19  IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDV 78
           IA  T+N   + N+ +  +  D+ +    ++KD+++ V+++ G GR F +G D+     V
Sbjct: 16  IAVATLNHAPA-NAXSSQVXHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSV 74
Query: 79  FKG----DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
            +     ++  +   T  ++E+C KP+I AI G A+  G E A +C    A + AK 
Sbjct: 75  TEAKQATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAXSCHXRFATESAKL 131

>pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 5/114 (4%)
Query: 22  VTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTS---AED 77
           +TINRP++ N++  ++   +  A +    D  V  ++L+G+G ++FC+G DL +    E+
Sbjct: 22  ITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARREN 81
Query: 78  VFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
           ++  D  +       +     KP I A++G A+  G E+ALA D++VA + A+F
Sbjct: 82  LYHPDHPEWGFAGYVR-HFIDKPTIAAVNGTALGGGTELALASDLVVADERAQF 134

>pdb|3L3S|A Chain A, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE FAMILY Protein From Silicibacter Pomeroyi Length = 263

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDL----- 72
           G+  +T+ R  + + L+R+ +A +  A +    D+ V V+++ G GR FC+G DL     
Sbjct: 16  GVLTLTLGRAPA-HPLSRAXIAALHDALRRAXGDDHVHVLVIHGPGRIFCAGHDLKEIGR 74
Query: 73  ----TSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG 128
                     F  D+ +  +     +  C KP I  + G A  AG ++  ACD+  A+  
Sbjct: 75  HRADPDEGRAFVTDLFEACSALXLDLAHCPKPTIALVEGIATAAGLQLXAACDLAYASPA 134
Query: 129 AKF 131
           A+F
Sbjct: 135 ARF 137

>pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 65/114 (57%), Gaps = 5/114 (4%)
Query: 22  VTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTS---AED 77
           +TINRP++ N++  ++   +  A +    D  V  ++L+G+G ++FC+G DL +    E+
Sbjct: 22  ITINRPEARNAVNAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARREN 81
Query: 78  VFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
           ++  D  +       +     KP I A++G A+  G E+ALA D++VA + A+F
Sbjct: 82  LYHPDHPEWGFAGYVR-HFIDKPTIAAVNGTALGGGTELALASDLVVADERAQF 134

>pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 72/137 (52%), Gaps = 13/137 (9%)
Query: 6   SENLILVTRDPM------GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIIL 59
           +E L  VTR          +A +TI+RP + N++  ++   +  A +   +D  V  +++
Sbjct: 6   AETLTEVTRQAAVVERRGNVALITIDRPDARNAVNGAVSTAVGDALEEAQRDPEVWAVVI 65
Query: 60  SGSG-RAFCSGVDL---TSAEDVFKGDVKDVETDTVAQMER-CRKPIIGAISGFAVTAGF 114
           +G+G ++FC+G DL   +  E+++  +    E      +     KP I A++G A+  G 
Sbjct: 66  TGAGDKSFCAGADLKAISRGENLYHAE--HPEWGFAGYVHHFIDKPTIAAVNGTALGGGS 123
Query: 115 EIALACDVLVAAKGAKF 131
           E+ALA D+++A + A F
Sbjct: 124 ELALASDLVIACESASF 140

>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 19  IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDV 78
           +A V +N P+  N L+      + QA   L+ D  V  ++L+G G+AF +G DL   E V
Sbjct: 9   VAVVFLNDPERRNPLSPEXALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERV 68
Query: 79  FKGDVKDVETDTVA------QMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFI 132
            +   ++    +++      ++    KP + A++G AV  G  +ALACD++V  + A+  
Sbjct: 69  TELGAEENYRHSLSLXRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVXDEEARLG 128
Query: 133 DTHARL 138
            T  ++
Sbjct: 129 YTEVKI 134

>pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 262

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 19  IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDV 78
           +  V +NRP + N++     A +  AF   D D    V +L G    FC+G DL  A   
Sbjct: 21  VTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADL-KAMGT 79
Query: 79  FKGDVKDVETDTVAQMERCR--KPIIGAISGFAVTAGFEIALACDVLV 124
            +G+             R R  KP+I AISG AV  G E+AL CD+ V
Sbjct: 80  DRGNELHPHGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRV 127

>pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 22  VTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG 81
           + +NRP   N+  ++M+ ++A A    + D  +   +L G G  F +G+DL S     +G
Sbjct: 22  IGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQG 81
Query: 82  DVKDVETDTVAQME----RCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
                    +   +    +  KP++ A+ G  +T G E+ALA D+++A + A F
Sbjct: 82  GASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATF 135

>pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 16/127 (12%)
Query: 19  IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDV 78
           IA +T+NRP++ N+    ++ ++  A+    +D  V VIIL  +G+ F +G DL    +V
Sbjct: 33  IATITLNRPEAANAQNPELLDELDAAWTRAAEDNEVKVIILRANGKHFSAGHDLRGGGEV 92
Query: 79  FKGDVKDVETDTVAQME---------RCR---KPIIGAISGFAVTAGFEIALACDVLVAA 126
                + +  + + Q E         R R   KP I A+ G  ++ G  +   CD+++A+
Sbjct: 93  ----PEKISLEFIIQHEARRYLDYTLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLILAS 148
Query: 127 KGAKFID 133
             A F D
Sbjct: 149 DDALFSD 155

>pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAE 76
           G+  +T+NRPK++NSLT  M+  MA+   + + D+SV  ++L+G+G R  C+G D+ +  
Sbjct: 18  GVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIY 77
Query: 77  DVFKGDVKDV------ETDTVAQMERCRKPII 102
              K D  +       E    A + R  KP +
Sbjct: 78  HSAKADGAEARRFWFDEYRLNAHIGRYPKPYV 109

>pdb|3T3W|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycobacterium Thermoresistibile Length = 279

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 64/128 (50%), Gaps = 18/128 (14%)
Query: 19  IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDV 78
           IA +T+NRP++ N+    ++ ++  A+    +D  V VI+L  +G+ F +G DL      
Sbjct: 30  IATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGG--- 86
Query: 79  FKGDVKDVET-------DTVAQME---RCR---KPIIGAISGFAVTAGFEIALACDVLVA 125
             G V D  T       ++   +E   R R   KP I A+ G  ++ G  +   CD+++A
Sbjct: 87  --GPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIA 144
Query: 126 AKGAKFID 133
           A+ A F D
Sbjct: 145 AEDALFSD 152

>pdb|2F6Q|A Chain A, The Crystal Structure Of Human Peroxisomal Delta3, Delta2 Enoyl Coa Isomerase (Peci) Length = 280

Iteration: 1
 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 10/139 (7%)
Query: 7   ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAF 66
           E L++ + D  GI  +  NRPK  N++      ++ +A K+  KD+S+ + +L+G+G  +
Sbjct: 26  ETLVVTSED--GITKIXFNRPKKKNAINTEXYHEIXRALKAASKDDSI-ITVLTGNGDYY 82
Query: 67  CSGVDLTSAEDVFKGDVKDVETDTVAQMER-------CRKPIIGAISGFAVTAGFEIALA 119
            SG DLT+  D+  G V++   +    +           KP+I  ++G AV     +   
Sbjct: 83  SSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGL 142
Query: 120 CDVLVAAKGAKFIDTHARL 138
            D + A+  A F    + L
Sbjct: 143 FDAVYASDRATFHTPFSHL 161

>pdb|3NJB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis, Iodide Soak Length = 333

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 33/145 (22%)
Query: 19  IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDV 78
           +A +T NRP+  N++      +++   +  D D  V VI++SG G  FC+G DL++  + 
Sbjct: 45  VARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEG 104
Query: 79  ---------FKGDVKDVETDTV------------------------AQMERCRKPIIGAI 105
                    ++G V   +T  +                        A +  C KP +  I
Sbjct: 105 SSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKI 164
Query: 106 SGFAVTAGFEIALACDVLVAAKGAK 130
            G+ V  G +IAL  D ++AA  AK
Sbjct: 165 HGYCVAGGTDIALHADQVIAAADAK 189

>pdb|4EML|A Chain A, Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoyl-Coenzyme A Synthase (Menb) In Complex With Bicarbonate Length = 275

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 10/131 (7%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG------RAFCSGVD 71
           GIA + INRP   N+     + ++  AF +  +D  + V++L+G+G       AFCSG D
Sbjct: 19  GIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGD 78
Query: 72  LTSAEDVFKGDVKDVETDTVAQMERC----RKPIIGAISGFAVTAGFEIALACDVLVAAK 127
            +   +    D +      V  ++R      K +I  ++G+A+  G  + L CD+ +AA 
Sbjct: 79  QSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAAD 138
Query: 128 GAKFIDTHARL 138
            A F  T  ++
Sbjct: 139 NAIFGQTGPKV 149

>pdb|2A7K|A Chain A, Carboxymethylproline Synthase (carb) From Pectobacterium Carotovora, Apo Enzyme Length = 250

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 22  VTINRPKSLNSLTRSMMADMAQAFKSLDKDESV-LVIILSGSGRAFCSGVDLTSAEDVFK 80
           +T++ P   N  +R++   +  A    + D+SV  V++  G+ R+F +G D    + + +
Sbjct: 13  ITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSR 72
Query: 81  GDVKDVETDTVAQMERC----RKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFI 132
            +  +   D V  + +      KP I A+ G+A+  GF+ AL  D  + A  A F+
Sbjct: 73  SEDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFV 128

>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 11/126 (8%)
Query: 22  VTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAE----D 77
           +T+NRP++LN+   ++    AQA      D  V V++L+GSGR F +G DL   +    D
Sbjct: 19  LTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITD 78
Query: 78  VFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHAR 137
               + K      +  +    KP+I A++G  V  G  I    D+        F+ + AR
Sbjct: 79  PNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADL-------AFMSSTAR 131
Query: 138 LVCKIS 143
           L C  +
Sbjct: 132 LKCPFT 137

>pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Acinetobacter Baumannii Length = 266

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED 77
           G+  + INRP++ N+L   +   +A+A    D+++ V V++L G+   F +G D+     
Sbjct: 14  GVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKD--- 70
Query: 78  VFKGDVKDVETDTVAQME---------RCRKPIIGAISGFAVTAGFEIALACDVLVAAKG 128
            F G V++       Q+          R  KP+I A+ G A+  G  I L  D++ A   
Sbjct: 71  -FMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNT 129
Query: 129 AKF 131
           A F
Sbjct: 130 ALF 132

>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Halodurans Length = 263

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 21  YVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA-FCSGVDL------- 72
           Y+T++ P+  N L   +   + +A ++ + + S+  IIL    RA F SG  L       
Sbjct: 16  YITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICA 75
Query: 73  TSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFI 132
           +   DV   +V  V    V ++    K  +  I+G+A   GF + LACD  +A + AKF+
Sbjct: 76  SDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFL 135
Query: 133 DTHARL 138
           +   ++
Sbjct: 136 ENFHKM 141

>pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 22  VTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTS--AEDVF 79
           + +NRPK  N+L   +MA +       D  + +  +++ G G  F +G+DL+     D  
Sbjct: 29  IGLNRPKKRNALNDGLMAALKDCLT--DIPDQIRAVVIHGIGDHFSAGLDLSELRERDAT 86
Query: 80  KGDVKDVETDTV-AQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
           +G V       V  +++ CR P+I A+ G  +  G E+A A  + VA   A +
Sbjct: 87  EGLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYY 139

>pdb|3G64|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Streptomyces Coelicolor A3(2) Length = 279

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 18 GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDL 72
          G+A VT+ RP  LN+LT    AD+      L +  +V  ++L+G GR FCSG D+
Sbjct: 26 GVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDV 80

>pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 9/129 (6%)
Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKD-ESVLVIILSGSGR 64
           +E ++L  +   G+  +T+NRPK LN+LT + +  +    K  ++D E+ L+II    G+
Sbjct: 5   AEEVLLGKKGCTGV--ITLNRPKFLNALTLNXIRQIYPQLKKWEQDPETFLIIIKGAGGK 62
Query: 65  AFCSGVDLTSAEDVFKGDVK------DVETDTVAQMERCRKPIIGAISGFAVTAGFEIAL 118
           AFC+G D+    +  K   K        E      +  C+KP +  I G     G  +++
Sbjct: 63  AFCAGGDIRVISEAEKAKQKIAPVFFREEYXLNNAVGSCQKPYVALIHGITXGGGVGLSV 122
Query: 119 ACDVLVAAK 127
                VA +
Sbjct: 123 HGQFRVATE 131

>pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 2   GQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVL-VIILS 60
           G+ +SE      R   GI  + ++ PK  N+L+ +M+  + Q+    D D + L VII+S
Sbjct: 26  GRRESEPRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSL-QSDILHDADSNDLKVIIIS 84
Query: 61  GSGRAFCSGVDLTSAEDV----FKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEI 116
             G  F SG DL    +     +  +V    +  +  +     P+I  ++G A  AG ++
Sbjct: 85  AEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQL 144
Query: 117 ALACDVLVAAKGAKF 131
             +CD+ VA+  + F
Sbjct: 145 VASCDIAVASDKSSF 159

>pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From Mycobacterium Marinum Length = 277

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 10/120 (8%)
Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVD------ 71
           G+A + ++RP + N++TR +  ++  A   L + + +  ++L G    F +G D      
Sbjct: 33  GLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRT 91
Query: 72  LTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
           L + E      V+    D VA +    KP + A++G+A+ AG  +ALA D  V+    KF
Sbjct: 92  LNAPEADTAARVRLEAIDAVAAIP---KPTVAAVTGYALGAGLTLALAADWRVSGDNVKF 148

>pdb|1EF8|A Chain A, Crystal Structure Of Methylmalonyl Coa Decarboxylase Length = 261

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 7/118 (5%)
Query: 19  IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDL----T 73
           +A +  N  + LN+L++  + D+ QA   L++ E   +I+ + SG + F +G D+    +
Sbjct: 14  VAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPS 73
Query: 74  SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
              D    D  D        +++  KPII  + G      FE+ ++ D+++AA  + F
Sbjct: 74  GGRDPLSYD--DPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTF 129

>pdb|2J5G|D Chain D, The Native Structure Of A Beta-Diketone Hydrolase From The Cyanobacterium Anabaena Sp. Pcc 7120 Length = 263

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 4   TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG 63
           TK ENL    RD  GI  V ++   S    T     +   AF  + +D    V+IL+GSG
Sbjct: 20  TKYENLHF-HRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSG 78
Query: 64  RAFCSGVDLTSAEDVF---KGDVKDVETDTVAQ-MERCRKPIIGAISGFAVTAGFEIALA 119
            A+ + +D  S  DV    + D    E   V Q +     P+I A++G A+    E  L 
Sbjct: 79  DAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAALLHS-EYILT 137
Query: 120 CDVLVAAKGAKFID 133
            D+++A++   F D
Sbjct: 138 TDIILASENTVFQD 151

>pdb|2J5G|A Chain A, The Native Structure Of A Beta-Diketone Hydrolase From The Cyanobacterium Anabaena Sp. Pcc 7120 Length = 263

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 4   TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG 63
           TK ENL    RD  GI  V ++   S    T     +   AF  + +D    V+IL+GSG
Sbjct: 20  TKYENLHF-HRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSG 78
Query: 64  RAFCSGVDLTSAEDVF---KGDVKDVETDTVAQ-MERCRKPIIGAISGFAVTAGFEIALA 119
            A+ + +D  S  DV    + D    E   V Q +     P+I A++G A+    E  L 
Sbjct: 79  DAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAALLHS-EYILT 137
Query: 120 CDVLVAAKGAKFID 133
            D+++A++   F D
Sbjct: 138 TDIILASENTVFQD 151

>pdb|1SZO|A Chain A, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase His122ala Mutant Bound To Its Natural Product (2s,4s)- Alpha-Campholinic Acid Length = 257

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 18/138 (13%)
Query: 5   KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGR 64
           K EN I + RD  G+  VT++        T +   ++A  F  +  D    V+IL+G+G 
Sbjct: 14  KYEN-IRLERD-GGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGP 71
Query: 65  AFCSGVDLTSA---------EDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFE 115
           +FC+ +D TS          E +F+G         +  +     P+I A++G  VT   E
Sbjct: 72  SFCNEIDFTSFNLGTPHDWDEIIFEGQ------RLLNNLLSIEVPVIAAVNG-PVTNAPE 124
Query: 116 IALACDVLVAAKGAKFID 133
           I +  D+++AA+ A F D
Sbjct: 125 IPVMSDIVLAAESATFQD 142

>pdb|1O8U|A Chain A, The 2 Angstrom Structure Of 6-oxo Camphor Hydrolase: New Structural Diversity In The Crotonase Superfamily Length = 257

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 18/138 (13%)
Query: 5   KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGR 64
           K EN I + RD  G+  VT++        T +   ++A  F  +  D    V+IL+G+G 
Sbjct: 14  KYEN-IRLERD-GGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGP 71
Query: 65  AFCSGVDLTSA---------EDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFE 115
           +FC+ +D TS          E +F+G         +  +     P+I A++G  VT   E
Sbjct: 72  SFCNEIDFTSFNLGTPHDWDEIIFEGQ------RLLNNLLSIEVPVIAAVNG-PVTNHPE 124
Query: 116 IALACDVLVAAKGAKFID 133
           I +  D+++AA+ A F D
Sbjct: 125 IPVMSDIVLAAESATFQD 142

>pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From Rhodobacter Sphaeroides 2.4.1 Length = 365

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 13/126 (10%)
Query: 3   QTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62
           Q+ S+ LI   R       +T++RP +LN+LT + + ++  A +    D  V ++++   
Sbjct: 21  QSXSDVLIRKVRR---AGRITLSRPAALNALTCAXVQEIDAALRGWIGDPEVELVVIDAE 77
Query: 63  G-RAFCSGVDLT-------SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGF 114
           G RAFC+G D+        + +  F  D   VE     ++    KPI+    GF  T G 
Sbjct: 78  GPRAFCAGGDIAELHGRGVAGDHAFGQDFWRVEYRXNDRIAAFPKPIVSLXQGF--TXGG 135
Query: 115 EIALAC 120
            + L C
Sbjct: 136 GVGLGC 141

>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 10/111 (9%)
Query: 28  KSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVE 87
           +S+N   R  + ++ QA  ++  D SV  +I+S     F  G D+T   + FK  + D E
Sbjct: 27  ESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFK--LPDAE 84
Query: 88  --------TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAK 130
                       +  E    P + AI+G A+  G E+ LA D  V A  AK
Sbjct: 85  LIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAK 135

>pdb|3LAO|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Pseudomonas Aeruginosa Pa01 Length = 258

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 12  VTRDPMGIAY-VTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGV 70
           VTR+  G  + + ++R    N+   + +AD+A A    ++ E     +L   G  F +G+
Sbjct: 14  VTREQRGHLFLIGLDRAGKRNAFDSAXLADLALAXGEYERSEESRCAVLFAHGEHFTAGL 73
Query: 71  DLTS-----AEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVA 125
           DL       A   F+     V+   V Q  R  KP++ A+ G   TAG E+ L  D+ VA
Sbjct: 74  DLXELAPKLAASGFRYPDGGVDPWGVVQPRRS-KPLVVAVQGTCWTAGIELXLNADIAVA 132
Query: 126 AKGAKF 131
           A+G +F
Sbjct: 133 ARGTRF 138

>pdb|2GTR|A Chain A, Human Chromodomain Y-Like Protein Length = 261

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 11  LVTRDPMGIAYVTINRPKSLN-SLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           +V R   G  ++ ++   S N SL   +M ++  A  +   D+S LV+ LS  G  FC G
Sbjct: 7   IVVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVL-LSAVGSVFCCG 65
Query: 70  VDLTSAEDVFKGDVKDVET-------DTVAQMERCRKPIIGAISGFAVTAGFEIALACDV 122
           +D          D K   T       + V    + +KPII A++G A+  G  I   CDV
Sbjct: 66  LDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDV 125
Query: 123 LVAAKGAKF 131
           + A + A F
Sbjct: 126 VWANEKAWF 134

>pdb|3I47|A Chain A, Crystal Structure Of Putative Enoyl Coa HydrataseISOMERASE (Crotonase) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 Length = 268

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 8/137 (5%)
Query: 8   NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFC 67
           +L+   +D +G+  +T+NR    N+    ++ +M     S   D +V VI+L  +G+ F 
Sbjct: 5   DLLYEIQDKVGL--LTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFS 62
Query: 68  SGVDLTSAEDVFKGDVKDVETDTVA------QMERCRKPIIGAISGFAVTAGFEIALACD 121
           +G DLT  + +     ++   D++        + +  KP I  + G A   G  +A ACD
Sbjct: 63  AGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACD 122
Query: 122 VLVAAKGAKFIDTHARL 138
           + +A+  A+F  +  +L
Sbjct: 123 IAIASTSARFCFSEVKL 139

>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 72/135 (53%), Gaps = 9/135 (6%)
Query: 3   QTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62
           +TK + ++ V  D  G+A +T+  P  +NSL+  ++ ++   ++       V  I+++G+
Sbjct: 4   RTKGKTVMEVGGD--GVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGA 60
Query: 63  GRAFCSGVDLTSAEDVFKGDVKDVETDTVA------QMERCRKPIIGAISGFAVTAGFEI 116
              F  G D++   ++ KG+VK+ +   ++       +E  RKP + AI G A+  G E+
Sbjct: 61  KGRFSGGFDISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLEL 120
Query: 117 ALACDVLVAAKGAKF 131
           A+AC   ++A  A+ 
Sbjct: 121 AMACHARISAPAAQL 135

>pdb|2FW2|A Chain A, Catalytic Domain Of Cdy Length = 260

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 8/129 (6%)
Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           I+V ++      V   R    N+L   ++ +M  A  S   D+S LV+  S +G  FC G
Sbjct: 6   IVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVL-FSAAGSVFCCG 64
Query: 70  VD-------LTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDV 122
           +D       L +  +    ++ D   + V    + +KPI+ +++G A+  G  I   CD+
Sbjct: 65  LDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDL 124
Query: 123 LVAAKGAKF 131
           + A + A F
Sbjct: 125 VWANEKAWF 133

>pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1 Length = 291

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 26  RPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVD-------LTSAEDV 78
           R    N+L   ++ ++  A  S   D+S LV+  S +G  FC G+D       L +  + 
Sbjct: 41  RSTEKNALNTEVIKEIVNALNSAAADDSKLVL-FSAAGSVFCCGLDFGYFVKHLRNNRNT 99
Query: 79  FKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
              ++ D   + V    + +KPI+ +++G A+  G  I   CD++ A + A F
Sbjct: 100 ASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWF 152

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	145
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	7e-44
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	2e-43
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	2e-43
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	2e-43
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	5e-43
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	5e-42
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	1e-41
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	2e-41
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	2e-41
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	7e-41
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	1e-40
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	1e-40
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	1e-40
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	2e-40
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	2e-40
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	2e-40
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	3e-40
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	3e-40
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	7e-40
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	7e-40
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	9e-40
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	9e-40
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	9e-40
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	1e-39
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	1e-39
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	2e-39
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	1e-38
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	1e-38
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	1e-38
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	2e-38
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	2e-38
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	2e-38
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	2e-38
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	5e-38
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	7e-38
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	7e-38
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	1e-37
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	1e-37
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	1e-37
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	1e-37
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	2e-37
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	3e-37
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	3e-37
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	4e-37
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	7e-37
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	2e-36
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	5e-36
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	6e-36
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	7e-36
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	2e-35
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	5e-35
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	6e-35
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	1e-34
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	2e-34
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	5e-34
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	1e-33
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	1e-33
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	1e-33
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	3e-33
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	4e-33
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	1e-32
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	2e-32
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	2e-32
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	2e-32
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	5e-32
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	7e-30
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	7e-26
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	3e-24
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	5e-24
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	1e-23
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	6e-23
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	3e-18
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	1e-17

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score =  144 bits (365), Expect = 7e-44
 Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 7/143 (4%)

Query: 1   MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60
           M       + +       +  +T+NRP SLNS+   +   +A+ ++ L  D +    +++
Sbjct: 22  MVYDMPTEIDVRADG--ALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVIT 79

Query: 61  GSGRAFCSGVDLT-----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFE 115
           G+GRAF +G D       SA+   +        + V  M RCR P++ A++G AV  G  
Sbjct: 80  GAGRAFSAGGDFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCS 139

Query: 116 IALACDVLVAAKGAKFIDTHARL 138
           +    D++  A+ A   D H ++
Sbjct: 140 LVALSDIVYIAENAYLADPHVQV 162

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score =  143 bits (362), Expect = 2e-43
 Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 6/134 (4%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           +       G+  + ++ P  LNS+   M  D+A  +  +D+D  V V+++ G G+AF SG
Sbjct: 15  LRFEPGEHGVLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSG 73

Query: 70  VDL-----TSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLV 124
                   T  +   +  +     D V  +    KP++ AI G AV AG  +AL  D+ V
Sbjct: 74  GSFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISV 133

Query: 125 AAKGAKFIDTHARL 138
           A+  AK ID H +L
Sbjct: 134 ASATAKIIDGHTKL 147

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score =  142 bits (361), Expect = 2e-43
 Identities = 49/137 (35%), Positives = 77/137 (56%), Gaps = 7/137 (5%)

Query: 2   GQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61
           G      ++LV      +  +T+NRP+S N+L+  + +   +A      D+ V V+I++G
Sbjct: 3   GSMADSPVLLVDTTD-RVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTG 61

Query: 62  SGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACD 121
           +   FC+G+DL    D  +        D   +     KP+IGAI+G AVT G E+AL CD
Sbjct: 62  ADPVFCAGLDLKELGDTTELP------DISPKWPDMTKPVIGAINGAAVTGGLELALYCD 115

Query: 122 VLVAAKGAKFIDTHARL 138
           +L+A++ AKF DTHAR+
Sbjct: 116 ILIASENAKFADTHARV 132

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score =  143 bits (363), Expect = 2e-43
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 10/142 (7%)

Query: 1   MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60
                S + +LV R    IA VT+NRP+ +N++   +M    Q    +  D  V  ++++
Sbjct: 16  TQGPGSMSFVLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVIT 75

Query: 61  GSGRAFCSGVDLTS----------AEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV 110
           G+G+ FCSG D  S           +        ++  + +  + R  +P+I AI+G A+
Sbjct: 76  GAGKGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAI 135

Query: 111 TAGFEIALACDVLVAAKGAKFI 132
             G  +ALACDV VA++ A F 
Sbjct: 136 GGGLCLALACDVRVASQDAYFR 157

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score =  142 bits (361), Expect = 5e-43
 Identities = 48/149 (32%), Positives = 66/149 (44%), Gaps = 11/149 (7%)

Query: 1   MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60
           M    +++ +L    P G+A +T NR   LN+    + A    A    + D  + VI+L+
Sbjct: 22  MSAADAQDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLT 81

Query: 61  GSGRAFCSGVDLTSAEDVFKGDVKDVETDT-----------VAQMERCRKPIIGAISGFA 109
           G GR FC+G  L SA+     D    +                 +   RKP+I AI+G  
Sbjct: 82  GRGRGFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPC 141

Query: 110 VTAGFEIALACDVLVAAKGAKFIDTHARL 138
           V  G   AL CDV  AA GAKF    AR 
Sbjct: 142 VGIGLTQALMCDVRFAAAGAKFAAVFARR 170

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score =  139 bits (352), Expect = 5e-42
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 6/134 (4%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           +       G+  +T  R + LN++  ++   +A+ ++ L+  E V  ++L G G  F +G
Sbjct: 12  LAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAG 70

Query: 70  VDLT-----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLV 124
                     A       V     D V       +P++ A+   AV AG  +ALA D+ V
Sbjct: 71  GSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAV 130

Query: 125 AAKGAKFIDTHARL 138
             KG + +D H RL
Sbjct: 131 VGKGTRLLDGHLRL 144

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score =  138 bits (349), Expect = 1e-41
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 3/131 (2%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           +       G+A +T++ P + NS T  +   +  A++ LD D +V VI+L+G+  AFCSG
Sbjct: 9   LHEEIRD-GVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSG 67

Query: 70  VDLTSAEDVFKGDVK--DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAK 127
             +++A + F          +         R P+I A++G A+  G  +AL  D+ + A+
Sbjct: 68  AQISAAAETFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAE 127

Query: 128 GAKFIDTHARL 138
             ++     R 
Sbjct: 128 EGRYAIPQVRF 138

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score =  137 bits (348), Expect = 2e-41
 Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 4/127 (3%)

Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
             ++I +T+    +  + + RP+  N+L   ++ ++ QA +    D S   I+L+G G A
Sbjct: 19  PGSMIGITQAE-AVLTIELQRPERRNALNSQLVEELTQAIRKAG-DGSARAIVLTGQGTA 76

Query: 66  FCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVA 125
           FC+G DL  + D F  D  D   +    M+    P++GAI+G A+ AG ++A+ CD+ V 
Sbjct: 77  FCAGADL--SGDAFAADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVV 134

Query: 126 AKGAKFI 132
           A  A F 
Sbjct: 135 APDAFFQ 141

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score =  137 bits (348), Expect = 2e-41
 Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 5/126 (3%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           + + RD   +  + +NRP   N+  ++M+ ++A A    + D  +   +L G G  F +G
Sbjct: 11  LRIRRDG-YVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAG 69

Query: 70  VDLTSAEDVFKGDVKDVETDTVAQM----ERCRKPIIGAISGFAVTAGFEIALACDVLVA 125
           +DL S     +G         +        +  KP++ A+ G  +T G E+ALA D+++A
Sbjct: 70  LDLASVAAEIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIA 129

Query: 126 AKGAKF 131
            + A F
Sbjct: 130 DETATF 135

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score =  136 bits (345), Expect = 7e-41
 Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 10/135 (7%)

Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
            E +     D  G+A +TI  P+  N+L+   M ++  A    ++D+SV  ++++G+  A
Sbjct: 2   YEAIGHRVED--GVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDA 59

Query: 66  FCSGVDLT-----SAEDVFKGDVKDVETD---TVAQMERCRKPIIGAISGFAVTAGFEIA 117
           FC+G  L            +   +         + ++ R ++P++ AI+G A   G  I+
Sbjct: 60  FCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGIS 119

Query: 118 LACDVLVAAKGAKFI 132
           LA D+ + A  AKF+
Sbjct: 120 LASDMAICADSAKFV 134

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score =  134 bits (341), Expect = 1e-40
 Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 3/130 (2%)

Query: 9   LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCS 68
           + L      G+  +T+    S N  + S++  +   F  + +++   V+IL+G G  F S
Sbjct: 4   VQLTELGN-GVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSS 62

Query: 69  GVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG 128
           G          +G+V+    D    +  C  PII A+ G +   G  + L  D +V ++ 
Sbjct: 63  GASKEFLIRKTRGEVEV--LDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQE 120

Query: 129 AKFIDTHARL 138
           + +     + 
Sbjct: 121 SVYATNFMKY 130

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score =  135 bits (341), Expect = 1e-40
 Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 4/133 (3%)

Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
           S N I V  D   +  + ++RP+ LN++   M+ +++   +  + DESV  ++L+G+GRA
Sbjct: 4   SMNGISVEHDG-AVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRA 62

Query: 66  FCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVA 125
           FCSG DLT  +        D     V  +    KP+I  + G AV  G  +ALACD++VA
Sbjct: 63  FCSGGDLTGGDT---AGAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVA 119

Query: 126 AKGAKFIDTHARL 138
           A  + F     R+
Sbjct: 120 APASYFQLAFTRV 132

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score =  135 bits (342), Expect = 1e-40
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 6/128 (4%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           +    +  G+  + INRP++ N+L   +   +A+A    D+++ V V++L G+   F +G
Sbjct: 7   LNANLEG-GVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAG 65

Query: 70  VDLT-----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLV 124
            D+                +      +    R  KP+I A+ G A+  G  I L  D++ 
Sbjct: 66  NDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVF 125

Query: 125 AAKGAKFI 132
           A   A F 
Sbjct: 126 ADNTALFQ 133

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score =  134 bits (341), Expect = 2e-40
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 7   ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAF 66
             L +   +   +  +T+NRP++LN+   ++    AQA      D  V V++L+GSGR F
Sbjct: 6   VTLQIDDDN--RVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGF 63

Query: 67  CSGVDLTSAEDVFKGDVKDVETDT----VAQMERCRKPIIGAISGFAVTAGFEIALACDV 122
            +G DL   +                  +  +    KP+I A++G  V  G  I    D+
Sbjct: 64  SAGTDLAEMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADL 123

Query: 123 LVAAKGAKFI 132
              +  A+  
Sbjct: 124 AFMSSTARLK 133

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score =  135 bits (342), Expect = 2e-40
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 5/134 (3%)

Query: 2   GQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61
           G   +   +LV RD   +  +T+NRP   N+L+ +M++  A A+  +D D+ +   IL+G
Sbjct: 3   GSMSAARELLVERDG-PVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTG 61

Query: 62  SGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQ----MERCRKPIIGAISGFAVTAGFEIA 117
           +G A+C G DL+    V  G    ++  T+ +         KP+I A++G  +  G E+ 
Sbjct: 62  AGSAYCVGGDLSDGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEML 121

Query: 118 LACDVLVAAKGAKF 131
              D+ V+ + A F
Sbjct: 122 QQTDIRVSDEHATF 135

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score =  135 bits (341), Expect = 2e-40
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 6/134 (4%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           +   RD  GI  V ++   S    T     +   AF  + +D    V+IL+GSG A+ + 
Sbjct: 25  LHFHRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAE 84

Query: 70  VDLTSAEDVFKGDVKDVET----DTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVA 125
           +D  S  DV      D         +  +     P+I A++G A+    E  L  D+++A
Sbjct: 85  IDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNGAALLHS-EYILTTDIILA 143

Query: 126 AKGAKFIDT-HARL 138
           ++   F D  H   
Sbjct: 144 SENTVFQDMPHLNA 157

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  134 bits (339), Expect = 3e-40
 Identities = 41/129 (31%), Positives = 73/129 (56%), Gaps = 4/129 (3%)

Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
            E +    +    +A++T+NRP  LN+ T  M A++ +A K    D +V  ++++G+GRA
Sbjct: 2   YETIRYEVKG--QVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRA 59

Query: 66  FCSGVDLTS-AEDVFKGD-VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVL 123
           FC+G DL+   E++  GD ++      +  +    KP++ A++G A  AG  +ALACD  
Sbjct: 60  FCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFR 119

Query: 124 VAAKGAKFI 132
           + ++ A F 
Sbjct: 120 LLSEKASFA 128

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score =  133 bits (338), Expect = 7e-40
 Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 8/136 (5%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           + V     G+A VT+ RP  LN+LT    AD+      L +  +V  ++L+G GR FCSG
Sbjct: 19  LRVEITD-GVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSG 77

Query: 70  VDLTS-AEDVFKGDVKDVET------DTVAQMERCRKPIIGAISGFAVTAGFEIALACDV 122
            D+          D   +          V  +  C  P+I A+ G A  AG  +ALA D 
Sbjct: 78  GDVDEIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADF 137

Query: 123 LVAAKGAKFIDTHARL 138
            VA    +F     R+
Sbjct: 138 RVADPSTRFAFLFTRV 153

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score =  134 bits (339), Expect = 7e-40
 Identities = 46/131 (35%), Positives = 79/131 (60%), Gaps = 6/131 (4%)

Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
           SE L+L  RD  G+  +T+NRP++ N+L+ +M+A + +AF +L +DESV  ++L+ SG+A
Sbjct: 23  SEPLLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKA 82

Query: 66  FCSGVDLT-----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALAC 120
           FC+G DL       + + ++       TD +  ++R   P+I  + G A  AG ++   C
Sbjct: 83  FCAGHDLKEMRAEPSREYYEKLF-ARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMC 141

Query: 121 DVLVAAKGAKF 131
           D+ VA + A+F
Sbjct: 142 DLAVATRDARF 152

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score =  133 bits (337), Expect = 9e-40
 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 9/135 (6%)

Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
           S + +          Y+T++ P+  N L   +   + +A ++ + + S+  IIL    RA
Sbjct: 2   SLSYVHTEIQN-DALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRA 60

Query: 66  -FCSGVDLT-------SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIA 117
            F SG  L           DV   +V  V    V ++    K  +  I+G+A   GF + 
Sbjct: 61  YFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMM 120

Query: 118 LACDVLVAAKGAKFI 132
           LACD  +A + AKF+
Sbjct: 121 LACDRRIALRRAKFL 135

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score =  133 bits (337), Expect = 9e-40
 Identities = 48/129 (37%), Positives = 75/129 (58%), Gaps = 5/129 (3%)

Query: 4   TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG 63
             +E  +LV +    I  +TINRPK+ NS+  ++   +A A   LD D  + V IL+G+G
Sbjct: 11  GDTEPEVLVEQRD-RILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAG 69

Query: 64  RAFCSGVDLTSAEDVFKGDVKDVETDTVAQMER-CRKPIIGAISGFAVTAGFEIALACDV 122
            +FC+G+DL +      G+   VE   +   ER   KP+I A+ G+A+  G E+ALA D+
Sbjct: 70  GSFCAGMDLKAFAR---GENVVVEGRGLGFTERPPAKPLIAAVEGYALAGGTELALATDL 126

Query: 123 LVAAKGAKF 131
           +VAA+ + F
Sbjct: 127 IVAARDSAF 135

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score =  133 bits (338), Expect = 9e-40
 Identities = 35/138 (25%), Positives = 68/138 (49%), Gaps = 11/138 (7%)

