Citrus Sinensis ID: 032285

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MGRFGLCVILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHccccccccEEEEEEEccccccccccHHHHccccccccccccccccccccEEEEcccccccccccccEEEEEEcccccEEEEEEEEccccccccccHHHHHHcccccccEEEEEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHccccccHEEEEEcccccccccHHHHHcccEEEEcccccccccccccEEEEEccccccEEEEEEEEccccccccccHHHHHEEccccccccccEEEEEEEEEcccc
Coil and Loop (DISEMBL)
MGRFGLCVILSVCLLVAAASAQSASNVRAtyhlyhpeqigwDLTAASAFCATwdankplawrqkygwtafchsggpigqaacgrclrvtnsgtgAQQIVRIVDQcanggldldegvfkkldtngigyqqGFLTVSYEFVNCND
Flexible Loop (DISEMBL)
MGRFGLCVILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND
Low Complexity Region (SEG)
MGRFGlcvilsvcllvaaasaqsasnvraTYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND
Disordered region (IsUnstruct)
***FGLCVILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNC**
Disordered Region (DISOPRED)
***FGLCVILSVCLLVA********NVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND
Disordered Region (DISEMBL)
MGRFGLCVILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND
Disordered Region (DISPRO)
*GRFGLCVILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGRFGLCVILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
P29063	147	Pathogenesis-related prot	N/A	no	1.0	0.972	0.708	8e-55
P32045	143	Pathogenesis-related prot	N/A	no	0.951	0.951	0.693	7e-54
P29062	147	Pathogenesis-related prot	N/A	no	1.0	0.972	0.715	1e-53
P09762	211	Wound-induced protein WIN	N/A	no	0.846	0.573	0.685	4e-47
P09761	200	Wound-induced protein WIN	N/A	no	0.846	0.605	0.669	3e-46
P28814	125	Barwin OS=Hordeum vulgare	N/A	no	0.853	0.976	0.704	1e-45
P43082	212	Hevein-like preproprotein	yes	no	0.867	0.584	0.645	1e-44
P02877	204	Pro-hevein OS=Hevea brasi	N/A	no	0.846	0.593	0.669	1e-44
O64393	148	Wheatwin-2 OS=Triticum ae	N/A	no	0.825	0.797	0.710	3e-44
O64392	146	Wheatwin-1 OS=Triticum ae	N/A	no	1.0	0.979	0.636	4e-44

>sp|P29063|PR4B_TOBAC Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1

 Score =  211 bits (538), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 102/144 (70%), Positives = 121/144 (84%), Gaps = 1/144 (0%)

Query: 1   MGRFGLCV-ILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPL 59
           +  + LCV +L + +++A A+AQSA+NVR+TYHLY+P+ I WDL AASAFCATWDA+KPL
Sbjct: 4   VNNYKLCVALLIMSVMMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPL 63

Query: 60  AWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKK 119
           AWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGLDLD  VF +
Sbjct: 64  AWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATVRIVDQCSNGGLDLDVNVFNQ 123

Query: 120 LDTNGIGYQQGFLTVSYEFVNCND 143
           LDTNG+GYQQG L V+YEFVNCND
Sbjct: 124 LDTNGLGYQQGHLIVNYEFVNCND 147

Nicotiana tabacum (taxid: 4097)

>sp|P32045|PRP2_SOLLC Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1

 Score =  208 bits (530), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 95/137 (69%), Positives = 113/137 (82%), Gaps = 1/137 (0%)

Query: 6   LCVILSVC-LLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQK 64
           LCV   V  +++A A+AQSA+NVRATYHLY+P+ I WDL  AS +CATWDA+KPL WR++
Sbjct: 7   LCVAFFVINMMMAVAAAQSATNVRATYHLYNPQNINWDLRTASVYCATWDADKPLEWRRR 66

Query: 65  YGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNG 124
           YGWTAFC   GP GQA+CGRCLRVTN+GTG Q+ VRIVDQC NGGLDLD  VF +LDTNG
Sbjct: 67  YGWTAFCGPAGPTGQASCGRCLRVTNTGTGTQETVRIVDQCRNGGLDLDVNVFNRLDTNG 126

Query: 125 IGYQQGFLTVSYEFVNC 141
           +GYQ+G L V+YEFVNC
Sbjct: 127 LGYQRGNLNVNYEFVNC 143

Solanum lycopersicum (taxid: 4081)

>sp|P29062|PR4A_TOBAC Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1

 Score =  207 bits (528), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/144 (71%), Positives = 122/144 (84%), Gaps = 1/144 (0%)

Query: 1   MGRFGLCV-ILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPL 59
           +  + LCV +L + +++A A+AQSA+NVR+TYHLY+P+ I WDL AASAFCATWDA+KPL
Sbjct: 4   VNNYKLCVALLIISMVMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPL 63

Query: 60  AWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKK 119
           AWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGLDLD  VF +
Sbjct: 64  AWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQTTVRIVDQCSNGGLDLDVNVFNQ 123

Query: 120 LDTNGIGYQQGFLTVSYEFVNCND 143
           LDTNG+GYQQG LTV+YEFVNCND
Sbjct: 124 LDTNGVGYQQGHLTVNYEFVNCND 147

Nicotiana tabacum (taxid: 4097)

>sp|P09762|WIN2_SOLTU Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1

 Score =  186 bits (472), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 83/121 (68%), Positives = 101/121 (83%)

Query: 23  SASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAAC 82
           SA NVRATYH+Y+P+ +GWDL A SA+C+TWDANKP AWR KYGWTAFC   GP G+ +C
Sbjct: 78  SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRGRDSC 137

Query: 83  GRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCN 142
           G+CLRVTN+ TGAQ  VRIVDQC+NGGLDLD  VF+++DT+G+G QQG L V+Y+FVNC 
Sbjct: 138 GKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNCG 197

Query: 143 D 143
           D
Sbjct: 198 D 198

Solanum tuberosum (taxid: 4113)

>sp|P09761|WIN1_SOLTU Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1

 Score =  183 bits (464), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 81/121 (66%), Positives = 101/121 (83%)

Query: 23  SASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAAC 82
           SA NVRATYH+Y+P+ +GWDL A SA+C+TWDANKPL+WR+KYGWTAFC   GP G+ +C
Sbjct: 79  SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSC 138

Query: 83  GRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCN 142
           G+CLRVTN+ TGAQ  VRIVDQC+NGGLDLD  VF+++DT+G G  QG L V+Y+FV+C 
Sbjct: 139 GKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDVNVFRQIDTDGNGNHQGHLIVNYQFVDCG 198

Query: 143 D 143
           D
Sbjct: 199 D 199

Solanum tuberosum (taxid: 4113)

>sp|P28814|BARW_HORVU Barwin OS=Hordeum vulgare PE=1 SV=1

 Score =  181 bits (459), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/125 (70%), Positives = 99/125 (79%), Gaps = 3/125 (2%)

Query: 22  QSASNVRATYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQ 79
           Q A++VRATYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   GP GQ
Sbjct: 1   QQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQ 60

Query: 80  AACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEF 138
           AACG+CLRVTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+F
Sbjct: 61  AACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQF 120

Query: 139 VNCND 143
           V+C D
Sbjct: 121 VDCRD 125

May be involved in a defense mechanism. Probable plant lectin. Binds weakly a chitin analog.

Hordeum vulgare (taxid: 4513)

>sp|P43082|HEVL_ARATH Hevein-like preproprotein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1

 Score =  178 bits (451), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 80/124 (64%), Positives = 96/124 (77%)

Query: 18  AASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPI 77
           +   +SASNVRATYH Y+P Q  WDL A SA+C+TWDA+KP AWR KYGWTAFC   GP 
Sbjct: 68  SGPGESASNVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPR 127

Query: 78  GQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYE 137
           GQA+CG+CLRV N+ T A   VRIVDQC+NGGLDLD  +F ++DT+G GYQQG L V Y+
Sbjct: 128 GQASCGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQ 187

Query: 138 FVNC 141
           FV+C
Sbjct: 188 FVDC 191

Arabidopsis thaliana (taxid: 3702)

>sp|P02877|HEVE_HEVBR Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2

 Score =  178 bits (451), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 81/121 (66%), Positives = 101/121 (83%)

Query: 23  SASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAAC 82
           SASNV ATYHLY+ +  GWDL AASA+C+TWDANKP +WR KYGWTAFC   G  GQ++C
Sbjct: 69  SASNVLATYHLYNSQDHGWDLNAASAYCSTWDANKPYSWRSKYGWTAFCGPVGAHGQSSC 128

Query: 83  GRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCN 142
           G+CL VTN+GTGA+  VRIVDQC+NGGLDLD  VF++LDT+G GY++G +TV+Y+FV+C 
Sbjct: 129 GKCLSVTNTGTGAKTTVRIVDQCSNGGLDLDVNVFRQLDTDGKGYERGHITVNYQFVDCG 188

Query: 143 D 143
           D
Sbjct: 189 D 189

N-acetyl-D-glucosamine / N-acetyl-D-neuraminic acid binding lectin. Can inhibit fungal growth.

Hevea brasiliensis (taxid: 3981)

>sp|O64393|WHW2_WHEAT Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1

 Score =  176 bits (446), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/121 (71%), Positives = 95/121 (78%), Gaps = 3/121 (2%)

Query: 26  NVRATYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACG 83
           NVRATYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   G  GQAACG
Sbjct: 28  NVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQAACG 87

Query: 84  RCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCN 142
           +CLRVTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C 
Sbjct: 88  KCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCR 147

Query: 143 D 143
           D
Sbjct: 148 D 148

Shows antifungal activity towards B.cinerea and towards the wheat-specific pathogenic fungi F.culmorum and F.graminearum (groups 1 and 2).

Triticum aestivum (taxid: 4565)

>sp|O64392|WHW1_WHEAT Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1

 Score =  176 bits (446), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 93/146 (63%), Positives = 109/146 (74%), Gaps = 3/146 (2%)

Query: 1   MGRFGLCVILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDL--TAASAFCATWDANKP 58
           M    + V+  +C   AAA+AQ A+NVRATYH Y P Q  WDL   A SA+CATWDA+KP
Sbjct: 1   MAARPMLVVALLCAAAAAATAQQATNVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKP 60

Query: 59  LAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVF 117
           L+WR KYGWTAFC   G  GQA+CG+CL+VTN  TGAQ   RIVDQCANGGLDLD + VF
Sbjct: 61  LSWRSKYGWTAFCGPAGAHGQASCGKCLQVTNPATGAQITARIVDQCANGGLDLDWDTVF 120

Query: 118 KKLDTNGIGYQQGFLTVSYEFVNCND 143
            K+DTNGIGYQQG L V+Y+FV+C D
Sbjct: 121 TKIDTNGIGYQQGHLNVNYQFVDCRD 146

Shows antifungal activity towards B.cinerea and towards the wheat-specific pathogenic fungi F.culmorum and F.graminearum (groups 1 and 2).

