Citrus Sinensis ID: 032231

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLINFDC
Secondary Structure (PSIPRED)
ccccccEEEEEEEcccccEEEEEccccccccHHHHHHHHHHHHHHHHcccccccccEEEEccEEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccEEEEEcccEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEcccccEEEEEEcccccccHHHHHHHHHHHHHHHHHcccccccEEEEEcccEEEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHccccEEEEccccEEEEccc
Coil and Loop (DISEMBL)
mdtcpsiknillldsEGKRVAVKYysndwptnsaKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFfvtggedeNELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLINFDC
Flexible Loop (DISEMBL)
mdtcpsiknillldsegKRVAVKYYsndwptnsakEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLINFDC
Low Complexity Region (SEG)
MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAlenldlillcldeiVDGGYATCYSFILLINFDC
Disordered region (IsUnstruct)
******IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLINF**
Disordered Region (DISOPRED)
*DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLINFDC
Disordered Region (DISEMBL)
MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLINFDC
Disordered Region (DISPRO)
**TCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLINFDC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLINFDC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
Q940S5	177	Coatomer subunit zeta-1 O	yes	no	0.896	0.734	0.792	6e-58
Q84LG4	179	Coatomer subunit zeta-2 O	no	no	0.889	0.720	0.806	6e-58
Q8H1F4	181	Coatomer subunit zeta-3 O	no	no	0.889	0.712	0.782	1e-56
Q9MAX5	177	Coatomer subunit zeta-1 O	yes	no	0.896	0.734	0.776	2e-56
Q6Z844	182	Coatomer subunit zeta-2 O	no	no	0.889	0.708	0.759	4e-55
Q5NA06	177	Coatomer subunit zeta-3 O	no	no	0.896	0.734	0.723	1e-53
P35604	177	Coatomer subunit zeta-1 O	yes	no	0.834	0.683	0.48	3e-27
Q5R5F2	177	Coatomer subunit zeta-1 O	yes	no	0.834	0.683	0.472	1e-26
P61924	177	Coatomer subunit zeta-1 O	yes	no	0.834	0.683	0.472	1e-26
P61923	177	Coatomer subunit zeta-1 O	yes	no	0.834	0.683	0.472	1e-26

>sp|Q940S5|COPZ1_ARATH Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN=At1g60970 PE=2 SV=1

 Score =  222 bits (566), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 103/130 (79%), Positives = 117/130 (90%)

Query: 1   MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
           M+  P +KNILLLDSEGKRVAVKYYS+DWPTNSA+EAFEK+VFTKTQKTNARTE E+  L
Sbjct: 1   MELPPKVKNILLLDSEGKRVAVKYYSDDWPTNSAQEAFEKSVFTKTQKTNARTEVEVTAL 60

Query: 61  EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 120
           E N++VYKFVQDLHFFVTGGE+ENELILA+VL+G FDAV LLLR NVDK+EAL+NLDLI 
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKREALDNLDLIF 120

Query: 121 LCLDEIVDGG 130
           L  DEI+DGG
Sbjct: 121 LSFDEIIDGG 130

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q84LG4|COPZ2_ARATH Coatomer subunit zeta-2 OS=Arabidopsis thaliana GN=At3g09800 PE=2 SV=1

 Score =  222 bits (565), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 104/129 (80%), Positives = 117/129 (90%)

Query: 2   DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
           D+CP +KNILLLDSEGKRVAVKYYS+DWPTN+AK +FEK VF+KT KTNARTEAEI +L+
Sbjct: 4   DSCPLVKNILLLDSEGKRVAVKYYSDDWPTNAAKLSFEKYVFSKTSKTNARTEAEITLLD 63

Query: 62  GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILL 121
            N+IVYKF QDLHFFVTGGE+ENELILA+VLQGFFDAV LLLR NV+K EALENLDLI L
Sbjct: 64  SNIIVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEKMEALENLDLIFL 123

Query: 122 CLDEIVDGG 130
           CLDE+VD G
Sbjct: 124 CLDEMVDQG 132

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1F4|COPZ3_ARATH Coatomer subunit zeta-3 OS=Arabidopsis thaliana GN=At4g08520 PE=2 SV=1

 Score =  218 bits (554), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 101/129 (78%), Positives = 116/129 (89%)

Query: 2   DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
           D+CP +KNILLLDSEGKRVAVKYYS+DW TN++K AFEK VF+KT KTNARTEAEI +LE
Sbjct: 6   DSCPLVKNILLLDSEGKRVAVKYYSDDWATNASKLAFEKYVFSKTSKTNARTEAEITLLE 65

Query: 62  GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILL 121
            N++VYKF QDLHFFVTGGE+ENEL+L++VLQGFFDAV LLLR NV+K EALENLDLI L
Sbjct: 66  SNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKMEALENLDLIFL 125

Query: 122 CLDEIVDGG 130
           CLDE+VD G
Sbjct: 126 CLDEMVDQG 134

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MAX5|COPZ1_ORYSJ Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica GN=COPZ1 PE=2 SV=1

 Score =  217 bits (553), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 101/130 (77%), Positives = 117/130 (90%)

Query: 1   MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
           M++CPS+KNILLLDSEGKRVAVKYY++DWPT SAK AFEK+VF KTQK  A  EAEI M 
Sbjct: 1   MESCPSVKNILLLDSEGKRVAVKYYTDDWPTLSAKLAFEKSVFVKTQKATAGAEAEIVMF 60

Query: 61  EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 120
           +G+++VYKF+QDLHFFVTGGE+ENELILA+VLQGF DAV ++LR NVDK+ ALENLDLIL
Sbjct: 61  DGHIVVYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDIILRNNVDKRTALENLDLIL 120

Query: 121 LCLDEIVDGG 130
           LCLDEIVDGG
Sbjct: 121 LCLDEIVDGG 130

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z844|COPZ2_ORYSJ Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica GN=COPZ2 PE=2 SV=1

 Score =  213 bits (541), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 98/129 (75%), Positives = 119/129 (92%)

Query: 2   DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
           ++CPS+KNILLLDSEGKRVAVKY+S+DW +N++K AFEK+VFTKT KTNAR+EAEI + +
Sbjct: 7   ESCPSVKNILLLDSEGKRVAVKYFSDDWSSNASKLAFEKSVFTKTLKTNARSEAEITLFD 66

Query: 62  GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILL 121
           G ++VYKFVQDLHFFVT G+DENELI+A VLQGF D+VGLLLRG+V+K+ ALENLDLILL
Sbjct: 67  GYIVVYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLRGDVEKRTALENLDLILL 126

Query: 122 CLDEIVDGG 130
           C+DEIVDGG
Sbjct: 127 CIDEIVDGG 135

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5NA06|COPZ3_ORYSJ Coatomer subunit zeta-3 OS=Oryza sativa subsp. japonica GN=Os01g0838800 PE=2 SV=1

 Score =  208 bits (529), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 94/130 (72%), Positives = 115/130 (88%)

Query: 1   MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
           M++CPS+KNIL+LDSEGKRVAVKYYS+DWP+ S+K+AFEK+VF KTQKT+ARTEAEI M 
Sbjct: 1   MESCPSVKNILVLDSEGKRVAVKYYSDDWPSLSSKQAFEKSVFAKTQKTSARTEAEIVMF 60

Query: 61  EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 120
           +   +VYKF+QDLHFFVTGG++ENELILA+VLQGF +A+  LLR  V ++ ALENLDLI 
Sbjct: 61  DSYFVVYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRRAALENLDLIF 120

Query: 121 LCLDEIVDGG 130
           LCLDE+VDGG
Sbjct: 121 LCLDEVVDGG 130

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P35604|COPZ1_BOVIN Coatomer subunit zeta-1 OS=Bos taurus GN=COPZ1 PE=1 SV=2

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/125 (48%), Positives = 88/125 (70%), Gaps = 4/125 (3%)

Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
           ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct: 12  TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query: 66  VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
           VYK   DL+F+V G   ENEL+L TVL   FD++  +LR NV+K+  LEN++ + L +DE
Sbjct: 68  VYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127

Query: 126 IVDGG 130
           IVDGG
Sbjct: 128 IVDGG 132

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Bos taurus (taxid: 9913)

>sp|Q5R5F2|COPZ1_PONAB Coatomer subunit zeta-1 OS=Pongo abelii GN=COPZ1 PE=2 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/125 (47%), Positives = 87/125 (69%), Gaps = 4/125 (3%)

Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
           ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct: 12  TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query: 66  VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
           VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+  LEN++ + L +DE
Sbjct: 68  VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127

Query: 126 IVDGG 130
           IVDGG
Sbjct: 128 IVDGG 132

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Pongo abelii (taxid: 9601)

>sp|P61924|COPZ1_MOUSE Coatomer subunit zeta-1 OS=Mus musculus GN=Copz1 PE=2 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/125 (47%), Positives = 87/125 (69%), Gaps = 4/125 (3%)

Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
           ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct: 12  TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query: 66  VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
           VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+  LEN++ + L +DE
Sbjct: 68  VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127

Query: 126 IVDGG 130
           IVDGG
Sbjct: 128 IVDGG 132

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Mus musculus (taxid: 10090)

>sp|P61923|COPZ1_HUMAN Coatomer subunit zeta-1 OS=Homo sapiens GN=COPZ1 PE=1 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/125 (47%), Positives = 87/125 (69%), Gaps = 4/125 (3%)

Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
           ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct: 12  TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query: 66  VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
           VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+  LEN++ + L +DE
Sbjct: 68  VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127

Query: 126 IVDGG 130
           IVDGG
Sbjct: 128 IVDGG 132

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
297740639	200	unnamed protein product [Vitis vinifera]	0.896	0.65	0.892	8e-64
225463398	177	PREDICTED: coatomer subunit zeta-1-like	0.896	0.734	0.892	8e-64
449433700	177	PREDICTED: coatomer subunit zeta-2-like	0.896	0.734	0.876	2e-62
225442214	183	PREDICTED: coatomer subunit zeta-2 [Viti	0.875	0.693	0.881	7e-61
350534688	184	nonclathrin coat protein zeta1-COP [Sola	0.889	0.701	0.852	6e-60
351727329	179	nonclathrin coat protein zeta2-COP [Glyc	0.889	0.720	0.852	1e-59
351726924	180	nonclathrin coat protein zeta1-COP [Glyc	0.875	0.705	0.881	2e-59
351727975	179	uncharacterized protein LOC100527022 [Gl	0.889	0.720	0.852	4e-59
56311396	180	coatomer zeta1 subunit [Medicago truncat	0.875	0.705	0.874	1e-58
357513687	1280	Coatomer subunit zeta-3 [Medicago trunca	0.875	0.099	0.866	3e-58

>gi|297740639|emb|CBI30821.3| unnamed protein product [Vitis vinifera]

 Score =  248 bits (632), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 116/130 (89%), Positives = 126/130 (96%)

Query: 1   MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
           M++CPS+KNILLLDSEGKRVAVKYY +DWPTN+AKE FEK+VF+KTQKTNARTEAEIAM 
Sbjct: 24  MESCPSVKNILLLDSEGKRVAVKYYCDDWPTNNAKETFEKSVFSKTQKTNARTEAEIAMF 83

Query: 61  EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 120
           E N++VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL
Sbjct: 84  ENNIVVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 143

Query: 121 LCLDEIVDGG 130
           LCLDEI+DGG
Sbjct: 144 LCLDEIIDGG 153

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463398|ref|XP_002273766.1| PREDICTED: coatomer subunit zeta-1-like isoform 1 [Vitis vinifera]

 Score =  248 bits (632), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 116/130 (89%), Positives = 126/130 (96%)

Query: 1   MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
           M++CPS+KNILLLDSEGKRVAVKYY +DWPTN+AKE FEK+VF+KTQKTNARTEAEIAM 
Sbjct: 1   MESCPSVKNILLLDSEGKRVAVKYYCDDWPTNNAKETFEKSVFSKTQKTNARTEAEIAMF 60