Query: 4   TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG 63
             S + I    D    A +T+NRP +LN+L+  M+ ++  A+   + D+ V +++++G+G
Sbjct: 7   VDSFDTIKYEVDG-HTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTG 65

Query: 64  RAFCSGVDLTSAEDVFKGDVK----------DVETDTVAQMERCRKPIIGAISGFAVTAG 113
           RAFCSG D+    +  K   +          +   +         KP++ A++G    AG
Sbjct: 66  RAFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAG 125

Query: 114 FEIALACDVLVAAKGAKF 131
            +     D+++A++ A F
Sbjct: 126 MDWVTTTDIVIASEQATF 143

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score =  133 bits (337), Expect = 1e-39
 Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 7/135 (5%)

Query: 3   QTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62
             +S    LV +       VT+NRP   N+L+  MM  M +A+  +D D  +   IL+G+
Sbjct: 15  NGESGPDALVEQRG-HTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGA 73

Query: 63  GRAFCSGVDL------TSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEI 116
           G  FC+G+DL         +    G       D + +  R +KP+I A+ G A+  G EI
Sbjct: 74  GGYFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEI 133

Query: 117 ALACDVLVAAKGAKF 131
               D+ VAA+ AKF
Sbjct: 134 LQGTDIRVAAESAKF 148

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score =  133 bits (336), Expect = 1e-39
 Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 5/126 (3%)

Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
           ++ +++  RD   +  +TINRP + N++ R++   +A A   LD    + V I++G+G  
Sbjct: 6   ADEVLIEQRD--RVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGN 63

Query: 66  FCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVA 125
           FC+G+DL +      G+    E          RKPII A+ GFA+  G E+ L+CD++VA
Sbjct: 64  FCAGMDLKAFVS---GEAVLSERGLGFTNVPPRKPIIAAVEGFALAGGTELVLSCDLVVA 120

Query: 126 AKGAKF 131
            + AKF
Sbjct: 121 GRSAKF 126

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score =  132 bits (334), Expect = 2e-39
 Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 5/133 (3%)

Query: 3   QTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62
                  +   +    +  + ++R    N+   +M+AD+A A    ++ E     +L   
Sbjct: 7   ANSGPGRVTREQRG-HLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAH 65

Query: 63  GRAFCSGVDLTSAEDVFKGDVKDVETDTVAQME----RCRKPIIGAISGFAVTAGFEIAL 118
           G  F +G+DL                  V        R  KP++ A+ G   TAG E+ L
Sbjct: 66  GEHFTAGLDLMELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELML 125

Query: 119 ACDVLVAAKGAKF 131
             D+ VAA+G +F
Sbjct: 126 NADIAVAARGTRF 138

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score =  131 bits (331), Expect = 1e-38
 Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 9/139 (6%)

Query: 3   QTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62
           + ++E  I        IA +T+NRP++ N+    ++ ++  A+    +D  V VI+L  +
Sbjct: 15  EQRTEMYIDYDVSD-RIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRAN 73

Query: 63  GRAFCSGVDLT--------SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGF 114
           G+ F +G DL            +           +   +     KP I A+ G  ++ G 
Sbjct: 74  GKHFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGL 133

Query: 115 EIALACDVLVAAKGAKFID 133
            +   CD+++AA+ A F D
Sbjct: 134 LLCWPCDLIIAAEDALFSD 152

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score =  130 bits (329), Expect = 1e-38
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 7/128 (5%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           ++       +A V +N P+  N L+  M   + QA   L+ D  V  ++L+G G+AF +G
Sbjct: 1   MVQVEKG-HVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAG 59

Query: 70  VDLTSAEDVFKGDVKDVETDTVA------QMERCRKPIIGAISGFAVTAGFEIALACDVL 123
            DL   E V +   ++    +++      ++    KP + A++G AV  G  +ALACD++
Sbjct: 60  ADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLV 119

Query: 124 VAAKGAKF 131
           V  + A+ 
Sbjct: 120 VMDEEARL 127

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score =  130 bits (329), Expect = 1e-38
 Identities = 34/140 (24%), Positives = 69/140 (49%), Gaps = 10/140 (7%)

Query: 1   MGQTKSE-NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIIL 59
           M   +     + V  +  GIA+V +NRP+  N+++ ++  +M    ++L++D +  V++L
Sbjct: 1   MSTYEGRWKTVKVEIED-GIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVL 59

Query: 60  SGSGRAFCSGVDLT--------SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVT 111
           +G+G A+ +G+DL           E + +   ++        +    KP I  ++G+   
Sbjct: 60  TGAGEAWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFG 119

Query: 112 AGFEIALACDVLVAAKGAKF 131
            GF   +ACD+ + A  A F
Sbjct: 120 GGFSPLVACDLAICADEATF 139

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score =  130 bits (330), Expect = 2e-38
 Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 6/135 (4%)

Query: 2   GQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61
           G+ +SE      R   GI  + ++ PK  N+L+ +M+  +            + VII+S 
Sbjct: 26  GRRESEPRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISA 85

Query: 62  SGRAFCSGVDLT-----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEI 116
            G  F SG DL         D          +  +  +     P+I  ++G A  AG ++
Sbjct: 86  EGPVFSSGHDLKELTEEQGRDYHAEVF-QTCSKVMMHIRNHPVPVIAMVNGLATAAGCQL 144

Query: 117 ALACDVLVAAKGAKF 131
             +CD+ VA+  + F
Sbjct: 145 VASCDIAVASDKSSF 159

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score =  130 bits (329), Expect = 2e-38
 Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 15/139 (10%)

Query: 7   ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAF 66
           E++ + +     + +V +NRP+  N++ R+   ++ + F+ + KD     +++SG+G+ F
Sbjct: 3   ESIQVTSAQK-HVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMF 61

Query: 67  CSGVDLTSAEDVFKGDVKDVET--------------DTVAQMERCRKPIIGAISGFAVTA 112
            SG+DL            D                  T   +E+C KP+I AI G  +  
Sbjct: 62  TSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGG 121

Query: 113 GFEIALACDVLVAAKGAKF 131
           G ++  ACD+    + A F
Sbjct: 122 GVDLISACDIRYCTQDAFF 140

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score =  130 bits (328), Expect = 2e-38
 Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 4   TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG 63
            + +  + V +    +  V +NRP + N++     A +  AF   D D    V +L G  
Sbjct: 7   EEMQPAVRVEKAG-PVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDN 65

Query: 64  RAFCSGVDLTSAEDVFKGDVKDVETDTVAQM----ERCRKPIIGAISGFAVTAGFEIALA 119
             FC+G DL +          ++       M     R  KP+I AISG AV  G E+AL 
Sbjct: 66  GTFCAGADLKAMGT---DRGNELHPHGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALW 122

Query: 120 CDVLVAAKGAKF 131
           CD+ V  + A  
Sbjct: 123 CDLRVVEEDAVL 134

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score =  130 bits (328), Expect = 2e-38
 Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 9/138 (6%)

Query: 2   GQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61
            Q+     ++VT +  GI  +  NRPK  N++   M  ++ +A K+  KD+S+ + +L+G
Sbjct: 20  FQSMGFETLVVTSED-GITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTG 77

Query: 62  SGRAFCSGVDLTSAEDVFKGDVKDVETDT-------VAQMERCRKPIIGAISGFAVTAGF 114
           +G  + SG DLT+  D+  G V++   +        V       KP+I  ++G AV    
Sbjct: 78  NGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISV 137

Query: 115 EIALACDVLVAAKGAKFI 132
            +    D + A+  A F 
Sbjct: 138 TLLGLFDAVYASDRATFH 155

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score =  128 bits (325), Expect = 5e-38
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 8/130 (6%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           I+V +       +   +    NSL   +M ++  A  +   D+S  +++LS  G  FC G
Sbjct: 7   IVVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDSK-LVLLSAVGSVFCCG 65

Query: 70  VDLTSAEDVFKGDVKDVET-------DTVAQMERCRKPIIGAISGFAVTAGFEIALACDV 122
           +D          D K   T       + V    + +KPII A++G A+  G  I   CDV
Sbjct: 66  LDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDV 125

Query: 123 LVAAKGAKFI 132
           + A + A F 
Sbjct: 126 VWANEKAWFQ 135

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score =  128 bits (325), Expect = 7e-38
 Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 11/130 (8%)

Query: 7   ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAF 66
           E +++       +  +T+NRP++LN+L   +M ++  A   LD D  +  II++GS +AF
Sbjct: 25  ETILVERDQ--RVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAF 82

Query: 67  CSGVDLT-----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACD 121
            +G D+      +  D F  D          ++   R P I A++G+A+  G E+A+ CD
Sbjct: 83  AAGADIKEMADLTFADAFTADFFAT----WGKLAAVRTPTIAAVAGYALGGGCELAMMCD 138

Query: 122 VLVAAKGAKF 131
           VL+AA  AKF
Sbjct: 139 VLIAADTAKF 148

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score =  128 bits (324), Expect = 7e-38
 Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 10/144 (6%)

Query: 4   TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG 63
           + S++ +L      G+  +T+ R  + + L+R+M+A +  A +    D+ V V+++ G G
Sbjct: 2   SLSQDGLLGEVLSEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPG 60

Query: 64  RAFCSGVDL---------TSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGF 114
           R FC+G DL               F  D+ +  +  +  +  C KP I  + G A  AG 
Sbjct: 61  RIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGL 120

Query: 115 EIALACDVLVAAKGAKFIDTHARL 138
           ++  ACD+  A+  A+F     + 
Sbjct: 121 QLMAACDLAYASPAARFCLPGVQN 144

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score =  127 bits (322), Expect = 1e-37
 Identities = 27/141 (19%), Positives = 56/141 (39%), Gaps = 6/141 (4%)

Query: 1   MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60
           M  + S  L +  R        T++RP+  N+L+  ++  +     +  +++ V +++ +
Sbjct: 1   MSLSASLPLAIERRP--AAWTFTLSRPEKRNALSAELVEALIDGVDAAHREQ-VPLLVFA 57

Query: 61  GSGRAFCSGVDLTSAEDVFKGDVKDVE---TDTVAQMERCRKPIIGAISGFAVTAGFEIA 117
           G+GR F +G D T  E   +GD+          + ++       +    G    AG ++ 
Sbjct: 58  GAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLF 117

Query: 118 LACDVLVAAKGAKFIDTHARL 138
            AC        A F     + 
Sbjct: 118 AACKWRYCTPEAGFRMPGLKF 138

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score =  128 bits (323), Expect = 1e-37
 Identities = 39/127 (30%), Positives = 72/127 (56%), Gaps = 10/127 (7%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           I   ++   +  + + RP  LN+L+R M+A++  A ++ D++E V VI+L+G GRAF +G
Sbjct: 7   IAARQEG-AVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAG 65

Query: 70  VDLT-----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLV 124
            D+          +   +          ++   + P+I A++G A+  GFE+AL+CD++V
Sbjct: 66  ADIQEMAKDDPIRLEWLNQFADWD----RLSIVKTPMIAAVNGLALGGGFELALSCDLIV 121

Query: 125 AAKGAKF 131
           A+  A+F
Sbjct: 122 ASSAAEF 128

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score =  127 bits (322), Expect = 1e-37
 Identities = 36/131 (27%), Positives = 74/131 (56%), Gaps = 10/131 (7%)

Query: 7   ENLILVTRDPM-GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
           + +I   +     +  + +NRPK+LN+L   ++ ++ QA ++ ++D +V  I+L+G  +A
Sbjct: 4   QYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKA 63

Query: 66  FCSGVDLT-----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALAC 120
           F +G D+      + +D + G            + R +KP+I A++G+A+  G E+A+ C
Sbjct: 64  FAAGADIKEMQNRTFQDCYSGKFLSH----WDHITRIKKPVIAAVNGYALGGGCELAMMC 119

Query: 121 DVLVAAKGAKF 131
           D++ A + A+F
Sbjct: 120 DIIYAGEKAQF 130

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score =  127 bits (322), Expect = 1e-37
 Identities = 37/136 (27%), Positives = 74/136 (54%), Gaps = 9/136 (6%)

Query: 1   MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60
            G   +   I  +R   G+  + ++RP +LN+L +++ A++  A +  D D  +  I+++
Sbjct: 2   PGSMTTYTTIATSRPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVT 61

Query: 61  GSGRAFCSGVDLT-----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFE 115
           GS RAF +G D+      +     + ++          + + RKPI+ A++G+A+  G E
Sbjct: 62  GSERAFAAGADIAEMVTLTPHQARERNLLSG----WDSLTQVRKPIVAAVAGYALGGGCE 117

Query: 116 IALACDVLVAAKGAKF 131
           +A+ CD+++AA  A+F
Sbjct: 118 LAMLCDLVIAADTARF 133

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score =  129 bits (325), Expect = 2e-37
 Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 34/162 (20%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           +        +A +T NRP+  N++      +++   +  D D  V VI++SG G  FC+G
Sbjct: 37  MTYEVTD-RVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAG 95

Query: 70  VDLTSAED---------------------------------VFKGDVKDVETDTVAQMER 96
            DL++  +                                 +    +        A +  
Sbjct: 96  FDLSAYAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMH 155

Query: 97  CRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARL 138
           C KP +  I G+ V  G +IAL  D ++AA  AK      R+
Sbjct: 156 CDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRV 197

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score =  126 bits (319), Expect = 3e-37
 Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 8/129 (6%)

Query: 9   LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFC 67
           ++        +  +T++ P   N  +R++   +  A    + D+SV  +++ G   R+F 
Sbjct: 1   MVFEENSD-EVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFS 59

Query: 68  SGVDLT-----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDV 122
           +G D       S  +  +  +  V  D    +    KP I A+ G+A+  GF+ AL  D 
Sbjct: 60  AGGDFNEVKQLSRSEDIEEWIDRV-IDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQ 118

Query: 123 LVAAKGAKF 131
            + A  A F
Sbjct: 119 RLMASTANF 127

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score =  126 bits (320), Expect = 3e-37
 Identities = 37/131 (28%), Positives = 74/131 (56%), Gaps = 9/131 (6%)

Query: 7   ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RA 65
           +N+ +    P  +  +++NR +  NSL+ +++ ++      ++++ +  V+IL+G+G +A
Sbjct: 8   QNISVDYATP-HVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKA 66

Query: 66  FCSGVDLT-----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALAC 120
           FC+G DL      + E V       +   T+  +E+  +P+I AI+G A+  G E++LAC
Sbjct: 67  FCAGADLKERAGMNEEQVRHAV--SMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLAC 124

Query: 121 DVLVAAKGAKF 131
           D  +AA+ A  
Sbjct: 125 DFRIAAESASL 135

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score =  126 bits (319), Expect = 4e-37
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 5/131 (3%)

Query: 4   TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG 63
           T +   +   R    +  +TINRP++ N++  ++   +  A +    D  V  ++L+G+G
Sbjct: 6   TDAPGALAERRG--NVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAG 63

Query: 64  -RAFCSGVDLTSAEDVFKGDVKDVETDTVAQM--ERCRKPIIGAISGFAVTAGFEIALAC 120
            ++FC+G DL +          D      A        KP I A++G A+  G E+ALA 
Sbjct: 64  DKSFCAGADLKAIARRENLYHPDHPEWGFAGYVRHFIDKPTIAAVNGTALGGGTELALAS 123

Query: 121 DVLVAAKGAKF 131
           D++VA + A+F
Sbjct: 124 DLVVADERAQF 134

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score =  125 bits (317), Expect = 7e-37
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 6/133 (4%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           I + RD  G+  VT++        T +   ++A  F  +  D    V+IL+G+G +FC+ 
Sbjct: 18  IRLERDG-GVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNE 76

Query: 70  VDLTSAEDVFKGDVKDVET---DTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAA 126
           +D TS       D  ++       +  +     P+I A++G       EI +  D+++AA
Sbjct: 77  IDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAA 135

Query: 127 KGAKFID-THARL 138
           + A F D  H   
Sbjct: 136 ESATFQDGPHFPS 148

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score =  125 bits (316), Expect = 2e-36
 Identities = 29/139 (20%), Positives = 59/139 (42%), Gaps = 11/139 (7%)

Query: 2   GQTKSENLILVTRDPMGIAYVT-INRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60
           G +   ++++   D  G   +    R    N+L   ++ ++  A  S   D+S  +++ S
Sbjct: 18  GSSTYRDIVVKKED--GFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDSK-LVLFS 74

Query: 61  GSGRAFCSGVDLTSAEDVFKGDVKDVE-------TDTVAQMERCRKPIIGAISGFAVTAG 113
            +G  FC G+D        + +             + V    + +KPI+ +++G A+  G
Sbjct: 75  AAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLG 134

Query: 114 FEIALACDVLVAAKGAKFI 132
             I   CD++ A + A F 
Sbjct: 135 ASILPLCDLVWANEKAWFQ 153

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score =  124 bits (313), Expect = 5e-36
 Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 6/128 (4%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCS 68
           I   +   GIA +TINRP+  N+     + +M QA      D+++ VIIL+G+G +AFCS
Sbjct: 29  IRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCS 88

Query: 69  GVDLT-----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVL 123
           G D              G       D   Q+  C KP++  ++G+++  G  + + CD+ 
Sbjct: 89  GGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLT 148

Query: 124 VAAKGAKF 131
           +AA  A F
Sbjct: 149 IAADNAIF 156

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score =  123 bits (312), Expect = 6e-36
 Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 7/132 (5%)

Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
           S + +L       +  +T+NR    N+    ++ +M     S   D +V VI+L  +G+ 
Sbjct: 2   SLSDLLYEIQD-KVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKH 60

Query: 66  FCSGVDLTSAEDVFKGDVKDVETDTVA------QMERCRKPIIGAISGFAVTAGFEIALA 119
           F +G DLT  + +     ++   D++        + +  KP I  + G A   G  +A A
Sbjct: 61  FSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAA 120

Query: 120 CDVLVAAKGAKF 131
           CD+ +A+  A+F
Sbjct: 121 CDIAIASTSARF 132

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score =  124 bits (312), Expect = 7e-36
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 16/151 (10%)

Query: 3   QTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62
           + +    I    +      + +  P +LN+L       + +  +  D++  V   I+  S
Sbjct: 4   EIRQNEKISYRIEG-PFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSS 62

Query: 63  GRAFCSGVDLTSAEDVFKGDVKDVETDT--------------VAQMERCRKPIIGAISGF 108
           GR F SG D          D     ++T                   +  K +I  ++G 
Sbjct: 63  GRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGP 122

Query: 109 AVTAGFEIALACDVLVAAK-GAKFIDTHARL 138
           A+     +   CD++ +       +   A L
Sbjct: 123 AIGLSAALVALCDIVYSINDKVYLLYPFANL 153

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score =  122 bits (309), Expect = 2e-35
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 11/133 (8%)

Query: 4   TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG 63
                L++ T     +  + +NRPK  N+L   +MA +      +     +  +++ G G
Sbjct: 13  ADPSTLVVDTVG--PVLTIGLNRPKKRNALNDGLMAALKDCLTDIPDQ--IRAVVIHGIG 68

Query: 64  RAFCSGVDLT-----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIAL 118
             F +G+DL+      A +               +++ CR P+I A+ G  +  G E+A 
Sbjct: 69  DHFSAGLDLSELRERDATEGLVHS--QTWHRVFDKIQYCRVPVIAALKGAVIGGGLELAC 126

Query: 119 ACDVLVAAKGAKF 131
           A  + VA   A +
Sbjct: 127 AAHIRVAEASAYY 139

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score =  121 bits (305), Expect = 5e-35
 Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 8/129 (6%)

Query: 8   NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFC 67
             + V  +   IA  T+N     N+++  +M D+ +    ++KD+++ V+++ G GR F 
Sbjct: 6   KFLSVRVED-HIAVATLNHAP-ANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFS 63

Query: 68  SGVDLT-----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDV 122
           +G D+      +         +     T  ++E+C KP+I AI G A+  G E A++C +
Sbjct: 64  AGADIKEFTSVTEAKQATELAQLG-QVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHM 122

Query: 123 LVAAKGAKF 131
             A + AK 
Sbjct: 123 RFATESAKL 131

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score =  121 bits (305), Expect = 6e-35
 Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 8/120 (6%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLT--- 73
           GI  + INR    NSL+++++  +++A  +L  D+ V  II+       FC+G DL    
Sbjct: 21  GIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERA 80

Query: 74  --SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
             S+ +V            +  +     P I AI G A+  G E+ALACD+ VAA  AK 
Sbjct: 81  KMSSSEVGP--FVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKM 138

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score =  120 bits (303), Expect = 1e-34
 Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 10/131 (7%)

Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
           +E + +V     G+A + ++RP + N++TR +  ++  A   L + + +  ++L G    
Sbjct: 23  NEFVSVVADQ--GLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEI 79

Query: 66  FCSGVDLT-----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALAC 120
           F +G D+      +A +        V  + +  +    KP + A++G+A+ AG  +ALA 
Sbjct: 80  FSAGDDMPELRTLNAPEADTAA--RVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAA 137

Query: 121 DVLVAAKGAKF 131
           D  V+    KF
Sbjct: 138 DWRVSGDNVKF 148

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score =  119 bits (301), Expect = 2e-34
 Identities = 30/131 (22%), Positives = 63/131 (48%), Gaps = 11/131 (8%)

Query: 7   ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RA 65
           + + +VT +   +A +  N  + LN+L++  + D+ QA   L++ E   +I+ + SG + 
Sbjct: 4   QYVNVVTIN--KVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILRAPSGSKV 61

Query: 66  FCSGVDLT-----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALAC 120
           F +G D+        + +   D           +++  KPII  + G      FE+ ++ 
Sbjct: 62  FSAGHDIHELPSGGRDPLSYDDPL---RQITRMIQKFPKPIISMVEGSVWGGAFEMIMSS 118

Query: 121 DVLVAAKGAKF 131
           D+++AA  + F
Sbjct: 119 DLIIAASTSTF 129

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score =  118 bits (299), Expect = 5e-34
 Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 9/131 (6%)

Query: 7   ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RA 65
           + +     +  GIA VTINRP+  N+ T   +A+M  AF     D++V VI+L+G G  A
Sbjct: 13  DEIKYEFYE--GIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLA 70

Query: 66  FCSGVDLT-----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALAC 120
           FCSG D             +    +V  D    +    KP+I  + G+AV  G  + + C
Sbjct: 71  FCSGGDQKKRGHGGYVGEDQIPRLNVL-DLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVC 129

Query: 121 DVLVAAKGAKF 131
           D+ +AA  A F
Sbjct: 130 DLTIAADNAIF 140

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score =  117 bits (296), Expect = 1e-33
 Identities = 27/132 (20%), Positives = 57/132 (43%), Gaps = 9/132 (6%)

Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-R 64
           S+ +++      G+A +    P  +NSL+   + ++  + + L+ D+S   +IL+     
Sbjct: 2   SQRVLVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPG 60

Query: 65  AFCSGVDLT-----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALA 119
            F +G+DLT     S              +   ++ +    ++ AI+G     G  +AL 
Sbjct: 61  VFSAGLDLTEMCGRSPAHYAG--YWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALT 118

Query: 120 CDVLVAAKGAKF 131
           CD  + A   ++
Sbjct: 119 CDYRILADNPRY 130

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score =  117 bits (296), Expect = 1e-33
 Identities = 26/143 (18%), Positives = 53/143 (37%), Gaps = 8/143 (5%)

Query: 1   MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60
           M     + + +  +    + Y+T +RP++ N++  +++ +  Q     +   +V V++L 
Sbjct: 1   MSLVTYQTIKVRFQA--SVCYITFHRPEANNTINDTLIEECLQVLNQCE-TSTVTVVVLE 57

Query: 61  GSGRAFCSGVDLTSAEDVFKGDVKDVE-----TDTVAQMERCRKPIIGAISGFAVTAGFE 115
           G    FC G D        K   K         D   +++      I  + G     G  
Sbjct: 58  GLPEVFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLG 117

Query: 116 IALACDVLVAAKGAKFIDTHARL 138
              A D+ +A + A F  +    
Sbjct: 118 FVSATDIAIADQTASFSLSELLF 140

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score =  117 bits (296), Expect = 1e-33
 Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 13/133 (9%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG------ 63
           IL  +   GIA + INRP   N+     + ++  AF +  +D  + V++L+G+G      
Sbjct: 12  ILYYKAG-GIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGK 70

Query: 64  RAFCSGVDLT-----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIAL 118
            AFCSG D +        D       +V  D    +    K +I  ++G+A+  G  + L
Sbjct: 71  YAFCSGGDQSVRGEGGYIDDQGTPRLNVL-DLQRLIRSMPKVVIALVAGYAIGGGHVLHL 129

Query: 119 ACDVLVAAKGAKF 131
            CD+ +AA  A F
Sbjct: 130 VCDLTIAADNAIF 142

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score =  117 bits (295), Expect = 3e-33
 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 10/139 (7%)

Query: 1   MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60
           M  T S   I    D   +   T N P  +N +   ++ D+    + L    +  V+I  
Sbjct: 1   MSLTASYETIKARLDG-TVLSATFNAPP-MNLIGPEVVRDLVALLEELAHPTAPRVVIFD 58

Query: 61  GSG-RAFCSGVDLT-----SAEDVFKGDVKDVETDTV-AQMERCRKPIIGAISGFAVTAG 113
            +    F   VD+T     +AE    G   D     +  ++ +     I  + G A  AG
Sbjct: 59  SADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAG 118

Query: 114 FEIALACDVLVAAKG-AKF 131
            E  LACD+  A++  A  
Sbjct: 119 SEFLLACDMRFASRENAIL 137

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score =  116 bits (293), Expect = 4e-33
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 11/147 (7%)

Query: 1   MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60
                 +           +A +T+N P + N+L+ ++++ + Q  +    D +V V++L+
Sbjct: 4   SMDALVDYAGPAATGG-PVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLA 62

Query: 61  GSGRAFCSGVDL---------TSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVT 111
            +G  FC+G DL         +SA D+     +++    +  +   R P+I AI G    
Sbjct: 63  HTGGTFCAGADLSEAGSGGSPSSAYDMAVERAREM-AALMRAIVESRLPVIAAIDGHVRA 121

Query: 112 AGFEIALACDVLVAAKGAKFIDTHARL 138
            GF +  ACD+ VA   + F  T AR+
Sbjct: 122 GGFGLVGACDIAVAGPRSSFALTEARI 148

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score =  118 bits (297), Expect = 1e-32
 Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 30/158 (18%)

Query: 2   GQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG 61
           G+ + E + L  RD  G+A +T+ R   LN+     + DM  A      D  V V +L G
Sbjct: 162 GEVEMEAVHLERRD--GVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRG 219

Query: 62  S---------GRAFCSGVDLT-------------------SAEDVFKGDVKDVETDTVAQ 93
                      R F +G++L                        + +G + + +      
Sbjct: 220 GVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWH 279

Query: 94  MERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF 131
             R  KP + A+ GFA+  G ++ L  D ++A+  A F
Sbjct: 280 SPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYF 317

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score =  114 bits (289), Expect = 2e-32
 Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 13/141 (9%)

Query: 1   MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILS 60
           +       L + +    G+A + ++ P  +N +  +MM ++     +L  D SV VI+ S
Sbjct: 3   LRNDAYSTLRVSSEH--GVARIILDNPP-VNVIGATMMRELRTVLTTLADDSSVRVIVFS 59

Query: 61  GSG-RAFCSGVDLT-----SAEDVFKGDVK---DVETDTVAQMERCRKPIIGAISGFAVT 111
            +    F + VD+       A            +V       +    +  I  ++G A  
Sbjct: 60  SADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARG 119

Query: 112 AGFEIALACDVLVAAKG-AKF 131
            G E   A D+  AA   A  
Sbjct: 120 GGAEFVAAADMAFAAAETAGL 140

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score =  113 bits (286), Expect = 2e-32
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 7/129 (5%)

Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
           S  +     D   I  + ++  K +N L  +M   + +A  + D+D  V  ++++G+ R 
Sbjct: 4   SGPVTYTHDD--AIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRDN-VGALVIAGNHRV 59

Query: 66  FCSGVDLTSAEDVFKGDVKDVET---DTVAQMERCRKPIIGAISGFAVTAGFEIALACDV 122
           F  G DL            D+     +   ++    KP++ A +G A+  G  +  + D 
Sbjct: 60  FSGGFDLKVLTSGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDH 119

Query: 123 LVAAKGAKF 131
            VAA     
Sbjct: 120 RVAAHAYNV 128

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score =  116 bits (291), Expect = 2e-32
 Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 22/154 (14%)

Query: 7   ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGR-- 64
            ++            V  NRP+  N+     + ++ +          V V++L+G+G   
Sbjct: 55  TDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSP 114

Query: 65  -----AFCSGVDL-----TSAEDVFKGDVKDVE---------TDTVAQMERCRKPIIGAI 105
                AFCSG D      +  +         V+          +    +    K +I  +
Sbjct: 115 KDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLV 174

Query: 106 SGFAVTAGFEIALACDVLVAAK-GAKFIDTHARL 138
           +G+A   G  + + CD+ +A++  A+F  T A +
Sbjct: 175 NGWAAGGGHSLHVVCDLTLASREYARFKQTDADV 208

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score =  113 bits (285), Expect = 5e-32
 Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 8/134 (5%)

Query: 3   QTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS 62
           +TK + L +   D  GIA + ++  K  NS       +   A   +  D  + V+I+   
Sbjct: 5   ETKKQYLTVFKED--GIAEIHLHINK-SNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSD 61

Query: 63  G-RAFCSGVDLTSAEDVFKGDVKDVE---TDTVAQMERCRKPIIGAISGFAVTAGFEIAL 118
             + F +G D+                   +T+ ++ R  +  I  + G  V  G E+AL
Sbjct: 62  VPKFFSAGADINFLRSADPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMAL 121

Query: 119 ACDVLVAAKGA-KF 131
           ACD+      A K 
Sbjct: 122 ACDLRFMGDEAGKI 135

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score =  106 bits (268), Expect = 7e-30
 Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 8/129 (6%)

Query: 6   SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
           S+ +     D  G+A +T+N  K +N+++  ++     A    +KD ++  +I++G    
Sbjct: 5   SDLVSYHLDD--GVATLTLNNGK-VNAISPDVIIAFNAALDQAEKDRAI--VIVTGQPGI 59

Query: 66  FCSGVDLT--SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVL 123
              G DL   ++      ++    +    +M     PII A  G AV  G  + L+ D  
Sbjct: 60  LSGGYDLKVMTSSAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYR 119

Query: 124 VAAKG-AKF 131
           +   G    
Sbjct: 120 IGVAGPFSI 128

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score = 98.3 bits (245), Expect = 7e-26
 Identities = 22/133 (16%), Positives = 48/133 (36%), Gaps = 19/133 (14%)

Query: 18  GIAYVTINRPKSLNS----LTRSMMADMAQAFKSLDK-----DESVLVIILSGSGRAFCS 68
            + ++ ++   ++N      +  ++ D+     +L +           ++L+     F  
Sbjct: 41  DVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNL 100

Query: 69  GVDLTS-AEDVFKGDVKDVET---------DTVAQMERCRKPIIGAISGFAVTAGFEIAL 118
           G DL    + + +GD   +                    R   I  + G A+  GFE AL
Sbjct: 101 GGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAAL 160

Query: 119 ACDVLVAAKGAKF 131
           +C  ++A +G   
Sbjct: 161 SCHTIIAEEGVMM 173

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score = 96.2 bits (240), Expect = 3e-24
 Identities = 29/129 (22%), Positives = 63/129 (48%), Gaps = 6/129 (4%)

Query: 4   TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG 63
            +  ++    R P  +A + +  P  +N+++ +++ ++    +    D +V  I++ G+ 
Sbjct: 16  PRGSHMAEYLRLPHSLAMIRLCNP-PVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGAN 74

Query: 64  RAFCSGVDLTSAEDVFKG-DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDV 122
             FC+G D+        G  +  +    V +++R +KP++ AI G A+  G E+AL C  
Sbjct: 75  GNFCAGADIHGFSAFTPGLALGSL----VDEIQRYQKPVLAAIQGVALGGGLELALGCHY 130

Query: 123 LVAAKGAKF 131
            +A   A+ 
Sbjct: 131 RIANAKARV 139

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score = 95.4 bits (238), Expect = 5e-24
 Identities = 32/134 (23%), Positives = 68/134 (50%), Gaps = 7/134 (5%)

Query: 4   TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG 63
           ++++   ++     G+A +T+  P  +NSL+  ++ ++   ++       V  I+++G+ 
Sbjct: 3   SRTKGKTVMEVGGDGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAK 61

Query: 64  RAFCSGVDLTSAEDVFKGDVKDVET------DTVAQMERCRKPIIGAISGFAVTAGFEIA 117
             F  G D++   ++ KG+VK+ +            +E  RKP + AI G A+  G E+A
Sbjct: 62  GRFSGGFDISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELA 121

Query: 118 LACDVLVAAKGAKF 131
           +AC   ++A  A+ 
Sbjct: 122 MACHARISAPAAQL 135

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 94.3 bits (234), Expect = 1e-23
 Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 21/143 (14%)

Query: 7   ENLILVTRDPMGIAYVTINRPK----------SLNSLTRSMMADMAQAFKSL--DKDESV 54
           ++  L       +A + I+  +           LNS    +  ++  A + +  +  E  
Sbjct: 21  KHWKLSFNG--PVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVR 78

Query: 55  LVIILSGSGRAFCSGVDL------TSAEDV-FKGDVKDVETDTVAQMERCRKPIIGAISG 107
            V++ S   R FCSG ++      T A  V F     +                + A++G
Sbjct: 79  TVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNG 138

Query: 108 FAVTAGFEIALACDVLVAAKGAK 130
                G+E+ALACD +       
Sbjct: 139 ACAGGGYELALACDEIYLVDDRS 161

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score = 92.7 bits (231), Expect = 6e-23
 Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 7/127 (5%)

Query: 12  VTRDPMGIAYVTINRP-KSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGV 70
           VT    GI  +  +   +S+N   R  + ++ QA  ++  D SV  +I+S     F  G 
Sbjct: 10  VTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGA 69

Query: 71  DLTSAEDVFKGDVKDVET------DTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLV 124
           D+T   + FK    ++           +  E    P + AI+G A+  G E+ LA D  V
Sbjct: 70  DITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRV 129

Query: 125 AAKGAKF 131
            A  AK 
Sbjct: 130 MADSAKI 136

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363

 Score = 78.5 bits (194), Expect = 3e-18
 Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 8/135 (5%)

Query: 4   TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG 63
           T +   +L+ +       +T+NRPK LN+LT +M+  +    K  ++D    +II+ G+G
Sbjct: 2   TDAAEEVLLGKKG-CTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAG 60

Query: 64  -RAFCSGVDLTSAEDVFKGDVKDVET------DTVAQMERCRKPIIGAISGFAVTAGFEI 116
            +AFC+G D+    +  K   K               +  C+KP +  I G  +  G  +
Sbjct: 61  GKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGL 120

Query: 117 ALACDVLVAAKGAKF 131
           ++     VA +   F
Sbjct: 121 SVHGQFRVATEKCLF 135

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407

 Score = 76.7 bits (189), Expect = 1e-17
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 11/132 (8%)

Query: 11  LVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSG 69
           L T     +  VT+N  K+LN+L   M+  M        KD  +  ++L GSG +AFC+G
Sbjct: 44  LATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAG 103

Query: 70  VDLTS-AEDVFKGDVKDVETDTV---------AQMERCRKPIIGAISGFAVTAGFEIALA 119
            D+ +          +  E   V           +    KP++    G  +  G  +   
Sbjct: 104 GDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAG 163

Query: 120 CDVLVAAKGAKF 131
               V  + ++ 
Sbjct: 164 ASHKVVTETSRI 175

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.73
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.73
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.64
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.39
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.14
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.0
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	98.95
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	98.42
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	98.11
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	97.97
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	97.91
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	97.73
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	97.67
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	97.5
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.47
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	97.43
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	97.42
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.42
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	97.4
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.25
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	96.8
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	96.79
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	96.73
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.59
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	96.58
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	96.49
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	95.65
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	95.12
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	94.81
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	94.63
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	94.5
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	94.5
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	94.36
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	92.73
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	91.42
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	91.2
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	89.13
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	88.83
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	87.98
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	87.55
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	86.18
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	85.94
3mwd_B	334	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	85.82
3dmy_A	480	Protein FDRA; predicted actyl-COA synthetase, nysg	83.66
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	82.64
3pff_A	829	ATP-citrate synthase; phosphohistidine, organic ac	82.11

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=1e-41  Score=255.29  Aligned_cols=135  Identities=28%  Similarity=0.507  Sum_probs=121.7

Q ss_pred             cEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc-CcccHH
Q 032207            9 LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG-DVKDVE   87 (145)
Q Consensus         9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~-~~~~~~   87 (145)
                      .+.++++ ++|++||||||+++|+||.+|+.+|.++++++++|+++|+|||||.|++||+|.|++++...... ...+..
T Consensus         6 ~l~ve~~-~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~   84 (258)
T 4fzw_A            6 ELIVSRQ-QRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLAATLNDTR   84 (258)
T ss_dssp             EEEEEEE-TTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTCCHHHHHTCSH
T ss_pred             cEEEEEE-CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccchhhhHHHhHH
Confidence            4889997 99999999999999999999999999999999999999999999999999999999987643221 122345


Q ss_pred             HHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           88 TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        88 ~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      .+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        85 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  141 (258)
T 4fzw_A           85 PQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGA  141 (258)
T ss_dssp             HHHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCS
T ss_pred             HHHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCc
Confidence            678889999999999999999999999999999999999999999999999987753

