Citrus Sinensis ID: 032301

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
MGSLWRAISGQTNQLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSEIVDYDSKR
Secondary Structure (PSIPRED)
cHHHHHHHHcccccccccccccccccccEEEEEEEEccccccEEEEEEEEEccEEEEEEEccccccccccEEEEcccEEEEEccccccccccEEEEEcccEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHccccccccccccccccccccEEEEEEEEccccccEEEEEEEEEccEEEEEcccccccccccccEEEcccEEEEEEcccccccccEEEEEccccEEEEEcccHHHHHHHHHHHHHHHHccccccccccEEEccccc
Coil and Loop (DISEMBL)
MGSLWRAisgqtnqlsdydstefwsnpersgwltkqgEYIKTWRRRWFVLKQgklfwfkestvtraskprgvipvascltvkgaedvLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIvqhsrsvtdseivdydskr
Flexible Loop (DISEMBL)
mgslwraisgqtnqlsdydstefwsnpersgwltkQGEYIKTWRRRWFVLKQgklfwfkestvtraskprgvipvascltvkgaedvLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGrsivqhsrsvtdseivdydskr
Low Complexity Region (SEG)
MGSLWRAISGQTNQLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSEIVDYDSKR
Disordered region (IsUnstruct)
*********************EFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIV******************
Disordered Region (DISOPRED)
*GSLWR*********************ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIG**********************
Disordered Region (DISEMBL)
MGSLWRAISGQTNQLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIV******************
Disordered Region (DISPRO)
*GSLWRAISGQTNQLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSE**D*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSLWRAISGQTNQLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSEIVDYDSKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q9ST43	145	Pleckstrin homology domai	no	no	1.0	0.986	0.710	3e-56
O08967	399	Cytohesin-3 OS=Mus muscul	no	no	0.832	0.298	0.322	3e-12
Q9ULM0	1364	Pleckstrin homology domai	no	no	0.580	0.060	0.413	1e-11
Q8C115	1491	Pleckstrin homology domai	no	no	0.580	0.055	0.456	2e-11
P97694	398	Cytohesin-1 OS=Rattus nor	no	no	0.832	0.298	0.32	3e-11
Q9QX11	398	Cytohesin-1 OS=Mus muscul	yes	no	0.832	0.298	0.32	3e-11
Q86IV4	458	PH domain-containing prot	yes	no	0.657	0.205	0.387	3e-11
Q559T8	2102	Probable serine/threonine	no	no	0.643	0.043	0.316	4e-11
Q8IVE3	1493	Pleckstrin homology domai	no	no	0.580	0.055	0.445	4e-11
Q76MY7	399	Cytohesin-2 OS=Chlorocebu	N/A	no	0.706	0.253	0.335	5e-11

>sp|Q9ST43|PH1_ARATH Pleckstrin homology domain-containing protein 1 OS=Arabidopsis thaliana GN=PH1 PE=2 SV=2

 Score =  216 bits (551), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 103/145 (71%), Positives = 119/145 (82%), Gaps = 2/145 (1%)

Query: 1   MGSLWRAISGQTNQLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKE 60
           M S+WR  +GQ     DY+  EFWSNPERSGWLTKQG+YIKTWRRRWFVLK+GKL WFK+
Sbjct: 1   MESIWRIATGQDPSREDYEGIEFWSNPERSGWLTKQGDYIKTWRRRWFVLKRGKLLWFKD 60

Query: 61  STVT--RASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWIN 118
                 R S PRGVI V  CLTVKGAEDV+NK +AFELS+ + TM+FIAD+EKEKE+WIN
Sbjct: 61  QAAAGIRGSTPRGVISVGDCLTVKGAEDVVNKPFAFELSSGSYTMFFIADNEKEKEEWIN 120

Query: 119 SIGRSIVQHSRSVTDSEIVDYDSKR 143
           SIGRSIVQHSRSVTDSE++DYD +R
Sbjct: 121 SIGRSIVQHSRSVTDSEVLDYDHRR 145

Binds specifically to phosphatidylinositol 3-phosphate (PtdIns3P), but not to other phosphoinositides.
Arabidopsis thaliana (taxid: 3702)

>sp|O08967|CYH3_MOUSE Cytohesin-3 OS=Mus musculus GN=Cyth3 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 30/149 (20%)

Query: 1   MGSLWRAISGQTNQLSDYDSTEF---WSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFW 57
           + +L+ +I  +  ++ + D  +    + NP+R GWL K G  +KTW+RRWF+L    L++
Sbjct: 236 LRNLYESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYY 295

Query: 58  FKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL-----------STRTE----- 101
           F+ +T     +PRG+IP+ + L+++  ED   K   FEL           + +TE     
Sbjct: 296 FEYTT---DKEPRGIIPLEN-LSIREVEDP-RKPNCFELYNPSHKGQVIKACKTEADGRV 350

Query: 102 -----TMYFI-ADSEKEKEDWINSIGRSI 124
                 +Y I A S +EKE+W+ SI  SI
Sbjct: 351 VEGNHVVYRISAPSPEEKEEWMKSIKASI 379

Promotes guanine-nucleotide exchange on ARF1. Promotes the activation of ARF through replacement of GDP with GTP.

Mus musculus (taxid: 10090)

>sp|Q9ULM0|PKHH1_HUMAN Pleckstrin homology domain-containing family H member 1 OS=Homo sapiens GN=PLEKHH1 PE=2 SV=2

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 9/92 (9%)

Query: 28  ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKE-STVTRASKPRGVIPVAS-CLTVKGAE 85
           E+SG+L K G  +KTW+RRWFVL+QG++ ++K  S V R  KP+G + + S C  V+G  
Sbjct: 580 EKSGYLLKMGSQVKTWKRRWFVLRQGQIMYYKSPSDVIR--KPQGQVDLNSRCQIVRG-- 635

Query: 86  DVLNKQYAFELSTRTETMYFIADSEKEKEDWI 117
                   F+L +  +T Y  ADS    E+WI
Sbjct: 636 ---EGSQTFQLISEKKTYYLTADSPSLLEEWI 664

Homo sapiens (taxid: 9606)

>sp|Q8C115|PKHH2_MOUSE Pleckstrin homology domain-containing family H member 2 OS=Mus musculus GN=Plekhh2 PE=2 SV=3

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 9/92 (9%)

Query: 28  ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFK-ESTVTRASKPRGVIPV-ASCLTVKGAE 85
           E+SG+L K    +KTW+RRWFVLK G+L ++K  S V R  KP+G I + ASC  ++G  
Sbjct: 704 EKSGYLLKMSVRVKTWKRRWFVLKGGELLYYKSPSDVIR--KPQGHIELSASCSILRGD- 760

Query: 86  DVLNKQYAFELSTRTETMYFIADSEKEKEDWI 117
              NKQ   +L+T   T Y  ADS    E+WI
Sbjct: 761 ---NKQ-TVQLATEKHTYYLTADSPNILEEWI 788

Mus musculus (taxid: 10090)

>sp|P97694|CYH1_RAT Cytohesin-1 OS=Rattus norvegicus GN=Cyth1 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 79/150 (52%), Gaps = 31/150 (20%)

Query: 1   MGSLWRAISGQTNQLSDYDSTEF---WSNPERSGWLTKQGE-YIKTWRRRWFVLKQGKLF 56
           + +L+ +I  +  ++ + D  +    + NP+R GWL K G   +KTW+RRWF+L    L+
Sbjct: 232 LRNLYESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLY 291

Query: 57  WFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL-----------STRTE---- 101
           +F+ +T     +PRG+IP+ + L+++  ED   K   FEL           + +TE    
Sbjct: 292 YFEYTT---DKEPRGIIPLEN-LSIREVEDS-KKPNCFELYIPDNKDQVIKACKTEADGR 346

Query: 102 ------TMYFI-ADSEKEKEDWINSIGRSI 124
                 T+Y I A + +EKEDWI  I  +I
Sbjct: 347 VVEGNHTVYRISAPTPEEKEDWIKCIKAAI 376

Promotes guanine-nucleotide exchange on ARF6. Promotes the activation of ARF6 through replacement of GDP with GTP.

Rattus norvegicus (taxid: 10116)

>sp|Q9QX11|CYH1_MOUSE Cytohesin-1 OS=Mus musculus GN=Cyth1 PE=2 SV=2

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 79/150 (52%), Gaps = 31/150 (20%)

Query: 1   MGSLWRAISGQTNQLSDYDSTEF---WSNPERSGWLTKQGE-YIKTWRRRWFVLKQGKLF 56
           + +L+ +I  +  ++ + D  +    + NP+R GWL K G   +KTW+RRWF+L    L+
Sbjct: 232 LRNLYESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGGRVKTWKRRWFILTDNCLY 291

Query: 57  WFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL-----------STRTE---- 101
           +F+ +T     +PRG+IP+ + L+++  ED   K   FEL           + +TE    
Sbjct: 292 YFEYTT---DKEPRGIIPLEN-LSIREVEDS-KKPNCFELYIPDNKDQVIKACKTEADGR 346

Query: 102 ------TMYFI-ADSEKEKEDWINSIGRSI 124
                 T+Y I A + +EKEDWI  I  +I
Sbjct: 347 VVEGNHTVYRISAPTPEEKEDWIKCIKAAI 376

Promotes guanine-nucleotide exchange on ARF1 and ARF5. Promotes the activation of ARF through replacement of GDP with GTP.

Mus musculus (taxid: 10090)

>sp|Q86IV4|Y4775_DICDI PH domain-containing protein DDB_G0274775 OS=Dictyostelium discoideum GN=DDB_G0274775 PE=4 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 4/98 (4%)

Query: 28  ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPV-ASCLTVKGAED 86
           +R GWLTKQG  I+TWRRRWFVLK  KLF+FK      A+   G+I +  +    +  + 
Sbjct: 17  DREGWLTKQGGSIRTWRRRWFVLKGKKLFYFKSKGDIEAT---GLIELEQNSFVKEEKDK 73

Query: 87  VLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSI 124
              K+Y F + T     Y  A++E + + W+ SI R++
Sbjct: 74  DKKKKYMFTVGTSKRVFYIFAETETDMKQWMESIKRNL 111

Dictyostelium discoideum (taxid: 44689)

>sp|Q559T8|Y0701_DICDI Probable serine/threonine-protein kinase DDB_G0272282 OS=Dictyostelium discoideum GN=DDB_G0272282 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 60/101 (59%), Gaps = 9/101 (8%)

Query: 24  WSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKG 83
            +NP++SG+L K+G  I++W++R+FVLK G +++FK  +     +P G+IPV      + 
Sbjct: 122 LNNPDKSGYLIKEGHVIRSWKKRYFVLKDGLIYYFKHQS---DQEPTGMIPVIGSQIKRI 178

Query: 84  AEDVLNKQYAFELSTRTETMY----FIADSEKEKEDWINSI 120
            E    ++++F++  + ET +      A  E++  DWI +I
Sbjct: 179 GE--TERKFSFQIIPKNETFFPTFSIQARDEQDCNDWIKAI 217

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8IVE3|PKHH2_HUMAN Pleckstrin homology domain-containing family H member 2 OS=Homo sapiens GN=PLEKHH2 PE=2 SV=2

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 9/92 (9%)

Query: 28  ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFK-ESTVTRASKPRGVIPV-ASCLTVKGAE 85
           E+SG+L K    +K+W+RRWFVLK G+L ++K  S V R  KP+G I + ASC  ++G  
Sbjct: 705 EKSGYLLKMSGKVKSWKRRWFVLKGGELLYYKSPSDVIR--KPQGHIELSASCSILRGD- 761

Query: 86  DVLNKQYAFELSTRTETMYFIADSEKEKEDWI 117
              NKQ   +L+T   T Y  ADS    E+WI
Sbjct: 762 ---NKQ-TVQLTTEKHTYYLTADSPNILEEWI 789

Homo sapiens (taxid: 9606)

>sp|Q76MY7|CYH2_CHLAE Cytohesin-2 OS=Chlorocebus aethiops GN=CYTH2 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 27/128 (21%)

Query: 19  DSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASC 78
           D T  + NP+R GWL K G  +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + 
Sbjct: 252 DLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN- 307

Query: 79  LTVKGAEDVLNKQYAFEL-----------STRTET----------MYFI-ADSEKEKEDW 116
           L+++  +D   K   FEL           + +TE           +Y I A +++EK++W
Sbjct: 308 LSIREVDDP-RKPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRISAPTQEEKDEW 366

Query: 117 INSIGRSI 124
           I SI  ++
Sbjct: 367 IKSIQAAV 374

Acts as a guanine-nucleotide exchange factor (GEF). Promotes guanine-nucleotide exchange on ARF1, ARF3 and ARF6. Promotes the activation of ARF factors through replacement of GDP with GTP. The cell membrane form, in association with ARL4 proteins, recruits ARF6 to the plasma membrane.

Chlorocebus aethiops (taxid: 9534)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
225448379	143	PREDICTED: pleckstrin homology domain-co	1.0	1.0	0.888	1e-68
356501146	148	PREDICTED: pleckstrin homology domain-co	0.986	0.952	0.858	3e-67
351723457	146	uncharacterized protein LOC100527890 [Gl	0.986	0.965	0.836	2e-66
21536721	144	AtPH1-like protein [Arabidopsis thaliana	1.0	0.993	0.847	5e-65
297806587	144	hypothetical protein ARALYDRAFT_487373 [	1.0	0.993	0.847	7e-65
224101119	144	predicted protein [Populus trichocarpa]	1.0	0.993	0.840	1e-64
15239223	144	pleckstrin homology domain-containing pr	1.0	0.993	0.840	2e-64
357492665	144	Pleckstrin homology domain-containing pr	0.993	0.986	0.809	5e-63
224109336	143	predicted protein [Populus trichocarpa]	0.993	0.993	0.818	8e-62
15290005	158	pleckstrin homology (PH) domain-containi	0.993	0.898	0.786	4e-61

>gi|225448379|ref|XP_002269271.1| PREDICTED: pleckstrin homology domain-containing protein 1 [Vitis vinifera]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 127/143 (88%), Positives = 133/143 (93%)

Query: 1   MGSLWRAISGQTNQLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKE 60
           M SLWRA +G  +   DY   EFWSNPER+GWLTKQGEYIKTWRRRWFVLKQGKLFWFKE
Sbjct: 1   MWSLWRAATGTADDSDDYGGVEFWSNPERTGWLTKQGEYIKTWRRRWFVLKQGKLFWFKE 60

Query: 61  STVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSI 120
           ST+TRAS+PRGVIPVASCLTVKGAEDVLNKQ+AFELSTRTETMYFIADSEKEKEDWINSI
Sbjct: 61  STITRASRPRGVIPVASCLTVKGAEDVLNKQFAFELSTRTETMYFIADSEKEKEDWINSI 120

Query: 121 GRSIVQHSRSVTDSEIVDYDSKR 143
           GRSIVQHSRSVTDSEIVDYDSKR
Sbjct: 121 GRSIVQHSRSVTDSEIVDYDSKR 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501146|ref|XP_003519389.1| PREDICTED: pleckstrin homology domain-containing protein 1-like [Glycine max]

 Score =  259 bits (662), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 121/141 (85%), Positives = 131/141 (92%)

Query: 1   MGSLWRAISGQTNQLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKE 60
           M SLWRA +G T   +DYD  EFWSNPER+GWLTKQGEYIKTWRRRWFVLKQGKLFWFKE
Sbjct: 1   MASLWRAATGMTENATDYDGVEFWSNPERTGWLTKQGEYIKTWRRRWFVLKQGKLFWFKE 60

Query: 61  STVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSI 120
           S+VTRAS+PRGV+PVA+CLTVKGAED+LNK  AFELSTR++TMYFIADSEKEKEDWINSI
Sbjct: 61  SSVTRASRPRGVVPVATCLTVKGAEDILNKPNAFELSTRSDTMYFIADSEKEKEDWINSI 120

Query: 121 GRSIVQHSRSVTDSEIVDYDS 141
           GRSIVQHSRSVTDSEIVDYDS
Sbjct: 121 GRSIVQHSRSVTDSEIVDYDS 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723457|ref|NP_001235232.1| uncharacterized protein LOC100527890 [Glycine max] gi|255633474|gb|ACU17095.1| unknown [Glycine max]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 118/141 (83%), Positives = 131/141 (92%)

Query: 1   MGSLWRAISGQTNQLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKE 60
           M SLWRA +G T+  +DYD  EFWSNPER+GWLTKQGEYIKTWRRRWFVLKQGKLFWFK+
Sbjct: 1   MASLWRAATGMTDNATDYDGVEFWSNPERTGWLTKQGEYIKTWRRRWFVLKQGKLFWFKD 60

Query: 61  STVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSI 120
           S VTRAS+PRGV+PVA+CLTVKGAED+LNK  AFELSTR++TMYFIADSEKEKEDWINSI
Sbjct: 61  SAVTRASRPRGVVPVATCLTVKGAEDILNKPNAFELSTRSDTMYFIADSEKEKEDWINSI 120

Query: 121 GRSIVQHSRSVTDSEIVDYDS 141
           GRSIVQHSRSVTDSEI+DYD+
Sbjct: 121 GRSIVQHSRSVTDSEIIDYDN 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536721|gb|AAM61053.1| AtPH1-like protein [Arabidopsis thaliana]

 Score =  251 bits (642), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 122/144 (84%), Positives = 128/144 (88%), Gaps = 1/144 (0%)

Query: 1   MGSLWRA-ISGQTNQLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFK 59
           M SLWRA I GQ N   DY   EFWSNPER+GWLTKQGEYIKTWRRRWFVLKQGKLFWFK
Sbjct: 1   MASLWRAVIGGQNNNSEDYGGVEFWSNPERTGWLTKQGEYIKTWRRRWFVLKQGKLFWFK 60

Query: 60  ESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINS 119
           +S VTR S+PRGV+PVASCLT KGAEDVLNKQ AFELSTR ETMYFIADSEKEKEDWINS
Sbjct: 61  DSDVTRVSRPRGVVPVASCLTAKGAEDVLNKQNAFELSTRNETMYFIADSEKEKEDWINS 120

Query: 120 IGRSIVQHSRSVTDSEIVDYDSKR 143
           IGRSIVQ+SRSVTDSEIVDYD+K 
Sbjct: 121 IGRSIVQNSRSVTDSEIVDYDNKH 144

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806587|ref|XP_002871177.1| hypothetical protein ARALYDRAFT_487373 [Arabidopsis lyrata subsp. lyrata] gi|297317014|gb|EFH47436.1| hypothetical protein ARALYDRAFT_487373 [Arabidopsis lyrata subsp. lyrata]

 Score =  251 bits (641), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 122/144 (84%), Positives = 129/144 (89%), Gaps = 1/144 (0%)

Query: 1   MGSLWRA-ISGQTNQLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFK 59
           M SLWRA I GQ+N   DY   EFWSNPER+GWLTKQGEYIKTWRRRWFVLKQGKLFWFK
Sbjct: 1   MASLWRAVIGGQSNNSDDYGGVEFWSNPERTGWLTKQGEYIKTWRRRWFVLKQGKLFWFK 60

Query: 60  ESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINS 119
           +S VTR S+PRGV+PVASCLT KGAEDVLNKQ AFELSTR ETMYFIADSEKEKEDWINS
Sbjct: 61  DSDVTRVSRPRGVVPVASCLTAKGAEDVLNKQNAFELSTRDETMYFIADSEKEKEDWINS 120

Query: 120 IGRSIVQHSRSVTDSEIVDYDSKR 143
           IGRSIVQ+SRSVTDSEIVDYD+K 
Sbjct: 121 IGRSIVQNSRSVTDSEIVDYDNKH 144

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101119|ref|XP_002312150.1| predicted protein [Populus trichocarpa] gi|222851970|gb|EEE89517.1| predicted protein [Populus trichocarpa]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 121/144 (84%), Positives = 129/144 (89%), Gaps = 1/144 (0%)

Query: 1   MGSLWRAISGQTN-QLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFK 59
           M SLWRA +  T  Q +  D  EFWSNPER+GWL KQGE+IKTWRRRWF+LKQGKLFWFK
Sbjct: 1   MASLWRAATALTQTQSTQTDGVEFWSNPERTGWLMKQGEHIKTWRRRWFILKQGKLFWFK 60

Query: 60  ESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINS 119
           +STVTR  KPRGVIPVASCLTVKGAEDVL+KQYAFELSTR +TMYFIADSEKEKEDWINS
Sbjct: 61  DSTVTRVCKPRGVIPVASCLTVKGAEDVLHKQYAFELSTRNDTMYFIADSEKEKEDWINS 120

Query: 120 IGRSIVQHSRSVTDSEIVDYDSKR 143
           IGRSIVQHSRSVTDSEIVDYDSKR
Sbjct: 121 IGRSIVQHSRSVTDSEIVDYDSKR 144

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239223|ref|NP_196190.1| pleckstrin homology domain-containing protein [Arabidopsis thaliana] gi|9759096|dbj|BAB09665.1| AtPH1-like protein [Arabidopsis thaliana] gi|98960875|gb|ABF58921.1| At5g05710 [Arabidopsis thaliana] gi|110737775|dbj|BAF00826.1| AtPH1-like protein [Arabidopsis thaliana] gi|332003530|gb|AED90913.1| pleckstrin homology domain-containing protein [Arabidopsis thaliana]

 Score =  249 bits (636), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 121/144 (84%), Positives = 127/144 (88%), Gaps = 1/144 (0%)

Query: 1   MGSLWRA-ISGQTNQLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFK 59
           M SLWRA I GQ N   DY   EFWSNPER+GWLTKQGEYIKTWRRRWFVLKQGKLFWFK
Sbjct: 1   MASLWRAVIGGQNNNSEDYGGVEFWSNPERTGWLTKQGEYIKTWRRRWFVLKQGKLFWFK 60

Query: 60  ESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINS 119
           +S VTR S+PRGV+PV SCLT KGAEDVLNKQ AFELSTR ETMYFIADSEKEKEDWINS
Sbjct: 61  DSDVTRVSRPRGVVPVESCLTAKGAEDVLNKQNAFELSTRNETMYFIADSEKEKEDWINS 120

Query: 120 IGRSIVQHSRSVTDSEIVDYDSKR 143
           IGRSIVQ+SRSVTDSEIVDYD+K 
Sbjct: 121 IGRSIVQNSRSVTDSEIVDYDNKH 144

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492665|ref|XP_003616621.1| Pleckstrin homology domain-containing protein [Medicago truncatula] gi|355517956|gb|AES99579.1| Pleckstrin homology domain-containing protein [Medicago truncatula] gi|388509562|gb|AFK42847.1| unknown [Medicago truncatula]

 Score =  245 bits (625), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 115/142 (80%), Positives = 126/142 (88%)

Query: 2   GSLWRAISGQTNQLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKES 61
            SLWR  +G T    DY   EFWSNPER+GWLTKQGEYIKTWRRRWFVLKQGKLFWFKES
Sbjct: 3   ASLWRYATGSTTNPVDYSGVEFWSNPERTGWLTKQGEYIKTWRRRWFVLKQGKLFWFKES 62

Query: 62  TVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIG 121
           T+TRAS PRGVIPVA+CLTVKGAED+L+K YAFELSTR +TMYFIADS+KEKEDWINSIG
Sbjct: 63  TITRASIPRGVIPVATCLTVKGAEDILHKPYAFELSTRADTMYFIADSDKEKEDWINSIG 122

Query: 122 RSIVQHSRSVTDSEIVDYDSKR 143
           RSIV HSRSVTDSEI+DYD+ +
Sbjct: 123 RSIVLHSRSVTDSEIIDYDNGK 144

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109336|ref|XP_002315163.1| predicted protein [Populus trichocarpa] gi|222864203|gb|EEF01334.1| predicted protein [Populus trichocarpa]

 Score =  241 bits (615), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 117/143 (81%), Positives = 126/143 (88%), Gaps = 1/143 (0%)

Query: 1   MGSLWRAISGQTN-QLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFK 59
           M SLWRA +  T  Q +  D  EFWS+PER+GWL KQGE+IKTWRRRWFVLKQGKLFWFK
Sbjct: 1   MVSLWRAATALTQTQSTQTDGVEFWSSPERTGWLMKQGEHIKTWRRRWFVLKQGKLFWFK 60

Query: 60  ESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINS 119
           +STVTR SKPRG IPVASCLTVKGAEDVL++QYAFE STR +TMYFIADSEKEKEDWINS
Sbjct: 61  DSTVTRVSKPRGAIPVASCLTVKGAEDVLHRQYAFEFSTRNDTMYFIADSEKEKEDWINS 120

Query: 120 IGRSIVQHSRSVTDSEIVDYDSK 142
           IGRSIVQHSRSVTDSEIVDYD K
Sbjct: 121 IGRSIVQHSRSVTDSEIVDYDGK 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15290005|dbj|BAB63699.1| pleckstrin homology (PH) domain-containing protein-like [Oryza sativa Japonica Group] gi|56785356|dbj|BAD82314.1| pleckstrin homology (PH) domain-containing protein-like [Oryza sativa Japonica Group] gi|215704154|dbj|BAG92994.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  238 bits (608), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 114/145 (78%), Positives = 127/145 (87%), Gaps = 3/145 (2%)

Query: 2   GSLWRAISGQTNQLSDYDST---EFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWF 58
            SLWRA+ G     +D D+T   EFW +PER+GWLTKQGEYIKTWRRRWFVLKQG+LFWF
Sbjct: 3   ASLWRAVMGAGASSADTDTTGGVEFWRSPERAGWLTKQGEYIKTWRRRWFVLKQGRLFWF 62

Query: 59  KESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWIN 118
           K+S VTRAS PRGVIPVA+CLTVKGAED LN+Q+AFELST  ETMYFIADSEKEKE+WIN
Sbjct: 63  KDSGVTRASVPRGVIPVATCLTVKGAEDTLNRQFAFELSTPAETMYFIADSEKEKEEWIN 122

Query: 119 SIGRSIVQHSRSVTDSEIVDYDSKR 143
           SIGRSIVQHSRSVTD+E+VDYDS R
Sbjct: 123 SIGRSIVQHSRSVTDAEVVDYDSGR 147

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
TAIR|locus:2166349	144	AT5G05710 [Arabidopsis thalian	0.993	0.986	0.846	3.3e-63
TAIR|locus:2060625	145	PH1 "pleckstrin homologue 1" [	1.0	0.986	0.710	1.6e-54
UNIPROTKB|B7Z2V9	314	CYTH3 "cDNA FLJ56345, highly s	0.510	0.232	0.423	6.4e-15
ZFIN|ZDB-GENE-030131-4311	399	cyth1b "cytohesin 1b" [Danio r	0.510	0.182	0.423	6.9e-15
UNIPROTKB|F1P496	386	CYTH3 "Uncharacterized protein	0.510	0.189	0.423	2e-14
DICTYBASE|DDB_G0274775	458	phdI "pleckstrin homology (PH)	0.657	0.205	0.418	2e-14
UNIPROTKB|F1P7S0	388	CYTH3 "Uncharacterized protein	0.510	0.188	0.423	2e-14
MGI|MGI:1335107	399	Cyth3 "cytohesin 3" [Mus muscu	0.510	0.182	0.423	2.3e-14
UNIPROTKB|F1MCV3	401	CYTH1 "Uncharacterized protein	0.510	0.182	0.412	3.9e-14
UNIPROTKB|J9PA23	467	CYTH3 "Uncharacterized protein	0.510	0.156	0.423	1.1e-13

TAIR|locus:2166349 AT5G05710 [Arabidopsis thaliana (taxid:3702)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 121/143 (84%), Positives = 127/143 (88%)

Query:     1 MGSLWRA-ISGQTNQLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFK 59
             M SLWRA I GQ N   DY   EFWSNPER+GWLTKQGEYIKTWRRRWFVLKQGKLFWFK
Sbjct:     1 MASLWRAVIGGQNNNSEDYGGVEFWSNPERTGWLTKQGEYIKTWRRRWFVLKQGKLFWFK 60

Query:    60 ESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINS 119
             +S VTR S+PRGV+PV SCLT KGAEDVLNKQ AFELSTR ETMYFIADSEKEKEDWINS
Sbjct:    61 DSDVTRVSRPRGVVPVESCLTAKGAEDVLNKQNAFELSTRNETMYFIADSEKEKEDWINS 120

Query:   120 IGRSIVQHSRSVTDSEIVDYDSK 142
             IGRSIVQ+SRSVTDSEIVDYD+K
Sbjct:   121 IGRSIVQNSRSVTDSEIVDYDNK 143

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2060625 PH1 "pleckstrin homologue 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 103/145 (71%), Positives = 119/145 (82%)

Query:     1 MGSLWRAISGQTNQLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKE 60
             M S+WR  +GQ     DY+  EFWSNPERSGWLTKQG+YIKTWRRRWFVLK+GKL WFK+
Sbjct:     1 MESIWRIATGQDPSREDYEGIEFWSNPERSGWLTKQGDYIKTWRRRWFVLKRGKLLWFKD 60

Query:    61 STVT--RASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWIN 118
                   R S PRGVI V  CLTVKGAEDV+NK +AFELS+ + TM+FIAD+EKEKE+WIN
Sbjct:    61 QAAAGIRGSTPRGVISVGDCLTVKGAEDVVNKPFAFELSSGSYTMFFIADNEKEKEEWIN 120

Query:   119 SIGRSIVQHSRSVTDSEIVDYDSKR 143
             SIGRSIVQHSRSVTDSE++DYD +R
Sbjct:   121 SIGRSIVQHSRSVTDSEVLDYDHRR 145

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=ISS

GO:0035091 "phosphatidylinositol binding" evidence=ISS

UNIPROTKB|B7Z2V9 CYTH3 "cDNA FLJ56345, highly similar to Cytohesin-3" [Homo sapiens (taxid:9606)]

 Score = 162 (62.1 bits), Expect = 6.4e-15, Sum P(2) = 6.4e-15
 Identities = 33/78 (42%), Positives = 49/78 (62%)

Query:    19 DSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASC 78
             D T  + NP+R GWL K G  +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + 
Sbjct:   172 DLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN- 227

Query:    79 LTVKGAEDVLNKQYAFEL 96
             L+++  ED   K   FEL
Sbjct:   228 LSIREVEDP-RKPNCFEL 244

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

ZFIN|ZDB-GENE-030131-4311 cyth1b "cytohesin 1b" [Danio rerio (taxid:7955)]

 Score = 162 (62.1 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
 Identities = 33/78 (42%), Positives = 49/78 (62%)

Query:    19 DSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASC 78
             D T  + NP+R GWL K G  +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + 
Sbjct:   255 DLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN- 310

Query:    79 LTVKGAEDVLNKQYAFEL 96
             L+++  ED   K   FEL
Sbjct:   311 LSIREVEDS-KKPNCFEL 327

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

UNIPROTKB|F1P496 CYTH3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 162 (62.1 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
 Identities = 33/78 (42%), Positives = 49/78 (62%)

Query:    19 DSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASC 78
             D T  + NP+R GWL K G  +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + 
Sbjct:   244 DLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN- 299

Query:    79 LTVKGAEDVLNKQYAFEL 96
             L+++  ED   K   FEL
Sbjct:   300 LSIREVEDP-RKPNCFEL 316

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

DICTYBASE|DDB_G0274775 phdI "pleckstrin homology (PH) domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 192 (72.6 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 41/98 (41%), Positives = 57/98 (58%)

Query:    28 ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDV 87
             +R GWLTKQG  I+TWRRRWFVLK  KLF+FK      A+   G+I +     VK  +D 
Sbjct:    17 DREGWLTKQGGSIRTWRRRWFVLKGKKLFYFKSKGDIEAT---GLIELEQNSFVKEEKDK 73

Query:    88 -LNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSI 124
                K+Y F + T     Y  A++E + + W+ SI R++
Sbjct:    74 DKKKKYMFTVGTSKRVFYIFAETETDMKQWMESIKRNL 111

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1P7S0 CYTH3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 162 (62.1 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
 Identities = 33/78 (42%), Positives = 49/78 (62%)

Query:    19 DSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASC 78
             D T  + NP+R GWL K G  +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + 
Sbjct:   246 DLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN- 301

Query:    79 LTVKGAEDVLNKQYAFEL 96
             L+++  ED   K   FEL
Sbjct:   302 LSIREVEDP-RKPNCFEL 318

GO:0090162 "establishment of epithelial cell polarity" evidence=IEA

GO:0045785 "positive regulation of cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

MGI|MGI:1335107 Cyth3 "cytohesin 3" [Mus musculus (taxid:10090)]

 Score = 162 (62.1 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
 Identities = 33/78 (42%), Positives = 49/78 (62%)

Query:    19 DSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASC 78
             D T  + NP+R GWL K G  +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + 
Sbjct:   257 DLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN- 312

Query:    79 LTVKGAEDVLNKQYAFEL 96
             L+++  ED   K   FEL
Sbjct:   313 LSIREVEDP-RKPNCFEL 329

GO:0001726 "ruffle" evidence=IPI

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0045785 "positive regulation of cell adhesion" evidence=IDA

GO:0050790 "regulation of catalytic activity" evidence=ISS

GO:0090162 "establishment of epithelial cell polarity" evidence=IMP

UNIPROTKB|F1MCV3 CYTH1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 159 (61.0 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
 Identities = 33/80 (41%), Positives = 51/80 (63%)

Query:    19 DSTEFWSNPERSGWLTK--QGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVA 76
             D T  + NP+R GWL K   G  +KTW+RRWF+L    L++F+ +T     +PRG+IP+ 
Sbjct:   255 DLTHTFFNPDREGWLLKLVSGR-VKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLE 310

Query:    77 SCLTVKGAEDVLNKQYAFEL 96
             + L+++  ED  N++  FEL
Sbjct:   311 N-LSIREVEDSKNQKNCFEL 329

GO:0090162 "establishment of epithelial cell polarity" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|J9PA23 CYTH3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 162 (62.1 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
 Identities = 33/78 (42%), Positives = 49/78 (62%)

Query:    19 DSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASC 78
             D T  + NP+R GWL K G  +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + 
Sbjct:   217 DLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN- 272

Query:    79 LTVKGAEDVLNKQYAFEL 96
             L+++  ED   K   FEL
Sbjct:   273 LSIREVEDP-RKPNCFEL 289

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ST43	PH1_ARATH	No assigned EC number	0.7103	1.0	0.9862	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029262001 SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (143 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	143
cd13276	117	cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin	2e-58
cd01252	118	cd01252, PH_GRP1-like, General Receptor for Phosph	5e-22
cd13282	96	cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology	2e-20
cd13248	104	cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate	3e-20
smart00233	102	smart00233, PH, Pleckstrin homology domain	9e-20
pfam00169	101	pfam00169, PH, PH domain	4e-18
cd10573	96	cd10573, PH_DAPP1, Dual Adaptor for Phosphotyrosin	4e-17
cd13301	108	cd13301, PH1_Pleckstrin_2, Pleckstrin 2 Pleckstrin	2e-16
cd00821	92	cd00821, PH, Pleckstrin homology (PH) domain	3e-16
cd13271	114	cd13271, PH2_TAPP1_2, Tandem PH-domain-containing	4e-16
cd13308	113	cd13308, PH_3BP2, SH3 domain-binding protein 2 Ple	2e-15
cd13288	120	cd13288, PH_Ses, Sesquipedalian family Pleckstrin	4e-14
cd13255	110	cd13255, PH_TAAP2-like, Tandem PH-domain-containin	5e-14
cd13281	139	cd13281, PH_PLEKHD1, Pleckstrin homology (PH) doma	2e-13
cd13298	106	cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin	3e-13
cd13263	114	cd13263, PH_RhoGap25-like, Rho GTPase activating p	4e-13
cd13296	111	cd13296, PH2_MyoX, Myosin X Pleckstrin homology (P	3e-12
cd13379	114	cd13379, PH_RhoGap24, Rho GTPase activating protei	1e-11
cd13275	103	cd13275, PH_M-RIP, Myosin phosphatase-RhoA Interac	2e-11
cd01241	121	cd01241, PH_PKB, Protein Kinase B-like pleckstrin	3e-11
cd13250	98	cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin	6e-11
cd01257	106	cd01257, PH_IRS, Insulin receptor substrate (IRS)	7e-11
cd01235	106	cd01235, PH_Sbf1_hMTMR5, Set binding factor 1 (als	3e-10
cd13215	130	cd13215, PH-GRAM1_AGT26, Autophagy-related protein	9e-10
cd13273	110	cd13273, PH_SWAP-70, Switch-associated protein-70	1e-09
cd13316	95	cd13316, PH_Boi, Boi family Pleckstrin homology do	1e-09
cd13324	103	cd13324, PH_Gab-like, Grb2-associated binding prot	1e-09
cd13378	116	cd13378, PH_RhoGAP2, Rho GTPase activating protein	2e-09
cd13384	115	cd13384, PH_Gab2_2, Grb2-associated binding protei	2e-09
cd01251	105	cd01251, PH2_ADAP, ArfGAP with dual PH domains Ple	4e-09
cd13385	125	cd13385, PH_Gab3, Grb2-associated binding protein	6e-09
cd01260	114	cd01260, PH_CNK_mammalian-like, Connector enhancer	7e-09
cd13284	99	cd13284, PH_OSBP_ORP4, Human Oxysterol binding pro	2e-08
cd13326	90	cd13326, PH_CNK_insect-like, Connector enhancer of	2e-08
cd01233	111	cd01233, PH_KIFIA_KIFIB, KIFIA and KIFIB protein p	2e-08
cd01238	140	cd01238, PH_Btk, Bruton's tyrosine kinase pleckstr	3e-08
cd01266	123	cd01266, PH_Gab1_Gab2, Grb2-associated binding pro	8e-08
cd13302	109	cd13302, PH2_Pleckstrin_2, Pleckstrin 2 Pleckstrin	1e-07
cd13253	93	cd13253, PH1_ARAP, ArfGAP with RhoGAP domain, anky	2e-07
cd13260	103	cd13260, PH_RASA1, RAS p21 protein activator (GTPa	2e-07
cd13278	139	cd13278, PH_Bud4, Bud4 Pleckstrin homology (PH) do	3e-07
cd13261	136	cd13261, PH_RasGRF1_2, Ras-specific guanine nucleo	7e-07
cd13267	125	cd13267, PH_DOCK-D, Dedicator of cytokinesis-D sub	8e-07
cd13293	88	cd13293, PH_CpORP2-like, Cryptosporidium-like Oxys	9e-07
cd13292	103	cd13292, PH_Osh1p_Osh2p_yeast, Yeast oxysterol bin	4e-06
cd13291	107	cd13291, PH_ORP10_ORP11, Human Oxysterol binding p	1e-05
cd13274	97	cd13274, PH_DGK_type2, Type 2 Diacylglycerol kinas	2e-05
cd13297	123	cd13297, PH3_MyoX-like, Myosin X-like Pleckstrin h	2e-05
cd13299	102	cd13299, PH2_PH_fungal, Fungal proteins Pleckstrin	2e-05
cd01254	134	cd01254, PH_PLD, Phospholipase D pleckstrin homolo	3e-05
cd13283	100	cd13283, PH_GPBP, Goodpasture antigen binding prot	3e-05
cd13251	108	cd13251, PH_ASAP, ArfGAP with SH3 domain, ankyrin	7e-05
cd13234	105	cd13234, PHsplit_PLC_gamma, Phospholipase C-gamma	7e-05
cd13265	108	cd13265, PH_evt, Evectin Pleckstrin homology (PH)	1e-04
cd13272	116	cd13272, PH_INPP4A_INPP4B, Type I inositol 3,4-bis	2e-04
cd01265	101	cd01265, PH_TBC1D2A, TBC1 domain family member 2A	2e-04
cd13294	100	cd13294, PH_ORP_plant, Plant Oxysterol binding pro	8e-04
cd13252	125	cd13252, PH1_ADAP, ArfGAP with dual PH domains Ple	9e-04
cd01263	119	cd01263, PH_anillin, Anillin Pleckstrin homology (	0.001
cd13258	144	cd13258, PH_PLEKHJ1, Pleckstrin homology domain co	0.002
cd13237	90	cd13237, PH2_FGD5_FGD6, FYVE, RhoGEF and PH domain	0.002
cd13233	110	cd13233, PH_ARHGAP9-like, Beta-spectrin pleckstrin	0.002
cd01236	136	cd01236, PH_RIP, Rho-Interacting Protein Pleckstri	0.002
cd13290	102	cd13290, PH_ORP9, Human Oxysterol binding protein	0.003

>gnl|CDD|241430 cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin homolog (PH) 1 (AtPH1) PH domain

 Score =  176 bits (448), Expect = 2e-58
 Identities = 76/118 (64%), Positives = 95/118 (80%), Gaps = 3/118 (2%)

Query: 22  EFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTV 81
           EFWS+PE++GWLTKQG  IKTWRRRWFVLKQGKLF+FK+      S+PRGVI ++ CLTV
Sbjct: 2   EFWSDPEKAGWLTKQGGSIKTWRRRWFVLKQGKLFYFKDEDPD--SEPRGVIDLSDCLTV 59

Query: 82  KGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRS-VTDSEIVD 138
           K AE+  NK++AFE+ST   T Y IADSEKEKE+WI++IGR+IV+ SRS  T  E++D
Sbjct: 60  KSAEEATNKEFAFEVSTPERTFYLIADSEKEKEEWISAIGRAIVKLSRSKGTIDEVLD 117

AtPH1 is expressed in all plant tissue and is proposed to be the plant homolog of human pleckstrin. Pleckstrin consists of two PH domains separated by a linker region, while AtPH has a single PH domain with a short N-terminal extension. AtPH1 binds PtdIns3P specifically and is thought to be an adaptor molecule since it has no obvious catalytic functions. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|241283 cd01252, PH_GRP1-like, General Receptor for Phosphoinositides-1-like Pleckstrin homology (PH) domain

 Score = 84.3 bits (209), Expect = 5e-22
 Identities = 44/119 (36%), Positives = 65/119 (54%), Gaps = 25/119 (21%)

Query: 26  NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE 85
           NP+R GWL K G  +K+W+RRWF+L    L++F+ +T     +PRG+IP+ + L+V+  E
Sbjct: 2   NPDREGWLLKLGGRVKSWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN-LSVREVE 57

Query: 86  DVLNKQYAFEL-STRTETM------------------YFI-ADSEKEKEDWINSIGRSI 124
           D   K + FEL S   E +                  Y I A +E+E ++WI SI  SI
Sbjct: 58  D-SKKPFCFELYSPSNEVIKACKTDSDGKVVEGNHTVYRISAATEEEMDEWIKSIKASI 115

GRP1/cytohesin3 and the related proteins ARNO (ARF nucleotide-binding site opener)/cytohesin-2 and cytohesin-1 are ARF exchange factors that contain a pleckstrin homology (PH) domain thought to target these proteins to cell membranes through binding polyphosphoinositides. The PH domains of all three proteins exhibit relatively high affinity for PtdIns(3,4,5)P3. Within the Grp1 family, diglycine (2G) and triglycine (3G) splice variants, differing only in the number of glycine residues in the PH domain, strongly influence the affinity and specificity for phosphoinositides. The 2G variants selectively bind PtdIns(3,4,5)P3 with high affinity,the 3G variants bind PtdIns(3,4,5)P3 with about 30-fold lower affinity and require the polybasic region for plasma membrane targeting. These ARF-GEFs share a common, tripartite structure consisting of an N-terminal coiled-coil domain, a central domain with homology to the yeast protein Sec7, a PH domain, and a C-terminal polybasic region. The Sec7 domain is autoinhibited by conserved elements proximal to the PH domain. GRP1 binds to the DNA binding domain of certain nuclear receptors (TRalpha, TRbeta, AR, ER, but not RXR), and can repress thyroid hormone receptor (TR)-mediated transactivation by decreasing TR-complex formation on thyroid hormone response elements. ARNO promotes sequential activation of Arf6, Cdc42 and Rac1 and insulin secretion. Cytohesin acts as a PI 3-kinase effector mediating biological responses including cell spreading and adhesion, chemotaxis, protein trafficking, and cytoskeletal rearrangements, only some of which appear to depend on their ability to activate ARFs. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 118

>gnl|CDD|241436 cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology (PH) domain containing, family H (with MyTH4 domain) members 1 and 2 (PLEKHH1) PH domain, repeat 1

 Score = 79.3 bits (196), Expect = 2e-20
 Identities = 39/94 (41%), Positives = 55/94 (58%), Gaps = 9/94 (9%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFK-ESTVTRASKPRGVIPV-ASCLTVKGAED 86
           ++G+LTK G  +KTW+RRWFVLK G+LF++K  + V R  KP+G I +  SC   +    
Sbjct: 1   KAGYLTKLGGKVKTWKRRWFVLKNGELFYYKSPNDVIR--KPQGQIALDGSCEIARAEGA 58

Query: 87  VLNKQYAFELSTRTETMYFIADSEKEKEDWINSI 120
                  FE+ T   T Y  ADSE + ++WI  I
Sbjct: 59  -----QTFEIVTEKRTYYLTADSENDLDEWIRVI 87

PLEKHH1 and PLEKHH2 (also called PLEKHH1L) are thought to function in phospholipid binding and signal transduction. There are 3 Human PLEKHH genes: PLEKHH1, PLEKHH2, and PLEKHH3. There are many isoforms, the longest of which contain a FERM domain, a MyTH4 domain, two PH domains, a peroximal domain, a vacuolar domain, and a coiled coil stretch. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|241402 cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate binding proteins 1, 2, and 3 pleckstrin homology (PH) domain

 Score = 79.2 bits (196), Expect = 3e-20
 Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 6/100 (6%)

Query: 25  SNPERSGWLTKQGEY-IKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVAS-CLTVK 82
           +    SGWL KQG   +K W++RWFVLK   L+++K+       K  G I + S  ++  
Sbjct: 5   APVVFSGWLHKQGGSGLKNWKKRWFVLKDNCLYYYKDP---EEEKALGSILLPSYTISPA 61