Triticum aestivum (taxid: 4565)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
400073104	143	pathogenesis response protein PR [Citrus	1.0	1.0	0.979	6e-72
3511147	143	PR-4 type protein [Vitis vinifera] gi|29	1.0	1.0	0.699	8e-54
388895491	142	PR-4 protein [Chimonanthus praecox]	0.993	1.0	0.699	2e-53
225453022	143	PREDICTED: pathogenesis-related protein	1.0	1.0	0.692	2e-53
362097039	143	pathogenesis-related protein 4 [Vitis ps	1.0	1.0	0.692	4e-53
130840	147	RecName: Full=Pathogenesis-related prote	1.0	0.972	0.708	5e-53
100352	139	pathogenesis-related protein 4B - common	0.965	0.992	0.733	2e-52
350538353	143	pathogenesis-related protein P2 precurso	0.951	0.951	0.693	5e-52
19962	147	pathogenesis-related protein 4A [Nicotia	1.0	0.972	0.715	5e-52
130839	147	RecName: Full=Pathogenesis-related prote	1.0	0.972	0.715	8e-52

>gi|400073104|gb|AFP66573.1| pathogenesis response protein PR [Citrus sinensis]

 Score =  275 bits (702), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 140/143 (97%), Positives = 141/143 (98%)

Query: 1   MGRFGLCVILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLA 60
           MGRFGLCVILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDA+KPLA
Sbjct: 1   MGRFGLCVILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDASKPLA 60

Query: 61  WRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKL 120
           WRQKYGWTAFCHSGGPIGQAACGRCLR  NSGTGAQQIVRIVDQCANGGLDLDEGVFKKL
Sbjct: 61  WRQKYGWTAFCHSGGPIGQAACGRCLRAANSGTGAQQIVRIVDQCANGGLDLDEGVFKKL 120

Query: 121 DTNGIGYQQGFLTVSYEFVNCND 143
           DTNGIGYQQGFLTVSYEFVNCND
Sbjct: 121 DTNGIGYQQGFLTVSYEFVNCND 143

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3511147|gb|AAC33732.1| PR-4 type protein [Vitis vinifera] gi|295814499|gb|ADG35965.1| pathogenesis-related protein 4 [Vitis hybrid cultivar]

 Score =  214 bits (546), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 100/143 (69%), Positives = 115/143 (80%)

Query: 1   MGRFGLCVILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLA 60
           M R G+C ++ +  LVA A+AQSASNVRATYH Y+PEQ GWDL A SA+C+TWDA++PLA
Sbjct: 1   MERRGICKVVVLLSLVACAAAQSASNVRATYHYYNPEQNGWDLNAVSAYCSTWDASQPLA 60

Query: 61  WRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKL 120
           WR KYGWTAFC   GP GQAACG+CL VTN+ TG Q  VRIVDQC+NGGLDLD GVF KL
Sbjct: 61  WRSKYGWTAFCGPSGPTGQAACGKCLSVTNTATGTQATVRIVDQCSNGGLDLDSGVFNKL 120

Query: 121 DTNGIGYQQGFLTVSYEFVNCND 143
           DTNG GY QG L V+YEFV+C D
Sbjct: 121 DTNGAGYNQGHLIVNYEFVDCGD 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388895491|gb|AFK82275.1| PR-4 protein [Chimonanthus praecox]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 100/143 (69%), Positives = 118/143 (82%), Gaps = 1/143 (0%)

Query: 1   MGRFGLCVILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLA 60
           MG  G+ ++  +CL  A A AQSASNVRATYH+Y+P+QIGWD   AS FCATWDANKPLA
Sbjct: 1   MGNLGVSMVFLLCL-AAYAEAQSASNVRATYHIYNPQQIGWDYNTASVFCATWDANKPLA 59

Query: 61  WRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKL 120
           WR KYGWTAFC   GP GQA+CG+CLRVTN+GTG+Q  VRIVDQC+NGGLDL+EGVF++L
Sbjct: 60  WRSKYGWTAFCGLVGPRGQASCGKCLRVTNTGTGSQATVRIVDQCSNGGLDLEEGVFRQL 119

Query: 121 DTNGIGYQQGFLTVSYEFVNCND 143
           DTNG G QQG L V+Y+FV+C D
Sbjct: 120 DTNGAGIQQGHLIVNYDFVDCGD 142

Source: Chimonanthus praecox

Species: Chimonanthus praecox

Genus: Chimonanthus

Family: Calycanthaceae

Order: Laurales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453022|ref|XP_002264720.1| PREDICTED: pathogenesis-related protein PR-4B [Vitis vinifera] gi|296087927|emb|CBI35210.3| unnamed protein product [Vitis vinifera]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/143 (69%), Positives = 115/143 (80%)

Query: 1   MGRFGLCVILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLA 60
           M R G+C ++ +  LVA A+AQSASNVRATYH Y+P Q GWDL A SA+C+TWDA+KPLA
Sbjct: 1   MERRGICKVVVLLSLVACAAAQSASNVRATYHYYNPAQNGWDLNAVSAYCSTWDASKPLA 60

Query: 61  WRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKL 120
           WR KYGWTAFC   GP GQAACG+CL VTN+ TG Q  VRIVDQC+NGGLDLD GVF +L
Sbjct: 61  WRSKYGWTAFCGPSGPTGQAACGKCLSVTNTATGTQATVRIVDQCSNGGLDLDSGVFNQL 120

Query: 121 DTNGIGYQQGFLTVSYEFVNCND 143
           DTNG GY +G LTV+Y+FVNC D
Sbjct: 121 DTNGAGYAKGHLTVNYQFVNCGD 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|362097039|gb|AEW12795.1| pathogenesis-related protein 4 [Vitis pseudoreticulata]

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 99/143 (69%), Positives = 114/143 (79%)

Query: 1   MGRFGLCVILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLA 60
           M R G+C ++ +  LVA A+AQSASNVRATYH Y+P Q GWDL A SA+C+TWDA+KPLA
Sbjct: 1   MERRGICKVVVLLSLVACAAAQSASNVRATYHYYNPAQNGWDLNAVSAYCSTWDASKPLA 60

Query: 61  WRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKL 120
           WR KYGWTAFC   GP GQAACG+CL VTN+ TG Q  VRIVDQC+NGGLDLD GVF +L
Sbjct: 61  WRSKYGWTAFCGPSGPTGQAACGKCLSVTNTATGTQATVRIVDQCSNGGLDLDSGVFNQL 120

Query: 121 DTNGIGYQQGFLTVSYEFVNCND 143
           DTNG GY QG L V+Y+FVNC D
Sbjct: 121 DTNGAGYAQGHLKVNYQFVNCGD 143

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|130840|sp|P29063.1|PR4B_TOBAC RecName: Full=Pathogenesis-related protein PR-4B; Flags: Precursor gi|19968|emb|CAA42821.1| PR-4b protein [Nicotiana tabacum]

 Score =  211 bits (538), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 102/144 (70%), Positives = 121/144 (84%), Gaps = 1/144 (0%)

Query: 1   MGRFGLCV-ILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPL 59
           +  + LCV +L + +++A A+AQSA+NVR+TYHLY+P+ I WDL AASAFCATWDA+KPL
Sbjct: 4   VNNYKLCVALLIMSVMMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPL 63

Query: 60  AWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKK 119
           AWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGLDLD  VF +
Sbjct: 64  AWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATVRIVDQCSNGGLDLDVNVFNQ 123

Query: 120 LDTNGIGYQQGFLTVSYEFVNCND 143
           LDTNG+GYQQG L V+YEFVNCND
Sbjct: 124 LDTNGLGYQQGHLIVNYEFVNCND 147

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|100352|pir||S23800 pathogenesis-related protein 4B - common tobacco gi|19966|emb|CAA41438.1| pathogenesis-related protein 4B [Nicotiana tabacum]

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/139 (73%), Positives = 119/139 (85%), Gaps = 1/139 (0%)

Query: 6   LCV-ILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQK 64
           LCV +L + +++A A+AQSA+NVR+TYHLY+P+ I WDL AASAFCATWDA+KPLAWRQK
Sbjct: 1   LCVALLIMSVMMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQK 60

Query: 65  YGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNG 124
           YGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGLDLD  VF +LDTNG
Sbjct: 61  YGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATVRIVDQCSNGGLDLDVNVFNQLDTNG 120

Query: 125 IGYQQGFLTVSYEFVNCND 143
           +GYQQG L V+YEFVNCND
Sbjct: 121 LGYQQGHLIVNYEFVNCND 139

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350538353|ref|NP_001234083.1| pathogenesis-related protein P2 precursor [Solanum lycopersicum] gi|400851|sp|P32045.1|PRP2_SOLLC RecName: Full=Pathogenesis-related protein P2; Flags: Precursor gi|19976|emb|CAA41439.1| pathogenesis-related protein P2 [Solanum lycopersicum]

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 95/137 (69%), Positives = 113/137 (82%), Gaps = 1/137 (0%)

Query: 6   LCVILSVC-LLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQK 64
           LCV   V  +++A A+AQSA+NVRATYHLY+P+ I WDL  AS +CATWDA+KPL WR++
Sbjct: 7   LCVAFFVINMMMAVAAAQSATNVRATYHLYNPQNINWDLRTASVYCATWDADKPLEWRRR 66

Query: 65  YGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNG 124
           YGWTAFC   GP GQA+CGRCLRVTN+GTG Q+ VRIVDQC NGGLDLD  VF +LDTNG
Sbjct: 67  YGWTAFCGPAGPTGQASCGRCLRVTNTGTGTQETVRIVDQCRNGGLDLDVNVFNRLDTNG 126

Query: 125 IGYQQGFLTVSYEFVNC 141
           +GYQ+G L V+YEFVNC
Sbjct: 127 LGYQRGNLNVNYEFVNC 143

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19962|emb|CAA41437.1| pathogenesis-related protein 4A [Nicotiana tabacum]

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 103/144 (71%), Positives = 122/144 (84%), Gaps = 1/144 (0%)

Query: 1   MGRFGLCV-ILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPL 59
           +  + LCV +L + +++A A+AQSA+NVR+TYHLY+P+ I WDL AASAFCATWDA+KPL
Sbjct: 4   VNNYKLCVALLIISMVMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPL 63

Query: 60  AWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKK 119
           AWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGLDLD  VF +
Sbjct: 64  AWRQKYGWTAFCGPAGPRGQVSCGRCLRVTNTGTGTQTTVRIVDQCSNGGLDLDVNVFNQ 123

Query: 120 LDTNGIGYQQGFLTVSYEFVNCND 143
           LDTNG+GYQQG LTV+YEFVNCND
Sbjct: 124 LDTNGVGYQQGHLTVNYEFVNCND 147

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|130839|sp|P29062.1|PR4A_TOBAC RecName: Full=Pathogenesis-related protein PR-4A; Flags: Precursor gi|19964|emb|CAA42820.1| PR-4a protein [Nicotiana tabacum] gi|228447|prf||1804330A pathogenesis-related protein 4

 Score =  207 bits (528), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 103/144 (71%), Positives = 122/144 (84%), Gaps = 1/144 (0%)

Query: 1   MGRFGLCV-ILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPL 59
           +  + LCV +L + +++A A+AQSA+NVR+TYHLY+P+ I WDL AASAFCATWDA+KPL
Sbjct: 4   VNNYKLCVALLIISMVMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPL 63

Query: 60  AWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKK 119
           AWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGLDLD  VF +
Sbjct: 64  AWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQTTVRIVDQCSNGGLDLDVNVFNQ 123

Query: 120 LDTNGIGYQQGFLTVSYEFVNCND 143
           LDTNG+GYQQG LTV+YEFVNCND
Sbjct: 124 LDTNGVGYQQGHLTVNYEFVNCND 147

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2084918	212	PR4 "pathogenesis-related 4" [	0.797	0.537	0.640	2e-40
UNIPROTKB|P83343	107	P83343 "Pathogenesis-related p	0.748	1.0	0.663	4.3e-38

TAIR|locus:2084918 PR4 "pathogenesis-related 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 73/114 (64%), Positives = 88/114 (77%)

Query:    30 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVT 89
             TYH Y+P Q  WDL A SA+C+TWDA+KP AWR KYGWTAFC   GP GQA+CG+CLRV 
Sbjct:    80 TYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQASCGKCLRVK 139

Query:    90 NSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 143
             N+ T A   VRIVDQC+NGGLDLD  +F ++DT+G GYQQG L V Y+FV+C +
Sbjct:   140 NTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVDCGN 193

GO:0005576 "extracellular region" evidence=ISM

GO:0016998 "cell wall macromolecule catabolic process" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEA;RCA

GO:0050832 "defense response to fungus" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0080027 "response to herbivore" evidence=IEP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0004540 "ribonuclease activity" evidence=IDA

GO:0004568 "chitinase activity" evidence=IDA

GO:0008061 "chitin binding" evidence=ISS

GO:0009615 "response to virus" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

UNIPROTKB|P83343 P83343 "Pathogenesis-related protein PR-4" [Prunus persica (taxid:3760)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 71/107 (66%), Positives = 84/107 (78%)

Query:    37 EQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQ 96
             + I WDL  AS FCATWDA+KPL+WR KYGWTAFC   GP GQ +CG+CL VTN+GTGA+
Sbjct:     1 QNINWDLRTASVFCATWDADKPLSWRSKYGWTAFCGPVGPTGQDSCGKCLLVTNTGTGAK 60

Query:    97 QIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 143
               VRIVDQC+NGGLDLD  VF ++DTNG G  QG L V+Y+FV+C D
Sbjct:    61 VTVRIVDQCSNGGLDLDVNVFNQIDTNGQGNAQGHLIVNYDFVDCGD 107


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.139   0.475    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      143       119   0.00091  102 3  11 22  0.48    30
                                                     29  0.47    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  154 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.05u 0.08s 12.13t   Elapsed:  00:00:02
  Total cpu time:  12.05u 0.08s 12.13t   Elapsed:  00:00:02
  Start:  Sat May 11 00:11:46 2013   End:  Sat May 11 00:11:48 2013