Query: 61  EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 120
           E N++VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL
Sbjct: 61  ENNIVVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 120

Query: 121 LCLDEIVDGG 130
           LCLDEI+DGG
Sbjct: 121 LCLDEIIDGG 130

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433700|ref|XP_004134635.1| PREDICTED: coatomer subunit zeta-2-like [Cucumis sativus]

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/130 (87%), Positives = 125/130 (96%)

Query: 1   MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
           MD+CPSIKNILLLDSEGKRVAVKYYS++WPTNSA+E FEKAVF+KTQK+NAR EAEIAM 
Sbjct: 1   MDSCPSIKNILLLDSEGKRVAVKYYSDEWPTNSARETFEKAVFSKTQKSNARNEAEIAMF 60

Query: 61  EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLIL 120
           E N+++YKFVQDLHFFVTGGE ENELILATVLQGFFDAVGLLLRG+V+KKEALENLDLIL
Sbjct: 61  ENNIVIYKFVQDLHFFVTGGEYENELILATVLQGFFDAVGLLLRGHVEKKEALENLDLIL 120

Query: 121 LCLDEIVDGG 130
           LCLDEIVDGG
Sbjct: 121 LCLDEIVDGG 130

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442214|ref|XP_002277175.1| PREDICTED: coatomer subunit zeta-2 [Vitis vinifera] gi|297743043|emb|CBI35910.3| unnamed protein product [Vitis vinifera]

 Score =  238 bits (607), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 112/127 (88%), Positives = 121/127 (95%)

Query: 4   CPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGN 63
           CPSIKNILLLDSEGKRVAVKYYS+DWPTN+AK AFEK+VFTKTQKTNARTEAEIAM E N
Sbjct: 10  CPSIKNILLLDSEGKRVAVKYYSDDWPTNAAKLAFEKSVFTKTQKTNARTEAEIAMFENN 69

Query: 64  VIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCL 123
           V++YKF+QDLHFFVTGG+DENELILATVLQGF DAV LLLR N+DK+EALENLDLILLCL
Sbjct: 70  VVIYKFIQDLHFFVTGGDDENELILATVLQGFSDAVALLLRNNIDKREALENLDLILLCL 129

Query: 124 DEIVDGG 130
           DEIVDGG
Sbjct: 130 DEIVDGG 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350534688|ref|NP_001233898.1| nonclathrin coat protein zeta1-COP [Solanum lycopersicum] gi|7259352|dbj|BAA92781.1| nonclathrin coat protein zeta1-COP [Solanum lycopersicum]

 Score =  235 bits (599), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 110/129 (85%), Positives = 122/129 (94%)

Query: 2   DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
           D+CP +KNILLLDSEGKRVAVKYYS+DWPTN+AK AFEK++FTKTQKTNARTEAEI M E
Sbjct: 9   DSCPVVKNILLLDSEGKRVAVKYYSDDWPTNNAKVAFEKSIFTKTQKTNARTEAEITMFE 68

Query: 62  GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILL 121
            N+IVYKFVQDLHFFVTGG+DENEL+LATVLQGF+DAV LLLR NVD++EALENLDLILL
Sbjct: 69  NNIIVYKFVQDLHFFVTGGDDENELVLATVLQGFYDAVTLLLRNNVDQREALENLDLILL 128

Query: 122 CLDEIVDGG 130
           CLDEIVDGG
Sbjct: 129 CLDEIVDGG 137

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727329|ref|NP_001236901.1| nonclathrin coat protein zeta2-COP [Glycine max] gi|7363244|dbj|BAA93004.1| nonclathrin coat protein zeta2-COP [Glycine max]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 110/129 (85%), Positives = 121/129 (93%)

Query: 2   DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
           +TCPS+KN+LLLDS+GKRVAVKY+S DWPTNSAKE FEK VF KTQKTNARTEAEIAM E
Sbjct: 4   ETCPSVKNVLLLDSDGKRVAVKYFSEDWPTNSAKENFEKVVFNKTQKTNARTEAEIAMFE 63

Query: 62  GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILL 121
            N+++YKFVQDLHFFVTGG+ ENELILATVLQ FFD+VGLLLRGNVDKKEALENLDLILL
Sbjct: 64  NNIVLYKFVQDLHFFVTGGDYENELILATVLQAFFDSVGLLLRGNVDKKEALENLDLILL 123

Query: 122 CLDEIVDGG 130
           C+DEIVDGG
Sbjct: 124 CIDEIVDGG 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726924|ref|NP_001236887.1| nonclathrin coat protein zeta1-COP [Glycine max] gi|356526001|ref|XP_003531608.1| PREDICTED: coatomer subunit zeta-1-like [Glycine max] gi|7259348|dbj|BAA92779.1| nonclathrin coat protein zeta1-COP [Glycine max] gi|255626379|gb|ACU13534.1| unknown [Glycine max]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/127 (88%), Positives = 120/127 (94%)

Query: 4   CPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGN 63
           CPSIKNILLLDSEGKRVAVKYYS+DWPTN+AK AFEK VFTKT KTNARTEAE+ +LE N
Sbjct: 7   CPSIKNILLLDSEGKRVAVKYYSDDWPTNNAKLAFEKFVFTKTVKTNARTEAEVTLLENN 66

Query: 64  VIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCL 123
           +I+YKFVQDLHFFVTGGEDENELILA+VLQGFFDAV LLLR NVDK+EALENLDLILLCL
Sbjct: 67  IIIYKFVQDLHFFVTGGEDENELILASVLQGFFDAVTLLLRSNVDKREALENLDLILLCL 126

Query: 124 DEIVDGG 130
           DEIVDGG
Sbjct: 127 DEIVDGG 133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727975|ref|NP_001237435.1| uncharacterized protein LOC100527022 [Glycine max] gi|255631384|gb|ACU16059.1| unknown [Glycine max]

 Score =  232 bits (591), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 110/129 (85%), Positives = 120/129 (93%)

Query: 2   DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
           +TCPS+KN+LLLDS+GKRVAVKY+S DW TNSAKE FEK VF KTQKTNARTEAEIAM E
Sbjct: 4   ETCPSVKNVLLLDSDGKRVAVKYFSEDWATNSAKENFEKVVFNKTQKTNARTEAEIAMFE 63

Query: 62  GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILL 121
            N++VYKFVQDLHFFVTGG+ ENELILATVLQ FFD+VGLLLRGNVDKKEALENLDLILL
Sbjct: 64  NNIVVYKFVQDLHFFVTGGDYENELILATVLQAFFDSVGLLLRGNVDKKEALENLDLILL 123

Query: 122 CLDEIVDGG 130
           C+DEIVDGG
Sbjct: 124 CIDEIVDGG 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56311396|emb|CAI29266.1| coatomer zeta1 subunit [Medicago truncatula] gi|388493944|gb|AFK35038.1| unknown [Medicago truncatula] gi|388496304|gb|AFK36218.1| unknown [Medicago truncatula]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 111/127 (87%), Positives = 119/127 (93%)

Query: 4   CPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGN 63
           CPSIKNILLLDSEGKRVAVKYYS+DWPTNS+K AFEK VFTKT KTNARTEAEI +LE N
Sbjct: 7   CPSIKNILLLDSEGKRVAVKYYSDDWPTNSSKLAFEKFVFTKTVKTNARTEAEITLLENN 66

Query: 64  VIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCL 123
           ++VYKFVQDLHFFVTGG+DENELIL++VLQGFFDAV LLLR NVDK EALENLDLILLCL
Sbjct: 67  IVVYKFVQDLHFFVTGGDDENELILSSVLQGFFDAVTLLLRSNVDKSEALENLDLILLCL 126

Query: 124 DEIVDGG 130
           DEIVDGG
Sbjct: 127 DEIVDGG 133

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513687|ref|XP_003627132.1| Coatomer subunit zeta-3 [Medicago truncatula] gi|355521154|gb|AET01608.1| Coatomer subunit zeta-3 [Medicago truncatula]

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 110/127 (86%), Positives = 119/127 (93%)

Query: 4    CPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGN 63
            CPSIKNILLLDSEGKRVAVKYYS+DWPTNS+K AFEK VFT+T KTNARTEAEI +LE N
Sbjct: 1107 CPSIKNILLLDSEGKRVAVKYYSDDWPTNSSKLAFEKFVFTETVKTNARTEAEITLLENN 1166

Query: 64   VIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCL 123
            ++VYKFVQDLHFFVTGG+DENELIL++VLQGFFDAV LLLR NVDK EALENLDLILLCL
Sbjct: 1167 IVVYKFVQDLHFFVTGGDDENELILSSVLQGFFDAVTLLLRSNVDKSEALENLDLILLCL 1226

Query: 124  DEIVDGG 130
            DEIVDGG
Sbjct: 1227 DEIVDGG 1233

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
TAIR|locus:2206026	177	AT1G60970 [Arabidopsis thalian	0.896	0.734	0.715	4.8e-46
TAIR|locus:2133569	181	AT4G08520 [Arabidopsis thalian	0.765	0.613	0.774	1.7e-43
UNIPROTKB|P35604	177	COPZ1 "Coatomer subunit zeta-1	0.834	0.683	0.424	3.9e-21
ZFIN|ZDB-GENE-000406-6	198	copz1 "coatomer protein comple	0.834	0.611	0.408	3.9e-21
UNIPROTKB|E2QZL1	177	COPZ1 "Uncharacterized protein	0.834	0.683	0.416	1.3e-20
UNIPROTKB|F6Y3Y5	186	COPZ1 "Uncharacterized protein	0.834	0.650	0.416	1.3e-20
UNIPROTKB|J9PAP6	177	COPZ1 "Uncharacterized protein	0.834	0.683	0.416	1.3e-20
UNIPROTKB|F8VS17	160	COPZ1 "Coatomer subunit zeta-1	0.834	0.756	0.416	1.3e-20
UNIPROTKB|F8VWL5	185	COPZ1 "Coatomer subunit zeta-1	0.834	0.654	0.416	1.3e-20
UNIPROTKB|F8VYZ4	163	COPZ1 "Coatomer subunit zeta-1	0.834	0.742	0.416	1.3e-20

TAIR|locus:2206026 AT1G60970 [Arabidopsis thaliana (taxid:3702)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 93/130 (71%), Positives = 106/130 (81%)

Query:     1 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAML 60
             M+  P +KNILLLDSEGKRVAVKYYS+DWPTNSA+EAFEK+VFTKTQKTNARTE E+  L
Sbjct:     1 MELPPKVKNILLLDSEGKRVAVKYYSDDWPTNSAQEAFEKSVFTKTQKTNARTEVEVTAL 60

Query:    61 EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXX 120
             E N++VYKFVQDLHFFVTGGE+ENELILA+VL+G FDAV LLLR NVDK+EA        
Sbjct:    61 ENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKREALDNLDLIF 120

Query:   121 XXXXXXVDGG 130
                   +DGG
Sbjct:   121 LSFDEIIDGG 130

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0030125 "clathrin vesicle coat" evidence=ISS

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2133569 AT4G08520 [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 86/111 (77%), Positives = 100/111 (90%)

Query:     2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLE 61
             D+CP +KNILLLDSEGKRVAVKYYS+DW TN++K AFEK VF+KT KTNARTEAEI +LE
Sbjct:     6 DSCPLVKNILLLDSEGKRVAVKYYSDDWATNASKLAFEKYVFSKTSKTNARTEAEITLLE 65

Query:    62 GNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEA 112
              N++VYKF QDLHFFVTGGE+ENEL+L++VLQGFFDAV LLLR NV+K EA
Sbjct:    66 SNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEKMEA 116

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0030125 "clathrin vesicle coat" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|P35604 COPZ1 "Coatomer subunit zeta-1" [Bos taurus (taxid:9913)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 53/125 (42%), Positives = 77/125 (61%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXX 125
             VYK   DL+F+V G   ENEL+L TVL   FD++  +LR NV+K+               
Sbjct:    68 VYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127

