Citrus Sinensis ID: 032266

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MDNIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAVRLEQMSKAVRWLVIELQHGGTGGSSAHAHPSVPFDARFPEDAGQ
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MDNIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEEFVESVKQRIGseclvdeatgslagksgqaattglppisAVRLEQMSKAVRWLVIELqhggtggssahahpsvpfdarfpedagq
Flexible Loop (DISEMBL)
MDNIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEEFVESVKQRIGSECLVDEATgslagksgqaattgLPPISAVRLEQMSKAVRWLVIELQHGGtggssahahpsvpfDARFPEDAGQ
Low Complexity Region (SEG)
MDNIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAVRLEQMSKAVRWLVIELQhggtggssahahPSVPFDARFPEDAGQ
Disordered region (IsUnstruct)
******ALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEEFVESVKQRIGSECLVDEA*****************PISAVRLEQMSKAVRWLVIELQH**************************
Disordered Region (DISOPRED)
**NIV**LSSAYKEFVAAAANVL****************ALENFKQRWELFRVACDQAEEFVESVKQRIGSECLVD*******************PISAVRLEQMSKAVRWLVIE*****************************
Disordered Region (DISEMBL)
MDNIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLA********TGLPPISAVRLEQMSKAVRWLVIELQHG********AHPSVPFDARFPEDAGQ
Disordered Region (DISPRO)
*DNIVDALSSAYKEFVAAAANVLEAKELS**QKTAATDAALENFKQRWELFRVACDQAEEFVESVKQRIGSECLVDE****************LPPISAVRLEQMSKAVRWLVIELQH**************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDNIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAVRLEQMSKAVRWLVIELQHGGTGGSSAHAHPSVPFDARFPEDAGQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
Q84VW5	151	Mediator of RNA polymeras	yes	no	0.993	0.947	0.664	6e-48

>sp|Q84VW5|MED32_ARATH Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana GN=MED32 PE=1 SV=1

 Score =  189 bits (479), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 101/152 (66%), Positives = 116/152 (76%), Gaps = 9/152 (5%)

Query: 1   MDNIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEE 60
           MDNIVD+L+ AY++FV A+A VLE+KE +  QK   TD ALENFK++WELFRVACDQAEE
Sbjct: 1   MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATG---SLAGKSGQAATTG----LPPISAVRLEQMSKAVRWLV 113
           FVESVKQRIGSECLVDEATG   + AG    AA TG    LPPISAVRLEQMS+AVRWLV
Sbjct: 61  FVESVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLV 120

Query: 114 IELQHG-GTGGSSAHAHPSVPFDARFPEDAGQ 144
           +ELQ G G    S H+  S  FD+RF ED+ Q
Sbjct: 121 LELQRGSGVAPGSVHSS-STGFDSRFSEDSTQ 151

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors (By similarity).
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
147800088	145	hypothetical protein VITISV_032482 [Viti	1.0	0.993	0.862	5e-65
359475280	145	PREDICTED: uncharacterized protein LOC10	1.0	0.993	0.855	3e-64
356508220	146	PREDICTED: uncharacterized protein LOC10	1.0	0.986	0.794	4e-59
351726142	146	uncharacterized protein LOC100306169 [Gl	1.0	0.986	0.780	1e-57
449462252	146	PREDICTED: mediator of RNA polymerase II	1.0	0.986	0.821	1e-56
224077816	146	predicted protein [Populus trichocarpa]	1.0	0.986	0.794	2e-56
357467207	148	hypothetical protein MTR_3g116260 [Medic	1.0	0.972	0.75	1e-52
145335411	151	uncharacterized protein [Arabidopsis tha	0.993	0.947	0.664	4e-46
297849548	414	predicted protein [Arabidopsis lyrata su	0.951	0.330	0.643	5e-43
4835781	417	F25C20.9 [Arabidopsis thaliana]	0.944	0.326	0.652	1e-42