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P29063	PR4B_TOBAC	No assigned EC number	0.7083	1.0	0.9727	N/A	no
P29062	PR4A_TOBAC	No assigned EC number	0.7152	1.0	0.9727	N/A	no
O64393	WHW2_WHEAT	No assigned EC number	0.7107	0.8251	0.7972	N/A	no
O64392	WHW1_WHEAT	No assigned EC number	0.6369	1.0	0.9794	N/A	no
P32045	PRP2_SOLLC	No assigned EC number	0.6934	0.9510	0.9510	N/A	no
P28814	BARW_HORVU	No assigned EC number	0.704	0.8531	0.976	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	PR-4a	SubName- Full=Chromosome chr14 scaffold_190, whole genome shotgun sequence; (143 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00001423001	RecName- Full=Ribonuclease; EC=3.1.26.-;; Endonuclease that specifically degrades the RNA of RN [...] (298 aa)							•		0.483
	GSVIVG00025340001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (340 aa)							•		0.480

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	143
pfam00967	119	pfam00967, Barwin, Barwin family	1e-70

>gnl|CDD|201533 pfam00967, Barwin, Barwin family

 Score =  207 bits (529), Expect = 1e-70
 Identities = 86/119 (72%), Positives = 100/119 (84%)

Query: 23  SASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAAC 82
           SASNVRATYH Y+P+Q  WDL AASA+CATWDANKPL+WR KYGWTAFC   GP GQ++C
Sbjct: 1   SASNVRATYHYYNPQQNNWDLNAASAYCATWDANKPLSWRSKYGWTAFCGPAGPRGQSSC 60

Query: 83  GRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNC 141
           G+CLRVTN+ TGA   VRIVDQC+NGGLDLD  VF +LDT+G GYQQG L V+Y+FV+C
Sbjct: 61  GKCLRVTNTATGASVTVRIVDQCSNGGLDLDVNVFNQLDTDGAGYQQGHLNVNYQFVDC 119

Length = 119

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
PF00967	119	Barwin: Barwin family; InterPro: IPR001153 Barwin	100.0
PLN03024	125	Putative EG45-like domain containing protein 1; Pr	99.92
PLN00193	256	expansin-A; Provisional	99.86
PLN00050	247	expansin A; Provisional	99.85
PLN03023	247	Expansin-like B1; Provisional	99.81
smart00837	87	DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b	99.67
PF03330	78	DPBB_1: Rare lipoprotein A (RlpA)-like double-psi	99.65
PF07249	119	Cerato-platanin: Cerato-platanin; InterPro: IPR010	99.5
TIGR00413	208	rlpA rare lipoprotein A. This is a family of proka	99.01
COG4305	232	Endoglucanase C-terminal domain/subunit and relate	98.96
COG0797	233	RlpA Lipoproteins [Cell envelope biogenesis, outer	98.81
PRK10672	361	rare lipoprotein A; Provisional	98.48
PF02015	201	Glyco_hydro_45: Glycosyl hydrolase family 45; Inte	94.85

>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds

Probab=100.00  E-value=2e-36  Score=218.60  Aligned_cols=118  Identities=71%  Similarity=1.338  Sum_probs=93.6

Q ss_pred             CCceeEEEEEeCCCCccccCCCCccccccCCCCCCceeccccccccccCCCCCCCCcCCCcEEEEEECCCCcEEEEEEEe
Q 032285           24 ASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVD  103 (143)
Q Consensus        24 ~~~~~~t~t~y~~~~~~~~~~~~~GaCG~~~~~~~~~v~~~~~~~Al~~~~~~~~~~~CGk~i~Vt~~~~g~sv~v~VvD  103 (143)
                      +++|++|||||+|+.++|+|...+-+|+.++.++++.|+++|+|+|+..+.-|.+.+.||||++|||+.+|++++|+|||
T Consensus         2 a~nVraTYh~Y~p~~~nwdl~~~s~yCAtwda~kpl~wr~kYgWtAfCgp~g~~gq~~CGkClrVTNt~tga~~~~RIVD   81 (119)
T PF00967_consen    2 ASNVRATYHYYNPAQNNWDLNAVSAYCATWDADKPLAWRSKYGWTAFCGPAGPMGQDSCGKCLRVTNTATGAQVTVRIVD   81 (119)
T ss_dssp             EEEEEEE-EESS-GGGTT-TTTT--TTHHHHTTS-CHHHHHS--EEC-STT---SGGGTT-EEEEE-TTT--EEEEEEEE
T ss_pred             ccceeeeeeecCcccCCcccccceeeEeeecCCCCccccccCCeeEEecccCccCcccccceEEEEecCCCcEEEEEEEE
Confidence            46899999999999999999999999999999999999999999999987766788999999999999999999999999


Q ss_pred             CCCCCCCcCCHHHHHHHHhCCCCccccEEEEEEEEEec
Q 032285          104 QCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNC  141 (143)
Q Consensus       104 ~C~~~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v~C  141 (143)
                      +|++++|||++.+|++|.++|++...|.+.|+|+||+|
T Consensus        82 qCsnGGLDld~~vF~~iDtdG~G~~~Ghl~V~y~fV~C  119 (119)
T PF00967_consen   82 QCSNGGLDLDPTVFNQIDTDGQGYAQGHLIVDYEFVDC  119 (119)
T ss_dssp             E-SSSSEES-SSSHHHH-SSSHHHHHTEEEEEEEEE--
T ss_pred             cCCCCCcccChhHHhhhccCCcccccceEEEEEEEEcC
Confidence            99999999999999999999999999999999999999

It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.

>PLN03024 Putative EG45-like domain containing protein 1; Provisional

Probab=99.92  E-value=1.8e-24  Score=159.72  Aligned_cols=112  Identities=21%  Similarity=0.303  Sum_probs=87.9

Q ss_pred             CCchhHHHHHHHHHHHHHhhhccCCceeEEEEEeCCCCccccCCCCccccccCCCCCCceeccccccccccCCCCCCCCc
Q 032285            1 MGRFGLCVILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQA   80 (143)
Q Consensus         1 m~~~~~~~~~~l~~~~~~~~a~~~~~~~~t~t~y~~~~~~~~~~~~~GaCG~~~~~~~~~v~~~~~~~Al~~~~~~~~~~   80 (143)
                      |.+-+++++.+++.+.+++.+..     ++.|||++..        .|||+..+....+++       |++.++| ++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~-----G~AT~Y~~~~--------~gAC~~~~~~g~~ia-------Als~~lf-~~G~   59 (125)
T PLN03024          1 MSKRILIFSTVLVFLFSVSYATP-----GIATFYTSYT--------PSACYRGTSFGVMIA-------AASDSLW-NNGR   59 (125)
T ss_pred             CceeeHHHHHHHHHHhhhhcccc-----eEEEEeCCCC--------CccccCCCCCCCEeE-------EeCHHHc-CCCc
Confidence            55555566666656655554433     3466798742        489987766677777       9999999 8999


Q ss_pred             CCCcEEEEEE---------CCCCcEEEEEEEeCCCC---CCCcCCHHHHHHHHhCCCCccccEEEEEEE
Q 032285           81 ACGRCLRVTN---------SGTGAQQIVRIVDQCAN---GGLDLDEGVFKKLDTNGIGYQQGFLTVSYE  137 (143)
Q Consensus        81 ~CGk~i~Vt~---------~~~g~sv~v~VvD~C~~---~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~  137 (143)
                      .||+|++|++         ..+||+|+|+|+|+||.   ++||||++||++|+    ....|+++|+|.
T Consensus        60 ~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD~CP~~C~~~~DLS~~AF~~iA----~~~aG~v~V~y~  124 (125)
T PLN03024         60 VCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVDHCPSGCASTLDLSREAFAQIA----NPVAGIINIDYI  124 (125)
T ss_pred             ccCceEEEEECCCCccccccccCCeEEEEEEcCCCCCCCCceEcCHHHHHHhc----CccCCEEEEEEe
Confidence            9999999985         24689999999999973   59999999999999    678999999996

>PLN00193 expansin-A; Provisional

Probab=99.86  E-value=8e-21  Score=154.83  Aligned_cols=120  Identities=18%  Similarity=0.317  Sum_probs=90.0

Q ss_pred             HHHHHHHHhhhc-cCCceeEEEEEeCCCCccccCCCCccccccCCCCCC-ceeccccccccccCCCCCCCCcCCCcEEEE
Q 032285           11 SVCLLVAAASAQ-SASNVRATYHLYHPEQIGWDLTAASAFCATWDANKP-LAWRQKYGWTAFCHSGGPIGQAACGRCLRV   88 (143)
Q Consensus        11 ~l~~~~~~~~a~-~~~~~~~t~t~y~~~~~~~~~~~~~GaCG~~~~~~~-~~v~~~~~~~Al~~~~~~~~~~~CGk~i~V   88 (143)
                      ++|.+....++- ...+..++.|||.....   .++.+||||+.+.... +-.    ..+|++.++| +++..||+|++|
T Consensus        14 ~~~~~~~~~~~~~~~~W~~a~AT~Yg~~d~---~gt~gGACGYg~l~~~~~g~----~~AAls~~lf-~~G~~CGaCyev   85 (256)
T PLN00193         14 FCCYLFINVNAFTPSGWTKAHATFYGGSDA---SGTMGGACGYGNLYSTGYGT----RTAALSTALF-NDGASCGQCYRI   85 (256)
T ss_pred             HHHHHHhhccCcCCCCceeeEEEEcCCCCC---CCCCCcccCCCCccccCCCc----eeeecCHhHc-cCCccccCeEEE
Confidence            444444444443 33577889999986432   2234799999864322 111    1358999999 899999999999


Q ss_pred             EECC--------CCcEEEEEEEeCCCC----------------CCCcCCHHHHHHHHhCCCCccccEEEEEEEEEecC
Q 032285           89 TNSG--------TGAQQIVRIVDQCAN----------------GGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCN  142 (143)
Q Consensus        89 t~~~--------~g~sv~v~VvD~C~~----------------~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v~C~  142 (143)
                      ++..        .|++|+|+|+|+||.                .|||||+.||.+|+    .+..|+++|+|+.|+|+
T Consensus        86 ~C~~~~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA----~~~~Giv~V~yrRVpC~  159 (256)
T PLN00193         86 MCDYQADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIG----IYRGGIVPVLFQRVPCK  159 (256)
T ss_pred             ECCCCCCCccccCCCeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHh----hhcCCeEeEEEEEeccc
Confidence            9731        467999999999964                59999999999998    57899999999999996

>PLN00050 expansin A; Provisional

Probab=99.85  E-value=6.3e-21  Score=154.81  Aligned_cols=130  Identities=17%  Similarity=0.295  Sum_probs=92.0

Q ss_pred             CCchhHHHHHHHHHHHHHhhhccCCceeEEEEEeCCCCccccCCCCccccccCCCCCCceeccccccccccCCCCCCCCc
Q 032285            1 MGRFGLCVILSVCLLVAAASAQSASNVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQA   80 (143)
Q Consensus         1 m~~~~~~~~~~l~~~~~~~~a~~~~~~~~t~t~y~~~~~~~~~~~~~GaCG~~~~~~~~~v~~~~~~~Al~~~~~~~~~~   80 (143)
                      |+-+..-+++||. ++...+.....+..++.|||.....   .++.+||||+.+......   ....+|++.++| +++.
T Consensus         1 ~~~~~~~~~~~~~-~~~~~~~~~~~W~~a~AT~Yg~~dg---~gt~gGACGYg~l~~~~~---g~~~AAls~~lf-~~G~   72 (247)
T PLN00050          1 MECLGYTIVALLS-ILKIVEGYGSGWTGAHATFYGGGDA---SGTMGGACGYGNLYSQGY---GTNTAALSTALF-NNGL   72 (247)
T ss_pred             CcchhhhHHHHhh-hheeccccCCCccccEEEEcCCCCC---CCCCCcccCCCCccccCC---CceeeeccHhHc-cCCc
Confidence            4445444444442 2222232233466777888975422   234579999987432110   012358999999 8999


Q ss_pred             CCCcEEEEEECCC-----CcEEEEEEEeCCCC----------------CCCcCCHHHHHHHHhCCCCccccEEEEEEEEE
Q 032285           81 ACGRCLRVTNSGT-----GAQQIVRIVDQCAN----------------GGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFV  139 (143)
Q Consensus        81 ~CGk~i~Vt~~~~-----g~sv~v~VvD~C~~----------------~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v  139 (143)
                      .||+|++|+++.+     +++|+|+|+|+||.                .|||||+.||.+|+    .+..|+++|+|+.|
T Consensus        73 ~CGaCyeV~C~~~~~~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA----~~~aGii~V~yRRV  148 (247)
T PLN00050         73 SCGACFEIKCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIA----QYKAGIVPVQYRRV  148 (247)
T ss_pred             cccceEEEEcCCCCcccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHh----hhcCCeeeeEEEEe
Confidence            9999999998532     24899999999973                69999999999999    67889999999999