Query: 83  GAEDVLNKQYAFELSTR-TETMYFIADSEKEKEDWINSIG 121
              D +N+++AF+       T YF AD+++E E W+ ++ 
Sbjct: 62  SPSDEINRKFAFKAEHAGMRTYYFAADTQEEMEQWMKALS 101

PEPP1 (also called PLEKHA4/PH domain-containing family A member 4 and RHOXF1/Rhox homeobox family member 1), and related homologs PEPP2 (also called PLEKHA5/PH domain-containing family A member 5) and PEPP3 (also called PLEKHA6/PH domain-containing family A member 6), have PH domains that interact specifically with PtdIns(3,4)P3. Other proteins that bind PtdIns(3,4)P3 specifically are: TAPP1 (tandem PH-domain-containing protein-1) and TAPP2], PtdIns3P AtPH1, and Ptd- Ins(3,5)P2 (centaurin-beta2). All of these proteins contain at least 5 of the 6 conserved amino acids that make up the putative phosphatidylinositol 3,4,5- trisphosphate-binding motif (PPBM) located at their N-terminus. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 104

>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain

 Score = 78.0 bits (192), Expect = 9e-20
 Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 27  PERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASC-LTVKGA 84
             + GWL K+     K+W++R+FVL    L ++K     ++ KP+G I ++ C +     
Sbjct: 1   VIKEGWLYKKSGGGKKSWKKRYFVLFNSTLLYYKSKKDKKSYKPKGSIDLSGCTVREAPD 60

Query: 85  EDVLNKQYAFELSTRT-ETMYFIADSEKEKEDWINSIGRSI 124
            D   K + FE+ T   +T+   A+SE+E+E W+ ++ ++I
Sbjct: 61  PDSSKKPHCFEIKTSDRKTLLLQAESEEEREKWVEALRKAI 101

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. Length = 102

>gnl|CDD|215766 pfam00169, PH, PH domain

 Score = 73.7 bits (181), Expect = 4e-18
 Identities = 34/101 (33%), Positives = 61/101 (60%), Gaps = 4/101 (3%)

Query: 27  PERSGWLTKQG-EYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASC-LTVKGA 84
             + GWL K+G    K+W++R+FVL  G L ++K+S  +  S+P+G IP++ C +T    
Sbjct: 1   VIKEGWLLKKGSGGRKSWKKRYFVLFDGVLLYYKDSKKSS-SRPKGSIPLSGCQVTKVPD 59

Query: 85  EDVLNKQYAFELSTRT-ETMYFIADSEKEKEDWINSIGRSI 124
            +   ++  FE+ T   ET    A+SE+E+++W+ +I  +I
Sbjct: 60  SEDGKRKNCFEIRTGDRETFLLQAESEEERKEWVKAIRSAI 100

PH stands for pleckstrin homology. Length = 101

>gnl|CDD|241309 cd10573, PH_DAPP1, Dual Adaptor for Phosphotyrosine and 3-Phosphoinositides Pleckstrin homology (PH) domain

 Score = 71.2 bits (175), Expect = 4e-17
 Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL 88
           + G+LTKQG  +K W+ RWFVL++ +L +FK  T    +KP   + +  C +V  A+   
Sbjct: 5   KEGYLTKQGGIVKNWKTRWFVLRKNELKYFKTRT---DTKPIRTLDLTECSSV-QADYSQ 60

Query: 89  NKQYAFELSTRTETMYFIADSEKEKEDWINSI 120
            K   F L     T Y  A +E+E ++W+  +
Sbjct: 61  GKPNCFRLVFPDRTFYMYAKTEEEADEWVKLL 92

DAPP1 (also known as PHISH/3' phosphoinositide-interacting SH2 domain-containing protein or Bam32) plays a role in B-cell activation and has potential roles in T-cell and mast cell function. DAPP1 promotes B cell receptor (BCR) induced activation of Rho GTPases Rac1 and Cdc42, which feed into mitogen-activated protein kinases (MAPK) activation pathways and affect cytoskeletal rearrangement. DAPP1can also regulate BCR-induced activation of extracellular signal-regulated kinase (ERK), and c-jun NH2-terminal kinase (JNK). DAPP1 contains an N-terminal SH2 domain and a C-terminal pleckstrin homology (PH) domain with a single tyrosine phosphorylation site located centrally. DAPP1 binds strongly to both PtdIns(3,4,5)P3 and PtdIns(3,4)P2. The PH domain is essential for plasma membrane recruitment of PI3K upon cell activation. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|241455 cd13301, PH1_Pleckstrin_2, Pleckstrin 2 Pleckstrin homology (PH) domain, repeat 1

 Score = 69.7 bits (171), Expect = 2e-16
 Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 4/98 (4%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL 88
           + G+L K+G  +  W+ RWFVL + KL ++K+ T    S P+G+I +  C       +  
Sbjct: 5   KEGFLVKKGHVVNNWKARWFVLLEDKLEYYKKKTD---SSPKGMILLKGCTITSPCLEYE 61

Query: 89  NKQYAFELSTRTETMYFI-ADSEKEKEDWINSIGRSIV 125
            +   F+L+T     +F+ A S +E++ W   I ++I 
Sbjct: 62  KRPLVFKLTTAKGQDHFLQACSREERDAWAKDITKAIT 99

Pleckstrin is a protein found in platelets. This name is derived from platelet and leukocyte C kinase substrate and the KSTR string of amino acids. Pleckstrin 2 contains two PH domains and a DEP (dishvelled, egl-10, and pleckstrin) domain. Unlike pleckstrin 1, pleckstrin 2 does not contain obvious sites of PKC phosphorylation. Pleckstrin 2 plays a role in actin rearrangement, large lamellipodia and peripheral ruffle formation, and may help orchestrate cytoskeletal arrangement. The PH domains of pleckstrin 2 are thought to contribute to lamellipodia formation. This cd contains the first PH domain repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 108

>gnl|CDD|241231 cd00821, PH, Pleckstrin homology (PH) domain

 Score = 68.5 bits (167), Expect = 3e-16
 Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 5/94 (5%)

Query: 29  RSGWLTKQGEY-IKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDV 87
           + GWL K+G   +K+W++RWFVL    L ++K      + KP+G+IP++  L V+     
Sbjct: 1   KEGWLKKRGGKGLKSWKKRWFVLFDDVLLYYKSKK-DSSKKPKGLIPLSDGLEVELVSS- 58

Query: 88  LNKQYAFELSTRT--ETMYFIADSEKEKEDWINS 119
             K   FEL T     T Y  A+SE+E+E+W+ +
Sbjct: 59  SGKPNCFELVTPDRGRTYYLQAESEEEREEWLEA 92

PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 92

>gnl|CDD|241425 cd13271, PH2_TAPP1_2, Tandem PH-domain-containing proteins 1 and 2 Pleckstrin homology (PH) domain, C-terminal repeat

 Score = 68.9 bits (169), Expect = 4e-16
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 5/109 (4%)

Query: 25  SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA 84
            N  +SG+  KQG   K W+RR+F+L    + ++K  T     +    IP+   L V   
Sbjct: 6   RNVIKSGYCVKQGAVRKNWKRRYFILDDNTISYYKSETDKEPLR---TIPLKEVLKVHEC 62

Query: 85  E--DVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSV 131
              D+L +   FE+ T + T Y  ADS ++   WI +I  +IV      
Sbjct: 63  LSGDLLMRDNLFEIITTSRTFYIQADSPEDMHSWIKAISGAIVARRGPY 111

The binding of TAPP1 (also called PLEKHA1/pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1) and TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP1 and TAPP2 contain two sequential PH domains in which the C-terminal PH domain specifically binds PtdIns(3,4)P2 with high affinity. The N-terminal PH domain does not interact with any phosphoinositide tested. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241462 cd13308, PH_3BP2, SH3 domain-binding protein 2 Pleckstrin homology (PH) domain

 Score = 67.0 bits (164), Expect = 2e-15
 Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 9/106 (8%)

Query: 29  RSGWLTKQGEYIKT---WRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE 85
            SG+LTK+G   K    W  R+ ++ +G +++FK S    ++KP+GV  +         E
Sbjct: 11  HSGYLTKKGGSQKQLLKWPLRYVIIHKGCVYYFKNSQ---SAKPKGVFSLNGYNRRAAEE 67

Query: 86  DVLNKQYAFEL---STRTETMYFIADSEKEKEDWINSIGRSIVQHS 128
               K++ F++   S    T YF A SE E ++W+ S+ + I ++ 
Sbjct: 68  TTSKKKFVFKIIHLSKDHRTWYFSAKSEDEMKEWMESLRKEIDRYC 113

SH3BP2 (the gene that encodes the adaptor protein 3BP2), HD, ITU, IT10C3, and ADD1 are located near the Huntington's Disease Gene on Human Chromosome 4pl6.3. SH3BP2 lies in a region that is often missing in individuals with Wolf-Hirschhorn syndrome (WHS). Gain of function mutations in SH3BP2 causes enhanced B-cell antigen receptor (BCR)-mediated activation of nuclear factor of activated T cells (NFAT), resulting in a rare, genetic disorder called cherubism. This results in an increase in the signaling complex formation with Syk, phospholipase C-gamma2 (PLC-gamma2), and Vav1. It was recently discovered that Tankyrase regulates 3BP2 stability through ADP-ribosylation and ubiquitylation by the E3-ubiquitin ligase. Cherubism mutations uncouple 3BP2 from Tankyrase-mediated protein destruction, which results in its stabilization and subsequent hyperactivation of the Src, Syk, and Vav signaling pathways. SH3BP2 is also a potential negative regulator of the abl oncogene. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 113

>gnl|CDD|241442 cd13288, PH_Ses, Sesquipedalian family Pleckstrin homology (PH) domain

 Score = 63.8 bits (156), Expect = 4e-14
 Identities = 32/103 (31%), Positives = 59/103 (57%), Gaps = 11/103 (10%)

Query: 25  SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASK-PRGVIPVASCLTVKG 83
           S  ++ G+L K+GE   ++++RWFVLK   LF+F++    +  + P GVI +  C TV+ 
Sbjct: 6   SPVDKEGYLWKKGERNTSYQKRWFVLKGNLLFYFEK----KGDREPLGVIVLEGC-TVEL 60

Query: 84  AEDVLNKQYAFELSTRTE---TMYFIADSEKEKEDWINSIGRS 123
           +ED   + YAF +        +    A+S+++ E W+ ++ R+
Sbjct: 61  SED--EEPYAFAIRFDGPGSRSYVLAAESQEDMESWMKALSRA 101

The sesquipedalian family has 2 mammalian members: Ses1 and Ses2, which are also callled 7 kDa inositol polyphosphate phosphatase-interacting protein 1 and 2. They play a role in endocytic trafficking and are required for receptor recycling from endosomes, both to the trans-Golgi network and the plasma membrane. Members of this family form homodimers and heterodimers. Sesquipedalian interacts with inositol polyphosphate 5-phosphatase OCRL-1 (INPP5F) also known as Lowe oculocerebrorenal syndrome protein, a phosphatase enzyme that is involved in actin polymerization and is found in the trans-Golgi network and INPP5B. Sesquipedalian contains a single PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 120

>gnl|CDD|241409 cd13255, PH_TAAP2-like, Tandem PH-domain-containing protein 2 Pleckstrin homology (PH) domain

 Score = 63.6 bits (155), Expect = 5e-14
 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 4/104 (3%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL 88
           ++G+L K+GE  KTW++RWFVL+  KL ++K     R  +   +  + +C  V     + 
Sbjct: 8   KAGYLEKKGERRKTWKKRWFVLRPTKLAYYKNDKEYRLLRLIDLTDIHTCTEV----QLK 63

Query: 89  NKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVT 132
                F + T   T Y  ADS+ E E WI++I  +      ++T
Sbjct: 64  KHDNTFGIVTPARTFYVQADSKAEMESWISAINLARQALRATIT 107

The binding of TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP2 contains two sequential PH domains in which the C-terminal PH domain specifically binds PtdIns(3,4)P2 with high affinity. The N-terminal PH domain does not interact with any phosphoinositide tested. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. The members here are most sequence similar to TAPP2 proteins, but may not be actual TAPP2 proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|241435 cd13281, PH_PLEKHD1, Pleckstrin homology (PH) domain containing, family D (with coiled-coil domains) member 1 PH domain

 Score = 62.4 bits (152), Expect = 2e-13
 Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 16/119 (13%)

Query: 13  NQLSDYDSTEFWSNPERSGWLTKQ--GEYIKTWRRRWFVLKQGKLFWFKESTVTRASK-- 68
                 D +   +  + SG L K+  G     W +R+FVLK+  L ++ ES      K  
Sbjct: 1   RISDLDDFS---TKVQLSGVLWKRPFGRQSAKWSKRFFVLKECFLLYYAESEKKDFEKTR 57

Query: 69  -----PRGVIPVASCLTVKGAEDVLNKQYAFELSTR--TETMYFIADSEKEKEDWINSI 120
                P+GVIP+  C +++   D   + Y F +S      ++   ADSE+E+E W++ +
Sbjct: 58  RFNIHPKGVIPLGGC-SIEAGRDP-GRPYCFLISHPDFKGSIILAADSEEEQESWLDML 114

Human PLEKHD1 (also called UPF0639, pleckstrin homology domain containing, family D (with M protein repeats) member 1) is a single transcript and contains a single PH domain. PLEKHD1 is conserved in human, chimpanzee, , dog, cow, mouse, chicken, zebrafish, and Caenorhabditis elegans. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 139

>gnl|CDD|241452 cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin homology (PH) domain, repeat 1

 Score = 61.1 bits (149), Expect = 3e-13
 Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 4/91 (4%)

Query: 30  SGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLN 89
           SGWL K+    KTW++RWFVL+  +L ++K+    +  K R VI ++    V   +D   
Sbjct: 9   SGWLLKRSRKTKTWKKRWFVLRPCQLSYYKDE---KEYKLRRVINLSELTAVAPLKDK-K 64

Query: 90  KQYAFELSTRTETMYFIADSEKEKEDWINSI 120
           ++  F + T ++  +F A SEK+  +W+ +I
Sbjct: 65  RKNVFAIYTPSKNYHFQASSEKDANEWVEAI 95

The functions of these fungal proteins are unknown, but they all contain 2 PH domains. This cd represents the first PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241417 cd13263, PH_RhoGap25-like, Rho GTPase activating protein 25 and related proteins Pleckstrin homology (PH) domain

 Score = 61.2 bits (149), Expect = 4e-13
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 15/113 (13%)

Query: 27  PERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAED 86
             +SGWL KQG  +K W+RRWFVL+  +L+++K+      SKP+G IP+    TVK    
Sbjct: 3   VIKSGWLKKQGGIVKNWQRRWFVLRGDQLYYYKDE---DESKPQGCIPLPGN-TVKELPF 58

Query: 87  VLNK--QYAFEL---------STRTETMYFIADSEKEKEDWINSIGRSIVQHS 128
              +  ++ FE+         S   ++   +A+S+ E E+W+  I R I    
Sbjct: 59  NPEEPGKFLFEIIPGDGGTRRSANHDSYLLMANSQAEMEEWVKVIRRVIGSPF 111

RhoGAP25 (also called ArhGap25) like other RhoGaps are involved in cell polarity, cell morphology and cytoskeletal organization. They act as GTPase activators for the Rac-type GTPases by converting them to an inactive GDP-bound state and control actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity and are able to suppress RAC1 and CDC42 activity in vitro. Overexpression of these proteins induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. This hierarchy contains RhoGAP22, RhoGAP24, and RhoGAP25. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241450 cd13296, PH2_MyoX, Myosin X Pleckstrin homology (PH) domain, repeat 2

 Score = 58.6 bits (142), Expect = 3e-12
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 15/113 (13%)

Query: 29  RSGWLTKQGEYI-----KTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKG 83
           +SGWL K+G        K W+ RWFVL+   L +++       +K  G I + S   +  
Sbjct: 9   KSGWLYKKGGGSSTLSRKNWKSRWFVLRDTVLKYYE--NDQEGAKALGTIDIRSAKEIV- 65

Query: 84  AEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSEI 136
             D   K+  F+++T + T +F+A+S ++   W + + R       S T+ EI
Sbjct: 66  --DNTPKENGFDITTPSRTYHFVAESPEDASQWFSVLTRVH-----SATEQEI 111

MyoX, a MyTH-FERM myosin, is a molecular motor that has crucial functions in the transport and/or tethering of integrins in the actin-based extensions known as filopodia, microtubule binding, and in netrin-mediated axon guidance. It functions as a dimer. MyoX walks on bundles of actin, rather than single filaments, unlike the other unconventional myosins. MyoX is present in organisms ranging from humans to choanoflagellates, but not in Drosophila and Caenorhabditis elegans.MyoX consists of a N-terminal motor/head region, a neck made of 3 IQ motifs, and a tail consisting of a coiled-coil domain, a PEST region, 3 PH domains, a myosin tail homology 4 (MyTH4), and a FERM domain at its very C-terminus. The first PH domain in the MyoX tail is a split-PH domain, interupted by the second PH domain such that PH 1a and PH 1b flanks PH 2. The third PH domain (PH 3) follows the PH 1b domain. This cd contains the second PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 111

>gnl|CDD|241530 cd13379, PH_RhoGap24, Rho GTPase activating protein 24 Pleckstrin homology (PH) domain

 Score = 57.3 bits (138), Expect = 1e-11
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 13/106 (12%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL 88
           + GWL KQG ++KTW  RWFVLK  +L++FK+   T   KP G I +      +   +  
Sbjct: 5   KCGWLRKQGGFVKTWHTRWFVLKGDQLYYFKDEDET---KPLGTIFLPGNRVTEHPCNEE 61

Query: 89  NK-QYAFE---------LSTRTETMYFIADSEKEKEDWINSIGRSI 124
              ++ FE         ++   ET   +A ++ + EDW+ SI R I
Sbjct: 62  EPGKFLFEVVPGGDRERMTANHETYLLMASTQNDMEDWVKSIRRVI 107

RhoGap24 (also called ARHGAP24, p73RhoGAp, and Filamin-A-associated RhoGAP) like other RhoGAPs are involved in cell polarity, cell morphology and cytoskeletal organization. They act as GTPase activators for the Rac-type GTPases by converting them to an inactive GDP-bound state and control actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity and are able to suppress RAC1 and CDC42 activity in vitro. Overexpression of these proteins induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241429 cd13275, PH_M-RIP, Myosin phosphatase-RhoA Interacting Protein Pleckstrin homology (PH) domain

 Score = 56.2 bits (136), Expect = 2e-11
 Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 4/99 (4%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL 88
           + GWL KQ E    W++ WFVL+   L ++++S    A +  GVI +++C  V   E  +
Sbjct: 1   KKGWLMKQDED-GEWKKHWFVLRDASLRYYRDSVAEEAGELDGVIDLSTCTNV--TELPV 57

Query: 89  NKQYAFELSTRTETMYFI-ADSEKEKEDWINSIGRSIVQ 126
            + Y F++ T     Y + A +   + +WI +I ++   
Sbjct: 58  QRNYGFQIKTWDGKRYVLSAMTSGIRRNWIQAIRKAAGL 96

M-RIP is proposed to play a role in myosin phosphatase regulation by RhoA. M-RIP contains 2 PH domains followed by a Rho binding domain (Rho-BD), and a C-terminal myosin binding subunit (MBS) binding domain (MBS-BD). The amino terminus of M-RIP with its adjacent PH domains and polyproline motifs mediates binding to both actin and Galpha. M-RIP brings RhoA and MBS into close proximity where M-RIP can target RhoA to the myosin phosphatase complex to regulate the myosin phosphorylation state. M-RIP does this via its C-terminal coiled-coil domain which interacts with the MBS leucine zipper domain of myosin phosphatase, while its Rho-BD, directly binds RhoA in a nucleotide-independent manner. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 103

>gnl|CDD|241274 cd01241, PH_PKB, Protein Kinase B-like pleckstrin homology (PH) domain

 Score = 56.6 bits (137), Expect = 3e-11
 Identities = 24/46 (52%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 31 GWLTKQGEYIKTWRRRWFVLK--QGKLFWFKESTVTRASKPRGVIP 74
          GWLTK+GEYIKTWR RWFVLK   GK   +KE    +   P     
Sbjct: 7  GWLTKRGEYIKTWRPRWFVLKSDDGKFKGYKEKPQDKDVDPTPKPL 52

PKB (also called Akt), a member of the AGC kinase family, is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase which alters the activity of the targeted protein. The name AGC is based on the three proteins that it is most similar to cAMP-dependent protein kinase 1 (PKA; also known as PKAC), cGMP-dependent protein kinase (PKG; also known as CGK1) and protein kinase C (PKC). Human Akt has three isoforms derived for distinct genes: Akt1/PKBalpha, Akt2/PKBbeta, and Akt3/PKBgamma. All Akts have an N-terminal PH domain with an activating Thr phosphorylation site, a kinase domain, and a short C-terminal regulatory tail with an activating Ser phosphorylation site. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. The phosphorylation of Akt at its Thr and Ser phosphorylation sites leads to increased Akt activity toward forkhead transcription factors, the mammalian target of rapamycin (mTOR), and the Bcl-xL/Bcl-2-associated death promoter (BAD), all of which possess a consensus motif R-X-R-XX-ST-B (X = amino acid, B = bulky hydrophobic residue) for Akt phosphorylation. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 121

>gnl|CDD|241404 cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain

 Score = 55.3 bits (134), Expect = 6e-11
 Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 9/99 (9%)

Query: 29  RSGWLTKQGEY-IKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCL--TVKGAE 85
           + G+L K+     KTW+RRWF ++ G+L + K     R  K    + V      TVK  E
Sbjct: 1   KEGYLFKRSSNAFKTWKRRWFSIQNGQLVYQK-----RFKKDTPTVVVEDLRLCTVKPCE 55

Query: 86  DVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSI 124
           D+ ++++ FE+ + T++    A+SE++++ WI +I  +I
Sbjct: 56  DI-DRRFCFEVVSPTKSYMLQAESEEDRQAWIQAIQAAI 93

ACAP (also called centaurin beta) functions both as a Rab35 effector and as an Arf6-GTPase-activating protein (GAP) by which it controls actin remodeling and membrane trafficking. ACAP contain an NH2-terminal bin/amphiphysin/Rvs (BAR) domain, a phospholipid-binding domain, a PH domain, a GAP domain, and four ankyrin repeats. The AZAPs constitute a family of Arf GAPs that are characterized by an NH2-terminal pleckstrin homology (PH) domain and a central Arf GAP domain followed by two or more ankyrin repeats. On the basis of sequence and domain organization, the AZAP family is further subdivided into four subfamilies: 1) the ACAPs contain an NH2-terminal bin/amphiphysin/Rvs (BAR) domain (a phospholipid-binding domain that is thought to sense membrane curvature), a single PH domain followed by the GAP domain, and four ankyrin repeats; 2) the ASAPs also contain an NH2-terminal BAR domain, the tandem PH domain/GAP domain, three ankyrin repeats, two proline-rich regions, and a COOH-terminal Src homology 3 domain; 3) the AGAPs contain an NH2-terminal GTPase-like domain (GLD), a split PH domain, and the GAP domain followed by four ankyrin repeats; and 4) the ARAPs contain both an Arf GAP domain and a Rho GAP domain, as well as an NH2-terminal sterile-a motif (SAM), a proline-rich region, a GTPase-binding domain, and five PH domains. PMID 18003747 and 19055940 Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 98

>gnl|CDD|241288 cd01257, PH_IRS, Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

 Score = 55.0 bits (133), Expect = 7e-11
 Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 12/96 (12%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLK------QGKLFWFK-ESTVTRASKPRGVIPVASCLTV 81
           +SG+L K     KT R+R+FVL+        +L +++ E    R ++P+ VIP++SC  +
Sbjct: 5   KSGYLKKL----KTMRKRYFVLRAESHGGPARLEYYENEKKFRRNAEPKRVIPLSSCFNI 60

Query: 82  KGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWI 117
               D  +K +   L T+ E    +A+SE+E+++W 
Sbjct: 61  NKRADAKHK-HLIALYTKDECFGLVAESEEEQDEWY 95

Insulin receptor substrate (IRS) molecules are mediators in insulin signaling and play a role in maintaining basic cellular functions such as growth and metabolism. They act as docking proteins between the insulin receptor and a complex network of intracellular signaling molecules containing Src homology 2 (SH2) domains. Four members (IRS-1, IRS-2, IRS-3, IRS-4) of this family have been identified that differ as to tissue distribution, subcellular localization, developmental expression, binding to the insulin receptor, and interaction with SH2 domain-containing proteins. IRS molecules have an N-terminal PH domain, followed by an IRS-like PTB domain which has a PH-like fold. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.cytoskeletal associated molecules, and in lipid associated enzymes. Length = 106

>gnl|CDD|241268 cd01235, PH_Sbf1_hMTMR5, Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain

 Score = 53.5 bits (129), Expect = 3e-10
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 9/97 (9%)

Query: 31  GWLTKQGEYIKTWRRRWFVLKQGK-LFWFKESTVTRASKPRGVIP------VASCLTVKG 83
           G+L K+G  +K W++RWFVL   K    + ES     +K +GVI       V       G
Sbjct: 7   GYLYKRGALLKGWKQRWFVLDLTKHQLRYYES--KEDTKCKGVIDLQEVESVYPDTPSIG 64

Query: 84  AEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSI 120
           A    +    FEL T     YF+A S +  + WI+ I
Sbjct: 65  APKSPDPGAFFELKTNKRVYYFLAPSAEAAQQWIDVI 101

Sbf1 is a myotubularin-related pseudo-phosphatase. Both Sbf1 and myotubularin interact with the SET domains of Hrx and other epigenetic regulatory proteins, but Sbf1 lacks phosphatase activity due to several amino acid changes in its structurally preserved catalytic pocket. It contains pleckstrin (PH), GEF, and myotubularin homology domains that are thought to be responsible for signaling and growth control. Sbf1 functions as an inhibitor of cellular growth. The N-terminal GEF homology domain serves to inhibit the transforming effects of Sbf1. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241369 cd13215, PH-GRAM1_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 1

 Score = 52.6 bits (127), Expect = 9e-10
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIP---VASCLTVKGAE 85
           +SG+L+K+G+    + R WFVLK   L W++ ST      P G I      S       +
Sbjct: 31  KSGYLSKRGKRTPRYNRYWFVLKGDVLSWYRSSTDLYF--PHGTIDLRYGISAEITDKDK 88

Query: 86  DVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSI 124
           +  +    F+++T + T  F ADSE   ++W+ ++ + I
Sbjct: 89  ETTH----FKITTNSRTYTFKADSEPSAKEWVKALQKVI 123

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 130

>gnl|CDD|241427 cd13273, PH_SWAP-70, Switch-associated protein-70 Pleckstrin homology (PH) domain

 Score = 52.3 bits (126), Expect = 1e-09
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 31  GWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNK 90
           G+L K+G  + TWR RWFVLK   L ++K   +      +G I + S   V+   D   K
Sbjct: 12  GYLWKKGHLLPTWRERWFVLKPNSLSYYKSEDLKE---KKGEIALDSNCCVESLPDREGK 68

Query: 91  QYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRS 130
           +  F + T  +T    A   K +++WI +I ++ ++ S+ 
Sbjct: 69  KCRFCVKTPDKTYELSASDHKTRQEWIQAI-QTAIRLSQE 107

SWAP-70 (also called Differentially expressed in FDCP 6/DEF-6 or IRF4-binding protein) functions in cellular signal transduction pathways (in conjunction with Rac), regulates cell motility through actin rearrangement, and contributes to the transformation and invasion activity of mouse embryo fibroblasts. Metazoan SWAP-70 is found in B lymphocytes, mast cells, and in a variety of organs. Metazoan SWAP-70 contains an N-terminal EF-hand motif, a centrally located PH domain, and a C-terminal coiled-coil domain. The PH domain of Metazoan SWAP-70 contains a phosphoinositide-binding site and a nuclear localization signal (NLS), which localize SWAP-70 to the plasma membrane and nucleus, respectively. The NLS is a sequence of four Lys residues located at the N-terminus of the C-terminal a-helix; this is a unique characteristic of the Metazoan SWAP-70 PH domain. The SWAP-70 PH domain binds PtdIns(3,4,5)P3 and PtdIns(4,5)P2 embedded in lipid bilayer vesicles. There are additional plant SWAP70 proteins, but these are not included in this hierarchy. Rice SWAP70 (OsSWAP70) exhibits GEF activity toward the its Rho GTPase, OsRac1, and regulates chitin-induced production of reactive oxygen species and defense gene expression in rice. Arabidopsis SWAP70 (AtSWAP70) plays a role in both PAMP- and effector-triggered immunity. Plant SWAP70 contains both DH and PH domains, but their arrangement is the reverse of that in typical DH-PH-type Rho GEFs, wherein the DH domain is flanked by a C-terminal PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|241470 cd13316, PH_Boi, Boi family Pleckstrin homology domain

 Score = 51.6 bits (124), Expect = 1e-09
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 5/93 (5%)

Query: 30  SGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLN 89
           SGW+ K+GE   TW+ R+FVLK  +L++ K       SK +G+I +          +   
Sbjct: 2   SGWMKKRGERYGTWKTRYFVLKGTRLYYLKSEN---DSKEKGLIDLTGHRVTVDDSNSKP 58

Query: 90  KQYAFEL--STRTETMYFIADSEKEKEDWINSI 120
            +Y F+L      +  YF  D ++   +W+ ++
Sbjct: 59  GRYGFKLVPPAVEKVHYFAVDEKEVLREWMKAL 91

Yeast Boi proteins Boi1 and Boi2 are functionally redundant and important for cell growth with Boi mutants displaying defects in bud formation and in the maintenance of cell polarity.They appear to be linked to Rho-type GTPase, Cdc42 and Rho3. Boi1 and Boi2 display two-hybrid interactions with the GTP-bound ("active") form of Cdc42, while Rho3 can suppress of the lethality caused by deletion of Boi1 and Boi2. These findings suggest that Boi1 and Boi2 are targets of Cdc42 that promote cell growth in a manner that is regulated by Rho3. Boi proteins contain a N-terminal SH3 domain, followed by a SAM (sterile alpha motif) domain, a proline-rich region, which mediates binding to the second SH3 domain of Bem1, and C-terminal PH domain. The PH domain is essential for its function in cell growth and is important for localization to the bud, while the SH3 domain is needed for localization to the neck. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 95

>gnl|CDD|241478 cd13324, PH_Gab-like, Grb2-associated binding protein family Pleckstrin homology (PH) domain

 Score = 51.6 bits (124), Expect = 1e-09
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 18/106 (16%)

Query: 29  RSGWLTKQGEYIKT----WRRRWFVLKQGKLF-------WFKESTVTRASKPRGVIPVAS 77
             GWL K     K     W++RWFVL+ G+L        ++K+       KP G I +  
Sbjct: 1   YEGWLRKSPPEKKIKRAAWKKRWFVLRSGRLSGDPDVLEYYKDDH---CKKPIGAIDLDE 57

Query: 78  CLTVKGAEDVLNK----QYAFELSTRTETMYFIADSEKEKEDWINS 119
           C  V        K    Q+ F++ T   T Y +A++E+E   W+  
Sbjct: 58  CEQVDAGLTFEYKEFKNQFIFDIVTPKRTYYLVAETEEEMNKWVRC 103

Gab proteins are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. There are 3 families: Gab1, Gab2, and Gab3. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 103

>gnl|CDD|241529 cd13378, PH_RhoGAP2, Rho GTPase activating protein 2 Pleckstrin homology (PH) domain

 Score = 51.9 bits (124), Expect = 2e-09
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 19/110 (17%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVK---GAE 85
           ++GWL KQ   +K W++RWFVL+  +LF++K+   T   KP+G I +      +     E
Sbjct: 5   KAGWLKKQRSIMKNWQQRWFVLRGDQLFYYKDEEET---KPQGCISLQGSQVNELPPNPE 61

Query: 86  DVLNKQYAFELS-----------TRTETMYFIADSEKEKEDWINSIGRSI 124
           +    ++ FE+               E    +A+S+ + EDW+ +I R I
Sbjct: 62  E--PGKHLFEILPGGAGDREKVPMNHEAFLLMANSQSDMEDWVKAIRRVI 109

RhoGAP2 (also called RhoGap22 or ArhGap22) are involved in cell polarity, cell morphology and cytoskeletal organization. They activate a GTPase belonging to the RAS superfamily of small GTP-binding proteins. The encoded protein is insulin-responsive, is dependent on the kinase Akt, and requires the Akt-dependent 14-3-3 binding protein which binds sequentially to two serine residues resulting in regulation of cell motility. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 116

>gnl|CDD|241535 cd13384, PH_Gab2_2, Grb2-associated binding protein family pleckstrin homology (PH) domain

 Score = 51.7 bits (124), Expect = 2e-09
 Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 12/104 (11%)

Query: 29  RSGWLTKQGEYIK----TWRRRWFVLKQGKL---FWFKESTVTRASKPRGVIPVASCLTV 81
             GWLTK     +     WRRR+FVL+Q ++   ++ +  T     K +G I +  C  V
Sbjct: 5   YEGWLTKSPPEKRIWRAKWRRRYFVLRQSEIPGQYFLEYYTDRTCRKLKGSIDLDQCEQV 64

Query: 82  KGAEDVLNK-----QYAFELSTRTETMYFIADSEKEKEDWINSI 120
                   K     Q+ F++ T   T Y +AD+E E   W+N I
Sbjct: 65  DAGLTFETKNKLKDQHIFDIRTPKRTYYLVADTEDEMNKWVNCI 108

The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. Members here include insect, nematodes, and crustacean Gab2s. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 115

>gnl|CDD|241282 cd01251, PH2_ADAP, ArfGAP with dual PH domains Pleckstrin homology (PH) domain, repeat 2

 Score = 50.3 bits (121), Expect = 4e-09
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 10/103 (9%)

Query: 29  RSGWLTKQGEYIKT-WRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCL----TVKG 83
           + G+L K G      +R+RWF L   +L +FK+      + P+G I + S        +G
Sbjct: 4   KEGYLEKTGPKQTDGFRKRWFTLDDRRLMYFKDPL---DAFPKGEIFIGSKEEGYSVREG 60

Query: 84  AEDVLNK--QYAFELSTRTETMYFIADSEKEKEDWINSIGRSI 124
               +     + F L T   T    A++E+E+ +WI +I + +
Sbjct: 61  LPAGIKGHWGFGFTLVTPDRTFVLSAETEEERREWITAIQKVL 103

ADAP (also called centaurin alpha) is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. This cd contains the second PH domain repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 105

>gnl|CDD|241536 cd13385, PH_Gab3, Grb2-associated binding protein 3 pleckstrin homology (PH) domain

 Score = 50.7 bits (121), Expect = 6e-09
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 19/109 (17%)

Query: 30  SGWLTKQGEYIK----TWRRRWFVLKQGK-------LFWFKESTVTRASKPRGVIPVASC 78
           +GWL K     K     WR+RWFVL++G+       L +++      + KP  VI +  C
Sbjct: 9   TGWLIKSPPEKKLKRYAWRKRWFVLRRGRMSGNPDVLEYYRNKH---SKKPIRVIDLNEC 65

Query: 79  LTVKGAEDVLNK-----QYAFELSTRTETMYFIADSEKEKEDWINSIGR 122
              K A     K      + F + T T T Y +A +E+E +DW+ +I +
Sbjct: 66  EVTKHAGVNFIKKEFQNNFVFIVKTTTRTFYLVAKTEEEMQDWVQNISQ 114

The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. The members in this cd include the Gab1, Gab2, and Gab3 proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 125

>gnl|CDD|241291 cd01260, PH_CNK_mammalian-like, Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

 Score = 50.1 bits (120), Expect = 7e-09
 Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 10/107 (9%)

Query: 26  NPERSGWLTKQGE----YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTV 81
             +  GWL K+ E    + + W+R WFVLK   L+W+      +  K  G I +     +
Sbjct: 12  RGDCDGWLWKKKEAKGFFGQKWKRYWFVLKGSSLYWY---NNPQDEKAEGFINLPD-FKI 67

Query: 82  KGAEDVLNKQYAFELS-TRTETMYFIADSEKEKEDWINSIGRSIVQH 127
           + A +   K+YAF+ S  + +T YF A++  +   W++ +  +I ++
Sbjct: 68  ERASEC-KKKYAFKASHPKIKTFYFAAENLDDMNKWLSKLITAINKY 113

CNK family members function as protein scaffolds, regulating the activity and the subcellular localization of RAS activated RAF. There is a single CNK protein present in Drosophila and Caenorhabditis elegans in contrast to mammals which have 3 CNK proteins (CNK1, CNK2, and CNK3). All of the CNK members contain a sterile a motif (SAM), a conserved region in CNK (CRIC) domain, and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and, with the exception of CNK3, a PH domain. A CNK2 splice variant CNK2A also has a PDZ domain-binding motif at its C terminus and Drosophila CNK (D-CNK) also has a domain known as the Raf-interacting region (RIR) that mediates binding of the Drosophila Raf kinase. This cd contains CNKs from mammals, chickens, amphibians, fish, and crustacea. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241438 cd13284, PH_OSBP_ORP4, Human Oxysterol binding protein and OSBP-related protein 4 Pleckstrin homology (PH) domain

 Score = 48.9 bits (117), Expect = 2e-08
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 8/92 (8%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL 88
             GWL K   Y+K ++RRWFVL  G L +++ +    A   RG I +A  L     ED  
Sbjct: 1   FKGWLLKWTNYLKGYQRRWFVLSNGLLSYYR-NQAEMAHTCRGTINLAGALIHT--EDSC 57

Query: 89  NKQYAFELSTRTETMYFI-ADSEKEKEDWINS 119
           N    F +S      + + A SE E++ W+ +
Sbjct: 58  N----FVISNGGTQTFHLKASSEVERQRWVTA 85

Human OSBP is proposed to function is sterol-dependent regulation of ERK dephosphorylation and sphingomyelin synthesis as well as modulation of insulin signaling and hepatic lipogenesis. It contains a N-terminal PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. OSBPs and Osh1p PH domains specifically localize to the Golgi apparatus in a PtdIns4P-dependent manner. ORP4 is proposed to function in Vimentin-dependent sterol transport and/or signaling. Human ORP4 has 2 forms, a long (ORP4L) and a short (ORP4S). ORP4L contains a N-terminal PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. ORP4S is truncated and contains only an OSBP-related domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 99

>gnl|CDD|241480 cd13326, PH_CNK_insect-like, Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 7/92 (7%)

Query: 31  GWLT---KQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDV 87
           GWL    ++G+    W +RWFVLK   L+ F+    T+A     VI      TV  A +V
Sbjct: 3   GWLYQRRRKGKGGGKWAKRWFVLKGSNLYGFRSQESTKA---DCVI-FLPGFTVSPAPEV 58

Query: 88  LNKQYAFELSTRTETMYFIADSEKEKEDWINS 119
            +++YAF++       YF A+S+++ + W++ 
Sbjct: 59  KSRKYAFKVYHTGTVFYFAAESQEDMKKWLDL 90

CNK family members function as protein scaffolds, regulating the activity and the subcellular localization of RAS activated RAF. There is a single CNK protein present in Drosophila and Caenorhabditis elegans in contrast to mammals which have 3 CNK proteins (CNK1, CNK2, and CNK3). All of the CNK members contain a sterile a motif (SAM), a conserved region in CNK (CRIC) domain, and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and a PH domain. A CNK2 splice variant CNK2A also has a PDZ domain-binding motif at its C terminus and Drosophila CNK (D-CNK) also has a domain known as the Raf-interacting region (RIR) that mediates binding of the Drosophila Raf kinase. This cd contains CNKs from insects, spiders, mollusks, and nematodes. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 90

>gnl|CDD|241266 cd01233, PH_KIFIA_KIFIB, KIFIA and KIFIB protein pleckstrin homology (PH) domain

 Score = 48.7 bits (117), Expect = 2e-08
 Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 26  NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE 85
              + G+L    +    W RRW VL++  L  +           RGVI +++   V+ + 
Sbjct: 13  VVSKKGYLLFLEDATDGWVRRWVVLRRPYLHIYSSEKDGDE---RGVINLSTA-RVEYSP 68

Query: 86  DV---LNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIV 125
           D    L +   F + T T +    A SEKE  DW+ +I   + 
Sbjct: 69  DQEALLGRPNVFAVYTPTNSYLLQARSEKEMHDWLYAIDPLLA 111

The kinesin-3 family motors KIFIA (Caenorhabditis elegans homolog unc-104) and KIFIB transport synaptic vesicle precursors that contain synaptic vesicle proteins, such as synaptophysin, synaptotagmin and the small GTPase RAB3A, but they do not transport organelles that contain plasma membrane proteins. They have a N-terminal motor domain, followed by a coiled-coil domain, and a C-terminal PH domain. KIF1A adopts a monomeric form in vitro, but acts as a processive dimer in vivo. KIF1B has alternatively spliced isoforms distinguished by the presence or absence of insertion sequences in the conserved amino-terminal region of the protein; this results in their different motor activities. KIF1A and KIF1B bind to RAB3 proteins through the adaptor protein mitogen-activated protein kinase (MAPK) -activating death domain (MADD; also calledDENN), which was first identified as a RAB3 guanine nucleotide exchange factor (GEF). PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 111

>gnl|CDD|241271 cd01238, PH_Btk, Bruton's tyrosine kinase pleckstrin homology (PH) domain

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 14/102 (13%)

Query: 29  RSGWLTK--QGEYI---KTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKG 83
           + G L K  QG+       ++ RWFVL +  L ++ E    +  K +G I ++    +K 
Sbjct: 1   KEGLLVKRSQGKKRFGPVNYKERWFVLTKSSLSYY-EGDGGKRGKEKGSIDLSK---IKC 56

Query: 84  AEDV-----LNKQYAFELSTRTETMYFIADSEKEKEDWINSI 120
            E+V       ++Y F++     T+Y  A SE+++++WI ++
Sbjct: 57  VEEVKDDASFERKYPFQVVYDDYTLYVFAPSEEDRDEWILAL 98

Btk is a member of the Tec family of cytoplasmic protein tyrosine kinases that includes BMX, IL2-inducible T-cell kinase (Itk) and Tec. Btk plays a role in the maturation of B cells. Tec proteins general have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. The Btk PH domain binds phosphatidylinositol 3,4,5-trisphosphate and responds to signalling via phosphatidylinositol 3-kinase. The PH domain is also involved in membrane anchoring which is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain. This results in severe human immunodeficiency known as X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice.PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 140

>gnl|CDD|241297 cd01266, PH_Gab1_Gab2, Grb2-associated binding proteins 1 and 2 pleckstrin homology (PH) domain

 Score = 47.6 bits (113), Expect = 8e-08
 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 20/107 (18%)

Query: 30  SGWLTKQGEYIK----TWRRRWFVLKQGKLF-------WFKESTVTRASKPRGVIPVASC 78
           SGWL K     K     W++RWFVL+ G+L        ++K      A KP  VI +  C
Sbjct: 7   SGWLRKSPPEKKLRRYAWKKRWFVLRSGRLSGDPDVLEYYKND---HAKKPIRVIDLNLC 63

Query: 79  LTVKGAEDVLNKQ-----YAFELSTRTETMYFIADSEKEKEDWINSI 120
             V  A    NK+     Y F++ T     Y +A++E++   W+ +I
Sbjct: 64  EQVD-AGLTFNKKELENSYIFDIKTIDRIFYLVAETEEDMNKWVRNI 109

The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. The members in this cd include the Gab1 and Gab2 proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 123

>gnl|CDD|241456 cd13302, PH2_Pleckstrin_2, Pleckstrin 2 Pleckstrin homology (PH) domain, repeat 2

 Score = 46.7 bits (111), Expect = 1e-07
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 13/108 (12%)

Query: 22  EFWSNPERSGWLTKQGEYIKTWRRRWFVLKQ--GKLFWFKESTVTRASKPRGVIPVASCL 79
           EF     + G L KQG   K W+ R FVL+     L ++  +   +   P G I +  C+
Sbjct: 2   EFRGIIVKQGCLLKQGHRRKNWKVRKFVLRDDPAYLHYYDPA---KGEDPLGAIHLRGCV 58

Query: 80  TVKGAEDVLNKQYA------FELSTRTETMYFI-ADSEKEKEDWINSI 120
            V   ED  N          FE+ T  E  Y++ A +  E+ +WI +I
Sbjct: 59  -VTAVEDNSNPAKGSVEGNLFEIITADEVHYYLQAATPAERTEWIKAI 105

Pleckstrin is a protein found in platelets. This name is derived from platelet and leukocyte C kinase substrate and the KSTR string of amino acids. Pleckstrin 2 contains two PH domains and a DEP (dishvelled, egl-10, and pleckstrin) domain. Unlike pleckstrin 1, pleckstrin 2 does not contain obvious sites of PKC phosphorylation. Pleckstrin 2 plays a role in actin rearrangement, large lamellipodia and peripheral ruffle formation, and may help orchestrate cytoskeletal arrangement. The PH domains of pleckstrin 2 are thought to contribute to lamellipodia formation. This cd contains the second PH domain repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 109

>gnl|CDD|241407 cd13253, PH1_ARAP, ArfGAP with RhoGAP domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain, repeat 1

 Score = 45.8 bits (109), Expect = 2e-07
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 13/96 (13%)

Query: 28  ERSGWLTK---QGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA 84
            +SGWL K   QG Y+  +++RW V     L +F      +    +G+IP++S  TV+  
Sbjct: 1   TKSGWLDKLSPQGNYV--FQKRWVVFDGDSLRYFNSE---KEMYSKGIIPLSSIKTVRSV 55

Query: 85  EDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSI 120
            D  NK   FE+ T   T  F A+SE E+  W++++
Sbjct: 56  GD--NK---FEVVTGNRTFVFRAESEDERNLWVSTL 86