>gi|147800088|emb|CAN70933.1| hypothetical protein VITISV_032482 [Vitis vinifera]

 Score =  251 bits (642), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 125/145 (86%), Positives = 133/145 (91%), Gaps = 1/145 (0%)

Query: 1   MDNIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEE 60
           MDNIVDAL++AY+EFV+AAA+VLEAKE S AQKTAATDAALENFKQRWELFRVACDQAEE
Sbjct: 1   MDNIVDALNNAYQEFVSAAASVLEAKESSGAQKTAATDAALENFKQRWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAVRLEQMSKAVRWLVIELQHG- 119
           FVESVKQRIGSECLVDEATGS+AGK GQA TTGLPPISAVRLEQMSKAVRWLVIELQHG 
Sbjct: 61  FVESVKQRIGSECLVDEATGSVAGKPGQAVTTGLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 120 GTGGSSAHAHPSVPFDARFPEDAGQ 144
           GT G  +H+H S PFDARF EDA Q
Sbjct: 121 GTAGGPSHSHVSAPFDARFSEDAAQ 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475280|ref|XP_003631633.1| PREDICTED: uncharacterized protein LOC100852787 [Vitis vinifera]

 Score =  249 bits (636), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 124/145 (85%), Positives = 132/145 (91%), Gaps = 1/145 (0%)

Query: 1   MDNIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEE 60
           MDNIVDAL++AY+EFV+AAA+VLEAKE S AQKTAATDAALENFKQRWELFRVACDQAEE
Sbjct: 1   MDNIVDALNNAYQEFVSAAASVLEAKESSGAQKTAATDAALENFKQRWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAVRLEQMSKAVRWLVIELQHG- 119
           FVESVKQRIGSECLVDEATGS+AGK GQA T GLPPISAVRLEQMSKAVRWLVIELQHG 
Sbjct: 61  FVESVKQRIGSECLVDEATGSVAGKPGQAVTAGLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 120 GTGGSSAHAHPSVPFDARFPEDAGQ 144
           GT G  +H+H S PFDARF EDA Q
Sbjct: 121 GTAGGPSHSHVSAPFDARFSEDAAQ 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508220|ref|XP_003522857.1| PREDICTED: uncharacterized protein LOC100807018 isoform 1 [Glycine max] gi|356508222|ref|XP_003522858.1| PREDICTED: uncharacterized protein LOC100807018 isoform 2 [Glycine max] gi|356508224|ref|XP_003522859.1| PREDICTED: uncharacterized protein LOC100807018 isoform 3 [Glycine max]

 Score =  232 bits (591), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 116/146 (79%), Positives = 126/146 (86%), Gaps = 2/146 (1%)

Query: 1   MDNIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEE 60
           MD+IVD+L++AY++FVAAAANVLEAKE + + KT ATD ALENFKQ+WELFRVACDQAEE
Sbjct: 1   MDSIVDSLNNAYQDFVAAAANVLEAKENAGSIKTMATDTALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAVRLEQMSKAVRWLVIELQHGG 120
           FVESVKQRIGSECLVDEAT  +AGK GQA  TGLPPISAVRLEQMSKAVRWLVIELQHG 
Sbjct: 61  FVESVKQRIGSECLVDEATRPVAGKPGQATMTGLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 121 TGGS--SAHAHPSVPFDARFPEDAGQ 144
             GS  SA  HPS PFDARF EDA Q
Sbjct: 121 GAGSANSALTHPSAPFDARFSEDAAQ 146

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726142|ref|NP_001238652.1| uncharacterized protein LOC100306169 [Glycine max] gi|255627755|gb|ACU14222.1| unknown [Glycine max] gi|255633285|gb|ACU16999.1| unknown [Glycine max]

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 114/146 (78%), Positives = 124/146 (84%), Gaps = 2/146 (1%)