Query:   126 XVDGG 130
              VDGG
Sbjct:   128 IVDGG 132

GO:0003674 "molecular_function" evidence=ND

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0030126 "COPI vesicle coat" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IEA

ZFIN|ZDB-GENE-000406-6 copz1 "coatomer protein complex, subunit zeta 1" [Danio rerio (taxid:7955)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 51/125 (40%), Positives = 78/125 (62%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K +L++D++G+R+  KYY + +PT   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    33 TVKAVLIMDNDGERLYAKYYDDTYPTVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 88

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXX 125
             VYK   DL+F+V G   ENEL+L +VL   FD++  +LR NV+K+               
Sbjct:    89 VYKSNIDLYFYVIGSSHENELMLMSVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 148

Query:   126 XVDGG 130
              VDGG
Sbjct:   149 IVDGG 153

GO:0006810 "transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0002088 "lens development in camera-type eye" evidence=IMP

UNIPROTKB|E2QZL1 COPZ1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 52/125 (41%), Positives = 76/125 (60%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXX 125
             VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+               
Sbjct:    68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127

Query:   126 XVDGG 130
              VDGG
Sbjct:   128 IVDGG 132

GO:0030117 "membrane coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|F6Y3Y5 COPZ1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 52/125 (41%), Positives = 76/125 (60%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    21 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 76

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXX 125
             VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+               
Sbjct:    77 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 136

Query:   126 XVDGG 130
              VDGG
Sbjct:   137 IVDGG 141

GO:0030117 "membrane coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|J9PAP6 COPZ1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 52/125 (41%), Positives = 76/125 (60%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXX 125
             VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+               
Sbjct:    68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127

Query:   126 XVDGG 130
              VDGG
Sbjct:   128 IVDGG 132

GO:0030117 "membrane coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|F8VS17 COPZ1 "Coatomer subunit zeta-1" [Homo sapiens (taxid:9606)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 52/125 (41%), Positives = 76/125 (60%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXX 125
             VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+               
Sbjct:    68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127

Query:   126 XVDGG 130
              VDGG
Sbjct:   128 IVDGG 132

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

UNIPROTKB|F8VWL5 COPZ1 "Coatomer subunit zeta-1" [Homo sapiens (taxid:9606)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 52/125 (41%), Positives = 76/125 (60%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    20 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 75

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXX 125
             VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+               
Sbjct:    76 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 135

Query:   126 XVDGG 130
              VDGG
Sbjct:   136 IVDGG 140

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

UNIPROTKB|F8VYZ4 COPZ1 "Coatomer subunit zeta-1" [Homo sapiens (taxid:9606)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 52/125 (41%), Positives = 76/125 (60%)

Query:     6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
             ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct:    12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67

Query:    66 VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXX 125
             VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+               
Sbjct:    68 VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127

Query:   126 XVDGG 130
              VDGG
Sbjct:   128 IVDGG 132

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9MAX5	COPZ1_ORYSJ	No assigned EC number	0.7769	0.8965	0.7344	yes	no
Q940S5	COPZ1_ARATH	No assigned EC number	0.7923	0.8965	0.7344	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	145
COG5541	187	COG5541, RET3, Vesicle coat complex COPI, zeta sub	3e-19
pfam01217	142	pfam01217, Clat_adaptor_s, Clathrin adaptor comple	1e-14

>gnl|CDD|227828 COG5541, RET3, Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 79.2 bits (195), Expect = 3e-19
 Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 13/134 (9%)

Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPT-------NSAK--EAFEKAVFTKTQKTNARTEAE 56
            ++ +L+LDS+G+R+  KYY     +       NS K  + FEK +  KT K        
Sbjct: 7   DVEALLILDSQGERIYRKYYQPPHRSEGHQLVFNSVKKEKEFEKKLAEKTAKD----RES 62

Query: 57  IAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENL 116
           I M    +++ K + D+  ++    +ENE  L  V      A+ L+++   DK+   EN 
Sbjct: 63  ILMFYDRLVMCKRLDDVLLYIVSPMEENEPFLGQVFDEIRAALILIVKTPTDKRNVWENY 122

Query: 117 DLILLCLDEIVDGG 130
           D I+L +DE +D G
Sbjct: 123 DQIVLLVDETIDEG 136

Length = 187

>gnl|CDD|110234 pfam01217, Clat_adaptor_s, Clathrin adaptor complex small chain

 Score = 65.8 bits (161), Expect = 1e-14
 Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 7   IKNILLLDSEGKRVAVKYYSNDWPTNSAKE--AFEKAVFTKTQKTNARTEAEIAMLEGNV 64
           IK IL+ + +GK    K+Y+   P +  ++    E+     + +      +         
Sbjct: 2   IKAILIFNRQGKPRLAKWYT---PYSDPEQQKLIEQIYALISARKP--KMSNFIEFNDLK 56

Query: 65  IVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLD 124
           ++YK    L+F V   + +NELI+  ++  F +++     GNV + + + N + + L LD
Sbjct: 57  VIYKRYATLYFVVIVDDQDNELIILELIHRFVESLDRYF-GNVCELDLIFNFEKVYLILD 115

Query: 125 EIVDGG 130
           E+V GG
Sbjct: 116 EMVMGG 121

Length = 142

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
KOG3343	175	consensus Vesicle coat complex COPI, zeta subunit	100.0
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	100.0
COG5030	152	APS2 Clathrin adaptor complex, small subunit [Intr	100.0
KOG0936	182	consensus Clathrin adaptor complex, small subunit	100.0
KOG0934	145	consensus Clathrin adaptor complex, small subunit	100.0
KOG0935	143	consensus Clathrin adaptor complex, small subunit	100.0
COG5541	187	RET3 Vesicle coat complex COPI, zeta subunit [Post	99.96
KOG0938	446	consensus Adaptor complexes medium subunit family	99.87
KOG0937	424	consensus Adaptor complexes medium subunit family	99.73
KOG2740	418	consensus Clathrin-associated protein medium chain	99.41
KOG2635	512	consensus Medium subunit of clathrin adaptor compl	98.29
PF15001	189	AP-5_subunit_s1: AP-5 complex subunit sigma-1	97.62
PF08923	119	MAPKK1_Int: Mitogen-activated protein kinase kinas	97.34
PF03164	415	Mon1: Trafficking protein Mon1; InterPro: IPR00435	94.87
PF13774	83	Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3	87.52
KOG0862	216	consensus Synaptobrevin/VAMP-like protein SEC22 [I	85.57

>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-40  Score=242.75  Aligned_cols=138  Identities=52%  Similarity=0.809  Sum_probs=133.1

Q ss_pred             CCccceeEEEEEcCCCCEEEEecCCCCCCC-hHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEec
Q 032231            2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPT-NSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGG   80 (145)
Q Consensus         2 ~~~~~I~~i~iln~~G~~~~~kyY~~~~~~-~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~   80 (145)
                      -|+|.|+|++|+|++|+|+++|||++++++ .++|++|||.+|+|+.+.    +++|..++|..+|||.+-||+||++|+
T Consensus         4 ~sly~vk~iliLD~~G~Ri~aKYY~~~~~s~vkeqkaFEK~lF~KT~kt----~~eI~~ldg~~vvYk~~~Dl~fyv~G~   79 (175)
T KOG3343|consen    4 LSLYTVKAILILDSDGKRILAKYYDDPHPSTVKEQKAFEKNLFSKTSKT----ESEILLLDGNTVVYKSVIDLHFYVVGS   79 (175)
T ss_pred             cchhhhheEEEEcCCCCEeeeeecCCCcchhHHHHHHHHHHHhcccccc----cceeEEecCcEEEEEecccEEEEEecC
Confidence            479999999999999999999999999887 899999999999999975    689999999999999999999999999


Q ss_pred             CCccHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHHHHHhcCcEEeeechhhhccc
Q 032231           81 EDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLINF  143 (145)
Q Consensus        81 ~~eNEl~l~e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lilDEiid~G~i~et~~~~il~~  143 (145)
                      .+|||++|.++++++.++++..+++|++++.+++|+|.+++++||+||+|+|+||++..|..|
T Consensus        80 ~~ENEl~L~svL~~l~dal~llLr~nveKr~llEN~D~i~L~~DEiiD~GvILEtdp~~ia~r  142 (175)
T KOG3343|consen   80 EEENELMLMSVLTCLFDALSLLLRKNVEKRELLENLDLIFLALDEIIDGGVILETDPNQIAQR  142 (175)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhChhHHHHHhhhccceeehhhhccCceEEecCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998765

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=100.00  E-value=1.8e-38  Score=232.25  Aligned_cols=134  Identities=35%  Similarity=0.538  Sum_probs=117.7

Q ss_pred             ceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecCCccH
Q 032231            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (145)
Q Consensus         6 ~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNE   85 (145)
                      ||+|++|+|++|+++++|||++. ++. +++++.+++.++..++++ ..+|++.++++++||++++||||+++++.++||
T Consensus         1 MI~~i~i~n~~G~~i~~k~y~~~-~~~-~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNe   77 (141)
T PF01217_consen    1 MIKAILILNSQGKRILSKYYRDV-SEE-ERQKLFEKFIKKKSSRNS-KQSPIFEHDNYRIVYKRYSDLYFVVVGDENENE   77 (141)
T ss_dssp             SEEEEEEEETTSEEEEEEESSTS-TSH-HHHHHHHHHHHHHHTSSS-SSTSEEEETTEEEEEEEETTEEEEEEESSTSBH
T ss_pred             CEEEEEEEcCCCCEEEehhcCCc-cHH-HHHHHHHHHHHHHHhccc-ccceeeecccceeeeEeeccEEEEEEeecccch
Confidence            89999999999999999999654 444 556666666666665542 248999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHHHHHhcCcEEeeechhhhccc
Q 032231           86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLINF  143 (145)
Q Consensus        86 l~l~e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lilDEiid~G~i~et~~~~il~~  143 (145)
                      ++++++|++++++|+.+|| ++||+++++||+++|++|||+||+|+|+||+++.|++|
T Consensus        78 l~~~e~l~~~v~~l~~~~~-~v~e~~i~~N~~~v~~~LDEiid~G~i~etd~~~I~~~  134 (141)
T PF01217_consen   78 LLLLEFLHRLVEVLDDYFG-NVSEKDILENFDLVYLILDEIIDGGIILETDPNVILKR  134 (141)
T ss_dssp             HHHHHHHHHHHHHHHHHHS-S-SHHHHHHTHHHHHHHHHHHEETTEES--THHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhhhc-cccHHHHHHCHHHHHHHHHHHHhCCEEEECCHHHHHHH
Confidence            9999999999999999999 89999999999999999999999999999999999875

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

Probab=100.00  E-value=6.3e-39  Score=231.27  Aligned_cols=134  Identities=22%  Similarity=0.349  Sum_probs=126.7

Q ss_pred             ceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecCCccH
Q 032231            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (145)
Q Consensus         6 ~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNE   85 (145)
                      ||++++++|++|++|++|||+|.  +..+|.+..+++++.+.+|+++ ++++..+.+.++||||||+|||+++.+.++||
T Consensus         1 ~i~~vli~nrqgk~RL~K~yt~~--~~~e~~kli~~i~~lIs~R~~k-e~N~~e~k~~kiVYrrYA~LyF~f~Vd~~dnE   77 (152)
T COG5030           1 MIKFVLIFNRQGKPRLVKWYTPV--SDPEQAKLIADIYELISARKPK-ESNFIEGKNEKIVYRRYATLYFVFGVDNDDNE   77 (152)
T ss_pred             CeEEEEEEcCCCceeeeEeeccC--CcHHHHHHHHHHHHHHHcCCch-hcccccccCcEEEeeecCcEEEEEEEcCCCCc
Confidence            79999999999999999999876  4458888999999999988765 78999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHHHHHhcCcEEeeechhhhccc
Q 032231           86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLINF  143 (145)
Q Consensus        86 l~l~e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lilDEiid~G~i~et~~~~il~~  143 (145)
                      ++++++||.|||+||++|| +|||+|+++||.++|.+|||++.+|.++|+|++.++++
T Consensus        78 l~iL~lIh~FVE~lDr~Fg-nVCELdlIFNF~kv~~ILdE~i~gG~i~Es~~~~vl~~  134 (152)
T COG5030          78 LIILELIHNFVEILDRFFG-NVCELDLIFNFQKVYAILDEMILGGEIIESSKNEVLEH  134 (152)
T ss_pred             chHHHHHHHHHHHHHHHhc-cceeeEeEeeHHHHHHHHHHHHhCCeeeecCHHHHHHH
Confidence            9999999999999999999 89999999999999999999999999999999999854