Q ss_pred             ecC
Q 032285          140 NCN  142 (143)
Q Consensus       140 ~C~  142 (143)
                      +|.
T Consensus       149 pC~  151 (247)
T PLN00050        149 ACR  151 (247)
T ss_pred             cCc
Confidence            996

>PLN03023 Expansin-like B1; Provisional

Probab=99.81  E-value=2.2e-19  Score=145.74  Aligned_cols=109  Identities=14%  Similarity=0.239  Sum_probs=84.3

Q ss_pred             ceeEEEEEeCCCCccccCCCCccccccCCCCCCceeccccccccccCCCCCCCCcCCCcEEEEEECC----CCcEEEEEE
Q 032285           26 NVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSG----TGAQQIVRI  101 (143)
Q Consensus        26 ~~~~t~t~y~~~~~~~~~~~~~GaCG~~~~~~~~~v~~~~~~~Al~~~~~~~~~~~CGk~i~Vt~~~----~g~sv~v~V  101 (143)
                      +..++.|||.+.+.   .++.+||||+.+...+..-   ..-+|++ ++| +++..||+|++|++..    .+++|+|+|
T Consensus        25 W~~a~AT~Yg~~~g---~gt~gGACGYg~~~~~~~g---~~~aa~s-~Lf-~~G~~CGaCy~irC~~~~~C~~~~v~V~i   96 (247)
T PLN03023         25 FTYSRATYYGSPDC---LGTPTGACGFGEYGRTVNG---GNVAGVS-RLY-RNGTGCGACYQVRCKAPNLCSDDGVNVVV   96 (247)
T ss_pred             cccceEEEeCCCCC---CCCCCccccCCccccCCCc---ceeeeeh-hhh-cCCchhcccEEeecCCCCccCCCCeEEEE
Confidence            67788889987643   3445799999875543211   1123666 899 8999999999999853    456899999


Q ss_pred             EeCCC--CCCCcCCHHHHHHHHhCCCC---ccccEEEEEEEEEecC
Q 032285          102 VDQCA--NGGLDLDEGVFKKLDTNGIG---YQQGFLTVSYEFVNCN  142 (143)
Q Consensus       102 vD~C~--~~~LDLS~~aF~~l~~~g~~---~~~G~i~I~W~~v~C~  142 (143)
                      +|.|+  ..|||||..||.+||..|+.   +..|+++|+++.|+|.
T Consensus        97 Td~~~~~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~  142 (247)
T PLN03023         97 TDYGEGDKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCR  142 (247)
T ss_pred             EeCCCCCCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecc
Confidence            99994  67999999999999953322   5679999999999996

>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Probab=99.67  E-value=1.3e-16  Score=111.13  Aligned_cols=64  Identities=25%  Similarity=0.490  Sum_probs=55.9

Q ss_pred             ccccCCCCCCCCcCCCcEEEEEEC------CCCcEEEEEEEeCCCC----------------CCCcCCHHHHHHHHhCCC
Q 032285           68 TAFCHSGGPIGQAACGRCLRVTNS------GTGAQQIVRIVDQCAN----------------GGLDLDEGVFKKLDTNGI  125 (143)
Q Consensus        68 ~Al~~~~~~~~~~~CGk~i~Vt~~------~~g~sv~v~VvD~C~~----------------~~LDLS~~aF~~l~~~g~  125 (143)
                      +|++.++| +++..||+|++|++.      .++++|+|+|+|+||.                +|||||+.||.+|+    
T Consensus         2 aA~s~~lf-~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA----   76 (87)
T smart00837        2 AALSTALF-NNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIA----   76 (87)
T ss_pred             cccCHHHc-cCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHh----
Confidence            38888999 899999999999963      1346999999999963                59999999999999    


Q ss_pred             CccccEEEEEE
Q 032285          126 GYQQGFLTVSY  136 (143)
Q Consensus       126 ~~~~G~i~I~W  136 (143)
                      ....|+|+|+|
T Consensus        77 ~~~~Gvi~v~y   87 (87)
T smart00837       77 QYKAGIVPVKY   87 (87)
T ss_pred             hhcCCEEeeEC
Confidence            67899999987

Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.

>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures

Probab=99.65  E-value=5.4e-17  Score=109.82  Aligned_cols=63  Identities=30%  Similarity=0.474  Sum_probs=51.5

Q ss_pred             cccCCCCCCCCcCCCcEEEEEE---CCC-----C--cEEEEEEEeCCC---CCCCcCCHHHHHHHHhCCCCccccEEEEE
Q 032285           69 AFCHSGGPIGQAACGRCLRVTN---SGT-----G--AQQIVRIVDQCA---NGGLDLDEGVFKKLDTNGIGYQQGFLTVS  135 (143)
Q Consensus        69 Al~~~~~~~~~~~CGk~i~Vt~---~~~-----g--~sv~v~VvD~C~---~~~LDLS~~aF~~l~~~g~~~~~G~i~I~  135 (143)
                      |.+...| +++..||+|+++++   ...     .  |+|+|+|+|+||   .++|||||+||++|+    ..+.|+++|+
T Consensus         3 a~~~~~y-~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~~~~~~lDLS~~aF~~la----~~~~G~i~V~   77 (78)
T PF03330_consen    3 AGSATWY-DNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPGCPPNHLDLSPAAFKALA----DPDAGVIPVE   77 (78)
T ss_dssp             EE-HHHH-GGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TTSSSSEEEEEHHHHHHTB----STTCSSEEEE
T ss_pred             EEEhhhc-CCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCCCcCCEEEeCHHHHHHhC----CCCceEEEEE
Confidence            5566677 67899999999998   111     2  899999999996   789999999999998    6789999999


Q ss_pred             E
Q 032285          136 Y  136 (143)
Q Consensus       136 W  136 (143)
                      |
T Consensus        78 w   78 (78)
T PF03330_consen   78 W   78 (78)
T ss_dssp             E
T ss_pred             C
Confidence            9

They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.

>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family

Probab=99.50  E-value=2e-13  Score=100.17  Aligned_cols=98  Identities=21%  Similarity=0.385  Sum_probs=68.8

Q ss_pred             eCCCCccccCCCCccccccCCCCCCceeccccccccccC-CCCC----------CCCcCCCcEEEEEECCCCcEEEEEEE
Q 032285           34 YHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCH-SGGP----------IGQAACGRCLRVTNSGTGAQQIVRIV  102 (143)
Q Consensus        34 y~~~~~~~~~~~~~GaCG~~~~~~~~~v~~~~~~~Al~~-~~~~----------~~~~~CGk~i~Vt~~~~g~sv~v~Vv  102 (143)
                      |++.+++-+...+..+|+...++..    .++ |..++. +.||          ++++.||+|+++++  +|++|.+..+
T Consensus         5 yd~~YD~~~~sl~~vaCSdg~nGL~----tk~-~~t~g~lp~Fp~IGg~~~V~gWnS~~CGtC~~lty--~g~si~vlaI   77 (119)
T PF07249_consen    5 YDTGYDDASRSLTTVACSDGPNGLI----TKG-YPTFGSLPNFPYIGGAPAVAGWNSPNCGTCWKLTY--NGRSIYVLAI   77 (119)
T ss_dssp             E-CCGGSTT-BGGGSSSSSTTTSCC----CCH--SBCCCSTTTTSEEEETT--STT-TTTT-EEEEEE--TTEEEEEEEE
T ss_pred             ecCCCCCCCCccceEEecCCCCccc----ccC-ccchhhcCCCCeeccccccccCCCCCCCCeEEEEE--CCeEEEEEEE
Confidence            4666666667777899999876642    233 333332 3444          57899999999998  7999999999


Q ss_pred             eCCCCCCCcCCHHHHHHHHhCCCCccccEEEEEEEEEe
Q 032285          103 DQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVN  140 (143)
Q Consensus       103 D~C~~~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v~  140 (143)
                      |.- .+++++|++||++| ++|+....|+|+++|+.|+
T Consensus        78 D~a-~~gfnis~~A~n~L-T~g~a~~lG~V~a~~~qV~  113 (119)
T PF07249_consen   78 DHA-GGGFNISLDAMNDL-TNGQAVELGRVDATYTQVD  113 (119)
T ss_dssp             EE--SSSEEE-HHHHHHH-HTS-CCCC-EEE-EEEEE-
T ss_pred             ecC-CCcccchHHHHHHh-cCCcccceeEEEEEEEEcC
Confidence            997 57899999999999 5778899999999999986

It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.

>TIGR00413 rlpA rare lipoprotein A

Probab=99.01  E-value=4e-09  Score=83.84  Aligned_cols=57  Identities=23%  Similarity=0.288  Sum_probs=52.1

Q ss_pred             CCcEEEEEECCCCcEEEEEEEeCCC---CCCCcCCHHHHHHHHhCCCCccccEEEEEEEEEecC
Q 032285           82 CGRCLRVTNSGTGAQQIVRIVDQCA---NGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCN  142 (143)
Q Consensus        82 CGk~i~Vt~~~~g~sv~v~VvD~C~---~~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v~C~  142 (143)
                      .|..++|||..|||+|+|+|.|++|   ..-||||++|+++|+    -...|+.+|+.+.+...
T Consensus        35 lgT~V~VtNl~ngrsviVrVnDRGPf~~gRiIDLS~aAA~~Lg----~~~~G~a~V~vevl~~~   94 (208)
T TIGR00413        35 FNTYVKVTNLHNNRSVIVRINDRGPFSDDRIIDLSHAAAREIG----LISRGVGQVRIEVLHVA   94 (208)
T ss_pred             CCCEEEEEECCCCCEEEEEEeCCCCCCCCCEEECCHHHHHHcC----CCcCceEEEEEEEEecC
Confidence            7999999999999999999999997   569999999999998    67899999999988643

This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.

>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]

Probab=98.96  E-value=2e-09  Score=84.03  Aligned_cols=71  Identities=28%  Similarity=0.382  Sum_probs=58.9

Q ss_pred             ccccccCCCC---CCCCcCCCcEEEEEECCCCcEEEEEEEeCCC---CCCCcCCHHHHHHHHhCCCCccccEEEEEEEEE
Q 032285           66 GWTAFCHSGG---PIGQAACGRCLRVTNSGTGAQQIVRIVDQCA---NGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFV  139 (143)
Q Consensus        66 ~~~Al~~~~~---~~~~~~CGk~i~Vt~~~~g~sv~v~VvD~C~---~~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v  139 (143)
                      ..+|+|..+.   +-..++-|..+||.++++  +.+|.|+|.-|   .|+|||||.||.+|+    +..+|+|+|+|+.|
T Consensus        57 eITAlNPaqlNlGGipAAmAGaYLrVqGPKG--~TTVYVTDlYPegasGaLDLSpNAFakIG----nm~qGrIpvqWrvv  130 (232)
T COG4305          57 EITALNPAQLNLGGIPAAMAGAYLRVQGPKG--KTTVYVTDLYPEGASGALDLSPNAFAKIG----NMKQGRIPVQWRVV  130 (232)
T ss_pred             eeeecCHHHcccCCchhhhccceEEEECCCC--ceEEEEecccccccccccccChHHHhhhc----chhcCccceeEEEe
Confidence            3468887654   113467999999999865  67889999996   689999999999998    78999999999999


Q ss_pred             ecC
Q 032285          140 NCN  142 (143)
Q Consensus       140 ~C~  142 (143)
                      +-|
T Consensus       131 ~aP  133 (232)
T COG4305         131 KAP  133 (232)
T ss_pred             ccc
Confidence            865

>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]

Probab=98.81  E-value=1.4e-08  Score=81.97  Aligned_cols=56  Identities=29%  Similarity=0.351  Sum_probs=51.6

Q ss_pred             CCcEEEEEECCCCcEEEEEEEeCCC---CCCCcCCHHHHHHHHhCCCCccccEEEEEEEEEec
Q 032285           82 CGRCLRVTNSGTGAQQIVRIVDQCA---NGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNC  141 (143)
Q Consensus        82 CGk~i~Vt~~~~g~sv~v~VvD~C~---~~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v~C  141 (143)
                      -|..++|||.+|||+|+|+|.|++|   ..-||||.+|+++|+    -...|+.+|..+++.+
T Consensus       119 ~~t~v~VtNl~NgrsvvVRINDRGPf~~gRiIDlS~aAA~~l~----~~~~G~a~V~i~~l~~  177 (233)
T COG0797         119 LPTYVRVTNLDNGRSVVVRINDRGPFVSGRIIDLSKAAADKLG----MIRSGVAKVRIEVLGV  177 (233)
T ss_pred             CCCEEEEEEccCCcEEEEEEeCCCCCCCCcEeEcCHHHHHHhC----CccCceEEEEEEEecc
Confidence            6899999999999999999999997   458999999999998    6789999999998875

