Citrus Sinensis ID: 032228

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----

MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAAGIDDDDEAGPDNYIEFEDEDIDRI

cccccccccccccccccccccHHHHcccccccEEEEEEEEEccccEEEEEEccccEEEEEEcccccEEEEEEcccEEEEEccccccccEEEEEEccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccc

ccccccccccccccccccccccEEEEcccccccEEEEEEHHcccccEEEEEEcccEEEEEEccccEEEEEEEcccEEEEEccccccccccEEEEEcHHHHHHHHHcccccccEEEccccccccccccccccccccccccHHHccc

mpknkgkggknrkrgkneaddEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYgelpettrlnegiaagiddddeagpdnyiefededidri

mpknkgkggknrkrgkneaddekrelifkedgqEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAagiddddeagpdnyiefededidri

MPknkgkggknrkrgknEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNegiaagiddddeagPDNYIEFEDEDIDRI

**************************IFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGI**************************

****************************KEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEG**********AGPDNYIEFEDEDIDR*

*********************EKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAAGIDDDDEAGPDNYIEFEDEDIDRI

********************DEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEG***************************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAAGIDDDDEAGPDNYIEFEDEDIDRI

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		145	2.2.26 [Sep-21-2011]
P56331		145	Eukaryotic translation in	N/A	no	1.0	1.0	0.868	3e-67
P47815		144	Eukaryotic translation in	N/A	no	0.986	0.993	0.821	3e-63
Q5RA42		144	Eukaryotic translation in	yes	no	0.882	0.888	0.773	6e-52
Q8BMJ3		144	Eukaryotic translation in	yes	no	0.882	0.888	0.773	6e-52
P47813		144	Eukaryotic translation in	yes	no	0.882	0.888	0.773	6e-52
Q6GVM3		144	Eukaryotic translation in	yes	no	0.889	0.895	0.759	1e-51
O14602		144	Eukaryotic translation in	yes	no	0.882	0.888	0.765	1e-51
Q6VV72		144	Eukaryotic translation in	yes	no	0.882	0.888	0.757	2e-51
Q60872		144	Eukaryotic translation in	yes	no	0.882	0.888	0.757	2e-51
P47814		144	Eukaryotic translation in	yes	no	0.882	0.888	0.75	8e-50

>sp\|P56331\|IF1A_ONOVI Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2	Back alignment and function desciption

 Score =  253 bits (645), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 126/145 (86%), Positives = 134/145 (92%)

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCH 60
           MPKNKGKGGKNRKRGKNEADD+KREL+FKEDGQEYAQVLRMLGNGRCEAMCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIA 120
           IRGKMHKKVWI AGDIILVGLRDYQDDKADVILK MPDEARLLKAYGELP+ TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIG 120

Query: 121 AGIDDDDEAGPDNYIEFEDEDIDRI 145
           AG  D++    ++YIEFEDEDID+I
Sbjct: 121 AGGLDEEMDTANDYIEFEDEDIDKI 145

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.
Onobrychis viciifolia (taxid: 3882)

>sp\|P47815\|IF1A_WHEAT Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2	Back alignment and function description

>sp\|Q5RA42\|IF1AX_PONAB Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3	Back alignment and function description

>sp\|Q8BMJ3\|IF1AX_MOUSE Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ax PE=2 SV=3	Back alignment and function description

>sp\|P47813\|IF1AX_HUMAN Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2	Back alignment and function description

>sp\|Q6GVM3\|IF1AY_PANTR Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Pan troglodytes GN=EIF1AY PE=2 SV=3	Back alignment and function description

>sp\|O14602\|IF1AY_HUMAN Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Homo sapiens GN=EIF1AY PE=1 SV=4	Back alignment and function description

>sp\|Q6VV72\|IF1A_RAT Eukaryotic translation initiation factor 1A OS=Rattus norvegicus GN=Eif1a PE=2 SV=3	Back alignment and function description

>sp\|Q60872\|IF1A_MOUSE Eukaryotic translation initiation factor 1A OS=Mus musculus GN=Eif1a PE=2 SV=3	Back alignment and function description

