Citrus Sinensis ID: 032258

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MVRPSGGREGNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFAFRHARRAPAQSVEDLGSNEAAVVSASGSSSGYGVDDVGVDGAFYQSPGLWTF
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEcccccEEEEEEcccccccEEEcccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEccccHHccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHcccccccc
Coil and Loop (DISEMBL)
mvrpsggregnngrykgvrmrkwGKWVAEVrqpnsrgriwlgsyKTADEAARAYDAAVVCLrgssatlnfpdnppeiplademtpVQIQEFAFRharrapaqsvedlgsNEAAVVSAsgsssgygvddvgvdgafyqspglwtf
Flexible Loop (DISEMBL)
mvrpsggregnngrykgvrmrkwgkwvaevrqpnsrgriwlGSYKTADEAARAYDAAVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFAFRHARRAPAQSVEDLGSNEAAVVSASGsssgygvddvgVDGAFYQSPGLWTF
Low Complexity Region (SEG)
MVRPSGGREGNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTadeaaraydaaVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFAFRHARRAPAQSVEDLGSNEaavvsasgsssgygvddvgvdgaFYQSPGLWTF
Disordered region (IsUnstruct)
***************KGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLN*********************FA********************************GVDDVGVDGAFYQS******
Disordered Region (DISOPRED)
*****************VRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDNP*********************************************************DGAFYQSPGLWTF
Disordered Region (DISEMBL)
*********GNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFAFRHARRAPAQSVEDLGSNEAAVVSASGSSSGYGVDDVGVDGAFYQSPGLWTF
Disordered Region (DISPRO)
***********NGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDNPPEIPLAD*MT*VQIQEFAFRHAR*******************************VGVDGAFYQSPGLWTF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVRPSGGREGNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFAFRHARRAPAQSVEDLGSNEAAVVSASGSSSGYGVDDVGVDGAFYQSPGLWTF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
Q9C591	216	Ethylene-responsive trans	yes	no	0.812	0.541	0.511	1e-27
Q9S7L5	195	Ethylene-responsive trans	no	no	0.576	0.425	0.626	9e-26
Q84QC2	185	Ethylene-responsive trans	no	no	0.625	0.486	0.588	5e-25
Q8W3M3	150	Ethylene-responsive trans	no	no	0.437	0.42	0.746	3e-22
Q9FH94	184	Ethylene-responsive trans	no	no	0.541	0.423	0.594	2e-20
Q9SNE1	153	Ethylene-responsive trans	no	no	0.534	0.503	0.589	2e-20
Q9SFE4	230	Ethylene-responsive trans	no	no	0.541	0.339	0.529	3e-20
Q9SW63	196	Ethylene-responsive trans	no	no	0.402	0.295	0.741	4e-20
O22174	176	Ethylene-responsive trans	no	no	0.402	0.329	0.741	1e-19
Q8LC30	153	Ethylene-responsive trans	no	no	0.402	0.379	0.706	7e-19

>sp|Q9C591|ERF16_ARATH Ethylene-responsive transcription factor ERF016 OS=Arabidopsis thaliana GN=ERF016 PE=2 SV=1

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/127 (51%), Positives = 81/127 (63%), Gaps = 10/127 (7%)

Query: 14  RYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDN 73
           +Y GVR RKWGKWVAE+R PNSR RIWLGS+ +A++AARA+DAA+ CLRG  A  NFPDN
Sbjct: 6   KYTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKAARAFDAALYCLRGPGARFNFPDN 65

Query: 74  PPEIPLADEMTPVQIQEFAFRHA---------RRAPAQSVEDLGSNEAAVVSASGS-SSG 123
           PPEIP    +TP QIQ  A R A         +  P+    D  + E  ++SA G  +SG
Sbjct: 66  PPEIPGGRSLTPQQIQVVASRFACEEELLPPEQHHPSPPRGDHNTEEEVIISARGEINSG 125

Query: 124 YGVDDVG 130
            G   +G
Sbjct: 126 SGGPTLG 132

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7L5|ERF18_ARATH Ethylene-responsive transcription factor ERF018 OS=Arabidopsis thaliana GN=ERF018 PE=2 SV=1

 Score =  115 bits (288), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 63/83 (75%)

Query: 14  RYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDN 73
           +YKGVR RKWGKWV+E+R P+SR RIWLGSY T ++AARA+DAA  CLRG  A  NFP+N
Sbjct: 20  KYKGVRKRKWGKWVSEIRLPHSRERIWLGSYDTPEKAARAFDAAQFCLRGGDANFNFPNN 79

Query: 74  PPEIPLADEMTPVQIQEFAFRHA 96
           PP I +   +TP +IQE A R A
Sbjct: 80  PPSISVEKSLTPPEIQEAAARFA 102

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84QC2|ERF17_ARATH Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 66/90 (73%)

Query: 14  RYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDN 73
           +YKGVR RKWGKWV+E+R PNSR RIWLGSY T ++AARA+DAA+ CLRG++A  NFPDN
Sbjct: 11  KYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFPDN 70

Query: 74  PPEIPLADEMTPVQIQEFAFRHARRAPAQS 103
           PP I     ++  +I+E A R A  A   S
Sbjct: 71  PPVISGGRNLSRSEIREAAARFANSAEDDS 100