>PRK10672 rare lipoprotein A; Provisional

Probab=98.48  E-value=1.8e-06  Score=73.75  Aligned_cols=53  Identities=25%  Similarity=0.294  Sum_probs=44.4

Q ss_pred             CCcEEEEEECCCCcEEEEEEEeCCC---CCCCcCCHHHHHHHHhCCCCccccEEEEEEEE
Q 032285           82 CGRCLRVTNSGTGAQQIVRIVDQCA---NGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEF  138 (143)
Q Consensus        82 CGk~i~Vt~~~~g~sv~v~VvD~C~---~~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~  138 (143)
                      .|..++|||..|||+|+|+|.|++|   ..-||||++|+++|+-    ...++++|+.-.
T Consensus       115 lps~vrVtNl~ngrsvvVrVnDRGP~~~gRiiDLS~aAA~~Lg~----~~~~~V~ve~i~  170 (361)
T PRK10672        115 IPSYVRVTNLANGRMIVVRINDRGPYGPGRVIDLSRAAADRLNT----SNNTKVRIDPII  170 (361)
T ss_pred             CCCEEEEEECCCCcEEEEEEeCCCCCCCCCeeEcCHHHHHHhCC----CCCceEEEEEEe
Confidence            7999999999999999999999996   6699999999999972    334556655443

>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3

Probab=94.85  E-value=0.019  Score=45.78  Aligned_cols=57  Identities=26%  Similarity=0.511  Sum_probs=36.7

Q ss_pred             CCCcee--ccccccccccCCCCCCCCcCCCcEEEEEECC---CCcEEEEEEEeCC---CCCCCcCC
Q 032285           56 NKPLAW--RQKYGWTAFCHSGGPIGQAACGRCLRVTNSG---TGAQQIVRIVDQC---ANGGLDLD  113 (143)
Q Consensus        56 ~~~~~v--~~~~~~~Al~~~~~~~~~~~CGk~i~Vt~~~---~g~sv~v~VvD~C---~~~~LDLS  113 (143)
                      .++..|  ...|+|+|.+-... .....|++|++++.+.   .||+.+|+|+..-   +.++|||-
T Consensus        57 qqPwaVn~tlayGfaA~~~~G~-~e~~~Cc~Cy~LtFt~g~l~GKkmiVQ~tNtG~dlg~n~FDl~  121 (201)
T PF02015_consen   57 QQPWAVNDTLAYGFAAASITGG-SESSWCCACYELTFTSGPLKGKKMIVQVTNTGGDLGSNQFDLA  121 (201)
T ss_dssp             SS-EEEETTEEEEEEEEE-TT---HHHHTT-EEEEEE-SSTTTT-EEEEEEEEE-TTTTTTEEEEE
T ss_pred             CCCeEecCcceeeeeeeeecCC-CCCCcccceEEEEEcCCCcCCCEeEEEecccCCCCCCCeEEEE
Confidence            455555  45678888773332 3457899999999753   5899999999987   36777775

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	143
1bw3_A	125	Three-Dimensional Structure In Solution Of Barwin,		3e-43

>pdb|1BW3|A Chain A, Three-Dimensional Structure In Solution Of Barwin, A Protein From Barley Seed Length = 125

Iteration: 1
 Score =  170 bits (431), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 83/117 (70%), Positives = 92/117 (78%), Gaps = 3/117 (2%)
Query: 30  TYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLR 87
           TYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   GP GQAACG+CLR
Sbjct: 9   TYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLR 68
Query: 88  VTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 143
           VTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct: 69  VTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 125

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
1bw3_A	125	Barwin, basic barley SEED protein; lectin; NMR {Ho	3e-54
3d30_A	208	YOAJ, expansin like protein; peptidoglycan associa	4e-09

>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A Length = 125

 Score =  165 bits (419), Expect = 3e-54
 Identities = 87/125 (69%), Positives = 99/125 (79%), Gaps = 3/125 (2%)

Query: 22  QSASNVRATYHLYHPEQIGWDLT--AASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQ 79
           + A++VRATYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   GP GQ
Sbjct: 1   EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQ 60

Query: 80  AACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEF 138
           AACG+CLRVTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+F
Sbjct: 61  AACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQF 120

Query: 139 VNCND 143
           V+C D
Sbjct: 121 VDCRD 125

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208

 Score = 51.8 bits (124), Expect = 4e-09
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 9/72 (12%)

Query: 74  GGPIGQAACGRCLRVTNSGTGAQQIVRIVDQC---ANGGLDLDEGVFKKLDTNGIGYQQG 130
            G +  A  G  L V   G   +  V + D     A G LDL    F+K+       + G
Sbjct: 44  YGGVKAALAGSYLEVE--GPKGKTTVYVTDLYPEGARGALDLSPNAFRKIG----NMKDG 97

Query: 131 FLTVSYEFVNCN 142
            + + +  V   
Sbjct: 98  KINIKWRVVKAP 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
1bw3_A	125	Barwin, basic barley SEED protein; lectin; NMR {Ho	100.0
3d30_A	208	YOAJ, expansin like protein; peptidoglycan associa	99.88
2hcz_X	245	Beta-expansin 1A; domain 1 is A beta barrel and do	99.86
1n10_A	241	PHL P I, pollen allergen PHL P 1; plant allergen,	99.85
4avr_A	95	PA4485; unknown function, GRAM-negative bacteria,	99.68
1wc2_A	181	Endoglucanase; hydrolase, cellulase, cellulose, do	99.65
3m3g_A	120	EPL1 protein; fungal, plant defense, fungus, polys	99.51
3sul_A	122	Cerato-platanin-like protein; double PSI beta barr	99.41
3suk_A	125	Cerato-platanin-like protein; double PSI beta barr	99.41
3suj_A	127	Cerato-platanin 1; double PSI beta barrel, unknown	99.41
2kqa_A	129	Cerato-platanin; elicitor, secreted, toxin; NMR {C	99.37
3sum_A	136	Cerato-platanin-like protein; double PSI beta barr	99.27
2eng_A	210	Endoglucanase V; cellulose degradation, hydrolase	95.85

>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A

Probab=100.00  E-value=8.7e-41  Score=245.13  Aligned_cols=122  Identities=71%  Similarity=1.319  Sum_probs=114.4

Q ss_pred             ccCCceeEEEEEeCCCCccccCCC--CccccccCCCCCCceeccccccccccCCCCCCCCcCCCcEEEEEECCCCcEEEE
Q 032285           22 QSASNVRATYHLYHPEQIGWDLTA--ASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIV   99 (143)
Q Consensus        22 ~~~~~~~~t~t~y~~~~~~~~~~~--~~GaCG~~~~~~~~~v~~~~~~~Al~~~~~~~~~~~CGk~i~Vt~~~~g~sv~v   99 (143)
                      |.+++||+|||||+|++++|||+.  .+++|+.++.+.++.++++|+|+|+..+..|++++.||+||+|||+.||++|+|
T Consensus         1 ~~~~~~~~ty~~y~~~~~~~~~~~~~~s~~C~t~da~~~~~~~~~y~wtA~~g~~gp~~g~~CG~cv~Vtn~~nGksV~V   80 (125)
T 1bw3_A            1 EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITA   80 (125)
T ss_dssp             CEEEEEEEECCCSSCGGGTTCTTSTTTCCTTHHHHTTSCHHHHHHSCCEESCSTTCCCSGGGTTCEEEEEETTTTEEEEE
T ss_pred             CCccceEEEEEEecCCCcCcccccceeeEeeecccCCCceeEecCCCceEeccCCCCCCCcccCCEEEeEeCCCCCEEEE
Confidence            456789999999999999999988  899999999999988899999999999988899999999999999989999999


Q ss_pred             EEEeCCCCCCCcCC-HHHHHHHHhCCCCccccEEEEEEEEEecCC
Q 032285          100 RIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND  143 (143)
Q Consensus       100 ~VvD~C~~~~LDLS-~~aF~~l~~~g~~~~~G~i~I~W~~v~C~~  143 (143)
                      +|+|+||.++|||| ++||++|+.+|+++..|+++|+|+||+|+|
T Consensus        81 ~VvD~CP~ggLDLS~~~AF~~Ia~~g~G~~~G~i~V~w~~V~C~~  125 (125)
T 1bw3_A           81 RIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD  125 (125)
T ss_dssp             EEEECCSSSSCCSCSSSSHHHHCSSCHHHHHSEEEEEEEEECCCC
T ss_pred             EEEEeCCCCCCCCCCHHHHHHHhccCCcccCcEEEEEEEEEeCCC
Confidence            99999999999999 999999986665688999999999999997

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A

Probab=99.88  E-value=3.8e-23  Score=162.69  Aligned_cols=96  Identities=16%  Similarity=0.119  Sum_probs=80.1

Q ss_pred             ceeEEEEEeCCCCccccCCCCccccccCCCC-CCceeccccccccccCCCCCCCC----cCCCcEEEEEECCCCcEEEEE
Q 032285           26 NVRATYHLYHPEQIGWDLTAASAFCATWDAN-KPLAWRQKYGWTAFCHSGGPIGQ----AACGRCLRVTNSGTGAQQIVR  100 (143)
Q Consensus        26 ~~~~t~t~y~~~~~~~~~~~~~GaCG~~~~~-~~~~v~~~~~~~Al~~~~~~~~~----~~CGk~i~Vt~~~~g~sv~v~  100 (143)
                      ...++.|||.++..       .||||....+ .++++       |++.++| +++    +.||+||+|+++  +++|+|+
T Consensus         6 ~~~G~aT~Y~~g~~-------~GACG~~~~~~~~~~a-------Als~~~f-~~G~~~~~~CG~c~~v~~~--~gsv~V~   68 (208)
T 3d30_A            6 LHEGYATYTGSGYS-------GGAFLLDPIPSDMEIT-------AINPADL-NYGGVKAALAGSYLEVEGP--KGKTTVY   68 (208)
T ss_dssp             CEEEEEEECSTTSS-------SCTTCCCCCCTTCCEE-------EECHHHH-TGGGCTTTTTTCEEEEEET--TEEEEEE
T ss_pred             cEEEEEEEcCCCCC-------CCcCCCCCCCCCCEEE-------EeCHHHh-CCCCcCccccCCEEEEEeC--CCcEEEE
Confidence            34677888988632       6999987553 45666       8888888 544    799999999985  4599999


Q ss_pred             EEeCCC---CCCCcCCHHHHHHHHhCCCCccccEEEEEEEEEecC
Q 032285          101 IVDQCA---NGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCN  142 (143)
Q Consensus       101 VvD~C~---~~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v~C~  142 (143)
                      |+|+||   .+|||||+.||++|+    .+..|+++|+|++|+|+
T Consensus        69 v~D~CP~C~~~~~DLS~~aF~~la----~~~~G~i~v~~~~V~C~  109 (208)
T 3d30_A           69 VTDLYPEGARGALDLSPNAFRKIG----NMKDGKINIKWRVVKAP  109 (208)
T ss_dssp             EEEECTTCCTTCEEECHHHHHHHS----CGGGSSEEEEEEEECCC
T ss_pred             EEECCCCCCCCeEECCHHHHHHhc----ccCCCEEEEEEEEeCCC
Confidence            999995   689999999999998    67899999999999997

>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}

Probab=99.86  E-value=3e-22  Score=161.21  Aligned_cols=107  Identities=21%  Similarity=0.255  Sum_probs=84.6

Q ss_pred             CceeEEEEEeCCCCccccCCC--CccccccCCCC----CCceeccccccccccCCCCCCCCcCCCcEEEEEECC----CC
Q 032285           25 SNVRATYHLYHPEQIGWDLTA--ASAFCATWDAN----KPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSG----TG   94 (143)
Q Consensus        25 ~~~~~t~t~y~~~~~~~~~~~--~~GaCG~~~~~----~~~~v~~~~~~~Al~~~~~~~~~~~CGk~i~Vt~~~----~g   94 (143)
                      .+..++.|||.+.+.   .++  .+||||+.+..    ..+++       |++.++| +++..||+|++|++..    .+
T Consensus        18 ~w~~g~AT~Yg~~~~---~gt~~~gGACGyg~~~~~p~~~~~a-------Als~~lf-~~G~~CG~Cy~V~c~~~~~C~~   86 (245)
T 2hcz_X           18 KWLTARATWYGQPNG---AGAPDNGGACGIKNVNLPPYSGMTA-------CGNVPIF-KDGKGCGSCYEVRCKEKPECSG   86 (245)
T ss_dssp             CCEEEEEEECSCTTS---CSSTTSCCTTCCCCTTSTTTTTCEE-------EECHHHH-GGGTSTTCEEEEECCSSSSBCS
T ss_pred             ceeeeEEEEeCCCCC---CCcCCCCccCCCCCCCcCCCCCEEE-------EeCHHHc-CCchhcCCeEEEEeCCCCccCC
Confidence            355788899987632   122  36999998744    33444       9999999 8999999999999863    37