>sp\|P47814\|IF1A_RABIT Eukaryotic translation initiation factor 1A OS=Oryctolagus cuniculus GN=EIF1A PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		145
449458572		145	PREDICTED: eukaryotic translation initia	1.0	1.0	0.924	2e-71
356506032		145	PREDICTED: eukaryotic translation initia	1.0	1.0	0.903	3e-70
225454422		145	PREDICTED: eukaryotic translation initia	1.0	1.0	0.910	4e-70
388503528		145	unknown [Lotus japonicus]	1.0	1.0	0.903	5e-70
116779866		145	unknown [Picea sitchensis] gi\|116780890\|	1.0	1.0	0.896	8e-70
356560650		145	PREDICTED: eukaryotic translation initia	1.0	1.0	0.889	7e-69
356520336		145	PREDICTED: eukaryotic translation initia	1.0	1.0	0.882	1e-68
81076307		144	putative translation initiation factor e	0.993	1.0	0.896	2e-68
297805112		145	hypothetical protein ARALYDRAFT_915692 [	1.0	1.0	0.889	1e-67
317159553		145	eukaryotic translation initiation factor	1.0	1.0	0.910	2e-67

>gi\|449458572\|ref\|XP_004147021.1\| PREDICTED: eukaryotic translation initiation factor 1A-like [Cucumis sativus] gi\|449529628\|ref\|XP_004171800.1\| PREDICTED: eukaryotic translation initiation factor 1A-like [Cucumis sativus]	Back alignment and taxonomy information

 Score =  273 bits (697), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 134/145 (92%), Positives = 139/145 (95%)

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIA 120
           IRGKMHKKVWI AGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE+TRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 AGIDDDDEAGPDNYIEFEDEDIDRI 145
            GIDD+D+   DNYIEFEDEDID+I
Sbjct: 121 GGIDDEDDGAGDNYIEFEDEDIDKI 145

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356506032\|ref\|XP_003521792.1\| PREDICTED: eukaryotic translation initiation factor 1A-like [Glycine max] gi\|356573185\|ref\|XP_003554744.1\| PREDICTED: eukaryotic translation initiation factor 1A-like [Glycine max]	Back alignment and taxonomy information

>gi\|225454422\|ref\|XP_002279938.1\| PREDICTED: eukaryotic translation initiation factor 1A-like [Vitis vinifera] gi\|225459517\|ref\|XP_002285844.1\| PREDICTED: eukaryotic translation initiation factor 1A [Vitis vinifera] gi\|147807310\|emb\|CAN73005.1\| hypothetical protein VITISV_021007 [Vitis vinifera] gi\|147821636\|emb\|CAN70425.1\| hypothetical protein VITISV_033730 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|388503528\|gb\|AFK39830.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

>gi\|116779866\|gb\|ABK21455.1\| unknown [Picea sitchensis] gi\|116780890\|gb\|ABK21865.1\| unknown [Picea sitchensis] gi\|116785276\|gb\|ABK23660.1\| unknown [Picea sitchensis] gi\|116789213\|gb\|ABK25161.1\| unknown [Picea sitchensis] gi\|148908808\|gb\|ABR17510.1\| unknown [Picea sitchensis] gi\|148910636\|gb\|ABR18388.1\| unknown [Picea sitchensis] gi\|224284556\|gb\|ACN40011.1\| unknown [Picea sitchensis]	Back alignment and taxonomy information

>gi\|356560650\|ref\|XP_003548603.1\| PREDICTED: eukaryotic translation initiation factor 1A-like [Glycine max]	Back alignment and taxonomy information

>gi\|356520336\|ref\|XP_003528819.1\| PREDICTED: eukaryotic translation initiation factor 1A-like [Glycine max]	Back alignment and taxonomy information

>gi\|81076307\|gb\|ABB55392.1\| putative translation initiation factor eIF-1A-like [Solanum tuberosum]	Back alignment and taxonomy information