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=2.1e-41  Score=253.04  Aligned_cols=133  Identities=32%  Similarity=0.469  Sum_probs=120.5

Q ss_pred             EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc--CcccHH
Q 032207           10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG--DVKDVE   87 (145)
Q Consensus        10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~--~~~~~~   87 (145)
                      |.++++ |+|++||||||+++|+||.+|+++|.++++++++|+++|+|||||.|+.||+|.|++++......  ......
T Consensus         2 vl~E~~-dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   80 (254)
T 3hrx_A            2 VLKERQ-DGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRY   80 (254)
T ss_dssp             EEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHH
T ss_pred             eEEEEE-CCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhcccchhhHHHHHHH
Confidence            677887 89999999999999999999999999999999999999999999999999999999987543322  123345


Q ss_pred             HHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           88 TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        88 ~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      ++.+..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus        81 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~  136 (254)
T 3hrx_A           81 NRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPD  136 (254)
T ss_dssp             HHHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCC
T ss_pred             HHHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCc
Confidence            67788999999999999999999999999999999999999999999999998775

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=1.1e-40  Score=251.59  Aligned_cols=137  Identities=32%  Similarity=0.588  Sum_probs=117.1

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCc---
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDV---   83 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~---   83 (145)
                      .+.|.++.+ ++|++||||||+++|+||.+|+++|.++++++++|+++|+|||||.|+.||+|.|++++........   
T Consensus        14 ~e~il~~~~-~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~   92 (274)
T 4fzw_C           14 MEFILSHVE-KGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAPDL   92 (274)
T ss_dssp             --CEEEEEE-TTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------CCCH
T ss_pred             cccEEEEEE-CCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccchHH
Confidence            367888887 9999999999999999999999999999999999999999999999999999999998754332211   


Q ss_pred             ----ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           84 ----KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        84 ----~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                          .+.++++++++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        93 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  157 (274)
T 4fzw_C           93 GMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDC  157 (274)
T ss_dssp             HHHHHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCc
Confidence                1223567788999999999999999999999999999999999999999999999988764

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=4.4e-40  Score=247.44  Aligned_cols=138  Identities=23%  Similarity=0.287  Sum_probs=124.9

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhh---hhccc-
Q 032207            6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAE---DVFKG-   81 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~---~~~~~-   81 (145)
                      .++.|.++.+ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||||.|+.||+|.|++++.   ..... 
T Consensus         3 ~~~~v~~~~~-~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   81 (266)
T 3fdu_A            3 LHPHLNANLE-GGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAG   81 (266)
T ss_dssp             CCTTEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCCCS
T ss_pred             CCCeEEEEEE-CCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccchh
Confidence            5678999997 999999999999999999999999999999999999999999999999999999999987   32222 


Q ss_pred             -CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           82 -DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        82 -~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                       ......+++++++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        82 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  145 (266)
T 3fdu_A           82 PAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEG  145 (266)
T ss_dssp             CGGGSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCT
T ss_pred             hHHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcc
Confidence             223456778889999999999999999999999999999999999999999999999987763

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=1.6e-39  Score=244.63  Aligned_cols=137  Identities=24%  Similarity=0.342  Sum_probs=123.1

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCc---
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDV---   83 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~---   83 (145)
                      ++.|.++++ ++|++|+||||+++|++|.+|+++|.+++++++.|+++|+|||||.|+.||+|.|++++........   
T Consensus         3 ~~~v~~~~~-~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   81 (268)
T 3i47_A            3 LSDLLYEIQ-DKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEEN   81 (268)
T ss_dssp             CCSEEEEEE-TTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHHHH
T ss_pred             CCEEEEEEE-CCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccccccHHHH
Confidence            567999997 9999999999999999999999999999999999999999999999999999999998765332211   


Q ss_pred             ---ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           84 ---KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        84 ---~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                         ...+++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        82 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  145 (268)
T 3i47_A           82 LEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAV  145 (268)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTT
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCccc
Confidence               1234567888999999999999999999999999999999999999999999999987753

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=6.4e-40  Score=255.04  Aligned_cols=140  Identities=27%  Similarity=0.429  Sum_probs=123.1

Q ss_pred             CCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcccC
Q 032207            4 TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKGD   82 (145)
Q Consensus         4 ~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~~   82 (145)
                      +..++.|.++++ |+|++||||||+++|+||.+|+++|.++++++++|+++|+|||||.| +.||+|+|++++.......
T Consensus         5 t~~~e~vl~e~~-~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~   83 (353)
T 4hdt_A            5 TAKNEDVLVNVE-GGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKAD   83 (353)
T ss_dssp             ---CCSEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTT
T ss_pred             cCCCCcEEEEEE-CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchh
Confidence            456778999997 99999999999999999999999999999999999999999999998 7999999999876543322


Q ss_pred             ------cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           83 ------VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        83 ------~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                            .....++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        84 ~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~  151 (353)
T 4hdt_A           84 GAEARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDV  151 (353)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCT
T ss_pred             hHHHHHHHHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCc
Confidence                  11233567788999999999999999999999999999999999999999999999987763

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=1.6e-39  Score=244.52  Aligned_cols=141  Identities=20%  Similarity=0.336  Sum_probs=123.1

Q ss_pred             CCCCCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc
Q 032207            1 MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK   80 (145)
Q Consensus         1 m~~~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~   80 (145)
                      |+.+ +++.|.++++ ++|++|+||||+++|+||.+|+++|.++++++++| ++|+|||||.|+.||+|.|++++.....
T Consensus         1 m~~m-~~~~i~~~~~-~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~g~~F~aG~Dl~~~~~~~~   77 (267)
T 3hp0_A            1 MSLV-TYQTIKVRFQ-ASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQEIYQEMK   77 (267)
T ss_dssp             -----CCSSEEEEEE-TTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECCSSCSBCCBCHHHHHHTTT
T ss_pred             CCCC-CCceEEEEEE-CCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECCCCceecCcCHHHHHhccc
Confidence            4443 3577999997 99999999999999999999999999999999986 6999999999999999999999865321


Q ss_pred             -----cCcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           81 -----GDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        81 -----~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                           .......++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  146 (267)
T 3hp0_A           78 RGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPAC  146 (267)
T ss_dssp             TTCCSCCCCHHHHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTT
T ss_pred             ChHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchh
Confidence                 1223456778899999999999999999999999999999999999999999999999988764

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=4.3e-40  Score=246.52  Aligned_cols=142  Identities=23%  Similarity=0.342  Sum_probs=124.7

Q ss_pred             CCC-CCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhc
Q 032207            1 MGQ-TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVF   79 (145)
Q Consensus         1 m~~-~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~   79 (145)
                      |+. ...++.+.++++ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||+|.|+.||+|.|++++....
T Consensus         4 m~~~~~~~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~   82 (258)
T 3lao_A            4 MSEANSGPGRVTREQR-GHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKL   82 (258)
T ss_dssp             -CCSCCSSCCEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGC
T ss_pred             ccccCCCCCeEEEEEE-CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhcc
Confidence            554 445788999997 999999999999999999999999999999999999999999999999999999999986643


Q ss_pred             ccC---cccHHHHHHHHH-hcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           80 KGD---VKDVETDTVAQM-ERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        80 ~~~---~~~~~~~~~~~l-~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      ...   ....+++.+.++ .++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus        83 ~~~~~~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~  150 (258)
T 3lao_A           83 AASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPL  150 (258)
T ss_dssp             BTTBCCCCTTCCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSS
T ss_pred             chhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCC
Confidence            321   222334556778 8999999999999999999999999999999999999999999998775

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=1.6e-39  Score=243.16  Aligned_cols=138  Identities=25%  Similarity=0.356  Sum_probs=121.9

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc----
Q 032207            6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG----   81 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~----   81 (145)
                      .+..+.++.+ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||+|.|+.||+|.|++++......    
T Consensus         4 ~~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   82 (256)
T 3qmj_A            4 SMVTLQIDDD-NRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNFS   82 (256)
T ss_dssp             --CCEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSCC
T ss_pred             CcceEEEEEE-CCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhHH
Confidence            4567899997 99999999999999999999999999999999999999999999999999999999997653322    


Q ss_pred             CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           82 DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      .....++++++++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        83 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~  145 (256)
T 3qmj_A           83 EGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEA  145 (256)
T ss_dssp             CCSSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCT
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCc
Confidence            234556788899999999999999999999999999999999999999999999999988764

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=2e-39  Score=245.30  Aligned_cols=138  Identities=30%  Similarity=0.417  Sum_probs=124.1

Q ss_pred             CCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCc-
Q 032207            5 KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDV-   83 (145)
Q Consensus         5 ~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~-   83 (145)
                      ++++.|.++++ ++|++|+||||+++|+||.+|+++|.++++++++|+++|+|||+|.|+.||+|.|++++........ 
T Consensus        14 ~~~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   92 (279)
T 3g64_A           14 PEWRHLRVEIT-DGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDT   92 (279)
T ss_dssp             SCCSSEEEEEE-TTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCH
T ss_pred             CCCCeEEEEEE-CCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchh
Confidence            45678999997 9999999999999999999999999999999999999999999999999999999999865443221 


Q ss_pred             ------ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeec-CC
Q 032207           84 ------KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCK-IS  143 (145)
Q Consensus        84 ------~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~-~g  143 (145)
                            ....++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+. |+
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~  159 (279)
T 3g64_A           93 ARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGD  159 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCC
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCc
Confidence                  1233567788999999999999999999999999999999999999999999999987 65

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=4.9e-40  Score=250.67  Aligned_cols=143  Identities=34%  Similarity=0.459  Sum_probs=113.1

Q ss_pred             CCCCCCCCcEEEEEcCC-cEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhh--
Q 032207            1 MGQTKSENLILVTRDPM-GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAED--   77 (145)
Q Consensus         1 m~~~~~~~~i~~~~~~~-~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~--   77 (145)
                      |+.+.+++.|.++++ + +|++|+||||+++|+||.+|+++|.++++++++|+++|+|||||.|+.||+|.|++++..  
T Consensus        22 m~~~~~~~~v~~~~~-~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~  100 (298)
T 3qre_A           22 MSAADAQDAVLYEAT-PGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAA  100 (298)
T ss_dssp             ------CCSEEEEEC-TTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC---------
T ss_pred             cCCCCCCCeEEEEEe-CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcc
Confidence            444556788999997 7 999999999999999999999999999999999999999999999999999999998764  


Q ss_pred             -hccc--------CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           78 -VFKG--------DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        78 -~~~~--------~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                       ....        ......++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~  176 (298)
T 3qre_A          101 GYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEF  176 (298)
T ss_dssp             --------------------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTT
T ss_pred             ccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcch
Confidence             1111        011112344567889999999999999999999999999999999999999999999987764

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=6.5e-40  Score=245.30  Aligned_cols=137  Identities=36%  Similarity=0.587  Sum_probs=116.7

Q ss_pred             CCCCCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc
Q 032207            1 MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK   80 (145)
Q Consensus         1 m~~~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~   80 (145)
                      |..+.+++.+.++.+ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||+|.|+.||+|.|++++...  
T Consensus         2 ~~~m~~~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~--   78 (256)
T 3pe8_A            2 PGSMADSPVLLVDTT-DRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDT--   78 (256)
T ss_dssp             ------CCSEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC-----
T ss_pred             CCCCCCCCcEEEEEE-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhh--
Confidence            456778889999997 99999999999999999999999999999999999999999999999999999999987543  


Q ss_pred             cCcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           81 GDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                          ..++....++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        79 ----~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~  138 (256)
T 3pe8_A           79 ----TELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTW  138 (256)
T ss_dssp             ----------CCCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCS
T ss_pred             ----HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcc
Confidence                122333467889999999999999999999999999999999999999999999987763

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=5e-39  Score=241.10  Aligned_cols=136  Identities=26%  Similarity=0.473  Sum_probs=120.9

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC----
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD----   82 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~----   82 (145)
                      ++.+.++++ ++|++|+||||++ |++|.+|+++|.++++++++|+++|+|||||.|+.||+|.|++++.......    
T Consensus         5 ~~~v~~~~~-~~v~~itlnrp~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   82 (261)
T 3pea_A            5 LKFLSVRVE-DHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATE   82 (261)
T ss_dssp             CSSEEEEEE-TTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHHHHHH
T ss_pred             ccceEEEEE-CCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCchhHHHH
Confidence            567999997 9999999999998 9999999999999999999999999999999999999999999876432211    


Q ss_pred             cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           83 VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      .....++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        83 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  144 (261)
T 3pea_A           83 LAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGF  144 (261)
T ss_dssp             HHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCS
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCc
Confidence            11223456788999999999999999999999999999999999999999999999987753

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=2.6e-39  Score=243.09  Aligned_cols=140  Identities=26%  Similarity=0.460  Sum_probs=122.6

Q ss_pred             CCCCCcEEEE-EcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhccc
Q 032207            4 TKSENLILVT-RDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKG   81 (145)
Q Consensus         4 ~~~~~~i~~~-~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~   81 (145)
                      +.+++.|.++ .+ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||||.| +.||+|.|++++......
T Consensus         4 mm~~~~v~~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~   82 (265)
T 3kqf_A            4 MLQLQNISVDYAT-PHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEE   82 (265)
T ss_dssp             ---CCSEEEECCS-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHH
T ss_pred             cccCCeEEEEEee-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccCHH
Confidence            3457889999 65 99999999999999999999999999999999999999999999999 999999999987643211


Q ss_pred             ---CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           82 ---DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        82 ---~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                         ......++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  148 (265)
T 3kqf_A           83 QVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGA  148 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCS
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCc
Confidence               112334667888999999999999999999999999999999999999999999999987763

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=5.8e-39  Score=242.48  Aligned_cols=141  Identities=23%  Similarity=0.376  Sum_probs=121.9

Q ss_pred             CCCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc--
Q 032207            3 QTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK--   80 (145)
Q Consensus         3 ~~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~--   80 (145)
                      +...++.+.++++ ++|++|+||||+++|+||.+|+++|.++++++++|+++|+|||+|.|+.||+|+|++++.....  
T Consensus         4 ~~~~~~~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~   82 (276)
T 2j5i_A            4 YEGRWKTVKVEIE-DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAG   82 (276)
T ss_dssp             CTTCCSSEEEEEE-TEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHS
T ss_pred             ccCCCceEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccc
Confidence            4566788999997 8999999999999999999999999999999999999999999999999999999998753221  


Q ss_pred             -cCcccHH----HHH-HHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           81 -GDVKDVE----TDT-VAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        81 -~~~~~~~----~~~-~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                       ......+    .+. +.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  152 (276)
T 2j5i_A           83 PEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGN  152 (276)
T ss_dssp             CTTHHHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcc
Confidence             1111112    222 456789999999999999999999999999999999999999999999987764

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=5.8e-39  Score=240.25  Aligned_cols=136  Identities=29%  Similarity=0.498  Sum_probs=116.6

Q ss_pred             CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC-ccc-
Q 032207            8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD-VKD-   85 (145)
Q Consensus         8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~-~~~-   85 (145)
                      +.+.++.+ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||||.|+.||+|+|++++....... ..+ 
T Consensus         3 ~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   81 (257)
T 2ej5_A            3 ETIRYEVK-GQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRS   81 (257)
T ss_dssp             SSEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CHHHHHHH
T ss_pred             CceEEEeE-CCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhccchhHHHHH
Confidence            46888887 899999999999999999999999999999999999999999999999999999999875422111 111 


Q ss_pred             HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           86 VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        86 ~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      .+++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        82 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  140 (257)
T 2ej5_A           82 RYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDA  140 (257)
T ss_dssp             THHHHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCT
T ss_pred             HHHHHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcc
Confidence            24677888999999999999999999999999999999999999999999999987763

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=1.4e-38  Score=241.44  Aligned_cols=139  Identities=22%  Similarity=0.252  Sum_probs=123.1

Q ss_pred             CCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhc---
Q 032207            4 TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVF---   79 (145)
Q Consensus         4 ~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~---   79 (145)
                      ..+++.|.++++ ++|++|+||||+ .|+||.+|+++|.++++++++|+++|+|||||.| +.||+|.|++++....   
T Consensus         5 ~~~~~~i~~~~~-~~va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~   82 (287)
T 3gkb_A            5 NDAYSTLRVSSE-HGVARIILDNPP-VNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQ   82 (287)
T ss_dssp             --CCSSEEEEEE-TTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHH
T ss_pred             CCCCCeEEEEEE-CCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccc
Confidence            345788999997 999999999998 7999999999999999999999999999999998 8999999999875321   


Q ss_pred             -----ccCcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeC-CcEEeccceeeeecCCC
Q 032207           80 -----KGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAK-GAKFIDTHARLVCKISC  144 (145)
Q Consensus        80 -----~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~-~a~f~~pe~~~G~~~g~  144 (145)
                           .......+++++.++.++|||+||+|||+|+|||++|+++||+|||++ +++|++||+++|+.|+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~  153 (287)
T 3gkb_A           83 ELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGG  153 (287)
T ss_dssp             HHHHTSCTTCCTTHHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCS
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCc
Confidence                 112234567888999999999999999999999999999999999999 99999999999987764

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=4.7e-39  Score=242.95  Aligned_cols=136  Identities=27%  Similarity=0.443  Sum_probs=122.5

Q ss_pred             CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc-----C
Q 032207            8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG-----D   82 (145)
Q Consensus         8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~-----~   82 (145)
                      +.+.++.+ ++|++|+||||++.|+||.+|+.+|.++++++++|+++|+|||+|.|+.||+|.|++++......     .
T Consensus        28 ~~v~~~~~-~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~  106 (276)
T 3rrv_A           28 TEIDVRAD-GALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSADADLRAK  106 (276)
T ss_dssp             TTEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHHCHHHHHH
T ss_pred             CeEEEEEE-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcccchHHHHH
Confidence            57899987 99999999999999999999999999999999999999999999999999999999987653221     1


Q ss_pred             cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           83 VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      .....++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus       107 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~  168 (276)
T 3rrv_A          107 TIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAAD  168 (276)
T ss_dssp             HHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCS
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCc
Confidence            12334667889999999999999999999999999999999999999999999999988764

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=4.7e-39  Score=240.51  Aligned_cols=134  Identities=33%  Similarity=0.539  Sum_probs=119.9

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccH
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDV   86 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   86 (145)
                      .+.+.++++ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||+|.|+.||+|.|++++...   .....
T Consensus         5 ~~~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~---~~~~~   80 (255)
T 3p5m_A            5 MNGISVEHD-GAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTA---GAADA   80 (255)
T ss_dssp             BTTEEEEEE-TTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CHH---HHHHH
T ss_pred             CceEEEEEE-CCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcch---HHHHH
Confidence            456899997 99999999999999999999999999999999999999999999999999999999987631   23345


Q ss_pred             HHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           87 ETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        87 ~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      ++++++++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        81 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~  138 (255)
T 3p5m_A           81 ANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDG  138 (255)
T ss_dssp             HHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCT
T ss_pred             HHHHHHHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCc
Confidence            5678889999999999999999999999999999999999999999999999987753

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=4.3e-39  Score=241.70  Aligned_cols=137  Identities=24%  Similarity=0.361  Sum_probs=122.3

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcc-cccCCchhhhh--hcccC-
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAF-CSGVDLTSAED--VFKGD-   82 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F-~~G~dl~~~~~--~~~~~-   82 (145)
                      ++.|.++.+ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||||.|+.| |+|.|++++..  ..... 
T Consensus         3 ~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~~~   81 (263)
T 3lke_A            3 LSYVHTEIQ-NDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDV   81 (263)
T ss_dssp             CCSEEEEEC-SSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSSSH
T ss_pred             CcEEEEEEE-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCCHH
Confidence            567999987 99999999999999999999999999999999999999999999999999 99999999875  11111 


Q ss_pred             ----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           83 ----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        83 ----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                          .....++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  147 (263)
T 3lke_A           82 RLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDL  147 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCT
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCc
Confidence                12334667889999999999999999999999999999999999999999999999987764

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=5.5e-39  Score=240.48  Aligned_cols=136  Identities=29%  Similarity=0.495  Sum_probs=119.8

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc--cCc
Q 032207            6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK--GDV   83 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~--~~~   83 (145)
                      ++..+.++.+ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||||.|+.||+|+|++++.....  ...
T Consensus         3 ~~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   81 (258)
T 2pbp_A            3 EFVSIAARQE-GAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPIRLEW   81 (258)
T ss_dssp             -CCSEEEEEE-TTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCCHHHHHH
T ss_pred             CcceEEEEee-CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhHHH
Confidence            4667888987 8999999999999999999999999999999999999999999999999999999998754221  011


Q ss_pred             ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           84 KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      ...+ +.+.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus        82 ~~~~-~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~  140 (258)
T 2pbp_A           82 LNQF-ADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPG  140 (258)
T ss_dssp             HCTT-HHHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCC
T ss_pred             HHHH-HHHHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCc
Confidence            1122 5678899999999999999999999999999999999999999999999998765

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=8.7e-39  Score=242.99  Aligned_cols=135  Identities=30%  Similarity=0.489  Sum_probs=115.9

Q ss_pred             CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC-----
Q 032207            8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD-----   82 (145)
Q Consensus         8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~-----   82 (145)
                      +.+.++.+ ++|++|+||||+++|+||.+|+++|.++++.+++|+++|+|||+|.|+.||+|.|++++.......     
T Consensus        24 ~~v~~~~~-~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~  102 (290)
T 3sll_A           24 FVLVDRPR-PEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQP  102 (290)
T ss_dssp             CEEEEEEE-TTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCCHH
T ss_pred             eEEEEEEE-CCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccccch
Confidence            56888887 999999999999999999999999999999999999999999999999999999999876533221     


Q ss_pred             -----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           83 -----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        83 -----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                           ....+++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~  168 (290)
T 3sll_A          103 TIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTAS  168 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSC
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCC
Confidence                 1233456788899999999999999999999999999999999999999999999998875

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=1.1e-38  Score=242.24  Aligned_cols=142  Identities=20%  Similarity=0.223  Sum_probs=126.2

Q ss_pred             CCCCCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCC-cccccCCchhhhhhc
Q 032207            1 MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGR-AFCSGVDLTSAEDVF   79 (145)
Q Consensus         1 m~~~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~-~F~~G~dl~~~~~~~   79 (145)
                      |+.+.+++.|.++++ ++|++|+||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|+ +||+|.|++++....
T Consensus         1 Ms~~~~~~~v~~~~~-~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~   78 (289)
T 3h0u_A            1 MSLTASYETIKARLD-GTVLSATFNAPP-MNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYT   78 (289)
T ss_dssp             -CCCCCCSSEEEEEE-TTEEEEEECCTT-TCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHH
T ss_pred             CCCCCCCCeEEEEEE-CCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcC
Confidence            888889999999997 999999999998 89999999999999999999999999999999985 556777999876532


Q ss_pred             cc------CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCC-cEEeccceeeeecCCC
Q 032207           80 KG------DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG-AKFIDTHARLVCKISC  144 (145)
Q Consensus        80 ~~------~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~-a~f~~pe~~~G~~~g~  144 (145)
                      ..      .....+++++.++.++|||+||+|||+|+|||++|+++||+|||+++ ++|++||+++|+.|+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~  150 (289)
T 3h0u_A           79 AEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGA  150 (289)
T ss_dssp             HHHHTTSSTTCCSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCS
T ss_pred             cchhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCc
Confidence            11      23445678899999999999999999999999999999999999998 9999999999988764

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=5.9e-39  Score=243.59  Aligned_cols=139  Identities=22%  Similarity=0.349  Sum_probs=120.6

Q ss_pred             CCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC-
Q 032207            4 TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD-   82 (145)
Q Consensus         4 ~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~-   82 (145)
                      +.++..+.++.+ ++|++|+||||+++|+||.+|+++|.++++++++|+++|+|||||.|+.||+|+|++++....... 
T Consensus        29 ~~~~~~v~~~~~-~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~  107 (287)
T 2vx2_A           29 ESEPRPTSARQL-DGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDY  107 (287)
T ss_dssp             ---CCSEEEEEE-TTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGCHHH
T ss_pred             CCCCcceEEEEE-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcccchhH
Confidence            445678999997 899999999999999999999999999999999999999999999999999999998865422111 


Q ss_pred             ---cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           83 ---VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        83 ---~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                         ....+++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus       108 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~  171 (287)
T 2vx2_A          108 HAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCS  171 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCc
Confidence               1123456778899999999999999999999999999999999999999999999998764

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=4.6e-39  Score=242.87  Aligned_cols=135  Identities=21%  Similarity=0.366  Sum_probs=120.0

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc---Cc
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG---DV   83 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~---~~   83 (145)
                      ++.|.++++ ++|++|+||||+++|+||.+|+++|.++++++  ++++|+|||+|.|+.||+|.|++++......   ..
T Consensus        15 ~~~v~~~~~-~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   91 (275)
T 3hin_A           15 PSTLVVDTV-GPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELRERDATEGLVH   91 (275)
T ss_dssp             GGGEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEESSSCSBCCBCGGGCCCCCHHHHHHH
T ss_pred             CCeEEEEEE-CCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECCCCCccCCCCHHHHhccChhhHHHH
Confidence            577999997 99999999999999999999999999999999  5799999999999999999999987542111   11


Q ss_pred             ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           84 KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      ...+++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        92 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  152 (275)
T 3hin_A           92 SQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGG  152 (275)
T ss_dssp             HHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCS
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCc
Confidence            2344677888999999999999999999999999999999999999999999999987764

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=6.5e-39  Score=243.57  Aligned_cols=141  Identities=29%  Similarity=0.430  Sum_probs=119.9

Q ss_pred             CCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhccc-
Q 032207            4 TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKG-   81 (145)
Q Consensus         4 ~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~-   81 (145)
                      +..++.|.+++++++|++|+||||+++|+||.+|+++|.+++++++.|+++|+|||||.| +.||+|+|++++...... 
T Consensus        23 ~~~~~~v~~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~  102 (289)
T 3t89_A           23 SEGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYK  102 (289)
T ss_dssp             CTTCSSEEEEEETTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC---------
T ss_pred             CCCCCeEEEEEecCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccch
Confidence            445778999985478999999999999999999999999999999999999999999999 599999999987542111 


Q ss_pred             ----CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeee-ecCCC
Q 032207           82 ----DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLV-CKISC  144 (145)
Q Consensus        82 ----~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G-~~~g~  144 (145)
                          ......+++++++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++| +|++.
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~  170 (289)
T 3t89_A          103 DDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGW  170 (289)
T ss_dssp             -------CTHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCST
T ss_pred             hhhHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCch
Confidence                1112356778899999999999999999999999999999999999999999999999 77664

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=9.5e-39  Score=238.18  Aligned_cols=133  Identities=23%  Similarity=0.404  Sum_probs=118.0

Q ss_pred             EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc-CCCcccccCCchhhhhhcccC----cc
Q 032207           10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG-SGRAFCSGVDLTSAEDVFKGD----VK   84 (145)
Q Consensus        10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g-~g~~F~~G~dl~~~~~~~~~~----~~   84 (145)
                      +.++++ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||+| .|+.||+|.|++++.......    ..
T Consensus         2 v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~   80 (250)
T 2a7k_A            2 VFEENS-DEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWI   80 (250)
T ss_dssp             EEEEEE-TTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHH
T ss_pred             eEEEee-CCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcCchhhHHHHH
Confidence            567776 899999999999999999999999999999999999999999999 899999999999875432111    11


Q ss_pred             cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           85 DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      ...++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+
T Consensus        81 ~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~  139 (250)
T 2a7k_A           81 DRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCS  139 (250)
T ss_dssp             HHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCH
T ss_pred             HHHHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCC
Confidence            23456778899999999999999999999999999999999999999999999998764

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=2.1e-39  Score=243.63  Aligned_cols=140  Identities=24%  Similarity=0.363  Sum_probs=122.2

Q ss_pred             CCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc--
Q 032207            4 TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG--   81 (145)
Q Consensus         4 ~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~--   81 (145)
                      +.+++.+.++++ ++|++|+||||+++|+||.+|+++|.++++++++|+++|+|||||.|+.||+|.|++++......  
T Consensus         5 m~~~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~   83 (265)
T 3swx_A            5 MSDYETLRIRRD-GYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGA   83 (265)
T ss_dssp             --CCSSEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC--C
T ss_pred             CCCCceEEEEEE-CCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccchh
Confidence            445788999997 99999999999999999999999999999999999999999999999999999999998654321  


Q ss_pred             -CcccHHHHHHHHH-hcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           82 -DVKDVETDTVAQM-ERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        82 -~~~~~~~~~~~~l-~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                       .......+.+.++ .++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        84 ~~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~  148 (265)
T 3swx_A           84 SLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFG  148 (265)
T ss_dssp             CCCCTTCCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCS
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCc
Confidence             1122234456677 89999999999999999999999999999999999999999999987753

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=6.8e-39  Score=241.92  Aligned_cols=138  Identities=27%  Similarity=0.461  Sum_probs=120.7

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc-c---C
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK-G---D   82 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~-~---~   82 (145)
                      ++.+.+++++++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||+|.|+.||+|+|++++..... .   .
T Consensus         2 ~~~v~~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~   81 (275)
T 1dci_A            2 YESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDD   81 (275)
T ss_dssp             CSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSS
T ss_pred             CceEEEEEcCCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccch
Confidence            46788887447899999999999999999999999999999999999999999999999999999998764311 0   1


Q ss_pred             c----------ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           83 V----------KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        83 ~----------~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      .          ...+++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  153 (275)
T 1dci_A           82 VARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADV  153 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCS
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCc
Confidence            0          1123456778899999999999999999999999999999999999999999999987764

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=5.4e-39  Score=241.82  Aligned_cols=136  Identities=25%  Similarity=0.378  Sum_probs=120.1

Q ss_pred             CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhc----c-c-
Q 032207            8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVF----K-G-   81 (145)
Q Consensus         8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~----~-~-   81 (145)
                      +.+.++.+ ++|++|+||||+++|+||.+|+++|.+++++++.|+++|+|||+|.|+.||+|.|++++....    . . 
T Consensus         3 ~~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   81 (269)
T 1nzy_A            3 EAIGHRVE-DGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDH   81 (269)
T ss_dssp             SSEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHH
T ss_pred             ceEEEEEE-CCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccChHHH
Confidence            45888887 899999999999999999999999999999999999999999999999999999999864321    0 0 


Q ss_pred             --CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           82 --DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        82 --~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                        .....+++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        82 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~  146 (269)
T 1nzy_A           82 FRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDT  146 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCT
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCc
Confidence              111224567788999999999999999999999999999999999999999999999987763

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=6.2e-39  Score=240.84  Aligned_cols=135  Identities=28%  Similarity=0.515  Sum_probs=115.5

Q ss_pred             CCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcc
Q 032207            5 KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVK   84 (145)
Q Consensus         5 ~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~   84 (145)
                      .+++.|.++++ ++|++|+||||+++|+||.+|+++|.++++++++| ++|+|||||.|+.||+|.|++...  ......
T Consensus        18 ~~~~~i~~~~~-~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~~--~~~~~~   93 (264)
T 3he2_A           18 GPGSMIGITQA-EAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGDA--FAADYP   93 (264)
T ss_dssp             ----CEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTCT--TGGGHH
T ss_pred             CCCCeEEEEEE-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCccch--hhHHHH
Confidence            34678999997 99999999999999999999999999999999988 999999999999999999998311  111223


Q ss_pred             cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           85 DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      +.+++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+
T Consensus        94 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~  152 (264)
T 3he2_A           94 DRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALD  152 (264)
T ss_dssp             HHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCC
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCc
Confidence            44567788999999999999999999999999999999999999999999999998775

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=1.2e-38  Score=241.12  Aligned_cols=136  Identities=25%  Similarity=0.367  Sum_probs=117.1

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCc---
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDV---   83 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~---   83 (145)
                      ++.+.++++ ++|++|+||||+++|+||.+|+++|.++++++++|+++|+|||+|.|+.||+|.|++++........   
T Consensus        19 ~~~v~~~~~-~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~   97 (279)
T 3t3w_A           19 EMYIDYDVS-DRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTLEF   97 (279)
T ss_dssp             CCSEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCHHH
T ss_pred             CCeEEEEEE-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccchHH
Confidence            578999997 9999999999999999999999999999999999999999999999999999999998765322110   


Q ss_pred             -----ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           84 -----KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        84 -----~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                           ...+.++++++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+|++
T Consensus        98 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~~~  162 (279)
T 3t3w_A           98 IYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDIGGV  162 (279)
T ss_dssp             HHHHHHHHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTCSSC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCCCCc
Confidence                 112345677899999999999999999999999999999999999999999999999753

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=1.5e-38  Score=240.34  Aligned_cols=135  Identities=24%  Similarity=0.401  Sum_probs=121.5

Q ss_pred             CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc---Ccc
Q 032207            8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG---DVK   84 (145)
Q Consensus         8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~---~~~   84 (145)
                      +.|.++.+ ++|++|+||||++ |+||.+|+.+|.++++++++|+++|+|||+|.|+.||+|.|++++......   ...
T Consensus        24 ~~v~~~~~-~~Va~ItlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~  101 (277)
T 4di1_A           24 EFVSVVAD-QGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNAPEADTAA  101 (277)
T ss_dssp             CSEEEEEE-TTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTCCHHHHHHHH
T ss_pred             ceEEEEEE-CCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcccccccChHHHHHHH
Confidence            57899997 9999999999998 999999999999999999999999999999999999999999997653221   112


Q ss_pred             cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           85 DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      ..+++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus       102 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~  161 (277)
T 4di1_A          102 RVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGG  161 (277)
T ss_dssp             HHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCT
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCc
Confidence            344667888999999999999999999999999999999999999999999999987764

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=2.5e-39  Score=243.98  Aligned_cols=140  Identities=29%  Similarity=0.441  Sum_probs=123.8

Q ss_pred             CCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc--
Q 032207            4 TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG--   81 (145)
Q Consensus         4 ~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~--   81 (145)
                      .++++.|.+++++++|++|+||||+ +|++|.+|+++|.++++++++|+++|+|||||.|+.||+|.|++++......  
T Consensus         9 ~~~~~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~   87 (272)
T 3qk8_A            9 YQDFPSLRFEPGEHGVLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYE   87 (272)
T ss_dssp             GGGCTTEEEEECSTTEEEEEECCHH-HHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHHCHH
T ss_pred             CCCCCeEEEEEeCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccccchH
Confidence            3456889999974589999999999 9999999999999999999999999999999999999999999987653221  


Q ss_pred             ---CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           82 ---DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        82 ---~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                         ......++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        88 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  153 (272)
T 3qk8_A           88 GRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGD  153 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCS
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCc
Confidence               112334567888999999999999999999999999999999999999999999999987763

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=8e-39  Score=241.60  Aligned_cols=137  Identities=27%  Similarity=0.375  Sum_probs=117.9

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc-----CC-CcccccCCchhhhhhc
Q 032207            6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG-----SG-RAFCSGVDLTSAEDVF   79 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g-----~g-~~F~~G~dl~~~~~~~   79 (145)
                      +++.+.++.+ ++|++|+||||+++|+||.+|+++|.++++++++|+++|+|||||     .| +.||+|.|++++....
T Consensus         8 ~~~~v~~~~~-~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~   86 (275)
T 4eml_A            8 HYDDILYYKA-GGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGG   86 (275)
T ss_dssp             ECSSEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC------
T ss_pred             CCceEEEEEE-CCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhccc
Confidence            5678999997 999999999999999999999999999999999999999999999     88 5999999999875421


Q ss_pred             cc----CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeee-ecCC
Q 032207           80 KG----DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLV-CKIS  143 (145)
Q Consensus        80 ~~----~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G-~~~g  143 (145)
                      ..    ......+++++++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++| +|++
T Consensus        87 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~  155 (275)
T 4eml_A           87 YIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGG  155 (275)
T ss_dssp             --------CCCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCS
T ss_pred             ccchhhHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCc
Confidence            11    1112346778899999999999999999999999999999999999999999999998 5554

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=8.6e-39  Score=240.26  Aligned_cols=139  Identities=26%  Similarity=0.430  Sum_probs=114.2

Q ss_pred             CCCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc-c
Q 032207            3 QTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK-G   81 (145)
Q Consensus         3 ~~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~-~   81 (145)
                      .+++++.|.++++ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||||.|+.||+|.|++ ...... .
T Consensus         4 ~m~~~~~v~~~~~-~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~~~~~~   81 (265)
T 3rsi_A            4 SMSAARELLVERD-GPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLS-DGWMVRDG   81 (265)
T ss_dssp             -----CCEEEEEE-TTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC------------
T ss_pred             CCCCCCcEEEEEE-CCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCC-cccccchH
Confidence            3556788999997 999999999999999999999999999999999999999999999999999999998 221111 0


Q ss_pred             CcccHHHH-HHHHH-h--cCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           82 DVKDVETD-TVAQM-E--RCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        82 ~~~~~~~~-~~~~l-~--~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      ......++ ++.++ .  ++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+
T Consensus        82 ~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~  147 (265)
T 3rsi_A           82 SAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPG  147 (265)
T ss_dssp             ---CCCHHHHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCT
T ss_pred             HHHHHhHHHHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCC
Confidence            11122345 77888 8  999999999999999999999999999999999999999999998875

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=1.9e-38  Score=239.31  Aligned_cols=139  Identities=32%  Similarity=0.419  Sum_probs=119.2