>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.5e-35  Score=213.92  Aligned_cols=133  Identities=22%  Similarity=0.335  Sum_probs=121.5

Q ss_pred             ceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceee----ec--CeEEEEEEeCcEEEEEEe
Q 032231            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAM----LE--GNVIVYKFVQDLHFFVTG   79 (145)
Q Consensus         6 ~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~----~~--~~~ivy~~~~dl~~~~v~   79 (145)
                      ||+|++|+|.+||+|++|||+|.  +++.|+++.+++|....+|+. +.++++.    ++  +.+++||+|+.|||+.+.
T Consensus         1 MI~AvlifNn~gkPRL~KFY~p~--~~~~Qq~lir~vf~lvs~R~~-n~~nFLe~~~l~g~~d~rlIYrhYATLYFvfvv   77 (182)
T KOG0936|consen    1 MIKAVLIFNNKGKPRLVKFYTPV--DEEKQQQLIREVFHLVSKRPD-NVCNFLEGNSLIGGSDNRLIYRHYATLYFVFVV   77 (182)
T ss_pred             CeeEEEEecCCCCcceeeecCcC--ChHHHHHHHHHHHHHHHcCCc-hHhhhhccccccCCccceeehheeeeEEEEEEE
Confidence            89999999999999999999986  567999999999999998863 2344432    33  799999999999999999


Q ss_pred             cCCccHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHHHHHhcCcEEeeechhhhcc
Q 032231           80 GEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLIN  142 (145)
Q Consensus        80 ~~~eNEl~l~e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lilDEiid~G~i~et~~~~il~  142 (145)
                      |++||||+++++|+.|||+||++|. +|||+|+++||++++.+|+|++.+|.++|||.+.|+.
T Consensus        78 D~sEsEL~iLDLIQvfVEtLDkCF~-nVcELDliF~~~k~h~iL~EiV~GGmVlETn~neIv~  139 (182)
T KOG0936|consen   78 DSSESELGILDLIQVFVETLDKCFE-NVCELDLIFNWQKVHAILAEIVMGGMVLETNMNEIVA  139 (182)
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHHH-hhhhhhheeeHHHHHHHHHHHHhCCeEEeccHHHHHH
Confidence            9999999999999999999999998 8999999999999999999999999999999988863

>KOG0934 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.2e-36  Score=215.64  Aligned_cols=132  Identities=19%  Similarity=0.295  Sum_probs=124.6

Q ss_pred             ceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecCCccH
Q 032231            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (145)
Q Consensus         6 ~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNE   85 (145)
                      ||+++++.++|||.|++|||.+.  +.++|.+.++.+.+.+.+++++ .++++.++++++|||||++|+|+++.+.++||
T Consensus         1 mi~f~LlvsrQGk~rL~k~y~~~--~~~er~~i~re~i~~~Lar~pk-~csfie~kd~kvVyrryasl~f~~~v~~~dNE   77 (145)
T KOG0934|consen    1 MIKFFLLVSRQGKTRLQKWYEAL--SIKERKKIERELIKSVLARKPK-MCSFIEYKDEKVVYRRYASLFFCVGVEDNDNE   77 (145)
T ss_pred             CeEEEEEEeccCceehhHHHhhh--cHHHHHHHHHHHHHHHHhCCcc-cccchhccCceehhhhhhhEEEEEEEecCCch
Confidence            79999999999999999999986  5579999999999999988765 68899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHHHHHhcCcEEeeechhhhc
Q 032231           86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLI  141 (145)
Q Consensus        86 l~l~e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lilDEiid~G~i~et~~~~il  141 (145)
                      |+++|+||.+||+||+||| +|||+|+++||+++|.+|||++.+|.++|++++..+
T Consensus        78 L~~LE~IH~~vE~lDkYFg-~VCELDiiFNfekay~ILde~~~~g~~~e~~k~~~~  132 (145)
T KOG0934|consen   78 LAILEFIHNYVELLDKYFG-SVCELDIIFNFEKAYFILDEFLLGGEIQETSKNDVL  132 (145)
T ss_pred             hhHHHHHHHHHHHHHHHhc-cceeeEEEEehHhHHHHHHHHhcCcchHhhhcccHH
Confidence            9999999999999999999 899999999999999999999999999999887654

>KOG0935 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.3e-35  Score=206.99  Aligned_cols=135  Identities=18%  Similarity=0.201  Sum_probs=123.1

Q ss_pred             ceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecCCccH
Q 032231            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (145)
Q Consensus         6 ~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNE   85 (145)
                      ||++|++.|++|++|++|||-+.  +..++++.+.++++....++++-.+.+......++++|+|++|||+++.|..+||
T Consensus         1 mi~FILiqNr~Gk~RLak~yv~~--dd~ek~~~~~~vh~lvs~Rd~K~~~~~~~~~~~~~~~rryagLyf~~~vd~tDne   78 (143)
T KOG0935|consen    1 MIRFILIQNRAGKTRLAKWYVQF--DDDEKQKLIEEVHALVTVRDAKHTNFVEFRNFKIIYRRRYAGLYFCICVDVTDNE   78 (143)
T ss_pred             CeEEEEEEccccceeheeeeecc--CchHHHHHHHHHHHHHhhccchhhhheeeeeceEEEEEeeCCEEEEEEEecCCch
Confidence            79999999999999999999765  3347788999999999988877556666666677777799999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHHHHHhcCcEEeeechhhhccc
Q 032231           86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLINF  143 (145)
Q Consensus        86 l~l~e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lilDEiid~G~i~et~~~~il~~  143 (145)
                      ++.++-||.|||+|+.+|+ ||||+|+++||.+||.++|||+.+|.|+|||++.+|+|
T Consensus        79 layLe~IHlFVEvLd~fF~-NVCELDlvFNFyKVy~i~DEm~l~GEi~Etsk~~vler  135 (143)
T KOG0935|consen   79 LAYLEHIHLFVEVLDEFFH-NVCELDLVFNFYKVYTIVDEMFLAGEIRETSKTKVLER  135 (143)
T ss_pred             HHHHHHHHHHHHHHHHHhc-cccceeeeeeeeeHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence            9999999999999999999 89999999999999999999999999999999999986

>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=5.1e-29  Score=183.22  Aligned_cols=137  Identities=27%  Similarity=0.407  Sum_probs=129.3

Q ss_pred             CccceeEEEEEcCCCCEEEEecCCCCC---------CChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcE
Q 032231            3 TCPSIKNILLLDSEGKRVAVKYYSNDW---------PTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDL   73 (145)
Q Consensus         3 ~~~~I~~i~iln~~G~~~~~kyY~~~~---------~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl   73 (145)
                      |++.|+|++|+|++|+|++.|||.|++         .+.++++.||+++++|+.+.    +++|+.+++..++|+++-|+
T Consensus         4 sLy~v~a~LilDsqGeriy~kyy~pph~~eg~~~vFnsvkkekefek~l~eKt~k~----~~~Il~f~d~lV~~k~~~dv   79 (187)
T COG5541           4 SLYDVEALLILDSQGERIYRKYYQPPHRSEGHQLVFNSVKKEKEFEKKLAEKTAKD----RESILMFYDRLVMCKRLDDV   79 (187)
T ss_pred             chheeeeeEEecCCccchhhhhcCCcccccccchhhcchhHHHHHHHHHHHHhhcC----ccceeeEcceeeeeeeehhE
Confidence            589999999999999999999999875         33468999999999999976    46999999999999999999


Q ss_pred             EEEEEecCCccHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHHHHHhcCcEEeeechhhhccc
Q 032231           74 HFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLINF  143 (145)
Q Consensus        74 ~~~~v~~~~eNEl~l~e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lilDEiid~G~i~et~~~~il~~  143 (145)
                      .+++++.-+|||.++.+.+..+..+|..+++...+++.+.+|||.+.+++||.+|+|+|+||+++.|.+|
T Consensus        80 ~~yiv~~meeNE~~l~q~f~~ir~Al~li~k~~~dkr~v~enYDqivl~vdEtid~Gvilet~s~~ia~r  149 (187)
T COG5541          80 LLYIVSPMEENEPFLGQVFDEIRAALILIVKTPTDKRNVWENYDQIVLLVDETIDEGVILETKSDEIADR  149 (187)
T ss_pred             EEEEecccccccHHHHHHHHHHHHHHHHHHcCCcchhhHHhhhceEEEeeehhcccceEeecChHHHHHh
Confidence            9999999999999999999999999999999888899999999999999999999999999999999876

>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.2e-21  Score=159.63  Aligned_cols=129  Identities=14%  Similarity=0.150  Sum_probs=119.9

Q ss_pred             ceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecCCccH
Q 032231            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (145)
Q Consensus         6 ~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNE   85 (145)
                      ||+|++|+|..|++++.|.|+.+.... .-+.|+-++.+...-     .+|+..+++++++|.+..+||+++++.+|.|-
T Consensus         1 misglfi~n~rGevlink~fr~dlkrs-~~diFRv~vi~n~d~-----r~PV~~igsttf~~~r~~nl~lvaitksN~Nv   74 (446)
T KOG0938|consen    1 MISGLFIYNLRGEVLINKTFRDDLKRS-IVDIFRVQVINNLDV-----RSPVLTIGSTTFHHIRSSNLWLVAITKSNANV   74 (446)
T ss_pred             CcceEEEEeccCcEEEehhhhhhhhhh-HHHHHHHhhhhcccc-----CCCeeEecceeEEEEeeccEEEEEEecCCCch
Confidence            799999999999999999999876443 778999999887443     37999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHHHHHhcCcEEeeechhhhc
Q 032231           86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLI  141 (145)
Q Consensus        86 l~l~e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lilDEiid~G~i~et~~~~il  141 (145)
                      .+++|++..+.+++.+||| ..+|+.+.+||..+|++||||+|.||||+|+++.+.
T Consensus        75 a~v~eFl~kl~avm~aYfg-k~~Eeaiknnf~lI~ElLDemld~G~pqnte~~al~  129 (446)
T KOG0938|consen   75 AAVFEFLYKLDAVMNAYFG-KDREEAIKNNFVLIYELLDEMLDFGIPQNTEPNALK  129 (446)
T ss_pred             hhHHHHHHHHHHHHHHHhc-ccchhhhhhceEeHHHHHHHHHhcCCCccCChhHHH
Confidence            9999999999999999999 799999999999999999999999999999999864

>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=6.5e-17  Score=135.56  Aligned_cols=130  Identities=20%  Similarity=0.324  Sum_probs=116.5