Query: 1   MDNIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEE 60
           MD+IVD+L++AY++FV AAANVLEAKE + + KT ATD ALENFKQ+WELFRVACDQAEE
Sbjct: 1   MDSIVDSLNNAYQDFVVAAANVLEAKENAGSIKTTATDTALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAVRLEQMSKAVRWLVIELQHGG 120
           FVESVKQRIGSECLVDEAT  +AGK GQA  TGLPPISAVRLEQMSKAVRWLVIELQHG 
Sbjct: 61  FVESVKQRIGSECLVDEATRPVAGKPGQATMTGLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 121 TGGS--SAHAHPSVPFDARFPEDAGQ 144
             GS  SA  HPS  FDARF EDA Q
Sbjct: 121 GAGSANSALTHPSAQFDARFSEDAAQ 146

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462252|ref|XP_004148855.1| PREDICTED: mediator of RNA polymerase II transcription subunit 32-like [Cucumis sativus] gi|449515353|ref|XP_004164714.1| PREDICTED: mediator of RNA polymerase II transcription subunit 32-like [Cucumis sativus]

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 120/146 (82%), Positives = 130/146 (89%), Gaps = 2/146 (1%)

Query: 1   MDNIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEE 60
           MD++VD+L++AY+EFVA AANVLEA E S AQKTAATDAALENFKQ+WELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAVRLEQMSKAVRWLVIELQ--H 118
           FVESVKQRIGSECLVDEATGSLAGKSGQ+ATT LPPISAVRLEQMSKAVRWLVIELQ   
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 119 GGTGGSSAHAHPSVPFDARFPEDAGQ 144
           G    +SAH+H S PFDARF EDA Q
Sbjct: 121 GAAASASAHSHQSAPFDARFTEDATQ 146

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077816|ref|XP_002305420.1| predicted protein [Populus trichocarpa] gi|222848384|gb|EEE85931.1| predicted protein [Populus trichocarpa]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 116/146 (79%), Positives = 130/146 (89%), Gaps = 2/146 (1%)

Query: 1   MDNIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEE 60
           MD+IVD+L++AY++FV AAANVLEAKELS  QKTAATD ALENFKQ+WELFRV+CDQAEE
Sbjct: 1   MDSIVDSLNNAYQDFVGAAANVLEAKELSGGQKTAATDVALENFKQKWELFRVSCDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAVRLEQMSKAVRWLVIELQ--H 118
           FVESVKQR+GSECLVDEATGS++G+SGQ   TGLPPISAVRLEQMSKAVRWLVIELQ   
Sbjct: 61  FVESVKQRVGSECLVDEATGSVSGRSGQGGVTGLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 119 GGTGGSSAHAHPSVPFDARFPEDAGQ 144
           G  GG++ HAHPS PFDARF EDA Q
Sbjct: 121 GAAGGAAGHAHPSAPFDARFSEDAAQ 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467207|ref|XP_003603888.1| hypothetical protein MTR_3g116260 [Medicago truncatula] gi|355492936|gb|AES74139.1| hypothetical protein MTR_3g116260 [Medicago truncatula] gi|388497008|gb|AFK36570.1| unknown [Medicago truncatula]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/148 (75%), Positives = 123/148 (83%), Gaps = 4/148 (2%)

Query: 1   MDNIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEE 60
           MD++VD+L+SAY +F+AAAA VLEA+E S A K  ATD ALE+FKQ+WELFRVACDQAEE
Sbjct: 1   MDSVVDSLNSAYLDFIAAAATVLEARETSTALKNIATDTALESFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAATTGLPPISAVRLEQMSKAVRWLVIELQH-- 118
           +VESVKQRIGSECLVDEATG +AGK GQA  TGLPPISAVRLEQMSKAVRWLVIELQH  
Sbjct: 61  YVESVKQRIGSECLVDEATGHVAGKPGQATMTGLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 119 --GGTGGSSAHAHPSVPFDARFPEDAGQ 144
                  SSA +HPS PFDARF EDA Q
Sbjct: 121 GGPAGSSSSALSHPSAPFDARFSEDAAQ 148