Q ss_pred             CCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCC-cccccCCchhhhhhccc--
Q 032207            5 KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGR-AFCSGVDLTSAEDVFKG--   81 (145)
Q Consensus         5 ~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~-~F~~G~dl~~~~~~~~~--   81 (145)
                      ..++.+.++++ ++|++|+||||+++|+||.+|+++|.++++++++|+++|+|||||.|+ .||+|+|++++......  
T Consensus        10 ~~~~~i~~~~~-~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~   88 (273)
T 2uzf_A           10 REYDEIKYEFY-EGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGE   88 (273)
T ss_dssp             BCCSSEEEEEE-TTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC--------CC
T ss_pred             CCCceEEEEEE-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccccchh
Confidence            45677999987 899999999999999999999999999999999999999999999998 99999999987541111  


Q ss_pred             C-c-ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           82 D-V-KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        82 ~-~-~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      . . ....++++..+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        89 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  153 (273)
T 2uzf_A           89 DQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAG  153 (273)
T ss_dssp             SSSCCCTHHHHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCS
T ss_pred             hhHHHhhHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCch
Confidence            1 1 1124577888999999999999999999999999999999999999999999999987753

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=1.1e-38  Score=238.42  Aligned_cols=140  Identities=19%  Similarity=0.293  Sum_probs=119.8

Q ss_pred             CCCCCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc
Q 032207            1 MGQTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK   80 (145)
Q Consensus         1 m~~~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~   80 (145)
                      |+.+.+. .+.++++ ++|++|+||||+++|++|.+|+++|.++++++++ +++|+|||+|.|+.||+|+|++++.....
T Consensus         1 ms~~~~~-~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g~~F~aG~Dl~~~~~~~~   77 (254)
T 3isa_A            1 MSLSASL-PLAIERR-PAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAGRNFSAGFDFTDYETQSE   77 (254)
T ss_dssp             ---CCCC-SEEEEEC-SSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEESTTCSCCCBCCTTCTTSCH
T ss_pred             CCCCCCc-eEEEEEE-CCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCCCceeeCcChHHhhccCc
Confidence            5544333 3899987 9999999999999999999999999999999987 58999999999999999999998754322


Q ss_pred             cCc---ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           81 GDV---KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        81 ~~~---~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      ...   ....++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.||
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~pg  143 (254)
T 3isa_A           78 GDLLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVLG  143 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCS
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccHH
Confidence            111   123456778999999999999999999999999999999999999999999999999875

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=7.4e-39  Score=240.42  Aligned_cols=137  Identities=26%  Similarity=0.483  Sum_probs=121.7

Q ss_pred             CCCcEEEEEcCCc-EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC-c
Q 032207            6 SENLILVTRDPMG-IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD-V   83 (145)
Q Consensus         6 ~~~~i~~~~~~~~-v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~-~   83 (145)
                      +++.+.++.+ ++ |++|+||||+++|+||.+|+++|.++++++++|+++|+|||||.|+.||+|.|++++....... .
T Consensus         7 ~~~~i~~~~~-~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   85 (263)
T 3moy_A            7 TYTTIATSRP-VAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQAR   85 (263)
T ss_dssp             CCSSEEEECC-STTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTCCHHHHH
T ss_pred             CCCeEEEEEe-CCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhccCchhHH
Confidence            4677999987 66 9999999999999999999999999999999999999999999999999999999875432111 1


Q ss_pred             ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           84 KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      .+.++++++++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus        86 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~  145 (263)
T 3moy_A           86 ERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPG  145 (263)
T ss_dssp             HTTTTHHHHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCS
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCc
Confidence            223456788999999999999999999999999999999999999999999999988765

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=1.1e-38  Score=241.27  Aligned_cols=138  Identities=17%  Similarity=0.225  Sum_probs=120.3

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc-c---
Q 032207            6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK-G---   81 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~-~---   81 (145)
                      .++.+.++++ ++|++|+||||+++|+||.+|+++|.+++++++.|+++|+|||||.|+.||+|+|++++..... .   
T Consensus         7 ~~~~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~   85 (280)
T 1pjh_A            7 QNEKISYRIE-GPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNK   85 (280)
T ss_dssp             CBTTEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------C
T ss_pred             cCCceEEEEE-CCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhcccccccc
Confidence            4678999997 8999999999999999999999999999999999999999999999999999999998753211 0   


Q ss_pred             --Ccc--------cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEe-CCcEEeccceeeeecCCC
Q 032207           82 --DVK--------DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAA-KGAKFIDTHARLVCKISC  144 (145)
Q Consensus        82 --~~~--------~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~-~~a~f~~pe~~~G~~~g~  144 (145)
                        ...        ...++++.++.++|||+||+|||+|+|||++|+++||+|||+ ++++|++||+++|+.|+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~  159 (280)
T 1pjh_A           86 YPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEG  159 (280)
T ss_dssp             CSSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCT
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCc
Confidence              100        011456778999999999999999999999999999999999 999999999999987753

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.5e-38  Score=238.90  Aligned_cols=142  Identities=20%  Similarity=0.283  Sum_probs=123.0

Q ss_pred             CCC-CCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc-CCCcccccCCchhhhhh
Q 032207            1 MGQ-TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG-SGRAFCSGVDLTSAEDV   78 (145)
Q Consensus         1 m~~-~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g-~g~~F~~G~dl~~~~~~   78 (145)
                      |+. ...++.+.++.+ ++|++|+|||| ++|++|.+|+++|.++++++++|+++|+|||+| .|+.||+|+|++++...
T Consensus         1 ~~~~~~~~~~i~~~~~-~~v~~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~   78 (265)
T 2ppy_A            1 MTAVETKKQYLTVFKE-DGIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRSA   78 (265)
T ss_dssp             -CCEEEECSSEEEEEE-TTEEEEEECSS-TTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTTS
T ss_pred             CCccCCCCCeEEEEee-CCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhcc
Confidence            443 344678999987 89999999999 899999999999999999999999999999999 89999999999987541


Q ss_pred             ccc--CcccHH-HHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCc-EEeccceeeeecCCC
Q 032207           79 FKG--DVKDVE-TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGA-KFIDTHARLVCKISC  144 (145)
Q Consensus        79 ~~~--~~~~~~-~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a-~f~~pe~~~G~~~g~  144 (145)
                      ...  ...+.+ ++++.++.++|||+||+|||+|+|||++|+++||+|||++++ +|++||+++|+.|+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~  148 (265)
T 2ppy_A           79 DPRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGT  148 (265)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTT
T ss_pred             chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCc
Confidence            100  112234 667788999999999999999999999999999999999999 999999999987753

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=2.7e-38  Score=237.06  Aligned_cols=135  Identities=24%  Similarity=0.383  Sum_probs=119.5

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEc-CC-CcccccCCchhhhhhccc--C
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSG-SG-RAFCSGVDLTSAEDVFKG--D   82 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g-~g-~~F~~G~dl~~~~~~~~~--~   82 (145)
                      ++.+.++.+ ++|++|+||||+++|++|.+|+++|.++++++++|+ +|+|||+| .| +.||+|.|++++......  .
T Consensus         3 ~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~~~   80 (261)
T 1ef8_A            3 YQYVNVVTI-NKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDPLS   80 (261)
T ss_dssp             CSSEEEEEE-TTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CTTC
T ss_pred             cceEEEEEe-CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchhHH
Confidence            467899997 899999999999999999999999999999999999 99999999 98 999999999986542211  1


Q ss_pred             cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           83 VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      ....+++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus        81 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~  141 (261)
T 1ef8_A           81 YDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYN  141 (261)
T ss_dssp             TTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCC
Confidence            2234577888999999999999999999999999999999999999999999999998775

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=3.8e-39  Score=241.85  Aligned_cols=136  Identities=28%  Similarity=0.375  Sum_probs=118.7

Q ss_pred             CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcc-cH
Q 032207            8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVK-DV   86 (145)
Q Consensus         8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~-~~   86 (145)
                      +.|.++++ ++|++|+||||+++|+||.+|+.+|.++++++++|+++|+|||||.|+.||+|.|++++......... ..
T Consensus        11 ~~v~~~~~-~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   89 (262)
T 3r9q_A           11 PAVRVEKA-GPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNELHPHG   89 (262)
T ss_dssp             CSEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCCCCTTS
T ss_pred             CEEEEEEE-CCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhhHHHhh
Confidence            45899997 99999999999999999999999999999999999999999999999999999999987654332111 11


Q ss_pred             HHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           87 ETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        87 ~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      .......+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|+.
T Consensus        90 ~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  147 (262)
T 3r9q_A           90 PGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLID  147 (262)
T ss_dssp             SCTTSSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCS
T ss_pred             hhHHHHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCc
Confidence            1223345679999999999999999999999999999999999999999999988764

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=1.5e-38  Score=240.66  Aligned_cols=137  Identities=27%  Similarity=0.390  Sum_probs=118.1

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC---
Q 032207            6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD---   82 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~---   82 (145)
                      .++.+.++++ ++|++|+||||+++|++|.+|+++|.++++++++|+++ +|||+|.|+.||+|+|++++.......   
T Consensus        24 ~~~~i~~~~~-~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~  101 (280)
T 2f6q_A           24 GFETLVVTSE-DGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEE  101 (280)
T ss_dssp             ECSSEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHH
T ss_pred             CCCeEEEEEE-CCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCcchhhH
Confidence            4677999987 89999999999999999999999999999999999999 999999999999999999875422111   


Q ss_pred             ----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           83 ----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        83 ----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                          ....+++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~  167 (280)
T 2f6q_A          102 KAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEG  167 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCT
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcc
Confidence                11234567788999999999999999999999999999999999999999999999987753

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=1.8e-38  Score=238.70  Aligned_cols=136  Identities=26%  Similarity=0.427  Sum_probs=115.5

Q ss_pred             CcEEEE----EcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc-C
Q 032207            8 NLILVT----RDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG-D   82 (145)
Q Consensus         8 ~~i~~~----~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~-~   82 (145)
                      +.+.++    .+ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||||.|+.||+|.|++++...... .
T Consensus         7 ~~v~~~~~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~   85 (267)
T 3oc7_A            7 ALVDYAGPAATG-GPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPSS   85 (267)
T ss_dssp             SSEEEECHHHHS-SSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC-----------C
T ss_pred             cccCCCCcccee-CCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccCchh
Confidence            567777    65 89999999999999999999999999999999999999999999999999999999987621111 1


Q ss_pred             -------cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           83 -------VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        83 -------~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                             .....++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~  154 (267)
T 3oc7_A           86 AYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAI  154 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTT
T ss_pred             hhhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcch
Confidence                   12344667888999999999999999999999999999999999999999999999987763

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=1.2e-38  Score=236.87  Aligned_cols=134  Identities=21%  Similarity=0.340  Sum_probs=117.9

Q ss_pred             CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHH
Q 032207            8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVE   87 (145)
Q Consensus         8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   87 (145)
                      +...++.+ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||||.|+.||+|.|++++........  ..
T Consensus         3 ~~~~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~--~~   79 (243)
T 2q35_A            3 VVQLTELG-NGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTRGEV--EV   79 (243)
T ss_dssp             SEEEEEEE-TTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHHTTCC--CC
T ss_pred             eeEEEEee-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhccchhh--HH
Confidence            34455665 8999999999999999999999999999999999999999999999999999999998754322111  12


Q ss_pred             HHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           88 TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        88 ~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      ++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        80 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  136 (243)
T 2q35_A           80 LDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVG  136 (243)
T ss_dssp             CCCHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCS
T ss_pred             HHHHHHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcc
Confidence            456788999999999999999999999999999999999999999999999987764

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=1.8e-38  Score=239.92  Aligned_cols=137  Identities=34%  Similarity=0.573  Sum_probs=120.1

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC-c-
Q 032207            6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD-V-   83 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~-~-   83 (145)
                      +++.|.++++ ++|++|+||||+++|+||.+|+++|.++++++++|+++|+|||+|.|+.||+|.|++++....... . 
T Consensus        23 ~~~~v~~~~~-~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~  101 (278)
T 3h81_A           23 TYETILVERD-QRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFT  101 (278)
T ss_dssp             CCSSEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCHHHHHH
T ss_pred             CCCeEEEEEE-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhccChhhHHH
Confidence            3567999997 899999999999999999999999999999999999999999999999999999999876432111 0 


Q ss_pred             ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           84 KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      ...... +.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus       102 ~~~~~~-~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~  161 (278)
T 3h81_A          102 ADFFAT-WGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGM  161 (278)
T ss_dssp             HTTTGG-GHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCS
T ss_pred             HHHHHH-HHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCc
Confidence            011122 678999999999999999999999999999999999999999999999987753

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=1.9e-38  Score=238.12  Aligned_cols=135  Identities=26%  Similarity=0.446  Sum_probs=116.2

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhc---cc--
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVF---KG--   81 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~---~~--   81 (145)
                      ++.+.++..+++|++|+||||++ |++|.+|+++|.++++++++|+++|+|||||.|+.||+|.|++++....   ..  
T Consensus         5 ~~~~~~~~~~~~v~~itlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   83 (263)
T 3l3s_A            5 QDGLLGEVLSEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGR   83 (263)
T ss_dssp             ---CEEEEESSSEEEEEECSTTT-CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSH
T ss_pred             ccceEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccH
Confidence            44566666458999999999998 9999999999999999999999999999999999999999999876431   00  


Q ss_pred             ----CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecC
Q 032207           82 ----DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKI  142 (145)
Q Consensus        82 ----~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~  142 (145)
                          .....+++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.+
T Consensus        84 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~  148 (263)
T 3l3s_A           84 AFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGFC  148 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSCC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCCC
Confidence                1122345678889999999999999999999999999999999999999999999998874

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=2.4e-38  Score=244.58  Aligned_cols=137  Identities=26%  Similarity=0.383  Sum_probs=113.8

Q ss_pred             CCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC--
Q 032207            5 KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD--   82 (145)
Q Consensus         5 ~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~--   82 (145)
                      .+++.|.++++ ++|++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.|+.||+|.|++++.......  
T Consensus        32 ~~~~~i~~e~~-~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~  110 (333)
T 3njd_A           32 DNLKTMTYEVT-DRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAGG  110 (333)
T ss_dssp             TSCSSEEEEEE-TTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC-------------
T ss_pred             CCCCeEEEEEE-CCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhhccccccc
Confidence            45678999997 999999999999999999999999999999999999999999999999999999999875432110  


Q ss_pred             -------------------------------cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEE
Q 032207           83 -------------------------------VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF  131 (145)
Q Consensus        83 -------------------------------~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f  131 (145)
                                                     ....+++.+..|.++|||+||+|||+|+|||++|+++||+|||+++++|
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a~f  190 (333)
T 3njd_A          111 GSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAKI  190 (333)
T ss_dssp             --CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTCEE
T ss_pred             ccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCCee
Confidence                                           0112234566788999999999999999999999999999999999999


Q ss_pred             eccceeeeecC
Q 032207          132 IDTHARLVCKI  142 (145)
Q Consensus       132 ~~pe~~~G~~~  142 (145)
                      ++||+++|..|
T Consensus       191 ~~pe~~lG~~P  201 (333)
T 3njd_A          191 GYPPMRVWGVP  201 (333)
T ss_dssp             ECGGGGTTCCC
T ss_pred             echhhceeccC
Confidence            99999994433

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=7.5e-39  Score=241.60  Aligned_cols=135  Identities=27%  Similarity=0.499  Sum_probs=114.2

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc------
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK------   80 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~------   80 (145)
                      ++.|.++.+ ++|++|+||||+++|+||.+|+++|.++++++++|+++|+|||+|.|+.||+|.|++++.....      
T Consensus        10 ~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   88 (274)
T 3tlf_A           10 FDTIKYEVD-GHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERP   88 (274)
T ss_dssp             CSSEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------C
T ss_pred             CCceEEEEE-CCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccccc
Confidence            357999997 9999999999999999999999999999999999999999999999999999999998765332      


Q ss_pred             -cCcc---cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecC
Q 032207           81 -GDVK---DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKI  142 (145)
Q Consensus        81 -~~~~---~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~  142 (145)
                       ....   ..+++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|
T Consensus        89 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p  154 (274)
T 3tlf_A           89 YLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA  154 (274)
T ss_dssp             TTCSGGGGSCCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc
Confidence             1111   1234556778999999999999999999999999999999999999999999998876

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=8e-39  Score=241.90  Aligned_cols=137  Identities=34%  Similarity=0.464  Sum_probs=108.3

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCccc
Q 032207            6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKD   85 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~   85 (145)
                      .++.+.++++ ++|++|+||||+++|+||.+|+++|.++++++++|+++|+|||+|.|+.||+|.|++++..........
T Consensus        18 ~~~~v~~~~~-~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~   96 (278)
T 4f47_A           18 SGPDALVEQR-GHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPGDSFK   96 (278)
T ss_dssp             -CCSEEEEEE-TTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC------------------
T ss_pred             CCCceEEEEE-CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccchhhhHH
Confidence            4467999997 999999999999999999999999999999999999999999999999999999999876543221111


Q ss_pred             ---HHHHHHHHHh---cCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           86 ---VETDTVAQME---RCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        86 ---~~~~~~~~l~---~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                         ..++++..+.   ++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus        97 ~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~  160 (278)
T 4f47_A           97 DGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPM  160 (278)
T ss_dssp             ----CTTCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCT
T ss_pred             HHHHHHHHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCC
Confidence               1223344566   999999999999999999999999999999999999999999998775

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=1.8e-38  Score=238.80  Aligned_cols=140  Identities=26%  Similarity=0.349  Sum_probs=117.5

Q ss_pred             CCCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhccc
Q 032207            3 QTKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKG   81 (145)
Q Consensus         3 ~~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~   81 (145)
                      .+.+++.+.++++ ++|++|+||||+++|+||.+|+++|.++++++++|+++|+|||||.| +.||+|.|++++......
T Consensus         4 ~m~~~~~v~~~~~-~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~   82 (267)
T 3r9t_A            4 SMTDAPGALAERR-GNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENL   82 (267)
T ss_dssp             ----CCSEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCC
T ss_pred             CCCCCCcEEEEEE-CCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccch
Confidence            4566788999997 99999999999999999999999999999999999999999999999 699999999998654322


Q ss_pred             Cccc--HH-HHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           82 DVKD--VE-TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        82 ~~~~--~~-~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      ....  .+ ...+ ...++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        83 ~~~~~~~~~~~~~-~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  147 (267)
T 3r9t_A           83 YHPDHPEWGFAGY-VRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAA  147 (267)
T ss_dssp             SCTTCGGGCGGGT-TTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTT
T ss_pred             hhHHHHhHHHHHH-HHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCc
Confidence            1111  11 0112 2238999999999999999999999999999999999999999999987763

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=2.2e-38  Score=236.56  Aligned_cols=132  Identities=29%  Similarity=0.444  Sum_probs=116.9

Q ss_pred             EEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhc---cc-Ccc-
Q 032207           10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVF---KG-DVK-   84 (145)
Q Consensus        10 i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~---~~-~~~-   84 (145)
                      +.++ + ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||+|.|+.||+|+|++++....   .. ... 
T Consensus         2 i~~~-~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~   79 (253)
T 1uiy_A            2 VQVE-K-GHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRH   79 (253)
T ss_dssp             EEEE-C-SSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHH
T ss_pred             EEEE-e-CCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHHHH
Confidence            5667 6 899999999999999999999999999999999999999999999999999999999876531   11 001 


Q ss_pred             cH-HHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           85 DV-ETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        85 ~~-~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      .. .++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus        80 ~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~  139 (253)
T 1uiy_A           80 SLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAA  139 (253)
T ss_dssp             HHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCc
Confidence            01 466778899999999999999999999999999999999999999999999998764

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=6.1e-39  Score=241.09  Aligned_cols=136  Identities=26%  Similarity=0.436  Sum_probs=121.2

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC---c
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD---V   83 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~---~   83 (145)
                      ++.+.++.+ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||+|.|+.||+|.|++++.......   .
T Consensus         6 ~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   84 (265)
T 3qxz_A            6 VTELHEEIR-DGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRNPD   84 (265)
T ss_dssp             CCEEEEEEE-TTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCSSC
T ss_pred             cceEEEEEE-CCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHHHH
Confidence            467899987 999999999999999999999999999999999999999999999999999999999876532221   1


Q ss_pred             ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           84 KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      ... ++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        85 ~~~-~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~  144 (265)
T 3qxz_A           85 FSA-SPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDA  144 (265)
T ss_dssp             CCS-CCSSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCT
T ss_pred             HHH-HHHHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCc
Confidence            122 556678999999999999999999999999999999999999999999999987753

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=5e-38  Score=238.90  Aligned_cols=139  Identities=22%  Similarity=0.389  Sum_probs=119.9

Q ss_pred             CCCCCCcEEEEEcCCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc
Q 032207            3 QTKSENLILVTRDPMGIAYVTIN-RPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG   81 (145)
Q Consensus         3 ~~~~~~~i~~~~~~~~v~~i~l~-~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~   81 (145)
                      ....++.+.++.+ ++|++|+|| ||+++|+||.+|+++|.+++++++.|+. |+|||||.|+.||+|+|++++......
T Consensus        18 ~~~~~~~v~~~~~-~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~G~~FcaG~Dl~~~~~~~~~   95 (291)
T 2fbm_A           18 GSSTYRDIVVKKE-DGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAGSVFCCGLDFGYFVKHLRN   95 (291)
T ss_dssp             ---CCSSEEEEEC-SSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEECSSCSBCCBCHHHHHHHHHH
T ss_pred             CCCCcceEEEEEe-CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECCCCCccCCcCHHHHHhcccc
Confidence            3456778999987 899999999 6999999999999999999999998875 999999999999999999987542111


Q ss_pred             -------CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           82 -------DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        82 -------~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                             .....+++++.++..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~  164 (291)
T 2fbm_A           96 NRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPD  164 (291)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCC
T ss_pred             cchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCc
Confidence                   11123456778899999999999999999999999999999999999999999999998775

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=3.9e-38  Score=236.60  Aligned_cols=135  Identities=25%  Similarity=0.369  Sum_probs=119.7

Q ss_pred             CCCcEEEEE-cCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhh-c-c-c
Q 032207            6 SENLILVTR-DPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDV-F-K-G   81 (145)
Q Consensus         6 ~~~~i~~~~-~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~-~-~-~   81 (145)
                      .++.+.+++ + ++|++|+||||+ +|++|.+|+++|.++++++++|+++|+|||+|.|+.||+|+|++ +... . . .
T Consensus         8 ~~~~v~~~~~~-~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~~~~~~~~   84 (264)
T 1wz8_A            8 RYPGLAFAWPR-PGVLEITFRGEK-LNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFG-LIEEMRASHE   84 (264)
T ss_dssp             HCTTEEEEEEE-TTEEEEEECCSG-GGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHH-HHHHHHHCHH
T ss_pred             CCCeEEEEEcc-CCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccc-cccccccchH
Confidence            346788888 7 899999999999 99999999999999999999999999999999999999999999 6542 1 1 0


Q ss_pred             ---CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           82 ---DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        82 ---~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                         ...+..++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus        85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~  149 (264)
T 1wz8_A           85 ALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAG  149 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCT
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCC
Confidence               11233466788899999999999999999999999999999999999999999999998775

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=6.6e-38  Score=237.72  Aligned_cols=133  Identities=31%  Similarity=0.548  Sum_probs=118.2

Q ss_pred             EEEEEcC-CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc----Ccc
Q 032207           10 ILVTRDP-MGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG----DVK   84 (145)
Q Consensus        10 i~~~~~~-~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~----~~~   84 (145)
                      |.+++++ ++|++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||+|.|+.||+|.|++++......    ...
T Consensus        26 v~~~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~  105 (286)
T 3myb_A           26 LLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSREYYEKLF  105 (286)
T ss_dssp             SEEEEECTTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHSSCCHHHHHHHH
T ss_pred             EEEEEecCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhccccHHHHHHHH
Confidence            7777742 78999999999999999999999999999999999999999999999999999999998652111    112


Q ss_pred             cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecC
Q 032207           85 DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKI  142 (145)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~  142 (145)
                      ..+++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.+
T Consensus       106 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~  163 (286)
T 3myb_A          106 ARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLFC  163 (286)
T ss_dssp             HHHHHHHHHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCCC
Confidence            3346678889999999999999999999999999999999999999999999999873

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=5.6e-38  Score=244.97  Aligned_cols=138  Identities=24%  Similarity=0.399  Sum_probs=120.8

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcc-cC-
Q 032207            6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFK-GD-   82 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~-~~-   82 (145)
                      ..+.+.++++ ++|++|+||||+++|+||.+|+.+|.+++++++.|+++|+|||||.| +.||+|+|++++..... .. 
T Consensus         4 ~~~~v~~~~~-~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~   82 (363)
T 3bpt_A            4 AAEEVLLGKK-GCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQK   82 (363)
T ss_dssp             CCCSEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCC
T ss_pred             CCcceEEEEE-CCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccH
Confidence            3446888887 89999999999999999999999999999999999999999999988 99999999998764321 11 


Q ss_pred             ----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           83 ----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        83 ----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                          ......+++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~  148 (363)
T 3bpt_A           83 IAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDV  148 (363)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCT
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCc
Confidence                11123456778999999999999999999999999999999999999999999999987764

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=1.6e-37  Score=239.76  Aligned_cols=138  Identities=22%  Similarity=0.295  Sum_probs=118.7

Q ss_pred             CCCcEEEEEc-CCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCC-------cccccCCchhhhh
Q 032207            6 SENLILVTRD-PMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGR-------AFCSGVDLTSAED   77 (145)
Q Consensus         6 ~~~~i~~~~~-~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~-------~F~~G~dl~~~~~   77 (145)
                      +++.|.+++. +++|++|+||||+++|+||.+|+++|.+++++++.|+++|+|||||.|+       .||+|+|++++..
T Consensus        53 ~~~~i~~~~~~~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~  132 (334)
T 3t8b_A           53 DLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGR  132 (334)
T ss_dssp             TCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC-
T ss_pred             CCceEEEEEeccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhc
Confidence            3667999874 4899999999999999999999999999999999999999999999995       8999999987642


Q ss_pred             hcc----c----------CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEe-CCcEEeccceeeeecC
Q 032207           78 VFK----G----------DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAA-KGAKFIDTHARLVCKI  142 (145)
Q Consensus        78 ~~~----~----------~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~-~~a~f~~pe~~~G~~~  142 (145)
                      ...    .          .......+++++|..+|||+||+|||+|+|||++|+++||+|||+ ++++|++||+++|+.|
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p  212 (334)
T 3t8b_A          133 SGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFD  212 (334)
T ss_dssp             ---------------------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSS
T ss_pred             ccccccccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCC
Confidence            110    0          011224567788999999999999999999999999999999999 9999999999999766


Q ss_pred             C
Q 032207          143 S  143 (145)
Q Consensus       143 g  143 (145)
                      +
T Consensus       213 ~  213 (334)
T 3t8b_A          213 G  213 (334)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=6e-38  Score=236.49  Aligned_cols=142  Identities=29%  Similarity=0.439  Sum_probs=119.2

Q ss_pred             CCCCCCcEEEEE---cCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhh
Q 032207            3 QTKSENLILVTR---DPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDV   78 (145)
Q Consensus         3 ~~~~~~~i~~~~---~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~   78 (145)
                      .+.+.+.+.+++   .+++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||+|.| +.||+|+|++++...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~   82 (272)
T 1hzd_A            3 EMKTEDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKM   82 (272)
T ss_dssp             ----CCSEEEEECCGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTS
T ss_pred             cccCCCcEEEEecccccCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhcc
Confidence            345556666654   2378999999999999999999999999999999999999999999998 799999999986532


Q ss_pred             ccc---CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           79 FKG---DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        79 ~~~---~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      ...   .....+++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  151 (272)
T 1hzd_A           83 SSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGG  151 (272)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCS
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCc
Confidence            111   111234567788999999999999999999999999999999999999999999999987753

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=1.2e-37  Score=230.24  Aligned_cols=131  Identities=21%  Similarity=0.278  Sum_probs=114.9

Q ss_pred             CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc---Ccc
Q 032207            8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG---DVK   84 (145)
Q Consensus         8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~---~~~   84 (145)
                      +.+.++++ ++|++|+||||+ .|++|.+|+++|.++++++++| ++|+|||||.|+.||+|.|++++......   ...
T Consensus         5 ~~v~~~~~-~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   81 (233)
T 3r6h_A            5 GPVTYTHD-DAIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSGEAKPAIDML   81 (233)
T ss_dssp             CCEEEEEE-TTEEEEEECCSS-SCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCSSEEECCSCHHHHC---CHHHHHHH
T ss_pred             CceEEEEE-CCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCCCCccCCcChHHHhccChHHHHHHH
Confidence            46889987 999999999985 7999999999999999999987 58999999999999999999997653211   112


Q ss_pred             cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeec
Q 032207           85 DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCK  141 (145)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~  141 (145)
                      ...++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.
T Consensus        82 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~  138 (233)
T 3r6h_A           82 RGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMT  138 (233)
T ss_dssp             HHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCC
T ss_pred             HHHHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCC
Confidence            334567888999999999999999999999999999999999999999999999984

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=1e-37  Score=233.94  Aligned_cols=136  Identities=24%  Similarity=0.365  Sum_probs=119.2

Q ss_pred             CCCcEEEEEcCCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc---
Q 032207            6 SENLILVTRDPMGIAYVTIN-RPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG---   81 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~-~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~---   81 (145)
                      .++.+.++++ ++|++|+|| ||+++|+||.+|+++|.++++++++|+. |+|||+|.|+.||+|+|++++......   
T Consensus         3 ~~~~i~~~~~-~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~~-r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~   80 (261)
T 2gtr_A            3 RYRDIVVRKQ-DGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDS-KLVLLSAVGSVFCCGLDFIYFIRRLTDDRK   80 (261)
T ss_dssp             CCSSEEEEEE-TTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSSC-SCEEEEESSSCSBCEECHHHHHHHHHHCHH
T ss_pred             ccceEEEEEe-CCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCCC-EEEEEecCCCccccccCchhhhhccccchh
Confidence            4567899987 899999999 6999999999999999999999998874 999999999999999999987542111   


Q ss_pred             ----CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           82 ----DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        82 ----~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                          .....+++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~  146 (261)
T 2gtr_A           81 RESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPD  146 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCC
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCcc
Confidence                11123456778899999999999999999999999999999999999999999999998775

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=6.8e-38  Score=234.82  Aligned_cols=137  Identities=26%  Similarity=0.491  Sum_probs=117.1

Q ss_pred             CCCcEEEEE---cCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc-
Q 032207            6 SENLILVTR---DPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG-   81 (145)
Q Consensus         6 ~~~~i~~~~---~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~-   81 (145)
                      +++.+.++.   . ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||+|.|+.||+|.|++++...... 
T Consensus         2 ~~~~~~~~~~v~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~   80 (260)
T 1mj3_A            2 NFQYIITEKKGKN-SSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQD   80 (260)
T ss_dssp             CCSSEEEEEESGG-GCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHH
T ss_pred             CcccceeecccCc-CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcccchH
Confidence            456677877   5 78999999999999999999999999999999999999999999999999999999986432110 


Q ss_pred             CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           82 DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      .....+.+.+.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus        81 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~  142 (260)
T 1mj3_A           81 CYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPG  142 (260)
T ss_dssp             HHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCC
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCC
Confidence            00111122356788999999999999999999999999999999999999999999998775

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=6.1e-38  Score=234.63  Aligned_cols=133  Identities=30%  Similarity=0.479  Sum_probs=116.0

Q ss_pred             CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHH
Q 032207            8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVE   87 (145)
Q Consensus         8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   87 (145)
                      +.+.++++ ++|++|+||||+++|++|.+|+++|.++++++++|+++|+|||+|.|+.||+|.|++++...........+
T Consensus         7 ~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   85 (256)
T 3trr_A            7 DEVLIEQR-DRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSERGL   85 (256)
T ss_dssp             CSEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTCCCEETTEE
T ss_pred             CceEEEEE-CCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhccccchhhhhhh
Confidence            46889987 99999999999999999999999999999999999999999999999999999999998653221111111


Q ss_pred             HHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           88 TDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        88 ~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                       . +..+ .+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        86 -~-~~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~  139 (256)
T 3trr_A           86 -G-FTNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGA  139 (256)
T ss_dssp             -T-TSSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCS
T ss_pred             -h-HHHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCc
Confidence             1 2334 8999999999999999999999999999999999999999999987753

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=9e-38  Score=234.73  Aligned_cols=136  Identities=32%  Similarity=0.465  Sum_probs=110.7

Q ss_pred             CCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcc
Q 032207            5 KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVK   84 (145)
Q Consensus         5 ~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~   84 (145)
                      ..++.|.++++ ++|++|+||||+++|+||.+|+++|.++++++++|+++|+|||+|.|+.||+|.|++++.........
T Consensus        12 ~~~~~v~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~   90 (265)
T 3qxi_A           12 DTEPEVLVEQR-DRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENVVVE   90 (265)
T ss_dssp             ---CCEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-------CCCEET
T ss_pred             CCCCeEEEEEE-CCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhhccchhhhh
Confidence            34678999997 99999999999999999999999999999999999999999999999999999999987653321111


Q ss_pred             cHHHHH-HHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           85 DVETDT-VAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        85 ~~~~~~-~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                        .+.+ +..+.. |||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus        91 --~~~~~~~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~  148 (265)
T 3qxi_A           91 --GRGLGFTERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGG  148 (265)
T ss_dssp             --TTEETTTTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCS
T ss_pred             --hhhhhHHHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcc
Confidence              1111 334444 99999999999999999999999999999999999999999987753

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=3.7e-37  Score=230.51  Aligned_cols=136  Identities=24%  Similarity=0.312  Sum_probs=118.6

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc---Cc
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG---DV   83 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~---~~   83 (145)
                      ++.+.++++ ++|++|+||||++.|++|.+|+++|.++++++++|+++|+|||||.|+.||+|.|++++......   ..
T Consensus        15 ~~~i~~~~~-~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~   93 (257)
T 1szo_A           15 YENIRLERD-GGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEI   93 (257)
T ss_dssp             CTTEEEEEE-TTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHHHHH
T ss_pred             CceEEEEEE-CCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhcCCHHHHHHH
Confidence            357999987 89999999999999999999999999999999999999999999999999999999986421100   01


Q ss_pred             ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEec-cceeeeecCCC
Q 032207           84 KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFID-THARLVCKISC  144 (145)
Q Consensus        84 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~-pe~~~G~~~g~  144 (145)
                      ....++++.++..+|||+||+|||+|+ ||++|+++||+|||+++++|++ ||+++|+.|+.
T Consensus        94 ~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~  154 (257)
T 1szo_A           94 IFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGD  154 (257)
T ss_dssp             HHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTT
T ss_pred             HHHHHHHHHHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCc
Confidence            122356678899999999999999999 5999999999999999999999 99999987753

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=2.3e-37  Score=244.33  Aligned_cols=136  Identities=19%  Similarity=0.269  Sum_probs=119.5

Q ss_pred             CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhccc-----
Q 032207            8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKG-----   81 (145)
Q Consensus         8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~-----   81 (145)
                      +.|.++++ ++|++||||||+++|+||.+|+.+|.++++++++|+++|+|||+|.| +.||+|+|++++......     
T Consensus        42 ~~v~~~~~-~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~  120 (407)
T 3ju1_A           42 QTLATASG-KLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQV  120 (407)
T ss_dssp             EEEECTTS-CEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSC
T ss_pred             ceEEEEEE-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhccccccccc
Confidence            45777765 89999999999999999999999999999999999999999999999 899999999987653211     


Q ss_pred             -C----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           82 -D----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        82 -~----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                       .    .....++++.++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus       121 ~~~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~  188 (407)
T 3ju1_A          121 TEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDV  188 (407)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCc
Confidence             0    11223456778999999999999999999999999999999999999999999999987763

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=5e-37  Score=226.70  Aligned_cols=130  Identities=22%  Similarity=0.312  Sum_probs=114.2

Q ss_pred             CcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc--Cccc
Q 032207            8 NLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG--DVKD   85 (145)
Q Consensus         8 ~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~--~~~~   85 (145)
                      +.+.++.+ ++|++|+||||+ .|++|.+|+++|.+++++++.|+  |+|||||.|+.||+|.|++++......  ....
T Consensus         6 ~~v~~~~~-~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~--~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   81 (232)
T 3ot6_A            6 DLVSYHLD-DGVATLTLNNGK-VNAISPDVIIAFNAALDQAEKDR--AIVIVTGQPGILSGGYDLKVMTSSAEAAINLVA   81 (232)
T ss_dssp             HHEEEEEE-TTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHHTT--CEEEEECBTEEEECCBCHHHHHHCHHHHHHHHH
T ss_pred             cceEEEEE-CCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCC--CEEEEECCCCCccCCcCHHHHhhChHHHHHHHH
Confidence            46888987 999999999985 79999999999999999999764  999999999999999999997652111  1123


Q ss_pred             HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCC-cEEeccceeeeec
Q 032207           86 VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG-AKFIDTHARLVCK  141 (145)
Q Consensus        86 ~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~-a~f~~pe~~~G~~  141 (145)
                      ..+++++++.++|||+||+|||+|+|||++|+++||+|||+++ ++|++||+++|+.
T Consensus        82 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~  138 (232)
T 3ot6_A           82 QGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMT  138 (232)
T ss_dssp             HHHHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCC
T ss_pred             HHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCC
Confidence            3456788899999999999999999999999999999999998 8999999999984