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3M3|RAP29_ARATH Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/63 (74%), Positives = 51/63 (80%)

Query: 10 GNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLN 69
           N  RYKG+RMRKWGKWVAE+R+PN R RIWLGSYKTA  AARAYD AV  LRG SA LN
Sbjct: 31 SNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLN 90

Query: 70 FPD 72
          FP+
Sbjct: 91 FPE 93

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH94|ERF10_ARATH Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana GN=ERF010 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 58/79 (73%), Gaps = 1/79 (1%)

Query: 15 YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDNP 74
          YKG+RMRKWGKWVAE+R+PN R R+WLGSY T + AARAYD AV  LRG +A LNFP+  
Sbjct: 21 YKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTARLNFPELL 80

Query: 75 PEIPLADE-MTPVQIQEFA 92
          P    +DE M+   I++ A
Sbjct: 81 PGEKFSDEDMSAATIRKKA 99

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SNE1|ERF11_ARATH Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana GN=ERF011 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 59/78 (75%), Gaps = 1/78 (1%)

Query: 15 YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDNP 74
          +KG+RMRKWGKWVAE+R+PN R R+WLGSY T + AARAYD AV  LRG +ATLNFP+  
Sbjct: 21 FKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTATLNFPELL 80

Query: 75 PEIPLADEMTPVQIQEFA 92
          P    A++M+   I++ A
Sbjct: 81 P-CTSAEDMSAATIRKKA 97

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SFE4|ERF12_ARATH Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 55/85 (64%), Gaps = 7/85 (8%)

Query: 15  YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDNP 74
           YKGVRMR WG WV+E+R PN + RIWLGSY TA+ AARAYD A++CL+G  A LNFP + 
Sbjct: 50  YKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFPTSS 109

Query: 75  PEIPLADE-------MTPVQIQEFA 92
               L D        ++P  IQ  A
Sbjct: 110 SSHHLLDNLLDENTLLSPKSIQRVA 134

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SW63|RA210_ARATH Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 43/58 (74%), Positives = 48/58 (82%)

Query: 15 YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPD 72
          YKG+RMRKWGKWVAE+R+PN R RIWLGSY T + AARAYD AV  LRG SA LNFP+
Sbjct: 30 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFPE 87

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O22174|ERF08_ARATH Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF008 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/58 (74%), Positives = 48/58 (82%)

Query: 15 YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPD 72
          YKG+RMRKWGKWVAE+R+PN R RIWLGSY T + AARAYD AV  LRG SA LNFP+
Sbjct: 28 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAARAYDTAVFYLRGPSARLNFPE 85

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC30|RAP21_ARATH Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-1 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 46/58 (79%)

Query: 15 YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPD 72
          Y+G+R RKWGKWVAE+R+PN R R+WLGSY T   AARAYD AV  LRG SA LNFPD
Sbjct: 31 YRGIRRRKWGKWVAEIREPNKRSRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFPD 88

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
255550367	133	Transcriptional factor TINY, putative [R	0.881	0.954	0.595	1e-37
341604897	159	ethylene-responsive element binding prot	0.965	0.874	0.549	9e-37
224143001	155	AP2/ERF domain-containing transcription	0.993	0.922	0.545	9e-36
225444653	220	PREDICTED: ethylene-responsive transcrip	0.979	0.640	0.535	5e-34
224069192	154	AP2/ERF domain-containing transcription	0.895	0.837	0.575	3e-33
225429734	191	PREDICTED: ethylene-responsive transcrip	0.909	0.685	0.492	2e-28
224088649	206	AP2/ERF domain-containing transcription	0.847	0.592	0.52	9e-28
449452608	203	PREDICTED: ethylene-responsive transcrip	0.729	0.517	0.555	4e-26
224142933	198	AP2/ERF domain-containing transcription	0.930	0.676	0.489	6e-26
22326940	216	ethylene-responsive transcription factor	0.812	0.541	0.511	7e-26

>gi|255550367|ref|XP_002516234.1| Transcriptional factor TINY, putative [Ricinus communis] gi|223544720|gb|EEF46236.1| Transcriptional factor TINY, putative [Ricinus communis]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/141 (59%), Positives = 98/141 (69%), Gaps = 14/141 (9%)

Query: 8   REGNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSAT 67
           R  N+ RYKGVRMRKWGKWVAE+RQPNSRGRIWLGSY TA+EAARAYDAA+ CLRG S T
Sbjct: 3   RSPNSSRYKGVRMRKWGKWVAEIRQPNSRGRIWLGSYNTAEEAARAYDAALFCLRGPSVT 62

Query: 68  LNFPDNPPEI-PLADEMTPVQIQEFAFRHARR---APAQSVEDLGSNEAAVVSASGSSSG 123
           LNFP NPP+I P   +++P+QI+E AFRHAR+   +   + EDLG       S  G SS 
Sbjct: 63  LNFPMNPPDINPAQTDLSPLQIREVAFRHARKGDESTTAAAEDLGYLPGESGSLDGISS- 121

Query: 124 YGVDDVGVDGAFYQSPGLWTF 144
                    G FYQ+PG WT 
Sbjct: 122 ---------GGFYQTPGAWTI 133

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|341604897|gb|AEK82609.1| ethylene-responsive element binding protein 2 [Hevea brasiliensis]