ARAP proteins (also called centaurin delta) are phosphatidylinositol 3,4,5-trisphosphate-dependent GTPase-activating proteins that modulate actin cytoskeleton remodeling by regulating ARF and RHO family members. They bind phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) and phosphatidylinositol 3,4-bisphosphate (PtdIns(3,4,5)P2) binding. There are 3 mammalian ARAP proteins: ARAP1, ARAP2, and ARAP3. All ARAP proteins contain a N-terminal SAM (sterile alpha motif) domain, 5 PH domains, an ArfGAP domain, 2 ankyrin domain, A RhoGap domain, and a Ras-associating domain. This hierarchy contains the first PH domain in ARAP. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 93

>gnl|CDD|241414 cd13260, PH_RASA1, RAS p21 protein activator (GTPase activating protein) 1 Pleckstrin homology (PH) domain

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 11/101 (10%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGK--LFWFKESTVTRASKPRGVIPVASCLTVKGAED 86
           + G+L K+    K W+  +FVL+  +  L++F+    T   KP+G+I ++   +V    D
Sbjct: 5   KKGYLLKKSGKNKKWKNLYFVLEGAEQHLYFFENEKRT---KPKGLIDLSYS-SVYPVHD 60

Query: 87  VL-NKQYAFELSTRT----ETMYFIADSEKEKEDWINSIGR 122
            L  +   F++  R        Y  AD+ +  +DW+ ++  
Sbjct: 61  SLFGRPNCFQIVVRALNESTIYYLCADTAELAQDWMKALRA 101

RASA1 (also called RasGap1 or p120) is a member of the RasGAP family of GTPase-activating proteins. RASA1 contains N-terminal SH2-SH3-SH2 domains, followed by two C2 domains, a PH domain, a RasGAP domain, and a BTK domain. Splice variants lack the N-terminal domains. It is a cytosolic vertebrate protein that acts as a suppressor of RAS via its C-terminal GAP domain function, enhancing the weak intrinsic GTPase activity of RAS proteins resulting in the inactive GDP-bound form of RAS, allowing control of cellular proliferation and differentiation. Additionally, it is involved in mitogenic signal transmission towards downstream interacting partners through its N-terminal SH2-SH3-SH2 domains. RASA1 interacts with a number of proteins including: G3BP1, SOCS3, ANXA6, Huntingtin, KHDRBS1, Src, EPHB3, EPH receptor B2, Insulin-like growth factor 1 receptor, PTK2B, DOK1, PDGFRB, HCK, Caveolin 2, DNAJA3, HRAS, GNB2L1 and NCK1. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 103

>gnl|CDD|241432 cd13278, PH_Bud4, Bud4 Pleckstrin homology (PH) domain

 Score = 46.4 bits (111), Expect = 3e-07
 Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 20/115 (17%)

Query: 31  GWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNK 90
           G+L ++G   + WRRR+F L+  KL  + E  VTR  KPR  I +   + V   +D   +
Sbjct: 23  GYLLQEGGDCEYWRRRFFKLQGTKLVAYHE--VTR--KPRATINLLKVVDVVDDDDARER 78

Query: 91  QY--------------AFELS-TRTETMYFIADSEKEKEDWINSIGRSIVQHSRS 130
                            F L     E + F ADS++EK DW + + + +V+ +R 
Sbjct: 79  TSSFKRNFTDLVLFEECFRLVFANGEVIDFYADSKEEKADWYSKL-KEVVELNRF 132

Bud4 is an anillin-like yeast protein involved in the formation and the disassembly of the double ring structure formed by the septins during cytokinesis. Bud4 acts with Bud3 and and in parallel with septin phosphorylation by the p21-activated kinase Cla4 and the septin-dependent kinase Gin4. Bud4 is regulated by the cyclin-dependent protein kinase Cdk1, the master regulator of cell cycle progression. Bud4 contains an anillin-like domain followed by a PH domain. In addition there are two consensus Cdk phosphorylation sites: one at the N-terminus and one right before the C-terminal PH domain. Anillins also have C-terminal PH domains. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 139

>gnl|CDD|241415 cd13261, PH_RasGRF1_2, Ras-specific guanine nucleotide-releasing factors 1 and 2 Pleckstrin homology (PH) domain

 Score = 45.1 bits (107), Expect = 7e-07
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 16/104 (15%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFK-ESTVTRASKPRGVIPVASC-----LTVK 82
           R G+L+K+      W  +WF L Q  LF+F+ ES+    S+P G+  +  C      + K
Sbjct: 7   RRGYLSKKSSDNSKWHTKWFALYQNLLFYFENESS----SRPSGLYLLEGCYCERAPSPK 62

Query: 83  GA---EDVLNKQYAFELSTRTETM---YFIADSEKEKEDWINSI 120
            A   +D L KQ+ F +S R E         ++E + + W+ +I
Sbjct: 63  RAGKGKDHLEKQHYFTISFRHENQRQYELRTETETDCDTWVEAI 106

RasGRF1 (also called GRF1; CDC25Mm/Ras-specific nucleotide exchange factor CDC25; GNRP/Guanine nucleotide-releasing protein) and RasGRF2 (also called GRF2; Ras guanine nucleotide exchange factor 2) are a family of guanine nucleotide exchange factors (GEFs). They both promote the exchange of Ras-bound GDP by GTP, thereby regulating the RAS signaling pathway. RasGRF1 and RasGRF2 form homooligomers and heterooligomers. GRF1 has 3 isoforms and GRF2 has 2 isoforms. The longest isoforms of RasGRF1 and RasGRF2 contain the following domains: a Rho-GEF domain sandwiched between 2 PH domains, IQ domains, a REM (Ras exchanger motif) domain, and a Ras-GEF domainwhich gives them the capacity to activate both Ras and Rac GTPases in response to signals from a variety of neurotransmitter receptors. Their IQ domains allow them to act as calcium sensors to mediate the actions of NMDA-type and calcium-permeable AMPA-type glutamate receptors. GRF1 also mediates the action of dopamine receptors that signal through cAMP. GRF1 and GRF2 play strikingly different roles in regulating MAP kinase family members, neuronal synaptic plasticity, specific forms of learning and memory, and behavioral responses to psychoactive drugs. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 136

>gnl|CDD|241421 cd13267, PH_DOCK-D, Dedicator of cytokinesis-D subfamily Pleckstrin homology (PH) domain

 Score = 45.0 bits (107), Expect = 8e-07
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 20/121 (16%)

Query: 29  RSGWLTKQGE--------YIKTWRRRWFVLKQGK-----LFWFKESTVTRASKPRGVIPV 75
           + G+L K  E         +K+++RR+F LKQ       L ++K+    ++ + +G I +
Sbjct: 8   KEGYLYKGPENSSMFISLAMKSFKRRFFHLKQLVDGSYILEFYKDE---KSKEAKGTIYL 64

Query: 76  ASCLTVKGAEDVLNKQYAFELSTRTETMY-FIADSEKEKEDWINSIGRSIVQHSRSVTDS 134
            SC  V   ++   +++ FEL  +    Y   A+SE E +DWI+ +   I+Q ++   + 
Sbjct: 65  DSCTGV--VQNSKRRKFCFELRMQDGKSYVLAAESESEMDDWISKL-NKILQINKEQEEQ 121

Query: 135 E 135
            
Sbjct: 122 R 122

DOCK-D subfamily (also called Zizimin subfamily) consists of Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2. DOCK-D has a N-terminal DUF3398 domain, a PH-like domain, a Dock Homology Region 1, DHR1 (also called CZH1), a C2 domain, and a C-terminal DHR2 domain (also called CZH2). Zizimin1 is enriched in the brain, lung, and kidney; zizimin2 is found in B and T lymphocytes, and zizimin3 is enriched in brain, lung, spleen and thymus. Zizimin1 functions in autoinhibition and membrane targeting. Zizimin2 is an immune-related and age-regulated guanine nucleotide exchange factor, which facilitates filopodial formation through activation of Cdc42, which results in activation of cell migration. No function has been determined for Zizimin3 to date. The N-terminal half of zizimin1 binds to the GEF domain through three distinct areas, including CZH1, to inhibit the interaction with Cdc42. In addition its PH domain binds phosphoinositides and mediates zizimin1 membrane targeting. DOCK is a family of proteins involved in intracellular signalling networks. They act as guanine nucleotide exchange factors for small G proteins of the Rho family, such as Rac and Cdc42. There are 4 subfamilies of DOCK family proteins based on their sequence homology: A-D. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 125

>gnl|CDD|241447 cd13293, PH_CpORP2-like, Cryptosporidium-like Oxysterol binding protein related protein 2 Pleckstrin homology (PH) domain

 Score = 43.9 bits (104), Expect = 9e-07
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 8/89 (8%)

Query: 31  GWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNK 90
           G+L K      +W+ R+F+L  G L + K+         +G I +  C      +D L  
Sbjct: 3   GYLKKWTNIFNSWKPRYFILYPGILCYSKQK----GGPKKGTIHLKICDIRLVPDDPLR- 57

Query: 91  QYAFELSTRTETMYFIADSEKEKEDWINS 119
                ++T T  ++  A S +EK  W N+
Sbjct: 58  ---IIINTGTNQLHLRASSVEEKLKWYNA 83

There are 2 types of ORPs found in Cryptosporidium: CpORP1 and CpORP2. Cryptosporium differs from other apicomplexans like Plasmodium, Toxoplasma, and Eimeria which possess only a single long-type ORP consisting of an N-terminal PH domain followed by a C-terminal ligand binding (LB) domain. CpORP2 is like this, but CpORP1 differs and has a truncated N-terminus resulting in only having a LB domain present. The exact functions of these proteins are largely unknown though CpORP1 is thought to be involved in lipid transport across the parasitophorous vacuole membrane. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. In general OSBPs and ORPs have been found to be involved in the transport and metabolism of cholesterol and related lipids in eukaryotes. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 88

>gnl|CDD|241446 cd13292, PH_Osh1p_Osh2p_yeast, Yeast oxysterol binding protein homologs 1 and 2 Pleckstrin homology (PH) domain

 Score = 42.3 bits (100), Expect = 4e-06
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 8/101 (7%)

Query: 27  PERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAED 86
           P   G+L K   Y K ++ RWFVL+ G L +++       S  RG I + +   V    +
Sbjct: 2   PTMKGYLKKWTNYAKGYKTRWFVLEDGVLSYYRHQD-DEGSACRGSINMKNARLVSDPSE 60

Query: 87  VLNKQYAFELSTRTET---MYFIADSEKEKEDWINSIGRSI 124
            L     FE+S++T      Y  A+   E   WI ++ ++I
Sbjct: 61  KLR----FEVSSKTSGSPKWYLKANHPVEAARWIQALQKAI 97

Yeast Osh1p is proposed to function in postsynthetic sterol regulation, piecemeal microautophagy of the nucleus, and cell polarity establishment. Yeast Osh2p is proposed to function in sterol metabolism and cell polarity establishment. Both Osh1p and Osh2p contain 3 N-terminal ankyrin repeats, a PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. OSBP andOsh1p PH domains specifically localize to the Golgi apparatus in a PtdIns4P-dependent manner. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. In general OSBPs and ORPs have been found to be involved in the transport and metabolism of cholesterol and related lipids in eukaryotes. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 103

>gnl|CDD|241445 cd13291, PH_ORP10_ORP11, Human Oxysterol binding protein (OSBP) related proteins 10 and 11 (ORP10 and ORP11) Pleckstrin homology (PH) domain

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 9/100 (9%)

Query: 31  GWLTKQGEYIKTWRRRWFVL--KQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL 88
           G L+K    +K W+ RWFVL  + G L +F  S  ++  KPRG +P+A  +     ED  
Sbjct: 3   GQLSKYTNVVKGWQNRWFVLDPEAGSLEYF-VSEESKNQKPRGSLPLAGAVISPSDED-- 59

Query: 89  NKQYAFELSTRTETMY-FIADSEKEKEDWINSIGRSIVQH 127
              + F ++     MY   A   KE+++W+N + R++ +H
Sbjct: 60  --SHTFTVNAANGEMYKLRAADAKERQEWVNRL-RAVAEH 96

Human ORP10 is involvedt in intracellular transport or organelle positioning and is proposed to function as a regulator of cellular lipid metabolism. Human ORP11 localizes at the Golgi-late endosome interface and is thought to form a dimer with ORP9 functioning as an intracellular lipid sensor or transporter. Both ORP10 and ORP11 contain a N-terminal PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. In general OSBPs and ORPs have been found to be involved in the transport and metabolism of cholesterol and related lipids in eukaryotes. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 107

>gnl|CDD|241428 cd13274, PH_DGK_type2, Type 2 Diacylglycerol kinase Pleckstrin homology (PH) domain

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 23/105 (21%)

Query: 30  SGWLTKQGEYIKTWRRRWFVLKQGKLFW--------FKESTVTRASKPRGVIPVASCLTV 81
            G L KQ    + W++R+F L+   L++        F E  ++ AS       VA C T 
Sbjct: 3   EGPLLKQTSSFQRWKKRYFKLRGRTLYYAKDSKSLIFDEVDLSDAS-------VAECSTK 55

Query: 82  KGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQ 126
                  N  ++F + T    +   A+S KE E+WI+++ +++ Q
Sbjct: 56  -------NVNHSFTVITPFRKLILCAESRKEMEEWISAL-KTVQQ 92

DGK (also called DAGK) catalyzes the conversion of diacylglycerol (DAG) to phosphatidic acid (PA) utilizing ATP as a source of the phosphate. In non-stimulated cells, DGK activity is low and DAG is used for glycerophospholipid biosynthesis. Upon receptor activation of the phosphoinositide pathway, DGK activity increases which drives the conversion of DAG to PA. DGK acts as a switch by terminating the signalling of one lipid while simultaneously activating signalling by another. There are 9 mammalian DGK isoforms all with conserved catalytic domains and two cysteine rich domains. These are further classified into 5 groups according to the presence of additional functional domains and substrate specificity: Type 1 - DGK-alpha, DGK-beta, DGK-gamma - contain EF-hand motifs and a recoverin homology domain; Type 2 - DGK-delta, DGK-eta, and DGK-kappa- contain a pleckstrin homology domain, two cysteine-rich zinc finger-like structures, and a separated catalytic region; Type 3 - DGK-epsilon - has specificity for arachidonate-containing DAG; Type 4 - DGK-zeta, DGK-iota- contain a MARCKS homology domain, ankyrin repeats, a C-terminal nuclear localization signal, and a PDZ-binding motif; Type 5 - DGK-theta - contains a third cysteine-rich domain, a pleckstrin homology domain and a proline rich region. The type 2 DGKs are present as part of this Metazoan DGK hierarchy. They have a N-terminal PH domain, two cysteine rich domains, followed by bipartite catalytic domains, and a C-terminal SAM domain. Their catalytic domains and perhaps other DGK catalytic domains may function as two independent units in a coordinated fashion. They may also require other motifs for maximal activity because several DGK catalytic domains have very little DAG kinase activity when expressed as isolated subunits. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 97

>gnl|CDD|241451 cd13297, PH3_MyoX-like, Myosin X-like Pleckstrin homology (PH) domain, repeat 3

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 7/100 (7%)

Query: 30  SGWLTK--QGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDV 87
            GWL K        T ++RWFVL    L ++K S   R +   G + + S  +V   ++ 
Sbjct: 16  KGWLLKEGGKGGNLTKKKRWFVLTPNSLDYYKSS--ERNALKLGSLVLNSLCSVVPPDEK 73

Query: 88  LNKQ---YAFELSTRTETMYFIADSEKEKEDWINSIGRSI 124
           + K+   + F +  R  + Y     ++E   W+N+I   I
Sbjct: 74  VYKETGYWTFTVHGRKHSYYLYTKLQEEANRWVNAIQEVI 113

MyoX, a MyTH-FERM myosin, is a molecular motor that has crucial functions in the transport and/or tethering of integrins in the actin-based extensions known as filopodia, microtubule binding, and in netrin-mediated axon guidance. It functions as a dimer. MyoX walks on bundles of actin, rather than single filaments, unlike the other unconventional myosins. MyoX is present in organisms ranging from humans to choanoflagellates, but not in Drosophila and Caenorhabditis elegans.MyoX consists of a N-terminal motor/head region, a neck made of 3 IQ motifs, and a tail consisting of a coiled-coil domain, a PEST region, 3 PH domains, a myosin tail homology 4 (MyTH4), and a FERM domain at its very C-terminus. The first PH domain in the MyoX tail is a split-PH domain, interupted by the second PH domain such that PH 1a and PH 1b flanks PH 2. The third PH domain (PH 3) follows the PH 1b domain. This cd contains the third MyoX PH repeat. PLEKHH3/Pleckstrin homology (PH) domain containing, family H (with MyTH4 domain) member 3 is also part of this CD and like MyoX contains a FERM domain, a MyTH4 domain, and a single PH domain. Not much is known about the function of PLEKHH3. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 123

>gnl|CDD|241453 cd13299, PH2_PH_fungal, Fungal proteins Pleckstrin homology (PH) domain, repeat 2

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 12/102 (11%)

Query: 26  NPER---SGWLTKQ-GEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTV 81
           +PER    G+L     + +  W++ W VL+   L ++K+        P  +IP+   + V
Sbjct: 2   DPERVIEQGYLQVLKKKGVNQWKKYWLVLRNRSLSFYKDQ---SEYSPVKIIPIDDIIDV 58

Query: 82  KGAE-DVL--NKQYAFELSTRTETMYFIADSEKEKEDWINSI 120
              E D L  +K++  ++ T  + + F AD E+    W+ ++
Sbjct: 59  --VELDPLSKSKKWCLQIITPEKRIRFCADDEESLIKWLGAL 98

The functions of these fungal proteins are unknown, but they all contain 2 PH domains. This cd represents the second PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 102

>gnl|CDD|241285 cd01254, PH_PLD, Phospholipase D pleckstrin homology (PH) domain

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 8/101 (7%)

Query: 25  SNPERSGWLTK-----QGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCL 79
           S   R GW               W +RWF++K   L +  +       K   V       
Sbjct: 34  SGGHRQGWRVCHFCCCCKSMCSRWSKRWFIVKDSFLAYVDDPDSG---KILDVFLFDKEF 90

Query: 80  TVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSI 120
            V   +     ++  +++  + T+     S ++ ++W+ SI
Sbjct: 91  KVSRGKKETGSRHGLKITNLSRTLKIKCKSYRKAKEWVESI 131

PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 134

>gnl|CDD|241437 cd13283, PH_GPBP, Goodpasture antigen binding protein Pleckstrin homology (PH) domain

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 7/93 (7%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFK-ESTVTRASKPRGVIPVASCLTVKGAEDV 87
             G L+K   YI  W+ R+FVLK G L ++K E         RG I +   +      D 
Sbjct: 1   LRGVLSKWTNYIHGWQDRYFVLKDGTLSYYKSEDETQYGC--RGSISLRKAVIKPHEFDE 58

Query: 88  LNKQYAFELSTRTETMYFIADSEKEKEDWINSI 120
                 F++S      Y  A+S +E++ W++++
Sbjct: 59  CR----FDVSVNDSVWYLRAESPEERQRWVDAL 87

The GPBP (also called Collagen type IV alpha-3-binding protein/hCERT; START domain-containing protein 11/StARD11; StAR-related lipid transfer protein 11) is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen, which is commonly known as the goodpasture antigen. Its splice variant the ceramide transporter (CERT) mediates the cytosolic transport of ceramide. There have been additional splice variants identified, but all of them function as ceramide transport proteins. GPBP and CERT both contain an N-terminal PH domain, followed by a serine rich domain, and a C-terminal START domain. However, GPBP has an additional serine rich domain just upstream of its START domain. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 100

>gnl|CDD|241405 cd13251, PH_ASAP, ArfGAP with SH3 domain, ankyrin repeat and PH domain Pleckstrin homology (PH) domain

 Score = 39.3 bits (92), Expect = 7e-05
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 10/101 (9%)

Query: 28  ERSGWLTKQGEYI--KTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE 85
           E+SG+L K+ E    K W++R   ++ G L           +KP    PV   L     +
Sbjct: 11  EKSGYLLKKSEGKLRKVWQKRRCSIRNGFLTISHSDE----NKP----PVKLNLLTCQVK 62

Query: 86  DVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQ 126
                +  F+L +   T +F A+ E+E E WI+ +  S  +
Sbjct: 63  PNPEDKKCFDLISHNRTYHFQAEDEQEAEAWISVLQNSKEE 103

ASAPs (ASAP1, ASAP2, and ASAP3) function as an Arf-specific GAPs, participates in rhodopsin trafficking, is associated with tumor cell metastasis, modulates phagocytosis, promotes cell proliferation, facilitates vesicle budding, Golgi exocytosis, and regulates vesicle coat assembly via a Bin/Amphiphysin/Rvs domain. ASAPs contain an NH2-terminal BAR domain, a tandem PH domain/GAP domain, three ankyrin repeats, two proline-rich regions, and a COOH-terminal Src homology 3 (SH3) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 108

>gnl|CDD|241388 cd13234, PHsplit_PLC_gamma, Phospholipase C-gamma Split pleckstrin homology (PH) domain

 Score = 39.3 bits (92), Expect = 7e-05
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 41  KTWRRRWFVLKQGKLFWFKESTVT-RASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTR 99
             W   +FVL   K+++ +E+  +   S  RG++ V SC  V   E   ++ + F LS +
Sbjct: 15  HEWTPHYFVLTSNKIYYSEETENSPLGSLLRGILDVPSCHVVIRPEGKNSRPFVFILSPK 74

Query: 100 T---ETMYFIADSEKEKEDWINSIGRSIVQ 126
                ++   AD+++E  DW+  I R I Q
Sbjct: 75  QLSDPSLDVAADTQEELFDWVQKI-REITQ 103

PLC-gamma (PLCgamma) is activated by receptor and non-receptor tyrosine kinases due to the presence of its SH2 and SH3 domains. There are two main isoforms of PLC-gamma expressed in human specimens, PLC-gamma1 and PLC-gamma2. PLC-gamma consists of an N-terminal PH domain, a EF hand domain, a catalytic domain split into X and Y halves internal to which is a PH domain split by two SH2 domains and a single SH3 domain, and a C-terminal C2 domain. The split PH domain is present in this hierarchy. PLCs (EC 3.1.4.3) play a role in the initiation of cellular activation, proliferation, differentiation and apoptosis. They are central to inositol lipid signalling pathways, facilitating intracellular Ca2+ release and protein kinase C (PKC) activation. Specificaly, PLCs catalyze the cleavage of phosphatidylinositol-4,5-bisphosphate (PIP2) and result in the release of 1,2-diacylglycerol (DAG) and inositol 1,4,5-triphosphate (IP3). These products trigger the activation of protein kinase C (PKC) and the release of Ca2+ from intracellular stores. There are fourteen kinds of mammalian phospholipase C proteins which are are classified into six isotypes (beta, gamma, delta, epsilon, zeta, eta). PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 105

>gnl|CDD|241419 cd13265, PH_evt, Evectin Pleckstrin homology (PH) domain

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 10/97 (10%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL 88
           +SGWL +Q   +K W++ WFVL       + E    R  + R  +P   C  ++   +  
Sbjct: 5   KSGWLLRQSTILKRWKKNWFVLYSDGELSYYEDESRRDVEGRINMP-IECRNIRVGLECR 63

Query: 89  N--------KQYAFELSTR-TETMYFIADSEKEKEDW 116
           +        +    ++ TR  + +   A+S  +   W
Sbjct: 64  DVQPPEGRSRDCLLQIVTRDGKRLILCAESADDALAW 100

There are 2 members of the evectin family (also called pleckstrin homology domain containing, family B): evt-1 (also called PLEKHB1) and evt-2 (also called PLEKHB2). evt-1 is specific to the nervous system, where it is expressed in photoreceptors and myelinating glia. evt-2 is widely expressed in both neural and nonneural tissues. Evectins possess a single N-terminal PH domain and a C-terminal hydrophobic region. evt-1 is thought to function as a mediator of post-Golgi trafficking in cells that produce large membrane-rich organelles. It is a candidate gene for the inherited human retinopathy autosomal dominant familial exudative vitreoretinopathy and a susceptibility gene for multiple sclerosis. evt-2 is essential for retrograde endosomal membrane transport from the plasma membrane (PM) to the Golgi. Two membrane trafficking pathways pass through recycling endosomes: a recycling pathway and a retrograde pathway that links the PM to the Golgi/ER. Its PH domain that is unique in that it specifically recognizes phosphatidylserine (PS), but not polyphosphoinositides. PS is an anionic phospholipid class in eukaryotic biomembranes, is highly enriched in the PM, and plays key roles in various physiological processes such as the coagulation cascade, recruitment and activation of signaling molecules, and clearance of apoptotic cells. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 108

>gnl|CDD|241426 cd13272, PH_INPP4A_INPP4B, Type I inositol 3,4-bisphosphate 4-phosphatase and Type II inositol 3,4-bisphosphate 4-phosphatase Pleckstrin homology (PH) domain

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 44  RRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETM 103
           + RWF L+   LF+FK +     S+P GVI + +C   +   D     +AF L  + E  
Sbjct: 16  KERWFKLRGNLLFYFKSNE--PGSEPAGVIVLENCRVQREEPD--PGGFAFSLVFKDEKK 71

Query: 104 Y-FIADSEKEKEDWINSIGRS 123
           Y F   SE+E+++WI +I ++
Sbjct: 72  YRFSCRSEEERDEWIEAIKQA 92

INPP4A (also called Inositol polyphosphate 4-phosphatase type I) and INPP4B (also called Inositol polyphosphate 4-phosphatase type II) both catalyze the hydrolysis of the 4-position phosphate of phosphatidylinositol 3,4-bisphosphate and inositol 1,3,4-trisphosphate. They differ in that INPP4A additionally catalyzes the hydrolysis of the 4-position phosphate of inositol 3,4-bisphosphate, while INPP4B catalyzes the hydrolysis of the 4-position phosphate of inositol 1,4-bisphosphate. They both have a single PH domain followed by a C2 domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 116

>gnl|CDD|241296 cd01265, PH_TBC1D2A, TBC1 domain family member 2A pleckstrin homology (PH) domain

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 12/95 (12%)

Query: 30  SGWLTK--QGEYIKTWRRRWFVLKQGK--LFWFKESTVTRASKPRGVIPVAS-CLTVKGA 84
            G+L K      +KTW+ RWFV  + K  L++++     +   P G I ++    +    
Sbjct: 3   CGYLNKLETKGLLKTWKSRWFVFDERKCQLYYYRSP---QDITPLGSIDLSGAAFSY--- 56

Query: 85  EDVLNKQYAFELSTRTETMYFIADSEKEKEDWINS 119
            D   ++  FE+ T        A   +    W+  
Sbjct: 57  -DPEAEKGTFEIHTPGRVYILKASDRQAMLYWLQE 90

TBC1D2A (also called PARIS-1/Prostate antigen recognized and identified by SEREX 1 and ARMUS) contains a PH domain and a TBC-type GTPase catalytic domain. TBC1D2A integrates signaling between Arf6, Rac1, and Rab7 during junction disassembly. Activated Rac1 recruits TBC1D2A to locally inactivate Rab7 via its C-terminal TBC/RabGAP domain and facilitate E-cadherin degradation in lysosomes. The TBC1D2A PH domain mediates localization at cell-cell contacts and coprecipitates with cadherin complexes. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 101

>gnl|CDD|241448 cd13294, PH_ORP_plant, Plant Oxysterol binding protein related protein Pleckstrin homology (PH) domain

 Score = 36.3 bits (84), Expect = 8e-04
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 7/91 (7%)

Query: 31  GWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASC-LTVKGAEDVLN 89
           G L K   Y K WR RWFVL+ G L ++K         P  V P     L V    +  +
Sbjct: 3   GILYKWVNYGKGWRSRWFVLQDGVLSYYK------VHGPDKVKPSGEVHLKVSSIRESRS 56

Query: 90  KQYAFELSTRTETMYFIADSEKEKEDWINSI 120
               F + T T+T++  A+S +++  W+ ++
Sbjct: 57  DDKKFYIFTGTKTLHLRAESREDRAAWLEAL 87

Plant ORPs contain a N-terminal PH domain and a C-terminal OSBP-related domain. Not much is known about its specific function in plants to date. Members here include: Arabidopsis, spruce, and petunia. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. In general OSBPs and ORPs have been found to be involved in the transport and metabolism of cholesterol and related lipids in eukaryotes. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 100

>gnl|CDD|241406 cd13252, PH1_ADAP, ArfGAP with dual PH domains Pleckstrin homology (PH) domain, repeat 1

 Score = 36.4 bits (85), Expect = 9e-04
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 10/98 (10%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQ--GKLFWFKESTVTRASKPRGVIPVASCLTVKGAED 86
           + G+L K+G+    +++R FVL +  G L +F +     A +P+ VI +   L      +
Sbjct: 13  KEGFLWKRGKDNNQFKQRKFVLSEREGTLKYFVKED---AKEPKAVISI-KELNAVFQPE 68

Query: 87  VLNK----QYAFELSTRTETMYFIADSEKEKEDWINSI 120
            +      Q  +     T  ++   +  KE  DW N+I
Sbjct: 69  KIGHPNGLQITYLKDGSTRNIFVYHEDGKEIVDWYNAI 106

ADAP (also called centaurin alpha) is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. This cd contains the first PH domain repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 125

>gnl|CDD|241294 cd01263, PH_anillin, Anillin Pleckstrin homology (PH) domain

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 22/102 (21%)

Query: 43  WRRRWFVLKQGKLFWFK----ESTVTRASKPRGVIPVASCLTVK---GAEDVLNKQYAFE 95
           W RRW VL+ G L ++K    E       KP G I +  C+  K    + ++  +   FE
Sbjct: 20  WHRRWCVLRGGYLSFWKYPEDEEK----KKPIGSIDLRKCINEKVEPASRELCARPNTFE 75

Query: 96  LSTR-----------TETMYFIADSEKEKEDWINSIGRSIVQ 126
           L T             + +   AD+++E+ +W++++ +++  
Sbjct: 76  LETLRPAEDSDGTNEKKRVLLSADTKEERIEWLDALNQTLAD 117

Anillin (Rhotekin/RTKN; also called PLEKHK/Pleckstrin homology domain-containing family K) is an actin binding protein involved in cytokinesis. It interacts with GTP-bound Rho proteins and results in the inhibition of their GTPase activity. Dysregulation of the Rho signal transduction pathway has been implicated in many forms of cancer. Anillin proteins have a N-terminal HRI domain/ACC (anti-parallel coiled-coil) finger domain or Rho-binding domain binds small GTPases from the Rho family. The C-terminal PH domain helps target anillin to ectopic septin containing foci. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 119

>gnl|CDD|241412 cd13258, PH_PLEKHJ1, Pleckstrin homology domain containing, family J member 1 Pleckstrin homology (PH) domain

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 10/111 (9%)

Query: 27  PERSGWL----TKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVK 82
            E  G L     K+G  +K  R  W  L    LF+FK   +    +P G + +  C  V+
Sbjct: 16  AEMEGELLMRGPKKGSVLK-KRLFWVRLVVNFLFYFKTDEMFDELEPIGALLLERCRVVQ 74

Query: 83  GAEDVLNKQYAFELSTRTET---MYFIADSEKEKEDWINSIGRSIVQHSRS 130
             E+   K + F +S   E     YF   SE++  +W+ ++ ++  +  R 
Sbjct: 75  --EEPPAKSFVFSISFIDEPERKYYFECRSEEQCVEWVEALRQASYEFMRR 123

PLEKHJ1 (also called GNRPX2/Guanine nucleotide-releasing protein x ). It contains a single PH domain. Very little information is known about PLEKHJ1. PLEKHJ1 has been shown to interact with IKBKG (inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma) and KRT33B (keratin 33B). PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 144

>gnl|CDD|241391 cd13237, PH2_FGD5_FGD6, FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins 5 and 6 pleckstrin homology (PH) domain, C-terminus

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 30 SGWLTKQGEYIKTWRRRWFVLKQGKLFWFKES 61
          SG+L ++    K+W+R WFVLK   L+ +K S
Sbjct: 2  SGYLYRRKRKKKSWKRLWFVLKDKVLYTYKAS 33

FGD5 regulates promotes angiogenesis of vascular endothelial growth factor (VEGF) in vascular endothelial cells, including network formation, permeability, directional movement, and proliferation. The specific function of FGD6 is unknown. In general, FGDs have a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. All FGDs are guanine nucleotide exchange factors that activate the Rho GTPase Cdc42, an important regulator of membrane trafficking. The RhoGEF domain is responsible for GEF catalytic activity, while the PH domain is involved in intracellular targeting of the DH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 90

>gnl|CDD|241387 cd13233, PH_ARHGAP9-like, Beta-spectrin pleckstrin homology (PH) domain

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 7/90 (7%)

Query: 41  KTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA-----EDVLNKQYAFE 95
           K W   W VL    L ++K+     AS      P  S + ++GA     ++  +++  F+
Sbjct: 20  KNWSTSWVVLTGSHLLFYKDQKSAAASGGPQSKP-ESSVDLRGASIEWAKEKSSRKNVFQ 78

Query: 96  LSTRTETMYFI-ADSEKEKEDWINSIGRSI 124
           LST T T Y + +D++ E ++W ++I R I
Sbjct: 79  LSTVTGTEYLLQSDNDTEIQEWFDAIKRVI 108

ARHGAP family genes encode Rho/Rac/Cdc42-like GTPase activating proteins with RhoGAP domain. The ARHGAP members here all have a PH domain upstream of their C-terminal RhoGAP domain. Some have additional N-terminal SH3 and WW domains. The members here include: ARHGAP9, ARHGAP12, ARHGAP15, and ARHGAP27. ARHGAP27 and ARHGAP12 shared the common-domain structure, consisting of SH3, WW, PH, and RhoGAP domains. The PH domain of ArhGAP9 employs a non-canonical phosphoinositide binding mechanism, a variation of the spectrin- Ins(4,5)P2-binding mode, that gives rise to a unique PI binding profile, namely a preference for both PI(4,5)P2 and the PI 3-kinase products PI(3,4,5)P3 and PI(3,4)P2. This lipid binding mechanism is also employed by the PH domain of Tiam1 and Slm1. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|241269 cd01236, PH_RIP, Rho-Interacting Protein Pleckstrin homology (PH) domain

 Score = 35.5 bits (82), Expect = 0.002
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 7/81 (8%)

Query: 41  KTWRRRWFVL-KQGKL-FWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELST 98
           K W+RRWFVL   G+L +   E+  T    P+G I ++ C  V  AE +    ++  ++T
Sbjct: 52  KRWQRRWFVLYDDGELRYALDENPDT---LPQGSIDMSKCTEVTDAEAITGHPHSLAITT 108

Query: 99  RTETMYFI-ADSEKEKEDWIN 118
             E ++FI ADS+++   W+ 
Sbjct: 109 P-ERIHFIKADSKEDIRWWLE 128

RIP1-RhoGDI2 was obtained in a screen for proteins that bind to wild-type RhoA. RIP2, RIP3, and RIP4 were isolated from cDNA libraries with constitutively active V14RhoA (containing the C190R mutation). RIP2 represents a novel GDP/GTP exchange factor (RhoGEF), while RIP3 (p116Rip) and RIP4 are thought to be structural proteins. RhoGEF contains a Dbl(DH)/PH region, a a zinc finger motif, a leucine-rich domain, and a coiled-coil region. The last 2 domains are thought to be involved in mediating protein-protein interactions. RIP3 is a negative regulator of RhoA signaling that inhibits, either directly or indirectly, RhoA-stimulated actomyosin contractility. In plants RIP3 is localized at microtubules and interacts with the kinesin-13 family member AtKinesin-13A, suggesting a role for RIP3 in microtubule reorganization and a possible function in Rho proteins of plants (ROP)-regulated polar growth. It has a PH domain, two proline-rich regions which are putative binding sites for SH3 domains, and a COOH-terminal coiled-coil region which overlaps with the RhoA-binding region. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 136

>gnl|CDD|241444 cd13290, PH_ORP9, Human Oxysterol binding protein related protein 9 Pleckstrin homology (PH) domain

 Score = 34.7 bits (80), Expect = 0.003
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 18/106 (16%)

Query: 31  GWLTKQGEYIKTWRRRWFVLKQ--GKLFWFKESTVTRASKPRGVIPVASCLTVKGA---- 84
           G L+K    +K W+ RWFVL    G L ++     ++    RG      C+ +KGA    
Sbjct: 3   GPLSKWTNVMKGWQYRWFVLDDNAGLLSYY----TSKEKMMRGS--RRGCVRLKGAVIGI 56

Query: 85  --EDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHS 128
             ED       F ++   +T +F A   +E+E WI ++  +I++HS
Sbjct: 57  DDED----DSTFTITVDQKTFHFQARDAEERERWIRALEDTILRHS 98

Human ORP9 is proposed to function in regulation of Akt phosphorylation. ORP9 has 2 forms, a long (ORP9L) and a short (ORP9S). ORP9L contains an N-terminal PH domain, a FFAT motif (two phenylalanines in an acidic tract), and a C-terminal OSBP-related domain. ORP1S is truncated and contains a FFAT motif and an OSBP-related domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. In general OSBPs and ORPs have been found to be involved in the transport and metabolism of cholesterol and related lipids in eukaryotes. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. They are members of the oxysterol binding protein (OSBP) family which includes OSBP, OSBP-related proteins (ORP), Goodpasture antigen binding protein (GPBP), and Four phosphate adaptor protein 1 (FAPP1). They have a wide range of purported functions including sterol transport, cell cycle control, pollen development and vessicle transport from Golgi recognize both PI lipids and ARF proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	99.91
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	99.91
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	99.9
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	99.89
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	99.89
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	99.88
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	99.88
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	99.88
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	99.87
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	99.86
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	99.86
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	99.86
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	99.84
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	99.83
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	99.82
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	99.81
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	99.81
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	99.78
cd01263	122	PH_anillin Anillin Pleckstrin homology (PH) domain	99.76
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	99.74
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	99.72
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	99.7
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	99.68
KOG0930	395	consensus Guanine nucleotide exchange factor Cytoh	99.67
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	99.66
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	99.66
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	99.64
PF15409	89	PH_8: Pleckstrin homology domain	99.63
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	99.63
cd01256	110	PH_dynamin Dynamin pleckstrin homology (PH) domain	99.6
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	99.6
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	99.52
cd01234	117	PH_CADPS CADPS (Ca2+-dependent activator protein)	99.52
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	99.5
cd01218	104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	99.44
cd01242	112	PH_ROK Rok (Rho- associated kinase) pleckstrin hom	99.34
KOG3723	851	consensus PH domain protein Melted [Signal transdu	99.25
cd01259	114	PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor pr	99.23
cd01243	122	PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin	99.23
cd01261	112	PH_SOS Son of Sevenless (SOS) Pleckstrin homology	99.22
PF14593	104	PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.	99.2
cd01239	117	PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin hom	99.17
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.15
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.15
KOG1090	1732	consensus Predicted dual-specificity phosphatase [	99.12
KOG3640	1116	consensus Actin binding protein Anillin [Cell cycl	99.11
cd01249	104	PH_oligophrenin Oligophrenin Pleckstrin homology (	99.09
PLN00188	719	enhanced disease resistance protein (EDR2); Provis	99.0
cd01258	108	PH_syntrophin Syntrophin pleckstrin homology (PH)	98.94
cd01240	116	PH_beta-ARK Beta adrenergic receptor kinase 1(beta	98.83
cd01222	97	PH_clg Clg (common-site lymphoma/leukemia guanine	98.73
cd01224	109	PH_Collybistin Collybistin pleckstrin homology (PH	98.71
cd01225	111	PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-	98.71
cd01262	89	PH_PDK1 3-Phosphoinositide dependent protein kinas	98.71
PTZ00267	478	NIMA-related protein kinase; Provisional	98.7
KOG0932	774	consensus Guanine nucleotide exchange factor EFA6	98.68
KOG3751	622	consensus Growth factor receptor-bound proteins (G	98.66
cd01226	100	PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin	98.63
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.58
PLN02866	1068	phospholipase D	98.57
KOG4424	623	consensus Predicted Rho/Rac guanine nucleotide exc	98.49
PF12814	123	Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin	98.47
KOG3543	1218	consensus Ca2+-dependent activator protein [Signal	98.44
KOG0248	936	consensus Cytoplasmic protein Max-1, contains PH,	98.21
cd01221	125	PH_ephexin Ephexin Pleckstrin homology (PH) domain	98.15
KOG3531	1036	consensus Rho guanine nucleotide exchange factor C	98.12
cd01223	116	PH_Vav Vav pleckstrin homology (PH) domain. Vav pl	98.0
KOG3549	505	consensus Syntrophins (type gamma) [Extracellular	97.98
cd01232	114	PH_TRIO Trio pleckstrin homology (PH) domain. Trio	97.97
PTZ00283	496	serine/threonine protein kinase; Provisional	97.94
PF15406	112	PH_6: Pleckstrin homology domain	97.86
cd01231	107	PH_Lnk LNK-family Pleckstrin homology (PH) domain.	97.84
KOG1739	611	consensus Serine/threonine protein kinase GPBP [Si	97.78
cd01228	96	PH_BCR-related BCR (breakpoint cluster region)-rel	97.77
KOG1451	812	consensus Oligophrenin-1 and related Rho GTPase-ac	97.68
KOG1117	1186	consensus Rho- and Arf-GTPase activating protein A	97.64
PF15408	104	PH_7: Pleckstrin homology domain	97.64
KOG1117	1186	consensus Rho- and Arf-GTPase activating protein A	97.63
PF15404	185	PH_4: Pleckstrin homology domain	97.37
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	96.71
PF15405	135	PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.	96.61
KOG4807	593	consensus F-actin binding protein, regulates actin	96.59
KOG3727	664	consensus Mitogen inducible gene product (contains	96.42
KOG3551	506	consensus Syntrophins (type beta) [Extracellular s	96.34
cd01227	133	PH_Dbs Dbs (DBL's big sister) pleckstrin homology	96.3
cd01248	115	PH_PLC Phospholipase C (PLC) pleckstrin homology (	96.2
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	96.19
PF15411	116	PH_10: Pleckstrin homology domain	96.13
KOG2070	661	consensus Guanine nucleotide exchange factor [Nucl	95.63
KOG3531	1036	consensus Rho guanine nucleotide exchange factor C	94.92
KOG1738	638	consensus Membrane-associated guanylate kinase-int	94.85
cd01255	160	PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM	94.79
KOG4407	1973	consensus Predicted Rho GTPase-activating protein	94.79
KOG4424	623	consensus Predicted Rho/Rac guanine nucleotide exc	94.7
KOG3523	695	consensus Putative guanine nucleotide exchange fac	94.66
KOG1737	799	consensus Oxysterol-binding protein [Lipid transpo	94.64
PF08458	110	PH_2: Plant pleckstrin homology-like region; Inter	94.47
KOG0248	936	consensus Cytoplasmic protein Max-1, contains PH,	93.22
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	92.35
KOG4047	429	consensus Docking protein 1 (p62dok) [Signal trans	90.59
KOG3551	506	consensus Syntrophins (type beta) [Extracellular s	90.58
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	90.54
KOG2996	865	consensus Rho guanine nucleotide exchange factor V	88.82
KOG1170	1099	consensus Diacylglycerol kinase [Lipid transport a	88.72
KOG0517	2473	consensus Beta-spectrin [Cytoskeleton]	86.79

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=99.91  E-value=1.7e-23  Score=128.30  Aligned_cols=95  Identities=24%  Similarity=0.424  Sum_probs=80.3

Q ss_pred             ceEEEEEEeCC---CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccC---CCcceEEEEeCCe
Q 032301           28 ERSGWLTKQGE---YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL---NKQYAFELSTRTE  101 (143)
Q Consensus        28 ~~~G~L~k~~~---~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~---~~~~~f~i~~~~~  101 (143)
                      +.+|||.++++   ..+.|++|||+|+++.|+||+....  ...+.++|+|+.|..|....+..   ..+++|.|.++++
T Consensus         1 ~~~G~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~--~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~r   78 (101)
T cd01264           1 LIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSK--DDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADK   78 (101)
T ss_pred             CcceEEeecCccceeeecceeEEEEEeCCEEEEEeccCc--cCCCCceEEcccceEEeeccccccccccCcEEEEEcCCc
Confidence            36899999987   7899999999999999999998752  12234999999999887765322   3469999999999


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHH
Q 032301          102 TMYFIADSEKEKEDWINSIGRSI  124 (143)
Q Consensus       102 ~~~~~a~s~~e~~~W~~al~~~~  124 (143)
                      +|+|+|+|++++++|+++|+.|+
T Consensus        79 t~~l~A~se~e~e~WI~~i~~a~  101 (101)
T cd01264          79 TYILKAKDEKNAEEWLQCLNIAV  101 (101)
T ss_pred             eEEEEeCCHHHHHHHHHHHHhhC
Confidence            99999999999999999998763

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=99.91  E-value=5.1e-23  Score=127.37  Aligned_cols=95  Identities=24%  Similarity=0.440  Sum_probs=81.0

Q ss_pred             CceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCccc---CCCcceEEEEeCCeEE
Q 032301           27 PERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDV---LNKQYAFELSTRTETM  103 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~---~~~~~~f~i~~~~~~~  103 (143)
                      ++++|||.++++..+.|++|||||+++.|.||+++.   +..+.+.|+|..+.+ ...++.   .+++++|.|.++++++
T Consensus         2 v~k~G~L~Kkg~~~k~WkkRwfvL~~~~L~yyk~~~---~~~~~~~I~L~~~~v-~~~~~~~~~~~~~~~F~I~t~~rt~   77 (100)
T cd01233           2 VSKKGYLNFPEETNSGWTRRFVVVRRPYLHIYRSDK---DPVERGVINLSTARV-EHSEDQAAMVKGPNTFAVCTKHRGY   77 (100)
T ss_pred             cceeEEEEeeCCCCCCcEEEEEEEECCEEEEEccCC---CccEeeEEEecccEE-EEccchhhhcCCCcEEEEECCCCEE
Confidence            578999999998889999999999999999999987   567899999997643 333321   2468999999999999