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=3.5e-37  Score=231.29  Aligned_cols=137  Identities=24%  Similarity=0.304  Sum_probs=119.7

Q ss_pred             CCCcEEEEEcCC-cEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc---
Q 032207            6 SENLILVTRDPM-GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG---   81 (145)
Q Consensus         6 ~~~~i~~~~~~~-~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~---   81 (145)
                      +++.+.++++ + +|++|+||||++.|++|.+|+++|.++++++++|+++|+|||+|.|+.||+|+|++++......   
T Consensus        21 ~~~~i~~~~~-~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~   99 (263)
T 2j5g_A           21 KYENLHFHRD-ENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREW   99 (263)
T ss_dssp             SCTTEEEEEC-TTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHH
T ss_pred             CCCeEEEEEc-CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhccCCHHHH
Confidence            4567999987 7 9999999999999999999999999999999999999999999999999999999986532111   


Q ss_pred             -CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEec-cceeeeecCCC
Q 032207           82 -DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFID-THARLVCKISC  144 (145)
Q Consensus        82 -~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~-pe~~~G~~~g~  144 (145)
                       ......++++.++.++|||+||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|+.
T Consensus       100 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~  163 (263)
T 2j5g_A          100 DKTYWEGKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGD  163 (263)
T ss_dssp             HHHHHHHHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCS
T ss_pred             HHHHHHHHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCc
Confidence             01122356678899999999999999999 5999999999999999999999 99999987753

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=5.4e-37  Score=229.90  Aligned_cols=133  Identities=20%  Similarity=0.286  Sum_probs=115.4

Q ss_pred             cEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC-CCcccccCCchhhhhhccc---Ccc
Q 032207            9 LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS-GRAFCSGVDLTSAEDVFKG---DVK   84 (145)
Q Consensus         9 ~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~-g~~F~~G~dl~~~~~~~~~---~~~   84 (145)
                      .+.++.+ ++|++|+||||+ .|+||.+|+++|.+++++++.|+++|+|||+|. |+.||+|.|++++......   ...
T Consensus         6 ~v~~~~~-~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~   83 (260)
T 1sg4_A            6 LVEPDAG-AGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYW   83 (260)
T ss_dssp             EEEEETT-TTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHH
T ss_pred             EEEEEec-CCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCHHHHHHHH
Confidence            3555554 889999999997 799999999999999999999999999999999 6999999999986432111   111


Q ss_pred             cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEe--CCcEEeccceeeeecCC
Q 032207           85 DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAA--KGAKFIDTHARLVCKIS  143 (145)
Q Consensus        85 ~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~--~~a~f~~pe~~~G~~~g  143 (145)
                      ..+++++.++.++|||+||+|||+|+|||++|+++||+|||+  ++++|++||+++|+.|+
T Consensus        84 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~  144 (260)
T 1sg4_A           84 KAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAP  144 (260)
T ss_dssp             HHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCc
Confidence            234567788999999999999999999999999999999999  89999999999998875

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=5.9e-36  Score=237.30  Aligned_cols=137  Identities=26%  Similarity=0.309  Sum_probs=117.0

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC--------C-CcccccCCchhhhh
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS--------G-RAFCSGVDLTSAED   77 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~--------g-~~F~~G~dl~~~~~   77 (145)
                      .+.|.++.+ ++|++|+||||+++|+||.+|+++|.+++++++.|+++|+|||||.        | +.||+|.|++++..
T Consensus       166 ~~~v~~e~~-~gVa~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~  244 (440)
T 2np9_A          166 MEAVHLERR-DGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQ  244 (440)
T ss_dssp             CSSEEEEEE-TTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHT
T ss_pred             CceEEEEEE-CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhc
Confidence            356888887 8999999999999999999999999999999999999999999994        6 89999999998764


Q ss_pred             hcccCcc-------cHHHHHHHHH------------hcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceee
Q 032207           78 VFKGDVK-------DVETDTVAQM------------ERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARL  138 (145)
Q Consensus        78 ~~~~~~~-------~~~~~~~~~l------------~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~  138 (145)
                      .......       ..+++++..+            ..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~l  324 (440)
T 2np9_A          245 GGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKE  324 (440)
T ss_dssp             TCCCTTTTHHHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTT
T ss_pred             cCcchhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhcc
Confidence            3211101       1123444443            47999999999999999999999999999999999999999999


Q ss_pred             eecCCC
Q 032207          139 VCKISC  144 (145)
Q Consensus       139 G~~~g~  144 (145)
                      |+.|+.
T Consensus       325 Gl~P~~  330 (440)
T 2np9_A          325 GIIPGA  330 (440)
T ss_dssp             CCCCTT
T ss_pred             CcCcch
Confidence            988764

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=3.9e-35  Score=245.47  Aligned_cols=130  Identities=22%  Similarity=0.411  Sum_probs=117.7

Q ss_pred             EEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHH
Q 032207           11 LVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDT   90 (145)
Q Consensus        11 ~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~   90 (145)
                      .+.+.+|+|++||||||+ .|+||.+|+++|.++++++++|+++|+|||||.|+.||+|+|++++.....   ...++++
T Consensus        23 ~~~~~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aGaDl~~~~~~~~---~~~~~~~   98 (742)
T 3zwc_A           23 EYLRLPHSLAMIRLCNPP-VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTP---GLALGSL   98 (742)
T ss_dssp             EEEECSTTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCSSSCCSSCS---CSHHHHH
T ss_pred             eEEEeeCCEEEEEeCCCc-ccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCccccCcChHhhhccCh---hHHHHHH
Confidence            333434999999999997 799999999999999999999999999999999999999999998754332   3456788


Q ss_pred             HHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           91 VAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        91 ~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      +++|.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|+.||.
T Consensus        99 ~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~  152 (742)
T 3zwc_A           99 VDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGA  152 (742)
T ss_dssp             HHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTT
T ss_pred             HHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCc
Confidence            999999999999999999999999999999999999999999999999988764

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=4.6e-35  Score=223.89  Aligned_cols=138  Identities=15%  Similarity=0.203  Sum_probs=112.3

Q ss_pred             CCcEEEEE-cCCcEEEEEEcCCCC----CCCCCHHHHHHHHHHHHhhcc-----CCCeeEEEEEcCCCcccccCCchhhh
Q 032207            7 ENLILVTR-DPMGIAYVTINRPKS----LNSLTRSMMADMAQAFKSLDK-----DESVLVIILSGSGRAFCSGVDLTSAE   76 (145)
Q Consensus         7 ~~~i~~~~-~~~~v~~i~l~~~~~----~N~l~~~~~~~l~~~l~~~~~-----~~~v~~vvl~g~g~~F~~G~dl~~~~   76 (145)
                      ++.+.+.. .+++|++|+||||+|    +|+|+.+|+.+|.++++++++     |+++|+|||+|.|+.||+|+|++++.
T Consensus        29 y~~i~v~~~~~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~  108 (305)
T 3m6n_A           29 GSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFC  108 (305)
T ss_dssp             CTTEEEEEETTTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHHH
T ss_pred             CceEEEEEEEECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHHH
Confidence            55666643 238899999999988    559999999999999999987     58999999999999999999999876


Q ss_pred             hhcccCc----cc---HHHHHHHHH---hcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           77 DVFKGDV----KD---VETDTVAQM---ERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        77 ~~~~~~~----~~---~~~~~~~~l---~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                      .......    ..   .+.+.+..+   ..+|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+.
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~  186 (305)
T 3m6n_A          109 QLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGM  186 (305)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCS
T ss_pred             hccccccHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCc
Confidence            5422111    11   122223333   46899999999999999999999999999999999999999999987753

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=100.00  E-value=5.2e-35  Score=235.01  Aligned_cols=138  Identities=17%  Similarity=0.261  Sum_probs=121.3

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHhhccC-CCeeEEEEEc-CCCcccccCCch
Q 032207            6 SENLILVTRDPMGIAYVTINRPK----------SLNSLTRSMMADMAQAFKSLDKD-ESVLVIILSG-SGRAFCSGVDLT   73 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~----------~~N~l~~~~~~~l~~~l~~~~~~-~~v~~vvl~g-~g~~F~~G~dl~   73 (145)
                      .++.+.++.+ ++|++|+||||+          +.|+++.+|+.+|.+++++++.| +++|+|||+| .|+.||+|+|++
T Consensus        19 ~~~~v~ve~~-ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~   97 (556)
T 2w3p_A           19 QYKHWKLSFN-GPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIF   97 (556)
T ss_dssp             GCSSEEEEEE-TTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHH
T ss_pred             cCceEEEEee-CCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHH
Confidence            4567899987 899999999998          89999999999999999999999 9999999999 899999999999


Q ss_pred             hhhhhccc---CcccHHHHHHHHH----hcCCccEEEeechhccHHhHHHHHhcCEEEEeCC--cEEecccee-eeecCC
Q 032207           74 SAEDVFKG---DVKDVETDTVAQM----ERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG--AKFIDTHAR-LVCKIS  143 (145)
Q Consensus        74 ~~~~~~~~---~~~~~~~~~~~~l----~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~--a~f~~pe~~-~G~~~g  143 (145)
                      ++......   ......++++.++    .++|||+||+|||+|+|||++|+++||+|||+++  ++|++||++ +|+.|+
T Consensus        98 el~~~~~~~~~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL~Pg  177 (556)
T 2w3p_A           98 MLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPG  177 (556)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSSCCT
T ss_pred             HHhhcccHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccCCCCC
Confidence            87643211   1112345667788    9999999999999999999999999999999999  999999999 998776


Q ss_pred             C
Q 032207          144 C  144 (145)
Q Consensus       144 ~  144 (145)
                      .
T Consensus       178 ~  178 (556)
T 2w3p_A          178 T  178 (556)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=9.7e-34  Score=236.95  Aligned_cols=138  Identities=28%  Similarity=0.341  Sum_probs=120.3

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCC-cccccCCchhhhhhcccC-
Q 032207            6 SENLILVTRDPMGIAYVTINRPK-SLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGR-AFCSGVDLTSAEDVFKGD-   82 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~-~F~~G~dl~~~~~~~~~~-   82 (145)
                      +.+.+.+++.+++|++||||||+ +.|+||.+|+++|.++++++++|+++|+||||| |+ .||+|+|++++....... 
T Consensus         4 ~~~~i~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~   82 (715)
T 1wdk_A            4 EGKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFKLPD   82 (715)
T ss_dssp             ECSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTTSCH
T ss_pred             CCCeEEEEEeeCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcccCCH
Confidence            34678888333899999999998 899999999999999999999999999999999 76 999999999876432111 


Q ss_pred             -----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           83 -----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        83 -----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                           ....++++++++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.||.
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~  149 (715)
T 1wdk_A           83 AELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGF  149 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCc
Confidence                 11235677889999999999999999999999999999999999999999999999988764

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=2.3e-34  Score=240.99  Aligned_cols=137  Identities=22%  Similarity=0.352  Sum_probs=112.4

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCC-cccccCCchhhhhhcc----
Q 032207            6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGR-AFCSGVDLTSAEDVFK----   80 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~-~F~~G~dl~~~~~~~~----   80 (145)
                      +++.+.+++.+++|++|||||| +.|+||.+|+++|.++++++++|+++|+||||| |+ .||+|+|++++.....    
T Consensus         5 ~~~~i~~~~~~~~va~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~   82 (725)
T 2wtb_A            5 TKGKTVMEVGGDGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKGNVK   82 (725)
T ss_dssp             --CEEEEEECTTSEEEEEEECT-TTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC------------
T ss_pred             cCCeEEEEEeeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccchhhh
Confidence            4567888833489999999999 799999999999999999999999999999999 75 9999999998754221    


Q ss_pred             --cCcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           81 --GDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        81 --~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                        .......+++++++.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.||.
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~  148 (725)
T 2wtb_A           83 EPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGF  148 (725)
T ss_dssp             CCSSSHHHHHCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCS
T ss_pred             hHHHHHHHHHHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCc
Confidence              1111233445567889999999999999999999999999999999999999999999988764

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.73  E-value=2.1e-17  Score=122.17  Aligned_cols=108  Identities=17%  Similarity=0.200  Sum_probs=87.1

Q ss_pred             CcEEEEEEcCCCCCCCCCHH-------HHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHH
Q 032207           17 MGIAYVTINRPKSLNSLTRS-------MMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETD   89 (145)
Q Consensus        17 ~~v~~i~l~~~~~~N~l~~~-------~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~   89 (145)
                      ++|++|.++.+-..+.-...       .+++|.++|+++++|+++|+|||++.    |.|+|+...         ..+.+
T Consensus         3 ~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~----s~Gg~~~~~---------~~i~~   69 (240)
T 3rst_A            3 SKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN----SPGGGVYES---------AEIHK   69 (240)
T ss_dssp             CEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE----ECCBCHHHH---------HHHHH
T ss_pred             CeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec----CCCCCHHHH---------HHHHH
Confidence            67999999976422210111       36899999999999999999999986    568887653         23456


Q ss_pred             HHHHHhc-CCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEecccee
Q 032207           90 TVAQMER-CRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHAR  137 (145)
Q Consensus        90 ~~~~l~~-~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~  137 (145)
                      .++++.. ++||+||+++|.|.|+|+.|+++||+|+|++++.|+.+.+.
T Consensus        70 ~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~  118 (240)
T 3rst_A           70 KLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVI  118 (240)
T ss_dssp             HHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCE
T ss_pred             HHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEecccee
Confidence            6777777 89999999999999999999999999999999999999654

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.73  E-value=2.6e-18  Score=141.28  Aligned_cols=109  Identities=18%  Similarity=0.172  Sum_probs=96.2

Q ss_pred             CCcEEEEEEcCCCCCCC--CCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHH
Q 032207           16 PMGIAYVTINRPKSLNS--LTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQ   93 (145)
Q Consensus        16 ~~~v~~i~l~~~~~~N~--l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~   93 (145)
                      +++|++|++++|.+.|+  ++..+.++|.++|+++++|+++|+|||++.+    .|+|+...         ...++.+++
T Consensus       300 ~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s----pGG~~~~~---------~~i~~~i~~  366 (593)
T 3bf0_A          300 GDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS----PGGSVTAS---------EVIRAELAA  366 (593)
T ss_dssp             SCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE----EEECHHHH---------HHHHHHHHH
T ss_pred             CCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC----CCCCHHHH---------HHHHHHHHH
Confidence            37899999999988888  6888999999999999999999999999974    47777642         234566778


Q ss_pred             HhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEecccee
Q 032207           94 MERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHAR  137 (145)
Q Consensus        94 l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~  137 (145)
                      +..++||+|++++|.|.|||+.|+++||+++|++++.|+.+++.
T Consensus       367 l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~  410 (593)
T 3bf0_A          367 ARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIF  410 (593)
T ss_dssp             HHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEE
T ss_pred             HHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeE
Confidence            88899999999999999999999999999999999999999863

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.64  E-value=2.1e-15  Score=110.69  Aligned_cols=102  Identities=18%  Similarity=0.210  Sum_probs=88.5

Q ss_pred             CCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHh
Q 032207           16 PMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQME   95 (145)
Q Consensus        16 ~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~   95 (145)
                      .+.|++|+++     ++++..+.++|.+.|+.++++ ++|+|+|+..    |.|+++..            ...++..|.
T Consensus         7 ~~~V~vI~i~-----g~I~~~~~~~l~~~l~~a~~~-~~~~Ivl~in----spGG~v~~------------~~~i~~~i~   64 (230)
T 3viv_A            7 KNIVYVAQIK-----GQITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADA------------MMNIVQRIQ   64 (230)
T ss_dssp             CCEEEEEEEE-----SCBCHHHHHHHHHHHHHHHHT-TCSEEEEEEE----BSCEEHHH------------HHHHHHHHH
T ss_pred             CCeEEEEEEe-----CEECHHHHHHHHHHHHHHhcC-CCCEEEEEEe----CCCcCHHH------------HHHHHHHHH
Confidence            3679999997     478999999999999999864 6899999875    66766543            345777888


Q ss_pred             cCCccEEEee---chhccHHhHHHHHhcCEEEEeCCcEEeccceeee
Q 032207           96 RCRKPIIGAI---SGFAVTAGFEIALACDVLVAAKGAKFIDTHARLV  139 (145)
Q Consensus        96 ~~~kp~Ia~v---~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G  139 (145)
                      .+|||+|+++   +|.|.|+|+.|+++||+|++.++++|+.+++..+
T Consensus        65 ~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~  111 (230)
T 3viv_A           65 QSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILG  111 (230)
T ss_dssp             TCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEE
T ss_pred             hCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceec
Confidence            9999999999   9999999999999999999999999999998863

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.39  E-value=6e-13  Score=101.32  Aligned_cols=105  Identities=17%  Similarity=0.103  Sum_probs=85.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHH---h
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQM---E   95 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l---~   95 (145)
                      |..+..+..-..|+++..+.+++.++++.+.++ .+++|+|++.|     |+|+.+....     ...+.++++.+   .
T Consensus       120 V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~sG-----Garlqeg~~~-----l~~~~~i~~al~~~~  188 (304)
T 2f9y_B          120 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG-----GARMQEALMS-----LMQMAKTSAALAKMQ  188 (304)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES-----SBCGGGTHHH-----HHHHHHHHHHHHHHH
T ss_pred             EEEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECCC-----CcCHHHHHHH-----HHHHHHHHHHHHHHh
Confidence            677777766678999999999999999999988 79999999876     7888653321     12334455555   4


Q ss_pred             cCCccEEEeechhccHHh-HHHHHhcCEEEEeCCcEEecc
Q 032207           96 RCRKPIIGAISGFAVTAG-FEIALACDVLVAAKGAKFIDT  134 (145)
Q Consensus        96 ~~~kp~Ia~v~G~a~GgG-~~l~l~~D~~ia~~~a~f~~p  134 (145)
                      ..++|+|++|+|+|.||| +.++++||++||.++++|++.
T Consensus       189 ~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~  228 (304)
T 2f9y_B          189 ERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA  228 (304)
T ss_dssp             HTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS
T ss_pred             cCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee
Confidence            559999999999999999 778999999999999999875

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.14  E-value=9.3e-11  Score=85.35  Aligned_cols=92  Identities=16%  Similarity=0.123  Sum_probs=73.6

Q ss_pred             CCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHH
Q 032207           33 LTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTA  112 (145)
Q Consensus        33 l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~Gg  112 (145)
                      ++..+.+++.+.|..++.++..+.|+|+-    .|.|+++..            ...++..|..+++|+++.++|.|.++
T Consensus        54 I~~~~a~~i~~~L~~l~~~~~~k~I~l~I----nSPGG~v~a------------g~~I~~~i~~~~~pV~t~v~G~AaS~  117 (218)
T 1y7o_A           54 VEDNMANSVIAQLLFLDAQDSTKDIYLYV----NTPGGSVSA------------GLAIVDTMNFIKADVQTIVMGMAASM  117 (218)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCTTSCEEEEE----EECCBCHHH------------HHHHHHHHHHSSSCEEEEEEEEEETH
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCCCEEEEE----ECcCCCHHH------------HHHHHHHHHhcCCCEEEEEccEeHHH
Confidence            78899999999999999877777777763    333433322            23456678889999999999999999


Q ss_pred             hHHHHHhcCE--EEEeCCcEEeccceeeee
Q 032207          113 GFEIALACDV--LVAAKGAKFIDTHARLVC  140 (145)
Q Consensus       113 G~~l~l~~D~--~ia~~~a~f~~pe~~~G~  140 (145)
                      |+.|+++||.  |+|.++++|++.+...|+
T Consensus       118 G~~Ia~a~d~g~r~a~p~a~igih~p~~g~  147 (218)
T 1y7o_A          118 GTVIASSGAKGKRFMLPNAEYMIHQPMGGT  147 (218)
T ss_dssp             HHHHHTTSCTTCEEECTTCEEECCCCC---
T ss_pred             HHHHHHcCCcCcEEEcCCcEEEEecccccc
Confidence            9999999999  999999999998887554

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.00  E-value=1.5e-09  Score=83.28  Aligned_cols=97  Identities=9%  Similarity=0.091  Sum_probs=72.5

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechh
Q 032207           29 SLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGF  108 (145)
Q Consensus        29 ~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~  108 (145)
                      ..++++++..+...++++.+++.. +-+|.|.-.++.+. |.....      ........+.+..+..+++|+|++|+|.
T Consensus       137 ~~G~~~~~~~~Ka~r~~~~A~~~~-~PlI~lvdt~Ga~~-g~~ae~------~g~~~~~a~~l~al~~~~vPvIavV~G~  208 (327)
T 2f9i_A          137 NFGMAHPEGYRKALRLMKQAEKFN-RPIFTFIDTKGAYP-GKAAEE------RGQSESIATNLIEMASLKVPVIAIVIGE  208 (327)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEESCSCC-CHHHHH------TTHHHHHHHHHHHHHTCSSCEEEEEEEE
T ss_pred             hcCCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCCCCCc-chhhhh------hhhHHHHHHHHHHHHhCCCCEEEEEECC
Confidence            347899999999999999998765 44555544332222 211111      1122344667778999999999999999


Q ss_pred             ccHHhHHHHHhcCEEEEeCCcEEec
Q 032207          109 AVTAGFEIALACDVLVAAKGAKFID  133 (145)
Q Consensus       109 a~GgG~~l~l~~D~~ia~~~a~f~~  133 (145)
                      |.|||+.++++||++||.++++|++
T Consensus       209 a~GGGa~~~~~~D~via~~~A~~~v  233 (327)
T 2f9i_A          209 GGSGGALGIGIANKVLMLENSTYSV  233 (327)
T ss_dssp             EBHHHHHTTCCCSEEEEETTCBCBS
T ss_pred             cChHHHHHHHCCCEEEEcCCceEee
Confidence            9999999999999999999999986

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=98.95  E-value=4.4e-09  Score=81.03  Aligned_cols=98  Identities=10%  Similarity=0.104  Sum_probs=73.1

Q ss_pred             CCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechh
Q 032207           29 SLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGF  108 (145)
Q Consensus        29 ~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~  108 (145)
                      ..++++++..+...++++.+.+.. +-+|.|.-.++.+. |.....      ........+.+..+..+++|+|++|+|.
T Consensus       151 ~~G~~~~~~~~Ka~r~~~~A~~~~-lPlI~lvDt~Ga~~-g~~aE~------~g~~~~~a~~l~al~~~~vPvIavV~G~  222 (339)
T 2f9y_A          151 NFGMPAPEGYRKALRLMQMAERFK-MPIITFIDTPGAYP-GVGAEE------RGQSEAIARNLREMSRLGVPVVCTVIGE  222 (339)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEESCSCC-SHHHHH------TTHHHHHHHHHHHHHTCSSCEEEEEEEE
T ss_pred             hcCCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCCCCcc-chHHHH------HHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            347899999999999999988765 44555554332222 211111      1122344667778999999999999999


Q ss_pred             ccHHhHHHHHhcCEEEEeCCcEEecc
Q 032207          109 AVTAGFEIALACDVLVAAKGAKFIDT  134 (145)
Q Consensus       109 a~GgG~~l~l~~D~~ia~~~a~f~~p  134 (145)
                      |.|||+.++++||++||.++++|++.
T Consensus       223 a~GGGa~~~~~~D~via~p~A~~~v~  248 (339)
T 2f9y_A          223 GGSGGALAIGVGDKVNMLQYSTYSVI  248 (339)
T ss_dssp             EEHHHHHTTCCCSEEEECTTCEEESS
T ss_pred             cCcHHHHHHhccCeeeecCCCEEEee
Confidence            99999999999999999999999863

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=98.42  E-value=5.3e-07  Score=64.98  Aligned_cols=88  Identities=14%  Similarity=0.090  Sum_probs=68.9

Q ss_pred             CCCHHHHHHHHHHHHhhccCCCeeEEEEE--cCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           32 SLTRSMMADMAQAFKSLDKDESVLVIILS--GSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        32 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~--g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      .++..+.+.+.+.|..++.++..+.|+|.  +.|+      ++.            ....+++.|..+++|+++.+.|.|
T Consensus        35 ~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPGG------~v~------------a~~~I~~~i~~~~~pV~~~v~g~A   96 (208)
T 2cby_A           35 EVNDEIANRLCAQILLLAAEDASKDISLYINSPGG------SIS------------AGMAIYDTMVLAPCDIATYAMGMA   96 (208)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCB------CHH------------HHHHHHHHHHHCSSCEEEEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCCC------CHH------------HHHHHHHHHHhcCCCEEEEECcEe
Confidence            36788999999999999876666666554  3332      221            134567788888999999999999


Q ss_pred             cHHhHHHHHhcCE--EEEeCCcEEecccee
Q 032207          110 VTAGFEIALACDV--LVAAKGAKFIDTHAR  137 (145)
Q Consensus       110 ~GgG~~l~l~~D~--~ia~~~a~f~~pe~~  137 (145)
                      .++|..++++||.  |++.+++.++.....
T Consensus        97 aS~g~~Ia~agd~~~~~a~p~a~igih~p~  126 (208)
T 2cby_A           97 ASMGEFLLAAGTKGKRYALPHARILMHQPL  126 (208)
T ss_dssp             ETHHHHHHHTSCTTCEEECTTCEEECCCC-
T ss_pred             HHHHHHHHhCCCcCCEEEcCCcEEEEeccc
Confidence            9999999999998  999999999876544

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=98.11  E-value=8.1e-06  Score=58.01  Aligned_cols=86  Identities=12%  Similarity=0.076  Sum_probs=67.9

Q ss_pred             CCHHHHHHHHHHHHhhccCCCeeEEEEE--cCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207           33 LTRSMMADMAQAFKSLDKDESVLVIILS--GSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV  110 (145)
Q Consensus        33 l~~~~~~~l~~~l~~~~~~~~v~~vvl~--g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~  110 (145)
                      ++....+.+.+.|..++.++..+.|+|.  +.|+      ++            .....+++.|...++|+++.+.|.|.
T Consensus        35 I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG------~v------------~a~~~I~~~i~~~~~pV~~~v~g~Aa   96 (193)
T 1yg6_A           35 VEDHMANLIVAQMLFLEAENPEKDIYLYINSPGG------VI------------TAGMSIYDTMQFIKPDVSTICMGQAA   96 (193)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCB------CH------------HHHHHHHHHHHHSSSCEEEEEEEEEE
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCC------CH------------HHHHHHHHHHHhcCCCEEEEEeeeHH
Confidence            7888999999999998876666766665  3332      22            12245667788889999999999999


Q ss_pred             HHhHHHHHhcCE--EEEeCCcEEeccce
Q 032207          111 TAGFEIALACDV--LVAAKGAKFIDTHA  136 (145)
Q Consensus       111 GgG~~l~l~~D~--~ia~~~a~f~~pe~  136 (145)
                      .+|.-++++||.  |++.+++.++.-..
T Consensus        97 S~g~~Ia~ag~~~~r~a~p~s~i~ih~p  124 (193)
T 1yg6_A           97 SMGAFLLTAGAKGKRFCLPNSRVMIHQP  124 (193)
T ss_dssp             THHHHHHHTSCTTCEEECTTCEEEECCC
T ss_pred             HHHHHHHHCCCcCcEEEecCcEEEEEec
Confidence            999999999999  99999998876443

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=97.97  E-value=1.9e-05  Score=56.61  Aligned_cols=86  Identities=13%  Similarity=0.121  Sum_probs=67.4

Q ss_pred             CCCHHHHHHHHHHHHhhccCCCeeEEEEE--cCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           32 SLTRSMMADMAQAFKSLDKDESVLVIILS--GSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        32 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~--g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      .++..+.+.+.+.|..++.++..+.|+|.  +.|+      ++            .....++..|...++|+++.+.|.|
T Consensus        35 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG------~v------------~~~~~I~~~i~~~~~~V~t~~~G~A   96 (203)
T 3qwd_A           35 QIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGG------SV------------TAGFAIYDTIQHIKPDVQTICIGMA   96 (203)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCB------CH------------HHHHHHHHHHHHSSSCEEEEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCC------CH------------HHHHHHHHHHHHhcCCcEEEEeeee
Confidence            47889999999999999876656655544  4333      22            1224556778888999999999999


Q ss_pred             cHHhHHHHHhcC--EEEEeCCcEEeccc
Q 032207          110 VTAGFEIALACD--VLVAAKGAKFIDTH  135 (145)
Q Consensus       110 ~GgG~~l~l~~D--~~ia~~~a~f~~pe  135 (145)
                      .++|.-++++||  .|++.++++|..-.
T Consensus        97 aSag~~i~~ag~~g~r~~~p~a~imiHq  124 (203)
T 3qwd_A           97 ASMGSFLLAAGAKGKRFALPNAEVMIHQ  124 (203)
T ss_dssp             ETHHHHHHHTSCTTCEEECTTCEEECCC
T ss_pred             hhHHHHHHHcCCcCeEEEcCCceEEEec
Confidence            999999999999  69999999987643

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=97.91  E-value=2.9e-05  Score=56.17  Aligned_cols=85  Identities=8%  Similarity=0.077  Sum_probs=65.9

Q ss_pred             CCCHHHHHHHHHHHHhhccCCCeeEEEEE--cCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           32 SLTRSMMADMAQAFKSLDKDESVLVIILS--GSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        32 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~--g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      .++....+.+.+.|..++.++. +.|+|.  +.|+      ++            .....+++.|...++|+++.+.|.|
T Consensus        47 ~I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSPGG------sv------------~a~~~I~~~i~~~~~pV~t~v~g~A  107 (215)
T 2f6i_A           47 EINKKTADELISQLLYLDNINH-NDIKIYINSPGG------SI------------NEGLAILDIFNYIKSDIQTISFGLV  107 (215)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCC-SCEEEEEEECCB------CH------------HHHHHHHHHHHHSSSCEEEEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhCCC-CcEEEEEECCCC------CH------------HHHHHHHHHHHhcCCCEEEEEeeEh
Confidence            3678888899999988876554 655554  4332      22            1234566778888999999999999


Q ss_pred             cHHhHHHHHhcCE--EEEeCCcEEeccc
Q 032207          110 VTAGFEIALACDV--LVAAKGAKFIDTH  135 (145)
Q Consensus       110 ~GgG~~l~l~~D~--~ia~~~a~f~~pe  135 (145)
                      ..+|.-+++++|.  |++.+++.+....
T Consensus       108 AS~g~~Ia~agd~g~i~a~p~s~i~ih~  135 (215)
T 2f6i_A          108 ASMASVILASGKKGKRKSLPNCRIMIHQ  135 (215)
T ss_dssp             CHHHHHHHHTSCTTCEEECTTCEEESSC
T ss_pred             HhHHHHHHHcCCcccEEEcCCCEEEEec
Confidence            9999999999999  9999999987644

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=97.73  E-value=9.3e-05  Score=52.94  Aligned_cols=87  Identities=8%  Similarity=0.053  Sum_probs=67.6

Q ss_pred             CCCHHHHHHHHHHHHhhccCCCeeEEEEE--cCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           32 SLTRSMMADMAQAFKSLDKDESVLVIILS--GSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        32 ~l~~~~~~~l~~~l~~~~~~~~v~~vvl~--g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      .++..+.+.+...|..++.++..+.|+|.  +.|+      ++            .....++..|...++|+++.+.|.|
T Consensus        38 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpGG------~v------------~~~~~I~~~i~~~~~~v~t~~~G~A   99 (201)
T 3p2l_A           38 EVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGG------MV------------TAGMGVYDTMQFIKPDVSTICIGLA   99 (201)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCB------CH------------HHHHHHHHHHHHSSSCEEEEEEEEE
T ss_pred             EECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC------CH------------HHHHHHHHHHHHhCCCeEEEEcCEe
Confidence            37888999999999998876655655554  3332      22            1224566778888999999999999


Q ss_pred             cHHhHHHHHhcCE--EEEeCCcEEeccce
Q 032207          110 VTAGFEIALACDV--LVAAKGAKFIDTHA  136 (145)
Q Consensus       110 ~GgG~~l~l~~D~--~ia~~~a~f~~pe~  136 (145)
                      .++|.-+++++|.  |++.+++.+.....
T Consensus       100 aS~g~~i~~ag~~g~r~~~p~a~imiH~p  128 (201)
T 3p2l_A          100 ASMGSLLLAGGAKGKRYSLPSSQIMIHQP  128 (201)
T ss_dssp             ETHHHHHHHTSSTTCEEECTTCEEEECCC
T ss_pred             hhHHHHHHHcCccCCEEEcCCCeEEEecc
Confidence            9999999999998  99999998866544

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=97.67  E-value=8.6e-05  Score=55.58  Aligned_cols=85  Identities=13%  Similarity=0.083  Sum_probs=65.3

Q ss_pred             CCHHHHHHHHHHHHhhccCCCeeEEEEE--cCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207           33 LTRSMMADMAQAFKSLDKDESVLVIILS--GSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV  110 (145)
Q Consensus        33 l~~~~~~~l~~~l~~~~~~~~v~~vvl~--g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~  110 (145)
                      ++..+.+.+...|..++.++..+.|+|.  +-|+...                  ....++..|...++|+++.+.|.|.
T Consensus        91 I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPGGsV~------------------ag~aIyd~I~~~k~pV~t~v~G~AA  152 (277)
T 1tg6_A           91 IDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVT------------------AGLAIYDTMQYILNPICTWCVGQAA  152 (277)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHH------------------HHHHHHHHHHHSCSCEEEEEEEEEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHH------------------HHHHHHHHHHhcCCCEEEEEccEeH
Confidence            7788888888888887654445666654  3333221                  2244667788889999999999999


Q ss_pred             HHhHHHHHhcCE--EEEeCCcEEeccc
Q 032207          111 TAGFEIALACDV--LVAAKGAKFIDTH  135 (145)
Q Consensus       111 GgG~~l~l~~D~--~ia~~~a~f~~pe  135 (145)
                      .+|.-+++++|.  |++.+++.+..-.
T Consensus       153 SaG~~Ia~Agd~gkr~a~P~S~Imihq  179 (277)
T 1tg6_A          153 SMGSLLLAAGTPGMRHSLPNSRIMIHQ  179 (277)
T ss_dssp             THHHHHHHTSCTTCEEECTTCEEEECC
T ss_pred             HHHHHHHHCCCcCCEEEecCCEEEEec
Confidence            999999999999  9999999887543

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=97.50  E-value=0.00059  Score=55.32  Aligned_cols=105  Identities=10%  Similarity=0.040  Sum_probs=74.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHh--c
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQME--R   96 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~--~   96 (145)
                      |+.+..+..-..-++....-+.+..+++.+.+.. +-+|.|..     |.|+.+.+-.....     .+.+.+.++.  .
T Consensus        97 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-lP~I~l~~-----SGGARmqeg~~sl~-----~~~~i~~~~~~~s  165 (523)
T 1on3_A           97 VHAASQDFTVMGGSAGETQSTKVVETMEQALLTG-TPFLFFYD-----SGGARIQEGIDSLS-----GYGKMFFANVKLS  165 (523)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE-----ECSBCGGGTHHHHH-----HHHHHHHHHHHHT
T ss_pred             EEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHcC-CCEEEEEc-----CCCCChhhHHHHHH-----HHHHHHHHHHHhc
Confidence            6666666555678999999999999999988764 55666665     44555554221111     1222222221  3


Q ss_pred             CCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEecc
Q 032207           97 CRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDT  134 (145)
Q Consensus        97 ~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~p  134 (145)
                      -..|.|+++.|+|.||+......||++|+.+++.+.+.
T Consensus       166 ~~iP~Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~a  203 (523)
T 1on3_A          166 GVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFIT  203 (523)
T ss_dssp             TTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESS
T ss_pred             CCCCEEEEEcCCCchHHHHHHhhCCeEEEeCCCEEEec
Confidence            45999999999999999999999999999999887653

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.47  E-value=0.0011  Score=54.03  Aligned_cols=104  Identities=11%  Similarity=0.032  Sum_probs=73.3

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHh--c
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQME--R   96 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~--~   96 (145)
                      |..+-.+..-+.-++.....+.+..+++.+.+.. +-+|.|..     |.|+.+.+-....     ..+.+.+.++.  +
T Consensus       110 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-lP~I~l~d-----SGGARmqeg~~sl-----~~~~~i~~~~~~~s  178 (548)
T 2bzr_A          110 VCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTG-RPLIGIND-----GAGARIQEGVVSL-----GLYSRIFRNNILAS  178 (548)
T ss_dssp             EEEEEECTTSGGGCCCHHHHHHHHHHHHHHHHHT-CCEEEEEC-----CCSCCGGGTTHHH-----HHHHHHHHHHHHTT
T ss_pred             EEEEEEcCccccCCCChhHHHHHHHHHHHHHHcC-CCEEEEEc-----CCCCCchhHHHHH-----HHHHHHHHHHHHhc
Confidence            5556665555678999999999999999998764 56777766     4455554421111     12233333332  3


Q ss_pred             CCccEEEeechhccHHhHHHHHhcCEEEEeCC-cEEec
Q 032207           97 CRKPIIGAISGFAVTAGFEIALACDVLVAAKG-AKFID  133 (145)
Q Consensus        97 ~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~-a~f~~  133 (145)
                      -..|.|+++.|+|.||+......||++|+.++ +.+.+
T Consensus       179 ~~iP~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~  216 (548)
T 2bzr_A          179 GVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFI  216 (548)
T ss_dssp             TTSCEEEEECSEEESGGGHHHHHSSEEEEETTTCEEES
T ss_pred             CCCcEEEEecCCCchHHHHHHHhCCeEEeccCceeEEe
Confidence            34999999999999999888889999999997 77765