Q ss_pred             cEEEEEEEeCCC----CCCCcCCHHHHHHHHhCCCC---ccccEEEEEEEEEecC
Q 032285           95 AQQIVRIVDQCA----NGGLDLDEGVFKKLDTNGIG---YQQGFLTVSYEFVNCN  142 (143)
Q Consensus        95 ~sv~v~VvD~C~----~~~LDLS~~aF~~l~~~g~~---~~~G~i~I~W~~v~C~  142 (143)
                      ++|+|+|+|+|+    .+|||||+.||++|+..|++   +..|+++|+|++|+|+
T Consensus        87 ~sv~V~VtD~C~C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~  141 (245)
T 2hcz_X           87 NPVTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCK  141 (245)
T ss_dssp             SCEEEEEEEECCCTTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEEEEEEEECCC
T ss_pred             CCEEEEEEeccCCCCCCccEEcCHHHHHHHhccccccccccCCEEEEEEEEEecC
Confidence            899999999983    57999999999999832111   6789999999999997

>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3

Probab=99.85  E-value=5.4e-22  Score=159.41  Aligned_cols=111  Identities=20%  Similarity=0.237  Sum_probs=81.3

Q ss_pred             CceeEEEEEeCCCCccccCCC--CccccccCCCCCCceeccccccccccCCCCCCCCcCCCcEEEEEECCC----CcEEE
Q 032285           25 SNVRATYHLYHPEQIGWDLTA--ASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGT----GAQQI   98 (143)
Q Consensus        25 ~~~~~t~t~y~~~~~~~~~~~--~~GaCG~~~~~~~~~v~~~~~~~Al~~~~~~~~~~~CGk~i~Vt~~~~----g~sv~   98 (143)
                      .+..++.|||.+.+.   .++  .+||||+.+.++..   .....+|++.++| +++..||+|++|+++..    +++|+
T Consensus        18 ~w~~g~AT~Yg~~~~---~gt~~~gGACGyg~~~~~~---~g~~~aAls~~lf-~~G~~CG~CyeV~c~~~~~C~~~~v~   90 (241)
T 1n10_A           18 KWLDAKSTWYGKPTG---AGPKDNGGACGYKDVDKPP---FSGMTGCGNTPIF-KSGRGCGSCFEIKCTKPEACSGEPVV   90 (241)
T ss_dssp             SCEEEEEEEEC-------------CCTTCCCCTTSTT---TTTCEEEECHHHH-GGGTTSSCEEEEEECSSTTBCSCCEE
T ss_pred             CceeeEEEEeCCCCC---CCcCCCCeeCCCCCcCcCC---CCcEEEEeCHHHc-cCcccCCCeEEEEeCCCCccCCCCEE
Confidence            456788899987632   222  36999998743221   0011248999999 89999999999999642    67999


Q ss_pred             EEEEeCC----CCCCCcCCHHHHHHHHhCCCC---ccccEEEEEEEEEecC
Q 032285           99 VRIVDQC----ANGGLDLDEGVFKKLDTNGIG---YQQGFLTVSYEFVNCN  142 (143)
Q Consensus        99 v~VvD~C----~~~~LDLS~~aF~~l~~~g~~---~~~G~i~I~W~~v~C~  142 (143)
                      |+|+|+|    +.+|||||+.||.+|+..|++   +..|+++|+|++|+|+
T Consensus        91 V~VtD~C~C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~  141 (241)
T 1n10_A           91 VHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCK  141 (241)
T ss_dssp             EEEEEECSSCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCC
T ss_pred             EEEeEecCCCCCCcceecCHHHHHHhhccCcccccccCCEEEEEEEEEeCC
Confidence            9999998    357999999999999832111   6789999999999997

>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01}

Probab=99.68  E-value=1.9e-16  Score=110.92  Aligned_cols=90  Identities=19%  Similarity=0.185  Sum_probs=71.7

Q ss_pred             eEEEEEeCCCCccccCCCCccccccCCCCCCceeccccccccccCCCCCCCCcCCCcEEEEEECCCCcEEEEEEEeCCC-
Q 032285           28 RATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCA-  106 (143)
Q Consensus        28 ~~t~t~y~~~~~~~~~~~~~GaCG~~~~~~~~~v~~~~~~~Al~~~~~~~~~~~CGk~i~Vt~~~~g~sv~v~VvD~C~-  106 (143)
                      .+..+||.+.     +....+|||.......+.+       | .. ..|     ||..++|||..|||+|+|+|.|+|| 
T Consensus         3 ~G~ASwYg~~-----f~G~~TA~Ge~~~~~~~tA-------A-H~-tlP-----~gt~vrVtNl~nGksVvVrVnDRGP~   63 (95)
T 4avr_A            3 TGEASYYGSR-----HAGLRTASGERYNPNAMTA-------A-HR-TLP-----FGARVRVTNLDNRRSVVVRINDRGPF   63 (95)
T ss_dssp             EEEEEECCGG-----GTTSBCTTSCBCCTTSCEE-------E-CS-SSC-----TTCEEEEEETTTCCEEEEEEEECCCC
T ss_pred             EEEEEEECCc-----cCCCCCCCccCcCCCCCEE-------E-cC-CCC-----CCcEEEEEECCCCcEEEEEEccCCCC
Confidence            3556789885     2223589999877766654       2 21 233     9999999999999999999999997 


Q ss_pred             --CCCCcCCHHHHHHHHhCCCCccccEEEEEEEEEe
Q 032285          107 --NGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVN  140 (143)
Q Consensus       107 --~~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v~  140 (143)
                        ...||||++||++|+    ....|+.+|+|++++
T Consensus        64 ~~griIDLS~aAa~~Lg----~~~~G~~~V~ve~~~   95 (95)
T 4avr_A           64 RRGRIIDVSRKAAEGLG----MIRSGVAPVRIESLD   95 (95)
T ss_dssp             STTEEEEECHHHHHHHT----CTTTSCEEEEEEEC-
T ss_pred             CCCCEEEeCHHHHHHhC----CcCCCEEEEEEEEeC
Confidence              468999999999998    678999999999875

>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1

Probab=99.65  E-value=2.3e-17  Score=127.04  Aligned_cols=102  Identities=23%  Similarity=0.345  Sum_probs=75.7

Q ss_pred             eeEEEEEeCCCCccccCCCCccccccCCCCCCceecccc--ccccccCCCCCCCC------cCCCcEEEEEEC-------
Q 032285           27 VRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKY--GWTAFCHSGGPIGQ------AACGRCLRVTNS-------   91 (143)
Q Consensus        27 ~~~t~t~y~~~~~~~~~~~~~GaCG~~~~~~~~~v~~~~--~~~Al~~~~~~~~~------~~CGk~i~Vt~~-------   91 (143)
                      ..++.|||....        .||||+...+.+-.....|  .-+|++.++| +++      ..||+|++|++.       
T Consensus        15 ~~A~aT~Yg~~~--------gGACGyG~~~~~~l~~~gyg~~tAALStaLF-n~G~~~w~G~~CG~Cyel~c~~~~c~~c   85 (181)
T 1wc2_A           15 SCASTTNYHDSH--------KGACGCGPASGDAQFGWNAGSFVAAASQMYF-DSGNKGWCGQHCGQCIKLTTTGGYVPGQ   85 (181)
T ss_dssp             EEEEEEEECCCB--------CTTTTCSCSSSSBCCSSGGGSCEEEEEHHHH-CTTCCSSSCTTTTCEEEEEEEEEECTTS
T ss_pred             cccceeEecCCC--------CcccCcCcCCCCCccccCCcceeeecCHHHh-CCCccccccccCCCcEEEEcCCCCcccc
Confidence            347778887652        5999998432211101111  1358888899 665      899999999952       


Q ss_pred             ----CCCcEEEEEEEeCCCC-----------------------CCCcCCHHHHHHHHhCCCCccccEEEEEEEEEecC
Q 032285           92 ----GTGAQQIVRIVDQCAN-----------------------GGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCN  142 (143)
Q Consensus        92 ----~~g~sv~v~VvD~C~~-----------------------~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v~C~  142 (143)
                          ..|++|+|+|+|.||+                       .|||||+.+ .+|+    .+..|+++|+|+.|+|+
T Consensus        86 g~~~~~g~SI~VtaTN~CPpn~~nggWCn~pp~~~~~n~~G~~~HFDLs~pa-~~Ia----~~~~GivpV~yrrV~C~  158 (181)
T 1wc2_A           86 GGPVREGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELHLDLENGR-SQVT----GMGWNNPETTWEVVNCD  158 (181)
T ss_dssp             CCCCCTTCEEEEEEEEEECSSTTSTTTSCCSSSSSCCCTTSCSEEEEEECTT-STTG----GGTCSSEEEEEEEECHH
T ss_pred             cccCCCCCeEEEEEecCCCCCCCCCCccCCCcccCcccccCccccccccchH-HHhh----hhcCCCceeEEEEEeCC
Confidence                2377999999999972                       499999999 8887    57789999999999995

>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens}

Probab=99.51  E-value=2.7e-14  Score=103.73  Aligned_cols=99  Identities=19%  Similarity=0.341  Sum_probs=79.3

Q ss_pred             eCCCCccccCCCCccccccCCCCCCceeccccccccccC-CCCC----------CCCcCCCcEEEEEECCCCcEEEEEEE
Q 032285           34 YHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCH-SGGP----------IGQAACGRCLRVTNSGTGAQQIVRIV  102 (143)
Q Consensus        34 y~~~~~~~~~~~~~GaCG~~~~~~~~~v~~~~~~~Al~~-~~~~----------~~~~~CGk~i~Vt~~~~g~sv~v~Vv  102 (143)
                      |++.+++-+...+..+|+...++..    .+|+|..+.. +.||          +|++.||+|+++++  +||+|.+..+
T Consensus         5 yd~~YD~~~~sl~~vaCsdg~nGL~----tk~g~~t~g~lp~FP~IGg~~~i~gwns~~CGtC~~lty--~g~si~vlaI   78 (120)
T 3m3g_A            5 YDTGYDNGSRSLNDVSCSDGPNGLE----TRYHWSTQGQIPRFPYIGGAAAVAGWNSASCGTCWKLQY--SGHTIYVLAV   78 (120)
T ss_dssp             ECGGGGCTTCBGGGSSSSSSTTSHH----HHHCCCBGGGSTTTTSEEEETTCCSTTCTTTTCEEEEEE--TTEEEEEEEE
T ss_pred             ecCCCCCCCCccceEEecCCCCccc----cccCCcccccCCCCCccccccccccCCCCCCCceEEEEE--CCeEEEEEEE
Confidence            5777666667777899999876532    3455555543 3444          58999999999998  6999999999


Q ss_pred             eCCCCCCCcCCHHHHHHHHhCCCCccccEEEEEEEEEe
Q 032285          103 DQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVN  140 (143)
Q Consensus       103 D~C~~~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v~  140 (143)
                      |.- .+++++|++||+.|. +|+....|+|+++|++|+
T Consensus        79 D~a-~~Gfnis~~A~n~LT-~G~a~~lG~V~a~~~~V~  114 (120)
T 3m3g_A           79 DHA-ASGFNIALDAMNALT-GGQAVQLGRVSATATQVP  114 (120)
T ss_dssp             EEC-SSSEEECHHHHHHHH-TSCHHHHCEEECEEEEEC
T ss_pred             ecC-CCceeecHHHHHHhh-CCcceeeeeEeEEEEEcC
Confidence            998 667999999999995 777888899999999986

>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa}

Probab=99.41  E-value=9.8e-13  Score=95.77  Aligned_cols=101  Identities=25%  Similarity=0.373  Sum_probs=76.6