>gi\|297805112\|ref\|XP_002870440.1\| hypothetical protein ARALYDRAFT_915692 [Arabidopsis lyrata subsp. lyrata] gi\|297316276\|gb\|EFH46699.1\| hypothetical protein ARALYDRAFT_915692 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|317159553\|gb\|ADV04051.1\| eukaryotic translation initiation factor 1Aa [Hevea brasiliensis] gi\|317159555\|gb\|ADV04052.1\| eukaryotic translation initiation factor 1Ab [Hevea brasiliensis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		145
TAIR\|locus:2058389		145	AT2G04520 [Arabidopsis thalian	0.882	0.882	0.828	1.9e-53
UNIPROTKB\|F1SQN5		144	EIF1AX "Uncharacterized protei	0.875	0.881	0.656	6.8e-40
UNIPROTKB\|Q32LC3		144	EIF1AX "Uncharacterized protei	0.875	0.881	0.664	8.7e-40
UNIPROTKB\|J9NYQ8		144	EIF1AX "Uncharacterized protei	0.875	0.881	0.664	8.7e-40
UNIPROTKB\|P47813		144	EIF1AX "Eukaryotic translation	0.875	0.881	0.664	8.7e-40
UNIPROTKB\|I3LAQ2		144	EIF1AX "Uncharacterized protei	0.875	0.881	0.664	8.7e-40
MGI\|MGI:1913485		144	Eif1ax "eukaryotic translation	0.875	0.881	0.664	8.7e-40
RGD\|1560198		144	Eif1ax "eukaryotic translation	0.875	0.881	0.664	8.7e-40
ZFIN\|ZDB-GENE-030131-1319		150	eif1axb "eukaryotic translatio	0.875	0.846	0.648	1.4e-39
UNIPROTKB\|O14602		144	EIF1AY "Eukaryotic translation	0.875	0.881	0.656	1.8e-39

TAIR\|locus:2058389 AT2G04520 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
 Identities = 106/128 (82%), Positives = 109/128 (85%)

Query:    18 EADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDII 77
             EADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDG KRLCHIRGKMHKKVWI AGDI+
Sbjct:    18 EADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIV 77

Query:    78 LVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNXXXXXXXXXXXXXXPDNYIEF 137
             LVGLRDYQDDKADVILKYM DEARLLKAYGELPE TRLN               D+Y+EF
Sbjct:    78 LVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLEDDDDNNDDDYVEF 137

Query:   138 EDEDIDRI 145
             EDEDIDRI
Sbjct:   138 EDEDIDRI 145

GO:0003723 "RNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB\|F1SQN5 EIF1AX "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q32LC3 EIF1AX "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|J9NYQ8 EIF1AX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|P47813 EIF1AX "Eukaryotic translation initiation factor 1A, X-chromosomal" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|I3LAQ2 EIF1AX "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:1913485 Eif1ax "eukaryotic translation initiation factor 1A, X-linked" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1560198 Eif1ax "eukaryotic translation initiation factor 1A, X-linked" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-1319 eif1axb "eukaryotic translation initiation factor 1A, X-linked, b" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|O14602 EIF1AY "Eukaryotic translation initiation factor 1A, Y-chromosomal" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6GVM3	IF1AY_PANTR	No assigned EC number	0.7596	0.8896	0.8958	yes	no
Q8BMJ3	IF1AX_MOUSE	No assigned EC number	0.7734	0.8827	0.8888	yes	no
P47813	IF1AX_HUMAN	No assigned EC number	0.7734	0.8827	0.8888	yes	no
P47814	IF1A_RABIT	No assigned EC number	0.75	0.8827	0.8888	yes	no
P47815	IF1A_WHEAT	No assigned EC number	0.8219	0.9862	0.9930	N/A	no
Q5RA42	IF1AX_PONAB	No assigned EC number	0.7734	0.8827	0.8888	yes	no
P55877	IF1A_SCHPO	No assigned EC number	0.6640	0.8827	0.9275	yes	no
P56331	IF1A_ONOVI	No assigned EC number	0.8689	1.0	1.0	N/A	no
Q54YJ6	IF1A_DICDI	No assigned EC number	0.6758	0.9724	1.0	yes	no
P38912	IF1A_YEAST	No assigned EC number	0.6106	0.7793	0.7385	yes	no
Q60872	IF1A_MOUSE	No assigned EC number	0.7578	0.8827	0.8888	yes	no
O14602	IF1AY_HUMAN	No assigned EC number	0.7656	0.8827	0.8888	yes	no
Q6VV72	IF1A_RAT	No assigned EC number	0.7578	0.8827	0.8888	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		145
PLN00208		145	PLN00208, PLN00208, translation initiation factor	1e-84
PTZ00329		155	PTZ00329, PTZ00329, eukaryotic translation initiat	5e-69
cd05793		77	cd05793, S1_IF1A, S1_IF1A: Translation initiation	1e-41
smart00652		83	smart00652, eIF1a, eukaryotic translation initiati	3e-40
TIGR00523		99	TIGR00523, eIF-1A, eukaryotic/archaeal initiation	5e-32
cd04456		78	cd04456, S1_IF1A_like, S1_IF1A_like: Translation i	6e-30
pfam01176		65	pfam01176, eIF-1a, Translation initiation factor 1	6e-27
PRK04012		100	PRK04012, PRK04012, translation initiation factor	3e-23
COG0361		75	COG0361, InfA, Translation initiation factor 1 (IF	4e-21