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=97.43  E-value=0.00047  Score=56.73  Aligned_cols=86  Identities=9%  Similarity=0.063  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHhhccCCCeeEEEEEcCCCccccc-CCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHhHH
Q 032207           37 MMADMAQAFKSLDKDESVLVIILSGSGRAFCSG-VDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFE  115 (145)
Q Consensus        37 ~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G-~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~  115 (145)
                      ..+++.+.|+.+++|+.++.|+|.-.    |.| +++..         .....+.++.+....|||||.+++ +.-+|+-
T Consensus        71 ~~~~i~~~L~~a~~d~~ik~I~L~in----spGgG~v~~---------~~~I~~~i~~~k~~gkpvva~~~~-aas~~y~  136 (593)
T 3bf0_A           71 SLFDIVNTIRQAKDDRNITGIVMDLK----NFAGGDQPS---------MQYIGKALKEFRDSGKPVYAVGEN-YSQGQYY  136 (593)
T ss_dssp             EHHHHHHHHHHHHHCTTCCCEEEECT----EEEECCHHH---------HHHHHHHHHHHHHTTCCEEEEESC-EEHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCceEEEEEeC----CCCCCcHHH---------HHHHHHHHHHHHhcCCeEEEEEcc-chhHHHH
Confidence            46788899999999999999999864    222 44433         123455566666667999999876 6788999


Q ss_pred             HHHhcCEEEEeCCcEEeccce
Q 032207          116 IALACDVLVAAKGAKFIDTHA  136 (145)
Q Consensus       116 l~l~~D~~ia~~~a~f~~pe~  136 (145)
                      |+++||.+++.+.+.++.--+
T Consensus       137 lAsaad~i~~~P~~~vg~~g~  157 (593)
T 3bf0_A          137 LASFANKIWLSPQGVVDLHGF  157 (593)
T ss_dssp             HHTTSSEEEECTTCCEECCCC
T ss_pred             HHHhCCEEEECCCceEEEecc
Confidence            999999999999988865444

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=97.42  E-value=0.00085  Score=55.08  Aligned_cols=108  Identities=17%  Similarity=0.157  Sum_probs=76.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc-CcccHHHHHHHHHhcC
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG-DVKDVETDTVAQMERC   97 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~-~~~~~~~~~~~~l~~~   97 (145)
                      |.++-.+..-+.-++.+...+.+..+++.+.+.. +-+|.|.-     |.|+.+.+-...... ...........++...
T Consensus       107 v~v~a~D~t~~gGs~g~~~~~Ki~r~~e~A~~~~-lPvI~l~d-----SgGArlqe~~~~l~~~~~~g~i~~~~~~ls~~  180 (587)
T 1pix_A          107 CVVVASDNKKLAGAWVPGQAECLLRASDTAKTLH-VPLVYVLN-----CSGVKFDEQEKVYPNRRGGGTPFFRNAELNQL  180 (587)
T ss_dssp             EEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-CCEEEEEC-----CCEECGGGHHHHSSSTTSTTHHHHHHHHHHHT
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEe-----CCCCCccccchhccccccHHHHHHHHHHHhCC
Confidence            6666666655677889999999999999988764 45666655     445566543332211 1112233345667788


Q ss_pred             CccEEEeechhccHHhHHHHHhcCEEEEeCC-cEEec
Q 032207           98 RKPIIGAISGFAVTAGFEIALACDVLVAAKG-AKFID  133 (145)
Q Consensus        98 ~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~-a~f~~  133 (145)
                      .+|+|+++.|+|.|||... ..||++|++++ +.+++
T Consensus       181 giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~  216 (587)
T 1pix_A          181 GIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAV  216 (587)
T ss_dssp             TCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEES
T ss_pred             CCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEe
Confidence            9999999999999999999 88999988765 87765

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.42  E-value=0.0011  Score=53.71  Aligned_cols=104  Identities=13%  Similarity=0.065  Sum_probs=73.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHh--c
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQME--R   96 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~--~   96 (145)
                      |+.+..+..-..-++....-+.+..+++.+.+.. +-+|.|..     |.|+.+.+-.....     .+.+.+.++.  +
T Consensus        93 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-~P~I~l~~-----SGGaRmqeg~~sl~-----~~~~i~~~~~~~s  161 (522)
T 1x0u_A           93 VFAYAQDFTVLGGSLGETHANKIVRAYELALKVG-APVVGIND-----SGGARIQEGALSLE-----GYGAVFKMNVMAS  161 (522)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEC-----CCSBCGGGTHHHHH-----HHHHHHHHHHHHT
T ss_pred             EEEEEecCceeCccccHHHHHHHHHHHHHHHHcC-CCEEEEEc-----CCCCChhHHHHHHH-----HHHHHHHHHHHhC
Confidence            5666666555678999999999999999988754 56777775     44555544221111     1222222221  3


Q ss_pred             CCccEEEeechhccHHhHHHHHhcCEEEEeCC-c-EEec
Q 032207           97 CRKPIIGAISGFAVTAGFEIALACDVLVAAKG-A-KFID  133 (145)
Q Consensus        97 ~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~-a-~f~~  133 (145)
                      -..|.|+++.|+|.||+......||++|+.++ + .+.+
T Consensus       162 ~~iP~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~  200 (522)
T 1x0u_A          162 GVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFV  200 (522)
T ss_dssp             TTSCEEEEECSEEEGGGGHHHHHSSEEEEECSTTCEEES
T ss_pred             CCCcEEEEEcCCCchHHHHHHhcCCeEEEecCCccEEEe
Confidence            45999999999999999999999999999998 7 7655

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=97.40  E-value=0.00088  Score=50.32  Aligned_cols=107  Identities=9%  Similarity=0.029  Sum_probs=73.5

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCC
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCR   98 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (145)
                      |..+..+..-..-+++....+.+.++++.+.+.. +-+|.|...|+.     -..+-.  ..-.........+.++....
T Consensus       123 V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~~-lPlI~l~dsgGa-----r~qEGi--~sl~q~aki~~~l~~~s~~~  194 (285)
T 2f9i_B          123 FGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENR-LPFILFSASGGA-----RMQEGI--ISLMQMGKTSVSLKRHSDAG  194 (285)
T ss_dssp             EEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEECSC-----CGGGHH--HHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEEccccccCcCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCc-----chhhhh--hhHhHHHHHHHHHHHHHcCC
Confidence            6666665544567899999999999999988765 566666654432     222200  00000112233455666789


Q ss_pred             ccEEEeechhccHHhHHH-HHhcCEEEEeCCcEEec
Q 032207           99 KPIIGAISGFAVTAGFEI-ALACDVLVAAKGAKFID  133 (145)
Q Consensus        99 kp~Ia~v~G~a~GgG~~l-~l~~D~~ia~~~a~f~~  133 (145)
                      .|.|+.+.|+|.||+... ++.+|+++|.+++.+++
T Consensus       195 vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~  230 (285)
T 2f9i_B          195 LLYISYLTHPTTGGVSASFASVGDINLSEPKALIGF  230 (285)
T ss_dssp             CCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEES
T ss_pred             CCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEE
Confidence            999999999999999554 78999999999988775

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.25  E-value=0.0033  Score=51.04  Aligned_cols=104  Identities=12%  Similarity=0.060  Sum_probs=71.0

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhc--
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMER--   96 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~--   96 (145)
                      |..+..+..-+.-++.....+.+..+++.+.+.. +-+|.|.-.|     |+.+.+-...     ...+.+.+.++..  
T Consensus        99 v~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~-lP~I~l~dSg-----GaRmqEg~~~-----l~~~~~i~~~~~~~s  167 (530)
T 3iav_A           99 VAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTG-CPVVGINDSG-----GARIQEGVAS-----LGAYGEIFRRNTHAS  167 (530)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC-----SBCGGGTHHH-----HHHHHHHHHHHHHTT
T ss_pred             EEEEEECCCcceEeccHHHHHHHHHHHHHHHHcC-CCEEEEEcCC-----Ccchhhhhhh-----HHHHHHHHHHHHHHc
Confidence            5555555555678899999999999999998764 5667666543     3333321100     1112233333222  


Q ss_pred             CCccEEEeechhccHHhHHHHHhcCEEEEeCC-cEEec
Q 032207           97 CRKPIIGAISGFAVTAGFEIALACDVLVAAKG-AKFID  133 (145)
Q Consensus        97 ~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~-a~f~~  133 (145)
                      -..|.|+++.|+|.||+.-....||++|++++ +.+.+
T Consensus       168 ~~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~  205 (530)
T 3iav_A          168 GVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFI  205 (530)
T ss_dssp             TTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEES
T ss_pred             CCCCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEe
Confidence            23899999999999999998889999999876 77765

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=96.80  E-value=0.014  Score=47.55  Aligned_cols=109  Identities=17%  Similarity=0.116  Sum_probs=72.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc-CcccHHHHHHHHHhcC
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG-DVKDVETDTVAQMERC   97 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~-~~~~~~~~~~~~l~~~   97 (145)
                      |.++..+..-+.-++.+...+.+..+++.+.+.. +-+|.|.-.|+.     .+..-...... ...........++...
T Consensus       123 v~V~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~-lPvI~l~dSgGA-----Rl~~q~~~~~~~~~~~~i~~~~~~ls~~  196 (555)
T 3u9r_B          123 CMIVGNDATVKGGTYYPLTVKKHLRAQAIALENR-LPCIYLVDSGGA-----NLPRQDEVFPDREHFGRIFFNQANMSAR  196 (555)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCCCB-----CGGGGGGTSSSTTSTTHHHHHHHHHHHT
T ss_pred             EEEEEECCccccCCCCHHHHHHHHHHHHHHHHcC-CCEEEEECCCCC-----CCCCcceeecccccHHHHHHHHHHHhcC
Confidence            5666666555678899999999999999998764 556666654433     32211111100 0011222334456667


Q ss_pred             CccEEEeechhccHHhHHHHHhcCEEEEeC-CcEEec
Q 032207           98 RKPIIGAISGFAVTAGFEIALACDVLVAAK-GAKFID  133 (145)
Q Consensus        98 ~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~-~a~f~~  133 (145)
                      ..|+|+++.|+|.|||.-....||++|+.+ ++.+.+
T Consensus       197 giP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~~  233 (555)
T 3u9r_B          197 GIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFL  233 (555)
T ss_dssp             TCCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBCBS
T ss_pred             CCCEEEEEecCCCccHHHHHHhCCceEEecCCceEEE
Confidence            899999999999999999999999988776 465543

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=96.79  E-value=0.0073  Score=49.01  Aligned_cols=104  Identities=15%  Similarity=0.119  Sum_probs=70.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHH--Hhc
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQ--MER   96 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~--l~~   96 (145)
                      |.++-.+..-+.-++.....+.+..+++.+.+.. +-+|.|.-.     .|+.+.+-....     ..+.+.+.+  ...
T Consensus       100 v~v~a~D~t~~gGS~g~~~~~Ki~r~~e~A~~~~-lPvI~l~dS-----gGAR~qeg~~~l-----~g~~~~~~~~~~~s  168 (527)
T 1vrg_A          100 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGINDS-----GGARIQEGVDAL-----AGYGEIFLRNTLAS  168 (527)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEEE-----CSBCGGGTHHHH-----HHHHHHHHHHHHHT
T ss_pred             EEEEEEeccccCccccHHHHHHHHHHHHHHHHcC-CCEEEEECC-----CCCCccchhHHH-----HHHHHHHHHHHHhC
Confidence            6666666554678899999999999999888764 445655543     333343211110     011122211  224


Q ss_pred             CCccEEEeechhccHHhHHHHHhcCEEEEeCC-cEEec
Q 032207           97 CRKPIIGAISGFAVTAGFEIALACDVLVAAKG-AKFID  133 (145)
Q Consensus        97 ~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~-a~f~~  133 (145)
                      ...|.|+++.|+|.|||......||++|+.++ +.+.+
T Consensus       169 ~~iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~  206 (527)
T 1vrg_A          169 GVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFI  206 (527)
T ss_dssp             TTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBS
T ss_pred             CCCCEEEEEeCCCchHHHHHHHcCCeEEEecCceEEEe
Confidence            56999999999999999888889999999987 76554

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=96.73  E-value=0.013  Score=47.58  Aligned_cols=104  Identities=13%  Similarity=0.092  Sum_probs=70.0

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHH--hc
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQM--ER   96 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l--~~   96 (145)
                      |..+..+..-+.-++.....+.+..+++.+.+.. +-+|.|.-.|     |+.+.+-...     ...+.+.+.++  .+
T Consensus       107 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-lPvI~l~dSG-----GARmqeg~~s-----l~~~~~i~~~~~~~s  175 (531)
T 3n6r_B          107 VYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNG-APVIGINDSG-----GARIQEGVDS-----LAGYGEVFQRNIMAS  175 (531)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCC-----CBCGGGTHHH-----HHHHHHHHHHHHHTT
T ss_pred             EEEEEECCCcccccccHHHHHHHHHHHHHHHHcC-CCEEEEeCCC-----ccccCcccch-----hhhHHHHHHHHHHHh
Confidence            5556666555678899999999999999988654 4566666533     3334331100     01112222222  12


Q ss_pred             CCccEEEeechhccHHhHHHHHhcCEEEEeCC-cEEec
Q 032207           97 CRKPIIGAISGFAVTAGFEIALACDVLVAAKG-AKFID  133 (145)
Q Consensus        97 ~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~-a~f~~  133 (145)
                      -..|.|+++.|+|.||+.-....||++|+.++ +.+.+
T Consensus       176 ~~iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~  213 (531)
T 3n6r_B          176 GVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFV  213 (531)
T ss_dssp             TTSCEEEEECSCCBGGGGHHHHHSSEEEEETTTCBCBS
T ss_pred             CCCCEEEEEeCCcchHHHHHhhhCCEEEEecCCceEee
Confidence            45899999999999999888888999999986 66654

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.59  E-value=0.016  Score=46.99  Aligned_cols=107  Identities=14%  Similarity=0.090  Sum_probs=73.4

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCC
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCR   98 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (145)
                      |..+-.+..-..-+++.+..+...+.++.+.+. .+-+|.|.-.++ |..|.+-+.      ........+.+..+....
T Consensus       327 V~via~d~~~~gG~l~~~~~~K~ar~i~~a~~~-~~Plv~l~ds~G-~~~G~~~E~------~G~~~~~Ak~l~~~~~~~  398 (522)
T 1x0u_A          327 VGIVANNPEEFGGSIDIDAADKAARFIRFCDAF-NIPLISLVDTPG-YVPGTDQEY------KGIIRHGAKMLYAFAEAT  398 (522)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEECC-BCCSHHHHH------TTHHHHHHHHHHHHHHCC
T ss_pred             EEEEEECCCccCCCcCHHHHHHHHHHHHHHhhC-CCCEEEEecCCC-CCCchHHHH------HHHHHHHHHHHHHHHhCC
Confidence            555555443334689999999999999988754 456776665432 222211111      111234456777888899


Q ss_pred             ccEEEeechhccHHhHHHHH----hcCEEEEeCCcEEec
Q 032207           99 KPIIGAISGFAVTAGFEIAL----ACDVLVAAKGAKFID  133 (145)
Q Consensus        99 kp~Ia~v~G~a~GgG~~l~l----~~D~~ia~~~a~f~~  133 (145)
                      .|.|+.+-|.+.|||+--..    .+|+++|.+++.++.
T Consensus       399 vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v  437 (522)
T 1x0u_A          399 VPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAV  437 (522)
T ss_dssp             SCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEES
T ss_pred             CCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCCEEEe
Confidence            99999999999999875443    499999999998865

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=96.58  E-value=0.024  Score=46.50  Aligned_cols=110  Identities=13%  Similarity=0.146  Sum_probs=72.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcc-cCcccHHHHHHHHHhcC
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFK-GDVKDVETDTVAQMERC   97 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~-~~~~~~~~~~~~~l~~~   97 (145)
                      |.++-.+..-+.-++.....+.+..+++.+.+.. +-+|.|.-.|+     +.+.+-..... ............++...
T Consensus       108 V~V~a~D~tv~gGS~g~~~~~Ki~Ra~e~A~~~~-lPvI~l~dSgG-----Arl~~qe~~~~~l~~~g~if~~~~~ls~~  181 (588)
T 3gf3_A          108 VYIVASDNKKMAGAWVPGQAENLIRCSDAAKMMH-LPLIYLLNCSG-----VEFPNQDKVYPNRRGGGTPFFRNSELNQL  181 (588)
T ss_dssp             EEEEEECTTSGGGCBCTTHHHHHHHHHHHHHHHT-CCEEEEECCCC-----BCGGGHHHHSSSTTSTTHHHHHHHHHHHT
T ss_pred             EEEEEECCcccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEcCCC-----cCcccccccccchhhHHHHHHHHHHHhcC
Confidence            5555555555677888999999999999988654 56676665543     33321111110 00011222233456667


Q ss_pred             CccEEEeechhccHHhHHHHHhcCEEEEeCCcEEecc
Q 032207           98 RKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDT  134 (145)
Q Consensus        98 ~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~p  134 (145)
                      ..|.|+++-|+|.|||.-.+++.|++++.+++.+.+.
T Consensus       182 ~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~a  218 (588)
T 3gf3_A          182 GIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVG  218 (588)
T ss_dssp             TCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESS
T ss_pred             CCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEec
Confidence            8999999999999998766888899999998877663

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=96.49  E-value=0.011  Score=42.33  Aligned_cols=96  Identities=9%  Similarity=0.048  Sum_probs=65.3

Q ss_pred             CCCHHHHHHHHHHHHhhccCCCee--EEEEEcCCCcccc-cCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechh
Q 032207           32 SLTRSMMADMAQAFKSLDKDESVL--VIILSGSGRAFCS-GVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGF  108 (145)
Q Consensus        32 ~l~~~~~~~l~~~l~~~~~~~~v~--~vvl~g~g~~F~~-G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~  108 (145)
                      .++.++.+.+...|..++.++..+  .+.|-+.|..--. |.-+         ........++..|...+.|+...+-|.
T Consensus        36 ~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~---------G~v~aglaIyd~m~~~~~~V~t~~~G~  106 (205)
T 4gm2_A           36 PIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINL---------NGITDVISIVDVINYISSDVYTYCLGK  106 (205)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCT---------THHHHHHHHHHHHHHSSSCEEEEEEEE
T ss_pred             EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCC---------CCHHHHHHHHHHHHhcCCCEEEEEEee
Confidence            378999999999999988543233  3334444411000 0000         001223456778888899999999999


Q ss_pred             ccHHhHHHHHhcC--EEEEeCCcEEeccce
Q 032207          109 AVTAGFEIALACD--VLVAAKGAKFIDTHA  136 (145)
Q Consensus       109 a~GgG~~l~l~~D--~~ia~~~a~f~~pe~  136 (145)
                      |.+.|.-|++++|  .|++.+++++-+-..
T Consensus       107 AaS~as~il~aG~~gkR~~lP~a~iMIHqP  136 (205)
T 4gm2_A          107 AYGIACILASSGKKGYRFSLKNSSFCLNQS  136 (205)
T ss_dssp             EETHHHHHHTTSCTTCEEECTTCEEEECCC
T ss_pred             ehhHHHHHHhcCCCCCEEecCCCEEEEecC
Confidence            9999999999999  599999998865433

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=95.65  E-value=0.093  Score=42.59  Aligned_cols=108  Identities=17%  Similarity=0.181  Sum_probs=74.8

Q ss_pred             CcEEEEEEcCCC-CCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHh
Q 032207           17 MGIAYVTINRPK-SLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQME   95 (145)
Q Consensus        17 ~~v~~i~l~~~~-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~   95 (145)
                      +.-.-|.=|+|. ..-.++.+..+...+.++.+++. .+-+|.|.-..+ |..|.+-+.      ........+++..+.
T Consensus       331 G~~Vgvian~~~~~~G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtpG-f~~G~~~E~------~gi~~~~Ak~l~a~a  402 (530)
T 3iav_A          331 GRPVGIVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVPG-FLPGVDQEH------DGIIRRGAKLIFAYA  402 (530)
T ss_dssp             TEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEECC-BCCCHHHHH------TTHHHHHHHHHHHHH
T ss_pred             CEEEEEEEecCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeeCCC-CCccHHHHH------hhHHHHHHHHHHHHH
Confidence            443333444443 23579999999999999888754 466666655433 555544221      223344567788889


Q ss_pred             cCCccEEEeechhccHHhHHHHHh-----cCEEEEeCCcEEec
Q 032207           96 RCRKPIIGAISGFAVTAGFEIALA-----CDVLVAAKGAKFID  133 (145)
Q Consensus        96 ~~~kp~Ia~v~G~a~GgG~~l~l~-----~D~~ia~~~a~f~~  133 (145)
                      ....|+|+.|-|.+.|||+ ++++     +|+++|.++++++.
T Consensus       403 ~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a~~~V  444 (530)
T 3iav_A          403 EATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTAQIAV  444 (530)
T ss_dssp             HCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEES
T ss_pred             hCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCceEec
Confidence            9999999999999998776 4444     79999999998874

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=95.12  E-value=0.018  Score=48.44  Aligned_cols=37  Identities=14%  Similarity=0.033  Sum_probs=33.2

Q ss_pred             CCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEec
Q 032207           97 CRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFID  133 (145)
Q Consensus        97 ~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~  133 (145)
                      ...|+|+++.|+|.|||.-+...||++|+.+++.+.+
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~ifl  281 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIIL  281 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEES
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceEEE
Confidence            4679999999999999999999999999999876543

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=94.81  E-value=0.2  Score=40.64  Aligned_cols=96  Identities=15%  Similarity=0.142  Sum_probs=66.4

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           30 LNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        30 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      .-.++++-.+...+.++.+++ ..+-+|.|.-.++ |..|.+-+.      ........+.+..+.....|+|+.|-|.+
T Consensus       343 ~G~~~~~~~~Kaar~i~~a~~-~~~Plv~lvDtpG-~~~G~~~E~------~g~~~~~A~~~~a~~~~~vP~isvI~g~~  414 (527)
T 1vrg_A          343 AGVLDIDSSDKAARFIRFLDA-FNIPILTFVDTPG-YLPGVAQEH------GGIIRHGAKLLYAYSEATVPKITVILRKA  414 (527)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEECC-BCCCHHHHH------TTHHHHHHHHHHHHHHCCSCEEEEEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-cCCCeEEEecCCC-CcCchhhHH------hHHHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            357999999999999988864 3455665554322 333322111      11223345677788889999999999999


Q ss_pred             cHHhHHHHHh----cCEEEEeCCcEEec
Q 032207          110 VTAGFEIALA----CDVLVAAKGAKFID  133 (145)
Q Consensus       110 ~GgG~~l~l~----~D~~ia~~~a~f~~  133 (145)
                      .|||+--...    +|+++|-++++++.
T Consensus       415 ~gGg~~am~~~~~~~d~~~a~p~a~~~V  442 (527)
T 1vrg_A          415 YGGAYIAMGSKHLGADMVLAWPSAEIAV  442 (527)
T ss_dssp             EHHHHHHTTCGGGTCSEEEECTTCEEES
T ss_pred             ccHHHHHhcCCCCCCCEEEEcCCCeEEe
Confidence            9888754333    89999999998864

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=94.63  E-value=0.28  Score=39.77  Aligned_cols=104  Identities=16%  Similarity=0.138  Sum_probs=71.1

Q ss_pred             EEEcCCC-CCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCcc
Q 032207           22 VTINRPK-SLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKP  100 (145)
Q Consensus        22 i~l~~~~-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp  100 (145)
                      |.=|+|. ..-.++.+-.+...+.++.+++. .+-+|.|.-.. .|..|.+-+.      ........+++..+.....|
T Consensus       342 vian~~~~~~G~l~~~~a~Kaarfi~lcd~~-~iPlv~lvDtp-Gf~~G~~~E~------~Gi~~~gAk~l~a~a~a~VP  413 (531)
T 3n6r_B          342 VVANQPLVLAGCLDIDSSRKAARFVRFCDAF-EIPLLTLIDVP-GFLPGTSQEY------GGVIKHGAKLLYAYGEATVP  413 (531)
T ss_dssp             EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-SBCCSHHHHH------TTHHHHHHHHHHHHHHCCSC
T ss_pred             EEEecccccCCCCCHHHHHHHHHHHHHhhcc-CCCEEEEeCCC-CCCCCHHHHH------hhHHHHHHHHHHHHHhCCCC
Confidence            3334443 23579999999999999887754 45666665443 2333422211      12234456778889999999


Q ss_pred             EEEeechhccHHhHHHHH----hcCEEEEeCCcEEec
Q 032207          101 IIGAISGFAVTAGFEIAL----ACDVLVAAKGAKFID  133 (145)
Q Consensus       101 ~Ia~v~G~a~GgG~~l~l----~~D~~ia~~~a~f~~  133 (145)
                      +|+.|-|.+.|||+--..    .+|+++|.++++++.
T Consensus       414 ~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~V  450 (531)
T 3n6r_B          414 MVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVAV  450 (531)
T ss_dssp             EEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES
T ss_pred             EEEEEcCCccchhhhhccCccCCCCeEEEcCCceEec
Confidence            999999999998874333    299999999998864

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=94.50  E-value=0.21  Score=40.42  Aligned_cols=96  Identities=15%  Similarity=0.109  Sum_probs=67.6

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           30 LNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        30 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      ...++++-.+...+.++.+++ ..+-+|.|.-.. .|..|.+-+.      ........+.+..+.....|+|+.|-|.+
T Consensus       339 ~G~~~~~~a~Kaar~i~~~~~-~~iPlv~lvDtp-Gf~~G~~~E~------~Gi~~~~A~~l~a~a~~~vP~itvI~g~~  410 (523)
T 1on3_A          339 SGCLDINASDKAAEFVNFCDS-FNIPLVQLVDVP-GFLPGVQQEY------GGIIRHGAKMLYAYSEATVPKITVVLRKA  410 (523)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHH-TTCCEEEEEEEC-CBCCCHHHHH------TTHHHHHHHHHHHHHHCCSCEEEEEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeCC-CcCcchHHHH------hhHHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            357999999999999988864 345566555432 2444432211      12233446677788899999999999999


Q ss_pred             cHHhHHHHHh----cCEEEEeCCcEEec
Q 032207          110 VTAGFEIALA----CDVLVAAKGAKFID  133 (145)
Q Consensus       110 ~GgG~~l~l~----~D~~ia~~~a~f~~  133 (145)
                      .|||+--...    +|+++|-++++++.
T Consensus       411 ~Ggg~~am~~~~~~~d~~~a~p~a~~~V  438 (523)
T 1on3_A          411 YGGSYLAMCNRDLGADAVYAWPSAEIAV  438 (523)
T ss_dssp             EHHHHHTTTCGGGTCSEEEECTTCEEES
T ss_pred             ccHHHHHhcccCCCCCEEEEcCCCeEEe
Confidence            9988754433    89999999998864

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=94.50  E-value=0.031  Score=47.30  Aligned_cols=37  Identities=14%  Similarity=0.056  Sum_probs=33.9

Q ss_pred             CCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEec
Q 032207           97 CRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFID  133 (145)
Q Consensus        97 ~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~  133 (145)
                      ...|+|+++.|+|.|||.-++..||++|+.+++.+.+
T Consensus       258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~l  294 (793)
T 2x24_A          258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIIL  294 (793)
T ss_dssp             HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEES
T ss_pred             CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEe
Confidence            4699999999999999999999999999999987754

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=94.36  E-value=0.29  Score=39.87  Aligned_cols=107  Identities=16%  Similarity=0.186  Sum_probs=71.1

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCC
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCR   98 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (145)
                      |.+|--+.....-.++.+-.+...+.++.+++. .+-+|.|.-.+ .|..|.+-+.      ........+.+..+....
T Consensus       349 Vgvian~~~~~~G~l~~~~a~Kaar~i~~a~~~-~iPlv~lvDt~-Gf~~G~~~E~------~Gi~~~ga~~l~a~~~~~  420 (548)
T 2bzr_A          349 VGIVANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDVP-GFLPGTDQEY------NGIIRRGAKLLYAYGEAT  420 (548)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-CBCCCHHHHH------TTHHHHHHHHHHHHHHCC
T ss_pred             EEEEEECCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeecc-CCCCChHHHH------hhHHHHHHHHHHHHhCCC
Confidence            443433322233579999999999999998754 45566555432 2444433221      111233456677788899


Q ss_pred             ccEEEeechhccHHhHHHH----HhcCEEEEeCCcEEec
Q 032207           99 KPIIGAISGFAVTAGFEIA----LACDVLVAAKGAKFID  133 (145)
Q Consensus        99 kp~Ia~v~G~a~GgG~~l~----l~~D~~ia~~~a~f~~  133 (145)
                      .|+|+.|-|.+.|||+--.    +.+|+++|.++++++.
T Consensus       421 VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~V  459 (548)
T 2bzr_A          421 VPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV  459 (548)
T ss_dssp             SCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES
T ss_pred             CCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCCEEEe
Confidence            9999999999999887543    3499999999998864

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=92.73  E-value=0.74  Score=37.57  Aligned_cols=95  Identities=15%  Similarity=0.088  Sum_probs=67.5

Q ss_pred             CCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207           31 NSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV  110 (145)
Q Consensus        31 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~  110 (145)
                      -.++.+-.+...+.++.+++. .+-+|.|.-.++ |..|.+-++      ........+++..+.....|+|+.+-|.+.
T Consensus       366 G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtpG-f~~G~~~E~------~Gi~~~gAk~~~a~~~a~vP~itvi~g~~~  437 (555)
T 3u9r_B          366 GILFAEAAQKGAHFIELACQR-GIPLLFLQNITG-FMVGQKYEA------GGIAKHGAKLVTAVACARVPKFTVLIGGSF  437 (555)
T ss_dssp             SSBCHHHHHHHHHHHHHHHHH-TCCEEEEEEECC-BCCSHHHHH------TTHHHHHHHHHHHHHHCCSCEEEEEEEEEE
T ss_pred             CccCHHHHHHHHHHHHHHhcC-CCCEEEEecCcC-CCCCHHHHH------HHHHHHHHHHHHHHHhCCCCEEEEEeCCcc
Confidence            578999999999999988753 466777665443 444433221      122334567788899999999999999988


Q ss_pred             HHhHHHH----HhcCEEEEeCCcEEec
Q 032207          111 TAGFEIA----LACDVLVAAKGAKFID  133 (145)
Q Consensus       111 GgG~~l~----l~~D~~ia~~~a~f~~  133 (145)
                      |+|.--.    +.+|+++|.++++++.
T Consensus       438 Ggg~~am~~~~~~~d~~~a~p~A~i~V  464 (555)
T 3u9r_B          438 GAGNYGMCGRAYDPRFLWMWPNARIGV  464 (555)
T ss_dssp             TTHHHHTTCGGGCCSEEEECTTCEEES
T ss_pred             chhhHhhcCccCCCCeEEEcCCcEEEc
Confidence            8764322    2379999999998875

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=91.42  E-value=1.6  Score=35.89  Aligned_cols=95  Identities=8%  Similarity=0.112  Sum_probs=69.0

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           30 LNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        30 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      .-.++++-.+...+.++.+++ ..+-+|.|.-.. .|..|.+-+.      ........+++..+.....|+|+.|-|.+
T Consensus       384 ~G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDtp-Gf~~G~~~E~------~Gi~~~gA~~~~a~a~a~vP~itvI~g~~  455 (587)
T 1pix_A          384 GGKLYRQGLVKMNEFVTLCAR-DRLPIVWIQDTT-GIDVGNDAEK------AELLGLGQSLIYSIQTSHIPQFEITLRKG  455 (587)
T ss_dssp             TTEECHHHHHHHHHHHHHHHH-TTCCEEEEECCC-EECCSHHHHH------TTHHHHHHHHHHHHHTCCCCEEEEECSEE
T ss_pred             CCCcCHHHHHHHHHHHHHhhc-CCCCeEEEecCC-CCCCcHHHHH------HHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            457899999999999987764 456677666543 3444433221      12234456778889999999999999999


Q ss_pred             cHHhHHHHHh-----c--CEEEEeCCcEEec
Q 032207          110 VTAGFEIALA-----C--DVLVAAKGAKFID  133 (145)
Q Consensus       110 ~GgG~~l~l~-----~--D~~ia~~~a~f~~  133 (145)
                      .|||+ ++++     .  |+++|.++++++.
T Consensus       456 ~Ggg~-~am~~~~~~~~~d~~~a~p~A~~~V  485 (587)
T 1pix_A          456 TAAAH-YVLGGPQGNDTNAFSIGTAATEIAV  485 (587)
T ss_dssp             ETTHH-HHTTCTTCTTTEEEEEECTTCEEES
T ss_pred             ccHHH-HHhcCcccCcccceeeeccCCeEec
Confidence            88874 5555     5  9999999998874

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=91.20  E-value=0.34  Score=40.85  Aligned_cols=95  Identities=20%  Similarity=0.219  Sum_probs=68.3

Q ss_pred             CCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeec--hh
Q 032207           31 NSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAIS--GF  108 (145)
Q Consensus        31 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~--G~  108 (145)
                      ..++++-.+...+.++.+++...+-+|.|.-. +.|..|.+-+.      ........+++..+...+.|+|+.|-  |.
T Consensus       447 G~l~pe~a~KaArfI~lcd~~f~iPLv~LvDt-pGf~~G~~aE~------~Gi~k~gAkll~A~a~a~VP~itVI~RkGe  519 (758)
T 3k8x_A          447 QVWHPNSAFKTAQAINDFNNGEQLPMMILANW-RGFSGGQRDMF------NEVLKYGSFIVDALVDYKQPIIIYIPPTGE  519 (758)
T ss_dssp             TEECHHHHHHHHHHHHHHHHTSCCCEEECCCC-CEECCSHHHHH------TTHHHHHHHHHHHHHTCCSCEEEEECTTCE
T ss_pred             CCCCHHHHHHHHHHHHHhhhccCCCEEEEecC-CCCCCCHHHHH------ccHHHHHHHHHHHHHhCCCCEEEEEecCCc
Confidence            46889999999999999886345666665543 44666644222      22234456788899999999999998  88


Q ss_pred             ccHHhHHHHHh----cCE--EEEeCCcEEec
Q 032207          109 AVTAGFEIALA----CDV--LVAAKGAKFID  133 (145)
Q Consensus       109 a~GgG~~l~l~----~D~--~ia~~~a~f~~  133 (145)
                      +.||++ ++++    +|+  ++|-++++++.
T Consensus       520 ~~GGA~-~am~~~~~ad~~~v~Awp~A~isV  549 (758)
T 3k8x_A          520 LRGGSW-VVVDPTINADQMEMYADVNARAGV  549 (758)
T ss_dssp             EETHHH-HTTCGGGSTTTEEEEEETTCEEES
T ss_pred             cchHHH-HHhCcccCCCHHHHhcCCCCEEEc
Confidence            988777 5554    666  88888887764

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=89.13  E-value=0.72  Score=34.29  Aligned_cols=58  Identities=17%  Similarity=0.276  Sum_probs=33.4

Q ss_pred             HHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHhHH
Q 032207           40 DMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFE  115 (145)
Q Consensus        40 ~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~  115 (145)
                      .+.+.|+.+.+||++++|++.+++.     .|.+           ....+..+.  ...||+|+..-|..--.|-.
T Consensus       186 ~~~d~l~~~~~D~~t~~I~l~~E~~-----~~~~-----------~~~~~~~~~--~~~KPVv~~k~G~~~~~~~~  243 (288)
T 1oi7_A          186 TFKDLLPLFNEDPETEAVVLIGEIG-----GSDE-----------EEAAAWVKD--HMKKPVVGFIGGRSAPKGKR  243 (288)
T ss_dssp             CHHHHHHHHHTCTTCCEEEEEECSS-----SSHH-----------HHHHHHHHH--HCCSCEEEEESCC-------
T ss_pred             CHHHHHHHHhcCCCCCEEEEEEeeC-----CCHH-----------HHHHHHHHh--cCCCCEEEEEecCCCCcccc
Confidence            3567777788888888888888641     1111           111222222  67999999999987744433

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=88.83  E-value=0.68  Score=34.52  Aligned_cols=55  Identities=22%  Similarity=0.421  Sum_probs=32.1

Q ss_pred             HHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHh
Q 032207           40 DMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAG  113 (145)
Q Consensus        40 ~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG  113 (145)
                      .+.+.|+.+.+||++++|++.+++.     .|.+              ....+.+....||+|+..-|..--.|
T Consensus       192 ~~~d~l~~~~~D~~T~~I~l~~E~~-----g~~~--------------~~~~~~~~~~~KPVv~~k~G~~~~~g  246 (294)
T 2yv1_A          192 RYKEVLDLFEKDDETEAIVMIGEIG-----GGAE--------------EEAAKFIEKMKKPVIGYIAGQSAPEG  246 (294)
T ss_dssp             CHHHHHHHHHTCTTCSEEEEEEESS-----SSHH--------------HHHHHHHTTCSSCEEEEEECC-----
T ss_pred             CHHHHHHHHhcCCCCCEEEEEEeeC-----CCHH--------------HHHHHHHHhCCCCEEEEEecCCCCcc
Confidence            3566777777788888888887531     1111              11222333479999999999876333

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=87.98  E-value=1.4  Score=36.21  Aligned_cols=94  Identities=13%  Similarity=0.164  Sum_probs=67.4