Q ss_pred             EeCCCCccccCCCCccccccCCCCCCceecccccccc-------ccC--CCCCCCCcCCCcEEEEEECCCCcEEEEEEEe
Q 032285           33 LYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTA-------FCH--SGGPIGQAACGRCLRVTNSGTGAQQIVRIVD  103 (143)
Q Consensus        33 ~y~~~~~~~~~~~~~GaCG~~~~~~~~~v~~~~~~~A-------l~~--~~~~~~~~~CGk~i~Vt~~~~g~sv~v~VvD  103 (143)
                      -|++.+++-+...+.-+|+...++...    + +|..       +.+  ..-.++++.||+|+++++..+||+|.+..+|
T Consensus         7 syd~~YD~~~~sl~~vaCSdg~nGl~t----k-g~~t~g~lp~FIGg~~~V~gwnS~~CGtC~~lty~~~g~si~vlaID   81 (122)
T 3sul_A            7 QYDPVYDNADQSFGTVACSDGPNGMLT----K-GYSTFGSVPSYVGAVDTITGWNSESCGTCYQITWSGTGKTIHVVGVD   81 (122)
T ss_dssp             EECGGGGCTTCBGGGSSSSSSTTSTTT----T-TCCBGGGSSSEEEEETTCCSTTCTTTTCEEEEEETTTTEEEEEEEEE
T ss_pred             EecCCCCCCCCccceEEecCCCCcccc----C-CCccccccccccccccccccCCCCCCCceEEEEEcCCCcEEEEEEEe
Confidence            357776666777788999997655321    1 2222       211  1101467999999999996669999999999


Q ss_pred             CCCCCCCcCCHHHHHHHHhCCCCccccEEEEEEEEEe
Q 032285          104 QCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVN  140 (143)
Q Consensus       104 ~C~~~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v~  140 (143)
                      .- .+++|++.+||+.| ++|+....|+|+++|++|+
T Consensus        82 ~a-~~Gfnis~~Amn~L-T~G~a~~lG~V~a~~~qV~  116 (122)
T 3sul_A           82 VA-GNGFNVGQRAMDDL-TNGQAVALGNIDVTATLVD  116 (122)
T ss_dssp             EC-SSSEEECHHHHHHH-HTSCHHHHSEEEEEEEEEC
T ss_pred             cC-CCceeehHHHHHHh-cCCcceecceEeEEEEEcC
Confidence            98 66799999999999 4677888899999999986

>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}

Probab=99.41  E-value=7e-13  Score=96.94  Aligned_cols=98  Identities=18%  Similarity=0.302  Sum_probs=76.1

Q ss_pred             EeCCCCccccCCCCccccccCCCCCCceeccccccccccC-CCCC----------CCCcCCCcEEEEEECCCC----cEE
Q 032285           33 LYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCH-SGGP----------IGQAACGRCLRVTNSGTG----AQQ   97 (143)
Q Consensus        33 ~y~~~~~~~~~~~~~GaCG~~~~~~~~~v~~~~~~~Al~~-~~~~----------~~~~~CGk~i~Vt~~~~g----~sv   97 (143)
                      -|++.+++-+...+.-+|+...++...    +  |..+.. +.||          +|++.||+|+++++  +|    |+|
T Consensus         7 syd~~YD~~~~sl~~vaCSdg~nGL~t----k--y~t~g~lp~FP~IGg~~~i~gwnS~~CGtC~~lty--~g~~~~~si   78 (125)
T 3suk_A            7 RFDNTYDNASGSMNTVACSTGANGLSQ----R--FPTFGSVPTFPHIGASSDIGGFNSPACGNCYTISF--TFQGVTRSI   78 (125)
T ss_dssp             EECGGGGCTTCBGGGSSSSSSTTCCTT----T--CSBGGGSTTTTSEEEETTCCSTTCTTTTCEEEEEE--EETTEEEEE
T ss_pred             EecCCCCCCCCccceEEecCCCCCcee----c--cccccccCCCCeeccccccccCCCCCCCeeEEEEE--cCCCcceEE
Confidence            357777767777788999998766431    1  222221 2232          58999999999998  35    999


Q ss_pred             EEEEEeCCCCCCCcCCHHHHHHHHhCCCCccccEEEEEEEEEe
Q 032285           98 IVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVN  140 (143)
Q Consensus        98 ~v~VvD~C~~~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v~  140 (143)
                      .+..+|.- .+++++|++||+.| ++|+....|+|+++|++|+
T Consensus        79 ~vlaID~a-~~Gfnis~~Amn~L-T~G~a~~lG~V~~~~~~V~  119 (125)
T 3suk_A           79 NLVAIDHA-GNGFNVAQAAMDEL-TNGNAVALGTIDVQSQQVA  119 (125)
T ss_dssp             EEEEEEEC-SSSEEECHHHHHHH-HTSCHHHHCEEEEEEEEEC
T ss_pred             EEEEEecC-CCceeecHHHHHHh-cCCcccccceEeEEEEEcC
Confidence            99999998 56799999999999 4677788899999999986

>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}

Probab=99.41  E-value=8.2e-13  Score=96.78  Aligned_cols=97  Identities=20%  Similarity=0.302  Sum_probs=75.8

Q ss_pred             eCCCCccccCCCCccccccCCCCCCceeccccccccccC-CCCC----------CCCcCCCcEEEEEECCCC-----cEE
Q 032285           34 YHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCH-SGGP----------IGQAACGRCLRVTNSGTG-----AQQ   97 (143)
Q Consensus        34 y~~~~~~~~~~~~~GaCG~~~~~~~~~v~~~~~~~Al~~-~~~~----------~~~~~CGk~i~Vt~~~~g-----~sv   97 (143)
                      |++.+++-+...+..+|+...++...    +  |..+.. +.||          +|++.||+|++++++  |     |+|
T Consensus         7 yd~~YD~~~~sl~~vaCSdg~nGL~t----k--y~t~g~lp~FP~IGg~~~i~gwns~~CGtC~~lty~--g~~~~~~si   78 (127)
T 3suj_A            7 YDEAYDNPSSSLLSVTCSDGENGLYP----K--YRTFGDLPGFPCIGGSSDIAGYNSPNCGSCYQLTYS--SAHTTPKSI   78 (127)
T ss_dssp             ECGGGGCTTSBGGGSSSCSSTTCCTT----T--SCBGGGSTTTTSEEEETTCCSTTCTTTTCEEEEEEC--CSSSCCEEE
T ss_pred             ecCCCCCCCCeeeeEEecCCCCccee----c--cccccccCCCCeeccccccccCCCCCCCceEEEEEC--CCCCcceEE
Confidence            57777766777788999998766432    2  222221 2233          589999999999985  5     999


Q ss_pred             EEEEEeCCCCCCCcCCHHHHHHHHhCCCCccccEEEEEEEEEe
Q 032285           98 IVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVN  140 (143)
Q Consensus        98 ~v~VvD~C~~~~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v~  140 (143)
                      .+..+|.- .+++++|++||+.|. +|+....|+|+++|++|+
T Consensus        79 ~vlaID~a-~~Gfnis~~Amn~LT-~g~a~~lG~V~~~~~~V~  119 (127)
T 3suj_A           79 YMVAIDRS-AEGFTASKQAMDDLT-NKRAEELGTVNVDVRKVD  119 (127)
T ss_dssp             EEEEEEEC-SSSEEECHHHHHHHH-TSCHHHHSSEEEEEEEEC
T ss_pred             EEEEEecC-CCceeecHHHHHHhc-CCccccceeEEEEEEEeC
Confidence            99999998 567999999999994 677888899999999986

>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani}

Probab=99.37  E-value=2e-12  Score=94.71  Aligned_cols=95  Identities=28%  Similarity=0.495  Sum_probs=73.7

Q ss_pred             eCCCCccccCCCCccccccCCCCCCceeccccccccccC-CCCC----------CCCcCCCcEEEEEECCCCcEEEEEEE
Q 032285           34 YHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCH-SGGP----------IGQAACGRCLRVTNSGTGAQQIVRIV  102 (143)
Q Consensus        34 y~~~~~~~~~~~~~GaCG~~~~~~~~~v~~~~~~~Al~~-~~~~----------~~~~~CGk~i~Vt~~~~g~sv~v~Vv  102 (143)
                      |++.++ .+...+..+|+...++...    +  |..+.. |.||          +|++.||+|++|+++ +||+|.+..+
T Consensus        14 yD~~YD-~~~sl~~vaCSdG~nGL~t----k--y~t~g~lp~FP~IGga~~iagWNS~~CGtC~~lty~-ng~sI~vlaI   85 (129)
T 2kqa_A           14 YDPIYA-ADLSMGSVACSNGDHGLMA----Q--YPTLGEVPGFPNVGGIPDIAGWDSPSCGTCWKVTIP-NGNSIFIRGV   85 (129)
T ss_dssp             ECSSCS-TTCBGGGSSCCSTTTCSTT----T--CSBSSSSSCSSSEEEETTCCSTTCTTCSCEEEEEET-TTEEEEEEEE
T ss_pred             ecCCcC-CCCccceEEecCCCCCcee----c--CcccccCCCCCeeccchhhccCCCCCCCceEEEEEc-CCCEEEEEEE
Confidence            477766 5566678899998766421    1  223332 3333          579999999999997 7999999999


Q ss_pred             eCCCCCCCcCCHHHHHHHHhCCCCccccEE-EEEEEEEe
Q 032285          103 DQCANGGLDLDEGVFKKLDTNGIGYQQGFL-TVSYEFVN  140 (143)
Q Consensus       103 D~C~~~~LDLS~~aF~~l~~~g~~~~~G~i-~I~W~~v~  140 (143)
                      |.- .+.++++++||++|.. |  ...|++ +++|++|+
T Consensus        86 D~A-~~gFnIs~~Amn~LT~-G--~~lG~V~~a~~~qV~  120 (129)
T 2kqa_A           86 DSG-RGGFNVNPTAFTKLVG-S--TEAGRVDNVNYVQVD  120 (129)
T ss_dssp             EEC-SSSEEECHHHHHHHHS-S--SSSCCBCSCEEEECC
T ss_pred             ccC-CCceeehHHHHHHhcC-C--cccCcEeEEEEEEcC
Confidence            999 4689999999999964 3  779999 99999986

>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa}

Probab=99.27  E-value=1.2e-11  Score=91.16  Aligned_cols=96  Identities=22%  Similarity=0.287  Sum_probs=72.4

Q ss_pred             eCCCCccccCCCCccccccCCCCCCceecccc-----cc-ccccC-CCCC------CCCcCCCcEEEEEECCCCcEEEEE
Q 032285           34 YHPEQIGWDLTAASAFCATWDANKPLAWRQKY-----GW-TAFCH-SGGP------IGQAACGRCLRVTNSGTGAQQIVR  100 (143)
Q Consensus        34 y~~~~~~~~~~~~~GaCG~~~~~~~~~v~~~~-----~~-~Al~~-~~~~------~~~~~CGk~i~Vt~~~~g~sv~v~  100 (143)
                      |++.+++-+...+..+|+.      +  ..+|     +| ..+.. +.||      ++++.||.|++|++  +|++|.+.
T Consensus         7 yd~~YD~~~~sls~vaCS~------l--~~ky~~~~~g~~~t~g~lp~FP~igg~~wns~~CGtCwkLtY--~G~sI~vl   76 (136)
T 3sum_A            7 WDDKFQNDTLSISEFKCSA------A--LAKLGPDPKHPPTKLGEVLNFPHFVAAPEAQTECGSCWKLRY--KGNHAFVT   76 (136)
T ss_dssp             ECGGGGCTTSBGGGSTTHH------H--HHTCSSSSSSCCSBGGGSTTTTSEEECCBTTBCTTCEEEEEE--TTEEEEEE
T ss_pred             ecCCCCCCCCeeeeEEHHH------H--HhhccccccCccccccccCCCCcccccccCCCCCCceEEEEE--CCeEEEEE
Confidence            4666666667777899987      2  2343     34 33332 2332      58999999999998  58999999


Q ss_pred             EEeCCCCCC-CcCCHHHHHHHHhCCC----CccccEEEE-EEEEEe
Q 032285          101 IVDQCANGG-LDLDEGVFKKLDTNGI----GYQQGFLTV-SYEFVN  140 (143)
Q Consensus       101 VvD~C~~~~-LDLS~~aF~~l~~~g~----~~~~G~i~I-~W~~v~  140 (143)
                      .+|.-+.+. +|+|.+||+.| ++|+    +...|+|++ +|++|+
T Consensus        77 aID~a~~g~~FnIs~~Amn~L-T~G~~a~~a~elG~Vda~~~~qVd  121 (136)
T 3sum_A           77 VVDRVEEANLFVGGTDLVKNL-TTFNGAPEGYDWGTAQLFSAYQVD  121 (136)
T ss_dssp             EEECCCSTTEEEECHHHHHHH-TCBTTBCHHHHHSEEECSEEEEEC
T ss_pred             EEecCCCcceEeehHHHHHHH-hCCCccccceecceeeeeEEEEcC
Confidence            999994433 99999999999 4666    567799999 999986