>gnl\|CDD\|177798 PLN00208, PLN00208, translation initiation factor (eIF); Provisional	Back alignment and domain information

 Score =  244 bits (624), Expect = 1e-84
 Identities = 128/145 (88%), Positives = 136/145 (93%)

Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEA+CIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEALCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIA 120
           IRGKM KKVWI AGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE TRLNEGIA
Sbjct: 61  IRGKMRKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIA 120

Query: 121 AGIDDDDEAGPDNYIEFEDEDIDRI 145
             +D++++   D+YIEFEDEDID+I
Sbjct: 121 GDLDEEEDGEGDDYIEFEDEDIDKI 145

Length = 145

>gnl\|CDD\|185558 PTZ00329, PTZ00329, eukaryotic translation initiation factor 1A; Provisional	Back alignment and domain information

>gnl\|CDD\|240219 cd05793, S1_IF1A, S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|128900 smart00652, eIF1a, eukaryotic translation initiation factor 1A	Back alignment and domain information

>gnl\|CDD\|129614 TIGR00523, eIF-1A, eukaryotic/archaeal initiation factor 1A	Back alignment and domain information

>gnl\|CDD\|239903 cd04456, S1_IF1A_like, S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain	Back alignment and domain information

>gnl\|CDD\|216345 pfam01176, eIF-1a, Translation initiation factor 1A / IF-1	Back alignment and domain information

>gnl\|CDD\|179708 PRK04012, PRK04012, translation initiation factor IF-1A; Provisional	Back alignment and domain information

>gnl\|CDD\|223438 COG0361, InfA, Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		145
PLN00208		145	translation initiation factor (eIF); Provisional	100.0
PTZ00329		155	eukaryotic translation initiation factor 1A; Provi	100.0
KOG3403		145	consensus Translation initiation factor 1A (eIF-1A	100.0
TIGR00523		99	eIF-1A eukaryotic/archaeal initiation factor 1A. R	100.0
PRK04012		100	translation initiation factor IF-1A; Provisional	100.0
smart00652		83	eIF1a eukaryotic translation initiation factor 1A.	100.0
cd04456		78	S1_IF1A_like S1_IF1A_like: Translation initiation	100.0
cd05793		77	S1_IF1A S1_IF1A: Translation initiation factor IF1	100.0
cd05792		78	S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translat	100.0
COG0361		75	InfA Translation initiation factor 1 (IF-1) [Trans	99.96
PF01176		65	eIF-1a: Translation initiation factor 1A / IF-1; I	99.94
TIGR00008		68	infA translation initiation factor IF-1. This fami	99.92
PRK12442		87	translation initiation factor IF-1; Reviewed	99.91
KOG2925		167	consensus Predicted translation initiation factor	99.91
CHL00010		78	infA translation initiation factor 1	99.78
PRK00276		72	infA translation initiation factor IF-1; Validated	99.76
cd04451		64	S1_IF1 S1_IF1: Translation Initiation Factor IF1,	99.53
cd04466		68	S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (	98.26
PRK00098		298	GTPase RsgA; Reviewed	97.1
PRK12289		352	GTPase RsgA; Reviewed	97.05
PRK12288		347	GTPase RsgA; Reviewed	96.67
cd01854		287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	96.55
PRK01889		356	GTPase RsgA; Reviewed	95.2
cd00164		65	S1_like S1_like: Ribosomal protein S1-like RNA-bin	94.69
cd05685		68	S1_Tex S1_Tex: The C-terminal S1 domain of a trans	91.17
TIGR00638		69	Mop molybdenum-pterin binding domain. This model d	89.29
PF03459		64	TOBE: TOBE domain; InterPro: IPR005116 The TOBE do	88.74
cd05789		86	S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain.	87.88
PHA02945		88	interferon resistance protein; Provisional	87.15
COG1162		301	Predicted GTPases [General function prediction onl	85.47
cd04454		82	S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-	84.7
PF02736		42	Myosin_N: Myosin N-terminal SH3-like domain; Inter	82.81
COG1093		269	SUI2 Translation initiation factor 2, alpha subuni	81.49
PF11948		131	DUF3465: Protein of unknown function (DUF3465); In	81.21
PF15057		124	DUF4537: Domain of unknown function (DUF4537)	80.32