Q ss_pred             eeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecCCccHH
Q 032231            7 IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENEL   86 (145)
Q Consensus         7 I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNEl   86 (145)
                      ++|++++|.+|+++++|-|+.+.+ ...-.+|-+.++.+....   ...|++.++|..++|.+++++|+++++..|.|..
T Consensus         1 ~sa~fild~~G~~lisr~yr~dv~-~s~~~~F~~~l~~~e~~~---~~~p~l~~~g~~~~~ik~s~lylv~~~~~n~~a~   76 (424)
T KOG0937|consen    1 ASAVFILDHKGEVLISRDYRGDVP-MSSTEKFFRKLFEKEEGD---ESPPFLVHDGSRFIHIKHSNLYLVAGTRPNVSAA   76 (424)
T ss_pred             CceEEEEcCCCcEeEeecccccCC-hhhhhhHHHHHhhhcccC---CCCCeEEeCCceEEEEeecceEEEEEeccCCCHH
Confidence            478999999999999999998864 347788887777765222   2468999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHHHHHhcCcEEeeechhhhc
Q 032231           87 ILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLI  141 (145)
Q Consensus        87 ~l~e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lilDEiid~G~i~et~~~~il  141 (145)
                      .++++++++++++..||+ .+.|..+.+||..+|.+|||++|.|++|.|+++.+-
T Consensus        77 ~v~~~l~~~~~v~~~y~~-~l~e~si~~n~vlvyElLde~mDFGypQ~t~s~iL~  130 (424)
T KOG0937|consen   77 LVLSFLYAVADVFGDYLS-ELEEESIRDNFVLVYELLDEVMDFGYPQTTDSEILK  130 (424)
T ss_pred             HHHHHHHHHHHHHHHHhc-cCCccceecchHHHHHHHHHHhccCCcccchHHHHH
Confidence            999999999999999999 899999999999999999999999999999887753

>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=7.1e-13  Score=109.21  Aligned_cols=130  Identities=14%  Similarity=0.215  Sum_probs=95.0

Q ss_pred             ceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCccc-ccceeeecCeEEEEEEe-CcEEEEEEecCCc
Q 032231            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNART-EAEIAMLEGNVIVYKFV-QDLHFFVTGGEDE   83 (145)
Q Consensus         6 ~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~-~~~i~~~~~~~ivy~~~-~dl~~~~v~~~~e   83 (145)
                      ||+++++.|.+|+.++.|-.+...    .-+..+...++.-.+.. +. .++....-.+...+--+ .+++|++++..+-
T Consensus         1 mi~siflidtsg~l~lek~~~g~t----~~rsic~~f~e~~~~~~-~~e~~ppvi~~p~hylfsv~~~~i~~~~~st~e~   75 (418)
T KOG2740|consen    1 MILSIFLIDTSGDLLLEKHLKGST----VVRSICDYFFEDQSSDD-DLEHVPPVISTPHHYLFSVYRDLIFFCAVSTVET   75 (418)
T ss_pred             CeeEEEEEcCCchhhhhHhhCCce----eeeehHHHHHHhhhhcc-ccccCCceecCCceeeeeeeccCcEEEEEEeccC
Confidence            799999999999999999877421    11222333333222111 11 23333333344444444 4567777777777


Q ss_pred             cHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHHHHHhcCcEEeeechhhhc
Q 032231           84 NELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLI  141 (145)
Q Consensus        84 NEl~l~e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lilDEiid~G~i~et~~~~il  141 (145)
                      -.|.+.|+|++++++|..||| ..++..+.+|++.||++||||+|+|++..|++++|-
T Consensus        76 pPL~~iefL~rv~dv~~eyFg-~~s~~~Ik~N~~vv~ell~emiDnGfpl~tE~NiLk  132 (418)
T KOG2740|consen   76 PPLMVIEFLHRVVDVLLEYFG-GLSESKIKDNVVVVYELLDEMIDNGFPLVTEPNILK  132 (418)
T ss_pred             CChhHHHHHHHHHHHHHHHhc-ccCHhHhhcceeeHHHHHHHHHHcCCCcccChhHHH
Confidence            899999999999999999999 699999999999999999999999999999997653

>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=1.1e-05  Score=68.64  Aligned_cols=126  Identities=18%  Similarity=0.221  Sum_probs=104.3

Q ss_pred             ceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHH--HHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecCCc
Q 032231            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVF--TKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDE   83 (145)
Q Consensus         6 ~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~--~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~e   83 (145)
                      ++-|..+.+++||.+++|-|...     .|.+.|.-+-  .+.-+.  ..+.-++.-+..++||+..-.+|+++++..+.
T Consensus         2 vvlaa~i~t~~Gk~ivsRqf~~M-----sr~RIEgLl~aFpkLv~~--~~qhT~vEt~~VRYVYqP~d~lY~vLITtk~S   74 (512)
T KOG2635|consen    2 VVLAASINTKTGKAIVSRQFREM-----SRSRIEGLLAAFPKLVSA--GKQHTFVETDSVRYVYQPLDNLYIVLITTKQS   74 (512)
T ss_pred             eEEEEEEeecCCceeeehHhHhh-----hHHHHHHHHHHhHHhhcc--CCCccEEecccEEEEEEecccEEEEEEecccc
Confidence            45678888999999999998843     4556665443  333322  22457888999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHHHHHhcCcEEeeechhh
Q 032231           84 NELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFIL  139 (145)
Q Consensus        84 NEl~l~e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lilDEiid~G~i~et~~~~  139 (145)
                      |=+==++.|+.|..+...|+. .++|+.|.+|-=.+...+||++-=||=.+.+...
T Consensus        75 NIleDl~TL~Lfskvipey~~-slde~eI~~~~FelifAFDEivsLGyre~v~laQ  129 (512)
T KOG2635|consen   75 NILEDLETLRLFSKVIPEYCS-SLDEKEILENAFELIFAFDEIVSLGYRENVNLAQ  129 (512)
T ss_pred             chhhHHHHHHHHHHhchhhhh-hhhHHHHHHhhhhhhhccchhhhhcccccccHHH
Confidence            999999999999999999999 8999999999989999999999999866655443

>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1

Probab=97.62  E-value=0.0041  Score=47.88  Aligned_cols=79  Identities=22%  Similarity=0.201  Sum_probs=69.6

Q ss_pred             cCeEEEEEEeCcEEEEEEecCCccHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHHHHHhcCcEEeeechhh
Q 032231           61 EGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFIL  139 (145)
Q Consensus        61 ~~~~ivy~~~~dl~~~~v~~~~eNEl~l~e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lilDEiid~G~i~et~~~~  139 (145)
                      ....++|+..+++.|.+|-+..||=++.-.+|+.++..|...++.-..-..++.+-|.+..+|+.++-.|-.+=.|...
T Consensus       102 ~~k~vvW~~v~~l~ftLVce~hEN~lLa~~~L~~~~~~l~~~~~~l~~~~e~l~k~d~i~aiL~~fLP~GQLLFlN~~~  180 (189)
T PF15001_consen  102 TPKIVVWLGVGSLCFTLVCEPHENRLLAENTLRLFIRHLLEHLKILSQPSEVLLKSDRILAILHRFLPHGQLLFLNHRF  180 (189)
T ss_pred             CCcEEEeeccCCEEEEEEecCchhHHHHHHHHHHHHHHHHHHHHHhCcHHHhhhhHHHHHHHHHHhCCCCcEEEEcHHH
Confidence            3578999999999999999999999999999999999998888633334778889999999999999999988777654

>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.34  E-value=0.0038  Score=44.69  Aligned_cols=99  Identities=12%  Similarity=0.160  Sum_probs=68.4

Q ss_pred             CccceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhh---cCC-cccccceeeecCeEEEEEEeCcEEEEEE
Q 032231            3 TCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQ---KTN-ARTEAEIAMLEGNVIVYKFVQDLHFFVT   78 (145)
Q Consensus         3 ~~~~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~---~~~-~~~~~~i~~~~~~~ivy~~~~dl~~~~v   78 (145)
                      +...+.+|+|.|++|=+++.=..+.. +....+.+|....-..+.   +-+ +++.+=+..|+++.++.-....+++.++
T Consensus        13 ~v~Gl~~I~itDrDGvpi~~v~~~~~-~~~~~~~~~~~tf~~a~~Q~~KL~lG~nk~ii~~Y~~~qvv~~~~~pl~it~i   91 (119)
T PF08923_consen   13 RVDGLQAIVITDRDGVPIAKVSSDSA-PESAMRPSLLSTFAMAIDQASKLGLGKNKSIIAYYDSYQVVQFNKLPLYITFI   91 (119)
T ss_dssp             GSTTEEEEEEEETTS-EEEEEE-TTS--GGGGSHHHHCCHHHHHHHHTTSSS-SEEEEEEEESSEEEEEEEETTEEEEEE
T ss_pred             ccCCeEEEEEECCCCcEEEEecCCCC-cchhhhhHHHHHHHHHhhcccccCCCCceEEEEEeCCEEEEEEeCCCeEEEEE
Confidence            45678999999999988777554432 444455555543222222   211 2333457789999999999999999999


Q ss_pred             ecCCccHHHHHHHHHHHHHHHHhh
Q 032231           79 GGEDENELILATVLQGFFDAVGLL  102 (145)
Q Consensus        79 ~~~~eNEl~l~e~l~~~ve~L~~~  102 (145)
                      ++++.|--+++.+-+.+...|..+
T Consensus        92 as~~aN~G~il~l~~~L~~~l~~l  115 (119)
T PF08923_consen   92 ASSNANTGLILSLEEELAPILNEL  115 (119)
T ss_dssp             EETTS-HHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCHHHHHHhHHHHHHHHHHH
Confidence            999999999999888888877654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.

>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain

Probab=94.87  E-value=0.68  Score=39.61  Aligned_cols=91  Identities=16%  Similarity=0.195  Sum_probs=60.9

Q ss_pred             eEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCccc-ccceeeecCeEEEEEEeCcEEEEEEecCCccHH
Q 032231            8 KNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNART-EAEIAMLEGNVIVYKFVQDLHFFVTGGEDENEL   86 (145)
Q Consensus         8 ~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~-~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNEl   86 (145)
                      +-++|+...||++++|| ..    ++.-..|..-+.+..+-..... .-..+.-++.++||..-+-|+++++++.+|.+-
T Consensus        12 kh~fIlS~AGKPIysr~-G~----e~~l~~~~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~   86 (415)
T PF03164_consen   12 KHFFILSSAGKPIYSRY-GD----EDKLSSLMGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESES   86 (415)
T ss_pred             CeEEEECCCCceeEEec-CC----hHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHH
Confidence            45889999999999998 22    2233444443333333111110 112345789999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 032231           87 ILATVLQGFFDAVGLLL  103 (145)
Q Consensus        87 ~l~e~l~~~ve~L~~~~  103 (145)
                      .+..-|+.+...+-.++
T Consensus        87 ~l~~qL~~ly~qils~l  103 (415)
T PF03164_consen   87 QLRKQLDYLYSQILSIL  103 (415)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            88777776665554433

In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].

>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D

Probab=87.52  E-value=5.9  Score=25.69  Aligned_cols=63  Identities=5%  Similarity=0.027  Sum_probs=49.5

Q ss_pred             HHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecCCccHHHHHHHHHHHHHHHHhhhc
Q 032231           40 KAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLR  104 (145)
Q Consensus        40 ~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNEl~l~e~l~~~ve~L~~~~~  104 (145)
                      +++.+++...+.  ....+..+++.+-|..-+++.++++++.+...-..+.+|+.+.+-+..-++
T Consensus         3 ~~il~~i~~~~~--~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~   65 (83)
T PF13774_consen    3 RKILKRIPPNGN--SKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYG   65 (83)
T ss_dssp             HHHHHTS-TTSE--SEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHhcCCCCC--CeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcC
Confidence            455555553220  125677899999999999999999999999999999999999999988887

...