 Score =  157 bits (398), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 89/162 (54%), Positives = 111/162 (68%), Gaps = 23/162 (14%)

Query: 1   MVRPSGGR-EGNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVV 59
           MVR +G R E  +G YKGVRMRKWGKWVAE+RQPNSRGRIWLGSY TA+EAARAYDAA+ 
Sbjct: 1   MVRQNGARGERRDGGYKGVRMRKWGKWVAEIRQPNSRGRIWLGSYNTAEEAARAYDAALF 60

Query: 60  CLRGSSATLNFPDNPPEIPLADEMTPVQIQEFAFRHARRAPAQ--SVEDLGSNEAAVVSA 117
           CLRG SATLNFP NPP+I L  +++P+QI+E A RH+RR  ++  + +DL S     V A
Sbjct: 61  CLRGPSATLNFPMNPPDIHLTTDLSPLQIREAALRHSRRGVSEITASQDLSSR----VPA 116

Query: 118 SG--------------SSSGYGVD--DVGVDGAFYQSPGLWT 143
           SG               S+ + V+  D    GA+YQ+ G+WT
Sbjct: 117 SGLFQESSELRGEVYLPSTEHRVESLDRISGGAYYQASGVWT 158

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143001|ref|XP_002324813.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372136|gb|ABQ62999.1| RAP2-like protein [Populus trichocarpa] gi|222866247|gb|EEF03378.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 84/154 (54%), Positives = 106/154 (68%), Gaps = 11/154 (7%)

Query: 1   MVRPSGGREGNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVC 60
           MVR    R  ++GRYKGVRMRKWGKWVAE+RQPNSR RIWLGSY TA+EAARAYDAAV+C
Sbjct: 1   MVRERRERGDDSGRYKGVRMRKWGKWVAEIRQPNSRDRIWLGSYNTAEEAARAYDAAVLC 60

Query: 61  LRGSSATLNFPDNPPEIP-LADE-MTPVQIQEFAFRHARRA----PAQSVE-----DLGS 109
           LRG SAT +FP N PEIP + D+ ++P+QI+E A RHARR     PA+ +      ++ S
Sbjct: 61  LRGPSATFHFPTNIPEIPAMTDQVLSPMQIREVASRHARRGSTVEPAERIVGPGLCEVSS 120

Query: 110 NEAAVVSASGSSSGYGVDDVGVDGAFYQSPGLWT 143
             +  V   G  +     +    GA+YQ+PG+WT
Sbjct: 121 GRSGEVYLGGGENMEECLEGIFSGAYYQTPGVWT 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444653|ref|XP_002277621.1| PREDICTED: ethylene-responsive transcription factor ERF017 [Vitis vinifera]

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 82/153 (53%), Positives = 100/153 (65%), Gaps = 12/153 (7%)

Query: 1   MVRPSGGREGNN----GRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDA 56
           MVRPS  R+G+     GRYKGVRMRKWG WVAEVRQPNSR RIWLGSY   +EAARAYDA
Sbjct: 71  MVRPSARRDGDRNDVGGRYKGVRMRKWGSWVAEVRQPNSRDRIWLGSYGKPEEAARAYDA 130

Query: 57  AVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFAFRHARRAPAQSVEDLGSNEAAVVS 116
           AV+CLRGSSA LNFP  PP+IP A +++P +IQ  A +HAR+AP    E  G      V 
Sbjct: 131 AVLCLRGSSAILNFPSTPPDIPNAADLSPPEIQVAASKHARKAPE---ECEGPELKTPVQ 187

Query: 117 ASGSSSGYGVDDVGVDGAFYQSPGL-----WTF 144
              S++G   +++     F +S  +     WTF
Sbjct: 188 PEQSAAGPVPNELKFSMLFGESSDMHGYSEWTF 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069192|ref|XP_002326297.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372134|gb|ABQ62998.1| RAP2-like protein [Populus trichocarpa] gi|222833490|gb|EEE71967.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/139 (57%), Positives = 91/139 (65%), Gaps = 10/139 (7%)

Query: 15  YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDNP 74
           Y+GVRMRKWGKWVAE+RQPNSR RIWLGSY TA+EAARAYDAAV+CLRG SAT NFP N 
Sbjct: 15  YRGVRMRKWGKWVAEIRQPNSRNRIWLGSYNTAEEAARAYDAAVLCLRGPSATFNFPSNV 74

Query: 75  PEIPLADE-MTPVQIQEFAFRHARRAPAQSVEDLGSNEAAVVSASGSS-------SGYGV 126
           PEIP   E M P QI+E AFRHARR       +           SG S        G G 
Sbjct: 75  PEIPATTEIMPPAQIREVAFRHARRGSTLEAAERIVESGLFEGPSGMSGEVYLGGEGDGA 134

Query: 127 DDV-GV-DGAFYQSPGLWT 143
           +++ GV  G  YQ+ G+WT
Sbjct: 135 ENLEGVSSGVCYQTSGVWT 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429734|ref|XP_002280370.1| PREDICTED: ethylene-responsive transcription factor ERF017 [Vitis vinifera] gi|296081741|emb|CBI20746.3| unnamed protein product [Vitis vinifera]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/138 (49%), Positives = 89/138 (64%), Gaps = 7/138 (5%)