>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A

Probab=95.85  E-value=0.0054  Score=47.95  Aligned_cols=57  Identities=21%  Similarity=0.373  Sum_probs=40.3

Q ss_pred             CCCcee--ccccccccccCCCCCCCCcCCCcEEEEEECC---CCcEEEEEEEeCC---CCCCCcCC
Q 032285           56 NKPLAW--RQKYGWTAFCHSGGPIGQAACGRCLRVTNSG---TGAQQIVRIVDQC---ANGGLDLD  113 (143)
Q Consensus        56 ~~~~~v--~~~~~~~Al~~~~~~~~~~~CGk~i~Vt~~~---~g~sv~v~VvD~C---~~~~LDLS  113 (143)
                      .++..|  ...|+|+|.+-... .....|++|++++.+.   .||+.+|+|+...   ..++|||-
T Consensus        59 q~PwaVndtlayGFaA~~~~g~-~e~~~Cc~C~~LtFt~~~~~GKkmiVQ~TNtG~Dl~~n~FDl~  123 (210)
T 2eng_A           59 QTPWAVNDDFALGFAATSIAGS-NEAGWCCACYELTFTSGPVAGKKMVVQSTSTGGDLGSNHFDLN  123 (210)
T ss_dssp             SSCEEEETTEEEEEEEEECTTC-CHHHHTTCEEEEEECSGGGTTCEEEEEEEEC-----CCEEEEE
T ss_pred             CCCeEecCccceeeeeeeccCC-ccccccceeEEEEEcCCCcCCCEEEEEEecccCCCCCCceeEe
Confidence            355555  46678888764332 3457899999999764   5899999999998   36677763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d1bw3a_	125	b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [Ta	1e-69

>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 125

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Barwin
domain: Barwin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  203 bits (519), Expect = 1e-69
 Identities = 87/125 (69%), Positives = 99/125 (79%), Gaps = 3/125 (2%)

Query: 22  QSASNVRATYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQ 79
           + A++VRATYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   GP GQ
Sbjct: 1   EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQ 60

Query: 80  AACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEF 138
           AACG+CLRVTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+F
Sbjct: 61  AACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQF 120

Query: 139 VNCND 143
           V+C D
Sbjct: 121 VDCRD 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d1bw3a_	125	Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}	100.0
d1n10a2	143	Pollen allergen PHL P 1 N-terminal domain {Timothy	99.86
d1wc2a1	180	Endoglucanase (CMCase) {Blue mussel (Mytilus eduli	99.77
d2enga_	210	Endoglucanase V (Eng V) {Humicola insolens [TaxId:	94.88

>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Barwin
domain: Barwin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=1.2e-35  Score=211.41  Aligned_cols=122  Identities=71%  Similarity=1.319  Sum_probs=114.8

Q ss_pred             ccCCceeEEEEEeCCCCccccCC--CCccccccCCCCCCceeccccccccccCCCCCCCCcCCCcEEEEEECCCCcEEEE
Q 032285           22 QSASNVRATYHLYHPEQIGWDLT--AASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIV   99 (143)
Q Consensus        22 ~~~~~~~~t~t~y~~~~~~~~~~--~~~GaCG~~~~~~~~~v~~~~~~~Al~~~~~~~~~~~CGk~i~Vt~~~~g~sv~v   99 (143)
                      |.+++||+|||||+|..++|||+  ..+-.|+.++++.++.|+++|+|+|+..|--|.+.+.||||++|||+.||+++++
T Consensus         1 q~a~nVRaTYh~Ynp~~~~wdl~~~a~sayCatwDa~kpL~wr~kygWtAfCgp~gp~gq~sCGkclrvTN~atga~~~~   80 (125)
T d1bw3a_           1 EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITA   80 (125)
T ss_dssp             CEEEEEEEECCCSSCGGGTTCTTSTTTCCTTHHHHTTSCHHHHHHSCCEESCSTTCCCSGGGTTCEEEEEETTTTEEEEE
T ss_pred             CCcccceeEEEeccccccCcccchhhhhhheecccCCCccccccCCCCeEEecCCCCcCcccccceEEeeecccCcEEEE
Confidence            45679999999999999999997  3467899999999999999999999999877788999999999999999999999


Q ss_pred             EEEeCCCCCCCcCC-HHHHHHHHhCCCCccccEEEEEEEEEecCC
Q 032285          100 RIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND  143 (143)
Q Consensus       100 ~VvD~C~~~~LDLS-~~aF~~l~~~g~~~~~G~i~I~W~~v~C~~  143 (143)
                      +|||+|..++|||. +.+|++|.++|++...|.+.|.++||+|.|
T Consensus        81 RiVDqCsngGlDLD~~~vFn~iDtdG~G~~~Ghl~V~y~fV~C~d  125 (125)
T d1bw3a_          81 RIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD  125 (125)
T ss_dssp             EEEECCSSSSCCSCSSSSHHHHCSSCHHHHHSEEEEEEEEECCCC
T ss_pred             EEeecccCCCCccccHhhhheecCCCcccccccEEEEEEEecCCC
Confidence            99999999999999 889999999999999999999999999987

>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=99.86  E-value=1.4e-22  Score=149.72  Aligned_cols=111  Identities=18%  Similarity=0.249  Sum_probs=82.7

Q ss_pred             cCCceeEEEEEeCCCCccccCCCCccccccCCCCC----CceeccccccccccCCCCCCCCcCCCcEEEEEECCC----C
Q 032285           23 SASNVRATYHLYHPEQIGWDLTAASAFCATWDANK----PLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGT----G   94 (143)
Q Consensus        23 ~~~~~~~t~t~y~~~~~~~~~~~~~GaCG~~~~~~----~~~v~~~~~~~Al~~~~~~~~~~~CGk~i~Vt~~~~----g   94 (143)
                      ...+..++.|||...+. ..-...+||||+.+...    .++       +|++.++| +++..||+|++|+++.+    +
T Consensus        14 ~~~w~~g~AT~Yg~~~~-~~~~~~gGACGyg~~~~~p~g~~~-------aAls~~l~-~~g~~CG~cyev~c~~~~~c~~   84 (143)
T d1n10a2          14 GDKWLDAKSTWYGKPTG-AGPKDNGGACGYKDVDKPPFSGMT-------GCGNTPIF-KSGRGCGSCFEIKCTKPEACSG   84 (143)
T ss_dssp             CCSCEEEEEEEEC-----------CCTTCCCCTTSTTTTTCE-------EEECHHHH-GGGTTSSCEEEEEECSSTTBCS
T ss_pred             CCCcEeeEEeEeCCCCC-CCCCCCcccCCCCCcccCCCcceE-------EEeCHhHc-cCCCcCCcceEeEcCCCCcccC
Confidence            45677899999976422 11112369999986543    244       49999999 89999999999999753    5


Q ss_pred             cEEEEEEEeCCC----CCCCcCCHHHHHHHHhCCCC---ccccEEEEEEEEEecC
Q 032285           95 AQQIVRIVDQCA----NGGLDLDEGVFKKLDTNGIG---YQQGFLTVSYEFVNCN  142 (143)
Q Consensus        95 ~sv~v~VvD~C~----~~~LDLS~~aF~~l~~~g~~---~~~G~i~I~W~~v~C~  142 (143)
                      ++|+|+|+|.|+    .+|||||+.||.+|+..++.   +..|+++|+|+.|+|.
T Consensus        85 ~sv~V~vtd~c~~~~~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~  139 (143)
T d1n10a2          85 EPVVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCK  139 (143)
T ss_dssp             CCEEEEEEEECSSCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCC
T ss_pred             CCEEEEEEecccCCCCCccccCCHHHHhhhccccchhhheecCccceEEEEEecc
Confidence            899999999984    45899999999999843211   3579999999999996

>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=99.77  E-value=3.3e-20  Score=141.38  Aligned_cols=103  Identities=22%  Similarity=0.362  Sum_probs=77.5

Q ss_pred             ceeEEEEEeCCCCccccCCCCccccccCCCCCCceeccccc--cccccCCCCCCC------CcCCCcEEEEEEC------
Q 032285           26 NVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYG--WTAFCHSGGPIG------QAACGRCLRVTNS------   91 (143)
Q Consensus        26 ~~~~t~t~y~~~~~~~~~~~~~GaCG~~~~~~~~~v~~~~~--~~Al~~~~~~~~------~~~CGk~i~Vt~~------   91 (143)
                      +-.++.|||....        .||||+.+...+......|+  .+|++.++| ++      +..||+|++|++.      
T Consensus        14 ~~~A~aT~Ygd~~--------~GACGyG~~~~~~~~~~g~G~~tAAlS~~lf-~~~~~~~~G~~CG~CyeV~C~~~~~~~   84 (180)
T d1wc2a1          14 KSCASTTNYHDSH--------KGACGCGPASGDAQFGWNAGSFVAAASQMYF-DSGNKGWCGQHCGQCIKLTTTGGYVPG   84 (180)
T ss_dssp             EEEEEEEEECCCB--------CTTTTCSCSSSSBCCSSGGGSCEEEEEHHHH-CTTCCSSSCTTTTCEEEEEEEEEECTT
T ss_pred             ccccceEEeCCCC--------CCCCCCCcCCCCCccccCCcceEeeccHHHh-cCCcccccccccCCEEEEEECCCCCCc
Confidence            3457788897542        49999987644321111111  358888888 66      7899999999863      


Q ss_pred             -----CCCcEEEEEEEeCCCC---C--------------------CCcCCHHHHHHHHhCCCCccccEEEEEEEEEecC
Q 032285           92 -----GTGAQQIVRIVDQCAN---G--------------------GLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCN  142 (143)
Q Consensus        92 -----~~g~sv~v~VvD~C~~---~--------------------~LDLS~~aF~~l~~~g~~~~~G~i~I~W~~v~C~  142 (143)
                           ..|++|+|+|+|.||+   +                    |||||+ +|.+|+    ....|+|+|+|+.|+|+
T Consensus        85 ~~~~~~~g~sV~V~iTd~CP~n~~n~gWCn~p~~~~~~n~~g~~~HFDLs~-af~~ia----~~~~G~v~V~yrrV~C~  158 (180)
T d1wc2a1          85 QGGPVREGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELHLDLEN-GRSQVT----GMGWNNPETTWEVVNCD  158 (180)
T ss_dssp             SCCCCCTTCEEEEEEEEEECSSTTSTTTSCCSSSSSCCCTTSCSEEEEEEC-TTSTTG----GGTCSSEEEEEEEECHH
T ss_pred             cCCCCCCCCcEEEEEEecCCCCCCCCCccCCccccccccccCcccceechH-HHHHHh----hhcCCcceeEEEEeeCC
Confidence                 2478999999999973   1                    999985 999998    67889999999999995

>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase V (Eng V)
species: Humicola insolens [TaxId: 34413]

Probab=94.88  E-value=0.0083  Score=45.00  Aligned_cols=56  Identities=21%  Similarity=0.353  Sum_probs=39.1

Q ss_pred             CCcee--ccccccccccCCCCCCCCcCCCcEEEEEEC---CCCcEEEEEEEeCC---CCCCCcCC
Q 032285           57 KPLAW--RQKYGWTAFCHSGGPIGQAACGRCLRVTNS---GTGAQQIVRIVDQC---ANGGLDLD  113 (143)
Q Consensus        57 ~~~~v--~~~~~~~Al~~~~~~~~~~~CGk~i~Vt~~---~~g~sv~v~VvD~C---~~~~LDLS  113 (143)
                      .+..|  ...|+|+|.+-... ..+..|.+|++++-+   -+||+.+|+|+..-   ..++|||.
T Consensus        60 ~PwAVnd~layGfAA~~~~g~-~e~~~Cc~Cy~LtFTs~~~~GKkMiVQ~tNTGgDlg~n~FDl~  123 (210)
T d2enga_          60 TPWAVNDDFALGFAATSIAGS-NEAGWCCACYELTFTSGPVAGKKMVVQSTSTGGDLGSNHFDLN  123 (210)
T ss_dssp             SCEEEETTEEEEEEEEECTTC-CHHHHTTCEEEEEECSGGGTTCEEEEEEEEC-----CCEEEEE
T ss_pred             CCeeecCcceeeeeeeeecCC-CccccccccEEEEeecCCcCCCEEEEEEeccCCccCCCeeeEe
Confidence            44444  35677877765433 356789999999976   46999999999987   35666664