>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.57  E-value=16  Score=28.80  Aligned_cols=92  Identities=12%  Similarity=0.076  Sum_probs=67.1

Q ss_pred             CCCCEEEEecCCC--CCCChHHHHHHHHHHHHHhhcCCc-ccccceeeecCeEEEEEEeCcEEEEEEecCCccHHHHHHH
Q 032231           15 SEGKRVAVKYYSN--DWPTNSAKEAFEKAVFTKTQKTNA-RTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATV   91 (145)
Q Consensus        15 ~~G~~~~~kyY~~--~~~~~~~~~~fe~~i~~~~~~~~~-~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNEl~l~e~   91 (145)
                      ++|-++.+-+=+.  .-....+.++--|.++.+..+.++ |   .-..-+.+.+-|...++++.+++.+.+.---+.+..
T Consensus        11 ~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s~~r---~Sietg~f~fHfli~~~Vcylvicd~~yP~kLAF~Y   87 (216)
T KOG0862|consen   11 RDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQSPTR---CSIETGPFVFHFLIESGVCYLVICDKSYPRKLAFSY   87 (216)
T ss_pred             cCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCCCcc---cccccCCeEEEEEecCCEEEEEEecCCCcHHHHHHH
Confidence            5777766654211  111214555556788888776532 2   233456799999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCH
Q 032231           92 LQGFFDAVGLLLRGNVDK  109 (145)
Q Consensus        92 l~~~ve~L~~~~~~~v~e  109 (145)
                      |+.+.+-+.+.++.++..
T Consensus        88 LedL~~EF~~~~~~~~~~  105 (216)
T KOG0862|consen   88 LEDLAQEFDKSYGKNIIQ  105 (216)
T ss_pred             HHHHHHHHHHhcccccCC
Confidence            999999999999865544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	145
3tjz_C	153	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		2e-22
2hf6_A	149	Solution Structure Of Human Zeta-Cop Length = 149		7e-22

>pdb|3TJZ|C Chain C, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 153

Iteration: 1
 Score =  100 bits (250), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 77/125 (61%), Gaps = 4/125 (3%)
Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
           ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct: 12  TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67
Query: 66  VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXX 125
           VYK   DL+F+V G   ENEL+L TVL   FD++  +LR NV+K+               
Sbjct: 68  VYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127
Query: 126 XVDGG 130
            VDGG
Sbjct: 128 IVDGG 132

>pdb|2HF6|A Chain A, Solution Structure Of Human Zeta-Cop Length = 149

Iteration: 1
 Score = 99.4 bits (246), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
           ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +
Sbjct: 12  TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTV 67
Query: 66  VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXX 125
           VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+               
Sbjct: 68  VYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDE 127
Query: 126 XVDGG 130
            VDGG
Sbjct: 128 IVDGG 132

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	145
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	2e-38
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	5e-19
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	2e-15
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	4e-07
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	1e-06

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153

 Score =  126 bits (318), Expect = 2e-38
 Identities = 60/129 (46%), Positives = 89/129 (68%), Gaps = 4/129 (3%)

Query: 3   TCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEG 62
           +  ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG
Sbjct: 9   SLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKT----HRTDSEIALLEG 64

Query: 63  NVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLC 122
             +VYK   DL+F+V G   ENEL+L TVL   FD++  +LR NV+K+  LEN++ + L 
Sbjct: 65  LTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLA 124

Query: 123 LDEIVDGGY 131
           +DEIVDGG 
Sbjct: 125 VDEIVDGGV 133

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142

 Score = 76.9 bits (189), Expect = 5e-19
 Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 4/125 (3%)

Query: 7   IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIV 66
           I+ IL+ +  GK    K+Y      +  K+   + V       +A+            I+
Sbjct: 2   IRFILIQNRAGKTRLAKWY--MQFDDDEKQKLIEEVHAVVTVRDAK-HTNFVEFRNFKII 58

Query: 67  YKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEI 126
           Y+    L+F +    ++N L     +  F + +      NV + + + N   +   +DE+
Sbjct: 59  YRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYF-HNVCELDLVFNFYKVYTVVDEM 117

Query: 127 VDGGY 131
              G 
Sbjct: 118 FLAGE 122

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158

 Score = 67.8 bits (165), Expect = 2e-15
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 4/125 (3%)

Query: 7   IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIV 66
           ++ +LL   +GK    K+Y     ++  ++   + +         +            +V
Sbjct: 2   MRFMLLFSRQGKLRLQKWY--LATSDKERKKMVRELMQVVLARKPK-MCSFLEWRDLKVV 58

Query: 67  YKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEI 126
           YK    L+F       +NELI   ++  + + +     G+V + + + N +     LDE 
Sbjct: 59  YKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYF-GSVCELDIIFNFEKAYFILDEF 117

Query: 127 VDGGY 131
           + GG 
Sbjct: 118 LMGGD 122

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 423

 Score = 46.9 bits (110), Expect = 4e-07
 Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 5/138 (3%)

Query: 6   SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVI 65
           S   + +LD +GK +  + Y  D   +   E F   +  K ++        I    G   
Sbjct: 2   SASAVYVLDLKGKVLICRNYRGDVDMSEV-EHFMPILMEKEEEGMLSP---ILAHGGVRF 57

Query: 66  VYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDE 125
           ++    +L+   T  ++    ++ + L              ++++   +N  +I   LDE
Sbjct: 58  MWIKHNNLYLVATSKKNACVSLVFSFLYKVVQVFS-EYFKELEEESIRDNFVIIYELLDE 116

Query: 126 IVDGGYATCYSFILLINF 143
           ++D GY       +L  F
Sbjct: 117 LMDFGYPQTTDSKILQEF 134

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 6/125 (4%)

Query: 7   IKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIV 66
           I  + + + +G+ +  + Y +D   N+  +AF   V    Q    +  + +  +      
Sbjct: 2   IGGLFIYNHKGEVLISRVYRDDIGRNAV-DAFRVNVIHARQ----QVRSPVTNIARTSFF 56

Query: 67  YKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEI 126
           +    ++       ++ N  ++   L    D +     G + ++    N  LI   LDEI
Sbjct: 57  HVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVM-AAYFGKISEENIKNNFVLIYELLDEI 115

Query: 127 VDGGY 131
           +D GY
Sbjct: 116 LDFGY 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	100.0
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	100.0
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	100.0
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	99.98
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	99.97
3cpt_A	143	Mitogen-activated protein kinase kinase 1- interac	97.1
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	95.86
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	94.76
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	93.22
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	92.25
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	89.81
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	84.75
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	81.66

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A

Probab=100.00  E-value=1.8e-45  Score=272.63  Aligned_cols=138  Identities=43%  Similarity=0.707  Sum_probs=130.0

Q ss_pred             CCccceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecC
Q 032231            2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGE   81 (145)
Q Consensus         2 ~~~~~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~   81 (145)
                      .|++||+|++|+|++|++|++|||++++++.++|++||+.+++++.+    .++|++.+++++++||++++|||+++++.
T Consensus         8 ~sl~mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r----~~~~i~~~~~~~~vy~~~~~Lyfv~~~~~   83 (153)
T 3tjz_C            8 PSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHR----TDSEIALLEGLTVVYKSSIDLYFYVIGSS   83 (153)
T ss_dssp             CCSBCEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSS----CCCCEEEETTEEEEEEECSSCEEEEEEET
T ss_pred             ccHHHheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhC----CCCCEEEECCEEEEEEEECCEEEEEEEcC
Confidence            47999999999999999999999998766778899999999999853    24799999999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHHHHHhcCcEEeeechhhhccc
Q 032231           82 DENELILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLINF  143 (145)
Q Consensus        82 ~eNEl~l~e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lilDEiid~G~i~et~~~~il~~  143 (145)
                      ++||++++++||+++++|+.||++++||++|++||+++|++||||+|+|+||||+++.|+++
T Consensus        84 ~eNel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~  145 (153)
T 3tjz_C           84 YENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHR  145 (153)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHT
T ss_pred             CCChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHH
Confidence            99999999999999999999995589999999999999999999999999999999999875

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=100.00  E-value=2.8e-39  Score=240.20  Aligned_cols=134  Identities=17%  Similarity=0.251  Sum_probs=125.5

Q ss_pred             ceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecCCccH
Q 032231            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (145)
Q Consensus         6 ~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNE   85 (145)
                      ||+|++|+|++|++|++|||++.  +.+.|+++++.+++++.++++ ..+|++.+++++++|+++++|||+++++.++||
T Consensus         1 MI~~i~Il~~~Gk~~lsk~y~~~--~~~~~~~~~~~~~~~i~~~~~-~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Ne   77 (158)
T 1w63_Q            1 MMRFMLLFSRQGKLRLQKWYLAT--SDKERKKMVRELMQVVLARKP-KMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNE   77 (158)
T ss_dssp             CEEEEEEECSSSCEEEEEESSCC--CHHHHHHHHHHHHHHHHTSCS-SSCSEEEETTEEEEEEEETTEEEEEEECSSSCH
T ss_pred             CeEEEEEECCCCCEEEEEeCCCC--CHHHHHHHHHHHHHHHhccCC-CCCCeEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence            79999999999999999999986  556889999999999887643 258999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHHHHHhcCcEEeeechhhhccc
Q 032231           86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLINF  143 (145)
Q Consensus        86 l~l~e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lilDEiid~G~i~et~~~~il~~  143 (145)
                      ++++++||.++++|+.||| ++||++|++||+++|++||||+|+|+|+||+++.|.++
T Consensus        78 l~~le~L~~~vevl~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~  134 (158)
T 1w63_Q           78 LITLELIHRYVELLDKYFG-SVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKA  134 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHc-cCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHH
Confidence            9999999999999999998 79999999999999999999999999999999998753

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=100.00  E-value=6.7e-39  Score=234.10  Aligned_cols=134  Identities=18%  Similarity=0.251  Sum_probs=124.4

Q ss_pred             ceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecCCccH
Q 032231            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (145)
Q Consensus         6 ~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNE   85 (145)
                      ||+|++|+|++|++|++|||++.  +.+.++++++.++++..++++ ..+|++.+++++++|+++++|||+++++.++||
T Consensus         1 MI~~i~i~~~~Gk~~l~k~y~~~--~~~~~~~~~~~f~~~v~~~~~-~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~   77 (142)
T 2vgl_S            1 MIRFILIQNRAGKTRLAKWYMQF--DDDEKQKLIEEVHAVVTVRDA-KHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNN   77 (142)
T ss_dssp             CEEEEEEEETTSCEEEEEECSCC--CHHHHHHHHHHHHHHHHTCCT-TSCSEEEETTEEEEEEEETTEEEEEEECTTSCH
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCC--ChhhhHHHHHHHHHHHhcCCC-CCCCEEEECCEEEEEEEECCEEEEEEeCCCCCH
Confidence            79999999999999999999974  556889999999998886543 368999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHHHHHhcCcEEeeechhhhccc
Q 032231           86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLINF  143 (145)
Q Consensus        86 l~l~e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lilDEiid~G~i~et~~~~il~~  143 (145)
                      ++++++||.++++|+.||| ++||++|++||+++|++||||+|+|+|+||++..++++
T Consensus        78 l~~le~L~~~ve~l~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~  134 (142)
T 2vgl_S           78 LAYLEAIHNFVEVLNEYFH-NVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQ  134 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-SCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHH
Confidence            9999999999999999998 79999999999999999999999999999998887764

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M

Probab=99.98  E-value=8e-32  Score=226.96  Aligned_cols=131  Identities=18%  Similarity=0.256  Sum_probs=116.8

Q ss_pred             ceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecCCccH
Q 032231            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (145)
Q Consensus         6 ~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNE   85 (145)
                      ||+|++|+|++|++|++|||++..+ ....++|++.+..+..    +..+|++.+++++++|+++++|||+++++.++||
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~~~~-~~~~~~f~~~v~~~~~----~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~   75 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRDDIG-RNAVDAFRVNVIHARQ----QVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNA   75 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSSSCC-HHHHHHHHHHTTTCSS----CCCCSEEEETTEEEEEEEETTEEEEEEESSCCCH
T ss_pred             CeEEEEEECCCCCEEEEEecCCCCC-hhHHHHHHHHHhcccc----CCCCCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence            7999999999999999999998654 3355677666554321    1257999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHHHHHhcCcEEeeechhhhcc
Q 032231           86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLIN  142 (145)
Q Consensus        86 l~l~e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lilDEiid~G~i~et~~~~il~  142 (145)
                      ++++|+||.++++|+.||| ++||++|++||+++|++||||+|+|+|+||+++.|-+
T Consensus        76 l~~le~L~~~v~vl~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~  131 (435)
T 2vgl_M           76 AMVFEFLYKMCDVMAAYFG-KISEENIKNNFVLIYELLDEILDFGYPQNSETGALKT  131 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHS-SCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHHHh-ccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHH
Confidence            9999999999999999999 7999999999999999999999999999999997654