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHH
Q 032301          104 YFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus       104 ~~~a~s~~e~~~W~~al~~~~~  125 (143)
                      +|+|+|++|+.+|+.||+....
T Consensus        78 ~~~A~s~~e~~~Wi~ai~~~~~   99 (100)
T cd01233          78 LFQALSDKEMIDWLYALNPLYA   99 (100)
T ss_pred             EEEcCCHHHHHHHHHHhhhhhc
Confidence            9999999999999999976543

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=99.90  E-value=7.1e-23  Score=127.25  Aligned_cols=95  Identities=21%  Similarity=0.531  Sum_probs=77.5

Q ss_pred             eEEEEEEeCCC-CCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceE----EeecCcc-cCC-CcceEEEEeCCe
Q 032301           29 RSGWLTKQGEY-IKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCL----TVKGAED-VLN-KQYAFELSTRTE  101 (143)
Q Consensus        29 ~~G~L~k~~~~-~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~----~v~~~~~-~~~-~~~~f~i~~~~~  101 (143)
                      ++|||.|+++. .+.|++|||||.++.|+||+++.   +..|.+.|+|..+.    +....++ ... ..++|.|.++++
T Consensus         1 KeG~L~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~---d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~R   77 (103)
T cd01251           1 KEGFMEKTGPKHTEGFKKRWFTLDDRRLMYFKDPL---DAFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPER   77 (103)
T ss_pred             CceeEEecCCCCCCCceeEEEEEeCCEEEEECCCC---CcCcCcEEEeeccccceeEeccCCccccccccceEEEEeCCe
Confidence            58999999875 58999999999999999999987   55799999997543    2222121 122 235999999999


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301          102 TMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus       102 ~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      +|+|+|+|++|+.+|+.||+.++..
T Consensus        78 ty~l~a~s~~e~~~Wi~ai~~v~~~  102 (103)
T cd01251          78 KFLFACETEQDRREWIAAFQNVLSR  102 (103)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999998863

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=99.89  E-value=1.9e-22  Score=123.99  Aligned_cols=90  Identities=30%  Similarity=0.688  Sum_probs=77.0

Q ss_pred             eEEEEEEeCCCCC----CceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC-eEE
Q 032301           29 RSGWLTKQGEYIK----TWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT-ETM  103 (143)
Q Consensus        29 ~~G~L~k~~~~~~----~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~-~~~  103 (143)
                      .+|||.+++...+    .|++|||||.++.|+||+++.   +..+.+.|+|+++++....+  ..++++|.|.+++ +++
T Consensus         2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~---~~~~~~~I~L~~~~v~~~~~--~~k~~~F~I~~~~~~~~   76 (96)
T cd01260           2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQ---DEKAEGLIFLSGFTIESAKE--VKKKYAFKVCHPVYKSF   76 (96)
T ss_pred             ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCC---CCccceEEEccCCEEEEchh--cCCceEEEECCCCCcEE
Confidence            5899999965444    999999999999999999997   56689999999985543322  2578999999998 999


Q ss_pred             EEEcCCHHHHHHHHHHHHHH
Q 032301          104 YFIADSEKEKEDWINSIGRS  123 (143)
Q Consensus       104 ~~~a~s~~e~~~W~~al~~~  123 (143)
                      +|+|+|++++.+|+.||+.|
T Consensus        77 ~f~a~s~~e~~~Wi~ai~~~   96 (96)
T cd01260          77 YFAAETLDDLSQWVNHLITA   96 (96)
T ss_pred             EEEeCCHHHHHHHHHHHHhC
Confidence            99999999999999999764

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=99.89  E-value=4.7e-22  Score=124.20  Aligned_cols=94  Identities=20%  Similarity=0.386  Sum_probs=77.9

Q ss_pred             ceEEEEEEeCCCC-----CCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccC------CCcceEEE
Q 032301           28 ERSGWLTKQGEYI-----KTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL------NKQYAFEL   96 (143)
Q Consensus        28 ~~~G~L~k~~~~~-----~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~------~~~~~f~i   96 (143)
                      +++|+|.|++...     +.|++|||||+++.|+||+++... ...+.|.|+|..+..++...+..      .+.++|+|
T Consensus         1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~-~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i   79 (106)
T cd01238           1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEK-RGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQV   79 (106)
T ss_pred             CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCccc-ccCcceeEECCcceEEEEecCCcCcccccccCccEEE
Confidence            5789999996432     499999999999999999987632 24689999999987776544322      35789999


Q ss_pred             EeCCeEEEEEcCCHHHHHHHHHHHHH
Q 032301           97 STRTETMYFIADSEKEKEDWINSIGR  122 (143)
Q Consensus        97 ~~~~~~~~~~a~s~~e~~~W~~al~~  122 (143)
                      .++++++|+.|+|++|+++|+.||+.
T Consensus        80 ~t~~r~~yl~A~s~~er~~WI~ai~~  105 (106)
T cd01238          80 VHDEGTLYVFAPTEELRKRWIKALKQ  105 (106)
T ss_pred             EeCCCeEEEEcCCHHHHHHHHHHHHh
Confidence            99999999999999999999999975

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=99.88  E-value=9.6e-22  Score=121.13  Aligned_cols=92  Identities=29%  Similarity=0.590  Sum_probs=78.4

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECC------eEEEEecCCCC--CCCCcceEEeCCceEEeecCcccCCCcceEEEE
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQG------KLFWFKESTVT--RASKPRGVIPVASCLTVKGAEDVLNKQYAFELS   97 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~------~l~~~~~~~~~--~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~   97 (143)
                      +++++|||.|+    +.|++|||||++.      .|.||+++..-  ....|.++|+|+.|..+...++ ..++++|.|.
T Consensus         1 ~v~k~GyL~K~----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d-~k~~~~f~i~   75 (101)
T cd01257           1 DVRKSGYLRKQ----KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRAD-AKHRHLIALY   75 (101)
T ss_pred             CccEEEEEeEe----cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccc-cccCeEEEEE
Confidence            47899999997    6999999999977      79999998621  1256999999999988865544 2457999999


Q ss_pred             eCCeEEEEEcCCHHHHHHHHHHHHH
Q 032301           98 TRTETMYFIADSEKEKEDWINSIGR  122 (143)
Q Consensus        98 ~~~~~~~~~a~s~~e~~~W~~al~~  122 (143)
                      +++++++|.|+|++|+++|+.+|..
T Consensus        76 t~dr~f~l~aese~E~~~Wi~~i~~  100 (101)
T cd01257          76 TRDEYFAVAAENEAEQDSWYQALLE  100 (101)
T ss_pred             eCCceEEEEeCCHHHHHHHHHHHhh
Confidence            9999999999999999999999853

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=99.88  E-value=7.2e-22  Score=121.06  Aligned_cols=89  Identities=24%  Similarity=0.501  Sum_probs=75.2

Q ss_pred             eEEEEEEeCC--CCCCceeEEEEEEC--CeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEE
Q 032301           29 RSGWLTKQGE--YIKTWRRRWFVLKQ--GKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMY  104 (143)
Q Consensus        29 ~~G~L~k~~~--~~~~w~~r~~vL~~--~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~  104 (143)
                      ++|||.|+++  ..+.|++|||||.+  ..|+||+++.   +..|.+.|+|.++..+....   ..++.|.|.+++++|+
T Consensus         1 l~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~---d~~p~G~I~L~~~~~~~~~~---~~~~~F~i~t~~r~y~   74 (95)
T cd01265           1 LCGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQ---DAKPLGRVDLSGAAFTYDPR---EEKGRFEIHSNNEVIA   74 (95)
T ss_pred             CcccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCC---cccccceEECCccEEEcCCC---CCCCEEEEEcCCcEEE
Confidence            3799999975  36899999999984  5799999987   56799999999975543322   2478999999999999


Q ss_pred             EEcCCHHHHHHHHHHHHHH
Q 032301          105 FIADSEKEKEDWINSIGRS  123 (143)
Q Consensus       105 ~~a~s~~e~~~W~~al~~~  123 (143)
                      |+|+|++|+++|+.||+.+
T Consensus        75 l~A~s~~e~~~Wi~al~~~   93 (95)
T cd01265          75 LKASSDKQMNYWLQALQSK   93 (95)
T ss_pred             EECCCHHHHHHHHHHHHhh
Confidence            9999999999999999875

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=99.88  E-value=1.3e-21  Score=120.93  Aligned_cols=91  Identities=26%  Similarity=0.557  Sum_probs=74.4

Q ss_pred             eEEEEEEeCC---------CCCCceeEEEEEEC-CeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEe
Q 032301           29 RSGWLTKQGE---------YIKTWRRRWFVLKQ-GKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELST   98 (143)
Q Consensus        29 ~~G~L~k~~~---------~~~~w~~r~~vL~~-~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~   98 (143)
                      ++|||.+.+.         ..+.|++|||||.+ ..|+||++...  ...|.++|+|+.|..|....+...+.++|.|.+
T Consensus         1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~--~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~t   78 (104)
T cd01236           1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMP--TTLPQGTIDMNQCTDVVDAEARTGQKFSICILT   78 (104)
T ss_pred             CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCC--CcccceEEEccceEEEeecccccCCccEEEEEC
Confidence            4799999853         24789999999985 56666655432  346899999999988876665556679999999


Q ss_pred             CCeEEEEEcCCHHHHHHHHHHHH
Q 032301           99 RTETMYFIADSEKEKEDWINSIG  121 (143)
Q Consensus        99 ~~~~~~~~a~s~~e~~~W~~al~  121 (143)
                      ++++|||.|+|++|+++|+.+|.
T Consensus        79 p~R~f~l~Aete~E~~~Wi~~l~  101 (104)
T cd01236          79 PDKEHFIKAETKEEISWWLNMLM  101 (104)
T ss_pred             CCceEEEEeCCHHHHHHHHHHHH
Confidence            99999999999999999999985

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=99.87  E-value=4.2e-21  Score=119.02  Aligned_cols=92  Identities=29%  Similarity=0.589  Sum_probs=77.4

Q ss_pred             EEEEEEeCCCCCCceeEEEEEEC--CeEEEEecCCCCCCCCcceEEeCCceEEeecCcc------cCCCcceEEEEeCCe
Q 032301           30 SGWLTKQGEYIKTWRRRWFVLKQ--GKLFWFKESTVTRASKPRGVIPVASCLTVKGAED------VLNKQYAFELSTRTE  101 (143)
Q Consensus        30 ~G~L~k~~~~~~~w~~r~~vL~~--~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~------~~~~~~~f~i~~~~~  101 (143)
                      +|||.|++...+.|++|||||.+  ..|.||+++.   ...|.+.|+|..++.+.....      .....+.|.|.++.+
T Consensus         2 ~G~L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~---~~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~~r   78 (101)
T cd01235           2 EGYLYKRGALLKGWKPRWFVLDPDKHQLRYYDDFE---DTAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTSKR   78 (101)
T ss_pred             eEEEEEcCCCCCCccceEEEEECCCCEEEEecCCC---CCccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeCCc
Confidence            79999999888999999999994  4899999887   567999999998776654221      113457799999999


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHH
Q 032301          102 TMYFIADSEKEKEDWINSIGRSI  124 (143)
Q Consensus       102 ~~~~~a~s~~e~~~W~~al~~~~  124 (143)
                      +++|+|+|.+++.+|+.||+.++
T Consensus        79 ~~~~~a~s~~e~~~Wi~ai~~~i  101 (101)
T cd01235          79 TYNFLAENINEAQRWKEKIQQCI  101 (101)
T ss_pred             eEEEECCCHHHHHHHHHHHHhhC
Confidence            99999999999999999998764

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=99.86  E-value=1.1e-20  Score=114.71  Aligned_cols=89  Identities=28%  Similarity=0.543  Sum_probs=75.5

Q ss_pred             eEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC-eEEEEEc
Q 032301           29 RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT-ETMYFIA  107 (143)
Q Consensus        29 ~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~-~~~~~~a  107 (143)
                      ++|||.|.+...+.|++|||||.++.|.||+++... ...|.+.|+|..|..+.. +   .+++.|.|.+.. ++++|.|
T Consensus         1 ~~G~L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~-~~~~~G~I~L~~~~i~~~-~---~~~~~F~i~~~~~r~~~L~A   75 (91)
T cd01247           1 TNGVLSKWTNYINGWQDRYFVLKEGNLSYYKSEAEK-SHGCRGSIFLKKAIIAAH-E---FDENRFDISVNENVVWYLRA   75 (91)
T ss_pred             CceEEEEeccccCCCceEEEEEECCEEEEEecCccC-cCCCcEEEECcccEEEcC-C---CCCCEEEEEeCCCeEEEEEe
Confidence            479999999999999999999999999999998743 235899999999755432 2   346899997666 9999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 032301          108 DSEKEKEDWINSIGR  122 (143)
Q Consensus       108 ~s~~e~~~W~~al~~  122 (143)
                      +|++|+++|+.||+.
T Consensus        76 ~s~~e~~~Wi~al~~   90 (91)
T cd01247          76 ENSQSRLLWMDSVVR   90 (91)
T ss_pred             CCHHHHHHHHHHHhh
Confidence            999999999999974

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=99.86  E-value=1.6e-20  Score=120.66  Aligned_cols=96  Identities=39%  Similarity=0.802  Sum_probs=80.1

Q ss_pred             ceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC-------
Q 032301           28 ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT-------  100 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~-------  100 (143)
                      .++|||.|+++..+.|++|||||.++.|.||+++.   ...+.+.|+|.++.+.. .++ ..++++|.|.+++       
T Consensus         1 ~k~G~L~K~~~~~~~WkkRwfvL~~~~L~yyk~~~---~~~~~g~I~L~~~~v~~-~~~-~~~~~~F~i~~~~~~~~i~~   75 (125)
T cd01252           1 DREGWLLKQGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLENVSIRE-VED-PSKPFCFELFSPSDKQQIKA   75 (125)
T ss_pred             CcEEEEEEeCCCCCCeEeEEEEEECCEEEEEcCCC---CCCceEEEECCCcEEEE-ccc-CCCCeeEEEECCcccccccc
Confidence            36899999998889999999999999999999987   56799999999875433 322 3578899988755       


Q ss_pred             --------------eEEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301          101 --------------ETMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus       101 --------------~~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                                    +.|+|+|+|.+|+.+|+.||+.++....
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~~  117 (125)
T cd01252          76 CKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPNP  117 (125)
T ss_pred             ccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCc
Confidence                          4678999999999999999999987443

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=99.86  E-value=1.1e-20  Score=118.54  Aligned_cols=91  Identities=33%  Similarity=0.583  Sum_probs=74.8

Q ss_pred             EEEEEEeCC----CCCCceeEEEEEECCe-------EEEEecCCCCCCCCcceEEeCCceEEeecCc----ccCCCcceE
Q 032301           30 SGWLTKQGE----YIKTWRRRWFVLKQGK-------LFWFKESTVTRASKPRGVIPVASCLTVKGAE----DVLNKQYAF   94 (143)
Q Consensus        30 ~G~L~k~~~----~~~~w~~r~~vL~~~~-------l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~----~~~~~~~~f   94 (143)
                      +|||.|+++    ..+.|++|||||.+..       |.||+++.   ...|.++|+|+.+..++...    ......+.|
T Consensus         2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~---~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f   78 (108)
T cd01266           2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSR---KFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGF   78 (108)
T ss_pred             ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCC---CCccceEEECCccEEEcccccccccCcccceEE
Confidence            799999976    3459999999999876       59999887   56799999999987664421    112335789


Q ss_pred             EEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 032301           95 ELSTRTETMYFIADSEKEKEDWINSIGRS  123 (143)
Q Consensus        95 ~i~~~~~~~~~~a~s~~e~~~W~~al~~~  123 (143)
                      .|.++.++|+|.|+|++|+++|+.+|+..
T Consensus        79 ~i~t~~r~y~l~A~s~ee~~~Wi~~I~~~  107 (108)
T cd01266          79 DIETIVRDLYLVAKNEEEMTLWVNCICKL  107 (108)
T ss_pred             EEEeCCccEEEEECCHHHHHHHHHHHHhh
Confidence            99999999999999999999999999764

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=99.84  E-value=1.4e-19  Score=109.95  Aligned_cols=90  Identities=31%  Similarity=0.718  Sum_probs=76.1

Q ss_pred             eEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC-eEEEEEc
Q 032301           29 RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT-ETMYFIA  107 (143)
Q Consensus        29 ~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~-~~~~~~a  107 (143)
                      ++|||.++++..+.|++|||+|.++.|.||+++... ...+.+.+.|.++.... .+   ..+++|.|.+++ +.++|+|
T Consensus         1 ~~G~L~k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~-~~~~~~~i~l~~~~~~~-~~---~~~~~F~i~~~~~~~~~~~a   75 (91)
T cd01246           1 VEGWLLKWTNYLKGWQKRWFVLDNGLLSYYKNKSSM-RGKPRGTILLSGAVISE-DD---SDDKCFTIDTGGDKTLHLRA   75 (91)
T ss_pred             CeEEEEEecccCCCceeeEEEEECCEEEEEecCccC-CCCceEEEEeceEEEEE-CC---CCCcEEEEEcCCCCEEEEEC
Confidence            589999998777899999999999999999999732 12689999999975332 21   347999999988 9999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 032301          108 DSEKEKEDWINSIGRS  123 (143)
Q Consensus       108 ~s~~e~~~W~~al~~~  123 (143)
                      +|.+|+.+|+.||+.|
T Consensus        76 ~s~~e~~~Wi~al~~a   91 (91)
T cd01246          76 NSEEERQRWVDALELA   91 (91)
T ss_pred             CCHHHHHHHHHHHHhC
Confidence            9999999999999764

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=99.83  E-value=1.7e-19  Score=110.17  Aligned_cols=92  Identities=33%  Similarity=0.637  Sum_probs=76.0

Q ss_pred             eEEEEEEeCCC-CCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEEEEc
Q 032301           29 RSGWLTKQGEY-IKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIA  107 (143)
Q Consensus        29 ~~G~L~k~~~~-~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~a  107 (143)
                      ++|||.++++. .+.|++|||+|.++.|.||+++... ...+.+.|+|..+. +...+....++++|.|.+++++++|+|
T Consensus         1 k~G~L~kk~~~~~~~W~kr~~~L~~~~l~~y~~~~~~-~~~~~~~i~l~~~~-v~~~~~~~~~~~~f~i~~~~~~~~f~a   78 (94)
T cd01250           1 KQGYLYKRSSKSNKEWKKRWFVLKNGQLTYHHRLKDY-DNAHVKEIDLRRCT-VRHNGKQPDRRFCFEVISPTKTWHFQA   78 (94)
T ss_pred             CcceEEEECCCcCCCceEEEEEEeCCeEEEEcCCccc-ccccceEEeccceE-EecCccccCCceEEEEEcCCcEEEEEC
Confidence            57999998754 6899999999999999999988732 24577889998864 444433324789999999999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q 032301          108 DSEKEKEDWINSIGR  122 (143)
Q Consensus       108 ~s~~e~~~W~~al~~  122 (143)
                      +|.+++.+|+.||+.
T Consensus        79 ~s~~~~~~Wi~al~~   93 (94)
T cd01250          79 DSEEERDDWISAIQE   93 (94)
T ss_pred             CCHHHHHHHHHHHhc
Confidence            999999999999974

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=99.82  E-value=1.1e-18  Score=107.67  Aligned_cols=98  Identities=33%  Similarity=0.692  Sum_probs=83.5

Q ss_pred             CceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcc----cCCCcceEEEEeCCe-
Q 032301           27 PERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAED----VLNKQYAFELSTRTE-  101 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~----~~~~~~~f~i~~~~~-  101 (143)
                      ++++|||.+++...+.|+++||+|.++.|.+|+++.......+.+.|+|.++........    .....++|.|.++.+ 
T Consensus         1 ~~~~G~L~~~~~~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~~   80 (104)
T PF00169_consen    1 CIKEGWLLKKSSSRKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNGK   80 (104)
T ss_dssp             EEEEEEEEEEESSSSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTSE
T ss_pred             CEEEEEEEEECCCCCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeCCCc
Confidence            468999999987788999999999999999999987433567999999999854443332    246789999999986 


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHH
Q 032301          102 TMYFIADSEKEKEDWINSIGRSI  124 (143)
Q Consensus       102 ~~~~~a~s~~e~~~W~~al~~~~  124 (143)
                      .++|+|+|.+++..|+.+|+.++
T Consensus        81 ~~~~~~~s~~~~~~W~~~i~~~~  103 (104)
T PF00169_consen   81 SYLFSAESEEERKRWIQAIQKAI  103 (104)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999886

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=99.81  E-value=7.2e-19  Score=107.77  Aligned_cols=79  Identities=20%  Similarity=0.410  Sum_probs=68.5

Q ss_pred             CCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcc-cCCCcceEEEEeCCeEEEEEcCCHHHHHHHHH
Q 032301           40 IKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAED-VLNKQYAFELSTRTETMYFIADSEKEKEDWIN  118 (143)
Q Consensus        40 ~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~-~~~~~~~f~i~~~~~~~~~~a~s~~e~~~W~~  118 (143)
                      ...|++|||+|++..|+||+++.    ..+.++|+|..+..++...+ .....++|+|.++++++|++|+|+.|+++|+.
T Consensus        18 ~~n~KkRwF~Lt~~~L~Y~k~~~----~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi~a~s~~E~~~Wi~   93 (98)
T cd01244          18 VLHFKKRYFQLTTTHLSWAKDVQ----CKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQLQFEAPVEATDWLN   93 (98)
T ss_pred             CcCCceeEEEECCCEEEEECCCC----CceeeeEEccceEEEEEcCCcccCCCceEEEEeCCCeEEEECCCHHHHHHHHH
Confidence            36899999999999999999874    46899999999877765543 23457899999999999999999999999999


Q ss_pred             HHHH
Q 032301          119 SIGR  122 (143)
Q Consensus       119 al~~  122 (143)
                      ||+.
T Consensus        94 al~k   97 (98)
T cd01244          94 ALEK   97 (98)
T ss_pred             HHhc
Confidence            9975

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=99.81  E-value=2.7e-19  Score=109.33  Aligned_cols=89  Identities=21%  Similarity=0.422  Sum_probs=74.5

Q ss_pred             EEEEEEeCCC-CCCceeEEEEEEC----CeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCe--E
Q 032301           30 SGWLTKQGEY-IKTWRRRWFVLKQ----GKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTE--T  102 (143)
Q Consensus        30 ~G~L~k~~~~-~~~w~~r~~vL~~----~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~--~  102 (143)
                      .|||.|+++. .+.|++|||+|.+    +.|+||+++.   ...|.+.|+|..+.+....+...+++++|+|.++.+  +
T Consensus         2 ~G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~---~~~p~gli~l~~~~V~~v~ds~~~r~~cFel~~~~~~~~   78 (98)
T cd01245           2 KGNLLKRTKSVTKLWKTLYFALILDGSRSHESLLSSPK---KTKPIGLIDLSDAYLYPVHDSLFGRPNCFQIVERALPTV   78 (98)
T ss_pred             CCccccCCCCcccccceeEEEEecCCCCceEEEEcCCC---CCCccceeeccccEEEEccccccCCCeEEEEecCCCCeE
Confidence            5899999876 7999999999986    8999999988   456999999999844444444457799999999986  6


Q ss_pred             EEEEcCCHHHHHHHHHHHHH
Q 032301          103 MYFIADSEKEKEDWINSIGR  122 (143)
Q Consensus       103 ~~~~a~s~~e~~~W~~al~~  122 (143)
                      |+++|++ +|+++||++|+.
T Consensus        79 y~~~a~~-~er~~Wi~~l~~   97 (98)
T cd01245          79 YYSCRSS-EERDKWIESLQA   97 (98)
T ss_pred             EEEeCCH-HHHHHHHHHHhc
Confidence            7777777 999999999975

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=99.78  E-value=5.6e-18  Score=105.09  Aligned_cols=92  Identities=32%  Similarity=0.580  Sum_probs=66.1

Q ss_pred             CceEEEEEEeCCCCCCceeEEEEEE-CCeEEEEecCCCCCCCCcceEEeCCceEE----eecCcccCCCcceEEEEeCC-
Q 032301           27 PERSGWLTKQGEYIKTWRRRWFVLK-QGKLFWFKESTVTRASKPRGVIPVASCLT----VKGAEDVLNKQYAFELSTRT-  100 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~-~~~l~~~~~~~~~~~~~~~~~i~l~~~~~----v~~~~~~~~~~~~f~i~~~~-  100 (143)
                      ++++|||.|+++..+.|++|||+|. ++.|.||++...   ..+.+.++|.+...    +...+  ..+++.|.|...+ 
T Consensus         1 v~k~G~L~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~---~~~~~~i~l~~~~v~~~~~~~~~--~~~~~~F~i~~~~~   75 (102)
T cd01241           1 VVKEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKEKPE---DGDPFLPPLNNFSVAECQLMKTE--RPRPNTFIIRCLQW   75 (102)
T ss_pred             CcEEEEEEeecCCCCCCeeEEEEEeCCCeEEEEecCCC---ccCccccccCCeEEeeeeeeecc--CCCcceEEEEeccC
Confidence            4789999999998999999999999 778888887652   22335566665432    11111  2556899997211 


Q ss_pred             ---eEEEEEcCCHHHHHHHHHHHHHH
Q 032301          101 ---ETMYFIADSEKEKEDWINSIGRS  123 (143)
Q Consensus       101 ---~~~~~~a~s~~e~~~W~~al~~~  123 (143)
                         ...+|+|+|++|+++|+.||+.+
T Consensus        76 ~~~~~r~f~a~s~ee~~eWi~ai~~v  101 (102)
T cd01241          76 TTVIERTFHVESPEEREEWIHAIQTV  101 (102)
T ss_pred             CcccCEEEEeCCHHHHHHHHHHHHhh
Confidence               11256799999999999999865

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain

Probab=99.76  E-value=1.8e-17  Score=105.12  Aligned_cols=96  Identities=25%  Similarity=0.593  Sum_probs=75.2

Q ss_pred             ceEEEEEE-e-CCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecC--c-ccCCCcceEEEEeC--C
Q 032301           28 ERSGWLTK-Q-GEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA--E-DVLNKQYAFELSTR--T  100 (143)
Q Consensus        28 ~~~G~L~k-~-~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~--~-~~~~~~~~f~i~~~--~  100 (143)
                      .+.|||.. + .+..+.|++|||||.|+.|.||+.+.......|++.|+|.+|......  + +...+++.|.|...  .
T Consensus         2 ~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~   81 (122)
T cd01263           2 EYHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPK   81 (122)
T ss_pred             ccceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEeccc
Confidence            56899986 3 346689999999999999999998875434679999999998765442  1 34678999999642  1


Q ss_pred             -----------------eE-EEEEcCCHHHHHHHHHHHHHH
Q 032301          101 -----------------ET-MYFIADSEKEKEDWINSIGRS  123 (143)
Q Consensus       101 -----------------~~-~~~~a~s~~e~~~W~~al~~~  123 (143)
                                       ++ ++|+|+|.+|+++|+.||+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~  122 (122)
T cd01263          82 METDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST  122 (122)
T ss_pred             ccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence                             22 678899999999999999753

Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=99.74  E-value=1.6e-16  Score=98.37  Aligned_cols=97  Identities=22%  Similarity=0.301  Sum_probs=79.1

Q ss_pred             CceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCC--CCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEE
Q 032301           27 PERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVT--RASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMY  104 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~--~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~  104 (143)
                      .+++|||.|.+...+.|++|||+|.++.|.|++.....  ..-.+...++|.++.+.+. + ....+|+|.|..+.++++
T Consensus         2 ~ikeG~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~-~-~~~~~~~F~I~~~~rsf~   79 (101)
T cd01219           2 LLKEGSVLKISSTTEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEG-D-NLERPHSFLVSGKQRCLE   79 (101)
T ss_pred             cccceEEEEEecCCCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeC-C-CCCcCceEEEecCCcEEE
Confidence            47899999998877899999999999999998854211  1224567899999755433 2 235689999999999999


Q ss_pred             EEcCCHHHHHHHHHHHHHHHH
Q 032301          105 FIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus       105 ~~a~s~~e~~~W~~al~~~~~  125 (143)
                      ++|+|++|+.+|+.||+.++.
T Consensus        80 l~A~s~eEk~~W~~ai~~~i~  100 (101)
T cd01219          80 LQARTQKEKNDWVQAIFSIID  100 (101)
T ss_pred             EEcCCHHHHHHHHHHHHHHhh
Confidence            999999999999999999885

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=99.72  E-value=3.4e-16  Score=98.78  Aligned_cols=99  Identities=22%  Similarity=0.337  Sum_probs=77.0

Q ss_pred             eEEEEEEeC------C----CCCCceeEEEEEECCeEEEEecCCCCCC----CCcceEEeCCceEEeecCcccCCCcceE
Q 032301           29 RSGWLTKQG------E----YIKTWRRRWFVLKQGKLFWFKESTVTRA----SKPRGVIPVASCLTVKGAEDVLNKQYAF   94 (143)
Q Consensus        29 ~~G~L~k~~------~----~~~~w~~r~~vL~~~~l~~~~~~~~~~~----~~~~~~i~l~~~~~v~~~~~~~~~~~~f   94 (143)
                      ++|+|.++-      .    ..+.|+++||||.++.|++|+++.....    ......|.|.+++. ....+..+++++|
T Consensus         2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~-~ia~dy~Kr~~VF   80 (117)
T cd01230           2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALA-TRASDYSKKPHVF   80 (117)
T ss_pred             CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEecccee-EeeccccCCCcEE
Confidence            578887761      1    2368999999999999999999862111    23457888888652 2333456899999


Q ss_pred             EEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301           95 ELSTRT-ETMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus        95 ~i~~~~-~~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                      .|.+++ +.++|+|.+.+||+.|+.+|+.+++...
T Consensus        81 ~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~~s  115 (117)
T cd01230          81 RLRTADWREFLFQTSSLKELQSWIERINVVAAAFS  115 (117)
T ss_pred             EEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHhcc
Confidence            999987 8899999999999999999999887543

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=99.70  E-value=4.6e-16  Score=96.87  Aligned_cols=92  Identities=21%  Similarity=0.375  Sum_probs=68.0

Q ss_pred             eEEEEEEeC--------CCCCCceeEEEEEECCeEEEEecCCCCCCCCcce--EEeCCceEEeecCcccCCCcceEEEEe
Q 032301           29 RSGWLTKQG--------EYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRG--VIPVASCLTVKGAEDVLNKQYAFELST   98 (143)
Q Consensus        29 ~~G~L~k~~--------~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~--~i~l~~~~~v~~~~~~~~~~~~f~i~~   98 (143)
                      ++|+|.++.        ...+.|+++||+|.++.|++|+++... ...+.+  .|++.++. +...++..+++++|.|..
T Consensus         1 ~~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~-~~~~~~~~~i~l~~~~-i~~~~~~~k~~~~F~l~~   78 (104)
T cd01253           1 MEGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMA-AENVHGEPPVDLTGAQ-CEVASDYTKKKHVFRLRL   78 (104)
T ss_pred             CCceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCccc-ccCCCCCCcEeccCCE-EEecCCcccCceEEEEEe
Confidence            468887541        135689999999999999999987632 111222  66776653 333333446789999987


Q ss_pred             CC-eEEEEEcCCHHHHHHHHHHHHH
Q 032301           99 RT-ETMYFIADSEKEKEDWINSIGR  122 (143)
Q Consensus        99 ~~-~~~~~~a~s~~e~~~W~~al~~  122 (143)
                      ++ +.++|+|+|++++.+|+.||+.
T Consensus        79 ~~~~~~~f~a~s~e~~~~Wi~aL~~  103 (104)
T cd01253          79 PDGAEFLFQAPDEEEMSSWVRALKS  103 (104)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhc
Confidence            66 8999999999999999999975

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=99.68  E-value=5.2e-16  Score=99.00  Aligned_cols=79  Identities=18%  Similarity=0.494  Sum_probs=66.3

Q ss_pred             CceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcc-----------cCCCcceEEEEeCCeEEEEEcCCH
Q 032301           42 TWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAED-----------VLNKQYAFELSTRTETMYFIADSE  110 (143)
Q Consensus        42 ~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~-----------~~~~~~~f~i~~~~~~~~~~a~s~  110 (143)
                      .|++|||+|++..|.||+++.   +..+.++|.++....+.....           .....++|.|.++++++.|.|+|+
T Consensus        32 ~w~kRWFvlr~s~L~Y~~~~~---~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~R~~~l~a~s~  108 (121)
T cd01254          32 RWQKRWFIVKESFLAYMDDPS---SAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSNRSLKLKCKSS  108 (121)
T ss_pred             CCcceeEEEeCCEEEEEcCCC---CCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCCcEEEEEeCCH
Confidence            699999999999999999987   557999999986444443221           235679999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 032301          111 KEKEDWINSIGRS  123 (143)
Q Consensus       111 ~e~~~W~~al~~~  123 (143)
                      .++.+|+.+|+.|
T Consensus       109 ~~~~~Wi~~i~~a  121 (121)
T cd01254         109 RKLKQWMASIEDA  121 (121)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999864

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=7.4e-16  Score=108.43  Aligned_cols=95  Identities=40%  Similarity=0.793  Sum_probs=79.5

Q ss_pred             CCceEEEEEEeCC-CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC----
Q 032301           26 NPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT----  100 (143)
Q Consensus        26 ~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~----  100 (143)
                      .+..+|||.|.++ ..+.|++|||+|+++-|+||.-..   +..|.+.|+|....+- ..++ .++++||.|..++    
T Consensus       259 npdREGWLlKlgg~rvktWKrRWFiLtdNCLYYFe~tT---DKEPrGIIpLeNlsir-~Ved-P~kP~cfEly~ps~~gq  333 (395)
T KOG0930|consen  259 NPDREGWLLKLGGNRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLENLSIR-EVED-PKKPNCFELYIPSNKGQ  333 (395)
T ss_pred             CccccceeeeecCCcccchhheeEEeecceeeeeeecc---CCCCCcceecccccee-eccC-CCCCCeEEEecCCCCcC
Confidence            5778999999976 568999999999999999999877   6789999999985433 3332 3789999988653    


Q ss_pred             ------------------eEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301          101 ------------------ETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus       101 ------------------~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                                        ..|.++|.+.+|+.+|+.+|+.++.
T Consensus       334 ~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is  376 (395)
T KOG0930|consen  334 VIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS  376 (395)
T ss_pred             eeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence                              1588999999999999999998887

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=99.66  E-value=2e-15  Score=92.57  Aligned_cols=85  Identities=16%  Similarity=0.448  Sum_probs=69.2

Q ss_pred             CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC----eEEEEEcCCHHHHH
Q 032301           39 YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT----ETMYFIADSEKEKE  114 (143)
Q Consensus        39 ~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~----~~~~~~a~s~~e~~  114 (143)
                      ..+.|++|||+|.+..|+||++.+.. ...|...+.+.+|.+... ....++++++.+.+|.    ++|+|.|+|+++..
T Consensus        16 ~~K~~KrrwF~lk~~~L~YyK~kee~-~~~p~i~lnl~gcev~~d-v~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya   93 (106)
T cd01237          16 TLKGYKQYWFTFRDTSISYYKSKEDS-NGAPIGQLNLKGCEVTPD-VNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQYA   93 (106)
T ss_pred             hhhhheeEEEEEeCCEEEEEccchhc-CCCCeEEEecCceEEccc-ccccccceEEEEecCCccCCeEEEEECCCHHHHH
Confidence            34689999999999999999987743 467888888999865433 2223557889988876    89999999999999


Q ss_pred             HHHHHHHHHHH
Q 032301          115 DWINSIGRSIV  125 (143)
Q Consensus       115 ~W~~al~~~~~  125 (143)
                      +|+.|++.|..
T Consensus        94 ~Wmaa~rlas~  104 (106)
T cd01237          94 KWMAACRLASK  104 (106)
T ss_pred             HHHHHHHHhhC
Confidence            99999998864

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>smart00233 PH Pleckstrin homology domain

Probab=99.66  E-value=1e-14  Score=88.72  Aligned_cols=96  Identities=31%  Similarity=0.676  Sum_probs=79.2

Q ss_pred             ceEEEEEEeCC-CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCccc--CCCcceEEEEeCCe-EE
Q 032301           28 ERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDV--LNKQYAFELSTRTE-TM  103 (143)
Q Consensus        28 ~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~--~~~~~~f~i~~~~~-~~  103 (143)
                      +++|||.++.. ....|+++||+|.++.|.+|+.........+...++|.++. +......  ....++|.|..+.+ .+
T Consensus         2 ~~~G~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~-v~~~~~~~~~~~~~~f~l~~~~~~~~   80 (102)
T smart00233        2 IKEGWLYKKSGGKKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGIT-VREAPDPDSAKKPHCFEIKTADRRSY   80 (102)
T ss_pred             ceeEEEEEeCCCccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcCE-EEeCCCCccCCCceEEEEEecCCceE
Confidence            68999999876 56899999999999999999988743225788999999974 4333332  24689999999887 99


Q ss_pred             EEEcCCHHHHHHHHHHHHHHH
Q 032301          104 YFIADSEKEKEDWINSIGRSI  124 (143)
Q Consensus       104 ~~~a~s~~e~~~W~~al~~~~  124 (143)
                      +|.|+|.+++..|+.+|+.++
T Consensus        81 ~f~~~s~~~~~~W~~~i~~~~  101 (102)
T smart00233       81 LLQAESEEEREEWVDALRKAI  101 (102)
T ss_pred             EEEcCCHHHHHHHHHHHHHhh
Confidence            999999999999999998775

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=99.64  E-value=1.2e-14  Score=89.44  Aligned_cols=96  Identities=21%  Similarity=0.309  Sum_probs=71.1

Q ss_pred             CceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCC-CCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEEE
Q 032301           27 PERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKEST-VTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYF  105 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~-~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~~  105 (143)
                      .+++|+|.|..+. +. ++|+|.|-.+.|.|+.... ....-.+.+.++|.++. |+..++....+|+|+|..+.+++.+
T Consensus         2 ~ikEG~L~K~~~k-~~-~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~-V~~~~~~~~~~~~F~I~~~~ks~~l   78 (99)
T cd01220           2 FIRQGCLLKLSKK-GL-QQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGML-TEESEHEWGVPHCFTIFGGQCAITV   78 (99)
T ss_pred             eeeEEEEEEEeCC-CC-ceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceE-EeeccCCcCCceeEEEEcCCeEEEE
Confidence            4789999998642 34 4456666666666665432 11122478999999975 4443433356899999999999999


Q ss_pred             EcCCHHHHHHHHHHHHHHHH
Q 032301          106 IADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus       106 ~a~s~~e~~~W~~al~~~~~  125 (143)
                      +|.|++|+.+|+.+|+.++.
T Consensus        79 ~A~s~~Ek~~Wi~~i~~aI~   98 (99)
T cd01220          79 AASTRAEKEKWLADLSKAIA   98 (99)
T ss_pred             ECCCHHHHHHHHHHHHHHhh
Confidence            99999999999999999985

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF15409 PH_8: Pleckstrin homology domain

Probab=99.63  E-value=9.2e-15  Score=87.40  Aligned_cols=85  Identities=25%  Similarity=0.621  Sum_probs=71.1

Q ss_pred             EEEEEe-CCCCCCceeEEEEE--ECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEEEEc
Q 032301           31 GWLTKQ-GEYIKTWRRRWFVL--KQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIA  107 (143)
Q Consensus        31 G~L~k~-~~~~~~w~~r~~vL--~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~a  107 (143)
                      |||.|+ ....+.|++|||+|  ..+.|.||.++.   +....+.|++..+ .+...    .+...|.|.+....++|.|
T Consensus         1 G~llKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~---~~~~rGsi~v~~a-~is~~----~~~~~I~idsg~~i~hLKa   72 (89)
T PF15409_consen    1 GWLLKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQN---SGKLRGSIDVSLA-VISAN----KKSRRIDIDSGDEIWHLKA   72 (89)
T ss_pred             CcceeeccccCCCceeEEEEEEcCCcEEEEEecCC---CCeeEeEEEccce-EEEec----CCCCEEEEEcCCeEEEEEc
Confidence            788877 44678999999999  899999999886   4467899999986 33322    3457899999999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 032301          108 DSEKEKEDWINSIGRS  123 (143)
Q Consensus       108 ~s~~e~~~W~~al~~~  123 (143)
                      .|+++.+.|+.||+.|
T Consensus        73 ~s~~~f~~Wv~aL~~a   88 (89)
T PF15409_consen   73 KSQEDFQRWVSALQKA   88 (89)
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999999875

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=99.63  E-value=6.8e-15  Score=92.65  Aligned_cols=95  Identities=23%  Similarity=0.465  Sum_probs=56.3

Q ss_pred             eEEEEEEeCCC-CCCceeEEEEEE-CCeEEEEecCCCCC----------CCCcceEEeCC----ceEEeec-CcccCCCc
Q 032301           29 RSGWLTKQGEY-IKTWRRRWFVLK-QGKLFWFKESTVTR----------ASKPRGVIPVA----SCLTVKG-AEDVLNKQ   91 (143)
Q Consensus        29 ~~G~L~k~~~~-~~~w~~r~~vL~-~~~l~~~~~~~~~~----------~~~~~~~i~l~----~~~~v~~-~~~~~~~~   91 (143)
                      ++|+|+|.+.. .+.|++|||+|. ++.|.||+.+....          .....+.....    ....+.. .+......
T Consensus         1 k~G~l~K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (112)
T PF15413_consen    1 KEGYLYKWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEIHL   80 (112)
T ss_dssp             EEEEEEE--TTS-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-SS
T ss_pred             CCceEEEecCCCCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCcCC
Confidence            58999999775 899999999999 99999999943210          11122222211    1111110 01111225


Q ss_pred             ceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 032301           92 YAFELSTRTETMYFIADSEKEKEDWINSIGRS  123 (143)
Q Consensus        92 ~~f~i~~~~~~~~~~a~s~~e~~~W~~al~~~  123 (143)
                      ..|.|.++.++++|.|++.+|..+|+.||++|
T Consensus        81 ~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~  112 (112)
T PF15413_consen   81 KVFSIFTPTKTFHLRCETREDRYDWIEALQEA  112 (112)
T ss_dssp             EEEEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred             CCcEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence            78889999999999999999999999999875

>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain

Probab=99.60  E-value=2.6e-14  Score=85.64  Aligned_cols=94  Identities=19%  Similarity=0.377  Sum_probs=75.5

Q ss_pred             CceEEEEEEeCC--CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC----
Q 032301           27 PERSGWLTKQGE--YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT----  100 (143)
Q Consensus        27 ~~~~G~L~k~~~--~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~----  100 (143)
                      ++..|||.....  ..+.-+++||||+.+.|+||++.+   +.++.++|+|.+...-.......+++|+|.|..++    
T Consensus         1 virkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~e---eKE~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd~rnv   77 (110)
T cd01256           1 VIRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDE---EKEKKYMLPLDGLKLRDIEGGFMSRNHKFALFYPDGRNV   77 (110)
T ss_pred             CeeeeeEEeeccceecCCCcceEEEEecceeeeecccc---cccccceeeccccEEEeecccccCCCcEEEEEcCccccc
Confidence            477899987643  234569999999999999999998   67899999999864444444456788999999765    


Q ss_pred             ----eEEEEEcCCHHHHHHHHHHHHHH
Q 032301          101 ----ETMYFIADSEKEKEDWINSIGRS  123 (143)
Q Consensus       101 ----~~~~~~a~s~~e~~~W~~al~~~  123 (143)
                          +++-+.|++++++..|.+.+-+|
T Consensus        78 ykd~k~lel~~~~~e~vdswkasflra  104 (110)
T cd01256          78 YKDYKQLELGCETLEEVDSWKASFLRA  104 (110)
T ss_pred             ccchheeeecCCCHHHHHHHHHHHHhc
Confidence                56889999999999998877443

Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=99.60  E-value=4e-14  Score=90.10  Aligned_cols=95  Identities=26%  Similarity=0.569  Sum_probs=64.6

Q ss_pred             eEEEEEEe------C--C--CCCCceeEEEEEECCeEEEEecCCC-----C------CCCCcceEEeCCceEEeecCccc
Q 032301           29 RSGWLTKQ------G--E--YIKTWRRRWFVLKQGKLFWFKESTV-----T------RASKPRGVIPVASCLTVKGAEDV   87 (143)
Q Consensus        29 ~~G~L~k~------~--~--~~~~w~~r~~vL~~~~l~~~~~~~~-----~------~~~~~~~~i~l~~~~~v~~~~~~   87 (143)
                      ++|+|.++      +  .  ..+.|+..|+||++..|++|++...     .      ....|...|.|..+.... ..+.
T Consensus         2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~-a~dY   80 (119)
T PF15410_consen    2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEI-ASDY   80 (119)
T ss_dssp             -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEE-ETTB
T ss_pred             ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEe-Cccc
Confidence            68999876      1  1  3468999999999999999998431     0      012245669999875544 5567


Q ss_pred             CCCcceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHH
Q 032301           88 LNKQYAFELSTRT-ETMYFIADSEKEKEDWINSIGRSI  124 (143)
Q Consensus        88 ~~~~~~f~i~~~~-~~~~~~a~s~~e~~~W~~al~~~~  124 (143)
                      .+++|+|.|.+++ ..++|+|.|.+||.+||.+|+.+.
T Consensus        81 ~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A  118 (119)
T PF15410_consen   81 TKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAA  118 (119)
T ss_dssp             TTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred             ccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence            7899999999986 789999999999999999998765