>PLN00208 translation initiation factor (eIF); Provisional	Back alignment and domain information

Probab=100.00  E-value=7.8e-54  Score=330.39  Aligned_cols=145  Identities=88%  Similarity=1.419  Sum_probs=133.9

Q ss_pred             CCCCCCCCCcccccCCCcccccceeeccCCCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEE
Q 032228            1 MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVG   80 (145)
Q Consensus         1 mp~~~~~g~kn~rr~~~~~~~~~~el~~p~e~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe   80 (145)
                      ||+||+|||||+||+|++++...++|++|+++|+||+|+++|||++|+|+|+||+++||||||||||+|||++||+|+|+
T Consensus         1 m~k~k~kggk~~~~~k~~~~~~~~el~~p~egq~~g~V~~~lGn~~~~V~c~dG~~rLa~IpGKmRKrIWI~~GD~VlVe   80 (145)
T PLN00208          1 MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEALCIDGTKRLCHIRGKMRKKVWIAAGDIILVG   80 (145)
T ss_pred             CCCCCCCCccccccccccCccceeecccCCCCcEEEEEEEEcCCCEEEEEECCCCEEEEEEeccceeeEEecCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCceEEEEEcChhHHHHHHHcCCCCcccccccccccCCCCCCCCCCCCCccccCccccCC
Q 032228           81 LRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAAGIDDDDEAGPDNYIEFEDEDIDRI  145 (145)
Q Consensus        81 ~~~~~~~Kg~Ii~ry~~deik~Lrk~g~wP~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (145)
                      +|+|+++||+|+|||+++|++||+++|+||+.|.++++++.+.....++++|++|||+|++++-+
T Consensus        81 l~~~d~~KgdIv~ry~~dqvr~Lkk~G~~P~~f~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  145 (145)
T PLN00208         81 LRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGDLDEEEDGEGDDYIEFEDEDIDKI  145 (145)
T ss_pred             ccCCCCCEEEEEEEcCHHHHHHHHHcCCCCcceeeccccccccccccCcccCcceeecccccccC
Confidence            99999999999999999999999999999999999999973322111222567999999998754

>PTZ00329 eukaryotic translation initiation factor 1A; Provisional	Back alignment and domain information

>KOG3403 consensus Translation initiation factor 1A (eIF-1A) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A	Back alignment and domain information

>PRK04012 translation initiation factor IF-1A; Provisional	Back alignment and domain information

>smart00652 eIF1a eukaryotic translation initiation factor 1A	Back alignment and domain information

>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain	Back alignment and domain information

>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain	Back alignment and domain information

>cd05792 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain	Back alignment and domain information

>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins	Back alignment and domain information

>TIGR00008 infA translation initiation factor IF-1	Back alignment and domain information

>PRK12442 translation initiation factor IF-1; Reviewed	Back alignment and domain information

>KOG2925 consensus Predicted translation initiation factor related to eIF-1A [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>CHL00010 infA translation initiation factor 1	Back alignment and domain information

>PRK00276 infA translation initiation factor IF-1; Validated	Back alignment and domain information

>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain	Back alignment and domain information

>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain	Back alignment and domain information

>PRK00098 GTPase RsgA; Reviewed	Back alignment and domain information

>PRK12289 GTPase RsgA; Reviewed	Back alignment and domain information

>PRK12288 GTPase RsgA; Reviewed	Back alignment and domain information

>cd01854 YjeQ_engC YjeQ/EngC	Back alignment and domain information

>PRK01889 GTPase RsgA; Reviewed	Back alignment and domain information

>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain	Back alignment and domain information

>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa	Back alignment and domain information

>TIGR00638 Mop molybdenum-pterin binding domain	Back alignment and domain information

>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner	Back alignment and domain information

>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain	Back alignment and domain information

>PHA02945 interferon resistance protein; Provisional	Back alignment and domain information

>COG1162 Predicted GTPases [General function prediction only]	Back alignment and domain information

>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain	Back alignment and domain information

>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold	Back alignment and domain information

>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised	Back alignment and domain information

>PF15057 DUF4537: Domain of unknown function (DUF4537)	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		145
1d7q_A		143	Human Translation Initiation Factor Eif1a Length =		4e-41
2oqk_A		117	Crystal Structure Of Putative Cryptosporidium Parvu		2e-36
1jt8_A		102	Archaeal Initiation Factor-1a, Aif-1a Length = 102		2e-08
2dgy_A		111	Solution Structure Of The Eukaryotic Initiation Fac		2e-04