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.97  E-value=6.3e-32  Score=226.90  Aligned_cols=133  Identities=19%  Similarity=0.277  Sum_probs=121.3

Q ss_pred             ceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecCCccH
Q 032231            6 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENE   85 (145)
Q Consensus         6 ~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNE   85 (145)
                      ||+|++|+|++|+++++|||++..+.. ..++|++.+.++....   ..+|++.+++++++|+++++|||+++++.++||
T Consensus         2 MI~~i~I~~~~Gk~~l~k~y~~~~~~~-~~~~f~~~v~~~~~~~---~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~   77 (423)
T 1w63_M            2 SASAVYVLDLKGKVLICRNYRGDVDMS-EVEHFMPILMEKEEEG---MLSPILAHGGVRFMWIKHNNLYLVATSKKNACV   77 (423)
T ss_dssp             CCCEEEEEETTTEECSCBCCSCSCTTT-THHHHHHHHHHHHHTS---CCCSEEEETTEEEEEEEETTEEEEEEESSCCCT
T ss_pred             ceEEEEEECCCCCEEEEEecCCCCChH-HHHHHHHHHhhccccC---CCCCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence            899999999999999999999865543 5788999988765411   157999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCHHHHHHcHHHHHHHHHHHhcCcEEeeechhhhccc
Q 032231           86 LILATVLQGFFDAVGLLLRGNVDKKEALENLDLILLCLDEIVDGGYATCYSFILLINF  143 (145)
Q Consensus        86 l~l~e~l~~~ve~L~~~~~~~v~e~~i~~n~~~v~lilDEiid~G~i~et~~~~il~~  143 (145)
                      ++++++||.++++|+.||| ++||++|++||+++|++||||+|+|+|+||+++.|.++
T Consensus        78 l~~le~L~~~v~~l~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~  134 (423)
T 1w63_M           78 SLVFSFLYKVVQVFSEYFK-ELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEF  134 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHSS-CCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHh-hcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHh
Confidence            9999999999999999997 89999999999999999999999999999999988654

>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A

Probab=97.10  E-value=0.01  Score=42.67  Aligned_cols=99  Identities=13%  Similarity=0.141  Sum_probs=72.7

Q ss_pred             CccceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcC---C-cccccceeeecCeEEEEEEeCcEEEEEE
Q 032231            3 TCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKT---N-ARTEAEIAMLEGNVIVYKFVQDLHFFVT   78 (145)
Q Consensus         3 ~~~~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~---~-~~~~~~i~~~~~~~ivy~~~~dl~~~~v   78 (145)
                      +...+.+|+|.|++|-+++.-..+.. |..+-+..|....-..+.+.   + +++.+=+..|+++.+|.-...-+++.++
T Consensus        34 rv~Gl~aI~ItDrDGVpi~kv~~~~~-~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~I  112 (143)
T 3cpt_A           34 SVEGLHAIVVSDRDGVPVIKVANDNA-PEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFI  112 (143)
T ss_dssp             GSTTEEEEEEECTTSCEEEEEECTTS-CGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEE
T ss_pred             ccCCeEEEEEECCCCcEEEEecCCCC-chhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEE
Confidence            46778999999999999988887653 44455667766532222211   1 2333456789999999999999999999


Q ss_pred             ecCCccHHHHHHHHHHHHHHHHhh
Q 032231           79 GGEDENELILATVLQGFFDAVGLL  102 (145)
Q Consensus        79 ~~~~eNEl~l~e~l~~~ve~L~~~  102 (145)
                      ++++.|--+++.+=+.+...|..+
T Consensus       113 as~~aNtG~Il~Le~~L~p~l~~L  136 (143)
T 3cpt_A          113 ASSSANTGLIVSLEKELAPLFEEL  136 (143)
T ss_dssp             EETTSCHHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCchhHhhhHHHHHHHHHHH
Confidence            999999999998766666666544

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=95.86  E-value=0.34  Score=35.87  Aligned_cols=97  Identities=9%  Similarity=0.033  Sum_probs=67.4

Q ss_pred             ceeEEEEEcC-CCCEEEEecCCCCCC---ChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecC
Q 032231            6 SIKNILLLDS-EGKRVAVKYYSNDWP---TNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGE   81 (145)
Q Consensus         6 ~I~~i~iln~-~G~~~~~kyY~~~~~---~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~   81 (145)
                      ||...+|.-. +|- +|+.+++....   ....-+.+.+.+.+++...++  .--.+..+++.+-|..-.++.++++++.
T Consensus         2 Mi~ya~IaR~~d~~-iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~--~r~s~~~~~y~fhy~~~~gl~~l~i~d~   78 (196)
T 2nut_C            2 MVLLTMIARVADGL-PLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSP--TRCTLEAGAMTFHYIIEQGVCYLVLCEA   78 (196)
T ss_dssp             CCCCEEEEETTTCC-EEEEECCCC-----CHHHHHHHHHHHHHHCCTTSC--SEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred             ceEEEEEEEcCCCc-EEEEeecccccccccHHHHHHHHHHHHHhcCCCCC--CeEEEEeCCEEEEEEeCCCeEEEEEEcC
Confidence            5776777644 454 55666653211   122345666777777654111  1134567899999999999999999999


Q ss_pred             CccHHHHHHHHHHHHHHHHhhhcC
Q 032231           82 DENELILATVLQGFFDAVGLLLRG  105 (145)
Q Consensus        82 ~eNEl~l~e~l~~~ve~L~~~~~~  105 (145)
                      +...-..+.+|..+.+-+..-++.
T Consensus        79 ~yp~r~af~fL~~i~~~F~~~~~~  102 (196)
T 2nut_C           79 AFPKKLAFAYLEDLHSEFDEQHGK  102 (196)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CcchHHHHHHHHHHHHHHHHhccc
Confidence            999999999999998888777663

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A

Probab=94.76  E-value=0.71  Score=32.62  Aligned_cols=99  Identities=8%  Similarity=-0.062  Sum_probs=64.9

Q ss_pred             ceeEEEEEcCCC--CEEEEecCCCC----CCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEE-EeCcEEEEEE
Q 032231            6 SIKNILLLDSEG--KRVAVKYYSND----WPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYK-FVQDLHFFVT   78 (145)
Q Consensus         6 ~I~~i~iln~~G--~~~~~kyY~~~----~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~-~~~dl~~~~v   78 (145)
                      -|-++.|+-..+  -++++..++-.    +... ..++|-..+-+.+..+-+.+.-.-...+++.+-|. +.+++.++++
T Consensus         6 kl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~-sv~ef~~~~ar~i~~r~~~~~R~sv~~~~y~fH~~~~~~gl~~l~i   84 (144)
T 3bw6_A            6 RIYYIGVFRSGGEKALELSEVKDLSQFGFFERS-SVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGVLI   84 (144)
T ss_dssp             CEEEEEEEECCSSSCEEEEEEECCTTSCTTTTT-HHHHHHHHHHHHHHHHCCTTEEEEEEETTEEEEEEECTTSEEEEEE
T ss_pred             EEEEEEEEecCCCCCeEeEeeecccccChhhhh-hHHHHHHHHHHHHHhhCCCCceEEEEeCCEEEEEEEecCCEEEEEE
Confidence            456665664322  56788877643    2222 23444444443333221111123456789999888 8899999999


Q ss_pred             ecCCccHHHHHHHHHHHHHHHHhhhcC
Q 032231           79 GGEDENELILATVLQGFFDAVGLLLRG  105 (145)
Q Consensus        79 ~~~~eNEl~l~e~l~~~ve~L~~~~~~  105 (145)
                      +|.+...-+.+.+|+.+.+-+.+-++.
T Consensus        85 ~D~~yp~rvAF~~L~~i~~eF~~~y~~  111 (144)
T 3bw6_A           85 TDKEYPVRPAYTLLNKILDEYLVAHPK  111 (144)
T ss_dssp             EETTSCHHHHHHHHHHHHHHHHHHSCG
T ss_pred             ECCCCChhHHHHHHHHHHHHHHHHccc
Confidence            999999999999999999888777763

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A

Probab=93.22  E-value=0.78  Score=33.48  Aligned_cols=83  Identities=8%  Similarity=0.019  Sum_probs=64.2

Q ss_pred             CCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecCCccHHHHHHHHHHH
Q 032231           16 EGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGF   95 (145)
Q Consensus        16 ~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNEl~l~e~l~~~   95 (145)
                      .|.++++.|-...    ...+..-+.+.+++...++   -..+..+++.+-|..-+++.++++.|.+..--..+.+|..+
T Consensus        53 RG~~VLae~t~~~----gnf~~iak~ll~kl~~~~~---r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI  125 (169)
T 2vx8_A           53 RGTTILAKHAWCG----GNFLEVTEQILAKIPSENN---KLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEV  125 (169)
T ss_dssp             ETTEEEEEEESSC----BSHHHHHHHHHTTSCSSCE---EEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHH
T ss_pred             cCCEEEEEeccCC----CCHHHHHHHHHhhCCCCCC---ceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHH
Confidence            4778888874421    1344556777777664332   24567899999999999999999999999999999999999


Q ss_pred             HHHHHhhhcC
Q 032231           96 FDAVGLLLRG  105 (145)
Q Consensus        96 ve~L~~~~~~  105 (145)
                      .+-+..-++.
T Consensus       126 ~~eF~~~y~~  135 (169)
T 2vx8_A          126 KKRFQTTYGS  135 (169)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHhhh
Confidence            9999888874

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=92.25  E-value=1.8  Score=31.79  Aligned_cols=82  Identities=9%  Similarity=0.018  Sum_probs=60.8

Q ss_pred             CCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecCCccHHHHHHHHHHH
Q 032231           16 EGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGF   95 (145)
Q Consensus        16 ~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNEl~l~e~l~~~   95 (145)
                      .|.++++.|=...    ..-..+-+++..++...++   --...++++.+-|..-+++.++++++.+...-..+.+|+.+
T Consensus        11 rg~~iLae~t~~~----gnf~~ia~~iL~kip~~~~---k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i   83 (189)
T 4b93_A           11 RGTTILAKHAWCG----GNFLEVTEQILAKIPSENN---KLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEV   83 (189)
T ss_dssp             ETTEEEEEEESSE----ECHHHHHHHHHTTCCSSSE---EEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHH
T ss_pred             eCCEEEEeCCCCC----CCHHHHHHHHHHhCCCCCC---eEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHH
Confidence            4899999973221    1233455566655543221   13567899999999999999999999999999999999999


Q ss_pred             HHHHHhhhc
Q 032231           96 FDAVGLLLR  104 (145)
Q Consensus        96 ve~L~~~~~  104 (145)
                      .+-+..-++
T Consensus        84 ~~eF~~~~~   92 (189)
T 4b93_A           84 KKRFQTTYG   92 (189)
T ss_dssp             HHHHHHHHG
T ss_pred             HHHHHhhcc
Confidence            888877665

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}

Probab=89.81  E-value=2.9  Score=30.52  Aligned_cols=83  Identities=8%  Similarity=0.011  Sum_probs=61.9