>cd00821 PH Pleckstrin homology (PH) domain

Probab=99.52  E-value=1.7e-13  Score=82.45  Aligned_cols=93  Identities=31%  Similarity=0.683  Sum_probs=74.5

Q ss_pred             eEEEEEEeCCCC-CCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC-eEEEEE
Q 032301           29 RSGWLTKQGEYI-KTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT-ETMYFI  106 (143)
Q Consensus        29 ~~G~L~k~~~~~-~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~-~~~~~~  106 (143)
                      ++|||.++.... ..|+++||+|.++.+.+|..........+...++|.++... ..+......++|.|.+.+ +.++|+
T Consensus         1 ~~G~l~~~~~~~~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~-~~~~~~~~~~~f~i~~~~~~~~~~~   79 (96)
T cd00821           1 KEGYLLKKTGKLRKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSGAEVE-ESPDDSGRKNCFEIRTPDGRSYLLQ   79 (96)
T ss_pred             CcchhhhhhChhhCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCCCEEE-ECCCcCCCCcEEEEecCCCcEEEEE
Confidence            368998876544 78999999999999999988763212578899999985444 333323468999999988 999999


Q ss_pred             cCCHHHHHHHHHHHHH
Q 032301          107 ADSEKEKEDWINSIGR  122 (143)
Q Consensus       107 a~s~~e~~~W~~al~~  122 (143)
                      |+|..++..|+.+|+.
T Consensus        80 ~~s~~~~~~W~~~l~~   95 (96)
T cd00821          80 AESEEEREEWIEALQS   95 (96)
T ss_pred             eCCHHHHHHHHHHHhc
Confidence            9999999999999975

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain

Probab=99.52  E-value=3.2e-14  Score=85.91  Aligned_cols=103  Identities=21%  Similarity=0.408  Sum_probs=79.6

Q ss_pred             ceEEEEEEeCC-CCCCceeEEEEEECCeEEEEecCCC-CCCCCcceEEeCCceEEeecCc---------ccCCCcceEEE
Q 032301           28 ERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTV-TRASKPRGVIPVASCLTVKGAE---------DVLNKQYAFEL   96 (143)
Q Consensus        28 ~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~~~~~~~-~~~~~~~~~i~l~~~~~v~~~~---------~~~~~~~~f~i   96 (143)
                      .++|||.+.|+ ..+.|++|||+|.+-+-+.|.-... .+...|...+.|+|.++..-.+         +..+.++-|..
T Consensus         3 k~sGyL~k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~ekks~P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg~~ff~a   82 (117)
T cd01234           3 KHCGYLYAIGKNVWKKWKKRFFVLVQVSQYTFAMCSYREKKAEPTEFIQLDGYTVDYMPESDPDPNSELSLQGGRHFFNA   82 (117)
T ss_pred             ceeEEEEeccchhhhhhheeEEEEEchhHHHHHHHhhhhhcCCchhheeecceEEeccCCCCCCcccccccccchhhhhe
Confidence            58999999987 6789999999999765444443331 1256799999999976643322         12355788999


Q ss_pred             EeCCeEEEEEcCCHHHHHHHHHHHHHHHHhhCCC
Q 032301           97 STRTETMYFIADSEKEKEDWINSIGRSIVQHSRS  130 (143)
Q Consensus        97 ~~~~~~~~~~a~s~~e~~~W~~al~~~~~~~~~~  130 (143)
                      +..+..+.|.++++.|..-|+.||-+|.-+..++
T Consensus        83 vkegd~~~fa~~de~~r~lwvqa~yratgqshkp  116 (117)
T cd01234          83 VKEGDELKFATDDENERHLWVQAMYRATGQSHKP  116 (117)
T ss_pred             eccCcEEEEeccchHHHHHHHHHHHHHcCcccCC
Confidence            9899999999999999999999999988766554

CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd00900 PH-like Pleckstrin homology-like domain

Probab=99.50  E-value=1.2e-12  Score=79.23  Aligned_cols=90  Identities=30%  Similarity=0.616  Sum_probs=71.7

Q ss_pred             EEEEEEeCCC----CCCceeEEEEEECCeEEEEecCCCCCCCCcc-eEEeCCceEEeecCcccCCCcceEEEEeC---Ce
Q 032301           30 SGWLTKQGEY----IKTWRRRWFVLKQGKLFWFKESTVTRASKPR-GVIPVASCLTVKGAEDVLNKQYAFELSTR---TE  101 (143)
Q Consensus        30 ~G~L~k~~~~----~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~-~~i~l~~~~~v~~~~~~~~~~~~f~i~~~---~~  101 (143)
                      +|||...+..    .+.|+++||+|.++.|.+|+.+..   ..+. ..+++.... +...+......++|.|...   .+
T Consensus         2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~---~~~~~~~~~l~~~~-v~~~~~~~~~~~~F~i~~~~~~~~   77 (99)
T cd00900           2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDK---KEIKPGSIPLSEIS-VEEDPDGSDDPNCFAIVTKDRGRR   77 (99)
T ss_pred             ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCC---CcCCCCEEEccceE-EEECCCCCCCCceEEEECCCCCcE
Confidence            6888887654    378999999999999999999873   2233 578888866 4444332356899999988   68


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHH
Q 032301          102 TMYFIADSEKEKEDWINSIGRS  123 (143)
Q Consensus       102 ~~~~~a~s~~e~~~W~~al~~~  123 (143)
                      .++|+|+|.+++..|+.+|+.+
T Consensus        78 ~~~~~~~~~~~~~~W~~al~~~   99 (99)
T cd00900          78 VFVFQADSEEEAQEWVEALQQA   99 (99)
T ss_pred             EEEEEcCCHHHHHHHHHHHhcC
Confidence            9999999999999999999753

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain

Probab=99.44  E-value=6.3e-12  Score=77.77  Aligned_cols=99  Identities=20%  Similarity=0.257  Sum_probs=76.4

Q ss_pred             CceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEEEE
Q 032301           27 PERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFI  106 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~  106 (143)
                      .+++|-|.|..  .+..+.|+|.|-.+.|.|-+.......-.....++|.++.+ ...++....+++|.|.++.+++.++
T Consensus         4 li~eG~L~K~~--rk~~~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~v-~~~~d~~~~~n~f~I~~~~kSf~v~   80 (104)
T cd01218           4 LVGEGVLTKMC--RKKPKQRQFFLFNDILVYGNIVISKKKYNKQHILPLEGVQV-ESIEDDGIERNGWIIKTPTKSFAVY   80 (104)
T ss_pred             EEecCcEEEee--cCCCceEEEEEecCEEEEEEeecCCceeeEeeEEEccceEE-EecCCcccccceEEEecCCeEEEEE
Confidence            47899999885  45778899999999888864322111223567899999744 3444433558999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHhhC
Q 032301          107 ADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus       107 a~s~~e~~~W~~al~~~~~~~~  128 (143)
                      |+|.+|..+|+.+|+.|+....
T Consensus        81 A~s~~eK~eWl~~i~~ai~~~l  102 (104)
T cd01218          81 AATETEKREWMLHINKCVTDLL  102 (104)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999998653

Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain

Probab=99.34  E-value=9.1e-11  Score=72.18  Aligned_cols=96  Identities=16%  Similarity=0.465  Sum_probs=73.7

Q ss_pred             eEEEEEEeCC--C--CCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecC---c----ccCCCcceEEEE
Q 032301           29 RSGWLTKQGE--Y--IKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA---E----DVLNKQYAFELS   97 (143)
Q Consensus        29 ~~G~L~k~~~--~--~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~---~----~~~~~~~~f~i~   97 (143)
                      ++|||.....  .  .+.|++.|+||.+..+++|..+.......|..++++.....|.+.   +    +...-++.|+|.
T Consensus         2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I~   81 (112)
T cd01242           2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQIL   81 (112)
T ss_pred             cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeecCcccCCeEEEEE
Confidence            6899986532  2  258999999999999999998886545668888888763333221   1    123448999999


Q ss_pred             eCC--eEEEEEcCCHHHHHHHHHHHHHHH
Q 032301           98 TRT--ETMYFIADSEKEKEDWINSIGRSI  124 (143)
Q Consensus        98 ~~~--~~~~~~a~s~~e~~~W~~al~~~~  124 (143)
                      ..+  ++++|-|+++.|.+.|+.+|.+.+
T Consensus        82 ~~~~~~~lllLA~s~~ek~kWV~~L~~~~  110 (112)
T cd01242          82 YANEARDLLLLAPQTDEQNKWVSRLVKKI  110 (112)
T ss_pred             eCCccceEEEEeCCchHHHHHHHHHHHhc
Confidence            866  789999999999999999997755

Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]

Probab=99.25  E-value=7.6e-13  Score=101.09  Aligned_cols=125  Identities=21%  Similarity=0.379  Sum_probs=95.8

Q ss_pred             hhhHHhcccccCCCCCCccccCCCceEEEEEEeCC---CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEE
Q 032301            4 LWRAISGQTNQLSDYDSTEFWSNPERSGWLTKQGE---YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLT   80 (143)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~k~~~---~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~   80 (143)
                      .|.|++|.+|+.... .++..+.+..+|.|..+.+   +.+.|+.|||.|.+..|.|.+........  -..|+|+.+..
T Consensus       713 ~W~Cf~CnnPeKa~y-Fvn~~gqp~iEGQLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS~--~~~IDl~~IRS  789 (851)
T KOG3723|consen  713 AWQCFMCNNPEKATY-FVNQDGQPLIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDSD--DCPIDLSKIRS  789 (851)
T ss_pred             ccceeecCChHHeee-eecCCCCchhcchhhhhccchhhhhhhccceEEecchhhhcccCCCCCCCC--CCCccHHHhhh
Confidence            699999999986644 3344566799999986543   56899999999999999997665532122  26688887766


Q ss_pred             eecCccc---CCCcceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhhCCCC
Q 032301           81 VKGAEDV---LNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSV  131 (143)
Q Consensus        81 v~~~~~~---~~~~~~f~i~~~~~~~~~~a~s~~e~~~W~~al~~~~~~~~~~~  131 (143)
                      |......   ..-+-.|.|.+.+.++.+.+.+++.+++|+++|+-+++.+....
T Consensus       790 Vk~v~~kr~~rslpKAFEIFTAD~T~ILKaKDeKNAEEWlqCL~IavAHa~~r~  843 (851)
T KOG3723|consen  790 VKAVAKKRRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIAVAHAKERE  843 (851)
T ss_pred             HHHHHhhhhhcccchhhheeecCceEEeecccccCHHHHHHHHHHHHHHHHHHH
Confidence            6643311   22367899999999999999999999999999999998765543

>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain

Probab=99.23  E-value=7.3e-11  Score=72.73  Aligned_cols=98  Identities=16%  Similarity=0.307  Sum_probs=68.0

Q ss_pred             eEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCc----ccCCCcceEEEEeCC----
Q 032301           29 RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE----DVLNKQYAFELSTRT----  100 (143)
Q Consensus        29 ~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~----~~~~~~~~f~i~~~~----  100 (143)
                      .+|+|+.+....+.|+++||+|+...|+|+....-...........+.+..+.....    -.....++|.|..+.    
T Consensus         2 ~~g~LylK~~gkKsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~q~~   81 (114)
T cd01259           2 MEGPLYLKADGKKSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGDQSK   81 (114)
T ss_pred             ccceEEEccCCCccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEeccccCcc
Confidence            589999997778999999999999999988766522112223344444432222221    112347899997643    


Q ss_pred             ---eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301          101 ---ETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus       101 ---~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                         ...+|+|+|++.+..|+.||+-+...
T Consensus        82 ~s~~ik~lCaeDe~t~~~W~ta~Ri~KyG  110 (114)
T cd01259          82 GSQSIKYLCAEDLPTLDRWLTAIRIAKYG  110 (114)
T ss_pred             cchhheeeccCCHHHHHHHHHHHHHHhhh
Confidence               34789999999999999999887653

Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain

Probab=99.23  E-value=7.6e-10  Score=69.12  Aligned_cols=96  Identities=19%  Similarity=0.326  Sum_probs=69.1

Q ss_pred             ceEEEEEEeC--CCCCCceeEEEEEECCeEEEEecCCCCCC---CCcceEEeCC-ceEEeec---Cc----ccCCCcceE
Q 032301           28 ERSGWLTKQG--EYIKTWRRRWFVLKQGKLFWFKESTVTRA---SKPRGVIPVA-SCLTVKG---AE----DVLNKQYAF   94 (143)
Q Consensus        28 ~~~G~L~k~~--~~~~~w~~r~~vL~~~~l~~~~~~~~~~~---~~~~~~i~l~-~~~~v~~---~~----~~~~~~~~f   94 (143)
                      .++|||....  +..+.|+++|+||.+..|++|..+.....   ..+.-++++. +...|..   .+    +....++.|
T Consensus         3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If   82 (122)
T cd01243           3 AYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIF   82 (122)
T ss_pred             cceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEE
Confidence            5799998653  33468999999999999999998774322   3455667884 3333321   11    123448899


Q ss_pred             EEEeC-------CeEEEEEcCCHHHHHHHHHHHHHH
Q 032301           95 ELSTR-------TETMYFIADSEKEKEDWINSIGRS  123 (143)
Q Consensus        95 ~i~~~-------~~~~~~~a~s~~e~~~W~~al~~~  123 (143)
                      +|...       ..+.+|-|+|+.|.+.|+.||...
T Consensus        83 ~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l  118 (122)
T cd01243          83 RVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL  118 (122)
T ss_pred             EEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence            99863       367999999999999999999754

MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain

Probab=99.22  E-value=3.9e-10  Score=70.57  Aligned_cols=100  Identities=18%  Similarity=0.213  Sum_probs=75.3

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCC--------CCCcceEEeCCceEEeecCcccCCCcceEEEE
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTR--------ASKPRGVIPVASCLTVKGAEDVLNKQYAFELS   97 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~--------~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~   97 (143)
                      ..+++|-|.+.+...+..+.|+|.|-++.|.|.+....+.        .-...+.+++.++.+ ...++...-+++|.|.
T Consensus         3 elI~EG~L~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V-~d~~d~~~~knaF~I~   81 (112)
T cd01261           3 EFIMEGTLTRVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDI-NDKPDSSEYKNAFEII   81 (112)
T ss_pred             cccccCcEEEEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEE-EEcCCCcccCceEEEE
Confidence            3588999998875557889999999999999988644210        112335577777543 3444444558999999


Q ss_pred             eC-CeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           98 TR-TETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        98 ~~-~~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      +. .+.+.|+|.|+++..+|+.+|..++..
T Consensus        82 ~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~~  111 (112)
T cd01261          82 LKDGNSVIFSAKNAEEKNNWMAALISVQTK  111 (112)
T ss_pred             cCCCCEEEEEECCHHHHHHHHHHHHHHhcC
Confidence            85 578999999999999999999988753

Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A

Probab=99.20  E-value=5.5e-10  Score=68.97  Aligned_cols=90  Identities=22%  Similarity=0.386  Sum_probs=66.9

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECC-eEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEE
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQG-KLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMY  104 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~-~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~  104 (143)
                      .++++|.+.|+.+..  .++|+++|++. .|.|+....    ....+.|+++....++.     .....|.|.+|+++|+
T Consensus        12 ~Il~~g~v~K~kgl~--~kkR~liLTd~PrL~Yvdp~~----~~~KGeI~~~~~l~v~~-----k~~~~F~I~tp~RtY~   80 (104)
T PF14593_consen   12 LILKQGYVKKRKGLF--AKKRQLILTDGPRLFYVDPKK----MVLKGEIPWSKELSVEV-----KSFKTFFIHTPKRTYY   80 (104)
T ss_dssp             -EEEEEEEEEEETTE--EEEEEEEEETTTEEEEEETTT----TEEEEEE--STT-EEEE-----CSSSEEEEEETTEEEE
T ss_pred             eEEEEEEEEEeeceE--EEEEEEEEccCCEEEEEECCC----CeECcEEecCCceEEEE-----ccCCEEEEECCCcEEE
Confidence            478999999997653  89999999988 666665553    45679999997666654     3346999999999999


Q ss_pred             EEcCCHHHHHHHHHHHHHHHHhh
Q 032301          105 FIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus       105 ~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      |.. ...++..|+.+|+.+...+
T Consensus        81 l~d-~~~~A~~W~~~I~~~~~~~  102 (104)
T PF14593_consen   81 LED-PEGNAQQWVEAIEEVKKQY  102 (104)
T ss_dssp             EE--TTS-HHHHHHHHHHHHHHH
T ss_pred             EEC-CCCCHHHHHHHHHHHHHHh
Confidence            986 4456888999999998764

>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain

Probab=99.17  E-value=6.2e-10  Score=68.95  Aligned_cols=93  Identities=17%  Similarity=0.371  Sum_probs=73.9

Q ss_pred             ceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCccc----CCCcceEEEEeCCeEE
Q 032301           28 ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDV----LNKQYAFELSTRTETM  103 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~----~~~~~~f~i~~~~~~~  103 (143)
                      +++|||-.-...-+.|||+|+.|..+.+.+|.++.   ...+...|+|..+..|+.....    ....|+|.|.|.+.+|
T Consensus         1 lkEGWmVHyT~~d~~rKRhYWrLDsK~Itlf~~e~---~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~~~vY   77 (117)
T cd01239           1 LKEGWMVHYTSSDNRRKKHYWRLDSKAITLYQEES---GSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTTTNVY   77 (117)
T ss_pred             CccceEEEEecCccceeeeEEEecCCeEEEEEcCC---CCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEecCEEE
Confidence            47899977644447899999999999999999987   6678999999998888754321    2568999999999999


Q ss_pred             EEEcC--------------------CHHHHHHHHHHHHHH
Q 032301          104 YFIAD--------------------SEKEKEDWINSIGRS  123 (143)
Q Consensus       104 ~~~a~--------------------s~~e~~~W~~al~~~  123 (143)
                      |+..+                    ....++.|-.||+.|
T Consensus        78 ~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA  117 (117)
T cd01239          78 FVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA  117 (117)
T ss_pred             EecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence            99664                    234668899998754

Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.15  E-value=7.7e-11  Score=85.82  Aligned_cols=101  Identities=27%  Similarity=0.512  Sum_probs=71.2

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEE-CCeEEEEecCCCCCCC--CcceEEeCCceEEeecCcccCCCcceEEEEeCC-
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLK-QGKLFWFKESTVTRAS--KPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT-  100 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~-~~~l~~~~~~~~~~~~--~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~-  100 (143)
                      .+++++|||+|+|...+.|++|||+|. ++.+.-|+........  .|+.-..+.+|..+..   ...+++.|.|.... 
T Consensus        13 ~~vvkEgWlhKrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~---erPrPntFiiRcLQW   89 (516)
T KOG0690|consen   13 EDVVKEGWLHKRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDCQTMKT---ERPRPNTFIIRCLQW   89 (516)
T ss_pred             hhhHHhhhHhhcchhhhcccceEEEEeeCCceEeeccCCccCCCCcccccchhhhhhhhhhc---cCCCCceEEEEeeee
Confidence            368999999999999999999999996 6777778766522111  1222222333322211   13678999998754 


Q ss_pred             ---eEEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301          101 ---ETMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus       101 ---~~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                         -...|+++|.++.++|+.||+.+.....
T Consensus        90 TTVIERTF~ves~~eRq~W~~AIq~vsn~l~  120 (516)
T KOG0690|consen   90 TTVIERTFYVESAEERQEWIEAIQAVSNRLK  120 (516)
T ss_pred             eeeeeeeeecCCHHHHHHHHHHHHHHhhhhh
Confidence               3456889999999999999998876443

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.15  E-value=1.4e-10  Score=90.49  Aligned_cols=107  Identities=19%  Similarity=0.356  Sum_probs=84.5

Q ss_pred             CceEEEEEEeCCC-----CCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcc-cCCCcceEEEEeCC
Q 032301           27 PERSGWLTKQGEY-----IKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAED-VLNKQYAFELSTRT  100 (143)
Q Consensus        27 ~~~~G~L~k~~~~-----~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~-~~~~~~~f~i~~~~  100 (143)
                      +.++|.|.++...     .+.+|+|||.|+...|.|.|++.    ..|...|+|..+..|+..++ ..+.+|+|+|++.+
T Consensus       565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~----~q~~~~Ipl~nI~avEklee~sF~~knv~qVV~~d  640 (800)
T KOG2059|consen  565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPG----KQPIYTIPLSNIRAVEKLEEKSFKMKNVFQVVHTD  640 (800)
T ss_pred             eecccceEeccccccchhhhhhhheEEEeccceeEEecCCc----cCcccceeHHHHHHHHHhhhhccCCCceEEEEecC
Confidence            3456666665322     25789999999999999999995    45899999999877775543 35679999999999


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCCccc
Q 032301          101 ETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSEIV  137 (143)
Q Consensus       101 ~~~~~~a~s~~e~~~W~~al~~~~~~~~~~~~~~~~~  137 (143)
                      ++.|++|.+-.|..+|+++|+.+...+.......+..
T Consensus       641 rtly~Q~~n~vEandWldaL~kvs~~N~~rLas~HPg  677 (800)
T KOG2059|consen  641 RTLYVQAKNCVEANDWLDALRKVSCCNQNRLASYHPG  677 (800)
T ss_pred             cceeEecCCchHHHHHHHHHHHHhccCcchhhhcCCc
Confidence            9999999999999999999999988666544444433

>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]

Probab=99.12  E-value=2.8e-11  Score=97.49  Aligned_cols=96  Identities=27%  Similarity=0.563  Sum_probs=81.8

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEE--CCeEEEEecCCCCCCCCcceEEeCCceEEeec-CcccCCCcceEEEEeCCeE
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLK--QGKLFWFKESTVTRASKPRGVIPVASCLTVKG-AEDVLNKQYAFELSTRTET  102 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~--~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~-~~~~~~~~~~f~i~~~~~~  102 (143)
                      ..+.+|+|+|+|...+.|+.|||||.  ...|.||.+-+   +.+|.|.|+|.....+.. .++....+--|.+.+.+++
T Consensus      1633 Nr~~eG~LyKrGA~lK~Wk~RwFVLd~~khqlrYYd~~e---dt~pkG~IdLaevesv~~~~~k~vdekgffdlktt~rv 1709 (1732)
T KOG1090|consen 1633 NRIPEGYLYKRGAKLKLWKPRWFVLDPDKHQLRYYDDFE---DTKPKGCIDLAEVESVALIGPKTVDEKGFFDLKTTNRV 1709 (1732)
T ss_pred             ccCcccchhhcchhhcccccceeEecCCccceeeecccc---cccccchhhhhhhhhhcccCccccCccceeeeehhhHH
Confidence            45679999999999999999999996  46899999988   557999999987665544 2234456788999999999


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHH
Q 032301          103 MYFIADSEKEKEDWINSIGRSI  124 (143)
Q Consensus       103 ~~~~a~s~~e~~~W~~al~~~~  124 (143)
                      |-|+|.+...+++|+.+|+.++
T Consensus      1710 ynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1710 YNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred             HHHHhccchHHHHHHHHHHHhh
Confidence            9999999999999999999875

>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=99.11  E-value=2.1e-10  Score=91.83  Aligned_cols=102  Identities=24%  Similarity=0.499  Sum_probs=83.3

Q ss_pred             CCceEEEEEEe--CCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCc---ccCCCcceEEEEe--
Q 032301           26 NPERSGWLTKQ--GEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE---DVLNKQYAFELST--   98 (143)
Q Consensus        26 ~~~~~G~L~k~--~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~---~~~~~~~~f~i~~--   98 (143)
                      ++.+.|||+.-  +..++.|.|+||+|.++.+.|.+.+.+.+.+.|.+.|+|..|+.-...+   +...+.+.|.|.+  
T Consensus       989 dVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~r 1068 (1116)
T KOG3640|consen  989 DVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVWR 1068 (1116)
T ss_pred             ceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhcccCcceeeehhhhhccccccchhhhccCCceeEEEeec
Confidence            57788999764  3456789999999999999999998876677899999999998765444   3467899999983  


Q ss_pred             -------C----Ce-EEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301           99 -------R----TE-TMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus        99 -------~----~~-~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                             +    .+ ...|.|++.++++.|+.+|+.++...
T Consensus      1069 Pl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~L 1109 (1116)
T KOG3640|consen 1069 PLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQL 1109 (1116)
T ss_pred             ccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHHH
Confidence                   1    12 47899999999999999999887653

>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain

Probab=99.09  E-value=3.1e-09  Score=65.16  Aligned_cols=91  Identities=21%  Similarity=0.486  Sum_probs=60.8

Q ss_pred             eEEEEEEeCC--CCCCceeEEEEEECC-eEE---EEecCC--C-CCCCCcceEEeCCceEEeecCcccCCCcceEEEEeC
Q 032301           29 RSGWLTKQGE--YIKTWRRRWFVLKQG-KLF---WFKEST--V-TRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTR   99 (143)
Q Consensus        29 ~~G~L~k~~~--~~~~w~~r~~vL~~~-~l~---~~~~~~--~-~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~   99 (143)
                      ++|||+.+.+  ....|.+.||...+. .++   .+....  . .........+.|..|+ +...+ ...+++||.|..+
T Consensus         1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~-~r~~~-~~dRRFCFei~~~   78 (104)
T cd01249           1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCS-RRKTE-SIDKRFCFDVEVE   78 (104)
T ss_pred             CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeecc-ccccC-CccceeeEeeeec
Confidence            4799998743  334799999998753 332   222221  0 1112233556666764 33333 3478999999887


Q ss_pred             Ce--EEEEEcCCHHHHHHHHHHHH
Q 032301          100 TE--TMYFIADSEKEKEDWINSIG  121 (143)
Q Consensus       100 ~~--~~~~~a~s~~e~~~W~~al~  121 (143)
                      .+  ++.|+|+|+.+...|+.|+.
T Consensus        79 ~~~~~~~lQA~Se~~~~~Wi~A~d  102 (104)
T cd01249          79 EKPGVITMQALSEKDRRLWIEAMD  102 (104)
T ss_pred             CCCCeEEEEecCHHHHHHHHHhhc
Confidence            75  89999999999999999973

Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PLN00188 enhanced disease resistance protein (EDR2); Provisional

Probab=99.00  E-value=7.2e-09  Score=81.94  Aligned_cols=101  Identities=19%  Similarity=0.257  Sum_probs=80.4

Q ss_pred             CCceEEEEEEeCC---CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCccc---CCCcceEEEEeC
Q 032301           26 NPERSGWLTKQGE---YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDV---LNKQYAFELSTR   99 (143)
Q Consensus        26 ~~~~~G~L~k~~~---~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~---~~~~~~f~i~~~   99 (143)
                      ++.++|||+..+.   +....++|||||.+..+.|||..... ...|..+..+.++..|+...-.   .+--++|.|.+.
T Consensus         3 ~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~-~~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn~   81 (719)
T PLN00188          3 KVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQD-NQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK   81 (719)
T ss_pred             cceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCcc-ccccceeeccCCCceEeecCceEEcCceEEEEEEecC
Confidence            5689999998764   34578999999999999999987644 3678888889987788765421   112467788765


Q ss_pred             ---CeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301          100 ---TETMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus       100 ---~~~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                         ++...|.|.|.+|+..|+.||+.++.+.
T Consensus        82 ~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~  112 (719)
T PLN00188         82 KEKYHRITMAAFNIQEALIWKEKIESVIDQH  112 (719)
T ss_pred             CCccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence               3678999999999999999999999975

>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain

Probab=98.94  E-value=6.3e-09  Score=64.48  Aligned_cols=94  Identities=22%  Similarity=0.461  Sum_probs=67.1

Q ss_pred             eEEEEEEeCC----CCCCceeEEEEEECCeEEEEecCCCC--CCCCcceEEeCCc--eEEeecCcccC---CCcceEEEE
Q 032301           29 RSGWLTKQGE----YIKTWRRRWFVLKQGKLFWFKESTVT--RASKPRGVIPVAS--CLTVKGAEDVL---NKQYAFELS   97 (143)
Q Consensus        29 ~~G~L~k~~~----~~~~w~~r~~vL~~~~l~~~~~~~~~--~~~~~~~~i~l~~--~~~v~~~~~~~---~~~~~f~i~   97 (143)
                      +.|||..+-.    ..+.|+++|++|++..+++|+.+...  .-..|....+|-.  ...+...+...   +++++|.|.
T Consensus         1 hmGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~ir   80 (108)
T cd01258           1 HIGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIR   80 (108)
T ss_pred             CceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEE
Confidence            3689987722    34789999999999999999988731  1233555555441  11122222223   678999999


Q ss_pred             eCC--eEEEEEcCCHHHHHHHHHHHHH
Q 032301           98 TRT--ETMYFIADSEKEKEDWINSIGR  122 (143)
Q Consensus        98 ~~~--~~~~~~a~s~~e~~~W~~al~~  122 (143)
                      +..  .+++|..++..|+..|..||+.
T Consensus        81 tg~~vesh~fsVEt~~dL~~W~raiv~  107 (108)
T cd01258          81 TGTQVENHYLRVETHRDLASWERALVR  107 (108)
T ss_pred             cCCceeeEEEEecCHHHHHHHHHHHhc
Confidence            987  6799999999999999999964

Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain

Probab=98.83  E-value=5.3e-09  Score=63.98  Aligned_cols=98  Identities=17%  Similarity=0.343  Sum_probs=73.7

Q ss_pred             CCceEEEEEEeCC-CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC-eEE
Q 032301           26 NPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT-ETM  103 (143)
Q Consensus        26 ~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~-~~~  103 (143)
                      |++..|++.|.|+ +...|++|||-|.++.|-+|....    ......|.+..+..|.......+...|..|...+ ..+
T Consensus         2 DcIvhGyi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~----~~~~eLi~M~~i~~V~~e~~~iK~~~CI~ik~k~~~k~   77 (116)
T cd01240           2 DCIVHGYIKKLGGPFLSQWQTRYFKLYPNRLELYGESE----ANKPELITMDQIEDVSVEFQQIKEENCILLKIRDEKKI   77 (116)
T ss_pred             ceEEeeehhhhCCHHHHHHHHHHheeCcceeeeccccc----ccCCcEEEeehhhhcchhheeeccCceEEEEEcCCceE
Confidence            6799999999875 668999999999999999964432    2355666666655444332223556788887765 668


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHHhh
Q 032301          104 YFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus       104 ~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      ++.++|..+..+|...|+.+-..+
T Consensus        78 vlt~~d~i~l~qW~~elr~a~r~S  101 (116)
T cd01240          78 VLTNSDEIELKQWKKELRDAHRES  101 (116)
T ss_pred             EEecCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999998876543

Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or

>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain

Probab=98.73  E-value=7.3e-07  Score=54.53  Aligned_cols=92  Identities=17%  Similarity=0.254  Sum_probs=68.7

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC---e
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT---E  101 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~---~  101 (143)
                      ++.+++|.+...+.    -+.|++.|-+..|.+.+....  .-.....|.+++....+..+   ..++.|.|....   .
T Consensus         2 geLlleg~l~~~~~----~~eR~vFLFe~~ll~~K~~~~--~y~~K~~i~~~~l~i~e~~~---~d~~~F~v~~~~~p~~   72 (97)
T cd01222           2 GDLLLEGRFREHGG----GKPRLLFLFQTMLLIAKPRGD--KYQFKAYIPCKNLMLVEHLP---GEPLCFRVIPFDDPKG   72 (97)
T ss_pred             CceeeeceEEeecC----CCceEEEEecccEEEEEecCC--eeEEEEEEEecceEEecCCC---CCCcEEEEEecCCCce
Confidence            45678888875543    356999999999999887652  33455677777754444333   347999997654   6


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHHH
Q 032301          102 TMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus       102 ~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                      .+.|+|.|.++.+.|+++|+.++.
T Consensus        73 ~~~l~A~s~e~K~~W~~~i~~~i~   96 (97)
T cd01222          73 ALQLTARNREEKRIWTQQLKRAML   96 (97)
T ss_pred             EEEEEecCHHHHHHHHHHHHHHhh
Confidence            899999999999999999998874

Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain

Probab=98.71  E-value=1.2e-06  Score=54.32  Aligned_cols=96  Identities=16%  Similarity=0.174  Sum_probs=70.6

Q ss_pred             CceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCC-CCCCcceEEeCCceEEeecCccc-----CCCcceEEEEeCC
Q 032301           27 PERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVT-RASKPRGVIPVASCLTVKGAEDV-----LNKQYAFELSTRT  100 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~-~~~~~~~~i~l~~~~~v~~~~~~-----~~~~~~f~i~~~~  100 (143)
                      .+++|-|.+.+...+.=+.|++.|-++.|.|.|..... ..-.-.+.|.++.+.++...+..     ..-+++|.|....
T Consensus         2 li~~Gel~~~s~~~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~   81 (109)
T cd01224           2 LFLQGEATRQKQNKGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSES   81 (109)
T ss_pred             ceEeeeEEEEecccCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEEcC
Confidence            47899999886432233689999999999999965421 12345688999987665543321     1237899999876


Q ss_pred             --eEEEEEcCCHHHHHHHHHHHHH
Q 032301          101 --ETMYFIADSEKEKEDWINSIGR  122 (143)
Q Consensus       101 --~~~~~~a~s~~e~~~W~~al~~  122 (143)
                        ..+.|+|.|.++...|+.||..
T Consensus        82 ~~~~~~f~~Kt~e~K~~Wm~a~~~  105 (109)
T cd01224          82 TDEWYLFSFKSAERKHRWLSAFAL  105 (109)
T ss_pred             CCeEEEEEECCHHHHHHHHHHHHH
Confidence              6799999999999999999853

Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain

Probab=98.71  E-value=6.7e-07  Score=55.27  Aligned_cols=102  Identities=18%  Similarity=0.248  Sum_probs=75.5

Q ss_pred             cccCCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC-
Q 032301           22 EFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT-  100 (143)
Q Consensus        22 ~~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~-  100 (143)
                      ...+.++..+-+..+......=..||++|....|.+......-..-.-.+.++|.+..+ ...++..+.++.|.|..+. 
T Consensus         7 ~~lG~vi~mS~V~~~~~~~qe~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v-~~lEd~e~~~~aFeI~G~li   85 (111)
T cd01225           7 KTLGNVIHMSQVAVQYGAGEEKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIV-TRLEDTEALKNAFEISGPLI   85 (111)
T ss_pred             hhcCceEEEEEEEEecCCccccceeEEEEcCceEEEEEcCCCccceEEeeeecccccEE-echHhccCccceEEEeccCc
Confidence            34566777777777654445567899999999887776533211334568899999644 4445555779999999887 


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHHH
Q 032301          101 ETMYFIADSEKEKEDWINSIGRSI  124 (143)
Q Consensus       101 ~~~~~~a~s~~e~~~W~~al~~~~  124 (143)
                      ..+.+.|.+++|+.+|+..|++.+
T Consensus        86 ~~i~v~C~~~~e~~~Wl~hL~~~~  109 (111)
T cd01225          86 ERIVVVCNNPQDAQEWVELLNANN  109 (111)
T ss_pred             CcEEEEeCCHHHHHHHHHHHHhhc
Confidence            789999999999999999998743

Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain

Probab=98.71  E-value=4.4e-07  Score=54.08  Aligned_cols=87  Identities=18%  Similarity=0.270  Sum_probs=66.7

Q ss_pred             CceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCc-eEEeecCcccCCCcceEEEEeCCeEEEE
Q 032301           27 PERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVAS-CLTVKGAEDVLNKQYAFELSTRTETMYF  105 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~-~~~v~~~~~~~~~~~~f~i~~~~~~~~~  105 (143)
                      +++.|.+.++.+.  .+++|-++|++.--.+|-++.   .....+.|+++. ...++.     .....|.|.+|+++|+|
T Consensus         1 Il~~g~v~Kr~gl--f~kkR~LiLTd~PrL~yvdp~---~~~~KgeIp~s~~~l~v~~-----~~~~~F~I~Tp~rty~l   70 (89)
T cd01262           1 ILKIGAVKKRKGL--FAKKRQLILTNGPRLIYVDPV---KKVVKGEIPWSDVELRVEV-----KNSSHFFVHTPNKVYSF   70 (89)
T ss_pred             Cceeeeeeehhcc--ccceeeEEEecCceEEEEcCC---cCeEEeEecccccceEEEE-----ecCccEEEECCCceEEE
Confidence            3678999988764  679999999976655565555   456789999998 555544     33479999999999999


Q ss_pred             EcCCHHHHHHHHHHHHHHH
Q 032301          106 IADSEKEKEDWINSIGRSI  124 (143)
Q Consensus       106 ~a~s~~e~~~W~~al~~~~  124 (143)
                      . +-...+..|+.+|..+.
T Consensus        71 e-D~~~~a~~W~~~I~~~~   88 (89)
T cd01262          71 E-DPKGRASQWKKAIEDLQ   88 (89)
T ss_pred             E-CCCCCHHHHHHHHHHHh
Confidence            6 33578899999998763

3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=98.70  E-value=1.6e-07  Score=72.75  Aligned_cols=98  Identities=15%  Similarity=0.317  Sum_probs=65.9

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeC---CceEEeecCcccCCCcceEEEEeCC-
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPV---ASCLTVKGAEDVLNKQYAFELSTRT-  100 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l---~~~~~v~~~~~~~~~~~~f~i~~~~-  100 (143)
                      .++...||+.+.+... .|++|||.+.++.+.................+.+   .++..+... ....++++|.|.+.. 
T Consensus       375 sDv~~~G~l~k~~~~~-~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~~-~~~~~~~~~~i~~~~~  452 (478)
T PTZ00267        375 SDVTHGGYLYKYSSDM-RWKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPEV-YSQKHPNQLVLWFNNG  452 (478)
T ss_pred             CCcccceEEeccCCCc-chhhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccHH-hcCCCCceEEEEecCC
Confidence            4678899999987544 5999999998877766543221111222222333   333333111 123568999998754 


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHHH
Q 032301          101 ETMYFIADSEKEKEDWINSIGRSI  124 (143)
Q Consensus       101 ~~~~~~a~s~~e~~~W~~al~~~~  124 (143)
                      +.++|.|+|.+++++|+.+|+.++
T Consensus       453 ~~~~~~~~~~~~~~~W~~~~~~~~  476 (478)
T PTZ00267        453 QKIIAYAKTAEDRDQWISKFQRAC  476 (478)
T ss_pred             cEEEEecCChHHHHHHHHHHHHHh
Confidence            778899999999999999999875

>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=1.6e-08  Score=77.77  Aligned_cols=103  Identities=24%  Similarity=0.364  Sum_probs=73.4

Q ss_pred             CCCceEEEEEEe------C----CCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEE-----eecCcccCC
Q 032301           25 SNPERSGWLTKQ------G----EYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLT-----VKGAEDVLN   89 (143)
Q Consensus        25 ~~~~~~G~L~k~------~----~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~-----v~~~~~~~~   89 (143)
                      ...-+.|+|.++      +    .+.+.|+.-|-+|+|..|++-+++-..  ...+.--.|.+...     .....++.+
T Consensus       504 a~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p--~kalse~~lknavsvHHALAt~AtdY~K  581 (774)
T KOG0932|consen  504 AATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKP--GKALSESDLKNAVSVHHALATPATDYSK  581 (774)
T ss_pred             chhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCc--ccchhhhhhhhhhhhhhhhcCCCccccc
Confidence            345678999765      1    134689999999999998887766421  11122222333222     234567788


Q ss_pred             CcceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHhhCC
Q 032301           90 KQYAFELSTRT-ETMYFIADSEKEKEDWINSIGRSIVQHSR  129 (143)
Q Consensus        90 ~~~~f~i~~~~-~~~~~~a~s~~e~~~W~~al~~~~~~~~~  129 (143)
                      ++|+|.+.+.+ +.++|+|.+.++|+.|+..|+.+.+....
T Consensus       582 Kp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA~fSa  622 (774)
T KOG0932|consen  582 KPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAAAFSA  622 (774)
T ss_pred             CCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHHhccC
Confidence            99999999987 99999999999999999999988775443

>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]

Probab=98.66  E-value=9.3e-08  Score=72.98  Aligned_cols=100  Identities=19%  Similarity=0.367  Sum_probs=67.2

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCc--c--cCCCcceEEEEeCC-
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE--D--VLNKQYAFELSTRT-  100 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~--~--~~~~~~~f~i~~~~-  100 (143)
                      -+.++|+|+.+....+.||+.||||+...|+|+....-+.-+.....-++.+-.+.....  .  .....|+|.|.... 
T Consensus       316 ~pei~GfL~~K~dgkKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~~K~~~~  395 (622)
T KOG3751|consen  316 PPEIQGFLYLKEDGKKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGFCIKPNKL  395 (622)
T ss_pred             CccccceeeecccccccceeEEEEEecCcceEccCCCCCCchhhHHHHhcccCceEEeecchhccCCCCCceEEeeeccc
Confidence            367899999998888999999999999999998766522111111222333321111111  1  11236888887532 


Q ss_pred             -----eEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301          101 -----ETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus       101 -----~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                           .-.+|+|+++.-...|+.||+-+..
T Consensus       396 ~~~~r~lk~lCAEDe~t~~~WltAiRl~Ky  425 (622)
T KOG3751|consen  396 RNKRRFLKMLCAEDEQTRTCWLTAIRLLKY  425 (622)
T ss_pred             cCcccceeeeecccchhHHHHHHHHHHHHH
Confidence                 2368999999999999999997755

>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain

Probab=98.63  E-value=9.9e-07  Score=53.93  Aligned_cols=96  Identities=16%  Similarity=0.133  Sum_probs=69.8

Q ss_pred             ceEEEEEEeCCCCCCc-eeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEEEE
Q 032301           28 ERSGWLTKQGEYIKTW-RRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFI  106 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w-~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~  106 (143)
                      +++|-|...+...... ++..+.|-++.|.|-...... .-.-...++|.+. .+...++...-+++|.|.++.+++.++
T Consensus         3 i~~G~l~e~~~~~~kp~~rv~~FLfND~Lvva~~~~~~-ky~~~~~~~L~~i-~V~ni~D~~~~kNafki~t~~~s~i~q   80 (100)
T cd01226           3 ILYGELEEFDVETKKPVQRVMLFLLNDRLIVGNINAAG-KYVMESTYSLNSV-AVVNVKDRENAKKVLKLLIFPESRIYQ   80 (100)
T ss_pred             EEcCcEEEechhhCCccceEEEEEeccEEEEEEecccc-eEEEEEEEehHHe-EEEecCCCcCcCceEEEEeCCccEEEE
Confidence            5667776665443333 345578888888776543311 3345678889986 444555555669999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHH
Q 032301          107 ADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus       107 a~s~~e~~~W~~al~~~~~  125 (143)
                      |+|.++..+|+..|++|..
T Consensus        81 aes~~~K~eWl~~le~a~~   99 (100)
T cd01226          81 CESARIKTEWFEELEQAKR   99 (100)
T ss_pred             eCCHHHHHHHHHHHHHHhc
Confidence            9999999999999998863

Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.58  E-value=4.5e-08  Score=79.30  Aligned_cols=102  Identities=27%  Similarity=0.548  Sum_probs=78.3

Q ss_pred             CCceEEEEEEeCC-CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEE
Q 032301           26 NPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMY  104 (143)
Q Consensus        26 ~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~  104 (143)
                      .....|+|.++.. ..+.|.++||-..++.+.|+.....   .......+|..|+ |...++...+++||.|.++.+++.
T Consensus       273 ~~~~~~~l~~k~~~~~~tw~r~~f~~q~~~l~~~~r~~~---~~~~~~~dL~~cs-vk~~~~~~drr~CF~iiS~tks~~  348 (785)
T KOG0521|consen  273 GYRMEGYLRKKASNASKTWKRRWFSIQDGQLGYQHRGAD---AENVLIEDLRTCS-VKPDAEQRDRRFCFEIISPTKSYL  348 (785)
T ss_pred             hhhhhhhhhhhcccchhhHHhhhhhhhcccccccccccc---ccccccccchhcc-ccCCcccccceeeEEEecCCcceE
Confidence            4556778887754 4689999999999888888776642   2225666677774 444444346899999999999999


Q ss_pred             EEcCCHHHHHHHHHHHHHHHHhhCCCC
Q 032301          105 FIADSEKEKEDWINSIGRSIVQHSRSV  131 (143)
Q Consensus       105 ~~a~s~~e~~~W~~al~~~~~~~~~~~  131 (143)
                      |+|+|+.+...|+.+|+..+.......
T Consensus       349 lQAes~~d~~~Wi~~i~nsi~s~l~~~  375 (785)
T KOG0521|consen  349 LQAESEKDCQDWISALQNSILSALNSA  375 (785)
T ss_pred             EecCchhHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999998766443

>PLN02866 phospholipase D

Probab=98.57  E-value=1.8e-06  Score=71.19  Aligned_cols=100  Identities=16%  Similarity=0.374  Sum_probs=74.6

Q ss_pred             CCCceEEEEEEe-----CC------C---------CCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceE-----
Q 032301           25 SNPERSGWLTKQ-----GE------Y---------IKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCL-----   79 (143)
Q Consensus        25 ~~~~~~G~L~k~-----~~------~---------~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~-----   79 (143)
                      +...+||++.++     .+      +         ...|+++|++|++..|.|.+++.   ...++.++.++...     
T Consensus       180 g~K~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~~p~---~~~~~~v~lfD~~~~~~~~  256 (1068)
T PLN02866        180 GPKLKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLEDPF---DAKPLDIIVFDVLPASNGN  256 (1068)
T ss_pred             CCCcceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEecCC---CCceeEEEEEecccccccC
Confidence            457789999988     11      1         13699999999999999998876   44577777665211     