>pdb|1D7Q|A Chain A, Human Translation Initiation Factor Eif1a Length = 143

Back alignment and structure

Iteration: 1

Score = 163 bits (412), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 77/99 (77%), Positives = 85/99 (85%) Query: 18 EADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDII 77 E + EKREL+FKEDGQEYAQV++MLGNGR EAMC DG KRLCHIRGK+ KKVWI DII Sbjct: 17 ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDII 76 Query: 78 LVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLN 116 LVGLRDYQD+KADVILKY DEAR LKAYGELPE ++N Sbjct: 77 LVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 115

PyMOL of 1d7q

>pdb|2OQK|A Chain A, Crystal Structure Of Putative Cryptosporidium Parvum Translation Initiation Factor Eif-1a Length = 117

Back alignment and structure

>pdb|1JT8|A Chain A, Archaeal Initiation Factor-1a, Aif-1a Length = 102

Back alignment and structure

>pdb|2DGY|A Chain A, Solution Structure Of The Eukaryotic Initiation Factor 1a In Mgc11102 Protein Length = 111

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		145
1d7q_A		143	Translation initiation factor 1A; OB-fold, beta-ba	9e-49
2oqk_A		117	Putative translation initiation factor EIF-1A; mal	2e-46
1jt8_A		102	EIF-1A, probable translation initiation factor 1A;	5e-36
2dgy_A		111	MGC11102 protein; EIF-1A, structural genomics, NPP	2e-33
3i4o_A		79	Translation initiation factor IF-1; cytoplasm, pro	1e-05
1ah9_A		71	IF1, initiation factor 1; ribosome binding, protei	1e-05
1hr0_W		71	Translation initiation factor; ribosomal subunit,	3e-05

>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5 Length = 143	Back alignment and structure

 Score =  152 bits (385), Expect = 9e-49
 Identities = 106/144 (73%), Positives = 117/144 (81%), Gaps = 1/144 (0%)

Query: 2   PKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHI 61
           PKNKGKGGKNR+RGKNE + EKREL+FKEDGQEYAQV++MLGNGR EAMC DG KRLCHI
Sbjct: 1   PKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHI 60

Query: 62  RGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAA 121
           RGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    
Sbjct: 61  RGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTF 120

Query: 122 GIDDDDEAGPDNYIEFEDEDIDRI 145
           G  DDDE   D+ I  +DEDID I
Sbjct: 121 GPGDDDEIQFDD-IGDDDEDIDDI 143

PyMOL of 1d7q

>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II} Length = 117	Back alignment and structure

>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5 Length = 102	Back alignment and structure

>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 111	Back alignment and structure

>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} Length = 79	Back alignment and structure

>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5 Length = 71	Back alignment and structure

>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W Length = 71	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		145
1d7q_A		143	Translation initiation factor 1A; OB-fold, beta-ba	100.0
2oqk_A		117	Putative translation initiation factor EIF-1A; mal	100.0
2dgy_A		111	MGC11102 protein; EIF-1A, structural genomics, NPP	100.0
1jt8_A		102	EIF-1A, probable translation initiation factor 1A;	100.0
3i4o_A		79	Translation initiation factor IF-1; cytoplasm, pro	99.89
1ah9_A		71	IF1, initiation factor 1; ribosome binding, protei	99.84
1hr0_W		71	Translation initiation factor; ribosomal subunit,	99.83
2rcn_A		358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.27
1t9h_A		307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.14
2yv5_A		302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.46
2k52_A		80	Uncharacterized protein MJ1198; metal-binding, zin	96.11
2wfw_A		153	ARC; ATP-binding protein, proteasomal atpases, PAN	94.96
2khi_A		115	30S ribosomal protein S1; acetylation, phosphoprot	94.49
3h43_A		85	Proteasome-activating nucleotidase; regulatory par	92.29
2wg5_A		109	General control protein GCN4, proteasome-activatin	91.56
2k4k_A		130	GSP13, general stress protein 13; cytoplasm, stres	87.63
3m9b_A		251	Proteasome-associated ATPase; coil COIL with 5 bet	87.29
1ssf_A		156	Transformation related protein 53 binding protein	87.07
1luz_A		88	Protein K3, protein K2; stranded anti-parallel bet	86.47
1kl9_A		182	Eukaryotic translation initiation factor 2 subuni;	86.44
2khj_A		109	30S ribosomal protein S1; OB fold, acetylation, ph	83.72
2g3r_A		123	Tumor suppressor P53-binding protein 1; tandem tud	80.5
2a19_A		175	EIF-2- alpha, eukaryotic translation initiation fa	80.15