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145335411|ref|NP_172641.2| uncharacterized protein [Arabidopsis thaliana] gi|75148615|sp|Q84VW5.1|MED32_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 32; AltName: Full=Mediator of RNA polymerase II transcription subunit 2 gi|28466841|gb|AAO44029.1| At1g11760 [Arabidopsis thaliana] gi|110736112|dbj|BAF00028.1| hypothetical protein [Arabidopsis thaliana] gi|332190660|gb|AEE28781.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 101/152 (66%), Positives = 116/152 (76%), Gaps = 9/152 (5%)

Query: 1   MDNIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEE 60
           MDNIVD+L+ AY++FV A+A VLE+KE +  QK   TD ALENFK++WELFRVACDQAEE
Sbjct: 1   MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATG---SLAGKSGQAATTG----LPPISAVRLEQMSKAVRWLV 113
           FVESVKQRIGSECLVDEATG   + AG    AA TG    LPPISAVRLEQMS+AVRWLV
Sbjct: 61  FVESVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLV 120

Query: 114 IELQHG-GTGGSSAHAHPSVPFDARFPEDAGQ 144
           +ELQ G G    S H+  S  FD+RF ED+ Q
Sbjct: 121 LELQRGSGVAPGSVHSS-STGFDSRFSEDSTQ 151

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849548|ref|XP_002892655.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297338497|gb|EFH68914.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  179 bits (453), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 94/146 (64%), Positives = 111/146 (76%), Gaps = 9/146 (6%)

Query: 1   MDNIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEE 60
           MDNIVD+L+ AY++FV A+A VLE+KE +  QK + TDAALENFK++WELFRVACDQAEE
Sbjct: 1   MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKASLTDAALENFKEKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATG--SLAGKSG------QAATTGLPPISAVRLEQMSKAVRWL 112
           FVESVKQRIGSECLVDEATG  + +G SG        A T LPPISAVRLEQMS+AVRWL
Sbjct: 61  FVESVKQRIGSECLVDEATGLTTASGNSGGQAPAATGAATSLPPISAVRLEQMSRAVRWL 120

Query: 113 VIELQHG-GTGGSSAHAHPSVPFDAR 137
           V+ELQ G G    S H+  +   D+ 
Sbjct: 121 VLELQRGSGAAPGSVHSSSTGYMDSN 146

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4835781|gb|AAD30247.1|AC007296_8 F25C20.9 [Arabidopsis thaliana]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/144 (65%), Positives = 109/144 (75%), Gaps = 8/144 (5%)

Query: 1   MDNIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEE 60
           MDNIVD+L+ AY++FV A+A VLE+KE +  QK   TD ALENFK++WELFRVACDQAEE
Sbjct: 23  MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEE 82

Query: 61  FVESVKQRIGSECLVDEATG---SLAGKSGQAATTG----LPPISAVRLEQMSKAVRWLV 113
           FVESVKQRIGSECLVDEATG   + AG    AA TG    LPPISAVRLEQMS+AVRWLV
Sbjct: 83  FVESVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLV 142

Query: 114 IELQHG-GTGGSSAHAHPSVPFDA 136
           +ELQ G G    S H+  +   D+
Sbjct: 143 LELQRGSGVAPGSVHSSSTGYMDS 166

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
TAIR|locus:2027377	151	MED32 "AT1G11760" [Arabidopsis	1.0	0.953	0.642	5.7e-43

TAIR|locus:2027377 MED32 "AT1G11760" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 97/151 (64%), Positives = 111/151 (73%)

Query:     1 MDNIVDALSSAYKEFVAAAANVLEAKELSVAQKTAATDAALENFKQRWELFRVACDQAEE 60
             MDNIVD+L+ AY++FV A+A VLE+KE +  QK   TD ALENFK++WELFRVACDQAEE
Sbjct:     1 MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEE 60