Q ss_pred             ---Eee---cCcccCCCcceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301           80 ---TVK---GAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus        80 ---~v~---~~~~~~~~~~~f~i~~~~~~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                         .+.   ...+....+++|.|.+.++.+.|.|.|...+.+|+.+|+.+....
T Consensus       257 ~~~~~~~~~~~k~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~ai~~~~~~~  310 (1068)
T PLN02866        257 GEGQISLAKEIKERNPLRFGFKVTCGNRSIRLRTKSSAKVKDWVAAINDAGLRP  310 (1068)
T ss_pred             CCcceeecccccccCCCcceEEEecCceEEEEEECCHHHHHHHHHHHHHHHhcc
Confidence               011   111122447899999999999999999999999999999998543

>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]

Probab=98.49  E-value=3.8e-07  Score=70.42  Aligned_cols=106  Identities=19%  Similarity=0.234  Sum_probs=79.6

Q ss_pred             CccccCCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCC--CCCCcceEEeCCceEEeecCcccCCCcceEEEE
Q 032301           20 STEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVT--RASKPRGVIPVASCLTVKGAEDVLNKQYAFELS   97 (143)
Q Consensus        20 ~~~~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~--~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~   97 (143)
                      -+++....+++|.+.|.....+..+.||++|.++.+.|.+.....  ....+...+.+.++...+  .+....++.|.+.
T Consensus       265 IV~PsreLiKEG~l~Kis~k~~~~qeRylfLFNd~~lyc~~r~~~~~~k~~~r~~~s~~~~~v~~--~~~~~~~~tF~~~  342 (623)
T KOG4424|consen  265 IVSPSRELIKEGQLQKISAKNGTTQERYLFLFNDILLYCKPRKRLPGSKYEVRARCSISHMQVQE--DDNEELPHTFILT  342 (623)
T ss_pred             ccCcHHHHhhccceeeeeccCCCcceeEEEEehhHHHhhhhhhhcccceeccceeeccCcchhcc--cccccCCceEEEe
Confidence            356666789999999998767889999999999888887654310  012233444555543322  2333568999999


Q ss_pred             eCCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301           98 TRTETMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus        98 ~~~~~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      .+.+.+-|+|.|.++..+|+++|+.+|..+
T Consensus       343 G~~r~vel~a~t~~ek~eWv~~I~~~Id~~  372 (623)
T KOG4424|consen  343 GKKRGVELQARTEQEKKEWVQAIQDAIDKH  372 (623)
T ss_pred             cccceEEeecCchhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998854

>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis

Probab=98.47  E-value=1.1e-05  Score=51.58  Aligned_cols=97  Identities=19%  Similarity=0.278  Sum_probs=63.1

Q ss_pred             eEEEEEEeCCC-----CCCceeEEEEEECCe--EEEEecCCCCC--CCCcceEEeCCceEEeecCccc--CC----Ccce
Q 032301           29 RSGWLTKQGEY-----IKTWRRRWFVLKQGK--LFWFKESTVTR--ASKPRGVIPVASCLTVKGAEDV--LN----KQYA   93 (143)
Q Consensus        29 ~~G~L~k~~~~-----~~~w~~r~~vL~~~~--l~~~~~~~~~~--~~~~~~~i~l~~~~~v~~~~~~--~~----~~~~   93 (143)
                      .-.||+|-...     .....+|||.|....  |+++.......  .......+.|..+..|......  ..    ..++
T Consensus        11 ~G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~s   90 (123)
T PF12814_consen   11 IGEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKS   90 (123)
T ss_pred             cccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceE
Confidence            34677775432     247899999998754  45544322100  1112345666665555433211  11    3578


Q ss_pred             EEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301           94 FELSTRTETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus        94 f~i~~~~~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                      |.|.++++++-|.|.+.++.+-|+.+|+..+.
T Consensus        91 i~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~~  122 (123)
T PF12814_consen   91 IIIVTPDRSLDLTAPSRERHEIWFNALRYLLQ  122 (123)
T ss_pred             EEEEcCCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence            88899999999999999999999999987654

During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex

>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]

Probab=98.44  E-value=6.8e-08  Score=75.48  Aligned_cols=109  Identities=22%  Similarity=0.412  Sum_probs=84.3

Q ss_pred             CCceEEEEEEeCC-CCCCceeEEEEEECCeEEEEecCCC-CCCCCcceEEeCCceEEeec--CcccCCCcceEEEEeCCe
Q 032301           26 NPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTV-TRASKPRGVIPVASCLTVKG--AEDVLNKQYAFELSTRTE  101 (143)
Q Consensus        26 ~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~~~~~~~-~~~~~~~~~i~l~~~~~v~~--~~~~~~~~~~f~i~~~~~  101 (143)
                      ...++|||+..|. ..+.|++|||||....-+.|.-+.. .+...|...+.|+|.++...  .+...++++-|.....+.
T Consensus       463 nmkhsgylyaig~nvwkrwkkrffvlvqvsqytfamcsyrekkaepqel~qldgytvdytdp~pglqgg~~ffnavkegd  542 (1218)
T KOG3543|consen  463 NMKHSGYLYAIGRNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAVKEGD  542 (1218)
T ss_pred             ccccceeehhhhhHHHHHhHhhEEEEEEhhhhhhHhhhhhhcccChHHHhhccCeeeccCCCCCccccchHHHHHhccCc
Confidence            4567899998865 3478999999998765555554442 12567999999999765433  233456688898888899


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCC
Q 032301          102 TMYFIADSEKEKEDWINSIGRSIVQHSRSVTDS  134 (143)
Q Consensus       102 ~~~~~a~s~~e~~~W~~al~~~~~~~~~~~~~~  134 (143)
                      +..|..++++|..-|+.|+-+|.-+..++.++.
T Consensus       543 tvifasddeqdr~lwvqamyratgqsykpvpp~  575 (1218)
T KOG3543|consen  543 TVIFASDDEQDRHLWVQAMYRATGQSYKPVPPK  575 (1218)
T ss_pred             eEEeccCchhhhhHHHHHHHHhhCCcCCCCCch
Confidence            999999999999999999999999888776655

>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]

Probab=98.21  E-value=1.9e-06  Score=67.98  Aligned_cols=97  Identities=28%  Similarity=0.560  Sum_probs=78.5

Q ss_pred             CceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEEEE
Q 032301           27 PERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFI  106 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~  106 (143)
                      ..+.|++.+.+...+.|++||||++...+.||+.+... ...|.+.++++.......    .+..+.|++++....++|-
T Consensus       249 ~ekSgy~~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~-~~~p~s~~d~~s~~~~~~----~~~s~~fqli~~t~~~~~~  323 (936)
T KOG0248|consen  249 MEKSGYWTQLTSRIKSLKRRYVVFKNGQISFYRKHNNR-DEEPASKIDIRSVTKLEQ----QGAAYAFQLITSTDKMNFM  323 (936)
T ss_pred             hhcccchhcchHHHHHHHhHheeeccceEEEEEcCCCc-cccccCcccccccceeec----cchhHHhhhhhhceeEEEe
Confidence            45678888877677899999999999999999988753 456778888875333322    2457899999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHhhC
Q 032301          107 ADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus       107 a~s~~e~~~W~~al~~~~~~~~  128 (143)
                      ++++.-..+|++.|+.++....
T Consensus       324 ~~s~~lt~dw~~iL~~~iKv~~  345 (936)
T KOG0248|consen  324 TESERTTHDWVTILSAAIKATT  345 (936)
T ss_pred             ccChhhhhhhHHHHHHHHHHHh
Confidence            9999999999999999887433

>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain

Probab=98.15  E-value=5.8e-05  Score=48.12  Aligned_cols=93  Identities=19%  Similarity=0.291  Sum_probs=54.4

Q ss_pred             ceEEEEEEeCCC--------CCCceeEEEEEECCeEEEEecCCCCC----CCCcceEEeCCceEEeecCc----ccCCCc
Q 032301           28 ERSGWLTKQGEY--------IKTWRRRWFVLKQGKLFWFKESTVTR----ASKPRGVIPVASCLTVKGAE----DVLNKQ   91 (143)
Q Consensus        28 ~~~G~L~k~~~~--------~~~w~~r~~vL~~~~l~~~~~~~~~~----~~~~~~~i~l~~~~~v~~~~----~~~~~~   91 (143)
                      ++.|.|......        ...-+.+|+.|..+.|.|.+.+....    +..+...+.+..+.......    .....+
T Consensus         4 vK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~~~~~~~~   83 (125)
T cd01221           4 VKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGSTFVVFDYAPRSFLRVEKIEPDNQKIPLGSNLVGRP   83 (125)
T ss_pred             EEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCCeEEEEeeccccceEEeecccccccccccccccCCC
Confidence            466777654211        11356789999999999987664210    01122222222211110000    001347


Q ss_pred             ceEEEEe------CCeEEEEEcCCHHHHHHHHHHH
Q 032301           92 YAFELST------RTETMYFIADSEKEKEDWINSI  120 (143)
Q Consensus        92 ~~f~i~~------~~~~~~~~a~s~~e~~~W~~al  120 (143)
                      |.|+|..      ....+.|+|+|+.|+.+|+.||
T Consensus        84 ~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al  118 (125)
T cd01221          84 NLFLLTLLRNADDKQAELLLSADSQSDRERWLSAL  118 (125)
T ss_pred             ceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhc
Confidence            8999963      2267999999999999999998

Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]

Probab=98.12  E-value=4.9e-07  Score=72.41  Aligned_cols=95  Identities=24%  Similarity=0.473  Sum_probs=76.9

Q ss_pred             eEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeec-CcccCCCcceEEEEeCCeEEEEEc
Q 032301           29 RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKG-AEDVLNKQYAFELSTRTETMYFIA  107 (143)
Q Consensus        29 ~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~-~~~~~~~~~~f~i~~~~~~~~~~a  107 (143)
                      ..|+|..+=.....|++.|+|.+.-.|++||+-+   +..++.+++|-+.++-.+ .++...+.++|.+...+..|+|.|
T Consensus       926 Lsg~LlrkfknssgwqkLwvvft~fcl~fyKS~q---D~~~laslPlLgysvs~P~~~d~i~K~~vfkl~fk~hvyffra 1002 (1036)
T KOG3531|consen  926 LSGYLLRKFKNSSGWQKLWVVFTNFCLFFYKSHQ---DSEPLASLPLLGYSVSIPAEPDPIQKDYVFKLKFKSHVYFFRA 1002 (1036)
T ss_pred             hhHHHHHHhhccccceeeeeeecceeeEeecccc---cccccccccccccccCCCCCCCCcchhheeeeehhhhHHHHhh
Confidence            4566655534456899999999999999999998   677899999988654433 334567789999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q 032301          108 DSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus       108 ~s~~e~~~W~~al~~~~~~  126 (143)
                      ++..-.++|+..|+.+..-
T Consensus      1003 es~yt~~rw~evi~~a~~s 1021 (1036)
T KOG3531|consen 1003 ESYYTFERWMEVITDAPSS 1021 (1036)
T ss_pred             hhhhhhhhHHHHhhcCCcc
Confidence            9999999999999766543

>cd01223 PH_Vav Vav pleckstrin homology (PH) domain

Probab=98.00  E-value=0.00017  Score=45.25  Aligned_cols=101  Identities=13%  Similarity=0.203  Sum_probs=65.7

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCC---CCcceEEeCCceEEeecC-ccc----CCCcceEEEE
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRA---SKPRGVIPVASCLTVKGA-EDV----LNKQYAFELS   97 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~---~~~~~~i~l~~~~~v~~~-~~~----~~~~~~f~i~   97 (143)
                      .+..-|.|..+....+.-+.||..|-+..+.+.+.......   -.-...+.|....+.... .+.    ..-.|+|.|.
T Consensus         3 R~~~DGelk~k~~~~~k~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~   82 (116)
T cd01223           3 RPLLDGEVRIKASEDQKTKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLA   82 (116)
T ss_pred             ccccCCceEEeEeccCCCceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEE
Confidence            34556666666544455679999999999999886542111   112234444543222211 111    1347889999


Q ss_pred             eCC--eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           98 TRT--ETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        98 ~~~--~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      ...  ..+.|+|.|+++...|+.+|..|+..
T Consensus        83 ~~~~~~~~~f~~Ktee~K~kWm~al~~a~sn  113 (116)
T cd01223          83 HKQGKTGFTFYFKTEHLRKKWLKALEMAMSN  113 (116)
T ss_pred             ecCCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence            866  46999999999999999999998864

Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]

Probab=97.98  E-value=1.3e-05  Score=59.00  Aligned_cols=116  Identities=18%  Similarity=0.267  Sum_probs=82.5

Q ss_pred             hhhhHHhcccccCCCCCCccc-------cCCCceEEEEEEeCC---CCCCceeEEEEEECCeEEEEecCCCCCCCCcceE
Q 032301            3 SLWRAISGQTNQLSDYDSTEF-------WSNPERSGWLTKQGE---YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGV   72 (143)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~G~L~k~~~---~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~   72 (143)
                      +=|..++..+........+..       ...+++.||...+-.   ....++++|..|+|..++.|..+.       ..+
T Consensus       250 ~dWL~ait~Ni~~LT~~nmK~~Nrnf~v~~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPP-------v~t  322 (505)
T KOG3549|consen  250 SDWLKAITDNIVGLTHLNMKLYNRNFAVGEQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPP-------VNT  322 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCccceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCC-------cch
Confidence            457777777766554433322       224789999987632   335789999999999999998875       333


Q ss_pred             EeCCceEE-----------eecCcccCCCcceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301           73 IPVASCLT-----------VKGAEDVLNKQYAFELSTRT-ETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus        73 i~l~~~~~-----------v~~~~~~~~~~~~f~i~~~~-~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                      .++.++..           +...+-...+++||.|...+ +..||..+...|+..|-++++.|+.
T Consensus       323 ~dw~rAe~ty~vye~mfki~Kdsd~~D~R~~CF~~qs~~ge~~yfsVEl~seLa~wE~sfq~Atf  387 (505)
T KOG3549|consen  323 ADWSRAEVTYKVYETMFKIVKDSDTVDSRQHCFLLQSSGGEPRYFSVELRSELARWENSFQAATF  387 (505)
T ss_pred             hhhhhhhhhHHHHHHHHHHhccccccccccceEEEEcCCCCceEEEEehhhHHHHHHHHHhhHHh
Confidence            34433322           11222235789999999876 7899999999999999999998876

>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain

Probab=97.97  E-value=0.00046  Score=43.49  Aligned_cols=96  Identities=16%  Similarity=0.258  Sum_probs=60.2

Q ss_pred             CceEEEEEEeCC---CCCCceeEEEEEECCeEEEEecCCCCCC-CCc----ceEEeCCceEEeecCcccCCCcceEEEE-
Q 032301           27 PERSGWLTKQGE---YIKTWRRRWFVLKQGKLFWFKESTVTRA-SKP----RGVIPVASCLTVKGAEDVLNKQYAFELS-   97 (143)
Q Consensus        27 ~~~~G~L~k~~~---~~~~w~~r~~vL~~~~l~~~~~~~~~~~-~~~----~~~i~l~~~~~v~~~~~~~~~~~~f~i~-   97 (143)
                      .+++|.+..-.+   ..+.-+.|.+.|-...|.+.+....... ..+    ...|.++.. .++...+  +.+..|.|. 
T Consensus         5 Ll~Q~~f~v~~~~~~~~~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l-~l~e~v~--gd~~kF~i~~   81 (114)
T cd01232           5 LLLQDTFQVWDPKAGLIQKGRERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKSKLQVSKM-GLTEHVE--GDPCRFALWS   81 (114)
T ss_pred             eEEEccEEEEeCCccccCCCceeEEEEeeceEEEEEEeccCCCCCceeEEEecceeeeee-EeEEccC--CCCceEEEEe
Confidence            455555443321   2345678888898888888876542111 112    255666664 3333332  334556664 


Q ss_pred             -eCC---eEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301           98 -TRT---ETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus        98 -~~~---~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                       ++.   .+|.++|.|.+..+.|+..|+.++.
T Consensus        82 ~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~  113 (114)
T cd01232          82 GDPPISDNRIILKANSQETKQEWVKKIREILQ  113 (114)
T ss_pred             CCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence             443   6899999999999999999998764

Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=97.94  E-value=6.6e-05  Score=58.67  Aligned_cols=100  Identities=19%  Similarity=0.313  Sum_probs=59.2

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCe-----EEEEecCCCC---------CCCCcceEE--eCCceEEeecCc-cc
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGK-----LFWFKESTVT---------RASKPRGVI--PVASCLTVKGAE-DV   87 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~-----l~~~~~~~~~---------~~~~~~~~i--~l~~~~~v~~~~-~~   87 (143)
                      ...+++|.+.+.+.. ..|++||+++.+..     +.--..++..         ++..-...|  +++..+.+-+.+ .+
T Consensus       371 ~~~~~~g~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (496)
T PTZ00283        371 GLTLYEGIVKKQSSD-LSWKRRYLCIRGELEKGETLTVDVAPKFKSLDLVLAVSKDTLEQQCISTPFSDLEDVFPVPSKY  449 (496)
T ss_pred             CceeeeeEEecccCC-cccceeEEEEeeecccCceeecCCCccchhhhhhhhhhhhhhhhhcccCchhhhcccccccHHh
Confidence            346788998887654 35999999987432     1110010000         000000111  222222222222 22


Q ss_pred             C--CCcceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301           88 L--NKQYAFELSTRT-ETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus        88 ~--~~~~~f~i~~~~-~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                      .  ..+|+|.+.+.. +.+.|+|.+.+++..|+++|+.++-
T Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  490 (496)
T PTZ00283        450 TGSNAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLG  490 (496)
T ss_pred             hCCCCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence            2  368999998765 8899999999999999999998764

>PF15406 PH_6: Pleckstrin homology domain

Probab=97.86  E-value=9.9e-05  Score=45.46  Aligned_cols=65  Identities=18%  Similarity=0.407  Sum_probs=50.2

Q ss_pred             EECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEEEEcCCHHHHHHHHHHHH
Q 032301           50 LKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIG  121 (143)
Q Consensus        50 L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~a~s~~e~~~W~~al~  121 (143)
                      -+|..|++|....+  ...|.++|+|..++.+..     ...+-|.+...+..+.|.|.|..|...|+.+|+
T Consensus        46 qTGKGLLF~~K~~d--ka~P~GiinLadase~~~-----~g~~kF~f~~~G~khtF~A~s~aERD~Wv~~lk  110 (112)
T PF15406_consen   46 QTGKGLLFFSKAED--KASPSGIINLADASEPEK-----DGSNKFHFKIKGHKHTFEAASAAERDNWVAQLK  110 (112)
T ss_pred             ccCceEEEEecccc--ccCCcceEehhhcccccc-----CCCceEEEEeCCceeeeecCCHHHhccHHHHhh
Confidence            35777877765332  557999999988655433     345677777788889999999999999999985

>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain

Probab=97.84  E-value=0.00016  Score=43.92  Aligned_cols=79  Identities=19%  Similarity=0.393  Sum_probs=51.3

Q ss_pred             CCCCceeEEEEEE----CCeEEEEecCCCCCCCCcceEEeCC------ceEEeecCcccCCCcceEEEEeCC-eEEEEEc
Q 032301           39 YIKTWRRRWFVLK----QGKLFWFKESTVTRASKPRGVIPVA------SCLTVKGAEDVLNKQYAFELSTRT-ETMYFIA  107 (143)
Q Consensus        39 ~~~~w~~r~~vL~----~~~l~~~~~~~~~~~~~~~~~i~l~------~~~~v~~~~~~~~~~~~f~i~~~~-~~~~~~a  107 (143)
                      ....|++.-.+|.    |..+.+|-.... +...|...+...      .|+..+.    ..+.++|.|...+ -.|+|.+
T Consensus        17 ~~~~WqkcRl~L~~~~gg~~le~~~~~pP-Kssrpk~~v~C~~I~EvR~tt~LEm----PD~~nTFvLK~~~~~eyI~Ea   91 (107)
T cd01231          17 SGARWQRGRLVLRKAVGGYMLEFYLPLPP-KSSKPKLQVACSSISEVRECTRLEM----PDNLYTFVLKVDDNTDIIFEV   91 (107)
T ss_pred             CccccceeeEEEEecCCCceEEEEccCCC-CCCCCccccchhhhhhhhhcccccc----cCcccEEEEEecCCceEEEEc
Confidence            3458999888886    344555544111 134455444433      3333322    3467899998766 4689999


Q ss_pred             CCHHHHHHHHHHHHH
Q 032301          108 DSEKEKEDWINSIGR  122 (143)
Q Consensus       108 ~s~~e~~~W~~al~~  122 (143)
                      .|.++++.|+..|+.
T Consensus        92 ~d~~q~~SWla~Ir~  106 (107)
T cd01231          92 GDEQQLNSWLAELRY  106 (107)
T ss_pred             CCHHHHHHHHHHHhc
Confidence            999999999999974

LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.

>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]

Probab=97.78  E-value=5.5e-05  Score=57.79  Aligned_cols=94  Identities=27%  Similarity=0.504  Sum_probs=70.9

Q ss_pred             CceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEEEE
Q 032301           27 PERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFI  106 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~  106 (143)
                      +..+|.|.+-......|+.||++|..+.|.||+++..+ .-.+.+.|.|..+......    .....|-|.......++.
T Consensus        24 ~e~~G~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~-~hGcRgsi~l~ka~i~ahE----fDe~rfdIsvn~nv~~lr   98 (611)
T KOG1739|consen   24 VERCGVLSKWTNYIHGWQDRYVVLKNGALSYYKSEDET-EHGCRGSICLSKAVITAHE----FDECRFDISVNDNVWYLR   98 (611)
T ss_pred             hhhcceeeeeecccccccceEEEEcccchhhhhhhhhh-hcccceeeEeccCCccccc----chhheeeeEeccceeeeh
Confidence            34455555554445689999999999999999988643 4457889998875332221    335788888888889999


Q ss_pred             cCCHHHHHHHHHHHHHHHH
Q 032301          107 ADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus       107 a~s~~e~~~W~~al~~~~~  125 (143)
                      +.+..+.+.|+.+|.-...
T Consensus        99 a~~~~hr~~w~d~L~wmk~  117 (611)
T KOG1739|consen   99 AQDPDHRQQWIDALEWMKT  117 (611)
T ss_pred             hcCcHHHHHHHHHHHHHhh
Confidence            9999999999999986655

>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain

Probab=97.77  E-value=0.00038  Score=41.98  Aligned_cols=86  Identities=17%  Similarity=0.239  Sum_probs=60.4

Q ss_pred             CceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCC---CC-CCCCcceEEeCCceEEeecCcccCCCcceEEEE-eCCe
Q 032301           27 PERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKEST---VT-RASKPRGVIPVASCLTVKGAEDVLNKQYAFELS-TRTE  101 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~---~~-~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~-~~~~  101 (143)
                      .+.+|+|.+..  .+.-+.|.|.|.++.|.|-+-..   .+ ..-...-.|+|.... +...+        |.+. ++.+
T Consensus         3 Lv~eg~lvel~--~~~rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~-~~~~~--------~~~~~~~~K   71 (96)
T cd01228           3 LVKDSFLVELV--EGSRKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLS-FPSEP--------FRIHNKNGK   71 (96)
T ss_pred             ccccceeeeeh--hCCCcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHhe-ecchh--------hhccccCCc
Confidence            46789998774  34568888999999888876532   11 123455678888743 32221        4443 4679


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHH
Q 032301          102 TMYFIADSEKEKEDWINSIGRS  123 (143)
Q Consensus       102 ~~~~~a~s~~e~~~W~~al~~~  123 (143)
                      +|.|+|.|..|..+|+.+|+..
T Consensus        72 Sf~~~asS~~Er~eW~~hI~~~   93 (96)
T cd01228          72 SYTFLLSSDYERSEWRESIQKL   93 (96)
T ss_pred             eEEEEecCHHHHHHHHHHHHHH
Confidence            9999999999999999999764

BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]

Probab=97.68  E-value=0.00018  Score=56.32  Aligned_cols=96  Identities=20%  Similarity=0.410  Sum_probs=67.7

Q ss_pred             CCCceEEEEEEe--CCCCCCceeEEEEEECCeE-EEE---ecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEe
Q 032301           25 SNPERSGWLTKQ--GEYIKTWRRRWFVLKQGKL-FWF---KESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELST   98 (143)
Q Consensus        25 ~~~~~~G~L~k~--~~~~~~w~~r~~vL~~~~l-~~~---~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~   98 (143)
                      ....++|||+.+  ......|-+.||+....+- ...   ..... .+..+..++.|..|+.-. . +...+++||-|..
T Consensus       263 ~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g-~k~g~~~~~~lKsC~RRk-t-dSIdKRFCFDve~  339 (812)
T KOG1451|consen  263 TPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQKTG-TKMGQTATFKLKSCSRRK-T-DSIDKRFCFDVEV  339 (812)
T ss_pred             CCcccceeeeehhhhhccchhhhheeEeecccceEEEeecccCCC-CcCCCcceEEehhhccCc-c-cccccceeeeeee
Confidence            346899999986  3455799999999976532 222   22221 134466777788875432 2 2346789999998


Q ss_pred             CC--eEEEEEcCCHHHHHHHHHHHHHH
Q 032301           99 RT--ETMYFIADSEKEKEDWINSIGRS  123 (143)
Q Consensus        99 ~~--~~~~~~a~s~~e~~~W~~al~~~  123 (143)
                      ..  .++.++|-|+++...|+.|+--+
T Consensus       340 ~erpgviTmQALSE~drrlWmeAMDG~  366 (812)
T KOG1451|consen  340 EERPGVITMQALSEKDRRLWMEAMDGA  366 (812)
T ss_pred             cccCCeeehHhhhhhHHHHHHHHhcCC
Confidence            76  67999999999999999998433

>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]

Probab=97.64  E-value=4.5e-05  Score=61.84  Aligned_cols=96  Identities=26%  Similarity=0.453  Sum_probs=78.8

Q ss_pred             cCCCceEEEEEEeCC-CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeE
Q 032301           24 WSNPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTET  102 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~  102 (143)
                      ...+++.|||.|... ..-.++++|..+.+..+.||.+++   ...+.+.+++...+.|..     .+...|++.+..++
T Consensus        84 isp~~~~gwldk~~pqg~~~~qkr~vkf~~~s~~yf~~~k---~py~k~~i~va~is~v~~-----~gd~kfevitn~r~  155 (1186)
T KOG1117|consen   84 ISPVIKSGWLDKLSPQGEYPFQKRWVKFDGSSLEYFLSPK---DPYSKGPIPVAAISAVRN-----FGDNKFEVITNQRT  155 (1186)
T ss_pred             cCchhhcchhhccCcCcccccCccceecCCCCccccCCCC---CCCCCCceeeehhhhhhh-----ccCceEEEEecceE
Confidence            345889999998754 345689999999999999999987   455677888776655543     34578999999999


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301          103 MYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus       103 ~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      +.|.+++..+...|+.+++.+....
T Consensus       156 fvfr~e~~~~r~~w~s~l~s~~~~Q  180 (1186)
T KOG1117|consen  156 FVFRQESEGERFIWVSPLQSALKEQ  180 (1186)
T ss_pred             EEEecCCcccceeeechhhhcchhh
Confidence            9999999999999999999887754

>PF15408 PH_7: Pleckstrin homology domain

Probab=97.64  E-value=3.9e-05  Score=45.16  Aligned_cols=90  Identities=14%  Similarity=0.306  Sum_probs=58.9

Q ss_pred             EEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEe----ecCccc---CCCcceEEEEeCCe-
Q 032301           30 SGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTV----KGAEDV---LNKQYAFELSTRTE-  101 (143)
Q Consensus        30 ~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v----~~~~~~---~~~~~~f~i~~~~~-  101 (143)
                      +|||+..-.  ..-++||.+|++..+.+|.++.    ...+.+..|+.....    +..+..   .-..++|....+++ 
T Consensus         1 EGYLY~~E~--~si~rRF~~L~~K~~~~~~~KG----G~~L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G~L~~~~~~~   74 (104)
T PF15408_consen    1 EGYLYRDED--SSIQRRFVMLRSKQFNMYEDKG----GQYLCSFQLSSSVVSHPMVNFSQAVPNLGINAFGFLMYSPSRR   74 (104)
T ss_pred             CCeEEEecc--chHHHHHHhhhhceeEEecccC----CceeeeeehhhhhhhcccccccccCCCCCeeEEEEEEecCCcc
Confidence            588887632  3678999999999999998875    235667777652111    111100   11134666777764 


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHHH
Q 032301          102 TMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus       102 ~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                      ..-+.|+|.+.++.|+++++.-..
T Consensus        75 ~~~~FA~S~~~~~~Wi~~mN~~s~   98 (104)
T PF15408_consen   75 HVQCFASSKKVCQSWIQVMNSPSF   98 (104)
T ss_pred             hhhhhhhHHHHHHHHHHHhcChhh
Confidence            455669999999999999965443

>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]

Probab=97.63  E-value=0.00025  Score=57.72  Aligned_cols=94  Identities=19%  Similarity=0.375  Sum_probs=70.4

Q ss_pred             CCceEEEEEEeCC----------CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCc-cc---CCCc
Q 032301           26 NPERSGWLTKQGE----------YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE-DV---LNKQ   91 (143)
Q Consensus        26 ~~~~~G~L~k~~~----------~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~-~~---~~~~   91 (143)
                      ...++|+|+....          .+-...++||||.|+.|+||.++.   ...|.+.|.+.....+...+ +.   ..-.
T Consensus       491 s~~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~---S~tP~~lI~~~Eivclav~~pd~~pn~~~~  567 (1186)
T KOG1117|consen  491 STFLCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEK---STTPNGLININEIVCLAVHPPDTYPNTGFI  567 (1186)
T ss_pred             cccccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcC---CCCCCceeeccceEEEeecCCCCCCCcCce
Confidence            3455699988621          123568999999999999999987   55699999998744433222 22   2336


Q ss_pred             ceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHH
Q 032301           92 YAFELSTRT-ETMYFIADSEKEKEDWINSIGR  122 (143)
Q Consensus        92 ~~f~i~~~~-~~~~~~a~s~~e~~~W~~al~~  122 (143)
                      +.|.|..+. +.+.|.+++.+++..|..||-+
T Consensus       568 f~fE~~l~~er~~~fgle~ad~l~~wt~aiaK  599 (1186)
T KOG1117|consen  568 FIFEIYLPGERVFLFGLETADALRKWTEAIAK  599 (1186)
T ss_pred             eEEEEeecccceEEeecccHHHHHHHHHHHHH
Confidence            889999876 7788999999999999999843

>PF15404 PH_4: Pleckstrin homology domain

Probab=97.37  E-value=0.0037  Score=42.61  Aligned_cols=53  Identities=25%  Similarity=0.373  Sum_probs=38.6

Q ss_pred             eEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCC--------CCCcceEEeCCceEEe
Q 032301           29 RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTR--------ASKPRGVIPVASCLTV   81 (143)
Q Consensus        29 ~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~--------~~~~~~~i~l~~~~~v   81 (143)
                      +.|.|+.+.+....|+++++||..+.|..|..-....        ......+|+|.+|.+.
T Consensus         1 ~sG~LY~K~~khs~F~~~~vvL~~G~Li~f~~~~Rs~tG~~~~~~~~~~~~tI~L~dcYvY   61 (185)
T PF15404_consen    1 MSGYLYQKPRKHSTFKKYFVVLIPGFLILFQLFKRSRTGFAKPTVHYEHYLTIPLRDCYVY   61 (185)
T ss_pred             CCceeeecCCCCCCceEEEEEEeCCEEEEEEEEeeccCCcccceEEeEeeeeeccCCceEE
Confidence            4699999887778999999999999999998633110        1123357888887654

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=96.71  E-value=0.0025  Score=50.20  Aligned_cols=98  Identities=17%  Similarity=0.397  Sum_probs=66.6

Q ss_pred             CceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcc-----cCCCcceEEEEeCCe
Q 032301           27 PERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAED-----VLNKQYAFELSTRTE  101 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~-----~~~~~~~f~i~~~~~  101 (143)
                      ..++||+..-...-.--++.|--|..+-+..|.+..   ....-..|+|+.+..+.....     ....+|+|.|.+..-
T Consensus       413 ~~kEGWmvHyt~~d~lRkrHYWrldsk~itlfqn~s---~~ryYkeIPLsEIl~v~~~~~~~~vp~~~~phcFEI~T~~~  489 (888)
T KOG4236|consen  413 KLKEGWMVHYTSKDNLRKRHYWRLDSKCITLFQNES---TNRYYKEIPLSEILSVSSNNGFSLVPAGTNPHCFEIRTATT  489 (888)
T ss_pred             hhhcceEEEEechhhhhhhhhheeccceeEeeecCC---CceeEEeecHHHhheeeccCCcccCCCCCCCceEEEEeeeE
Confidence            556888865432112235556667778888888876   344567788888777766542     235589999999984


Q ss_pred             EEEEEcCC------------HHHHHHHHHHHHHHHHhhC
Q 032301          102 TMYFIADS------------EKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus       102 ~~~~~a~s------------~~e~~~W~~al~~~~~~~~  128 (143)
                       .||-.++            ...++.|-.||+.+...-.
T Consensus       490 -vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~alMpV~  527 (888)
T KOG4236|consen  490 -VYFVGENPSSTPGGESGVGLDAAQGWETAIQQALMPVT  527 (888)
T ss_pred             -EEEecCCCCCCccccccccchhhccCchhhhhcccccc
Confidence             4455555            4558999999998877433

>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A

Probab=96.61  E-value=0.015  Score=37.75  Aligned_cols=95  Identities=18%  Similarity=0.265  Sum_probs=42.4

Q ss_pred             ceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCC---CCCcceEEeCCceEEeec---C-----------------
Q 032301           28 ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTR---ASKPRGVIPVASCLTVKG---A-----------------   84 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~---~~~~~~~i~l~~~~~v~~---~-----------------   84 (143)
                      +++|-|.+++.....|..-.+.|-++.|.+-+.....+   -..-...|+|.-. .++.   .                 
T Consensus         2 i~~G~L~Rk~~~~~~~~di~~~LFDh~Lll~K~k~~~k~e~ykV~r~PIPLeLL-~l~~~~d~~~~~~~~~r~s~s~~~~   80 (135)
T PF15405_consen    2 IYKGDLKRKGDNSFNWVDIHVYLFDHYLLLTKPKKVNKREQYKVYRRPIPLELL-VLESMDDPPPQRSIAKRPSSSLISS   80 (135)
T ss_dssp             ---------------S-EEEEEEESSEEEEEEEEEETTEEEEEESS--EEGGG--EEEE--TTTS---------S-----
T ss_pred             ccccccccccccccccceeEEEeeccEEEEEEEEecCCeEEEEEEECCcCHHHe-eeecccCCCcccCcccccccCccCC
Confidence            67899999887767888999999999888877653110   0112223333321 1110   0                 


Q ss_pred             ------------cccCCCcceEEEEeCC---eEEEEEcCCHHHHHHHHHHHHHH
Q 032301           85 ------------EDVLNKQYAFELSTRT---ETMYFIADSEKEKEDWINSIGRS  123 (143)
Q Consensus        85 ------------~~~~~~~~~f~i~~~~---~~~~~~a~s~~e~~~W~~al~~~  123 (143)
                                  ....+..+.|.+.+-+   ..+.|+|+|..+.++|+.+|..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q  134 (135)
T PF15405_consen   81 SSSNSNSPSNPNSSDSKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ  134 (135)
T ss_dssp             --SHHHH--------TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred             ccCCCCccceeeeccCCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence                        0011223455555543   35799999999999999999764

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=96.59  E-value=7.1e-06  Score=61.07  Aligned_cols=83  Identities=24%  Similarity=0.615  Sum_probs=67.0

Q ss_pred             CCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEEEEcCCHHHHHHHHHHH
Q 032301           41 KTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSI  120 (143)
Q Consensus        41 ~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~a~s~~e~~~W~~al  120 (143)
                      ..|++.|||+++..+.||.+.....-....+.++|..|+.+....  ..+.|.|+|.+.+..+.+.+.+..-...|+.|+
T Consensus        33 ~~~~k~~~~~~~~~~~~~~d~~A~~~~~L~~~~~LR~C~~v~e~a--~q~nY~~~i~~~~~~~tL~~~~s~Ir~~~~~A~  110 (593)
T KOG4807|consen   33 SQWKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEYA--VQRNYGFQIHTKDAVYTLSAMTSGIRRNWIEAL  110 (593)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhcccCCccccHHHHHHHHHHH--HHhccceeecccchhhhhHHHHHHHHHHHHHHH
Confidence            479999999999999999887643334456888999987664332  356799999999999999999999999999999


Q ss_pred             HHHHH
Q 032301          121 GRSIV  125 (143)
Q Consensus       121 ~~~~~  125 (143)
                      +..+.
T Consensus       111 ~kT~~  115 (593)
T KOG4807|consen  111 RKTVR  115 (593)
T ss_pred             HhccC
Confidence            85543

>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.42  E-value=0.00038  Score=54.17  Aligned_cols=87  Identities=16%  Similarity=0.261  Sum_probs=58.3

Q ss_pred             CCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeC---CeEEEEEcCCHHHHHHH
Q 032301           40 IKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTR---TETMYFIADSEKEKEDW  116 (143)
Q Consensus        40 ~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~---~~~~~~~a~s~~e~~~W  116 (143)
                      ++.+++.||...+-.+.+|++.... ..+|...|++.+|.+.+..+....+-+.|.|...   +..+|+.|+++++...|
T Consensus       372 ~Kg~kr~f~t~~dl~~~~~~s~~~s-~~ap~~~i~l~gcev~~dV~~~~~k~~i~l~~~~~~~msEi~LRCd~E~QYA~W  450 (664)
T KOG3727|consen  372 LKGYKRYFFTFRDLHLSLYKSSEDS-RGAPAISINLKGCEVTPDVNLSQQKYAIKLLVPTAEGMSEIWLRCDNEQQYARW  450 (664)
T ss_pred             hhhhhhHHHHHHHHHHHHHhhHhhh-cCCCCCchhhcCcccCCccccccccceEEEEeecCCccceeEEecCCHHHHHHH
Confidence            3456666666555444444443322 2568888999988776655554444455555542   36799999999999999


Q ss_pred             HHHHHHHHHhh
Q 032301          117 INSIGRSIVQH  127 (143)
Q Consensus       117 ~~al~~~~~~~  127 (143)
                      +.|.+.|....
T Consensus       451 MAaCrLASKGk  461 (664)
T KOG3727|consen  451 MAACRLASKGK  461 (664)
T ss_pred             HHHhhHhhcCC
Confidence            99998887643

>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]

Probab=96.34  E-value=0.0038  Score=46.91  Aligned_cols=101  Identities=24%  Similarity=0.434  Sum_probs=70.3

Q ss_pred             CCceEEEEEEe--CCCCCCceeEEEEEECCeEEEEecCCCC--CCCCcceEEeCCceEEeecCccc----CCCcceEEEE
Q 032301           26 NPERSGWLTKQ--GEYIKTWRRRWFVLKQGKLFWFKESTVT--RASKPRGVIPVASCLTVKGAEDV----LNKQYAFELS   97 (143)
Q Consensus        26 ~~~~~G~L~k~--~~~~~~w~~r~~vL~~~~l~~~~~~~~~--~~~~~~~~i~l~~~~~v~~~~~~----~~~~~~f~i~   97 (143)
                      ++.+-|||.++  ++....|++.+++|+...+.+|.+-...  ....|..+.+|---..|-..+..    .+....|.+.
T Consensus       291 evkHiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~keaws~P~~~ypLvaTRLvhsg~~~~s~~~g~~lsFa~R  370 (506)
T KOG3551|consen  291 EVKHIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTKEAWSRPRHTYPLVATRLVHSGSGKGSVIKGLTLSFATR  370 (506)
T ss_pred             chhhhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhHHHhcChhhhhhhhhhhheecCCCCCCCcCCceEEEEEe
Confidence            67889999887  3455789999999999999999876532  13457777776542222211111    1123578887


Q ss_pred             eCC----eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           98 TRT----ETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        98 ~~~----~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      +..    +++.|..++..|+..|...|-.-...
T Consensus       371 tGTrqGV~thlfrvEThrdLa~WtRslVqGch~  403 (506)
T KOG3551|consen  371 TGTRQGVETHLFRVETHRELAAWTRSLVQGCHE  403 (506)
T ss_pred             cccccceEEEEEEeccHHHHHHHHHHHHHHHHH
Confidence            764    67999999999999999988665543

>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain

Probab=96.30  E-value=0.15  Score=33.01  Aligned_cols=83  Identities=14%  Similarity=0.275  Sum_probs=54.1

Q ss_pred             CceeEEEEEECCeEEEEecCCCCCC--CCc----ceEEeCCceEEeecCcccCCCcceEEEEeCC--eEEEEEcCCHHHH
Q 032301           42 TWRRRWFVLKQGKLFWFKESTVTRA--SKP----RGVIPVASCLTVKGAEDVLNKQYAFELSTRT--ETMYFIADSEKEK  113 (143)
Q Consensus        42 ~w~~r~~vL~~~~l~~~~~~~~~~~--~~~----~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~--~~~~~~a~s~~e~  113 (143)
                      .-+.|++.|-...+.+.+.......  ..|    ...|.++.. .+....  .+.+..|.|-...  ..|.++|.|.+..
T Consensus        28 K~~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~l-glte~v--~gd~~kFeiw~~~~~~~yilqA~t~e~K  104 (133)
T cd01227          28 KPMQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAV-GITENV--KGDTKKFEIWYNAREEVYILQAPTPEIK  104 (133)
T ss_pred             CCceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecc-cccccC--CCCccEEEEEeCCCCcEEEEEcCCHHHH
Confidence            3467889999988888876542111  112    233444432 222211  2336677777654  6799999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 032301          114 EDWINSIGRSIVQH  127 (143)
Q Consensus       114 ~~W~~al~~~~~~~  127 (143)
                      ..|+..|+..+...
T Consensus       105 ~~Wv~~I~~iL~~Q  118 (133)
T cd01227         105 AAWVNEIRKVLTSQ  118 (133)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887754

Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain

Probab=96.20  E-value=0.1  Score=32.75  Aligned_cols=74  Identities=24%  Similarity=0.487  Sum_probs=45.9

Q ss_pred             eeEEEEEEC--CeEEEEecCCCCCCCCcceEEeCCceEEeecCccc-------------CCCcceEEEEeCC----eEEE
Q 032301           44 RRRWFVLKQ--GKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDV-------------LNKQYAFELSTRT----ETMY  104 (143)
Q Consensus        44 ~~r~~vL~~--~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~-------------~~~~~~f~i~~~~----~~~~  104 (143)
                      +++.|.|..  ..++|.....     .....++|..+..+......             .....+|.|....    +.+.
T Consensus        22 ~~~~f~ld~~~~~l~W~~~~~-----~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~fTIiy~~~~~~k~L~   96 (115)
T cd01248          22 RRRLFRLDEKGFFLYWKDEGK-----KEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERCFTIVYGTDLNLKSLD   96 (115)
T ss_pred             eeEEEEEcCCCcEEEEeCCCC-----ccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccEEEEEECCCCCeeEEE
Confidence            567777753  4444443221     13455666654444322100             1335789988765    4799


Q ss_pred             EEcCCHHHHHHHHHHHHH
Q 032301          105 FIADSEKEKEDWINSIGR  122 (143)
Q Consensus       105 ~~a~s~~e~~~W~~al~~  122 (143)
                      |-|+|.++++.|+..|+.
T Consensus        97 lVA~s~~~a~~W~~gL~~  114 (115)
T cd01248          97 LVAPSEEEAKTWVSGLRK  114 (115)
T ss_pred             EEECCHHHHHHHHHHHhh
Confidence            999999999999999863

Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=96.19  E-value=0.0023  Score=50.26  Aligned_cols=36  Identities=28%  Similarity=0.541  Sum_probs=30.8

Q ss_pred             ceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301           92 YAFELSTRT-ETMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus        92 ~~f~i~~~~-~~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      .+|.|+... .++.|.|.+.+|...|+.||+..|.+.
T Consensus       446 e~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIlaS  482 (749)
T KOG0705|consen  446 ECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQILAS  482 (749)
T ss_pred             ceEEEeccccchhhhhhcchhhHHHHHHHHHHHHHHH
Confidence            378888754 778999999999999999999887765

>PF15411 PH_10: Pleckstrin homology domain

Probab=96.13  E-value=0.17  Score=31.99  Aligned_cols=92  Identities=20%  Similarity=0.239  Sum_probs=60.2

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCC----------CCcc------eEEeCCceEEeecCcccC
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRA----------SKPR------GVIPVASCLTVKGAEDVL   88 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~----------~~~~------~~i~l~~~~~v~~~~~~~   88 (143)
                      +...+-|-+.....  ..|+..++.|....|.+++.......          ....      |.|-+...+.+...+  .
T Consensus         5 G~Lll~g~~~V~k~--~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s--~   80 (116)
T PF15411_consen    5 GELLLHGTLTVGKD--DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSS--K   80 (116)
T ss_pred             cceEEccEEEEEeC--CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccC--C
Confidence            34456666665543  57999999999998888886653211          1122      334444433333332  2


Q ss_pred             CCcceEEEEeC----CeEEEEEcCCHHHHHHHHHHH
Q 032301           89 NKQYAFELSTR----TETMYFIADSEKEKEDWINSI  120 (143)
Q Consensus        89 ~~~~~f~i~~~----~~~~~~~a~s~~e~~~W~~al  120 (143)
                      ...+.++|.-.    ...+.+...+++.++.|..+|
T Consensus        81 ~g~~~L~i~w~~d~e~~~F~lrf~nee~l~~W~~~L  116 (116)
T PF15411_consen   81 PGSYSLQISWKGDPELENFTLRFRNEEQLEQWRSAL  116 (116)
T ss_pred             CCceEEEEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence            45688888862    267999999999999999875

>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]

Probab=95.63  E-value=0.038  Score=42.96  Aligned_cols=98  Identities=20%  Similarity=0.294  Sum_probs=67.8

Q ss_pred             ccCCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC-e
Q 032301           23 FWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT-E  101 (143)
Q Consensus        23 ~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~-~  101 (143)
                      ..+++++.|....+-+. ..=+.||++|..+.|.++.-...-..-...+-+++.|. +|...++.....+.|.|.... .
T Consensus       306 ~lG~iiymg~v~Vqy~~-ad~~dRy~~LF~~~llflsvs~rMs~fIyegKlp~tG~-iV~klEdte~~~nafeis~~ti~  383 (661)
T KOG2070|consen  306 TLGNIIYMGQVLVQYAG-ADEKDRYLLLFPNVLLFLSVSPRMSGFIYEGKLPTTGM-IVTKLEDTENHRNAFEISGSTIE  383 (661)
T ss_pred             hccceEeeeehhhhhcC-cchhhheeeeccceeeeeEeccccchhhhcccccccee-EEeehhhhhcccccccccccchh
Confidence            34567777776654211 12358999999998877754432112224467788885 566666666778889988776 5


Q ss_pred             EEEEEcCCHHHHHHHHHHHHH
Q 032301          102 TMYFIADSEKEKEDWINSIGR  122 (143)
Q Consensus       102 ~~~~~a~s~~e~~~W~~al~~  122 (143)
                      .+...|.++.++++|+.+++.
T Consensus       384 rIv~~c~~~~~l~~wve~ln~  404 (661)
T KOG2070|consen  384 RIVVSCNNQQDLQEWVEHLNK  404 (661)
T ss_pred             heeeccCChHHHHHHHHHhhh
Confidence            577889999999999999985

>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]

Probab=94.92  E-value=0.025  Score=46.45  Aligned_cols=101  Identities=23%  Similarity=0.373  Sum_probs=69.4

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecC-CCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEE
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKES-TVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMY  104 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~-~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~  104 (143)
                      ..+..|-|.|..+  +.-++|-|.|-.+.+.|-... ...+.-...+.+++.  ..++..+....-+|+|.|....+.++
T Consensus       749 E~ir~g~llK~sk--kgLqqrmfFLfsdillytsk~~~~~~~fri~g~lP~~--l~~en~en~~s~p~~~ti~~~qk~i~  824 (1036)
T KOG3531|consen  749 EFIRSGCLLKLSK--KGLQQRMFFLFSDILLYTSKGPDVQKCFRINGDLPLT--LTMENSENEWSVPHCFTISGAQKQIY  824 (1036)
T ss_pred             hhhhcCCchhhcc--ccchhhhhhhhhhhheeccCCCChhheeEeccCCceE--eeeecccccccCCceEEEeccceEEE
Confidence            4577888887642  355777777776666665443 222122334555555  23444444556799999999999999


Q ss_pred             EEcCCHHHHHHHHHHHHHHHHhhCCC
Q 032301          105 FIADSEKEKEDWINSIGRSIVQHSRS  130 (143)
Q Consensus       105 ~~a~s~~e~~~W~~al~~~~~~~~~~  130 (143)
                      ..|.+..+.+.|..-++.++....+.
T Consensus       825 vsast~~~sk~~~~~r~~~i~~~~k~  850 (1036)
T KOG3531|consen  825 VSASTRRESKKWEFDRRKAIDLAPKK  850 (1036)
T ss_pred             Eeccchhhhhhhhhccchhhhhcccc
Confidence            99999999999999988888755543

>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]

Probab=94.85  E-value=0.0029  Score=50.00  Aligned_cols=50  Identities=26%  Similarity=0.585  Sum_probs=40.3

Q ss_pred             CceEEEEEEeCC---CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceE
Q 032301           27 PERSGWLTKQGE---YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCL   79 (143)
Q Consensus        27 ~~~~G~L~k~~~---~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~   79 (143)
                      ...+||+++.+.   ....|++.||||.++.|+.|.+.+   ...+..+|.|...+
T Consensus       562 G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~---~~~~e~~i~l~~~~  614 (638)
T KOG1738|consen  562 GDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHR---VRAAESVIKLPLFT  614 (638)
T ss_pred             chhhccchhhccchHHHHHhhhheeeecCchhhhhhhhh---hhchhheeeccchh
Confidence            456788887643   235799999999999999999998   56788999998864

>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain

Probab=94.79  E-value=0.68  Score=30.26  Aligned_cols=84  Identities=15%  Similarity=0.319  Sum_probs=52.5

Q ss_pred             eEEEEEECCeEEEEecCCCCCCC-------------Cc---ceEEeCCceEEeecCcccCCCcceEEEEe--------CC
Q 032301           45 RRWFVLKQGKLFWFKESTVTRAS-------------KP---RGVIPVASCLTVKGAEDVLNKQYAFELST--------RT  100 (143)
Q Consensus        45 ~r~~vL~~~~l~~~~~~~~~~~~-------------~~---~~~i~l~~~~~v~~~~~~~~~~~~f~i~~--------~~  100 (143)
                      ---||++...+..|+.....+..             +|   ...|++....+-..+.......+.+.|.+        |.
T Consensus        51 ~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n~ad~e~~~vwEliH~kSe~egRpE  130 (160)
T cd01255          51 LMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASSAADMESNFLWELIHLKSELEGRPE  130 (160)
T ss_pred             EEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCCCcCcccceEEEEEeecccccCCCc
Confidence            34578888888888765521111             11   11444444322222222234567888875        34


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301          101 ETMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus       101 ~~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                      ++|.|+|.+.+-.+..+..|+..+....
T Consensus       131 ~vfqLCcS~~E~k~~flK~Irsilre~~  158 (160)
T cd01255         131 KVFVLCCSTAESRNAFLKTIRSILRESV  158 (160)
T ss_pred             ceEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence            6799999999999999999998887543

TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.