Query: 6   GGREGNN-GRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGS 64
           GG+ GN+  +YKGVR RKWGKWV+E+R PNSR RIWLGSY T ++AARA+DAA+ CLRG 
Sbjct: 15  GGQPGNSETKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALFCLRGH 74

Query: 65  SATLNFPDNPPEIPLADEMTPVQIQEFAFRHARRAPAQSVEDLGSNEAAVVS------AS 118
            A  NFPDNPP+IP  + +TP +IQ  A R A   P +   +L S  +   S       S
Sbjct: 75  GAKFNFPDNPPDIPGRESLTPSEIQLVAARFANEEPPKECSELESQHSQSESHHYNYTPS 134

Query: 119 GSSSGYGVDDVGVDGAFY 136
            S S    ++  +DG+F+
Sbjct: 135 CSLSEQLENETIMDGSFW 152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088649|ref|XP_002308508.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|148372132|gb|ABQ62997.1| RAP2-like protein [Populus trichocarpa] gi|222854484|gb|EEE92031.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  128 bits (321), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 65/125 (52%), Positives = 83/125 (66%), Gaps = 3/125 (2%)

Query: 14  RYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDN 73
           +YKGVR RKWGKWV+E+R PNSR RIWLGSY T ++AARA+DAA+ CLRGS A  NFPDN
Sbjct: 24  KYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGSGAKFNFPDN 83

Query: 74  PPEIPLADEMTPVQIQEFAFRHARRAPAQSVEDLGSNEAAVVSASGSSSGYG---VDDVG 130
           PP+I     +TP ++QE A R A   P  S    G + + V + + SSS  G   +D   
Sbjct: 84  PPDIVGGRSLTPQEVQEVAARFANEEPTSSTAMGGESSSHVENYTSSSSDCGAGQMDSDT 143

Query: 131 VDGAF 135
           +D +F
Sbjct: 144 IDWSF 148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452608|ref|XP_004144051.1| PREDICTED: ethylene-responsive transcription factor ERF017-like [Cucumis sativus] gi|449521559|ref|XP_004167797.1| PREDICTED: ethylene-responsive transcription factor ERF017-like [Cucumis sativus]

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/108 (55%), Positives = 75/108 (69%), Gaps = 3/108 (2%)

Query: 1   MVRPS---GGREGNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAA 57
           M +PS      + ++ RYKGVR RKWGKWV+E+R PNSR RIWLGSY +A++AARA+DAA
Sbjct: 1   MTKPSSAAAALDTSDSRYKGVRRRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAA 60

Query: 58  VVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFAFRHARRAPAQSVE 105
           + CLRG SA  NFP NPPEIP A  ++  +IQ  A + A   P  S E
Sbjct: 61  LFCLRGRSARFNFPQNPPEIPDATLLSRSEIQSVAAQFANSDPIPSSE 108

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142933|ref|XP_002324785.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222866219|gb|EEF03350.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/141 (48%), Positives = 89/141 (63%), Gaps = 7/141 (4%)

Query: 1   MVRPSG--GREGNNG---RYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYD 55
           MV+PS   G++ +     +YKGVR RKWGKWV+E+R PNSR RIWLGSY T  +AARA+D
Sbjct: 1   MVKPSSSSGQQSDRNHEPKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPLKAARAFD 60

Query: 56  AAVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFAFRHARRAP-AQSVEDLGSNEAAV 114
           AA+ CLRGS A  NFPDNPP+I     ++  +IQE A R A   P + S    G +   V
Sbjct: 61  AALYCLRGSGAKFNFPDNPPDIVGGQSLSSQEIQEVAARFANEEPTSSSTATRGESSEHV 120

Query: 115 VSASGSSSGYGVDDVGVDGAF 135
            + + SSS  G  D  +D +F
Sbjct: 121 ENDTSSSSDGGAGDT-IDWSF 140

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22326940|ref|NP_680184.1| ethylene-responsive transcription factor ERF016 [Arabidopsis thaliana] gi|75333357|sp|Q9C591.1|ERF16_ARATH RecName: Full=Ethylene-responsive transcription factor ERF016 gi|13374855|emb|CAC34489.1| putative protein [Arabidopsis thaliana] gi|29294061|gb|AAO73898.1| AP2 domain transcription factor, putative [Arabidopsis thaliana] gi|44021931|gb|AAS46630.1| At5g21960 [Arabidopsis thaliana] gi|45773852|gb|AAS76730.1| At5g21960 [Arabidopsis thaliana] gi|48479324|gb|AAT44933.1| putative AP2/EREBP transcription factor [Arabidopsis thaliana] gi|332005578|gb|AED92961.1| ethylene-responsive transcription factor ERF016 [Arabidopsis thaliana]

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 65/127 (51%), Positives = 81/127 (63%), Gaps = 10/127 (7%)

Query: 14  RYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDN 73
           +Y GVR RKWGKWVAE+R PNSR RIWLGS+ +A++AARA+DAA+ CLRG  A  NFPDN
Sbjct: 6   KYTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKAARAFDAALYCLRGPGARFNFPDN 65

Query: 74  PPEIPLADEMTPVQIQEFAFRHA---------RRAPAQSVEDLGSNEAAVVSASGS-SSG 123
           PPEIP    +TP QIQ  A R A         +  P+    D  + E  ++SA G  +SG
Sbjct: 66  PPEIPGGRSLTPQQIQVVASRFACEEELLPPEQHHPSPPRGDHNTEEEVIISARGEINSG 125

Query: 124 YGVDDVG 130
            G   +G
Sbjct: 126 SGGPTLG 132

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
TAIR|locus:504956445	216	AT5G21960 [Arabidopsis thalian	0.576	0.384	0.566	1.9e-21
TAIR|locus:2027171	195	ORA47 [Arabidopsis thaliana (t	0.576	0.425	0.542	1.3e-20
TAIR|locus:2202200	185	AT1G19210 [Arabidopsis thalian	0.680	0.529	0.479	2.7e-20
TAIR|locus:1005716457	150	RAP2.9 "related to AP2 9" [Ara	0.631	0.606	0.489	2.2e-18
TAIR|locus:2074765	153	CEJ1 "cooperatively regulated	0.534	0.503	0.5	1.1e-16
TAIR|locus:2155498	184	DEAR2 "DREB and EAR motif prot	0.541	0.423	0.506	1.1e-16
TAIR|locus:2058641	176	DEAR3 "DREB and EAR motif prot	0.465	0.380	0.567	2.3e-16
TAIR|locus:2115005	196	RAP2.10 "related to AP2 10" [A	0.402	0.295	0.620	2.9e-16
TAIR|locus:2144296	236	TINY2 "AT5G11590" [Arabidopsis	0.673	0.411	0.377	9.8e-16
TAIR|locus:2204730	244	AT1G77640 [Arabidopsis thalian	0.576	0.340	0.449	1.6e-15

TAIR|locus:504956445 AT5G21960 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 47/83 (56%), Positives = 53/83 (63%)

Query:    14 RYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDN 73
             +Y GVR RKWGKWVAE+R PNSR RIWLGS+ +           + CLRG  A  NFPDN
Sbjct:     6 KYTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKAARAFDAALYCLRGPGARFNFPDN 65

Query:    74 PPEIPLADEMTPVQIQEFAFRHA 96
             PPEIP    +TP QIQ  A R A
Sbjct:    66 PPEIPGGRSLTPQQIQVVASRFA 88

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2027171 ORA47 [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 45/83 (54%), Positives = 53/83 (63%)

Query:    14 RYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDN 73
             +YKGVR RKWGKWV+E+R P+SR RIWLGSY T             CLRG  A  NFP+N
Sbjct:    20 KYKGVRKRKWGKWVSEIRLPHSRERIWLGSYDTPEKAARAFDAAQFCLRGGDANFNFPNN 79

Query:    74 PPEIPLADEMTPVQIQEFAFRHA 96
             PP I +   +TP +IQE A R A
Sbjct:    80 PPSISVEKSLTPPEIQEAAARFA 102

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0002213 "defense response to insect" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2202200 AT1G19210 [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 47/98 (47%), Positives = 57/98 (58%)

Query:     6 GGREGNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSS 65
             G       +YKGVR RKWGKWV+E+R PNSR RIWLGSY T           + CLRG++
Sbjct:     3 GSSSSMQSKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNN 62

Query:    66 ATLNFPDNPPEIPLADEMTPVQIQEFAFRHARRAPAQS 103
             A  NFPDNPP I     ++  +I+E A R A  A   S
Sbjct:    63 AKFNFPDNPPVISGGRNLSRSEIREAAARFANSAEDDS 100

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:1005716457 RAP2.9 "related to AP2 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 48/98 (48%), Positives = 57/98 (58%)

Query:    11 NNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNF 70
             N  RYKG+RMRKWGKWVAE+R+PN R RIWLGSYKT           V  LRG SA LNF
Sbjct:    32 NEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNF 91

Query:    71 PD------NPPEIPLADEMTPVQIQEFAFRHARRAPAQ 102
             P+      N  E  L  +M+P  I++ A     R  A+
Sbjct:    92 PEEVFKDGNGGE-GLGGDMSPTLIRKKAAEVGARVDAE 128

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2074765 CEJ1 "cooperatively regulated by ethylene and jasmonate 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 39/78 (50%), Positives = 51/78 (65%)

Query:    15 YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNP 74
             +KG+RMRKWGKWVAE+R+PN R R+WLGSY T           V  LRG +ATLNFP+  
Sbjct:    21 FKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTATLNFPELL 80

Query:    75 PEIPLADEMTPVQIQEFA 92
             P    A++M+   I++ A
Sbjct:    81 P-CTSAEDMSAATIRKKA 97

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009409 "response to cold" evidence=IEP

GO:0009617 "response to bacterium" evidence=IEP

GO:0010941 "regulation of cell death" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2155498 DEAR2 "DREB and EAR motif protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 40/79 (50%), Positives = 50/79 (63%)

Query:    15 YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNP 74
             YKG+RMRKWGKWVAE+R+PN R R+WLGSY T           V  LRG +A LNFP+  
Sbjct:    21 YKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTARLNFPELL 80

Query:    75 PEIPLADE-MTPVQIQEFA 92
             P    +DE M+   I++ A
Sbjct:    81 PGEKFSDEDMSAATIRKKA 99

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2058641 DEAR3 "DREB and EAR motif protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 38/67 (56%), Positives = 44/67 (65%)

Query:     6 GGREGNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSS 65
             G R+ +   YKG+RMRKWGKWVAE+R+PN R RIWLGSY T           V  LRG S
Sbjct:    19 GTRKRDLKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAARAYDTAVFYLRGPS 78

Query:    66 ATLNFPD 72
             A LNFP+
Sbjct:    79 ARLNFPE 85

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2115005 RAP2.10 "related to AP2 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 36/58 (62%), Positives = 40/58 (68%)

Query:    15 YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPD 72
             YKG+RMRKWGKWVAE+R+PN R RIWLGSY T           V  LRG SA LNFP+
Sbjct:    30 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFPE 87

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

TAIR|locus:2144296 TINY2 "AT5G11590" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 37/98 (37%), Positives = 55/98 (56%)

Query:     7 GRE-GNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSS 65
             GR+ G +  Y+GVRMR WGKWV+E+R+P  + RIWLG++ T            + ++G++
Sbjct:    42 GRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTA 101

Query:    66 ATLNFPDNPPEIPLADEMTPVQIQEFAFRHARRAPAQS 103
             A LNFP+     P    ++P  IQ  A + A   P  S
Sbjct:   102 AILNFPELADSFPRPVSLSPRDIQTAALKAAHMEPTTS 139

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2204730 AT1G77640 [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 40/89 (44%), Positives = 50/89 (56%)

Query:    14 RYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPD- 72
             +YKGVRMR WG WV E+R PN + RIWLGSY T           ++CL+G  A LNFP+ 
Sbjct:    42 KYKGVRMRSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPKANLNFPNI 101

Query:    73 --NPPEIPLADEMT---PVQIQEFAFRHA 96
                 P +   DE T   P  IQ+ A + A
Sbjct:   102 TTTSPFLMNIDEKTLLSPKSIQKVAAQAA 130

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	144
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-29
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-27
pfam00847	53	pfam00847, AP2, AP2 domain	6e-12

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  101 bits (254), Expect = 2e-29
 Identities = 36/63 (57%), Positives = 47/63 (74%)

Query: 14 RYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDN 73
          +Y+GVR R WGKWVAE+R P+   R+WLG++ TA+EAARAYD A    RG SA LNFP++
Sbjct: 1  KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Query: 74 PPE 76
            +
Sbjct: 61 LYD 63

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 96.2 bits (240), Expect = 2e-27
 Identities = 40/60 (66%), Positives = 49/60 (81%)

Query: 14 RYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDN 73
          +Y+GVR R WGKWVAE+R P+   RIWLG++ TA+EAARAYD A + LRGSSA LNFPD+
Sbjct: 2  KYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 56.5 bits (137), Expect = 6e-12
 Identities = 28/53 (52%), Positives = 35/53 (66%), Gaps = 4/53 (7%)

Query: 14 RYKGVRMRK-WGKWVAEVRQPNSRG--RIWLGSYKTADEAARAYDAAVVCLRG 63
           YKGVR  K WG+WVAE+R P  +   R  LG++ T +EAARA  AA + LRG
Sbjct: 2  GYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.88
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.88
PHA00280	121	putative NHN endonuclease	99.64
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.3
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	86.13
PF13356	89	DUF4102: Domain of unknown function (DUF4102); PDB	82.0

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.88  E-value=1e-22  Score=132.34  Aligned_cols=61  Identities=66%  Similarity=1.210  Sum_probs=57.7

Q ss_pred             CceeEEEEcCCCcEEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 032258           13 GRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDN   73 (144)
Q Consensus        13 S~yrGV~~~~~gkw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~~~~G~~a~~NFp~~   73 (144)
                      |+|+||+++++|||+|+|+++..++++|||+|+|+|||++|||.++++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999988899999999776688999999999999999999999999999999999975

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.88  E-value=2.4e-22  Score=132.00  Aligned_cols=63  Identities=57%  Similarity=1.103  Sum_probs=60.0

Q ss_pred             ceeEEEEcCCCcEEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 032258           14 RYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDNPPE   76 (144)
Q Consensus        14 ~yrGV~~~~~gkw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~~~~G~~a~~NFp~~~~~   76 (144)
                      +|+||+++++|||+|+|+++.+++.+|||+|+|+||||+|||.++++++|..+.+|||.+.|+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599999888999999999877899999999999999999999999999999999999999886

>PHA00280 putative NHN endonuclease

Probab=99.64  E-value=5.5e-16  Score=113.98  Aligned_cols=62  Identities=19%  Similarity=0.160  Sum_probs=55.6

Q ss_pred             CCCCCCCCCCCceeEEEEcC-CCcEEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHHHhcCCCCC
Q 032258            3 RPSGGREGNNGRYKGVRMRK-WGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCLRGSSAT   67 (144)
Q Consensus         3 r~~~~~~~~~S~yrGV~~~~-~gkw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~~~~G~~a~   67 (144)
                      +|.+.+++|+|+|+||+|++ .|||+|+|+  .+||+++||.|+++|+|+.||+ ++.+++|+++.
T Consensus        57 ~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~--~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         57 WNMKTPKSNTSGLKGLSWSKEREMWRGTVT--AEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             cccCCCCCCCCCCCeeEEecCCCeEEEEEE--ECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            56777889999999999876 689999999  7788999999999999999997 67889999875

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.30  E-value=5.9e-12  Score=79.78  Aligned_cols=52  Identities=37%  Similarity=0.521  Sum_probs=45.2

Q ss_pred             CceeEEEEcC-CCcEEEEEeccCC---CeeEeeccCCCHHHHHHHHHHHHHHhcCC
Q 032258           13 GRYKGVRMRK-WGKWVAEVRQPNS---RGRIWLGSYKTADEAARAYDAAVVCLRGS   64 (144)
Q Consensus        13 S~yrGV~~~~-~gkw~A~I~~~~~---~k~i~LG~f~t~eeAA~AYd~aa~~~~G~   64 (144)
                      |+|+||++++ .++|+|+|++...   ++.++||.|++++||+++++.+...++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            7899999876 6899999997321   48999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=86.13  E-value=3.4  Score=24.77  Aligned_cols=38  Identities=24%  Similarity=0.270  Sum_probs=29.0

Q ss_pred             cEEEEEe--cc--CCCeeEeeccCCCHHHHHHHHHHHHHHhc
Q 032258           25 KWVAEVR--QP--NSRGRIWLGSYKTADEAARAYDAAVVCLR   62 (144)
Q Consensus        25 kw~A~I~--~~--~~~k~i~LG~f~t~eeAA~AYd~aa~~~~   62 (144)
                      +|...|.  .+  +++++++-+.|.|..||..+.......+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            4777773  33  34468899999999999999988777654

>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A

Probab=82.00  E-value=6.8  Score=26.42  Aligned_cols=43  Identities=26%  Similarity=0.279  Sum_probs=29.5

Q ss_pred             EEcCCC--cEEEEEeccCCCeeEeeccCCC--HHHHHHHHHHHHHHh
Q 032258           19 RMRKWG--KWVAEVRQPNSRGRIWLGSYKT--ADEAARAYDAAVVCL   61 (144)
Q Consensus        19 ~~~~~g--kw~A~I~~~~~~k~i~LG~f~t--~eeAA~AYd~aa~~~   61 (144)
                      +..+.|  .|.-+.+..++.+++.||.|++  ..+|..........+
T Consensus        28 ~v~~~G~kt~~~r~~~~gk~~~~~lG~~p~~sl~~AR~~a~~~~~~~   74 (89)
T PF13356_consen   28 RVTPSGSKTFYFRYRINGKRRRITLGRYPELSLAEAREKARELRALV   74 (89)
T ss_dssp             EE-TTS-EEEEEEEEETTEEEEEEEEECTTS-HHHHHHHHHHHHHHH
T ss_pred             EEEeCCCeEEEEEEEecceEEEeccCCCccCCHHHHHHHHHHHHHHH
Confidence            445665  5999998777777999999976  566665555544444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	144
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-08
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		2e-08

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 15 YKGVRMRKWGKWVAEVRQPNSRG-RIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFP 71
          Y+GVR R WGK+ AE+R P   G R+WLG+++T              +RGS A LNFP
Sbjct: 6  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 15 YKGVRMRKWGKWVAEVRQPNSRG-RIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFP 71
          Y+GVR R WGK+ AE+R P   G R+WLG+++T              +RGS A LNFP
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	144
1gcc_A	63	Ethylene responsive element binding factor 1; tran	1e-26

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score = 93.5 bits (233), Expect = 1e-26
 Identities = 33/61 (54%), Positives = 43/61 (70%), Gaps = 1/61 (1%)

Query: 14 RYKGVRMRKWGKWVAEVRQPNSRG-RIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPD 72
           Y+GVR R WGK+ AE+R P   G R+WLG+++TA++AA AYD A   +RGS A LNFP 
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 73 N 73
           
Sbjct: 62 R 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	144
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.93
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	91.19
3jtz_A	88	Integrase; four stranded beta-sheet, DNA binding p	89.91
1z1b_A	356	Integrase; protein-DNA complex, DNA binding protei	87.82
3ju0_A	108	Phage integrase; four stranded beta-sheet, DNA bin	84.61
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	83.02

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.93  E-value=1.6e-26  Score=151.26  Aligned_cols=60  Identities=53%  Similarity=1.011  Sum_probs=56.9

Q ss_pred             ceeEEEEcCCCcEEEEEeccCC-CeeEeeccCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 032258           14 RYKGVRMRKWGKWVAEVRQPNS-RGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDN   73 (144)
Q Consensus        14 ~yrGV~~~~~gkw~A~I~~~~~-~k~i~LG~f~t~eeAA~AYd~aa~~~~G~~a~~NFp~~   73 (144)
                      +||||+++++|||+|+|+++.+ ++++|||+|+|+||||+|||.|+++++|.++.+|||++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999999999999999999874 68999999999999999999999999999999999975

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=91.19  E-value=0.18  Score=33.42  Aligned_cols=26  Identities=27%  Similarity=0.345  Sum_probs=21.0

Q ss_pred             CCCCceeEEEEcC-CCcEEEEEeccCC
Q 032258           10 GNNGRYKGVRMRK-WGKWVAEVRQPNS   35 (144)
Q Consensus        10 ~~~S~yrGV~~~~-~gkw~A~I~~~~~   35 (144)
                      ..+|+|+||+|.+ .+.|.|.-.+.++
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~   29 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYDGAS   29 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEETTE
T ss_pred             CCCCCCCcEEeecCCceEEEEEecCCe
Confidence            4679999999986 5899999996644

>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A

Probab=89.91  E-value=0.84  Score=30.45  Aligned_cols=45  Identities=22%  Similarity=0.394  Sum_probs=34.2

Q ss_pred             EEEcCCC--cEEEEEeccCCCeeEeeccCC--CHHHHHHHHHHHHHHhc
Q 032258           18 VRMRKWG--KWVAEVRQPNSRGRIWLGSYK--TADEAARAYDAAVVCLR   62 (144)
Q Consensus        18 V~~~~~g--kw~A~I~~~~~~k~i~LG~f~--t~eeAA~AYd~aa~~~~   62 (144)
                      ++..++|  .|+-+.+..++.+++.||.|+  |.++|....+.+...+.
T Consensus        28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l~   76 (88)
T 3jtz_A           28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKMLA   76 (88)
T ss_dssp             EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHHT
T ss_pred             EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHHH
Confidence            3455665  599988877777789999997  58888888777776653

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*

Probab=87.82  E-value=0.81  Score=35.76  Aligned_cols=41  Identities=17%  Similarity=0.093  Sum_probs=29.7

Q ss_pred             EEEEcCCCcEEEEEeccCCCeeEeeccCCCHHHHHHHHHHHHHHh
Q 032258           17 GVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYDAAVVCL   61 (144)
Q Consensus        17 GV~~~~~gkw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd~aa~~~   61 (144)
                      ||+.++.|.|..+..  .+|+++.+|.  |..||......+...+
T Consensus        15 ~v~~~~~g~~~~r~~--~~gk~~~~g~--t~~eA~~~a~~~~~~~   55 (356)
T 1z1b_A           15 NLYIRNNGYYCYRDP--RTGKEFGLGR--DRRIAITEAIQANIEL   55 (356)
T ss_dssp             TEEEETTTEEEEECT--TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred             cceecCCCeEEEEee--cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence            577777789987765  5667889996  8888877766554433

>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}

Probab=84.61  E-value=2.1  Score=29.54  Aligned_cols=45  Identities=22%  Similarity=0.285  Sum_probs=33.5

Q ss_pred             EEEcCCC--cEEEEEeccCCCeeEeeccCC--CHHHHHHHHHHHHHHhc
Q 032258           18 VRMRKWG--KWVAEVRQPNSRGRIWLGSYK--TADEAARAYDAAVVCLR   62 (144)
Q Consensus        18 V~~~~~g--kw~A~I~~~~~~k~i~LG~f~--t~eeAA~AYd~aa~~~~   62 (144)
                      |+..++|  .|+-+.+..++.+++.||.|+  |..+|....+.+...+.
T Consensus        28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l~   76 (108)
T 3ju0_A           28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLLA   76 (108)
T ss_dssp             EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence            3455665  599988876777789999997  58888877777666653

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=83.02  E-value=0.2  Score=37.11  Aligned_cols=38  Identities=11%  Similarity=-0.033  Sum_probs=28.1

Q ss_pred             eeEEEEcCCCcEEEEEeccCCCeeEeeccCCCHHHHHHHHH
Q 032258           15 YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTADEAARAYD   55 (144)
Q Consensus        15 yrGV~~~~~gkw~A~I~~~~~~k~i~LG~f~t~eeAA~AYd   55 (144)
                      .+||.+.+.++|.+.|...   +.++||.|+|.+|||++|.
T Consensus       109 ~~g~~~~~~~k~~~vi~~~---~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVIS---PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEEC---TTSCEEEESCHHHHHHHHT
T ss_pred             eeeeeeccCCCCceEEEEc---CCceEEeeCCHHHHHHHHC
Confidence            3566442235688888854   4677999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	144
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-27

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 94.4 bits (235), Expect = 2e-27
 Identities = 33/59 (55%), Positives = 43/59 (72%), Gaps = 1/59 (1%)

Query: 14 RYKGVRMRKWGKWVAEVRQPNSRG-RIWLGSYKTADEAARAYDAAVVCLRGSSATLNFP 71
           Y+GVR R WGK+ AE+R P   G R+WLG+++TA++AA AYD A   +RGS A LNFP
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	144
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.93

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=7.4e-27  Score=151.33  Aligned_cols=60  Identities=53%  Similarity=1.015  Sum_probs=55.7

Q ss_pred             ceeEEEEcCCCcEEEEEeccC-CCeeEeeccCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 032258           14 RYKGVRMRKWGKWVAEVRQPN-SRGRIWLGSYKTADEAARAYDAAVVCLRGSSATLNFPDN   73 (144)
Q Consensus        14 ~yrGV~~~~~gkw~A~I~~~~-~~k~i~LG~f~t~eeAA~AYd~aa~~~~G~~a~~NFp~~   73 (144)
                      .||||+++++|||+|+|+++. +++++|||+|+|+||||+|||.|+++++|.++.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            499999998999999999874 457899999999999999999999999999999999974