Q ss_pred             CCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEEEEEeCcEEEEEEecCCccHHHHHHHHHHH
Q 032231           16 EGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGF   95 (145)
Q Consensus        16 ~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNEl~l~e~l~~~   95 (145)
                      .|.++++.|=... .   .-...-+++.+++...+.   --....+++.+-|-.-+++.+++++|.+..--..+.+|..+
T Consensus        63 rg~tiLAE~t~~~-g---nf~~va~~iL~kip~~~~---r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI  135 (173)
T 4afi_A           63 RGTTILAKHAWCG-G---NFLEVTEQILAKIPSENN---KLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEV  135 (173)
T ss_dssp             ETTEEEEEEESSC-C---CHHHHHHHHHTTSCSSSE---EEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEccCCC-C---CHHHHHHHHHHhCCCCCC---eEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHH
Confidence            4889999875432 1   223455555555543221   13556899999999999999999999999999999999999


Q ss_pred             HHHHHhhhcC
Q 032231           96 FDAVGLLLRG  105 (145)
Q Consensus        96 ve~L~~~~~~  105 (145)
                      .+-+.+-++.
T Consensus       136 ~~eF~~~yg~  145 (173)
T 4afi_A          136 KKRFQTTYGS  145 (173)
T ss_dssp             HHHHHHHHGG
T ss_pred             HHHHHHHhch
Confidence            9998887773

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=84.75  E-value=10  Score=28.11  Aligned_cols=98  Identities=10%  Similarity=0.053  Sum_probs=63.4

Q ss_pred             eeEEEEEcCCCC--EEEEecCCCC-C--CChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEE-EEEeCcEEEEEEec
Q 032231            7 IKNILLLDSEGK--RVAVKYYSND-W--PTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIV-YKFVQDLHFFVTGG   80 (145)
Q Consensus         7 I~~i~iln~~G~--~~~~kyY~~~-~--~~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~iv-y~~~~dl~~~~v~~   80 (145)
                      |-++.++...|.  .+++.-|+-. +  -.-..-++|..-.-+.+.++.+++.--.+..+++.+- |.+-+++.++++++
T Consensus         4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~~r~s~~~~~y~fH~y~~~~gl~yl~itd   83 (199)
T 3kyq_A            4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGVVIAD   83 (199)
T ss_dssp             EEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTTEEEEEECSSEEEEEEECTTSEEEEEEEE
T ss_pred             EEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCCCeEEEEeCCEEEEEEEecCCEEEEEEEC
Confidence            556677754443  3456666532 1  1123444454433333333322212234567888887 89999999999999


Q ss_pred             CCccHHHHHHHHHHHHHHHHhhhc
Q 032231           81 EDENELILATVLQGFFDAVGLLLR  104 (145)
Q Consensus        81 ~~eNEl~l~e~l~~~ve~L~~~~~  104 (145)
                      .+...-..+.+|+.+.+-+..-++
T Consensus        84 ~~yp~r~AF~fL~ei~~eF~~~~~  107 (199)
T 3kyq_A           84 SEYPSRVAFTLLEKVLDEFSKQVD  107 (199)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999888877775

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=81.66  E-value=11  Score=26.36  Aligned_cols=94  Identities=10%  Similarity=0.100  Sum_probs=55.5

Q ss_pred             ceeEEEEEcCCCCEEEEecCCCCC---CC-hHHHHHHHHHHHH---HhhcCCcc-ccc--ceeeecCeEE-EEEEeCcEE
Q 032231            6 SIKNILLLDSEGKRVAVKYYSNDW---PT-NSAKEAFEKAVFT---KTQKTNAR-TEA--EIAMLEGNVI-VYKFVQDLH   74 (145)
Q Consensus         6 ~I~~i~iln~~G~~~~~kyY~~~~---~~-~~~~~~fe~~i~~---~~~~~~~~-~~~--~i~~~~~~~i-vy~~~~dl~   74 (145)
                      +|.++.|+|++|..++.|=|.+..   .+ .++.+-.-.-++.   -..+.++. +..  ..+..+++++ .|..-.++-
T Consensus         2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiK   81 (145)
T 2j3t_C            2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIK   81 (145)
T ss_dssp             CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCE
T ss_pred             eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCE
Confidence            578999999999999999886531   11 2223222222221   11121111 111  2334556644 445567899


Q ss_pred             EEEEecCCccHHHHHHHHHHHH-HHHHh
Q 032231           75 FFVTGGEDENELILATVLQGFF-DAVGL  101 (145)
Q Consensus        75 ~~~v~~~~eNEl~l~e~l~~~v-e~L~~  101 (145)
                      |+++++..+++  +-++++.+. +....
T Consensus        82 Fvl~td~~~~~--i~~~l~~iy~~lYv~  107 (145)
T 2j3t_C           82 VVMNTDLGVGP--IRDVLHHIYSALYVE  107 (145)
T ss_dssp             EEEEECTTCCC--CHHHHHHHHHTTHHH
T ss_pred             EEEEecCCcch--HHHHHHHHHHHHHHH
Confidence            99999987765  557777777 56655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	145
d2vgls_	142	d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem	7e-21
d2vglm2	141	d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass	6e-19

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	145
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	100.0
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	100.0
d3cpta1	116	MEK binding partner 1, MP1 {Human (Homo sapiens) [	97.45
d1ioua_	140	Synaptobrevin homolog 1 ykt6 {Baker's yeast (Sacch	87.63
d1vetb_	118	Late endosomal/lysosomal Mp1 interacting protein p	86.09

>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: MEK binding partner 1, MP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.0013  Score=44.19  Aligned_cols=99  Identities=11%  Similarity=0.111  Sum_probs=73.1

Q ss_pred             CCccceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhhcCC----cccccceeeecCeEEEEEEeCcEEEEE
Q 032231            2 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTN----ARTEAEIAMLEGNVIVYKFVQDLHFFV   77 (145)
Q Consensus         2 ~~~~~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~~~~----~~~~~~i~~~~~~~ivy~~~~dl~~~~   77 (145)
                      .+...++||+|.|++|=++++=.-. ..|....+.+|....-..+.+.+    +++.+=+..|+++.+|.-....+++.+
T Consensus        12 ~~v~Gl~~I~iTDrDGVpv~~v~~~-~~p~~~~~~~~lstf~~a~dq~sKLglg~~ksii~~Y~~~qvv~~~~~pl~vt~   90 (116)
T d3cpta1          12 PSVEGLHAIVVSDRDGVPVIKVAND-NAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSF   90 (116)
T ss_dssp             GGSTTEEEEEEECTTSCEEEEEECT-TSCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEE
T ss_pred             hhcCCeEEEEEEcCCCcEEEEecCC-CChhhhcchHHHHHHHHHHHhhcccCCCCCcEEEEEecCeEEEEEecCceEEEE
Confidence            4567899999999999988776544 33554556666665333322111    233345778999999999999999999


Q ss_pred             EecCCccHHHHHHHHHHHHHHHHh
Q 032231           78 TGGEDENELILATVLQGFFDAVGL  101 (145)
Q Consensus        78 v~~~~eNEl~l~e~l~~~ve~L~~  101 (145)
                      +++++.|--+++.+-+.+-..|..
T Consensus        91 ia~~~aNtG~Il~l~~~l~~~L~~  114 (116)
T d3cpta1          91 IASSSANTGLIVSLEKELAPLFEE  114 (116)
T ss_dssp             EEETTSCHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCChHHHHHHHHHHHHHHhh
Confidence            999999999999988777776653

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.63  E-value=2.6  Score=27.83  Aligned_cols=98  Identities=10%  Similarity=-0.037  Sum_probs=61.0

Q ss_pred             eeEEEEEc--CCCCEEEEecCCCC-CC--ChHHHHHHHHHHHHHhhcCCcccccceeeecCeEEE-EEEeCcEEEEEEec
Q 032231            7 IKNILLLD--SEGKRVAVKYYSND-WP--TNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIV-YKFVQDLHFFVTGG   80 (145)
Q Consensus         7 I~~i~iln--~~G~~~~~kyY~~~-~~--~~~~~~~fe~~i~~~~~~~~~~~~~~i~~~~~~~iv-y~~~~dl~~~~v~~   80 (145)
                      +-++.++.  .+.-+.++.-|+-. +.  .-..-++|.+-+-+.+.++.+++.-..+..+++.+- |.+..+|.+++++|
T Consensus         3 l~~~~v~~~~~~~~~~L~~a~Dlssf~ffqR~svkE~~~f~sr~i~~Rt~~g~r~sv~~~~y~~h~yv~~~gl~~l~i~d   82 (140)
T d1ioua_           3 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGERQSIEEGNYIGHVYARSEGICGVLITD   82 (140)
T ss_dssp             CCEEEEEEEETTEEEEEEEEECCSSCCTTHHHHHHHHHHHHHHHHHHHCCSSSEEEEEETTEEEEEECCSSSCEEEEEBC
T ss_pred             EEEEEEEEcCCCCcEEEeeeccccccceeehHhHHHHHHHHHHHHhhcCCCCceEEEEcCCeEEEEEEeeCCEEEEEEEC
Confidence            44566664  34445667777632 11  112233344444444444333323345677887776 77888999999999


Q ss_pred             CCccHHHHHHHHHHHHHHHHhhhc
Q 032231           81 EDENELILATVLQGFFDAVGLLLR  104 (145)
Q Consensus        81 ~~eNEl~l~e~l~~~ve~L~~~~~  104 (145)
                      .+...-..+.+|+.+.+-+.+-++
T Consensus        83 ~~Yp~r~AF~~L~~i~~eF~~~~~  106 (140)
T d1ioua_          83 KQYPVRPAYTLLNKILDEYLVAHP  106 (140)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCcchHHHHHHHHHHHHHHHHHcC
Confidence            999999999999987776655543

>d1vetb_ d.110.7.1 (B:) Late endosomal/lysosomal Mp1 interacting protein p14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: Late endosomal/lysosomal Mp1 interacting protein p14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.09  E-value=2.9  Score=26.75  Aligned_cols=95  Identities=14%  Similarity=0.154  Sum_probs=63.6

Q ss_pred             ccceeEEEEEcCCCCEEEEecCCCCCCChHHHHHHHHHHHHHhh---cCC-cc--cccceeeecCeEEEEEEeCcEEEEE
Q 032231            4 CPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQ---KTN-AR--TEAEIAMLEGNVIVYKFVQDLHFFV   77 (145)
Q Consensus         4 ~~~I~~i~iln~~G~~~~~kyY~~~~~~~~~~~~fe~~i~~~~~---~~~-~~--~~~~i~~~~~~~ivy~~~~dl~~~~   77 (145)
                      .+.|.+.++++.+|-.+.+..-..  .+.+.-.+.-..++....   ++. ..  .+--++.+++-.++....++.++.+
T Consensus        16 t~GV~~avlvs~DGl~ia~~~~~~--~d~~~lAAi~a~~l~~~~~~a~~~~~~G~~~qviie~~~G~l~i~~~g~~~L~v   93 (118)
T d1vetb_          16 TGGVQSTLLLNNEGSLLAYSGYGD--TDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVANLLLCM   93 (118)
T ss_dssp             CTTEEEEEEECTTCCEEEEEECCS--SCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEEEEEEEETTEEEEE
T ss_pred             CCCeeEEEEECCCCCeeeecCCCc--cCHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCCEEEEEEcccCeEEE
Confidence            478999999999999997654332  234445566666665443   221 11  1122456776666666778999999


Q ss_pred             EecCCccHHHHHHHHHHHHHHHH
Q 032231           78 TGGEDENELILATVLQGFFDAVG  100 (145)
Q Consensus        78 v~~~~eNEl~l~e~l~~~ve~L~  100 (145)
                      +++++.|--.+.-=++..++-|+
T Consensus        94 la~~~~~lGll~~e~~~~~~~L~  116 (118)
T d1vetb_          94 YAKETVGFGMLKAKAQALVQYLE  116 (118)
T ss_dssp             EECTTSCHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCchHHHHHHHHHHHHhc
Confidence            99999998877777777776654