>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]

Probab=94.79  E-value=0.001  Score=56.47  Aligned_cols=102  Identities=20%  Similarity=0.282  Sum_probs=74.0

Q ss_pred             ccCCCceEEEEEEe----------CCCCCCceeEEEEEECCeEEEEecCCCCC-----------CCCcceEEeCCceEEe
Q 032301           23 FWSNPERSGWLTKQ----------GEYIKTWRRRWFVLKQGKLFWFKESTVTR-----------ASKPRGVIPVASCLTV   81 (143)
Q Consensus        23 ~~~~~~~~G~L~k~----------~~~~~~w~~r~~vL~~~~l~~~~~~~~~~-----------~~~~~~~i~l~~~~~v   81 (143)
                      .+.+..++|||+.+          |..+..|+..|.+|.++.++.+++.....           ....-..+.++.|.+.
T Consensus       919 ~Fsd~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltd  998 (1973)
T KOG4407|consen  919 LFSDSEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTD  998 (1973)
T ss_pred             hhhhhhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhh
Confidence            34678899999875          12456899999999999999998776210           1122334566666543


Q ss_pred             ecCcccCCCcceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301           82 KGAEDVLNKQYAFELSTRT-ETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus        82 ~~~~~~~~~~~~f~i~~~~-~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                      .... ..++.+.|++.+.+ ....|++++.++|-.|+...+....
T Consensus       999 I~ys-etkrn~vfRLTt~d~ce~lfqaeDrddmlgG~~ttq~St~ 1042 (1973)
T KOG4407|consen  999 IQYS-ETKRNQVFRLTTNDLCEGLFQAEDRDDMLGGLSTTQSSTT 1042 (1973)
T ss_pred             hhhh-hhhhhhHHHhHHHHHHhHhhccCccccccchhhhhhhccc
Confidence            3222 24778999999988 7789999999999999998865544

>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]

Probab=94.70  E-value=0.04  Score=43.48  Aligned_cols=87  Identities=14%  Similarity=0.120  Sum_probs=65.2

Q ss_pred             CCCCceeEEEEEE---CCeEEEEecCCCCCCCCcceEEeCCceEEeecCcc-cCCCcceEEEEeCCeEEEEEcCCHHHHH
Q 032301           39 YIKTWRRRWFVLK---QGKLFWFKESTVTRASKPRGVIPVASCLTVKGAED-VLNKQYAFELSTRTETMYFIADSEKEKE  114 (143)
Q Consensus        39 ~~~~w~~r~~vL~---~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~-~~~~~~~f~i~~~~~~~~~~a~s~~e~~  114 (143)
                      ....|...|+++-   ...++.|..++   +......|+|.+|.+..+... .....++|.+.-....++|.++|++-.+
T Consensus       509 ~~~~g~~a~~~vP~~d~~~~~~Yg~~q---Dv~a~~~iPl~~~~v~~pe~~~~~D~~~~~k~~~s~~~~~~~a~~~q~qq  585 (623)
T KOG4424|consen  509 AGKTGILAWSVVPKSDPLVDYSYGSPQ---DVRAQATIPLPGVEVTIPEFVRREDLFHVFKLVQSHLSWHLAADDEQLQQ  585 (623)
T ss_pred             cCccceeeeeeccCCCCccccccCCcc---ccccccccccCccccCCCcccccchhcchhhhhhhcceeeeccCCHHHHH
Confidence            3468999998874   44677777777   566788999999754432221 1233678888877889999999999999


Q ss_pred             HHHHHHHHHHHhhC
Q 032301          115 DWINSIGRSIVQHS  128 (143)
Q Consensus       115 ~W~~al~~~~~~~~  128 (143)
                      .|+..|..|+....
T Consensus       586 ~wl~~l~~A~~~d~  599 (623)
T KOG4424|consen  586 RWLEVLLLAVSGDL  599 (623)
T ss_pred             HHHHHHHhhhcccc
Confidence            99999999987543

>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]

Probab=94.66  E-value=0.094  Score=41.78  Aligned_cols=80  Identities=16%  Similarity=0.303  Sum_probs=51.7

Q ss_pred             CceeEEEEEECCeEEEEecCCCCC----CCCcceEEeCCceEEeecCc----ccCCCcceEEEEeC----C--eEEEEEc
Q 032301           42 TWRRRWFVLKQGKLFWFKESTVTR----ASKPRGVIPVASCLTVKGAE----DVLNKQYAFELSTR----T--ETMYFIA  107 (143)
Q Consensus        42 ~w~~r~~vL~~~~l~~~~~~~~~~----~~~~~~~i~l~~~~~v~~~~----~~~~~~~~f~i~~~----~--~~~~~~a  107 (143)
                      ..+..|+.|..+.|.+.+......    +.++...+.+..|..-...+    .....+|.|.+.--    +  ..++|.|
T Consensus       498 ~~~~vylfLFnD~Llitk~k~~~~f~V~Dya~r~~l~ve~~e~~~~lp~~~~~~~~~~hlF~ltLl~N~~~~~~e~lL~a  577 (695)
T KOG3523|consen  498 LSKTVYLFLFNDLLLITKKKSEGSFQVFDYAPRSLLQVEKCEPELKLPGGANSLSSRPHLFLLTLLSNHQGRQTELLLSA  577 (695)
T ss_pred             ccceeeeeeecceeeEeeecCCCceEEeeccchhhhhhhhcCcccCCCCCCcccccccceEEEehhhccCCCceeeeecC
Confidence            456888899999998887766211    22345555555543211111    11234688888742    2  4589999


Q ss_pred             CCHHHHHHHHHHHH
Q 032301          108 DSEKEKEDWINSIG  121 (143)
Q Consensus       108 ~s~~e~~~W~~al~  121 (143)
                      +|+.|+++|+.||.
T Consensus       578 ~s~Sd~~RWi~Al~  591 (695)
T KOG3523|consen  578 ESQSDRQRWISALR  591 (695)
T ss_pred             CchHHHHHHHHhcC
Confidence            99999999999984

>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]

Probab=94.64  E-value=0.025  Score=46.55  Aligned_cols=90  Identities=17%  Similarity=0.327  Sum_probs=60.7

Q ss_pred             CceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeC-CeEEEE
Q 032301           27 PERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTR-TETMYF  105 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~-~~~~~~  105 (143)
                      .-.+|||.+-....+.|.+|||++.++.+.||...... ...+.+.+.+... .+..     .....+.+... ...++.
T Consensus        77 ~~~~g~l~k~~n~~~~~~~r~f~l~~g~ls~~~~~~~~-~~~~~~~~~~~~a-~i~~-----~~~~~~~~~~~~~q~~~~  149 (799)
T KOG1737|consen   77 ASLEGILLKWRNYSKGPSSRWFVLSGGLLSYYFDNSFS-KTTCGGGINLVTA-WIQN-----GERMDICSVDGSCQIYLV  149 (799)
T ss_pred             ccccceeeccccccCCcccceEEecCcceeeeccCCcc-ccCCCCccccccc-cccc-----CCCcccchhhcccchhhh
Confidence            34679999987788899999999999999999877632 3345556655442 1111     11122222222 355677


Q ss_pred             EcCCHHHHHHHHHHHHHH
Q 032301          106 IADSEKEKEDWINSIGRS  123 (143)
Q Consensus       106 ~a~s~~e~~~W~~al~~~  123 (143)
                      .+.+..+...|+.+++.+
T Consensus       150 ~~~~~~~~~~~~~~~~l~  167 (799)
T KOG1737|consen  150 ELSKKLQRQGWLHALELA  167 (799)
T ss_pred             hhhHHHhhcchhhhhhhc
Confidence            788889999999999877

>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function

Probab=94.47  E-value=0.18  Score=31.40  Aligned_cols=39  Identities=26%  Similarity=0.441  Sum_probs=34.7

Q ss_pred             CCcceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301           89 NKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus        89 ~~~~~f~i~~~~~~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      ...+.|-|.|..+.+-|.|+|..+.+.|++.|+..+...
T Consensus        68 ~~~~yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL~~~  106 (110)
T PF08458_consen   68 EERRYFGLKTAQGVVEFECDSQREYKRWVQGIQHMLSQV  106 (110)
T ss_pred             ceEEEEEEEecCcEEEEEeCChhhHHHHHHHHHHHHHHh
Confidence            356889999999999999999999999999999887653

>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]

Probab=93.22  E-value=0.038  Score=44.57  Aligned_cols=92  Identities=8%  Similarity=-0.193  Sum_probs=66.7

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEEE
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYF  105 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~~  105 (143)
                      ...+.|+|.++....+.|+.+||++.++.+.+|+++.+    .+.+.+.+.+-......    -....-++.+..+++++
T Consensus       258 ~~s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d----~~s~~~~~~~~~s~~fq----li~~t~~~~~~~~s~~l  329 (936)
T KOG0248|consen  258 LTSRIKSLKRRYVVFKNGQISFYRKHNNRDEEPASKID----IRSVTKLEQQGAAYAFQ----LITSTDKMNFMTESERT  329 (936)
T ss_pred             chHHHHHHHhHheeeccceEEEEEcCCCccccccCccc----ccccceeeccchhHHhh----hhhhceeEEEeccChhh
Confidence            35667888888777899999999999999999998863    35566656542122221    11234455666678889


Q ss_pred             EcCCHHHHHHHHHHHHHHHH
Q 032301          106 IADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus       106 ~a~s~~e~~~W~~al~~~~~  125 (143)
                      .++...-+++|+.++.....
T Consensus       330 t~dw~~iL~~~iKv~~~~~~  349 (936)
T KOG0248|consen  330 THDWVTILSAAIKATTLREM  349 (936)
T ss_pred             hhhhHHHHHHHHHHHhccch
Confidence            99999999999999986644

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=92.35  E-value=0.32  Score=40.43  Aligned_cols=59  Identities=25%  Similarity=0.391  Sum_probs=43.3

Q ss_pred             cceEEeCCceEEeecCcccCCCcceEEEEeCC---eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301           69 PRGVIPVASCLTVKGAEDVLNKQYAFELSTRT---ETMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus        69 ~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~---~~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      ..++.+++.+.++........+.+.|.|....   ..+.|.|++.+++.+|+.+|+++....
T Consensus       852 ~rgi~d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a  913 (1267)
T KOG1264|consen  852 CRGILDLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKA  913 (1267)
T ss_pred             hhccccccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHh
Confidence            34566677666665555545567788887543   668999999999999999999887643

>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]

Probab=90.59  E-value=0.19  Score=38.76  Aligned_cols=101  Identities=12%  Similarity=0.069  Sum_probs=60.1

Q ss_pred             CCceEEEEEEeCCC--CCCceeEEEEEECCe------EEEEecCCCCC----CCCcceEEeCCceEEeecCcccCCCcce
Q 032301           26 NPERSGWLTKQGEY--IKTWRRRWFVLKQGK------LFWFKESTVTR----ASKPRGVIPVASCLTVKGAEDVLNKQYA   93 (143)
Q Consensus        26 ~~~~~G~L~k~~~~--~~~w~~r~~vL~~~~------l~~~~~~~~~~----~~~~~~~i~l~~~~~v~~~~~~~~~~~~   93 (143)
                      ..++.|++......  .+.|.+.|++|....      +..|.......    ..-...++.++.|..++........+-.
T Consensus         7 ~~~k~g~~~~~~~r~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~~~~~~~~~rR~~~ls~~~S~e~~~~~~~~~~i   86 (429)
T KOG4047|consen    7 CLVKDGVPDNHRNKFKVKNVRDDGAELGSGSMELTARLEILESRGRESVRWPYRCLRRYGYLSNLFSFESGRRCQTGPGI   86 (429)
T ss_pred             cccccCccchhhhhhccccccccceeeeccccccchhhhhhhccCCcccccchhcceeeEeeccceeeecccccccCCCc
Confidence            46788888766443  358999999997553      33333222110    1112367778888777766543333333


Q ss_pred             EEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           94 FELSTRTETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        94 f~i~~~~~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      +......-.-+|-|.+.-+...|+++|..-...
T Consensus        87 ~~~f~~~a~e~~~~~q~l~~~~w~~~i~~~~~~  119 (429)
T KOG4047|consen   87 TAFFCDRAEELFNMLQDLMQANWINAIEEPAIP  119 (429)
T ss_pred             eEEEecchHHHHHHHHHHHhhhhhhhhhhcccc
Confidence            333322211167788888888899999877664

>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]

Probab=90.58  E-value=0.41  Score=36.41  Aligned_cols=39  Identities=15%  Similarity=0.353  Sum_probs=32.5

Q ss_pred             CCcceEEEEeCC--eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301           89 NKQYAFELSTRT--ETMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus        89 ~~~~~f~i~~~~--~~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      ....+|.|..++  .+.++.|.|..++..|..||+.++...
T Consensus       234 pEnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~~l  274 (506)
T KOG3551|consen  234 PENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVNTL  274 (506)
T ss_pred             cccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHhhH
Confidence            345678898887  678899999999999999999887643

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=90.54  E-value=1.5  Score=35.01  Aligned_cols=89  Identities=21%  Similarity=0.300  Sum_probs=57.3

Q ss_pred             ceEEEEEEeCCCCCCceeEEEEEEC-CeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEEEE
Q 032301           28 ERSGWLTKQGEYIKTWRRRWFVLKQ-GKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFI  106 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~-~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~  106 (143)
                      .++|.|.++.+.  .-++|.+.|+. ..+.|+...    .....+.|++..+..++.     ...+.|-|.+|+++|+|.
T Consensus       452 ~k~~~l~k~~~l--f~rkr~lllTn~~rll~~~~~----~~~lk~eip~~~~~~~e~-----~n~~~~~i~TP~k~~~l~  520 (604)
T KOG0592|consen  452 LKEGALEKRQGL--FARKRMLLLTNGPRLLYVDPQ----NLVLKGEIPWSPDLRVEL-----KNSSTFFIHTPNKVYYLE  520 (604)
T ss_pred             HhHHHHHhhhhh--hhceeEEEecCCCeEEEEecc----cceeccccccCcccceee-----ccCcceEEECCccceecc
Confidence            345555554322  23567888874 455555533    344667777776544433     446899999999999887


Q ss_pred             cCCHHHHHHHHHHHHHHHHhhC
Q 032301          107 ADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus       107 a~s~~e~~~W~~al~~~~~~~~  128 (143)
                      -. ...+..|..||......+.
T Consensus       521 d~-~~~as~w~~ai~~~~~~~~  541 (604)
T KOG0592|consen  521 DP-EQRASVWCKAIETVRKRYS  541 (604)
T ss_pred             Cc-ccchhHHHHhhhhhhhccc
Confidence            53 4567789999999844433

>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]

Probab=88.82  E-value=2.5  Score=34.13  Aligned_cols=105  Identities=16%  Similarity=0.219  Sum_probs=69.0

Q ss_pred             cCCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecC-c--ccCC-----CcceEE
Q 032301           24 WSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA-E--DVLN-----KQYAFE   95 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~-~--~~~~-----~~~~f~   95 (143)
                      ++.+-..|-|.......+.-+.||..|.+..+...+...+  .......+.+....+.+.. .  +..+     ..+.|.
T Consensus       403 ~GRpkiDGElki~s~~~~tkqdRyiFLfDkvviVCKrkG~--sy~lke~i~l~~y~m~d~~~~~kd~kk~~~~~ws~~f~  480 (865)
T KOG2996|consen  403 FGRPKIDGELKITSTQAHTKQDRYIFLFDKVVIVCKRKGD--SYELKEIIYLNAYKMSDDPIDDKDNKKVSTITWSYGFY  480 (865)
T ss_pred             hCCCCcCceEEEeehhcCCccceEEeEecceEEEeeccCc--chhHHHHHHHHhhccccCCCCchhhhhccceeeeeeEE
Confidence            4556677888776554556789999999999998887753  2233444555432211111 0  1111     257777


Q ss_pred             EEeC-C-eEEEEEcCCHHHHHHHHHHHHHHHHhhCCC
Q 032301           96 LSTR-T-ETMYFIADSEKEKEDWINSIGRSIVQHSRS  130 (143)
Q Consensus        96 i~~~-~-~~~~~~a~s~~e~~~W~~al~~~~~~~~~~  130 (143)
                      |++. + .-+-|+|.++.-.+.|+.++..++..-.+.
T Consensus       481 lI~tqg~ngl~fy~Kte~~kkkWmeqfema~SNi~Pd  517 (865)
T KOG2996|consen  481 LIHTQGRNGLEFYCKTEDLKKKWMEQFEMAKSNISPD  517 (865)
T ss_pred             EEEEcCCcceEEEEecHHHHHHHHHHHHHHHhcCCcc
Confidence            7654 3 458899999999999999999998865554

>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]

Probab=88.72  E-value=0.011  Score=48.33  Aligned_cols=95  Identities=17%  Similarity=0.167  Sum_probs=60.5

Q ss_pred             ceEEEEEEeCCCCCCceeEEEEEECCeEEEE-ecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEEEE
Q 032301           28 ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWF-KESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFI  106 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~-~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~  106 (143)
                      +..|...+.......|+.+++.+++..-.++ +...    ......+.+....+-+.  ....-++.|.+.++-+.+.++
T Consensus         3 ~~rgl~~~~~ne~Ea~k~r~~~~k~~~~~~vakTa~----g~~~~~~d~t~a~~~eS--s~~n~~~sf~vi~~~rk~r~~   76 (1099)
T KOG1170|consen    3 VTRGLDNDVDNEREAWKQSILRAKDRMPEKVAKTAS----GPLFALLDLTSAHVAES--STNNPRPSFCVITPVRKHRLC   76 (1099)
T ss_pred             cccccccccccHHHHHHHHHHHHHHHHHHHHHhccC----CccHHHHhccccccccc--ccCCCCCCeeEecccHHhhhh
Confidence            3455555555445578888887776653333 3322    11223333333222222  223457899999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHhhC
Q 032301          107 ADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus       107 a~s~~e~~~W~~al~~~~~~~~  128 (143)
                      +++..++..|+.+++.......
T Consensus        77 adn~ke~e~wi~~~kt~q~~e~   98 (1099)
T KOG1170|consen   77 ADNRKEMEKWINQSKTPQHLEF   98 (1099)
T ss_pred             ccchhHHHHhhccccchhhccc
Confidence            9999999999999987766443

>KOG0517 consensus Beta-spectrin [Cytoskeleton]

Probab=86.79  E-value=0.015  Score=51.42  Aligned_cols=97  Identities=20%  Similarity=0.364  Sum_probs=66.9

Q ss_pred             ceEEEEEEe--------CCCCCCceeEEEEEECCeEEEEecCCCCCCC---Ccce--EEeCCceEEeecCcccCCCcceE
Q 032301           28 ERSGWLTKQ--------GEYIKTWRRRWFVLKQGKLFWFKESTVTRAS---KPRG--VIPVASCLTVKGAEDVLNKQYAF   94 (143)
Q Consensus        28 ~~~G~L~k~--------~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~---~~~~--~i~l~~~~~v~~~~~~~~~~~~f   94 (143)
                      .++|+|+++        ....+.|..-||++..+.+.+|++.......   ...+  .+.+..+ .+....+..+++++|
T Consensus      2300 ~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a-~i~~a~dy~kkk~v~ 2378 (2473)
T KOG0517|consen 2300 QLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMA-AIEVASDYHKKKHVF 2378 (2473)
T ss_pred             HHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccccchhhccCCcchhcchh-HHHHHHHHHHHhHhh
Confidence            467888654        1244689999999999999999988732111   0111  1222222 233334556778999


Q ss_pred             EEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301           95 ELSTRT-ETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus        95 ~i~~~~-~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                      .+..+. ..|.|.|.++++|+.|+.++...+.
T Consensus      2379 ~l~~~~gae~llq~k~ee~m~sWL~~~a~~~~ 2410 (2473)
T KOG0517|consen 2379 LLQLPPGAEHLLQAKDEEEMESWLRALAVKRA 2410 (2473)
T ss_pred             hhcCCchHHHHHhhccHHHHHHHHHHHHHHHH
Confidence            999765 6689999999999999999987775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	143
2r0d_A	347	Crystal Structure Of Autoinhibited Form Of Grp1 Arf		5e-13
2r09_A	347	Crystal Structure Of Autoinhibited Form Of Grp1 Arf		1e-12
1fhw_A	129	Structure Of The Pleckstrin Homology Domain From Gr		4e-12
1fhx_A	129	Structure Of The Pleckstrin Homology Domain From Gr		1e-11
1fgy_A	127	Grp1 Ph Domain With Ins(1,3,4,5)p4 Length = 127		8e-11
1u2b_A	138	Triglycine Variant Of The Grp1 Pleckstrin Homology		1e-10
1eaz_A	125	Crystal Structure Of The Phosphoinositol (3,4)-Bisp		7e-10
1u27_A	129	Triglycine Variant Of The Arno Pleckstrin Homology		4e-09
2dkp_A	128	Solution Structure Of The Ph Domain Of Pleckstrin H		1e-07
1p6s_A	111	Solution Structure Of The Pleckstrin Homology Domai		4e-07
1v89_A	118	Solution Structure Of The Pleckstrin Homology Domai		6e-07
1pls_A	113	Solution Structure Of A Pleckstrin Homology Domain		9e-07
3tfm_A	228	Myosin X Ph1n-Ph2-Ph1c Tandem Length = 228		1e-06
2yry_A	122	Solution Structure Of The Ph Domain Of Pleckstrin H		1e-06
2d9y_A	117	Solution Structure Of The Ph Domain Of Pepp-3 From		1e-06
1fao_A	126	Structure Of The Pleckstrin Homology Domain From Da		2e-06
1unr_A	125	Crystal Structure Of The Ph Domain Of Pkb Alpha In		3e-06
2uvm_A	123	Structure Of Pkbalpha Ph Domain In Complex With A N		3e-06
1unp_A	121	Crystal Structure Of The Pleckstrin Homology Domain		3e-06
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		3e-06
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		4e-06
1h10_A	125	High Resolution Structure Of The Pleckstrin Homolog		5e-06
2uzs_A	125	A Transforming Mutation In The Pleckstrin Homology		9e-06
2uzr_A	124	A Transforming Mutation In The Pleckstrin Homology		9e-06
1wg7_A	150	Solution Structure Of Pleckstrin Homology Domain Fr		2e-05
2x18_A	119	The Crystal Structure Of The Ph Domain Of Human Akt		4e-05
1zm0_A	114	Crystal Structure Of The Carboxyl Terminal Ph Domai		7e-05
1x05_A	129	Solution Structure Of The C-Terminal Ph Domain Of H		2e-04
2i5c_A	109	Crystal Structure Of The C-Terminal Ph Domain Of Pl		2e-04
1xx0_A	127	Structure Of The C-Terminal Ph Domain Of Human Plec		2e-04
2rsg_A	94	Solution Structure Of The Cert Ph Domain Length = 9		2e-04
1qqg_A	264	Crystal Structure Of The Ph-Ptb Targeting Region Of		2e-04
2dn6_A	115	Solution Structure Of The Ph Domain Of Kiaa0640 Pro		4e-04
1v5u_A	117	Solution Structure Of The C-Terminal Pleckstrin Hom		7e-04
1upq_A	123	Crystal Structure Of The Pleckstrin Homology (Ph) D		8e-04

>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 78/147 (53%), Gaps = 30/147 (20%)
Query: 3   SLWRAISGQTNQLSDYDSTEF---WSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFK 59
           +L+ +I  +  ++ + D  +    + NP+R GWL K G  +KTW+RRWF+L    L++F+
Sbjct: 186 NLYESIKNEPFKIPEDDGNDLTHTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFE 245
Query: 60  ESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL-----------STRTE------- 101
            +T     +PRG+IP+ + L+++  ED   K   FEL           + +TE       
Sbjct: 246 YTT---DKEPRGIIPLEN-LSIREVEDP-RKPNCFELYNPSHKGQVIKACKTEADGRVVE 300
Query: 102 ---TMYFI-ADSEKEKEDWINSIGRSI 124
               +Y I A S +EKE+W+ SI  SI
Sbjct: 301 GNHVVYRISAPSPEEKEEWMKSIKASI 327

>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 30/149 (20%)
Query: 1   MGSLWRAISGQTNQLSDYDSTEF---WSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFW 57
           + +L+ +I  +  ++ + D  +    + NP+R GWL K G  +KTW+RRWF+L    L++
Sbjct: 184 LRNLYESIKNEPFKIPEDDGNDLTYTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYY 243
Query: 58  FKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL-----------STRTE----- 101
           F+ +T     +PRG+IP+ + L+++  ED   K   FEL           + +TE     
Sbjct: 244 FEYTT---DKEPRGIIPLEN-LSIREVEDP-RKPNCFELYNPSHKGQVIKACKTEADGRV 298
Query: 102 -----TMYFI-ADSEKEKEDWINSIGRSI 124
                 +Y I A S +EKE+W  SI  SI
Sbjct: 299 VEGNHVVYRISAPSPEEKEEWXKSIKASI 327

>pdb|1FHW|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In Complex With Inositol(1,3,4,5,6)pentakisphosphate Length = 129

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 66/121 (54%), Gaps = 27/121 (22%)
Query: 26  NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE 85
           NP+R GWL K G  +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + L+++  E
Sbjct: 2   NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN-LSIREVE 57
Query: 86  DVLNKQYAFEL-----------STRTE----------TMYFI-ADSEKEKEDWINSIGRS 123
           D   K   FEL           + +TE           +Y I A S +EKE+W+ SI  S
Sbjct: 58  DP-RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKAS 116
Query: 124 I 124
           I
Sbjct: 117 I 117

>pdb|1FHX|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In Complex With Inositol 1,3,4,5-Tetrakisphosphate Length = 129

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 27/121 (22%)
Query: 26  NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE 85
           NP+R GWL K G  +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + L+++  E
Sbjct: 2   NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN-LSIREVE 57
Query: 86  DVLNKQYAFEL-----------STRTE----------TMYFI-ADSEKEKEDWINSIGRS 123
           D   K   FEL           + +TE           +Y I A S +EKE+W  SI  S
Sbjct: 58  DP-RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWXKSIKAS 116
Query: 124 I 124
           I
Sbjct: 117 I 117

>pdb|1FGY|A Chain A, Grp1 Ph Domain With Ins(1,3,4,5)p4 Length = 127

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 64/121 (52%), Gaps = 27/121 (22%)
Query: 26  NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE 85
           NP+R GWL K G  +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + L+++   
Sbjct: 4   NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN-LSIREVL 59
Query: 86  DVLNKQYAFEL-----------STRTE----------TMYFI-ADSEKEKEDWINSIGRS 123
           D   K   FEL           + +TE           +Y I A S +EKE+W  SI  S
Sbjct: 60  DP-RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWXKSIKAS 118
Query: 124 I 124
           I
Sbjct: 119 I 119

>pdb|1U2B|A Chain A, Triglycine Variant Of The Grp1 Pleckstrin Homology Domain Unliganded Length = 138

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 28/122 (22%)
Query: 26  NPERSGWLTK-QGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA 84
           NP+R GWL K  G  +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + L+++  
Sbjct: 14  NPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN-LSIREV 69
Query: 85  EDVLNKQYAFEL-----------STRTE----------TMYFI-ADSEKEKEDWINSIGR 122
           ED   K   FEL           + +TE           +Y I A S +EKE+W+ SI  
Sbjct: 70  EDP-RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKA 128
Query: 123 SI 124
           SI
Sbjct: 129 SI 130

>pdb|1EAZ|A Chain A, Crystal Structure Of The Phosphoinositol (3,4)-Bisphosphate Binding Ph Domain Of Tapp1 From Human Length = 125

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE--D 86
           ++G+  KQG  +K W+RR+F L +  + +FK        +P  VIP+     V+  +  D
Sbjct: 16  KAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSEL---EKEPLRVIPLKEVHKVQECKQSD 72
Query: 87  VLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIV 125
           ++ +   FE+ T + T Y  ADS +E   WI ++  +IV
Sbjct: 73  IMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIV 111

>pdb|1U27|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain In Complex With Ins(1,3,4,5)p4 Length = 129

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 28/123 (22%)
Query: 25  SNPERSGWLTK-QGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKG 83
            +P+R GWL K  G  +KTW+RRWF+L    L++F+ +T     +PRG+IP+ + L+++ 
Sbjct: 9   GSPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLEN-LSIRE 64
Query: 84  AEDVLNKQYAFEL-----------STRTET----------MYFI-ADSEKEKEDWINSIG 121
            +D   K   FEL           + +TE           +Y I A +++EK++WI SI 
Sbjct: 65  VDDP-RKPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRISAPTQEEKDEWIKSIQ 123
Query: 122 RSI 124
            ++
Sbjct: 124 AAV 126

>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology Domain-Containing Protein Family A Member 5 From Human Length = 128

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 7/104 (6%)
Query: 29  RSGWLTKQGEY-IKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASC-LTVKGAED 86
           R GWL KQ    +K W++RWFVL    LF++++    +     G I + S  + +  +ED
Sbjct: 23  RRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDE---KEEGILGSILLPSFQIALLTSED 79
Query: 87  VLNKQYAFELS-TRTETMYFIADSEKEKEDWINS-IGRSIVQHS 128
            +N++YAF+ +     T YF  D+ KE E W+ + +  ++VQ S
Sbjct: 80  HINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQTS 123

>pdb|1P6S|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of Human Protein Kinase B Beta (PkbAKT) Length = 111

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 14/101 (13%)
Query: 29  RSGWLTKQGEYIKTWRRRWFVLK-QGKLFWFKESTVTRASKPRGVIP------VASCLTV 81
           + GWL K+GEYIKTWR R+F+LK  G    +KE    R   P   +P      VA C  +
Sbjct: 8   KEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKE----RPEAPDQTLPPLNNFSVAECQLM 63
Query: 82  KGAEDVLNKQY--AFELSTRTETMYFIADSEKEKEDWINSI 120
           K      N       + +T  E  + + DS  E+E+W+ +I
Sbjct: 64  KTERPRPNTFVIRCLQWTTVIERTFHV-DSPDEREEWMRAI 103

>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of Human Kiaa0053 Protein Length = 118

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 18/110 (16%)
Query: 25  SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA 84
           S P + GWL KQ   +K W++R+FVL+  +L+++K+   T   KP+G + +  C T+K  
Sbjct: 6   SGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDT---KPQGCMYLPGC-TIK-- 59
Query: 85  EDVLNKQ----YAFELSTRT--------ETMYFIADSEKEKEDWINSIGR 122
           E   N +    + FE+   +        ++   +A S+ E E+W+  + R
Sbjct: 60  EIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRR 109

>pdb|1PLS|A Chain A, Solution Structure Of A Pleckstrin Homology Domain Length = 113

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL 88
           R G+L K+G    TW+  W VL +  + ++K+ +    + P+G+IP+         +D  
Sbjct: 7   REGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKS---DNSPKGMIPLKGSTLTSPCQDFG 63
Query: 89  NKQYAFEL-STRTETMYFIADSEKEKEDWINSIGRSI 124
            + + F++ +T+ +  +F A   +E++ W+  I ++I
Sbjct: 64  KRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAI 100

>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem Length = 228

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 29  RSGWLTKQGEYIKT-----WRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKG 83
           + GWL   G    T     W++RWFVL+Q KL +F+  +     K +G + V S    K 
Sbjct: 60  KQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDS---EEKLKGTVEVRS---AKE 113
Query: 84  AEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSEI 136
             D  NK+   ++     T + IA+S ++   W      S++    S TD EI
Sbjct: 114 IIDNTNKENGIDIIMADRTFHLIAESPEDASQWF-----SVLSQVHSSTDQEI 161

>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology Domain-Containing Family A Member 6 From Human Length = 122

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 29  RSGWLTKQGEY-IKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASC-LTVKGAED 86
           ++GWL KQ    +K W +RWFVL    LF++K+    +     G IP+ S  +      D
Sbjct: 24  KAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDE---KEESILGSIPLLSFRVAAVQPSD 80
Query: 87  VLNKQYAFEL-STRTETMYFIADSEKEKEDWINSIGRS 123
            +++++ F+       T +F A+S +E+E WI ++G +
Sbjct: 81  NISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEA 118

>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human Length = 117

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 29  RSGWLTKQGEY-IKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASC-LTVKGAED 86
           ++GWL KQ    +K W +RWFVL    LF++K+    +     G IP+ S  +      D
Sbjct: 13  KAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDE---KEESILGSIPLLSFRVAAVQPSD 69
Query: 87  VLNKQYAFEL-STRTETMYFIADSEKEKEDWINSIGRS 123
            +++++ F+       T +F A+S +E+E WI ++G +
Sbjct: 70  NISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEA 107

>pdb|1FAO|A Chain A, Structure Of The Pleckstrin Homology Domain From Dapp1PHISH IN COMPLEX WITH INOSITOL 1,3,4,5- Tetrakisphosphate Length = 126

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKG--AED 86
           + G+LTKQG  +KTW+ RWF L + +L +FK+     + +P  ++ +  C  V+   +++
Sbjct: 20  KEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQM---SPEPIRILDLTECSAVQFDYSQE 76
Query: 87  VLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSE 135
            +N    F L     T Y  A +  E ++WI  +   + Q  + +   E
Sbjct: 77  RVN---CFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQIRKQLNQGE 122

>pdb|1UNR|A Chain A, Crystal Structure Of The Ph Domain Of Pkb Alpha In Complex With A Sulfate Molecule Length = 125

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQ-GKLFWFKE--STVTRASKPRGVIPVASCLTVKGAE 85
           + GWL K+GEYIKTWR R+F+LK  G    +KE    V +   P     VA C  +K   
Sbjct: 10  KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 69
Query: 86  DVLNKQY--AFELSTRTETMYFIADSEKEKEDWINSI 120
              N       + +T  E  + +   E E+E+W  +I
Sbjct: 70  PRPNTFIIRCLQWTTVIERTFHVETPE-EREEWTTAI 105

>pdb|2UVM|A Chain A, Structure Of Pkbalpha Ph Domain In Complex With A Novel Inositol Headgroup Surrogate, Benzene 1,2,3,4- Tetrakisphosphate Length = 123

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQ-GKLFWFKEST--VTRASKPRGVIPVASCLTVKGAE 85
           + GWL K+GEYIKTWR R+F+LK  G    +KE    V +   P     VA C  +K   
Sbjct: 8   KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 67
Query: 86  DVLNKQY--AFELSTRTETMYFIADSEKEKEDWINSI 120
              N       + +T  E  + +   E E+E+W  +I
Sbjct: 68  PRPNTFIIRCLQWTTVIERTFHVETPE-EREEWTTAI 103

>pdb|1UNP|A Chain A, Crystal Structure Of The Pleckstrin Homology Domain Of Pkb Alpha Length = 121

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQ-GKLFWFKEST--VTRASKPRGVIPVASCLTVKGAE 85
           + GWL K+GEYIKTWR R+F+LK  G    +KE    V +   P     VA C  +K   
Sbjct: 8   KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 67
Query: 86  DVLNKQY--AFELSTRTETMYFIADSEKEKEDWINSI 120
              N       + +T  E  + +   E E+E+W  +I
Sbjct: 68  PRPNTFIIRCLQWTTVIERTFHVETPE-EREEWTTAI 103

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQ-GKLFWFKE--STVTRASKPRGVIPVASCLTVKGAE 85
           + GWL K+GEYIKTWR R+F+LK  G    +KE    V +   P     VA C  +K   
Sbjct: 8   KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 67
Query: 86  DVLNKQY--AFELSTRTETMYFIADSEKEKEDWINSI 120
              N       + +T  E  + + ++ +E+E+W  +I
Sbjct: 68  PRPNTFIIRCLQWTTVIERTFHV-ETPEEREEWTTAI 103

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQ-GKLFWFKE--STVTRASKPRGVIPVASCLTVKGAE 85
           + GWL K+GEYIKTWR R+F+LK  G    +KE    V +   P     VA C  +K   
Sbjct: 11  KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 70
Query: 86  DVLNKQY--AFELSTRTETMYFIADSEKEKEDWINSI 120
              N       + +T  E  + +   E E+E+W  +I
Sbjct: 71  PRPNTFIIRCLQWTTVIERTFHVETPE-EREEWTTAI 106

>pdb|1H10|A Chain A, High Resolution Structure Of The Pleckstrin Homology Domain Of Protein Kinase BAKT BOUND TO Ins(1,3,4,5)-Tetrakisphophate Length = 125

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQ-GKLFWFKEST--VTRASKPRGVIPVASCLTVKGAE 85
           + GWL K+GEYIKTWR R+F+LK  G    +KE    V +   P     VA C   K   
Sbjct: 10  KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLXKTER 69
Query: 86  DVLNKQY--AFELSTRTETMYFIADSEKEKEDWINSI 120
              N       + +T  E  + +   E E+E+W  +I
Sbjct: 70  PRPNTFIIRCLQWTTVIERTFHVETPE-EREEWTTAI 105

>pdb|2UZS|A Chain A, A Transforming Mutation In The Pleckstrin Homology Domain Of Akt1 In Cancer (Akt1-Ph_e17k) Length = 125

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQ-GKLFWFKEST--VTRASKPRGVIPVASCLTVKGAE 85
           + GWL K+G+YIKTWR R+F+LK  G    +KE    V +   P     VA C  +K   
Sbjct: 10  KEGWLHKRGKYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 69
Query: 86  DVLNKQY--AFELSTRTETMYFIADSEKEKEDWINSI 120
              N       + +T  E  + +   E E+E+W  +I
Sbjct: 70  PRPNTFIIRCLQWTTVIERTFHVETPE-EREEWTTAI 105

>pdb|2UZR|A Chain A, A Transforming Mutation In The Pleckstrin Homology Domain Of Akt1 In Cancer (Akt1-Ph_e17k) Length = 124

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQ-GKLFWFKEST--VTRASKPRGVIPVASCLTVKGAE 85
           + GWL K+G+YIKTWR R+F+LK  G    +KE    V +   P     VA C  +K   
Sbjct: 9   KEGWLHKRGKYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 68
Query: 86  DVLNKQY--AFELSTRTETMYFIADSEKEKEDWINSI 120
              N       + +T  E  + +   E E+E+W  +I
Sbjct: 69  PRPNTFIIRCLQWTTVIERTFHVETPE-EREEWTTAI 104

>pdb|1WG7|A Chain A, Solution Structure Of Pleckstrin Homology Domain From Human Kiaa1058 Protein Length = 150

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 17/110 (15%)
Query: 29  RSGWLTKQGEY------IKTWRRRWFVLKQG-----KLFWFKESTVTRASKPRGVIPVAS 77
           + GWL K          +++++RR+F L Q       L ++K+  +++  +P+G I + S
Sbjct: 20  KHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISK--EPKGSIFLDS 77
Query: 78  CLTVKGAEDVLNKQYAFELSTRTETMYFIA-DSEKEKEDWINSIGRSIVQ 126
           C+ V     V  +++AFEL  + ++ Y +A DSE E E+WI +I   I+Q
Sbjct: 78  CMGVVQNNKV--RRFAFELKMQDKSSYLLAADSEVEMEEWI-TILNKILQ 124

>pdb|2X18|A Chain A, The Crystal Structure Of The Ph Domain Of Human Akt3 Protein Kinase Length = 119

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 29  RSGWLTKQGEYIKTWRRRWFVLK-QGKLFWFKESTV-TRASKPRGVIPVASCLTVKGAED 86
           + GW+ K+GEYIK WR R+F+LK  G    +KE         P     VA C  +K    
Sbjct: 9   KEGWVQKRGEYIKNWRPRYFLLKTDGSFIGYKEKPQDVDLPYPLNNFSVAKCQLMKTERP 68
Query: 87  VLNKQY--AFELSTRTETMYFIADSEKEKEDWINSI 120
             N       + +T  E  + + D+ +E+E+W  +I
Sbjct: 69  KPNTFIIRCLQWTTVIERTFHV-DTPEEREEWTEAI 103