>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5	Back alignment and structure

Probab=100.00  E-value=1.7e-52  Score=321.38  Aligned_cols=138  Identities=74%  Similarity=1.199  Sum_probs=128.4

Q ss_pred             CCCCCCCCcccccCCCcccccceeeccCCCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEEe
Q 032228            2 PKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGL   81 (145)
Q Consensus         2 p~~~~~g~kn~rr~~~~~~~~~~el~~p~e~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~   81 (145)
                      |+||||||||+||+|+.++...+++++|+++|++|+|+++|||++|+|+|+||+++|||||||||++|||++||+|+|++
T Consensus         1 p~~~gkggk~~~r~K~~~~~~~~el~~p~ege~~g~V~e~lgn~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~   80 (143)
T 1d7q_A            1 PKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGL   80 (143)
T ss_dssp             CCCCCSSSSSSCCCCCCSCCCCCCCCCCCTTEEEEEEEEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEEC
T ss_pred             CCCCCCCCcccccccccchhhhhcccCCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEecccceeeEEecCCCEEEEee
Confidence            89999999999999999988899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCceEEEEEcChhHHHHHHHcCCCCcccccccccccCCCCCCCCCCCCCccc----cC-ccccCC
Q 032228           82 RDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAAGIDDDDEAGPDNYIEF----ED-EDIDRI  145 (145)
Q Consensus        82 ~~~~~~Kg~Ii~ry~~deik~Lrk~g~wP~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~  145 (145)
                      |+|+++||+|+|||+++|++||+++|+||++|.++++++  |+++    ++++++|    ++ ++||+|
T Consensus        81 ~~yd~~KG~Ii~r~~~devk~L~k~g~wP~~f~~~~~~~--~~~~----~~~~~~f~~~~~~~~~~~~~  143 (143)
T 1d7q_A           81 RDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT--FGPG----DDDEIQFDDIGDDDEDIDDI  143 (143)
T ss_dssp             SSSSSSCCEEEEEECTTTHHHHHHHTSSCTTCCCCCCCS--SSCC----CCCCCCCCCSCSSCCSCSCC
T ss_pred             ccCCCCeEEEEEEeCHHHHHHHHHcCCCChHHhhCcccc--ccCC----CCccceeccCccchhccccC
Confidence            999999999999999999999999999999999999999  8732    2346666    22 378876

PyMOL of 1d7q

>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}	Back alignment and structure

>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5	Back alignment and structure

>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5	Back alignment and structure

>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5	Back alignment and structure

>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W	Back alignment and structure

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V	Back alignment and structure

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8	Back alignment and structure

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}	Back alignment and structure

>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}	Back alignment and structure

>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A	Back alignment and structure

>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}	Back alignment and structure

>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}	Back alignment and structure

>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A	Back alignment and structure

>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}	Back alignment and structure

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A	Back alignment and structure

>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1	Back alignment and structure

>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5	Back alignment and structure

>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5	Back alignment and structure

>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}	Back alignment and structure

>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A	Back alignment and structure

>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		145
d1d7qa_		143	b.40.4.5 (A:) Translation initiation factor-1a, eI	2e-51
d1jt8a_		102	b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a	1e-34
d1ah9a_		71	b.40.4.5 (A:) Translational initiation factor 1, I	2e-19
d1hr0w_		71	b.40.4.5 (W:) Translational initiation factor 1, I	3e-16

>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]} Length = 143	Back information, alignment and structure


class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translation initiation factor-1a, eIF1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  158 bits (400), Expect = 2e-51
 Identities = 106/144 (73%), Positives = 117/144 (81%), Gaps = 1/144 (0%)

Query: 2   PKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHI 61
           PKNKGKGGKNR+RGKNE + EKREL+FKEDGQEYAQV++MLGNGR EAMC DG KRLCHI
Sbjct: 1   PKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHI 60

Query: 62  RGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAA 121
           RGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE    
Sbjct: 61  RGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTF 120

Query: 122 GIDDDDEAGPDNYIEFEDEDIDRI 145
           G  DDDE   D+ I  +DEDID I
Sbjct: 121 GPGDDDEIQFDD-IGDDDEDIDDI 143

PyMOL of d1d7qa_

>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 102	Back information, alignment and structure