Q ss_pred             CCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207           31 NSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV  110 (145)
Q Consensus        31 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~  110 (145)
                      ..++++-.+.-.+.++.+++. ++-+|.|.-.. .|..|.+-++      ........+++..+....+|.|+.|-|.+.
T Consensus       387 G~l~~~~a~Kaarfi~lcd~f-~iPlv~lvDtp-Gf~~G~~aE~------~Gi~~~gAk~l~a~a~a~VP~itvI~g~~~  458 (588)
T 3gf3_A          387 GKLYRQGLIKMNEFVTLCARD-RIPLIWLQDTT-GIDVGDEAEK------AELLGLGQSLIYSIENSKLPSLEITIRKAS  458 (588)
T ss_dssp             TEECHHHHHHHHHHHHHHHHT-TCCEEEEECCC-EECCSHHHHH------TTHHHHHHHHHHHHHHHCSCEEEEESSEEE
T ss_pred             CCcCHHHHHHHHHHHHHhhhc-CCCeEEEecCC-CCCCCHHHHH------HHHHHHHHHHHHHHHhCCCCEEEEEcCCcc
Confidence            468899999999999988754 46677666543 3555533221      222344567888899999999999999998


Q ss_pred             HHhHHHHHhc-------CEEEEeCCcEEec
Q 032207          111 TAGFEIALAC-------DVLVAAKGAKFID  133 (145)
Q Consensus       111 GgG~~l~l~~-------D~~ia~~~a~f~~  133 (145)
                      |||. +++++       |+++|.++++++.
T Consensus       459 Ggg~-~am~~~~~~~~~~~~~awp~A~~sV  487 (588)
T 3gf3_A          459 AAAH-YVLGGPQGNNTNVFSIGTGACEYYV  487 (588)
T ss_dssp             TTHH-HHTTCTTCTTTEEEEEECTTCEEES
T ss_pred             HHHH-HHhcccccCCccceEEECCCceEEe
Confidence            8776 44443       3889999988875

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=87.55  E-value=0.96  Score=33.56  Aligned_cols=52  Identities=17%  Similarity=0.365  Sum_probs=30.0

Q ss_pred             HHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207           41 MAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV  110 (145)
Q Consensus        41 l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~  110 (145)
                      +.+.++.+.+||++++|++.+++.     .|.           .+...++++.  ...||+|+..-|...
T Consensus       187 ~~d~l~~l~~D~~t~~I~l~~E~~-----~~~-----------~~~~~~~~~~--~~~KPVv~~k~G~~~  238 (288)
T 2nu8_A          187 FIDILEMFEKDPQTEAIVMIGEIG-----GSA-----------EEEAAAYIKE--HVTKPVVGYIAGVTA  238 (288)
T ss_dssp             HHHHHHHHHTCTTCCEEEEEEESS-----SSH-----------HHHHHHHHHH--HCCSCEEEEEECTTC
T ss_pred             HHHHHHHHhcCCCCCEEEEEEeeC-----CCH-----------HHHHHHHHHh--cCCCCEEEEEeCCCC
Confidence            445556666666666666666421     000           0111223333  679999999999876

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=86.18  E-value=1.3  Score=32.95  Aligned_cols=57  Identities=21%  Similarity=0.399  Sum_probs=33.7

Q ss_pred             HHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHh
Q 032207           40 DMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAG  113 (145)
Q Consensus        40 ~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG  113 (145)
                      .+.+.|+.+.+||++++|++.+++     +.|.+           ....++.++ ....||+|+..-|...-.|
T Consensus       193 ~~~d~l~~~~~D~~T~~I~l~~E~-----~~~~~-----------~~~~~~~~~-~~~~KPVv~~k~G~s~~~~  249 (297)
T 2yv2_A          193 SFTEALKLFQEDPQTEALVLIGEI-----GGDME-----------ERAAEMIKK-GEFTKPVIAYIAGRTAPPE  249 (297)
T ss_dssp             CHHHHHHHHHTCTTCSEEEEEECS-----SSSHH-----------HHHHHHHHT-TSCCSCEEEEESCCC----
T ss_pred             CHHHHHHHHhcCCCCCEEEEEEee-----CCCHH-----------HHHHHHHHh-ccCCCCEEEEEeCCCCccc
Confidence            356677777888888888888864     11111           111222222 3579999999999877334

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=85.94  E-value=3.4  Score=35.14  Aligned_cols=95  Identities=16%  Similarity=0.205  Sum_probs=67.4

Q ss_pred             CCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEee--chh
Q 032207           31 NSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAI--SGF  108 (145)
Q Consensus        31 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v--~G~  108 (145)
                      -.++++-.+...+.++.+++ ..+-+|.|.-. +.|..|.+-+.      ........+++..+..+..|+|+.|  .|.
T Consensus       462 G~l~~~~a~KaarfI~~cd~-f~iPlv~LvDt-pGf~~G~~aE~------~Gi~~~gAkll~A~a~a~VP~itvI~r~Ge  533 (793)
T 2x24_A          462 QVWFPDSAYKTAQAIKDFNR-EKLPLMIFANW-RGFSGGMKDMY------DQVLKFGAYIVDGLRKYRQPVLIYIPPYAE  533 (793)
T ss_dssp             TEECHHHHHHHHHHHHHHHT-TTCCEEEECCB-CEECCSHHHHH------TTHHHHHHHHHHHHHTCCSCEEEEECTTCE
T ss_pred             CcccHHHHHHHHHHHHHhcc-CCCCEEEEecC-CCCCCCHHHHH------hhHHHHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            46899999999999999974 45666666544 34555533221      1223445677889999999999999  888


Q ss_pred             ccHHhHHHH---HhcCE--EEEeCCcEEec
Q 032207          109 AVTAGFEIA---LACDV--LVAAKGAKFID  133 (145)
Q Consensus       109 a~GgG~~l~---l~~D~--~ia~~~a~f~~  133 (145)
                      +.||++.+.   +..|+  ++|-++++++.
T Consensus       534 ~~GGa~~~~~~~~~~d~~ev~Awp~A~~~V  563 (793)
T 2x24_A          534 VRGGSWAVMDTSINPLCIEMYADRESRASV  563 (793)
T ss_dssp             EEHHHHHTTCGGGSTTTEEEEEETTCEEES
T ss_pred             ccchhHHhhhcccCccHHHHhhhccCEEEe
Confidence            877766443   45787  78888888864

>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*

Probab=85.82  E-value=1.5  Score=33.44  Aligned_cols=52  Identities=17%  Similarity=0.215  Sum_probs=33.6

Q ss_pred             HHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHh--cCCccEEEeechhccH
Q 032207           41 MAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQME--RCRKPIIGAISGFAVT  111 (145)
Q Consensus        41 l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~--~~~kp~Ia~v~G~a~G  111 (145)
                      +.+.|+.+++||++++|++.|+-...                 .+  .+++..++  +..||+|+..-|...-
T Consensus       211 ~~D~l~~~~~Dp~T~~I~l~gEi~g~-----------------~e--~~~~~~~r~~~~~KPVV~~kaGrs~~  264 (334)
T 3mwd_B          211 FMDHVLRYQDTPGVKMIVVLGEIGGT-----------------EE--YKICRGIKEGRLTKPIVCWCIGTCAT  264 (334)
T ss_dssp             HHHHHHHHHTCTTCCEEEEEEESSSS-----------------HH--HHHHHHHHTTSCCSCEEEEEECTTCC
T ss_pred             HHHHHHHHhcCCCCCEEEEEEecCCh-----------------HH--HHHHHHHHhhcCCCCEEEEEcCCCcc
Confidence            55667777778888888888641100                 01  23334444  3789999999998764

>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}

Probab=83.66  E-value=1.7  Score=34.81  Aligned_cols=55  Identities=20%  Similarity=0.291  Sum_probs=37.4

Q ss_pred             HHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHH
Q 032207           40 DMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTA  112 (145)
Q Consensus        40 ~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~Gg  112 (145)
                      .+.+.++.+.+|+++++|++.+++.        .+          ....+++...++..||+|+..-|..-.+
T Consensus       158 ~~~D~l~~l~~Dp~T~~I~ly~E~~--------~e----------~~~~~f~~~ar~~~KPVV~~k~Grs~~g  212 (480)
T 3dmy_A          158 SALTALEMLSADEKSEVLAFVSKPP--------AE----------AVRLKIVNAMKATGKPTVALFLGYTPAV  212 (480)
T ss_dssp             HHHHHHHHHHTCTTCCEEEEEESCC--------CH----------HHHHHHHHHHHHHCSCEEEEETTCCCSS
T ss_pred             CHHHHHHHHhcCCCCCEEEEEEecC--------Cc----------HHHHHHHHHHHhCCCCEEEEEeCCCCcc
Confidence            4667788888899999999999751        11          0012333333356899999999986543

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=82.64  E-value=2.2  Score=31.94  Aligned_cols=54  Identities=19%  Similarity=0.265  Sum_probs=32.9

Q ss_pred             HHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHH--hcCCccEEEeechhcc
Q 032207           41 MAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQM--ERCRKPIIGAISGFAV  110 (145)
Q Consensus        41 l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l--~~~~kp~Ia~v~G~a~  110 (145)
                      +.+.|+.+.+||++++|++.+++.     .|-           .....++++..  ....||+|+..-|...
T Consensus       195 ~~d~l~~~~~Dp~T~~I~l~~E~~-----g~~-----------e~~~~~f~~~~~~~~~~KPVv~~k~G~s~  250 (305)
T 2fp4_A          195 FTDCLEIFLNDPATEGIILIGEIG-----GNA-----------EENAAEFLKQHNSGPKSKPVVSFIAGLTA  250 (305)
T ss_dssp             HHHHHHHHHHCTTCCEEEEEEESS-----SSH-----------HHHHHHHHHHHSCSTTCCCEEEEEECTTC
T ss_pred             HHHHHHHHhcCCCCcEEEEEEecC-----Cch-----------hhHHHHHHHHHHHhcCCCCEEEEEecCCc
Confidence            456677777788888888877531     010           01122333332  2358999999999876

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}

Probab=82.11  E-value=2.1  Score=36.59  Aligned_cols=53  Identities=21%  Similarity=0.231  Sum_probs=37.2

Q ss_pred             HHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHh--cCCccEEEeechhccHH
Q 032207           41 MAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQME--RCRKPIIGAISGFAVTA  112 (145)
Q Consensus        41 l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~--~~~kp~Ia~v~G~a~Gg  112 (145)
                      +.+.|+.+.+||++++|++.++.     |.              +.+.+..+++.  ...||+|+..-|.+.-+
T Consensus       697 ~~D~L~~l~~Dp~T~~Ivly~Ei-----~g--------------~~f~~aA~~~~~~~~~KPVVa~kaGrsa~~  751 (829)
T 3pff_A          697 FMDHVLRYQDTPGVKMIVVLGEI-----GG--------------TEEYKICRGIKEGRLTKPIVCWCIGTCATM  751 (829)
T ss_dssp             HHHHHHHHHTCTTCCEEEEEEES-----SS--------------SHHHHHHHHHHTTSCCSCEEEEEECSSTTC
T ss_pred             HHHHHHHHhhCCCCCEEEEEEec-----Cc--------------hHHHHHHHHHHhccCCCCEEEEEecCcCcc
Confidence            56777788888888888888861     11              12234455554  68999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	145
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	7e-28
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	3e-23
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	3e-21
d1q52a_	297	c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter	1e-17
d1nzya_	269	c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps	1e-15
d2f6qa1	245	c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C	2e-14
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	2e-13
d1wdka4	310	c.14.1.3 (A:1-310) Fatty oxidation complex alpha s	3e-13
d1hzda_	266	c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T	6e-13
d1ef8a_	261	c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc	3e-11
d1wz8a1	263	c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT	4e-11
d1sg4a1	249	c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d	6e-11
d2fw2a1	258	c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum	6e-11
d1szoa_	249	c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus	3e-10
d2a7ka1	230	c.14.1.3 (A:1-230) Carbapenem biosynthes protein C	3e-10

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  101 bits (253), Expect = 7e-28
 Identities = 36/134 (26%), Positives = 72/134 (53%), Gaps = 2/134 (1%)

Query: 7   ENLILVTRDPM-GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
           + +I   +     +  + +NRPK+LN+L   ++ ++ QA ++ ++D +V  I+L+G  +A
Sbjct: 4   QYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKA 63

Query: 66  FCSGVDLTS-AEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLV 124
           F +G D+       F+             + R +KP+I A++G+A+  G E+A+ CD++ 
Sbjct: 64  FAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIY 123

Query: 125 AAKGAKFIDTHARL 138
           A + A+F      L
Sbjct: 124 AGEKAQFGQPEILL 137

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 89.8 bits (221), Expect = 3e-23
 Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 14/145 (9%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           I VT     + +V +NRP+  N++ R+   ++ + F+ + KD     +++SG+G+ F SG
Sbjct: 5   IQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSG 64

Query: 70  VDLTSA--------------EDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFE 115
           +DL                    +  D+      T   +E+C KP+I AI G  +  G +
Sbjct: 65  IDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVD 124

Query: 116 IALACDVLVAAKGAKFIDTHARLVC 140
           +  ACD+    + A F      +  
Sbjct: 125 LISACDIRYCTQDAFFQVKEVDVGL 149

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 84.0 bits (206), Expect = 3e-21
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 8/142 (5%)

Query: 9   LILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCS 68
           ++ V +    +A V +N P+  N L+  M   + QA   L+ D  V  ++L+G G+AF +
Sbjct: 1   MVQVEKGH--VAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSA 58

Query: 69  GVDLTSAEDVFKGDVKDVETDT------VAQMERCRKPIIGAISGFAVTAGFEIALACDV 122
           G DL   E V +   ++    +        ++    KP + A++G AV  G  +ALACD+
Sbjct: 59  GADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDL 118

Query: 123 LVAAKGAKFIDTHARLVCKISC 144
           +V  + A+   T  ++    + 
Sbjct: 119 VVMDEEARLGYTEVKIGFVAAL 140

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 74.8 bits (182), Expect = 1e-17
 Identities = 18/124 (14%), Positives = 39/124 (31%), Gaps = 21/124 (16%)

Query: 18  GIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDL----- 72
               V  NRP+  N+     + ++ +          V V++L+G+G +   G        
Sbjct: 29  ATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGG 88

Query: 73  ----------------TSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEI 116
                           T+         +    +    +    K +I  ++G+A   G  +
Sbjct: 89  DQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSL 148

Query: 117 ALAC 120
            + C
Sbjct: 149 HVVC 152

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

 Score = 69.1 bits (167), Expect = 1e-15
 Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 9/143 (6%)

Query: 10  ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSG 69
           I    +  G+A +TI  P+  N+L+   M ++  A    ++D+SV  ++++G+  AFC+G
Sbjct: 5   IGHRVED-GVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAG 63

Query: 70  VDLTSAEDVFKGDVKDVETDTVA--------QMERCRKPIIGAISGFAVTAGFEIALACD 121
             L                   A        ++ R ++P++ AI+G A   G  I+LA D
Sbjct: 64  FYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASD 123

Query: 122 VLVAAKGAKFIDTHARLVCKISC 144
           + + A  AKF+     +      
Sbjct: 124 MAICADSAKFVCAWHTIGIGNDT 146

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (159), Expect = 2e-14
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 10/136 (7%)

Query: 7   ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAF 66
           E L++ + D  GI  +  NRPK  N++   M  ++ +A K+  KD+S+ + +L+G+G  +
Sbjct: 3   ETLVVTSED--GITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYY 59

Query: 67  CSGVDLTSAEDVFKGDV-------KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALA 119
            SG DLT+  D+  G V         +  + V       KP+I  ++G AV     +   
Sbjct: 60  SSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGL 119

Query: 120 CDVLVAAKGAKFIDTH 135
            D + A+  A F    
Sbjct: 120 FDAVYASDRATFHTPF 135

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.2 bits (152), Expect = 2e-13
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 1/92 (1%)

Query: 5  KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGR 64
          +    I    +      + +  P +LN+L       + +  +  D++  V   I+  SGR
Sbjct: 2  RQNEKISYRIEG-PFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGR 60

Query: 65 AFCSGVDLTSAEDVFKGDVKDVETDTVAQMER 96
           F SG D          D     ++T   +  
Sbjct: 61 FFSSGADFKGIAKAQGDDTNKYPSETSKWVSN 92

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

 Score = 63.2 bits (152), Expect = 3e-13
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 10 ILVTRDPMGIAYVTIN-RPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCS 68
          I VT    GI  +  + + +S+N   R  + ++ QA  ++  D SV  +I+S     F  
Sbjct: 8  ITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIV 67

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (148), Expect = 6e-13
 Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 4/131 (3%)

Query: 12  VTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVD 71
           +  +  GI  + INR    NSL+++++  +++A  +L  D+ V  II+            
Sbjct: 9   LEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGA 68

Query: 72  LT----SAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAK 127
                        G         +  +     P I AI G A+  G E+ALACD+ VAA 
Sbjct: 69  DLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAAS 128

Query: 128 GAKFIDTHARL 138
            AK      +L
Sbjct: 129 SAKMGLVETKL 139

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 57.2 bits (136), Expect = 3e-11
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 6  SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIIL 59
          S   + V      +A +  N  + LN+L++  + D+ QA   L++ E   +I+ 
Sbjct: 2  SYQYVNVVTIN-KVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPEIRCIILR 54

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

 Score = 56.8 bits (135), Expect = 4e-11
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFC 67
          +       G+  +T  R + LN++  ++   +A+ ++ L+  E V  ++L G G  F 
Sbjct: 11 LAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFS 67

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 6e-11
 Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 6  SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRA 65
          S+ +++      G+A +    P  +NSL+   + ++  + + L+ D+S   +IL+     
Sbjct: 1  SQRVLVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPG 59

Query: 66 FC 67
            
Sbjct: 60 VF 61

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 6e-11
 Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 7  ENLILVTRDPMGIAYVTIN-RPKSLNSLTRSMMADMAQAFKSLDKDESVLVII 58
           ++++   D  G   + ++ R    N+L   ++ +M  A  S   D+S LV+ 
Sbjct: 2  RDIVVKKED--GFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLF 52

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 54.3 bits (129), Expect = 3e-10
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVI 57
          I + RD  G+  VT++        T +   ++A  F  +  D    V+
Sbjct: 15 IRLERDG-GVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVV 61

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

 Score = 54.1 bits (128), Expect = 3e-10
 Identities = 8/45 (17%), Positives = 21/45 (46%)

Query: 10 ILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESV 54
          ++   +   +  +T++ P   N  +R++   +  A    + D+SV
Sbjct: 1  MVFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSV 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	145
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	97.45
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	97.39
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	97.26
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	97.14
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	97.13
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	96.73
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	96.68
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	96.65
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	96.6
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	96.27
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	96.18
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	96.04
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	95.94
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	95.9
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	95.84
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	95.59
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	94.65
d2csua2	161	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	88.69
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	86.42
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	84.46
d1oi7a2	167	Succinyl-CoA synthetase, alpha-chain, C-terminal d	82.66

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.3e-40  Score=245.68  Aligned_cols=139  Identities=25%  Similarity=0.475  Sum_probs=121.4

Q ss_pred             CCCCcEEEEEcC--CcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc-
Q 032207            5 KSENLILVTRDP--MGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG-   81 (145)
Q Consensus         5 ~~~~~i~~~~~~--~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~-   81 (145)
                      .+++.|.+++.+  ++|++||||||+++|+||.+|+.+|.++++++++|+++|+|||+|.|+.||+|.|++++...... 
T Consensus         1 ~~~~~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~   80 (260)
T d1mj3a_           1 ANFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQD   80 (260)
T ss_dssp             CCCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHH
T ss_pred             CCCeEEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccchhhhhhccchhh
Confidence            368899999862  58999999999999999999999999999999999999999999999999999999987543221 


Q ss_pred             CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           82 DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        82 ~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      .....+.+++..+.++|||+||+|||+|+|||++|+++||||||+++++|++||+++|+.|+
T Consensus        81 ~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~  142 (260)
T d1mj3a_          81 CYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPG  142 (260)
T ss_dssp             HHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCC
T ss_pred             hhHHHHHHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCc
Confidence            11223345567889999999999999999999999999999999999999999999987654

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-39  Score=241.04  Aligned_cols=138  Identities=17%  Similarity=0.247  Sum_probs=120.7

Q ss_pred             CCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC--
Q 032207            5 KSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD--   82 (145)
Q Consensus         5 ~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~--   82 (145)
                      .+++.|.++.+ ++|++|+||||+++|++|.+|+.+|.++++++++|+++++|||+|.|++||+|+|++++.......  
T Consensus         2 ~~~e~i~~~~~-~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~   80 (266)
T d1pjha_           2 RQNEKISYRIE-GPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTN   80 (266)
T ss_dssp             CCBTTEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------
T ss_pred             CCCCeEEEEEE-CCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhHHHHHhccccccc
Confidence            46788999997 999999999999999999999999999999999999999999999999999999999986543221  


Q ss_pred             ------------cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeC-CcEEeccceeeeecCC
Q 032207           83 ------------VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAK-GAKFIDTHARLVCKIS  143 (145)
Q Consensus        83 ------------~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~-~a~f~~pe~~~G~~~g  143 (145)
                                  .......++..+.++|||+||+|||+|+|||++|+++||+|||++ +++|++||+++|+.|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~  154 (266)
T d1pjha_          81 KYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITE  154 (266)
T ss_dssp             CCSSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCC
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhccccccccccccccccc
Confidence                        112334567789999999999999999999999999999999975 5899999999998664

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.3e-39  Score=238.90  Aligned_cols=139  Identities=25%  Similarity=0.439  Sum_probs=122.5

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcc-
Q 032207            6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVK-   84 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~-   84 (145)
                      .|+.+.++..+++|++||||||+++|+||.+|+++|.++++++++|+++|+|||+|.|+.||+|+|+.++......... 
T Consensus         1 ~y~~l~~~~~~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~~   80 (275)
T d1dcia_           1 AYESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGD   80 (275)
T ss_dssp             CCSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCS
T ss_pred             CCceEEEEEccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccCccHHHhhhcccccccc
Confidence            3788888765588999999999999999999999999999999999999999999999999999999987654333211 


Q ss_pred             -------------cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           85 -------------DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        85 -------------~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                                   ...++.+..+.++|||+||++||+|+|||++|+++|||||++++++|++||+++|+.|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~  153 (275)
T d1dcia_          81 DVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADV  153 (275)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCS
T ss_pred             cccchhhhhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhccccccccc
Confidence                         123456778999999999999999999999999999999999999999999999877763

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=1.3e-38  Score=233.02  Aligned_cols=133  Identities=23%  Similarity=0.408  Sum_probs=117.8

Q ss_pred             EEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhcccC----ccc
Q 032207           11 LVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKGD----VKD   85 (145)
Q Consensus        11 ~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~~----~~~   85 (145)
                      .++.++++|++||||||++.|++|.+|+.+|.++++++++|+++|+|||+|.| ++||+|.|++++.......    ...
T Consensus         2 ~~~~~~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~   81 (230)
T d2a7ka1           2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWID   81 (230)
T ss_dssp             EEEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHH
T ss_pred             EEEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccccccccchh
Confidence            34455589999999999999999999999999999999999999999999987 8999999999987643321    223


Q ss_pred             HHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           86 VETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        86 ~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      .+.+++.++.++|||+||++||+|+|||++|+++||+|||+++++|++||+++|++|+
T Consensus        82 ~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~  139 (230)
T d2a7ka1          82 RVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCS  139 (230)
T ss_dssp             HHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCH
T ss_pred             hhhhhhhcccchhcceeeecccccccccccchhccchhhccccchhhhcccccccccc
Confidence            4567788999999999999999999999999999999999999999999999998874

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=4.5e-38  Score=239.20  Aligned_cols=138  Identities=27%  Similarity=0.329  Sum_probs=123.9

Q ss_pred             CCcEEEEEcCCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcc-
Q 032207            7 ENLILVTRDPMGIAYVTIN-RPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVK-   84 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~-~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~-   84 (145)
                      ++.+++++.+++|++|+|| +|++.|+||.+|+++|.++++++++|+++|+|||+|.|+.||+|+|++++......... 
T Consensus         5 ~~~i~~~~~~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   84 (310)
T d1wdka4           5 GKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAE   84 (310)
T ss_dssp             CSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHHH
T ss_pred             CceEEEEEecCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhcccccchh
Confidence            5788898866889999998 78899999999999999999999999999999999999999999999998765443221 


Q ss_pred             -----cHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           85 -----DVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        85 -----~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                           ...++++.+|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|+.|+.
T Consensus        85 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~  149 (310)
T d1wdka4          85 LIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGF  149 (310)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCS
T ss_pred             hhhhhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccc
Confidence                 124567889999999999999999999999999999999999999999999999988763

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.1e-38  Score=234.20  Aligned_cols=135  Identities=22%  Similarity=0.349  Sum_probs=119.7

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC--CCcccccCCchhhhhhccc--C
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS--GRAFCSGVDLTSAEDVFKG--D   82 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~--g~~F~~G~dl~~~~~~~~~--~   82 (145)
                      +++|.++.+ |+|++|+||||+++|+||.+|+++|.+++++++ ++++++|||+|.  |+.||+|+|++++......  .
T Consensus         3 ~~~i~~~~~-~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~-~~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~~~   80 (261)
T d1ef8a_           3 YQYVNVVTI-NKVAVIEFNYGRKLNALSKVFIDDLMQALSDLN-RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLS   80 (261)
T ss_dssp             CSSEEEEEE-TTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTC-STTCCEEEEECCTTCSEEECCSCSTTC-----CTTC
T ss_pred             CCEEEEEEE-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEeccccchhhcccccccccccCCccccc
Confidence            678999997 999999999999999999999999999999998 457999999986  5899999999987653322  2


Q ss_pred             cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           83 VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      ..+.++++++++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++++
T Consensus        81 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~  141 (261)
T d1ef8a_          81 YDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYN  141 (261)
T ss_dssp             TTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCC
T ss_pred             cccchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccc
Confidence            3456778899999999999999999999999999999999999999999999999988776

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.4e-38  Score=234.93  Aligned_cols=138  Identities=25%  Similarity=0.378  Sum_probs=122.4

Q ss_pred             CCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc----
Q 032207            6 SENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG----   81 (145)
Q Consensus         6 ~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~----   81 (145)
                      .++.+.+++.+++|++|+| ||++.|++|.+|+++|.++++++++|+++|+|||+|.|++||+|+|++++......    
T Consensus         7 ~~~~i~~~~~~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~   85 (263)
T d1wz8a1           7 RYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEAL   85 (263)
T ss_dssp             HCTTEEEEEEETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHH
T ss_pred             CCCeEEEEEcCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhhccccccc
Confidence            4788999886588999999 78889999999999999999999999999999999999999999999987653221    


Q ss_pred             -CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCCC
Q 032207           82 -DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKISC  144 (145)
Q Consensus        82 -~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g~  144 (145)
                       ......++++..+.++|||+||++||+|+|||++|+++||+||++++++|++||+++|+.|+.
T Consensus        86 ~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~  149 (263)
T d1wz8a1          86 LRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGD  149 (263)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTT
T ss_pred             ccchhhhhHHHHHhhhhhcceeeecccccccccccccccccccccccccccccccccccccccc
Confidence             112234567888999999999999999999999999999999999999999999999887764

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-37  Score=230.11  Aligned_cols=135  Identities=28%  Similarity=0.414  Sum_probs=117.2

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCc---
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDV---   83 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~---   83 (145)
                      ++.|.++++ ++|++|+||||+++|++|.+|+.+|.++++++++|+.+ +||++|.|++||+|+|++++........   
T Consensus         2 ~~~i~~~~~-~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   79 (245)
T d2f6qa1           2 FETLVVTSE-DGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEK   79 (245)
T ss_dssp             CSSEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHH
T ss_pred             cceEEEEEE-CCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCCCccccCCccchhhhcccccccccc
Confidence            678999997 89999999999999999999999999999999999876 8999999999999999999765433211   


Q ss_pred             ----ccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           84 ----KDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        84 ----~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                          ...+++++++|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|+
T Consensus        80 ~~~~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~  143 (245)
T d2f6qa1          80 AKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPE  143 (245)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCC
T ss_pred             cchhhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCcc
Confidence                122356778899999999999999999999999999999999999999999999987765

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.5e-37  Score=229.54  Aligned_cols=128  Identities=29%  Similarity=0.409  Sum_probs=114.9

Q ss_pred             CCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCc------ccHHHH
Q 032207           16 PMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDV------KDVETD   89 (145)
Q Consensus        16 ~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~------~~~~~~   89 (145)
                      +|+|++||||||+++|++|.+|+.+|.++++++++|+++++|||+|.|+.||+|+|++.+........      ....++
T Consensus         6 ~G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~~~~~~~~~~~~~~~~~   85 (253)
T d1uiya_           6 KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMR   85 (253)
T ss_dssp             CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             eCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhccccCcccccchhhhhhh
Confidence            37899999999999999999999999999999999999999999999999999999988765443321      123356


Q ss_pred             HHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           90 TVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        90 ~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      ++..+.++|||+||+|||+|+|||++|+++|||||++++++|++||.++|++++
T Consensus        86 ~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~  139 (253)
T d1uiya_          86 LFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAA  139 (253)
T ss_dssp             HHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCH
T ss_pred             hhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhcccccccc
Confidence            677899999999999999999999999999999999999999999999988764

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=1.4e-37  Score=232.06  Aligned_cols=136  Identities=25%  Similarity=0.365  Sum_probs=120.8

Q ss_pred             CCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc-----
Q 032207            7 ENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG-----   81 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~-----   81 (145)
                      |+.|.++.+ |+|++|+||||+++|++|.+|+.+|.++++++++|+++++|||+|.|+.||+|+|++++......     
T Consensus         2 y~~i~~~i~-dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~   80 (269)
T d1nzya_           2 YEAIGHRVE-DGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRD   80 (269)
T ss_dssp             CSSEEEEEE-TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHH
T ss_pred             CCceEEEEE-CCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCcccccchhhHHHHhhcccccchhh
Confidence            577999997 99999999999999999999999999999999999999999999999999999999986432111     


Q ss_pred             ---CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           82 ---DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        82 ---~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                         .....+++++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||.++|++++
T Consensus        81 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~  145 (269)
T d1nzya_          81 HFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGND  145 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCC
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccc
Confidence               01123456778899999999999999999999999999999999999999999999977765

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-37  Score=229.82  Aligned_cols=135  Identities=23%  Similarity=0.390  Sum_probs=120.2

Q ss_pred             CCcEEEEEcCCcEEEEEEc-CCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC---
Q 032207            7 ENLILVTRDPMGIAYVTIN-RPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD---   82 (145)
Q Consensus         7 ~~~i~~~~~~~~v~~i~l~-~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~---   82 (145)
                      |+.|.++++ ++|++|++| ||+++|++|.+|+++|.++++.+++| +.++|||+|.|++||+|+|++++.......   
T Consensus         1 y~~i~v~~~-~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d-~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~   78 (258)
T d2fw2a1           1 YRDIVVKKE-DGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNT   78 (258)
T ss_dssp             CCSEEEEEE-TTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHS-SCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHH
T ss_pred             CceEEEEEE-CCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCccccccccccchhhhcccccccc
Confidence            578999997 999999997 78899999999999999999999987 469999999999999999999976543221   


Q ss_pred             ----cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           83 ----VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        83 ----~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                          ..+.+++++..+.++|||+||+|||+|+|||++++++||+||++++++|++||+++|+.|+
T Consensus        79 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~  143 (258)
T d2fw2a1          79 ASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPD  143 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCC
T ss_pred             hhhHHHHHHHHHHHhhhccceeeeeecccccccccccccccccccceecccceeecccccccccc
Confidence                2234567788999999999999999999999999999999999999999999999988765

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-37  Score=228.14  Aligned_cols=131  Identities=29%  Similarity=0.448  Sum_probs=115.9

Q ss_pred             EEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCC-CcccccCCchhhhhhccc---CcccHHH
Q 032207           13 TRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSG-RAFCSGVDLTSAEDVFKG---DVKDVET   88 (145)
Q Consensus        13 ~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g-~~F~~G~dl~~~~~~~~~---~~~~~~~   88 (145)
                      +.++++|++|+||||+++|++|.+|+++|.++++.+++|+++++|||+|.| ++||+|.|++.+......   .....++
T Consensus        10 ~~~~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~~~~~~~~~~~   89 (266)
T d1hzda_          10 EEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIR   89 (266)
T ss_dssp             CGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHH
T ss_pred             EEecCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccchhhhhhhhHHH
Confidence            344467999999999999999999999999999999999999999999988 689999999887654332   1234456


Q ss_pred             HHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEeccceeeeecCC
Q 032207           89 DTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFIDTHARLVCKIS  143 (145)
Q Consensus        89 ~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~pe~~~G~~~g  143 (145)
                      ++++.+.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|+.|+
T Consensus        90 ~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~  144 (266)
T d1hzda_          90 AVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPG  144 (266)
T ss_dssp             HHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCC
T ss_pred             HHHHHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCC
Confidence            7788999999999999999999999999999999999999999999999987775

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=7.1e-36  Score=220.79  Aligned_cols=139  Identities=24%  Similarity=0.309  Sum_probs=121.6

Q ss_pred             CCCCCcEEEEEcCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccC-
Q 032207            4 TKSENLILVTRDPMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGD-   82 (145)
Q Consensus         4 ~~~~~~i~~~~~~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~-   82 (145)
                      +..|+.|+++++ ++|++|+||||++.|++|.+|+.+|.++++++++|+++|+|||+|.|++||+|.|++++....... 
T Consensus         9 ~~~y~~i~~~~~-~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~   87 (249)
T d1szoa_           9 SQKYENIRLERD-GGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDW   87 (249)
T ss_dssp             TTSCTTEEEEEE-TTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHH
T ss_pred             hCCCCeEEEEEE-CCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeecccccccccchhhhhhcccccch
Confidence            356889999998 999999999999999999999999999999999999999999999999999999999874432221 


Q ss_pred             --cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEe-ccceeeeecCCC
Q 032207           83 --VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFI-DTHARLVCKISC  144 (145)
Q Consensus        83 --~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~-~pe~~~G~~~g~  144 (145)
                        ....++++++++.++|||+|++++|+|.| |++|+++||+||++++++|. +||+++|+.|+.
T Consensus        88 ~~~~~~~~~l~~~i~~~~~pvIa~v~g~~~G-G~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~  151 (249)
T d1szoa_          88 DEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAESATFQDGPHFPSGIVPGD  151 (249)
T ss_dssp             HHHHHHHHHHHHHHHHCCSCEEEEECSCBCS-STHHHHTSSEEEEETTCEEECTTSGGGTCCCTT
T ss_pred             hhhhhhhhhhhhhcccCcccceeeecccccc-ccccccccccccccCCcEEEEeecccccccccc
Confidence              12345677889999999999999998855 77999999999999999995 799999887763

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=1e-35  Score=219.89  Aligned_cols=135  Identities=21%  Similarity=0.342  Sum_probs=115.1

Q ss_pred             CcEEEEEc-CCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCC-cccccCCchhhhhhccc---C
Q 032207            8 NLILVTRD-PMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGR-AFCSGVDLTSAEDVFKG---D   82 (145)
Q Consensus         8 ~~i~~~~~-~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~-~F~~G~dl~~~~~~~~~---~   82 (145)
                      +.+.++.+ +++|++|+||||+ .|+||.+|+++|.++++.+++|+++++|||+|.|+ +||+|.|++++......   .
T Consensus         2 ~~ilve~~~~~gIa~itln~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~~~~~~~   80 (249)
T d1sg4a1           2 QRVLVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAG   80 (249)
T ss_dssp             CSEEEEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHH
T ss_pred             CcEEEEEECCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccccccccccc
Confidence            34555553 3679999999996 79999999999999999999999999999999885 79999999987543222   1


Q ss_pred             cccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCCcEE--eccceeeeecCC
Q 032207           83 VKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKF--IDTHARLVCKIS  143 (145)
Q Consensus        83 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f--~~pe~~~G~~~g  143 (145)
                      ....++++++++.++|||+||+|||+|+|||++|+++||+||++++++|  ++||+++|+.|+
T Consensus        81 ~~~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~  143 (249)
T d1sg4a1          81 YWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAP  143 (249)
T ss_dssp             HHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCC
T ss_pred             cchhhHHHHHhhhcCccccchhhcccccccccccccccccceeeccccccccccccccccccc
Confidence            2234567788999999999999999999999999999999999999977  689999998653

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.3e-34  Score=218.63  Aligned_cols=138  Identities=22%  Similarity=0.286  Sum_probs=109.2

Q ss_pred             CCCcEEEEEc-CCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcC-------CCcccccCCchhhhh
Q 032207            6 SENLILVTRD-PMGIAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGS-------GRAFCSGVDLTSAED   77 (145)
Q Consensus         6 ~~~~i~~~~~-~~~v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~-------g~~F~~G~dl~~~~~   77 (145)
                      +.+.|.++++ +++|++||||||+++|++|.+|+.+|.++++++++|+++|+|||+|.       |+.||+|.|++....
T Consensus        16 ~~~~i~~~~~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~   95 (297)
T d1q52a_          16 DLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGR   95 (297)
T ss_dssp             TCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-------
T ss_pred             CCcceEEEEEccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhcc
Confidence            3466888763 58999999999999999999999999999999999999999999997       456777778765432


Q ss_pred             hccc--------------CcccHHHHHHHHHhcCCccEEEeechhccHHhHHHHHhcCEEEEeCC-cEEeccceeeeecC
Q 032207           78 VFKG--------------DVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEIALACDVLVAAKG-AKFIDTHARLVCKI  142 (145)
Q Consensus        78 ~~~~--------------~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~-a~f~~pe~~~G~~~  142 (145)
                      ....              .....+.++.+.|..+|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|++|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~p  175 (297)
T d1q52a_          96 SGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFD  175 (297)
T ss_dssp             ----------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCCC
T ss_pred             cccccccccccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeecccccc
Confidence            2111              01123456788899999999999999999999999999999999876 58999999998665


Q ss_pred             C
Q 032207          143 S  143 (145)
Q Consensus       143 g  143 (145)
                      +
T Consensus       176 ~  176 (297)
T d1q52a_         176 G  176 (297)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=97.45  E-value=0.00065  Score=48.41  Aligned_cols=106  Identities=9%  Similarity=0.053  Sum_probs=70.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCC
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCR   98 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (145)
                      |..+-.+..-+.-+++....+.+..+.+.+.+..- -+|.+.-     |.|..+.+-..... ... .......++.. .
T Consensus        91 v~v~a~Dftv~GGS~g~~~~~K~~~a~e~A~~~~l-PlV~l~~-----sgG~r~~eg~~~l~-~~~-~~~~~~~~ls~-~  161 (253)
T d1on3a1          91 VHAASQDFTVMGGSAGETQSTKVVETMEQALLTGT-PFLFFYD-----SGGARIQEGIDSLS-GYG-KMFFANVKLSG-V  161 (253)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTC-CEEEEEE-----ECSBCGGGTHHHHH-HHH-HHHHHHHHHTT-T
T ss_pred             chhhhchhhhhcccceecccchhhhhHHHHhhcCC-CeEEEEe-----cCCCcccccceecc-ccc-eehHHHHHHhc-c
Confidence            66666665557788999999999999999887653 4454432     23333433111100 001 11112233333 5


Q ss_pred             ccEEEeechhccHHhHHHHHhcCEEEEeCCcEEec
Q 032207           99 KPIIGAISGFAVTAGFEIALACDVLVAAKGAKFID  133 (145)
Q Consensus        99 kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~  133 (145)
                      .|+|+++.|+|.||+......||++|+++++.+.+
T Consensus       162 vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~  196 (253)
T d1on3a1         162 VPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFI  196 (253)
T ss_dssp             SCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEES
T ss_pred             ceEEEEEecCcccceeeccchhhheeccccceEEe
Confidence            89999999999999999999999999999988876

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=97.39  E-value=0.00091  Score=48.48  Aligned_cols=109  Identities=17%  Similarity=0.151  Sum_probs=69.7

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhccc-CcccHHHHHHHHHhcC
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKG-DVKDVETDTVAQMERC   97 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~-~~~~~~~~~~~~l~~~   97 (145)
                      |.++--|..-+.-+++....+.+.++++.+.+.. +-+|.|.-.     .|+.+..-...... ...........++...
T Consensus       106 v~v~a~D~t~~gGs~~~~~~~K~~r~~~lA~~~~-lP~I~l~ds-----~Ga~~~~~~e~~~~~~~~g~~~~~~a~ls~~  179 (287)
T d1pixa2         106 CVVVASDNKKLAGAWVPGQAECLLRASDTAKTLH-VPLVYVLNC-----SGVKFDEQEKVYPNRRGGGTPFFRNAELNQL  179 (287)
T ss_dssp             EEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-CCEEEEECC-----CEECGGGHHHHSSSTTSTTHHHHHHHHHHHT
T ss_pred             EEEEEeccccccccchhhHHHHHHHHHHhhhhcC-CCEEEEecC-----CcccCCcchhhccchhhHHHHHHHHHHHhhc
Confidence            4444444333567888888999999888887654 456655543     33444321111111 1111122223456677


Q ss_pred             CccEEEeechhccHHhHHHHHhcCEEEEeCCcEEec
Q 032207           98 RKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFID  133 (145)
Q Consensus        98 ~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~  133 (145)
                      .+|+|++|-|.|.|||.-.++++|++++.+++.+.+
T Consensus       180 ~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~  215 (287)
T d1pixa2         180 GIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAV  215 (287)
T ss_dssp             TCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEES
T ss_pred             CCCeEEEecCCccccceeccccceeEEecCCeEEEE
Confidence            899999999999999988888888888888887755

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.0011  Score=44.65  Aligned_cols=88  Identities=10%  Similarity=0.081  Sum_probs=64.8

Q ss_pred             CCHHHHHHHHHHHHhhccCC---CeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           33 LTRSMMADMAQAFKSLDKDE---SVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        33 l~~~~~~~l~~~l~~~~~~~---~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      ++.++..++...+..++.++   .+. +.|.+.|      +|+..            ...++..|..++.|+...+.|.|
T Consensus        25 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS~G------G~v~~------------g~~i~d~i~~~~~~v~tv~~G~a   85 (183)
T d1yg6a1          25 VEDHMANLIVAQMLFLEAENPEKDIY-LYINSPG------GVITA------------GMSIYDTMQFIKPDVSTICMGQA   85 (183)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEECC------BCHHH------------HHHHHHHHHHSSSCEEEEEEEEE
T ss_pred             ECHHHHHHHHHHHHHhhhhccCCceE-EEEeCCC------ccHHH------------HHHHHHHHHhCCCCEEEEEEEEe
Confidence            67888888888888776432   333 4445543      33322            24456788889999999999999


Q ss_pred             cHHhHHHHHhcC--EEEEeCCcEEeccceeee
Q 032207          110 VTAGFEIALACD--VLVAAKGAKFIDTHARLV  139 (145)
Q Consensus       110 ~GgG~~l~l~~D--~~ia~~~a~f~~pe~~~G  139 (145)
                      .+.|.-+.+++|  .|++.++++|-+-+...|
T Consensus        86 aS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~  117 (183)
T d1yg6a1          86 ASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGG  117 (183)
T ss_dssp             ETHHHHHHHTSCTTCEEECTTCEEEECCCEEE
T ss_pred             HHHHHHHHHcCCCCceeeCCCceEEecccccc
Confidence            999999999998  799999998876554433

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.14  E-value=0.0032  Score=44.74  Aligned_cols=106  Identities=10%  Similarity=0.019  Sum_probs=69.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCC
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCR   98 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (145)
                      |..+-.|..-+.-+++....+.+..+.+.+.+.. +-.|.|.-.|+     +.+.+-......  ..........+ .-.
T Consensus        90 v~v~a~Dftv~gGS~g~~~~~K~~r~~e~A~~~~-lPlI~l~dsgG-----arm~e~~~~~~~--~~~~~~~~~~~-s~~  160 (258)
T d1xnya1          90 VAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTG-CPVVGINDSGG-----ARIQEGVASLGA--YGEIFRRNTHA-SGV  160 (258)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECCCS-----BCGGGTHHHHHH--HHHHHHHHHHT-TTT
T ss_pred             EEEEechhhhhcCccchhhHHHHHHHHHHHHHcC-CceEEEecCCC-----cccCcccccccc--hhHHHHHHHHH-cCC
Confidence            6666666666778899999999999999988765 45666665433     333331111100  01111112222 346


Q ss_pred             ccEEEeechhccHHhHHHHHhcCEEEEeC-CcEEec
Q 032207           99 KPIIGAISGFAVTAGFEIALACDVLVAAK-GAKFID  133 (145)
Q Consensus        99 kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~-~a~f~~  133 (145)
                      .|+|+++.|+|.||+......||++|+.+ .+.+.+
T Consensus       161 vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~  196 (258)
T d1xnya1         161 IPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFI  196 (258)
T ss_dssp             SCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEES
T ss_pred             CCEEEEEcCCcChhHHHHHHhccchhhcccceEEEe
Confidence            89999999999999999888889888775 566654

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00075  Score=48.31  Aligned_cols=107  Identities=15%  Similarity=0.097  Sum_probs=70.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCC
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCR   98 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (145)
                      |+.+-.|-.=..-+++....+.+..+.+.+.+.. +-.|.++.     |.|..+.+-.....  ...........+....
T Consensus        98 v~v~a~Dftv~gGS~g~~~~~Ki~~a~e~A~~~~-lPlI~~~~-----sgG~r~~e~~~sl~--~~~~~~~~~~~~~~~~  169 (263)
T d2f9yb1          98 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDN-CPLICFSA-----SGGARMQEALMSLM--QMAKTSAALAKMQERG  169 (263)
T ss_dssp             CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHHT-CCEEEEEE-----ESSBCGGGTHHHHH--HHHHHHHHHHHHHHTT
T ss_pred             EEEEeeeehhhccccccchhhHHhHHHHHHHHcC-CCeEEEec-----CCCcccccccchhh--cchhHHHHHHHHHhCC
Confidence            6666666655678899999999999999888654 34555553     33344433111100  0111222334455678


Q ss_pred             ccEEEeechhccHHhHH-HHHhcCEEEEeCCcEEec
Q 032207           99 KPIIGAISGFAVTAGFE-IALACDVLVAAKGAKFID  133 (145)
Q Consensus        99 kp~Ia~v~G~a~GgG~~-l~l~~D~~ia~~~a~f~~  133 (145)
                      .|+|+++.|+|.||+.. +++.+|++++.+.+.+.+
T Consensus       170 vP~I~v~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~  205 (263)
T d2f9yb1         170 LPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGF  205 (263)
T ss_dssp             CCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEES
T ss_pred             CceEEEecCCcchHHHhhhhhcCceEeeecceeeec
Confidence            89999999999999865 788888888888887765

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.73  E-value=0.0053  Score=43.63  Aligned_cols=106  Identities=10%  Similarity=0.014  Sum_probs=69.0

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCC
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCR   98 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (145)
                      |..+..+..-+.-+++....+.+..+.+.+.++. +-+|.+.-.     .|..+.+-..... . ....... .......
T Consensus        91 v~v~a~Dft~~gGS~g~~~g~K~~ra~e~A~~~~-lP~I~l~ds-----gGar~~eg~~~~~-~-~~~~~~~-~~~~~~~  161 (258)
T d2a7sa1          91 VCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTG-RPLIGINDG-----AGARIQEGVVSLG-L-YSRIFRN-NILASGV  161 (258)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECC-----CSBCGGGCTHHHH-H-HHHHHHH-HHHHTTT
T ss_pred             EEEecccceEeCCccchhhhhHHHHHHHHHHhcC-CceEEEecc-----CCccccccccccc-c-hhhHHHH-HHHHcCC
Confidence            6666666666778899999999999999998765 455555432     2333332110000 0 0111111 2233457


Q ss_pred             ccEEEeechhccHHhHHHHHhcCEEEEeC-CcEEec
Q 032207           99 KPIIGAISGFAVTAGFEIALACDVLVAAK-GAKFID  133 (145)
Q Consensus        99 kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~-~a~f~~  133 (145)
                      .|+|+++.|+|.||+......||++|+.+ .+.+.+
T Consensus       162 vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i~~  197 (258)
T d2a7sa1         162 IPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFI  197 (258)
T ss_dssp             SCEEEEECSCCBSGGGHHHHHSSEEEEEBTTBBCBS
T ss_pred             CCEEEEEecCcccHHHHHHHhccceEeecCceEEEc
Confidence            99999999999999999999999988764 466544

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.68  E-value=0.0062  Score=40.76  Aligned_cols=88  Identities=11%  Similarity=0.071  Sum_probs=62.6

Q ss_pred             CCHHHHHHHHHHHHhhcc---CCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           33 LTRSMMADMAQAFKSLDK---DESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        33 l~~~~~~~l~~~l~~~~~---~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      ++.++..++...|..++.   ++.+. +.|.+.|      +|+..            ...++..|...+.|+...+.|.|
T Consensus        22 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS~G------G~v~~------------gl~i~d~i~~~~~~v~t~~~G~a   82 (179)
T d2cbya1          22 VNDEIANRLCAQILLLAAEDASKDIS-LYINSPG------GSISA------------GMAIYDTMVLAPCDIATYAMGMA   82 (179)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEECC------BCHHH------------HHHHHHHHHHCSSCEEEEEEEEE
T ss_pred             ECHHHHHHHHHHHHHHhccCCCCeEE-EEeeCCC------CCHHH------------HHHHHHHHHhhccceeeehhhhh
Confidence            688888888887655543   23333 3445443      33322            13456778889999999999999


Q ss_pred             cHHhHHHHHhcC--EEEEeCCcEEeccceeee
Q 032207          110 VTAGFEIALACD--VLVAAKGAKFIDTHARLV  139 (145)
Q Consensus       110 ~GgG~~l~l~~D--~~ia~~~a~f~~pe~~~G  139 (145)
                      .+.|.-+.+++|  .|++.++++|-+-+...|
T Consensus        83 aS~a~~il~ag~k~~R~~~~~s~~miH~~~~~  114 (179)
T d2cbya1          83 ASMGEFLLAAGTKGKRYALPHARILMHQPLGG  114 (179)
T ss_dssp             ETHHHHHHHTSCTTCEEECTTCEEECCCC---
T ss_pred             hhHHHHHHHcCCCCceEECCchHhhcCCCchh
Confidence            999999999999  899999999976554433

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.65  E-value=0.0097  Score=42.00  Aligned_cols=105  Identities=16%  Similarity=0.117  Sum_probs=67.2

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCC
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCR   98 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (145)
                      |+.+..+..-..-+++...-+.+..+.+.+.+.. +-+|.+...     .|..+.+-...... .. ...... ....-.
T Consensus        88 v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~~-~P~I~~~ds-----gG~r~~e~~~~l~~-~~-~~~~~~-~~~s~~  158 (251)
T d1vrga1          88 VAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGINDS-----GGARIQEGVDALAG-YG-EIFLRN-TLASGV  158 (251)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEEE-----CSBCGGGTHHHHHH-HH-HHHHHH-HHHTTT
T ss_pred             EEEeeehhhhhhcccchHHHHHHHHHHHHHHHcC-CCEEEEEcC-----CCcccccccccccc-ch-HHHHHH-HHHCCC
Confidence            5666665555677889988899999998887664 345555442     33444331111110 01 111112 223457


Q ss_pred             ccEEEeechhccHHhHHHHHhcCEEEEeCC-cEEe
Q 032207           99 KPIIGAISGFAVTAGFEIALACDVLVAAKG-AKFI  132 (145)
Q Consensus        99 kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~-a~f~  132 (145)
                      .|+|+++.|+|.||+......||++|+.++ +.+.
T Consensus       159 iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i~  193 (251)
T d1vrga1         159 VPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMF  193 (251)
T ss_dssp             SCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCB
T ss_pred             CCEEEEEccCccccceehhhhCceEEEEccceeEE
Confidence            999999999999999999999999998754 5444

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.0016  Score=47.69  Aligned_cols=94  Identities=11%  Similarity=0.111  Sum_probs=68.6

Q ss_pred             CCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207           31 NSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV  110 (145)
Q Consensus        31 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~  110 (145)
                      -.++++-.+.-.+.++.+++-. +-+|-|--.++++. |.+-++      ........+.+..+..+++|+|+.|-|-+.
T Consensus       130 G~~~p~~~rKa~r~~~~a~~~~-~Pii~~vDtpG~~~-g~~~E~------~g~~~~~a~~~~~~~~~~vP~i~vv~g~g~  201 (316)
T d2f9ya1         130 GMPAPEGYRKALRLMQMAERFK-MPIITFIDTPGAYP-GVGAEE------RGQSEAIARNLREMSRLGVPVVCTVIGEGG  201 (316)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEESCSCC-SHHHHH------TTHHHHHHHHHHHHHTCSSCEEEEEEEEEE
T ss_pred             ccccHHHHHHHHHHHHHHHHcC-cceEEEEecCcccC-Cccccc------ccHHHHHHHHHHHHHhCCCceEEEEEhhhh
Confidence            4578889999888888888653 45554444333222 211111      122344567788899999999999999999


Q ss_pred             HHhHHHHHhcCEEEEeCCcEEe
Q 032207          111 TAGFEIALACDVLVAAKGAKFI  132 (145)
Q Consensus       111 GgG~~l~l~~D~~ia~~~a~f~  132 (145)
                      |||.--...+|.+.+-+++.++
T Consensus       202 ~gga~a~~~~d~v~m~~~a~~s  223 (316)
T d2f9ya1         202 SGGALAIGVGDKVNMLQYSTYS  223 (316)
T ss_dssp             HHHHHTTCCCSEEEECTTCEEE
T ss_pred             chhhhhhhhhhHHHHHhhhHHh
Confidence            9999888889999999999997

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.27  E-value=0.017  Score=38.90  Aligned_cols=89  Identities=8%  Similarity=0.080  Sum_probs=65.4

Q ss_pred             CCHHHHHHHHHHHHhhccC--CCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207           33 LTRSMMADMAQAFKSLDKD--ESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV  110 (145)
Q Consensus        33 l~~~~~~~l~~~l~~~~~~--~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~  110 (145)
                      +|.++..++...+..++..  +++. +.|.+.|      +|+..            ...++..|..++.|+...+.|.|.
T Consensus        27 Id~~~~~~~i~~l~~l~~~~~~~I~-l~INS~G------G~v~~------------g~ai~d~i~~~~~~v~tv~~G~aa   87 (190)
T d2f6ia1          27 INKKTADELISQLLYLDNINHNDIK-IYINSPG------GSINE------------GLAILDIFNYIKSDIQTISFGLVA   87 (190)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCCSCEE-EEEEECC------BCHHH------------HHHHHHHHHHSSSCEEEEEEEEEC
T ss_pred             eCHHHHHHHHHHHHHHhccCCCCeE-EEEeCch------hhhhH------------HHHHHHHHHhhCCceEEEEecccc
Confidence            6888888888888777643  3343 3344433      33322            234566778889999999999999


Q ss_pred             HHhHHHHHhcC--EEEEeCCcEEeccceeeee
Q 032207          111 TAGFEIALACD--VLVAAKGAKFIDTHARLVC  140 (145)
Q Consensus       111 GgG~~l~l~~D--~~ia~~~a~f~~pe~~~G~  140 (145)
                      +.|.-++++++  .|++.++++|-+-+...|+
T Consensus        88 S~a~~i~~aG~kg~R~~~pns~imiH~~s~~~  119 (190)
T d2f6ia1          88 SMASVILASGKKGKRKSLPNCRIMIHQPLGNA  119 (190)
T ss_dssp             HHHHHHHHTSCTTCEEECTTCEEESSCTTCSC
T ss_pred             chhHHHHHhCCCCccccCCCcEEEEccccccc
Confidence            99999999988  6999999999876665443

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=96.18  E-value=0.018  Score=38.99  Aligned_cols=88  Identities=13%  Similarity=0.134  Sum_probs=64.1

Q ss_pred             CCHHHHHHHHHHHHhhccC---CCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           33 LTRSMMADMAQAFKSLDKD---ESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        33 l~~~~~~~l~~~l~~~~~~---~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      ++.++..++...+..++..   .++. +.|.+.|+...+|                  ..++..|...+.|+...+.|.|
T Consensus        35 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS~GG~v~~g------------------~~i~d~i~~~~~~V~tv~~G~a   95 (193)
T d1tg6a1          35 IDDSVASLVIAQLLFLQSESNKKPIH-MYINSPGGVVTAG------------------LAIYDTMQYILNPICTWCVGQA   95 (193)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEECCBCHHHH------------------HHHHHHHHHSCSCEEEEEEEEE
T ss_pred             EchHHHHHHHHHHHHhcccCCCcEEE-EEeecCcccHHHH------------------HHHHHHHHhhcCceEEEEccch
Confidence            6788888888776666532   3344 3445555333222                  3456788889999999999999


Q ss_pred             cHHhHHHHHhcC--EEEEeCCcEEeccceeee
Q 032207          110 VTAGFEIALACD--VLVAAKGAKFIDTHARLV  139 (145)
Q Consensus       110 ~GgG~~l~l~~D--~~ia~~~a~f~~pe~~~G  139 (145)
                      .+.|.-+.+++|  .|++.++++|-+-+...|
T Consensus        96 aS~a~~il~aG~~g~R~~~pns~~miHq~~~~  127 (193)
T d1tg6a1          96 ASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGG  127 (193)
T ss_dssp             ETHHHHHHHTSCTTCEEECTTCEEEECCCCCC
T ss_pred             HHHHHHHhhcCccCccccCcccHHHhcCCccC
Confidence            999999999999  599999999876555443

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.04  E-value=0.037  Score=39.20  Aligned_cols=107  Identities=15%  Similarity=0.158  Sum_probs=74.9

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCC
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCR   98 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (145)
                      |+.|--|..-...+++.+-.+...+.++.+... ++-.|.|.-. ..|..|.+-+.      ........+++..+..+.
T Consensus        69 vgvian~~~~~~G~~~~~~a~Kaa~fi~lc~~~-~iPli~l~Dt-pGf~~G~~~E~------~g~~~~ga~~~~a~a~~~  140 (264)
T d1vrga2          69 VGIVANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT-PGYLPGVAQEH------GGIIRHGAKLLYAYSEAT  140 (264)
T ss_dssp             EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH------TTHHHHHHHHHHHHHHCC
T ss_pred             EEEEeccccccccchhhhhHHHHHHHHHHHHHh-CCceEEEeec-ccccccHHHHH------HhHHHHHHHHHHHHhcCC
Confidence            444443333234679999999999999998865 3566666553 33555533322      223445577889999999


Q ss_pred             ccEEEeechhccHHhHHHH----HhcCEEEEeCCcEEec
Q 032207           99 KPIIGAISGFAVTAGFEIA----LACDVLVAAKGAKFID  133 (145)
Q Consensus        99 kp~Ia~v~G~a~GgG~~l~----l~~D~~ia~~~a~f~~  133 (145)
                      .|.|+.+=|.+.|+|..-.    +.+|++++-++++++.
T Consensus       141 vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~v  179 (264)
T d1vrga2         141 VPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAV  179 (264)
T ss_dssp             SCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES
T ss_pred             CCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEe
Confidence            9999999999999887332    2599999999988875

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.94  E-value=0.025  Score=38.11  Aligned_cols=88  Identities=15%  Similarity=0.194  Sum_probs=63.4

Q ss_pred             CCHHHHHHHHHHHHhhccC---CCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           33 LTRSMMADMAQAFKSLDKD---ESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        33 l~~~~~~~l~~~l~~~~~~---~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      ++.++...+...|..++.+   ..+. +.|.+.|+...+|                  ..++..|..++.|+...+.|.|
T Consensus        33 I~~~~~~~~~~~l~~l~~~~~~~~I~-l~InS~GG~v~~g------------------lai~d~i~~~~~~v~t~~~G~a   93 (192)
T d1y7oa1          33 VEDNMANSVIAQLLFLDAQDSTKDIY-LYVNTPGGSVSAG------------------LAIVDTMNFIKADVQTIVMGMA   93 (192)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCTTSCEE-EEEEECCBCHHHH------------------HHHHHHHHHSSSCEEEEEEEEE
T ss_pred             EchHHHHHHHHHHHHhhhhcccCcee-eeecCCCCCHHHH------------------HHHHHHHHhcCcceEEEecccc
Confidence            6888888888877766532   2333 4456655333322                  3456788889999999999999


Q ss_pred             cHHhHHHHHh--cCEEEEeCCcEEeccceeee
Q 032207          110 VTAGFEIALA--CDVLVAAKGAKFIDTHARLV  139 (145)
Q Consensus       110 ~GgG~~l~l~--~D~~ia~~~a~f~~pe~~~G  139 (145)
                      .+.|.-++++  +|.|++.++++|-+-+...|
T Consensus        94 aS~as~il~aG~~g~R~~~pns~~miHq~~~~  125 (192)
T d1y7oa1          94 ASMGTVIASSGAKGKRFMLPNAEYMIHQPMGG  125 (192)
T ss_dssp             ETHHHHHHTTSCTTCEEECTTCEEECCCCC--
T ss_pred             CCccceeeeecCCCccccchHHHHHhhccccc
Confidence            9999998886  57999999999977665543

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.90  E-value=0.0029  Score=46.61  Aligned_cols=37  Identities=14%  Similarity=0.033  Sum_probs=33.8

Q ss_pred             CCccEEEeechhccHHhHHHHHhcCEEEEeCCcEEec
Q 032207           97 CRKPIIGAISGFAVTAGFEIALACDVLVAAKGAKFID  133 (145)
Q Consensus        97 ~~kp~Ia~v~G~a~GgG~~l~l~~D~~ia~~~a~f~~  133 (145)
                      -..|+|+++.|+|+|+|.-++..||++|+.+++.+.+
T Consensus       239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~l  275 (333)
T d1uyra1         239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIIL  275 (333)
T ss_dssp             HHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEES
T ss_pred             CCCCEEEEEeCCccccceeecccccEEEEeCCceEEe
Confidence            4699999999999999999999999999999876654

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.84  E-value=0.027  Score=40.06  Aligned_cols=106  Identities=18%  Similarity=0.236  Sum_probs=74.5

Q ss_pred             EEEEEEcCCC-CCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcC
Q 032207           19 IAYVTINRPK-SLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERC   97 (145)
Q Consensus        19 v~~i~l~~~~-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~   97 (145)
                      |..|- |++. ....++.+-.+...+.++.+++. ++-+|.|.-.+ .|..|.+-+.      ........+++..+..+
T Consensus        72 vgvia-n~~~~~~G~~~~~~~~Ka~rfi~lc~~~-~iPlv~l~dtp-Gf~~G~~~E~------~g~~~~ga~~~~a~a~~  142 (271)
T d2a7sa2          72 VGIVA-NQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDVP-GFLPGTDQEY------NGIIRRGAKLLYAYGEA  142 (271)
T ss_dssp             EEEEE-ECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-CBCCCHHHHH------HCHHHHHHHHHHHHHHC
T ss_pred             EEEEe-ccccccCCCcCHHHHHHHHHHHHHHHHh-CCceEEeechh-hhhhhccHHH------hhHHHHHHHHHHHHHhC
Confidence            44444 4443 33689999999999999998754 46677776542 3444433222      12234456788899999


Q ss_pred             CccEEEeechhccHHhHHHH----HhcCEEEEeCCcEEec
Q 032207           98 RKPIIGAISGFAVTAGFEIA----LACDVLVAAKGAKFID  133 (145)
Q Consensus        98 ~kp~Ia~v~G~a~GgG~~l~----l~~D~~ia~~~a~f~~  133 (145)
                      ..|.|+.+-|.+.|+|....    +.+|+++|.++++++.
T Consensus       143 ~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igv  182 (271)
T d2a7sa2         143 TVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV  182 (271)
T ss_dssp             CSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES
T ss_pred             CCCeEEEEeCCccchhhhhhcccccccceEEEecceeEee
Confidence            99999999999999875432    2479999999998875

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.59  E-value=0.08  Score=37.36  Aligned_cols=108  Identities=16%  Similarity=0.168  Sum_probs=75.8

Q ss_pred             EEEEEEcCCCCCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCC
Q 032207           19 IAYVTINRPKSLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCR   98 (145)
Q Consensus        19 v~~i~l~~~~~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (145)
                      |+.|-=|......+++.+-.+...+.++.++... +-+|.|.-.+ .|..|.+-+.      ........+++..+.++.
T Consensus        67 vgvia~~~~~~~G~~~~~~a~Ka~~fi~lc~~~~-iPli~l~d~p-Gf~~G~~~E~------~g~~~~ga~~~~a~a~~~  138 (263)
T d1xnya2          67 VGIVANQPMQFAGCLDITASEKAARFVRTCDAFN-VPVLTFVDVP-GFLPGVDQEH------DGIIRRGAKLIFAYAEAT  138 (263)
T ss_dssp             EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHTT-CCEEEEEEEC-CBCCCHHHHH------TTHHHHHHHHHHHHHHCC
T ss_pred             EEEEecccceecCCcchhhHHHHHHHHHHHHHhC-CceEEeeccc-ccccchhHHH------HhHHHHHHHHHHHHHccC
Confidence            5555433333456899999999999999998653 5666665542 2555533222      222345567888999999


Q ss_pred             ccEEEeechhccHHhHHHHH----hcCEEEEeCCcEEecc
Q 032207           99 KPIIGAISGFAVTAGFEIAL----ACDVLVAAKGAKFIDT  134 (145)
Q Consensus        99 kp~Ia~v~G~a~GgG~~l~l----~~D~~ia~~~a~f~~p  134 (145)
                      .|.|+.+-|.+.|+|.....    ..|+++|.+++.++.-
T Consensus       139 vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gvm  178 (263)
T d1xnya2         139 VPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAVM  178 (263)
T ss_dssp             SCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESS
T ss_pred             CCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhcc
Confidence            99999999999998765432    4699999999988753

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=94.65  E-value=0.098  Score=36.91  Aligned_cols=106  Identities=17%  Similarity=0.177  Sum_probs=74.9

Q ss_pred             EEEEEEcCCC-CCCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcC
Q 032207           19 IAYVTINRPK-SLNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERC   97 (145)
Q Consensus        19 v~~i~l~~~~-~~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~   97 (145)
                      |.+|- |+|. ...+++.+-.+...+.++.+++. ++-+|.|.-. ..|..|-+-+.      ........+++..+.++
T Consensus        69 vgvia-n~~~~~~G~~~~~~a~Kaarfi~lc~~~-~iPlv~l~D~-pGf~~G~~~E~------~g~i~~ga~~~~a~a~~  139 (264)
T d1on3a2          69 VGIVA-NQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDV-PGFLPGVQQEY------GGIIRHGAKMLYAYSEA  139 (264)
T ss_dssp             EEEEE-ECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH------TTHHHHHHHHHHHHHHC
T ss_pred             EEEEe-ccchhcccccChHHHHHHHHHHHHHHhc-CCceEEEecc-ccccccHHHHH------HHHHHHHHHHHHHHHcC
Confidence            44444 4443 46789999999999999988864 4667766654 33555543222      22344557788899999


Q ss_pred             CccEEEeechhccHHhHHHH----HhcCEEEEeCCcEEec
Q 032207           98 RKPIIGAISGFAVTAGFEIA----LACDVLVAAKGAKFID  133 (145)
Q Consensus        98 ~kp~Ia~v~G~a~GgG~~l~----l~~D~~ia~~~a~f~~  133 (145)
                      .+|.|+.+-|.++|+|..-.    ...|+++|-+++.++.
T Consensus       140 ~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~v  179 (264)
T d1on3a2         140 TVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAV  179 (264)
T ss_dssp             CSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEES
T ss_pred             CCCEEEEEeccccCccccccccccCChhheeeHHhhHhhh
Confidence            99999999999999875433    2478999998888864

>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.69  E-value=0.39  Score=31.06  Aligned_cols=52  Identities=21%  Similarity=0.218  Sum_probs=34.9

Q ss_pred             HHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhcc
Q 032207           41 MAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAV  110 (145)
Q Consensus        41 l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~  110 (145)
                      +.+.++.+.+||++|+|++..++-.     |            .+.+.+..++.. ..||+|+..-|..-
T Consensus        61 ~~d~l~~l~~D~~t~~i~l~~E~~~-----~------------~~~f~~~~r~~~-~~Kpvv~~k~G~s~  112 (161)
T d2csua2          61 FAELMEYLADTEEDKAIALYIEGVR-----N------------GKKFMEVAKRVT-KKKPIIALKAGKSE  112 (161)
T ss_dssp             HHHHHHHHTTCSSCCEEEEEESCCS-----C------------HHHHHHHHHHHH-HHSCEEEEECC---
T ss_pred             HHHHHHHHhcCCCCcEEEEEecCCc-----C------------HHHHHHHHHHHh-ccCCeeEEEeeccc
Confidence            6688889999999999999987521     2            123344455554 35899998877753

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.42  E-value=2.5  Score=31.21  Aligned_cols=97  Identities=19%  Similarity=0.172  Sum_probs=62.2

Q ss_pred             CCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEee--chh
Q 032207           31 NSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAI--SGF  108 (145)
Q Consensus        31 N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v--~G~  108 (145)
                      -.+.++-...-.+.+..+.+..++-+|+|.-. +.|+.|-+-..      ........+++..+.++.+|+|..|  .|.
T Consensus       108 gv~~p~sA~K~A~~i~d~cd~~~lPLi~l~D~-pGF~~G~~~E~------~gilr~GA~iv~A~~~~~vP~i~vI~~~g~  180 (404)
T d1uyra2         108 QVWHPNSAFKTAQAINDFNNGEQLPMMILANW-RGFSGGQRDMF------NEVLKYGSFIVDALVDYKQPIIIYIPPTGE  180 (404)
T ss_dssp             TCBCHHHHHHHHHHHHHHHTTSCCCEEECCCC-CCBCC------------CTHHHHHHHHHHHHHTCCSCEEEEECTTCE
T ss_pred             CccCchHHHHHHHHHHHhhhccccceEEeecC-CcccCcHHHHH------HHHHHHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            35677788888888876665555666666544 55777754322      2223445677889999999999999  677


Q ss_pred             ccHHhHHHHH---h-cCE-EEEeCCcEEecc
Q 032207          109 AVTAGFEIAL---A-CDV-LVAAKGAKFIDT  134 (145)
Q Consensus       109 a~GgG~~l~l---~-~D~-~ia~~~a~f~~p  134 (145)
                      +.||.+.+.-   . .++ ++|-++++++.-
T Consensus       181 ~~GGa~vv~~~~~~~~~~~~yAwP~a~~gVm  211 (404)
T d1uyra2         181 LRGGSWVVVDPTINADQMEMYADVNARAGVL  211 (404)
T ss_dssp             EEHHHHHTTCGGGGTTTEEEEEETTCEEESS
T ss_pred             cchhhhhcccCccCCccceEEECCccccccC
Confidence            8787665442   2 233 577888887653

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=84.46  E-value=3.6  Score=28.99  Aligned_cols=96  Identities=8%  Similarity=0.086  Sum_probs=64.4

Q ss_pred             CCCCCHHHHHHHHHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhc
Q 032207           30 LNSLTRSMMADMAQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFA  109 (145)
Q Consensus        30 ~N~l~~~~~~~l~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a  109 (145)
                      .-+++.+-.+...+.++.+++.. +-+|.|.-. ..|-.|.+-+.      ........+++..+.++..|.|+.+=|.+
T Consensus        96 ~G~l~~~~a~K~~rfi~lc~~~~-iPlv~l~D~-pGf~~g~~~E~------~g~~r~ga~~~~a~~~~~VP~isvi~r~~  167 (299)
T d1pixa3          96 GGKLYRQGLVKMNEFVTLCARDR-LPIVWIQDT-TGIDVGNDAEK------AELLGLGQSLIYSIQTSHIPQFEITLRKG  167 (299)
T ss_dssp             TTEECHHHHHHHHHHHHHHHHTT-CCEEEEECC-CEECCSHHHHH------TTHHHHHHHHHHHHHTCCCCEEEEECSEE
T ss_pred             CCccCHHHHHHHHHHHHHHHHcC-CeEEEEEeC-CCcccchHHHh------hhHHHHHHHHHHHHHhhcceeEEEEeccc
Confidence            45688999999999999888653 566666543 22555533221      22334456778889999999999999999


Q ss_pred             cHHhHHHHH----hcCEE--EEeCCcEEec
Q 032207          110 VTAGFEIAL----ACDVL--VAAKGAKFID  133 (145)
Q Consensus       110 ~GgG~~l~l----~~D~~--ia~~~a~f~~  133 (145)
                      .|+|.--..    ..|++  ++..+++++.
T Consensus       168 ~G~a~~am~g~~~~~~~~~~~awP~aeigv  197 (299)
T d1pixa3         168 TAAAHYVLGGPQGNDTNAFSIGTAATEIAV  197 (299)
T ss_dssp             ETTHHHHTTCTTCTTTEEEEEECTTCEEES
T ss_pred             ccccccccccCccCcccceecCCCcccccc
Confidence            998854332    23543  4566666653

>d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=82.66  E-value=1.5  Score=28.17  Aligned_cols=57  Identities=18%  Similarity=0.334  Sum_probs=30.0

Q ss_pred             HHHHHhhccCCCeeEEEEEcCCCcccccCCchhhhhhcccCcccHHHHHHHHHhcCCccEEEeechhccHHhHHH
Q 032207           42 AQAFKSLDKDESVLVIILSGSGRAFCSGVDLTSAEDVFKGDVKDVETDTVAQMERCRKPIIGAISGFAVTAGFEI  116 (145)
Q Consensus        42 ~~~l~~~~~~~~v~~vvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~GgG~~l  116 (145)
                      .+.++.+.+||++++|++..++..     |            .+.+.+..++. ...||+|+.+.|.....+-.+
T Consensus        67 ~d~l~~~~~D~~t~vI~l~~E~~~-----~------------~~~f~~~~~~~-~~~kpvvv~~~g~~a~~~~~~  123 (167)
T d1oi7a2          67 KDLLPLFNEDPETEAVVLIGEIGG-----S------------DEEEAAAWVKD-HMKKPVVGFIGGRSAPKGKRM  123 (167)
T ss_dssp             HHHHHHHHTCTTCCEEEEEECSSS-----S------------HHHHHHHHHHH-HCCSCEEEEESCC--------
T ss_pred             HHHHHHHhhccccceeeEeeeccc-----h------------HHHHHHHHHHH-hcCCceEEEeccccccccccc
Confidence            356667777888888888876410     1            22233344443 467777777777655554443