Query:    61 FVESVKQRIGSECLVDEATG---SLAGKSGQAATTG----LPPISAVRLEQMSKAVRWLV 113
             FVESVKQRIGSECLVDEATG   + AG    AA TG    LPPISAVRLEQMS+AVRWLV
Sbjct:    61 FVESVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLV 120

Query:   114 IELQXXXXXXXXXXXXPSVPFDARFPEDAGQ 144
             +ELQ             S  FD+RF ED+ Q
Sbjct:   121 LELQRGSGVAPGSVHSSSTGFDSRFSEDSTQ 151


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.127   0.352    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      144       132   0.00091  102 3  11 23  0.42    31
                                                     30  0.43    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  555 (59 KB)
  Total size of DFA:  119 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.11u 0.12s 13.23t   Elapsed:  00:00:00
  Total cpu time:  13.11u 0.12s 13.23t   Elapsed:  00:00:00
  Start:  Fri May 10 23:40:41 2013   End:  Fri May 10 23:40:41 2013

GO:0016592 "mediator complex" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84VW5	MED32_ARATH	No assigned EC number	0.6644	0.9930	0.9470	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
PF11568	148	Med29: Mediator complex subunit 29; InterPro: IPR0	96.18

>PF11568 Med29: Mediator complex subunit 29; InterPro: IPR021018 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=96.18  E-value=0.01  Score=46.93  Aligned_cols=68  Identities=25%  Similarity=0.445  Sum_probs=55.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHHHHHHHHHHhhhchHHHHHHHHHhhcccccc
Q 032266            3 NIVDALSSAYKEFVAAAANVLEAKELSVAQ-KTAATDAALENFKQRWELFRVACDQAEEFVESVKQRIGSECLV   75 (144)
Q Consensus         3 s~Vd~l~~AY~~fv~AaaavleAke~~gg~-ktaaTDaAle~fkqr~eLF~vACD~AeelVeSvrqRIgSeclV   75 (144)
                      ++|-.|.+++..++..||-.|.-+...+.. +..-+|.-...|...+|-|+.-|||-|     +--|.+.||+-
T Consensus        12 ~Lv~~LreSl~~~~k~AA~~l~qn~~~D~g~~~~~~d~~~~RFdK~lEeFysiCDQIE-----l~L~ta~ec~~   80 (148)
T PF11568_consen   12 SLVGPLRESLSNLMKTAAQNLQQNSLVDNGTRGKSSDEPVPRFDKNLEEFYSICDQIE-----LHLKTAIECLS   80 (148)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence            467889999999999999999987666433 335577788999999999999999998     55677778865

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med29, along with Med11 and Med28, in mammals, is part of the core head-region of the complex. Med29 is the apparent orthologue of the Drosophila melanogaster Intersex protein, which interacts directly with, and functions as a transcriptional coactivator for, the DNA-binding transcription factor Doublesex, so it is likely that mammalian Med29 serves as a target for one or more DNA-binding transcriptional activators []. ; GO: 0016592 mediator complex

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	144
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 3e-06
 Identities = 31/181 (17%), Positives = 53/181 (29%), Gaps = 48/181 (26%)

Query: 1   MDNIVDALSSAYKE----FVAAAANVLEAKELSVAQKTAATDAALENF-------KQRWE 49
           MD         YK+    F  A  +  + K++    K+  +   +++             
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 50  LFRVACDQAEE----FVESVKQ--------RIGSEC--------LVDEATGSLAGKSGQA 89
           LF     + EE    FVE V +         I +E         +  E    L     Q 
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQV 125

Query: 90  ATTGLPPISAVRLEQMSKAVRWLVIELQ-------HG--GTGGSS--AHAHPSVPFDARF 138
                   +  RL+   K  + L +EL+        G  G+G +        S     + 
Sbjct: 126 ----FAKYNVSRLQPYLKLRQAL-LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 139 P 139
            
Sbjct: 181 D 181

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00