>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} Length = 71	Back information, alignment and structure

>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} Length = 71	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		145
d1d7qa_		143	Translation initiation factor-1a, eIF1a {Human (Ho	100.0
d1jt8a_		102	Archaeal initiation factor-1a, aIF1a {Archaeon Met	99.97
d1ah9a_		71	Translational initiation factor 1, IF1 {Escherichi	99.91
d1hr0w_		71	Translational initiation factor 1, IF1 {Escherichi	99.88
d1t9ha1		67	Probable GTPase EngC (YjeQ), N-terminal domain {Ba	98.51
d1u0la1		66	Probable GTPase EngC (YjeQ), N-terminal domain {Th	98.51
d1kl9a2		86	Eukaryotic initiation factor 2alpha, eIF2alpha, N-	89.22
d3d3ra1		76	Hydrogenase expression/formation protein HypC {She	86.75
d1g2914		71	Maltose transport protein MalK, C-terminal domain	83.13
d1h9ma2		68	Cytoplasmic molybdate-binding protein ModG {Azotob	80.16

>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translation initiation factor-1a, eIF1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-42  Score=260.73  Aligned_cols=142  Identities=71%  Similarity=1.119  Sum_probs=127.5

Q ss_pred             CCCCCCCCcccccCCCcccccceeeccCCCCeEEEEEEEeCCCceEEEEeCCCCEEEEEecccccceEEEccCCEEEEEe
Q 032228            2 PKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGL   81 (145)
Q Consensus         2 p~~~~~g~kn~rr~~~~~~~~~~el~~p~e~q~ig~Vv~~lG~~~~~V~~~dG~~~la~IpGK~Rk~IwIk~GD~VlVe~   81 (145)
                      |||+++|+||+|++++.+....++++.|+++|+||+|+++||+++|+|.|.||.++||+||||||+++||.+||+|||.+
T Consensus         1 pKN~~~g~k~kk~~k~~~~~~~~~l~~~ee~e~ya~V~k~lG~~~~~V~~~dg~~rl~~irgk~r~r~~i~~Gd~VlV~~   80 (143)
T d1d7qa_           1 PKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGL   80 (143)
T ss_dssp             CCCCCSSSSSSCCCCCCSCCCCCCCCCCCTTEEEEEEEEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEEC
T ss_pred             CCCCCCCccccccccccCcccceeeccCCCCeEEEEEEEEcCCCEEEEEECCCCEEEEEecCcceeEEEEeCCCEEEEec
Confidence            99999999999999988888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCceEEEEEcChhHHHHHHHcCCCCcccccccccccCCCCCCC-CCCCCCccccCccccCC
Q 032228           82 RDYQDDKADVILKYMPDEARLLKAYGELPETTRLNEGIAAGIDDDDE-AGPDNYIEFEDEDIDRI  145 (145)
Q Consensus        82 ~~~~~~Kg~Ii~ry~~deik~Lrk~g~wP~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  145 (145)
                      |+|++.||+|+|+|+++|+++|+++++||..|..+..++  ++...+ ...+.++.++++++|+|
T Consensus        81 rd~e~~K~DIl~~Y~~~e~~~L~~~~~ip~~~~~~~~~~--~~~~~d~~i~F~~~~~dd~d~d~i  143 (143)
T d1d7qa_          81 RDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT--FGPGDDDEIQFDDIGDDDEDIDDI  143 (143)
T ss_dssp             SSSSSSCCEEEEEECTTTHHHHHHHTSSCTTCCCCCCCS--SSCCCCCCCCCCCSCSSCCSCSCC
T ss_pred             cCCcCcEEEEEEECCHHHHHHHHHCCCCChhhhhccccC--CCCccccceeecCCCCCccccccC
Confidence            999999999999999999999999999999998877666  444333 22233444478888876

PyMOL of d1d7qa_

>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal domain {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1u0la1 b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3d3ra1 b.40.14.1 (A:1-76) Hydrogenase expression/formation protein HypC {Shewanella oneidensis [TaxId: 70863]}	Back information, alignment and structure

>d1g2914 b.40.6.3 (1:302-372) Maltose transport protein MalK, C-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}	Back information, alignment and structure

>d1h9ma2 b.40.6.2 (A:74-141) Cytoplasmic molybdate-binding protein ModG {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure