Citrus Sinensis ID: 032260

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MGFRFRNINSMCRTYITRVSSQSNNYYHPIIQCQSLNFQFQNHPSSVCSNQHYLKIPIRWHLGHSHDHHQQLSGKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF
Secondary Structure (PSIPRED)
cccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEccccHHHHHHEEEHcccccccccccccccccccccccccccccccccEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MGFRFRNINSMCRTYITRVSsqsnnyyhpiiqcqslnfqfqnhpssvcsnqhylkipirwhlghshdhhqqlsgkdaENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKaakapkdkehpyghf
Flexible Loop (DISEMBL)
MGFRFRNINSMCRTYITRVSSQSNNYYHPIIQCQSLNFQFQNHPSSVCSNQHYLKIPIRWHLGHSHDHHQQLSGKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKaakapkdkehpyghf
Low Complexity Region (SEG)
MGFRFRNINSMCRTYITRVSSQSNNYYHPIIQCQSLNFQFQNHPSSVCSNQHYLKIPIRWHLGHSHDHHQQLSGKDAENIFRLGLASDVGLAAGKALTGYLSGSTaiiadaahsisdVVLSSIALWSYKAAKAPKDKEHPYGHF
Disordered region (IsUnstruct)
***RFRNINSMCRTYITRVSSQSNNYYHPIIQCQSLNFQFQNHPSSVCSNQHYLKIPIRWHLGHSHDHHQQLSGKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKA**************
Disordered Region (DISOPRED)
*GFR***INSMCRTYITR*************************************************************IFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDK**PYGHF
Disordered Region (DISEMBL)
MGFRFRNINSMCRTYITRVSSQSNNYYHPIIQCQSLNFQFQNHPSSVCSNQHYLKIPIRWHLG**********GKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAA*************
Disordered Region (DISPRO)
*GFRFRNINSMCRTYITRVSSQSNNYYHPIIQCQSLNFQFQNHPSSVCSNQHYLKIPIRWHLGHSHDHH*QLSGKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKD********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGFRFRNINSMCRTYITRVSSQSNNYYHPIIQCQSLNFQFQNHPSSVCSNQHYLKIPIRWHLGHSHDHHQQLSGKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
Q8L725	471	Metal tolerance protein C	yes	no	0.583	0.178	0.712	1e-29
Q10LJ2	389	Metal tolerance protein 2	yes	no	0.465	0.172	0.791	4e-24
Q08970	484	Mitochondrial metal trans	yes	no	0.513	0.152	0.378	1e-06
C0SP78	297	Uncharacterized transport	yes	no	0.5	0.242	0.355	3e-05
P46348	290	Uncharacterized transport	no	no	0.486	0.241	0.342	4e-05
Q57891	283	Uncharacterized transport	yes	no	0.305	0.155	0.454	5e-05
Q03218	510	Mitochondrial metal trans	no	no	0.513	0.145	0.351	8e-05
O59758	397	Uncharacterized metal tra	yes	no	0.548	0.198	0.307	0.0006

>sp|Q8L725|MTPC1_ARATH Metal tolerance protein C1 OS=Arabidopsis thaliana GN=MTPC1 PE=2 SV=1

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/87 (71%), Positives = 70/87 (80%), Gaps = 3/87 (3%)

Query: 59  RWHLGHSHDHHQQLS--GKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSIS 116
           RWH GH  DHHQQ    G++ E IFRLGL +D+GL+  KALTGYL GSTAIIADAAHS+S
Sbjct: 54  RWHFGHP-DHHQQYQKPGEEGEKIFRLGLTADIGLSVAKALTGYLCGSTAIIADAAHSVS 112

Query: 117 DVVLSSIALWSYKAAKAPKDKEHPYGH 143
           DVVLS +AL SY+AA  PKDKEHPYGH
Sbjct: 113 DVVLSGVALVSYRAANVPKDKEHPYGH 139

Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.
Arabidopsis thaliana (taxid: 3702)

>sp|Q10LJ2|MTP2_ORYSJ Metal tolerance protein 2 OS=Oryza sativa subsp. japonica GN=MTP2 PE=2 SV=1

 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/67 (79%), Positives = 60/67 (89%)

Query: 77  AENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKD 136
           +E IFRLGLA+DV L  GKA+TGYLSGSTAI ADAAHS+SD+VLS +AL SYKAAKAP+D
Sbjct: 76  SERIFRLGLAADVVLTVGKAVTGYLSGSTAIAADAAHSLSDIVLSGVALLSYKAAKAPRD 135

Query: 137 KEHPYGH 143
           KEHPYGH
Sbjct: 136 KEHPYGH 142

Involved in sequestration of excess metal in the cytoplasm into vacuoles to maintain metal homeostasis.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q08970|MMT2_YEAST Mitochondrial metal transporter 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MMT2 PE=1 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 44/74 (59%)

Query: 70  QQLSGKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYK 129
           QQ+       I  +GLAS+VG+A GK + G    S A++AD+ H++SD+V   + L+S +
Sbjct: 122 QQIKKNPGVRITWIGLASNVGMAVGKFVGGITFHSQALLADSVHALSDLVSDFLTLFSVQ 181

Query: 130 AAKAPKDKEHPYGH 143
            A      E+PYG+
Sbjct: 182 YASRKPTSEYPYGY 195

Mitochondrial metal transporter involved in mitochondrial iron accumulation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|C0SP78|YDFM_BACSU Uncharacterized transporter YdfM OS=Bacillus subtilis (strain 168) GN=ydfM PE=3 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 68  HHQQLSGKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWS 127
             +Q+S K A     + L +++ L AGK   G +  S A+ AD  HS +DVV S   L  
Sbjct: 4   EREQISRKVA----LIALIANLILMAGKVFFGLVGDSEAVFADGIHSAADVVASIAVLAV 59

Query: 128 YKAAKAPKDKEHPYGH 143
              +  P D++HP+GH
Sbjct: 60  IGISNKPPDQDHPFGH 75

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P46348|YEAB_BACSU Uncharacterized transporter YeaB OS=Bacillus subtilis (strain 168) GN=yeaB PE=3 SV=2

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 42/70 (60%)

Query: 75  KDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAP 134
           K  E+   + +A+ + L+A K + GYL  S A+ AD  ++ +D++ S   L   + ++ P
Sbjct: 8   KKGESGALVSIAAYLVLSAIKLIIGYLFHSEALTADGLNNTTDIIASVAVLIGLRISQKP 67

Query: 135 KDKEHPYGHF 144
            D++HPYGHF
Sbjct: 68  PDEDHPYGHF 77

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q57891|Y449_METJA Uncharacterized transporter MJ0449 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0449 PE=3 SV=1

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 100 YLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGH 143
           Y+  S ++I+D  HS+SDV+ S I +   K A  P D+ HPYGH
Sbjct: 27  YVYSSISLISDGIHSLSDVITSIIGIIGVKIASKPPDESHPYGH 70

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|Q03218|MMT1_YEAST Mitochondrial metal transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MMT1 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 39/74 (52%)

Query: 70  QQLSGKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYK 129
           +Q+       I  +GL  +VG+A GK   G +  S A+ ADA H+ISD+V   + L S  
Sbjct: 153 EQIRKNAGVRITWVGLGVNVGIAIGKFFGGIVFHSQALFADAIHAISDMVSDLLTLLSVG 212

Query: 130 AAKAPKDKEHPYGH 143
            A      ++PYG+
Sbjct: 213 LAANKPTADYPYGY 226

Mitochondrial metal transporter involved in mitochondrial iron accumulation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O59758|YJM3_SCHPO Uncharacterized metal transporter C1020.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1020.03 PE=3 SV=1

 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 12/91 (13%)

Query: 64  HSHDHHQ-----------QLSGKDAE-NIFRLGLASDVGLAAGKALTGYLSGSTAIIADA 111
           H+HDH             +  GK  E  +  LGL S++GLAA K + G    S+ ++ADA
Sbjct: 48  HTHDHGSDKEMLELVKALKKEGKSPELKLAWLGLYSNIGLAAAKGIGGVALQSSILVADA 107

Query: 112 AHSISDVVLSSIALWSYKAAKAPKDKEHPYG 142
           AH + D +   + L + K       +++P G
Sbjct: 108 AHQLGDTLSDLVTLATLKICSKKPTQKYPAG 138

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
356500266	491	PREDICTED: metal tolerance protein C1-li	0.937	0.274	0.630	9e-38
449436799	500	PREDICTED: metal tolerance protein C1-li	0.937	0.27	0.556	4e-37
356535392	490	PREDICTED: metal tolerance protein C1-li	0.937	0.275	0.609	8e-36
255636852	407	unknown [Glycine max]	0.937	0.331	0.609	1e-35
359479745	520	PREDICTED: metal tolerance protein C1 [V	0.965	0.267	0.551	9e-34
388496216	162	unknown [Medicago truncatula]	0.951	0.845	0.586	4e-30
255559272	479	cation efflux protein/ zinc transporter,	0.875	0.263	0.526	6e-28
3738295	483	unknown protein [Arabidopsis thaliana]	0.583	0.173	0.712	7e-28
30690801	471	metal tolerance protein C1 [Arabidopsis	0.583	0.178	0.712	8e-28
30690804	468	metal tolerance protein C1 [Arabidopsis	0.583	0.179	0.712	9e-28

>gi|356500266|ref|XP_003518954.1| PREDICTED: metal tolerance protein C1-like [Glycine max]

 Score =  161 bits (407), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 92/146 (63%), Positives = 109/146 (74%), Gaps = 11/146 (7%)

Query: 1   MGFRFRNINSMCRTYITRVSSQSNNYYHPIIQCQSLNFQFQNHPSSVCSNQH-YLKIPIR 59
           MGFR RN+N + RT ITR+SS  +N+  P+++  SLN    +HP   C  ++   KIP R
Sbjct: 1   MGFRVRNLNPVFRTCITRLSS--SNFLPPVLE--SLN----SHPLESCLTENPAFKIPRR 52

Query: 60  WHLGHSHDHHQQLSG--KDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISD 117
           WHLGHSH HH       K+ ENIFRLGLA+D+GLA GKA TGYLSGSTAIIADAAHS+SD
Sbjct: 53  WHLGHSHSHHDDRHHYHKEGENIFRLGLAADIGLATGKAFTGYLSGSTAIIADAAHSVSD 112

Query: 118 VVLSSIALWSYKAAKAPKDKEHPYGH 143
           VVLS IAL S+K AKAP+DKEHPYGH
Sbjct: 113 VVLSGIALLSFKVAKAPRDKEHPYGH 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436799|ref|XP_004136180.1| PREDICTED: metal tolerance protein C1-like [Cucumis sativus] gi|449524166|ref|XP_004169094.1| PREDICTED: metal tolerance protein C1-like [Cucumis sativus]

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 84/151 (55%), Positives = 105/151 (69%), Gaps = 16/151 (10%)

Query: 1   MGFRFRNINSMCRTYITRVSSQSNNYYH--PIIQCQSLNFQFQ-----NHPSSVCSNQHY 53
           MG+RF  +N + +++ +R+S  ++  +H  P  Q  SL+ QF      + P S       
Sbjct: 1   MGYRFHRLNPILQSFYSRISPPTHKEFHSIPSFQSPSLHPQFTFLGIYDDPKS------- 53

Query: 54  LKIPIRWHLGHSHDHHQQ-LSGKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAA 112
            KI  RWHLGHSH H      G++ ENIF+LGL +D+GLA GKA+TGYLSGSTAIIADAA
Sbjct: 54  -KICRRWHLGHSHRHDDDHRFGQEGENIFKLGLGADIGLAVGKAVTGYLSGSTAIIADAA 112

Query: 113 HSISDVVLSSIALWSYKAAKAPKDKEHPYGH 143
           HS+SDVVLS IALWS+KA KAPKDKEHPYGH
Sbjct: 113 HSVSDVVLSGIALWSFKAGKAPKDKEHPYGH 143

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535392|ref|XP_003536229.1| PREDICTED: metal tolerance protein C1-like [Glycine max]

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 89/146 (60%), Positives = 106/146 (72%), Gaps = 11/146 (7%)

Query: 1   MGFRFRNINSMCRTYITRVSSQSNNYYHPIIQCQSLNFQFQNHPSSVCSNQH-YLKIPIR 59
           MGFR RN+N + R  +TR SS  +N+  P+++  SLN    +HP   C  ++   KIP R
Sbjct: 1   MGFRVRNLNPIYRKCVTRFSS--SNFLPPVLE--SLN----SHPLESCLTENPAFKIPRR 52

Query: 60  WHLGHSHDHHQQLSG--KDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISD 117
           WHLGHSH HH       K+ E IFRLGLA+D+GLA GKA TGYLSGSTAIIADAAHS+SD
Sbjct: 53  WHLGHSHSHHDDRHHYHKEGEKIFRLGLAADIGLATGKAFTGYLSGSTAIIADAAHSVSD 112

Query: 118 VVLSSIALWSYKAAKAPKDKEHPYGH 143
           VVLS IAL S+K AKAP+DKEHPYGH
Sbjct: 113 VVLSGIALLSFKVAKAPRDKEHPYGH 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636852|gb|ACU18759.1| unknown [Glycine max]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/146 (60%), Positives = 106/146 (72%), Gaps = 11/146 (7%)

Query: 1   MGFRFRNINSMCRTYITRVSSQSNNYYHPIIQCQSLNFQFQNHPSSVCSNQH-YLKIPIR 59
           MGFR RN+N + R  +TR SS  +N+  P+++  SLN    +HP   C  ++   KIP R
Sbjct: 1   MGFRVRNLNPIYRKCVTRFSS--SNFLPPVLE--SLN----SHPLESCLTENPAFKIPRR 52

Query: 60  WHLGHSHDHHQQLSG--KDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISD 117
           WHLGHSH HH       K+ E IFRLGLA+D+GLA GKA TGYLSGSTAIIADAAHS+SD
Sbjct: 53  WHLGHSHSHHDDRHHYHKEGEKIFRLGLAADIGLATGKAFTGYLSGSTAIIADAAHSVSD 112

Query: 118 VVLSSIALWSYKAAKAPKDKEHPYGH 143
           VVLS IAL S+K AKAP+DKEHPYGH
Sbjct: 113 VVLSGIALLSFKVAKAPRDKEHPYGH 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479745|ref|XP_002269478.2| PREDICTED: metal tolerance protein C1 [Vitis vinifera] gi|296086610|emb|CBI32245.3| unnamed protein product [Vitis vinifera]

 Score =  147 bits (372), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 85/154 (55%), Positives = 108/154 (70%), Gaps = 15/154 (9%)

Query: 1   MGFRFRNINSMCRTYITRVSS-------QSNNYYHPIIQCQSLNFQFQNH-PSSVCSNQH 52
           MGFRF+N+NS+ +T ++R+SS       Q+ N+ +P  +    +F  Q++ PSS+  +  
Sbjct: 1   MGFRFQNLNSIHKTLVSRISSHTHGTLLQTPNFPNPTTR----SFIPQSYDPSSIFPHNP 56

Query: 53  YLKIPIRWHLGHSHDHHQQLSGKD---AENIFRLGLASDVGLAAGKALTGYLSGSTAIIA 109
             ++P RWH GHSH+HH           E+IFRLGL +D+GL  GK LTGYLSGSTAIIA
Sbjct: 57  IFRVPRRWHFGHSHNHHDHQHHHSSEVGESIFRLGLFADIGLVTGKTLTGYLSGSTAIIA 116

Query: 110 DAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGH 143
           DAAHS SDVVLS +ALWSYK AKAPKDKEHPYGH
Sbjct: 117 DAAHSASDVVLSGVALWSYKVAKAPKDKEHPYGH 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496216|gb|AFK36174.1| unknown [Medicago truncatula]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/145 (58%), Positives = 98/145 (67%), Gaps = 8/145 (5%)

Query: 1   MGFRFRNINSMCRTYITRVSSQSNNYYHPIIQCQSLNFQFQNHPSSVCSNQHYLKIPIRW 60
           MGFRF N+N + RT ITR+S       H +   +S  F FQ+  S +       KI  RW
Sbjct: 1   MGFRFNNLNPIYRTCITRLSFSK----HLLPPPESPGF-FQSEASFISLQNPTFKISHRW 55

Query: 61  HLGHSHDHHQQLSG---KDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISD 117
           H GHSHDH         K+ ENIF+LGLA+D+ LA GKA TGYLSGSTAIIADAAHSISD
Sbjct: 56  HFGHSHDHDHHHPPKHLKEGENIFKLGLAADIALATGKAFTGYLSGSTAIIADAAHSISD 115

Query: 118 VVLSSIALWSYKAAKAPKDKEHPYG 142
           VVLS IAL S+K AKAP+DKEHPYG
Sbjct: 116 VVLSGIALLSFKVAKAPRDKEHPYG 140

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559272|ref|XP_002520656.1| cation efflux protein/ zinc transporter, putative [Ricinus communis] gi|223540041|gb|EEF41618.1| cation efflux protein/ zinc transporter, putative [Ricinus communis]

 Score =  128 bits (322), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 79/150 (52%), Positives = 94/150 (62%), Gaps = 24/150 (16%)

Query: 1   MGFRFRNINSMCRTYITRVSSQSNNYYHPIIQCQSLNFQFQNHPSSVCSNQHYLKIPIRW 60
           MGFR      +C++ +    S      H  +  QSLN    +  S+        + P RW
Sbjct: 1   MGFRI-----LCKSNLLATLSSR----HKTLLIQSLNSHLLDSSST--------RTPKRW 43

Query: 61  HLGHSHDHHQQL-------SGKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAH 113
           H GHSH H           SG+  ENIFRLGLA+D+GLAAGK LTGYLSGSTAIIADAAH
Sbjct: 44  HFGHSHSHSDHHHRHNHPASGEKGENIFRLGLAADIGLAAGKTLTGYLSGSTAIIADAAH 103

Query: 114 SISDVVLSSIALWSYKAAKAPKDKEHPYGH 143
           S+SDVVLS +ALWS+KA  AP+DKEHPYGH
Sbjct: 104 SVSDVVLSGVALWSFKAGNAPRDKEHPYGH 133

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3738295|gb|AAC63637.1| unknown protein [Arabidopsis thaliana]

 Score =  128 bits (322), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 62/87 (71%), Positives = 70/87 (80%), Gaps = 3/87 (3%)

Query: 59  RWHLGHSHDHHQQLS--GKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSIS 116
           RWH GH  DHHQQ    G++ E IFRLGL +D+GL+  KALTGYL GSTAIIADAAHS+S
Sbjct: 54  RWHFGHP-DHHQQYQKPGEEGEKIFRLGLTADIGLSVAKALTGYLCGSTAIIADAAHSVS 112

Query: 117 DVVLSSIALWSYKAAKAPKDKEHPYGH 143
           DVVLS +AL SY+AA  PKDKEHPYGH
Sbjct: 113 DVVLSGVALVSYRAANVPKDKEHPYGH 139

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690801|ref|NP_182304.2| metal tolerance protein C1 [Arabidopsis thaliana] gi|71151963|sp|Q8L725.1|MTPC1_ARATH RecName: Full=Metal tolerance protein C1; Short=AtMTPc1; AltName: Full=AtMTP6 gi|22655099|gb|AAM98140.1| unknown protein [Arabidopsis thaliana] gi|30387579|gb|AAP31955.1| At2g47830 [Arabidopsis thaliana] gi|330255799|gb|AEC10893.1| metal tolerance protein C1 [Arabidopsis thaliana]

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 62/87 (71%), Positives = 70/87 (80%), Gaps = 3/87 (3%)

Query: 59  RWHLGHSHDHHQQLS--GKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSIS 116
           RWH GH  DHHQQ    G++ E IFRLGL +D+GL+  KALTGYL GSTAIIADAAHS+S
Sbjct: 54  RWHFGHP-DHHQQYQKPGEEGEKIFRLGLTADIGLSVAKALTGYLCGSTAIIADAAHSVS 112

Query: 117 DVVLSSIALWSYKAAKAPKDKEHPYGH 143
           DVVLS +AL SY+AA  PKDKEHPYGH
Sbjct: 113 DVVLSGVALVSYRAANVPKDKEHPYGH 139

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690804|ref|NP_850480.1| metal tolerance protein C1 [Arabidopsis thaliana] gi|330255800|gb|AEC10894.1| metal tolerance protein C1 [Arabidopsis thaliana]

 Score =  128 bits (321), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 62/87 (71%), Positives = 70/87 (80%), Gaps = 3/87 (3%)

Query: 59  RWHLGHSHDHHQQLS--GKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSIS 116
           RWH GH  DHHQQ    G++ E IFRLGL +D+GL+  KALTGYL GSTAIIADAAHS+S
Sbjct: 54  RWHFGHP-DHHQQYQKPGEEGEKIFRLGLTADIGLSVAKALTGYLCGSTAIIADAAHSVS 112

Query: 117 DVVLSSIALWSYKAAKAPKDKEHPYGH 143
           DVVLS +AL SY+AA  PKDKEHPYGH
Sbjct: 113 DVVLSGVALVSYRAANVPKDKEHPYGH 139

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
TAIR|locus:2043328	471	AT2G47830 [Arabidopsis thalian	0.916	0.280	0.440	1.2e-22
TIGR_CMR|BA_4640	298	BA_4640 "cation efflux family	0.479	0.231	0.347	1.2e-05

TAIR|locus:2043328 AT2G47830 [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 63/143 (44%), Positives = 77/143 (53%)

Query:     3 FRFRNINSMCRTYITRVSSQSNNYYHPIIQCQSLNFQFQNHPSSVCSNQHYLKIPIRWHL 62
             F+  N   +CR+ I  +S +    Y P     S   +     SS  S +       RWH 
Sbjct:     6 FQILNPTRICRSTIYYMSCR----YLPSSSSSSSPLRV----SSSSSQKPSFDFSRRWHF 57

Query:    63 GHSHDHHQQLS--GKDAENIFRLGLASDVGLAAGKALTGYLSGSTXXXXXXXXXXXXVVL 120
             GH  DHHQQ    G++ E IFRLGL +D+GL+  KALTGYL GST            VVL
Sbjct:    58 GHP-DHHQQYQKPGEEGEKIFRLGLTADIGLSVAKALTGYLCGSTAIIADAAHSVSDVVL 116

Query:   121 SSIALWSYKAAKAPKDKEHPYGH 143
             S +AL SY+AA  PKDKEHPYGH
Sbjct:   117 SGVALVSYRAANVPKDKEHPYGH 139

GO:0006812 "cation transport" evidence=IEA;ISS

GO:0008324 "cation transmembrane transporter activity" evidence=IEA;ISS

GO:0015562 "efflux transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TIGR_CMR|BA_4640 BA_4640 "cation efflux family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 108 (43.1 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 24/69 (34%), Positives = 35/69 (50%)

Query:    75 KDAENIFRLGLASDVGLAAGKALTGYLSGSTXXXXXXXXXXXXVVLSSIALWSYKAAKAP 134
             K AE    +G+  ++ LA  KA+ GY+  S             V+ S   L+  +AAK P
Sbjct:     9 KQAEFGAIVGIVGNIILAIIKAVIGYIGNSKALLADAVHSASDVIGSLAVLFGLRAAKQP 68

Query:   135 KDKEHPYGH 143
              D++HPYGH
Sbjct:    69 PDEDHPYGH 77


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.133   0.421    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      144       132   0.00091  102 3  11 22  0.38    31
                                                     30  0.43    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  156 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.06u 0.21s 12.27t   Elapsed:  00:00:00
  Total cpu time:  12.06u 0.21s 12.27t   Elapsed:  00:00:00
  Start:  Fri May 10 23:30:47 2013   End:  Fri May 10 23:30:47 2013

GO:0006812 "cation transport" evidence=ISS

GO:0008324 "cation transmembrane transporter activity" evidence=ISS

GO:0015562 "efflux transmembrane transporter activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q10LJ2	MTP2_ORYSJ	No assigned EC number	0.7910	0.4652	0.1722	yes	no
Q8L725	MTPC1_ARATH	No assigned EC number	0.7126	0.5833	0.1783	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	144
COG0053	304	COG0053, MMT1, Predicted Co/Zn/Cd cation transport	1e-19
TIGR01297	268	TIGR01297, CDF, cation diffusion facilitator famil	4e-18
pfam01545	273	pfam01545, Cation_efflux, Cation efflux family	1e-13
COG1230	296	COG1230, CzcD, Co/Zn/Cd efflux system component [I	7e-10
COG3965	314	COG3965, COG3965, Predicted Co/Zn/Cd cation transp	4e-06
PRK03557	312	PRK03557, PRK03557, zinc transporter ZitB; Provisi	1e-04

>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]

 Score = 82.3 bits (204), Expect = 1e-19
 Identities = 29/69 (42%), Positives = 42/69 (60%)

Query: 75  KDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAP 134
           K       + LA ++ LA  K + G L+GS A++ADA HS+SD+V S I L   + +  P
Sbjct: 9   KLVRRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKP 68

Query: 135 KDKEHPYGH 143
            D++HPYGH
Sbjct: 69  PDRDHPYGH 77

Length = 304

>gnl|CDD|233348 TIGR01297, CDF, cation diffusion facilitator family transporter

 Score = 77.6 bits (192), Expect = 4e-18
 Identities = 26/55 (47%), Positives = 37/55 (67%)

Query: 90  GLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF 144
            L   K + G LSGS A++ADA HS+SDV  S+IAL + + ++ P D+ HP+GH 
Sbjct: 1   LLMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHG 55

This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence [Transport and binding proteins, Cations and iron carrying compounds]. Length = 268

>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 90  GLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF 144
            LA  K   G L+GS A++ADA HS+ D++ S +AL + + +  P DK HP+GH 
Sbjct: 1   LLALVKLAAGLLTGSLALLADALHSLIDLLSSLLALLALRLSSRPPDKRHPFGHG 55

Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are thought to be efflux pumps that remove these ions from cells. Length = 273

>gnl|CDD|224151 COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]

 Score = 55.0 bits (133), Expect = 7e-10
 Identities = 24/82 (29%), Positives = 38/82 (46%)

Query: 61  HLGHSHDHHQQLSGKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVL 120
              HSH H         E    + L  ++     + + G L+GS A++ADA H +SD + 
Sbjct: 4   AAHHSHGHDHAHDNPRNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALA 63

Query: 121 SSIALWSYKAAKAPKDKEHPYG 142
             +AL + K A+ P  K   +G
Sbjct: 64  LLLALIAIKLARRPATKRFTFG 85

Length = 296

>gnl|CDD|226474 COG3965, COG3965, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 80  IFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALW-SYKAAKAPKDKE 138
             R+ +A  V  AA   + G LSGS +II D  +S+ D  ++ ++L  S   AK P+D  
Sbjct: 21  YLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDAR 80

Query: 139 HPYG 142
            PYG
Sbjct: 81  FPYG 84

Length = 314

>gnl|CDD|235130 PRK03557, PRK03557, zinc transporter ZitB; Provisional

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 62  LGHSHDHHQQLSGKDAENIFRLGLASDV--GLAAGKALTGYLSGSTAIIADAAHSISDVV 119
           + HSH H      +D  N  RL  A  V  G    + + G+LSGS A++ADA H ++D  
Sbjct: 1   MAHSHSHTSSHLPEDN-NARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAA 59

Query: 120 LSSIALWSYKAAKAPKDKEHPYG 142
               AL + + ++ P    H +G
Sbjct: 60  ALLFALLAVQFSRRPPTIRHTFG 82

Length = 312

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
PRK03557	312	zinc transporter ZitB; Provisional	99.81
COG1230	296	CzcD Co/Zn/Cd efflux system component [Inorganic i	99.76
COG0053	304	MMT1 Predicted Co/Zn/Cd cation transporters [Inorg	99.73
PRK09509	299	fieF ferrous iron efflux protein F; Reviewed	99.68
KOG1485	412	consensus Mitochondrial Fe2+ transporter MMT1 and	99.57
TIGR01297	268	CDF cation diffusion facilitator family transporte	99.42
PF01545	284	Cation_efflux: Cation efflux family; InterPro: IPR	99.33
KOG1482	379	consensus Zn2+ transporter [Inorganic ion transpor	99.32
KOG1483	404	consensus Zn2+ transporter ZNT1 and related Cd2+/Z	99.13
KOG1484	354	consensus Putative Zn2+ transporter MSC2 (cation d	99.06
KOG2802	503	consensus Membrane protein HUEL (cation efflux sup	98.98
COG3965	314	Predicted Co/Zn/Cd cation transporters [Inorganic	98.87
COG0053	304	MMT1 Predicted Co/Zn/Cd cation transporters [Inorg	96.53
TIGR01297	268	CDF cation diffusion facilitator family transporte	95.51
PRK09509	299	fieF ferrous iron efflux protein F; Reviewed	95.18
PRK03557	312	zinc transporter ZitB; Provisional	81.7

>PRK03557 zinc transporter ZitB; Provisional

Probab=99.81  E-value=6.6e-20  Score=153.92  Aligned_cols=71  Identities=24%  Similarity=0.438  Sum_probs=67.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260           74 GKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF  144 (144)
Q Consensus        74 ~~~~~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~  144 (144)
                      ++..+|++++++++|++++++|+++|+++||+||++||+||++|+++.+++++++++++||+|++|||||+
T Consensus        14 ~~~~~r~~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~   84 (312)
T PRK03557         14 EDNNARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWL   84 (312)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchH
Confidence            34467899999999999999999999999999999999999999999999999999999999999999996

>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]

Probab=99.76  E-value=2.1e-18  Score=145.69  Aligned_cols=79  Identities=28%  Similarity=0.410  Sum_probs=72.0

Q ss_pred             CCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260           66 HDHHQQLSGKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF  144 (144)
Q Consensus        66 h~h~~~~~~~~~~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~  144 (144)
                      |+|+|.+...+.+|++++++++|++++++|+++|+++||+||+||++|+++|+++.+++++++++++||++++|||||+
T Consensus         9 h~h~~~~~~~~~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~   87 (296)
T COG1230           9 HGHDHAHDNPRNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYK   87 (296)
T ss_pred             cCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHh
Confidence            3333334456788999999999999999999999999999999999999999999999999999999999999999995

>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]

Probab=99.73  E-value=1e-17  Score=141.17  Aligned_cols=72  Identities=40%  Similarity=0.579  Sum_probs=69.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260           73 SGKDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF  144 (144)
Q Consensus        73 ~~~~~~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~  144 (144)
                      +.+..++..++++++|++++++|+++|+++||.||+|||+||++|++++++.++++++++||||++||||||
T Consensus         7 ~~~~~~~~~~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~   78 (304)
T COG0053           7 RLKLVRRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHG   78 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCch
Confidence            356788999999999999999999999999999999999999999999999999999999999999999996

>PRK09509 fieF ferrous iron efflux protein F; Reviewed

Probab=99.68  E-value=1.8e-16  Score=131.83  Aligned_cols=70  Identities=23%  Similarity=0.253  Sum_probs=67.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260           75 KDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF  144 (144)
Q Consensus        75 ~~~~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~  144 (144)
                      +..+|..++++++|++++++|+++|+++||+||++||+||+.|+++.++++++.++++||+|++|||||+
T Consensus         7 ~~~~~~~~~~~~~n~~l~i~k~~~g~~sgS~allaDa~hsl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~   76 (299)
T PRK09509          7 RLVSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHG   76 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccH
Confidence            3567899999999999999999999999999999999999999999999999999999999999999996

>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]

Probab=99.57  E-value=9e-15  Score=127.96  Aligned_cols=68  Identities=43%  Similarity=0.573  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260           77 AENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF  144 (144)
Q Consensus        77 ~~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~  144 (144)
                      ++++.++++++|++++++|+++|+++||+||+||++|++.|+++.++.++.++.++||++.+||+|++
T Consensus       113 ~~~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsavdSl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~  180 (412)
T KOG1485|consen  113 ERRAAWIGLAANIGLAVAKVVASYLSGSMAIIASAVDSLSDLVSGFVLLFSLRAAKKKPTYEYPRGRG  180 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhCCCCCC
Confidence            47889999999999999999999999999999999999999999999999999999999999999986

>TIGR01297 CDF cation diffusion facilitator family transporter

Probab=99.42  E-value=1.1e-13  Score=111.78  Aligned_cols=54  Identities=48%  Similarity=0.720  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260           91 LAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF  144 (144)
Q Consensus        91 l~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~  144 (144)
                      ++++|+++|+++||.||++||+|++.|+++.++.++++++++||||++|||||+
T Consensus         2 l~~~k~~~g~~~~S~allada~~s~~D~~~~~~~l~~~~~~~~~~d~~~pyG~~   55 (268)
T TIGR01297         2 LMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHG   55 (268)
T ss_pred             EEEeehHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchH
Confidence            467899999999999999999999999999999999999999999999999996

This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.

>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt

Probab=99.33  E-value=1.4e-13  Score=111.51  Aligned_cols=64  Identities=33%  Similarity=0.527  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260           81 FRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF  144 (144)
Q Consensus        81 l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~  144 (144)
                      ++++++++++++++|+++|+++||.++++|++|++.|+++.++++++.+.++||+|++|||||+
T Consensus         1 L~i~~~~~~~~~~~~~~~~~~t~S~al~~d~~~sl~d~~~~~~~l~~~~~~~~~~~~~~pfG~~   64 (284)
T PF01545_consen    1 LIISLILNLILAVVKIIAGIITGSLALLADGLHSLADAISLLISLFALRIASKPPDKRYPFGYG   64 (284)
T ss_dssp             -HHHHHHHCCTHHCTTCSS-SSSSS---SCCCHHHHHHHHHHHHHHHHHHHTSS-SSSSSSSST
T ss_pred             CeeeHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchh
Confidence            5789999999999999999999999999999999999999999999999999999999999996

These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.

>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]

Probab=99.32  E-value=2.7e-12  Score=111.35  Aligned_cols=69  Identities=32%  Similarity=0.430  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260           76 DAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF  144 (144)
Q Consensus        76 ~~~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~  144 (144)
                      ..+|.++++.++++++++.|+++|+.+||+|+++||.|.++|+.+..++++++|+++||++++.+|||.
T Consensus        70 ~~~r~L~~~~~l~l~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~  138 (379)
T KOG1482|consen   70 AAERKLSIAAALCLVFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFH  138 (379)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHhCCeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceeccee
Confidence            357899999999999999999999999999999999999999999999999999999999999999984

>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]

Probab=99.13  E-value=4.1e-11  Score=104.57  Aligned_cols=66  Identities=27%  Similarity=0.384  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 032260           78 ENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGH  143 (144)
Q Consensus        78 ~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~  143 (144)
                      +..+...++++++|+++|++.|++++|+||++|++|+++|++++++++++++.+++.++.++||||
T Consensus         8 ~~rli~~l~ltiiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw   73 (404)
T KOG1483|consen    8 SLRLISVLVLTIIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGW   73 (404)
T ss_pred             ccceeehHHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcch
Confidence            456777889999999999999999999999999999999999999999999999997889999998

>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]

Probab=99.06  E-value=4.3e-10  Score=96.82  Aligned_cols=68  Identities=22%  Similarity=0.210  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260           77 AENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF  144 (144)
Q Consensus        77 ~~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~  144 (144)
                      ..|.+.+.+++|+.++.+|++.|.+++|+.|++|++|++.|+.++.+.+++.+++++|++.+|+|||+
T Consensus        33 ~sr~if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~  100 (354)
T KOG1484|consen   33 DSRSIFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYG  100 (354)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchh
Confidence            34678888899999999999999999999999999999999999999999999999999999999984

>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]

Probab=98.98  E-value=7.5e-10  Score=97.02  Aligned_cols=67  Identities=19%  Similarity=0.176  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260           78 ENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF  144 (144)
Q Consensus        78 ~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~  144 (144)
                      .|...+++++|++-+..|+.+++.|||-+|+|+++||++|....++..++++.+.+.||..|||||+
T Consensus       206 ~rvVatAi~iN~l~~~~Kfg~w~~tgShsmfAEaIHS~aD~~NQ~lLa~Gis~S~q~PD~lhPYGYs  272 (503)
T KOG2802|consen  206 GRVVATAICINGLNCFFKFGAWIYTGSHSMFAEAIHSLADTCNQLLLALGISKSVQTPDPLHPYGYS  272 (503)
T ss_pred             CceehhHHHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCccc
Confidence            4567789999999999999999999999999999999999999999999999999999999999995

>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]

Probab=98.87  E-value=4e-09  Score=88.83  Aligned_cols=70  Identities=30%  Similarity=0.459  Sum_probs=64.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCCCCCCCCCC
Q 032260           75 KDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAK-APKDKEHPYGHF  144 (144)
Q Consensus        75 ~~~~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~-kp~d~~~pfG~~  144 (144)
                      .-+++.+.++++.+++++...++.|+++||.+++.||++|+.|++..+++++..++.. +|.|.|||||+|
T Consensus        16 ~~eq~~L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~Gfw   86 (314)
T COG3965          16 SNEQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFW   86 (314)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEEeccHHHHHHHHHHHHHHHHHHHhccCCCccccCcchh
Confidence            3467899999999999999999999999999999999999999999999999888887 677779999986

>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]

Probab=96.53  E-value=0.01  Score=50.32  Aligned_cols=51  Identities=27%  Similarity=0.211  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032260           79 NIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYK  129 (144)
Q Consensus        79 r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~  129 (144)
                      -...++++++..+...+.-.|--+||.+|.||+.|..+|+++++..++++-
T Consensus       121 ~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~  171 (304)
T COG0053         121 GVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLL  171 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            455667777888888888899999999999999999999999999988876

>TIGR01297 CDF cation diffusion facilitator family transporter

Probab=95.51  E-value=0.048  Score=43.92  Aligned_cols=54  Identities=28%  Similarity=0.127  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032260           78 ENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAA  131 (144)
Q Consensus        78 ~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a  131 (144)
                      -....+++++|+++...+.-.|.-.+|.++.+|+.|.+.|+++++..+++...+
T Consensus        97 ~~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~  150 (268)
T TIGR01297        97 LIVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLI  150 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667788888888888888889999999999999999999998888877655

This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.

>PRK09509 fieF ferrous iron efflux protein F; Reviewed

Probab=95.18  E-value=0.11  Score=43.30  Aligned_cols=53  Identities=21%  Similarity=0.137  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Q 032260           80 IFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAK  132 (144)
Q Consensus        80 ~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~  132 (144)
                      ...+++++|+++...+...+-.++|.++.+|+.|...|+++++..++++.++.
T Consensus       120 ~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~  172 (299)
T PRK09509        120 VTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSW  172 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667777887777777788889999999999999999999988888877653

>PRK03557 zinc transporter ZitB; Provisional

Probab=81.70  E-value=7.6  Score=32.75  Aligned_cols=30  Identities=20%  Similarity=0.111  Sum_probs=25.8

Q ss_pred             hchHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 032260          102 SGSTAIIADAAHSISDVVLSSIALWSYKAA  131 (144)
Q Consensus       102 sgSlALlADA~Hsl~Dv~a~~v~l~al~~a  131 (144)
                      .+|.++.+|+.|.+.|+++++..+++..+.
T Consensus       148 ~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~  177 (312)
T PRK03557        148 EKNLNVRAAALHVLGDLLGSVGAIIAALII  177 (312)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999998887776554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	144
3h90_A	283	Ferrous-iron efflux pump FIEF; membrane protein, z	2e-19

>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A Length = 283

 Score = 80.7 bits (200), Expect = 2e-19
 Identities = 16/62 (25%), Positives = 25/62 (40%)

Query: 82  RLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPY 141
               A    L   K    + +GS +I+A    S+ D+  S   L   + +  P D  H +
Sbjct: 7   IAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSF 66

Query: 142 GH 143
           GH
Sbjct: 67  GH 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	144
3h90_A	283	Ferrous-iron efflux pump FIEF; membrane protein, z	99.63
3j1z_P	306	YIIP, cation efflux family protein; zinc transport	99.62
3h90_A	283	Ferrous-iron efflux pump FIEF; membrane protein, z	83.63

>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A

Probab=99.63  E-value=2.6e-17  Score=133.95  Aligned_cols=67  Identities=24%  Similarity=0.247  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260           78 ENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF  144 (144)
Q Consensus        78 ~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~  144 (144)
                      +|.+++++++|++++++|+++|+++||+||++||+||++|+++.+++++++++++||+|++|||||+
T Consensus         3 ~r~~~~~~~~n~~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~   69 (283)
T 3h90_A            3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHG   69 (283)
T ss_dssp             CTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcch
Confidence            5789999999999999999999999999999999999999999999999999999999999999996

>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}

Probab=99.62  E-value=4.3e-17  Score=134.81  Aligned_cols=68  Identities=29%  Similarity=0.384  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260           77 AENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF  144 (144)
Q Consensus        77 ~~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~  144 (144)
                      .|++.++++++|++++++|+++|+++||+||+|||+||++|+++.+++++++++++||+|++|||||+
T Consensus        11 vr~a~~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~   78 (306)
T 3j1z_P           11 VKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHG   78 (306)
T ss_dssp             SSTTHHHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCchh
Confidence            56788999999999999999999999999999999999999999999999999999999999999996

>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A

Probab=83.63  E-value=0.28  Score=39.09  Aligned_cols=50  Identities=22%  Similarity=0.167  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHH
Q 032260           79 NIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSY  128 (144)
Q Consensus        79 r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al  128 (144)
                      -...+++++|.+++..+.-.+--.+|.++.+|+.|.++|+++++..++++
T Consensus       112 ~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~vli~~  161 (283)
T 3h90_A          112 IVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLAL  161 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSCSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667778888887777777778899999999999999999876655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	144
d2qfia2	204	f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {	7e-11

>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]} Length = 204

class: Membrane and cell surface proteins and peptides
fold: Cation efflux protein transmembrane domain-like
superfamily: Cation efflux protein transmembrane domain-like
family: Cation efflux protein transmembrane domain-like
domain: Ferrous-iron efflux pump FieF
species: Escherichia coli [TaxId: 562]

 Score = 55.5 bits (133), Expect = 7e-11
 Identities = 16/62 (25%), Positives = 25/62 (40%)

Query: 83  LGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYG 142
              A    L   K    + +GS +I+A    S+ D+  S   L   + +  P D  H +G
Sbjct: 11  AATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFG 70

Query: 143 HF 144
           H 
Sbjct: 71  HG 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	144
d2qfia2	204	Ferrous-iron efflux pump FieF {Escherichia coli [T	99.55

>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Cation efflux protein transmembrane domain-like
superfamily: Cation efflux protein transmembrane domain-like
family: Cation efflux protein transmembrane domain-like
domain: Ferrous-iron efflux pump FieF
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=4.5e-18  Score=130.86  Aligned_cols=70  Identities=23%  Similarity=0.231  Sum_probs=67.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 032260           75 KDAENIFRLGLASDVGLAAGKALTGYLSGSTAIIADAAHSISDVVLSSIALWSYKAAKAPKDKEHPYGHF  144 (144)
Q Consensus        75 ~~~~r~l~isl~inlil~i~eii~G~~sgSlALlADA~Hsl~Dv~a~~v~l~al~~a~kp~d~~~pfG~~  144 (144)
                      +..+|.+++++++|++++++|+++|+++||+||++|++|++.|+++.++.+++.+.++||+|++|||||+
T Consensus         3 r~~~r~~~~~~~~n~~l~i~~~~~~~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~   72 (204)
T d2qfia2           3 RLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHG   72 (204)
T ss_dssp             SSSSTTSHHHHGGGTTTTTBTTBCCCCTTSSCCCCCCCTTHHHHHHHHHHHHHHTTSSSSCSTTSSCSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccCCcchh
Confidence            4567899999999999999999999999999999999999999999999999999999999999999996