>pdb|1ZM0|A Chain A, Crystal Structure Of The Carboxyl Terminal Ph Domain Of Pleckstrin To 2.1 Angstroms Length = 114

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 20  STEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCL 79
           S EF     + G L KQG   K W+ R F+L++   +         A  P G I +  C+
Sbjct: 2   SPEFRGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAG-AEDPLGAIHLRGCV 60
Query: 80  TVKGAEDVLN-----KQYAFELSTRTETMYFI-ADSEKEKEDWINSI 120
            V   E   N     ++  FE+ T  E  YF+ A + KE+ +WI +I
Sbjct: 61  -VTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAI 106

>pdb|1X05|A Chain A, Solution Structure Of The C-Terminal Ph Domain Of Human Pleckstrin Length = 129

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQ--GKLFWFKESTVTRASKPRGVIPVASCLTVKGAED 86
           + G L KQG   K W+ R F+L++    L ++  +    A  P G I +  C+ V   E 
Sbjct: 20  KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAG---AEDPLGAIHLRGCV-VTSVES 75
Query: 87  VLN-----KQYAFELSTRTETMYFI-ADSEKEKEDWINSI 120
             N     ++  FE+ T  E  YF+ A + KE+ +WI +I
Sbjct: 76  NSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAI 115

>pdb|2I5C|A Chain A, Crystal Structure Of The C-Terminal Ph Domain Of Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5 Length = 109

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQ--GKLFWFKESTVTRASKPRGVIPVASCLTVKGAED 86
           + G L KQG   K W+ R F+L++    L ++  +    A  P G I +  C+ V   E 
Sbjct: 9   KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAG---AEDPLGAIHLRGCV-VTSVES 64
Query: 87  VLN-----KQYAFELSTRTETMYFI-ADSEKEKEDWINSI 120
             N     ++  FE+ T  E  YF+ A + KE+ +WI +I
Sbjct: 65  NSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAI 104

>pdb|1XX0|A Chain A, Structure Of The C-Terminal Ph Domain Of Human Pleckstrin Length = 127

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL 88
           + G L KQG   K W+ R F+L++   +         A  P G I +  C+ V   E   
Sbjct: 24  KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAG-AEDPLGAIHLRGCV-VTSVESNS 81
Query: 89  N-----KQYAFELSTRTETMYFI-ADSEKEKEDWINSI 120
           N     ++  FE+ T  E  YF+ A + KE+ +WI +I
Sbjct: 82  NGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAI 119

>pdb|2RSG|A Chain A, Solution Structure Of The Cert Ph Domain Length = 94

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 28  ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDV 87
           ER G L+K   YI  W+ RW VLK   L ++K    T     RG I ++  +      D 
Sbjct: 2   ERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYG-CRGSICLSKAVITPHDFD- 59
Query: 88  LNKQYAFELSTRTETMYFIADSEKEKEDWINSI 120
              +  F++S      Y  A     ++ WI++I
Sbjct: 60  ---ECRFDISVNDSVWYLRAQDPDHRQQWIDAI 89

>pdb|1QQG|A Chain A, Crystal Structure Of The Ph-Ptb Targeting Region Of Irs-1 Length = 264

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 24  WSNPERSGWLTKQGEYIKTWRRRWFVLK-------QGKLFWFKESTV--TRASKPRGVIP 74
           +S+  + G+L K     K+  +R+FVL+         +L +++       ++S P+  IP
Sbjct: 7   FSDVRKVGYLRKP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIP 62
Query: 75  VASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSI 120
           + SC  +    D  NK +   L TR E     ADSE E++ W  ++
Sbjct: 63  LESCFNINKRADSKNK-HLVALYTRDEHFAIAADSEAEQDSWYQAL 107

>pdb|2DN6|A Chain A, Solution Structure Of The Ph Domain Of Kiaa0640 Protein From Human Length = 115

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL 88
           + G++ K+G   K W  RWFVLK   + ++    +      +G I +     V+   D  
Sbjct: 10  KQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDK---KGDILLDENCCVESLPDKD 66
Query: 89  NKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSI 124
            K+  F +    +T    A  +K+K++WI +I  +I
Sbjct: 67  GKKCLFLVKCFDKTFEISASDKKKKQEWIQAIHSTI 102

>pdb|1V5U|A Chain A, Solution Structure Of The C-Terminal Pleckstrin Homology Domain Of Sbf1 From Mouse Length = 117

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 31  GWLTKQGEYIKTWRRRWFVLKQGK--LFWFKESTVTRASKPRGVIPVASCLTVK------ 82
           G L K+G ++K W+ RWFVL + K  L ++     T     +GVI +A    V       
Sbjct: 12  GILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTEC---KGVIDLAEVEAVAPGTPTI 68
Query: 83  GAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSI 120
           GA   ++++  F++ T      F A      + W++ I
Sbjct: 69  GAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRI 106

>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain Of Pepp1 Length = 123

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 31  GWLTKQ-GEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASC-LTVKGAEDVL 88
           GWL KQ    ++ W+RRWFVL    LF++K+S   R     G + + S  +   G     
Sbjct: 15  GWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDS---REESVLGSVLLPSYNIRPDGPGAPR 71
Query: 89  NKQYAFELSTRTETMYFI-ADSEKEKEDWINSIGRS 123
            +++ F         Y + AD+ ++   W+ ++GR+
Sbjct: 72  GRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRA 107

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	2e-37
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	1e-35
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	8e-34
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	1e-33
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	1e-32
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	1e-31
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	8e-31
2d9y_A	117	Pleckstrin homology domain-containing protein fami	1e-30
2dkp_A	128	Pleckstrin homology domain-containing family A mem	3e-30
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	3e-30
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	9e-30
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	1e-29
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	4e-29
1wi1_A	126	Calcium-dependent activator protein for secretion,	4e-29
2yry_A	122	Pleckstrin homology domain-containing family A mem	5e-29
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	8e-29
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	3e-28
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	2e-27
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	5e-27
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	6e-27
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	9e-27
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	2e-26
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	5e-26
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	5e-26
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	2e-25
3cxb_B	112	Pleckstrin homology domain-containing family M mem	2e-25
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	2e-24
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	6e-24
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	7e-24
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	1e-23
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	2e-23
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	2e-22
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	2e-22
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	3e-22
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	4e-22
2d9v_A	130	Pleckstrin homology domain-containing protein fami	1e-21
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	2e-21
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	6e-19
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	1e-17
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	2e-17
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	9e-17
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	1e-16
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	2e-16
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	1e-15
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	2e-15
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	2e-15
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	5e-15
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	8e-15
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	1e-14
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	1e-13
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	1e-13
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	6e-13
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	9e-13
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	2e-12
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	3e-12
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	2e-11
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	3e-11
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	4e-11
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	5e-11
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	4e-10
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	6e-09
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	7e-09
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	1e-08
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	2e-08
3ml4_A	224	Protein DOK-7; tyrosine phosphorylation, adapter p	2e-07
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	3e-07
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	3e-04
3p6a_A	377	RHO guanine nucleotide exchange factor 1; regulati	6e-04
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	8e-04

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Length = 126

 Score =  122 bits (309), Expect = 2e-37
 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 4/125 (3%)

Query: 11  QTNQLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPR 70
           QT +  D       S   + G+LTKQG  +KTW+ RWF L + +L +FK+     + +P 
Sbjct: 2   QTGRTEDDLVPTAPSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQM---SPEPI 58

Query: 71  GVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRS 130
            ++ +  C  V+       +   F L     T Y  A +  E ++WI  +   + Q  + 
Sbjct: 59  RILDLTECSAVQFDYS-QERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQIRKQ 117

Query: 131 VTDSE 135
           +   E
Sbjct: 118 LNQGE 122

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 113

 Score =  118 bits (297), Expect = 1e-35
 Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 4/97 (4%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL 88
           R G+L K+G    TW+  W VL +  + ++K+ +    + P+G+IP+         +D  
Sbjct: 7   REGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKS---DNSPKGMIPLKGSTLTSPCQDFG 63

Query: 89  NKQYAFELSTRTETMYFI-ADSEKEKEDWINSIGRSI 124
            + + F+++T  +  +F  A   +E++ W+  I ++I
Sbjct: 64  KRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAI 100

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score =  113 bits (285), Expect = 8e-34
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 3/99 (3%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL 88
           + G++ K+G   K W  RWFVLK   + ++           +G I +     V+   D  
Sbjct: 10  KQGYMMKKGHRRKNWTERWFVLKPNIISYYVSED---LKDKKGDILLDENCCVESLPDKD 66

Query: 89  NKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQH 127
            K+  F +    +T    A  +K+K++WI +I  +I   
Sbjct: 67  GKKCLFLVKCFDKTFEISASDKKKKQEWIQAIHSTIHLL 105

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score =  113 bits (285), Expect = 1e-33
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)

Query: 25  SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA 84
           S   ++G+  KQG  +K W+RR+F L +  + +FK        +P  VIP+     V+  
Sbjct: 12  SAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSEL---EKEPLRVIPLKEVHKVQEC 68

Query: 85  E--DVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHS 128
           +  D++ +   FE+ T + T Y  ADS +E   WI ++  +IV   
Sbjct: 69  KQSDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQR 114

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 129

 Score =  111 bits (278), Expect = 1e-32
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 8/123 (6%)

Query: 10  GQTNQLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKP 69
           G +       + E      + G+L KQG   K W+ R FVL++   F          ++P
Sbjct: 1   GSSGSSGSLSTVELSGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRP 60

Query: 70  RGVIPVASCLTVKGAE-------DVLNKQYAFELSTRTETMYFI-ADSEKEKEDWINSIG 121
            G   +   L     +           +   F++ T+ +T Y+I A S+ E+ +WI +I 
Sbjct: 61  VGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIK 120

Query: 122 RSI 124
           +  
Sbjct: 121 KLT 123

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 118

 Score =  108 bits (271), Expect = 1e-31
 Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 12/109 (11%)

Query: 25  SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVK-G 83
           S P + GWL KQ   +K W++R+FVL+  +L+++K+      +KP+G + +  C   +  
Sbjct: 6   SGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEE---DTKPQGCMYLPGCTIKEIA 62

Query: 84  AEDVLNKQYAFELSTRTE--------TMYFIADSEKEKEDWINSIGRSI 124
                  ++ FE+   +         +   +A S+ E E+W+  + R  
Sbjct: 63  TNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVA 111

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 109

 Score =  105 bits (265), Expect = 8e-31
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 25  SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA 84
           S    SG+L +     K W+  WFV+K   L+ +  S            P+    TV   
Sbjct: 6   SGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASE---DVAALESQPLLGF-TVTLV 61

Query: 85  EDVLNKQYAFELSTRTETMY-FIADSEKEKEDWINSIGRSIVQHSRS 130
           +D  ++   F+L  +    Y F AD     + WI++     V    S
Sbjct: 62  KDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTVSGPSS 108

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 117

 Score =  105 bits (264), Expect = 1e-30
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 6/111 (5%)

Query: 25  SNPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASC-LTVK 82
           +   ++GWL KQ    +K W +RWFVL    LF++K+          G IP+ S  +   
Sbjct: 9   APVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEK---EESILGSIPLLSFRVAAV 65

Query: 83  GAEDVLNKQYAFELST-RTETMYFIADSEKEKEDWINSIGRSIVQHSRSVT 132
              D +++++ F+       T +F A+S +E+E WI ++G +    S   +
Sbjct: 66  QPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQSGPSS 116

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Length = 128

 Score =  105 bits (263), Expect = 3e-30
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 6/109 (5%)

Query: 25  SNPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASC-LTVK 82
           +   R GWL KQ    +K W++RWFVL    LF++++          G I + S  + + 
Sbjct: 19  APVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEK---EEGILGSILLPSFQIALL 75

Query: 83  GAEDVLNKQYAFELSTRTE-TMYFIADSEKEKEDWINSIGRSIVQHSRS 130
            +ED +N++YAF+ +     T YF  D+ KE E W+ ++  + +  +  
Sbjct: 76  TSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQTSG 124

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A Length = 129

 Score =  104 bits (262), Expect = 3e-30
 Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 10/128 (7%)

Query: 10  GQTNQLSDYDSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLK--QGKLFWFKESTVTRAS 67
           G +         EF     + G L KQG   K W+ R F+L+     L ++  +      
Sbjct: 1   GSSGSSGVILKEEFRGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAE--- 57

Query: 68  KPRGVIPVASCLTVKGAEDVLNK----QYAFELSTRTETMYFI-ADSEKEKEDWINSIGR 122
            P G I +  C+      +   +    +  FE+ T  E  YF+ A + KE+ +WI +I  
Sbjct: 58  DPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQM 117

Query: 123 SIVQHSRS 130
           +       
Sbjct: 118 ASRTGKSG 125

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Length = 123

 Score =  103 bits (259), Expect = 9e-30
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 25  SNPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASC-LTVK 82
                 GWL KQ    ++ W+RRWFVL    LF++K+S         G + + S  +   
Sbjct: 9   LPVHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSR---EESVLGSVLLPSYNIRPD 65

Query: 83  GAEDVLNKQYAFELST-RTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSE 135
           G      +++ F        T    AD+ ++   W+ ++GR+            
Sbjct: 66  GPGAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASRAEGDDYGQPR 119

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} Length = 228

 Score =  106 bits (265), Expect = 1e-29
 Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 11/123 (8%)

Query: 25  SNPERSGWLTKQGEY-----IKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCL 79
               + GWL   G        + W++RWFVL+Q KL +F+  +     K +G + V S  
Sbjct: 56  QEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDS---EEKLKGTVEVRSAK 112

Query: 80  TVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSEIVDY 139
            +    D  NK+   ++     T + IA+S ++   W + + +      + + +      
Sbjct: 113 EI---IDNTNKENGIDIIMADRTFHLIAESPEDASQWFSVLSQVHSSTDQEIREMHDEQA 169

Query: 140 DSK 142
           + +
Sbjct: 170 NPQ 172

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Length = 117

 Score =  101 bits (254), Expect = 4e-29
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 11/114 (9%)

Query: 25  SNPERSGWLTKQGEYIKTWRRRWFVLKQGK--LFWFKESTVTRASKPRGVIPVASCLTVK 82
           S     G L K+G ++K W+ RWFVL + K  L ++        ++ +GVI +A    V 
Sbjct: 6   SGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRM---DTECKGVIDLAEVEAVA 62

Query: 83  ------GAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRS 130
                 GA   ++++  F++ T      F A      + W++ I   +     S
Sbjct: 63  PGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLSSGPSS 116

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 126

 Score =  101 bits (254), Expect = 4e-29
 Identities = 24/111 (21%), Positives = 52/111 (46%), Gaps = 4/111 (3%)

Query: 25  SNPERSGWLTKQGEYI-KTWRRRWFVLKQGKLFWFK-ESTVTRASKPRGVIPVASCL--T 80
           S  + SG+L   G+ + K W++R+FVL Q   + F   S   + ++P+ ++ +       
Sbjct: 6   SGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDY 65

Query: 81  VKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSV 131
                 +   +  F      +T+ F +D E+++  W+ ++ R+  Q  + V
Sbjct: 66  TDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQSHKPV 116

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 122

 Score =  101 bits (254), Expect = 5e-29
 Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 6/106 (5%)

Query: 25  SNPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASC-LTVK 82
           +   ++GWL KQ    +K W +RWFVL    LF++K+          G IP+ S  +   
Sbjct: 20  APVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEK---EESILGSIPLLSFRVAAV 76

Query: 83  GAEDVLNKQYAFELST-RTETMYFIADSEKEKEDWINSIGRSIVQH 127
              D +++++ F+       T +F A+S +E+E WI ++G +    
Sbjct: 77  QPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQ 122

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 115

 Score =  100 bits (252), Expect = 8e-29
 Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 9/107 (8%)

Query: 25  SNPERSGWLTKQG-EYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKG 83
           S   +SGWL K   +  + +++RW       + ++           +G+IP+++  TV+ 
Sbjct: 6   SGKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEK---EMYSKGIIPLSAISTVRV 62

Query: 84  AEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRS 130
                     FE+ T   T  F  + E+E+ DWI+ +  ++   S +
Sbjct: 63  -----QGDNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKSQSLT 104

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Length = 109

 Score = 99.4 bits (248), Expect = 3e-28
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 10/103 (9%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLK--QGKLFWFKESTVTRASKPRGVIPVASCLTVKGAED 86
           + G L KQG   K W+ R F+L+     L ++  +       P G I +  C+      +
Sbjct: 9   KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAE---DPLGAIHLRGCVVTSVESN 65

Query: 87  VLNK----QYAFELSTRTETMYFI-ADSEKEKEDWINSIGRSI 124
              +    +  FE+ T  E  YF+ A + KE+ +WI +I  + 
Sbjct: 66  SNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 108

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Length = 108

 Score = 97.1 bits (242), Expect = 2e-27
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 10/106 (9%)

Query: 26  NPERSGWLTKQGE----YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTV 81
           +  + G+L K+ +    +   W++RW V+ +G  +++       + +P+G   +      
Sbjct: 2   SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEK---SKQPKGTFLIKGYSVR 58

Query: 82  KGAE--DVLNKQYAFELSTRTE-TMYFIADSEKEKEDWINSIGRSI 124
                     K+  FEL+++   T  F A S  E  DW++ I   +
Sbjct: 59  MAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLL 104

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A* Length = 127

 Score = 97.0 bits (241), Expect = 5e-27
 Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 27/125 (21%)

Query: 26  NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE 85
           NP+R GWL K G  +KTW+RRWF+L    L++F+ +T     +PRG+IP+ +  +++   
Sbjct: 4   NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDK---EPRGIIPLENL-SIREVL 59

Query: 86  DVLNKQYAFELST----------------------RTETMYFIADSEKEKEDWINSIGRS 123
           D   K   FEL                                A S +EKE+W+ SI  S
Sbjct: 60  DP-RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKAS 118

Query: 124 IVQHS 128
           I +  
Sbjct: 119 ISRDP 123

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A Length = 125

 Score = 96.5 bits (240), Expect = 6e-27
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 8/118 (6%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQ-GKLFWFKEST--VTRASKPRGVIPVASCLTVKGAE 85
           + GWL K+GEYIKTWR R+F+LK  G    +KE    V +   P     VA C  +K   
Sbjct: 10  KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 69

Query: 86  DVLN--KQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSEIVDYDS 141
              N       + +T  E  +   ++ +E+E+W  +I    V       + E +D+ S
Sbjct: 70  PRPNTFIIRCLQWTTVIERTFH-VETPEEREEWTTAIQT--VADGLKKQEEEEMDFRS 124

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Length = 148

 Score = 96.9 bits (241), Expect = 9e-27
 Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 10/118 (8%)

Query: 25  SNPERSGWLTKQGE----YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLT 80
               ++G+L K+ +        W++RW  L +   +++         + +G   +     
Sbjct: 15  PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDK---DKQQKGEFAIDGYDV 71

Query: 81  VKGAEDVLN--KQYAFELSTRTE-TMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSE 135
                   +  K   FE+    +    F A S K+ E+W+  +   +      V   +
Sbjct: 72  RMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQDLGSDVIPED 129

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} Length = 94

 Score = 94.4 bits (235), Expect = 2e-26
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 28  ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDV 87
           ER G L+K   YI  W+ RW VLK   L ++K    T     RG I ++  +      D 
Sbjct: 2   ERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDETE-YGCRGSICLSKAVITPHDFD- 59

Query: 88  LNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSI 124
              +  F++S      Y  A     ++ WI++I +  
Sbjct: 60  ---ECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHK 93

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 150

 Score = 94.7 bits (235), Expect = 5e-26
 Identities = 35/128 (27%), Positives = 64/128 (50%), Gaps = 17/128 (13%)

Query: 28  ERSGWLTKQGE------YIKTWRRRWFVLKQ-----GKLFWFKESTVTRASKPRGVIPVA 76
            + GWL K          +++++RR+F L Q       L ++K+  +++  +P+G I + 
Sbjct: 19  TKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISK--EPKGSIFLD 76

Query: 77  SCLTVKGAEDVLNKQYAFELSTRTETMYFI-ADSEKEKEDWINSIGRSIVQHSRSVTDSE 135
           SC+ V        +++AFEL  + ++ Y + ADSE E E+WI  +   I+Q +      E
Sbjct: 77  SCMGVVQNNK--VRRFAFELKMQDKSSYLLAADSEVEMEEWITIL-NKILQLNFEAAMQE 133

Query: 136 IVDYDSKR 143
             + DS  
Sbjct: 134 KRNGDSHE 141

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 93.6 bits (233), Expect = 5e-26
 Identities = 21/110 (19%), Positives = 46/110 (41%), Gaps = 10/110 (9%)

Query: 25  SNPERSGWLTKQGE--YIKTWRRRWFVLKQGK--LFWFKESTVTRASKPRGVIPVASCLT 80
           S  +  G+L+K G    I+ W+ RWF   + K  L++ + +     + P   I ++S + 
Sbjct: 6   SGKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQ---DANPLDSIDLSSAVF 62

Query: 81  VKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRS 130
                    ++  FE+ T +  +   A +++    W+  +     +   S
Sbjct: 63  DC---KADAEEGIFEIKTPSRVITLKAATKQAMLYWLQQLQMKRWEFHNS 109

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A Length = 120

 Score = 92.8 bits (230), Expect = 2e-25
 Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 15/119 (12%)

Query: 24  WSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCL---- 79
                +SG+L ++ +++K++ + ++VL    L  FK +   +   P   + ++ C     
Sbjct: 3   PFTEIKSGFLERRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTEH 62

Query: 80  ---TVKGAEDVLNKQYAFELS-------TRTETMYFIADSEKEKEDWINSIGRSIVQHS 128
                  + +       F L         R     F ADS +    W +++ + +   S
Sbjct: 63  SRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNL-KILTSTS 120

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B Length = 112

 Score = 92.2 bits (229), Expect = 2e-25
 Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 11/106 (10%)

Query: 29  RSGWLTKQGE----YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA 84
           + G L  +        + W+  + VL  G L+ + + T      P   + +       G 
Sbjct: 2   KEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRT---DVIPLLSVNMGGE-QCGGC 57

Query: 85  EDVLN--KQYAFELSTRTETMY-FIADSEKEKEDWINSIGRSIVQH 127
                  + +AF++           A+SE E  +W+  + +++ + 
Sbjct: 58  RRANTTDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVSKG 103

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 89.5 bits (222), Expect = 2e-24
 Identities = 24/111 (21%), Positives = 51/111 (45%), Gaps = 10/111 (9%)

Query: 25  SNPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKG 83
              E+ G+L K+ +   K W+RR   +K G L          +++    + + +C  VK 
Sbjct: 8   YGSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISH----ATSNRQPAKLNLLTC-QVKP 62

Query: 84  AEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDS 134
             +    + +F+L +   T +F A+ E++   WI+ +  S  + + ++  S
Sbjct: 63  NAE---DKKSFDLISHNRTYHFQAEDEQDYVAWISVLTNSK-EEALTMAFS 109

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 88.8 bits (220), Expect = 6e-24
 Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 25  SNPERSGWLTKQGEYIKTWRRRWFVLKQ--GKLFWFKESTVTRASKPRGVIPVASCLTVK 82
           S     G+L K    +  W+ R+FVL    G L +F  +  +R  KPRG + +A  +   
Sbjct: 6   SGENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFV-NEQSRNQKPRGTLQLAGAVISP 64

Query: 83  GAEDVLNKQYAFELSTRT-ETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDS 134
             ED     + F ++  + E     A   KE++ W++ +      H+ ++  +
Sbjct: 65  SDED----SHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEAIGKN 113

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A Length = 103

 Score = 87.9 bits (218), Expect = 7e-24
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 30  SGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLN 89
            G L K   Y+  W+ RWFVL  G L ++  S        +G I +A C     + D   
Sbjct: 2   EGVLYKWTNYLTGWQPRWFVLDNGILSYYD-SQDDVCKGSKGSIKMAVCEIKVHSAD--- 57

Query: 90  KQYAFEL-STRTETMYFIADSEKEKEDWINSIGRSIVQHSRS 130
                EL     +  Y  A +  E++ W+ ++G S    + +
Sbjct: 58  -NTRMELIIPGEQHFYMKAVNAAERQRWLVALGSSKASLTDT 98

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A Length = 211

 Score = 90.6 bits (224), Expect = 1e-23
 Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 10/107 (9%)

Query: 25  SNPERSGWLTKQGE----YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLT 80
               ++G+L K+ +        W++RW  L +   +++         + +G   +     
Sbjct: 104 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDK---DKQQKGEFAIDGYDV 160

Query: 81  VKGAE--DVLNKQYAFELSTRTE-TMYFIADSEKEKEDWINSIGRSI 124
                      K   FE+    +    F A S K+ E+W+  +   +
Sbjct: 161 RMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL 207

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 126

 Score = 87.7 bits (217), Expect = 2e-23
 Identities = 17/102 (16%), Positives = 44/102 (43%), Gaps = 7/102 (6%)

Query: 30  SGWLT-KQGEYIKTWRRRWFVLK--QGKLFWFKES--TVTRASKPRGVIPVASCLTVKGA 84
            G+L  +  E    + RR+F+L      L W+ ++   +   +   G + +     V  A
Sbjct: 18  CGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIA 77

Query: 85  EDVL--NKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSI 124
                    + F ++  ++  +  A+ +K+ +DW+ ++ ++ 
Sbjct: 78  TPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQAS 119

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 107

 Score = 84.5 bits (209), Expect = 2e-22
 Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 7/107 (6%)

Query: 25  SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA 84
           S  E S +L         W+ RW  ++   L ++++   ++    +  + +  C  V   
Sbjct: 6   SGLETSSYLNVLVN--SQWKSRWCSVRDNHLHFYQDRNRSK--VAQQPLSLVGCEVVPDP 61

Query: 85  EDVLNKQYAFELST-RTETMYFIADSEKEKEDWINSIGRSIVQHSRS 130
               +  Y+F +     E     A S +E   W+  +         S
Sbjct: 62  SP--DHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSESGSGPSS 106

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens} Length = 134

 Score = 85.1 bits (210), Expect = 2e-22
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 25/130 (19%)

Query: 25  SNPERSGWLT--KQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVK 82
           S+ E  G+LT  +       W RRW VL    + ++      +   P G I +A+C + +
Sbjct: 3   SSVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQ 62

Query: 83  GA---EDVLNKQYAFELSTR--------------------TETMYFIADSEKEKEDWINS 119
                 +   ++  FEL T                         +  AD+++E++ W+  
Sbjct: 63  IEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQK 122

Query: 120 IGRSIVQHSR 129
           + + +V    
Sbjct: 123 LNQVLVDIRL 132

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 149

 Score = 85.2 bits (210), Expect = 3e-22
 Identities = 13/99 (13%), Positives = 34/99 (34%), Gaps = 4/99 (4%)

Query: 31  GWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNK 90
           G+L  +    + +   W  L+   LF++ +    ++      + +     +         
Sbjct: 22  GFLLIKRSGYREYEHYWTELRGTTLFFYTDK---KSIIYVDKLDIVDLTCLTEQNSTEKN 78

Query: 91  QYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSR 129
              F L    E +    ++ +  E+W   I  ++ + S 
Sbjct: 79  CAKFTLVLPKEEVQLKTENTESGEEWRGFI-LTVTELSV 116

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A Length = 112

 Score = 83.8 bits (207), Expect = 4e-22
 Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 14/103 (13%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQ-GKLFWFKESTVTRASKPRGVIPVAS-CLTVKGAED 86
           +SGWL +Q   +K W++ WF L   G L ++ + T          + +   C+ ++  ++
Sbjct: 7   KSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQT---RQNIEDKVHMPMDCINIRTGQE 63

Query: 87  V--------LNKQYAFELSTRTETMYFI-ADSEKEKEDWINSI 120
                     +K    ++  R      + A+S  +   W  ++
Sbjct: 64  CRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTL 106

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 83.5 bits (206), Expect = 1e-21
 Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 10/115 (8%)

Query: 28  ERSGWLTKQGEYIKTWRRRWFVLKQ-GKLFWFKESTVTRASKPRGVIPVASCLTVKGAE- 85
            R GWL +Q   ++ W+R WF L   G L ++ + T  +  + R VI         G E 
Sbjct: 9   VRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDET-AQDEEDRVVIHFNVRDIKVGQEC 67

Query: 86  ------DVLNKQYAFELSTRTETMYFI-ADSEKEKEDWINSIGRSIVQHSRSVTD 133
                 +  ++     ++ R  +   + A++  +   W  ++  +    + +   
Sbjct: 68  QDVQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTPAPAGAT 122

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A* Length = 264

 Score = 86.1 bits (212), Expect = 2e-21
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 14/111 (12%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQG-------KLFWFK--ESTVTRASKPRGVIPVASCL 79
           + G+L K     K+  +R+FVL+         +L +++  +    ++S P+  IP+ SC 
Sbjct: 12  KVGYLRKP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCF 67

Query: 80  TVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRS 130
            +    D  NK +   L TR E     ADSE E++ W  ++ +   +    
Sbjct: 68  NINKRADSKNK-HLVALYTRDEHFAIAADSEAEQDSWYQALLQLHNRAKGH 117

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Length = 164

 Score = 77.1 bits (189), Expect = 6e-19
 Identities = 19/114 (16%), Positives = 44/114 (38%), Gaps = 12/114 (10%)

Query: 17  DYDSTEFWSNPERSGWLTKQGE-----YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRG 71
            +  +    N      L K+ +         ++ R FVL +  L +++     +    +G
Sbjct: 5   HHHHSHMNFNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKK--YRKG 62

Query: 72  VIPVASCLTVKGAEDVLNK-----QYAFELSTRTETMYFIADSEKEKEDWINSI 120
            I V+    V+  ++         +Y F++     T+Y  A S + ++ W+  +
Sbjct: 63  FIDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHDANTLYIFAPSPQSRDLWVKKL 116

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A Length = 168

 Score = 74.1 bits (181), Expect = 1e-17
 Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 12/122 (9%)

Query: 25  SNPERSGWLT----------KQGEYIKTWRRRWFVLKQGKLFWFK-ESTVTRASKPRGVI 73
           S+  + GWL           + G  I+ W++ + VL+   L+ +K +   T  S+    I
Sbjct: 1   SDAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPI 60

Query: 74  PVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTD 133
            V +C  +  +     ++  F L+T      F A+   +   WI +I  S   +      
Sbjct: 61  SVNAC-LIDISYSETKRKNVFRLTTSDCECLFQAEDRDDMLAWIKTIQESSNLNEEDTGV 119

Query: 134 SE 135
           + 
Sbjct: 120 TN 121

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A* Length = 129

 Score = 72.2 bits (177), Expect = 2e-17
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 16/117 (13%)

Query: 28  ERSGWLTKQGEYI------KTWRRRWFVLKQGKLFWFKESTVTRA--------SKPRGVI 73
           E+SG L             K W   W VL    L +++E   T          S+P   +
Sbjct: 13  EKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSV 72

Query: 74  PVASCLTVKGAEDVLNKQYAFELSTRTETMY-FIADSEKEKEDWINSIGRSIVQHSR 129
            +     +     + +++    + T     +   +D E E   W  ++   I +  R
Sbjct: 73  DLRGA-ALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIERLVR 128

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens} Length = 124

 Score = 70.3 bits (172), Expect = 9e-17
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 17/116 (14%)

Query: 28  ERSGWLTKQGEY-------IKTWRRRWFVLKQGKLFWFKES---------TVTRASKPRG 71
           +++G L +            K W   W VL+ G L +FK+S           ++ S P  
Sbjct: 9   DKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEY 68

Query: 72  VIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFI-ADSEKEKEDWINSIGRSIVQ 126
            + +         +D  +++   EL +R  + Y I  DSE     W  +I + I +
Sbjct: 69  TVELRGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQE 124

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 137

 Score = 70.4 bits (172), Expect = 1e-16
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 9/101 (8%)

Query: 27  PERSGWLT---KQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKG 83
           PE    L     +   +K +R+ W V K+  L ++K         P   + +  C  V  
Sbjct: 9   PELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPG-DPIQQLNLKGC-EVVP 66

Query: 84  AEDVLNKQYAFELSTRTE----TMYFIADSEKEKEDWINSI 120
             +V  +++  +L   +      +Y     E++   W+   
Sbjct: 67  DVNVSGQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGC 107

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 130

 Score = 69.8 bits (170), Expect = 2e-16
 Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 30/124 (24%)

Query: 25  SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA 84
           S    + WL K    +K+W + W VLK G L  +K        +  G + + +C  ++  
Sbjct: 6   SGIVMADWL-KIRGTLKSWTKLWCVLKPGVLLIYKTQKNG---QWVGTVLLNACEIIERP 61

Query: 85  EDVLNKQYAFELST------------------------RTETMYFIADSEKEKEDWINSI 120
                  + F+L                           +  +   A SE +   W++++
Sbjct: 62  SK--KDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDAL 119

Query: 121 GRSI 124
             ++
Sbjct: 120 ELAL 123

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 112

 Score = 67.3 bits (164), Expect = 1e-15
 Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 8/102 (7%)

Query: 25  SNPERSGWLTKQGEYIKTWRRRWFVLKQGK---LFWFKESTVTRASKPRGVIPVASC-LT 80
           S     G L    E  +TW   W  +       L     S   +  +    IP+ SC L+
Sbjct: 6   SGSLLCGPLRLS-ESGETWSEVWAAIPMSDPQVLHLQGGS---QDGRLPRTIPLPSCKLS 61

Query: 81  VKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGR 122
           V   E+ L+  + ++L    ++ Y  A S + ++ W+ ++  
Sbjct: 62  VPDPEERLDSGHVWKLQWAKQSWYLSASSAELQQQWLETLST 103

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386

 Score = 70.9 bits (173), Expect = 2e-15
 Identities = 18/109 (16%), Positives = 46/109 (42%), Gaps = 11/109 (10%)

Query: 26  NPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVAS------- 77
           N  + G++ K G    + +R+RWF +   +L +FK+      +  RG + + S       
Sbjct: 268 NYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDP---LDAFARGEVFIGSKESGYTV 324

Query: 78  CLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQ 126
                 +    +  +   + T      F  ++E ++ +W+ +  +++ +
Sbjct: 325 LHGFPPSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQKAVDR 373

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 70.9 bits (174), Expect = 2e-15
 Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQ-GKLFWFKES--TVTRASKPRGVIPVASCLTVKGAE 85
           + GWL K+GEYIKTWR R+F+LK  G    +KE    V +   P     VA C  +K   
Sbjct: 8   KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 67

Query: 86  DVLNK--QYAFELSTRTETMYFIADSEKEKEDWINSI 120
              N       + +T  E  +   ++ +E+E+W  +I
Sbjct: 68  PRPNTFIIRCLQWTTVIERTFH-VETPEEREEWTTAI 103

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Length = 385

 Score = 69.6 bits (169), Expect = 5e-15
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 8/104 (7%)

Query: 34  TKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYA 93
            K G    TW R+++  + G L       V         + + +C +V   +   +++Y 
Sbjct: 288 NKTGLVSSTWDRQFYFTQGGNLMSQARGDV----AGGLAMDIDNC-SVMAVDCE-DRRYC 341

Query: 94  FELST--RTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSE 135
           F++++    ++    A+S+K+ E+WI +I     Q   S    E
Sbjct: 342 FQITSFDGKKSSILQAESKKDHEEWICTINNISKQIYLSENPEE 385

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A Length = 125

 Score = 65.5 bits (159), Expect = 8e-15
 Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 13/112 (11%)

Query: 29  RSGWLTKQGEYIK--TWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAED 86
           R GWLT     I     +  WFVL    L W+K+       + + ++ V +       + 
Sbjct: 14  RKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDE---EKEKKYMLSVDNLKLRDVEKG 70

Query: 87  VLNKQYAFELST--------RTETMYFIADSEKEKEDWINSIGRSIVQHSRS 130
            ++ ++ F L              +    ++++E + W  S  R+ V   R 
Sbjct: 71  FMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPERV 122

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens} Length = 128

 Score = 64.9 bits (157), Expect = 1e-14
 Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 22/122 (18%)

Query: 25  SNPERSGWLTKQGE--YIKTWRRRWFVLKQ-GKLFWFKESTVTRASKPRGVIP------- 74
           + P +  +L K+      K W++++  L   G L +         S     +        
Sbjct: 2   AIPIKQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVK 61

Query: 75  ------------VASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGR 122
                            +    +          +S+  +T +F A S +E++ W+ +I  
Sbjct: 62  VPGKRPPRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIES 121

Query: 123 SI 124
            I
Sbjct: 122 QI 123

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus} Length = 279

 Score = 65.4 bits (158), Expect = 1e-13
 Identities = 23/120 (19%), Positives = 45/120 (37%), Gaps = 17/120 (14%)

Query: 27  PERSGWLTKQGEYI------------KTWRRRWFVLKQGKLFWFK---ESTVTRASKPRG 71
             ++G L  +   +            + W+  W  LK   LF+++    S +   S P+ 
Sbjct: 11  VRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKH 70

Query: 72  VIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFI-ADSEKEKEDWINSIGRSIVQHSRS 130
            + V + + V+   +   K + F LS      +     S+ E E+WI +I  +       
Sbjct: 71  AVWVENSI-VQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAAVAR 129

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 123

 Score = 61.9 bits (150), Expect = 1e-13
 Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 11/114 (9%)

Query: 28  ERSGWLTKQGEYI--------KTWRRRWFVLKQGKLFWFKESTVTRASKP-RGVIPVASC 78
           +  G L ++ E          ++W+  + VL++G L ++K++    A  P  G +PV+  
Sbjct: 9   QMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLA 68

Query: 79  L-TVKGAEDVLNKQYAFELSTRTETMYFI-ADSEKEKEDWINSIGRSIVQHSRS 130
                 A D   +++ F+L  +    Y   A  E E   W+  +  +I     S
Sbjct: 69  RAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASGPSS 122

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A* Length = 169

 Score = 61.5 bits (148), Expect = 6e-13
 Identities = 19/146 (13%), Positives = 45/146 (30%), Gaps = 31/146 (21%)

Query: 29  RSGWLTKQGE-----YIKTWRRRWFVLKQGKLFWFK-ESTVTRASKPRGVIPVASCLTV- 81
                 K+ +         +++  F+L   KL +++ +    R    +G I V     V 
Sbjct: 5   LESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVE 64

Query: 82  ------------------------KGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWI 117
                                   +    +    Y F++      +Y  + +E+ ++ WI
Sbjct: 65  TVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWI 124

Query: 118 NSIGRSIVQHSRSVTDSEIVDYDSKR 143
           + +   I  +S  V       +   +
Sbjct: 125 HQLKNVIRYNSDLVQKYHPCFWIDGQ 150

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A Length = 263

 Score = 62.7 bits (151), Expect = 9e-13
 Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 17/124 (13%)

Query: 28  ERSGWLTKQGEYI------------KTWRRRWFVLKQGKLFWFK---ESTVTRASKPRGV 72
            ++GWL  +                + W++ W  LK   L +++   +++  + S PR  
Sbjct: 12  RKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCA 71

Query: 73  IPVASCLTVKGAEDVLNKQYAFELSTRT-ETMYFIADSEKEKEDWINSIGRSIVQHSRSV 131
           +     + V+   +   K++ F LS    +   F A S+ + E+W+ +I  +        
Sbjct: 72  LFAEDSI-VQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASLFAKK 130

Query: 132 TDSE 135
              E
Sbjct: 131 HGKE 134

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus} Length = 126

 Score = 59.3 bits (143), Expect = 2e-12
 Identities = 19/120 (15%), Positives = 36/120 (30%), Gaps = 17/120 (14%)

Query: 27  PERSGWLTK-------QGEYIKTWRRRWFVLKQGKLFWFKESTVTRA------SKPRGVI 73
           P   G L +       +   + +W R W VL    L ++   ++         S P   +
Sbjct: 1   PTMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKV 60

Query: 74  PVASCLTVKGAEDVLNKQYAFELST--RTETMYFIADSEKEKEDWINSIGRSIVQHSRSV 131
            +     V+  +D       F+L+   +     F   S      W   +  +       V
Sbjct: 61  SIVGW-MVQLPDDP-EHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSSRPQV 118

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A* Length = 173

 Score = 59.7 bits (144), Expect = 3e-12
 Identities = 18/117 (15%), Positives = 46/117 (39%), Gaps = 14/117 (11%)

Query: 24  WSNPERSGWL---TKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLT 80
            S PE + ++     +   +K +++ W   K   +  +K    +    P   + +  C  
Sbjct: 44  TSIPELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESSG-TPAHQMNLRGC-E 101

Query: 81  VKGAEDVLNKQYAFEL----STRTETMYFIADSEKEKEDWIN-----SIGRSIVQHS 128
           V    ++  +++  +L    +     ++   D+EK+   W+      S G+++   S
Sbjct: 102 VTPDVNISGQKFNIKLLIPVAEGMNEIWLRCDNEKQYAHWMAACRLASKGKTMADSS 158

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 127

 Score = 56.7 bits (136), Expect = 2e-11
 Identities = 28/107 (26%), Positives = 40/107 (37%), Gaps = 13/107 (12%)

Query: 26  NPERSGWLTKQGE--YIKTWRRRWFVLKQGKL-------FWFKESTVTRASKPRGVIPVA 76
              + G+L  Q +  + K WRR    L  G                  R    R VI ++
Sbjct: 11  GAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLS 70

Query: 77  SCLTVKGAEDVLNK---QYAFELSTRTETMYFIADSEKEKEDWINSI 120
            CL V  A    +      AF L T  E +Y +A    E+ DW+ +I
Sbjct: 71  DCLRVAEAGGEASSPRDTSAFFLET-KERLYLLAAPAAERGDWVQAI 116

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1 Length = 122

 Score = 56.1 bits (135), Expect = 3e-11
 Identities = 14/114 (12%), Positives = 45/114 (39%), Gaps = 15/114 (13%)

Query: 25  SNPERSGWLTKQGEY--------IKTWRRRWFVLKQGKLFWFKESTVTRASK-----PRG 71
           +     G++T++ E+         ++W + +   K G++ ++K+    +++         
Sbjct: 6   AGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEP 65

Query: 72  VIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFI-ADSEKEKEDWINSIGRSI 124
              + +   ++ A D   K++   +      ++ + A  + E   W+ S+    
Sbjct: 66  SYDLQNA-AIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQS 118

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A Length = 106

 Score = 55.3 bits (133), Expect = 4e-11
 Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 11/101 (10%)

Query: 31  GWLTKQGEYI--------KTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCL--T 80
           G+L ++ E+         ++W   + V+   ++ ++K++    +  P       S     
Sbjct: 3   GFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAI 62

Query: 81  VKGAEDVLNKQYAFELSTRTETMYFI-ADSEKEKEDWINSI 120
            + A D   K++ F+L       Y   A  ++E   WI +I
Sbjct: 63  CEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAI 103

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A* Length = 347

 Score = 58.1 bits (140), Expect = 5e-11
 Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 27/121 (22%)

Query: 26  NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE 85
           NP+R GWL K G  +KTW+RRWF+L    L++F+ +T     +PRG+IP    L+++  E
Sbjct: 212 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDK---EPRGIIP-LENLSIREVE 267

Query: 86  DVLNKQYAFELSTRTETMYFI----------------------ADSEKEKEDWINSIGRS 123
           D   K   FEL   +     I                      A S +EKE+W+ SI  S
Sbjct: 268 DP-RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKAS 326

Query: 124 I 124
           I
Sbjct: 327 I 327

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens} Length = 256

 Score = 55.2 bits (132), Expect = 4e-10
 Identities = 15/106 (14%), Positives = 39/106 (36%), Gaps = 10/106 (9%)

Query: 25  SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCL--TVK 82
           S+PE  G+L  +    K+W++ +  L++  L+   + T       + +  +      ++ 
Sbjct: 130 SSPEIQGFLHVKELGKKSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLEDSNIFSLI 189

Query: 83  GAEDVLN--KQYAFEL------STRTETMYFIADSEKEKEDWINSI 120
                 N    +   +      +   E     A+ E+ +  W+ + 
Sbjct: 190 AGRKQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAF 235

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score = 50.0 bits (119), Expect = 6e-09
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 9/103 (8%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL 88
           R GW+          +R ++ L    +  F+ +T  R  K    IP++  LTV+ A++  
Sbjct: 10  REGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNRYYK---EIPLSEILTVESAQNFS 66

Query: 89  -----NKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQ 126
                   + FE+ T   T YF+ +         +  G    +
Sbjct: 67  LVPPGTNPHCFEIVTANAT-YFVGEMPGGTPGGPSGQGAEAAR 108

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus} Length = 117

 Score = 49.6 bits (118), Expect = 7e-09
 Identities = 17/113 (15%), Positives = 43/113 (38%), Gaps = 16/113 (14%)

Query: 30  SGWL---TKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVK--GA 84
            GWL    +       W +++ ++   K+ ++        S P  V+ +     V+    
Sbjct: 4   EGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQ 63

Query: 85  EDVLNKQ-----YAFELST------RTETMYFIADSEKEKEDWINSIGRSIVQ 126
            DV           F++          + +  +A+S +E++ W++ + + I +
Sbjct: 64  TDVYRADAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKKIPK 116

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 129

 Score = 49.3 bits (117), Expect = 1e-08
 Identities = 17/107 (15%), Positives = 39/107 (36%), Gaps = 8/107 (7%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL 88
           + GW+          +R ++ L    L  F+  +    SK    IP++  L +    D  
Sbjct: 10  KEGWMVHYTSRDNLRKRHYWRLDSKCLTLFQNES---GSKYYKEIPLSEILRISSPRDFT 66

Query: 89  -----NKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRS 130
                +  + FE+ T T   +   ++     + + +     +  ++S
Sbjct: 67  NISQGSNPHCFEIITDTMVYFVGENNGDSSHNPVLAATGVGLDVAQS 113

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 132

 Score = 48.4 bits (115), Expect = 2e-08
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 2/107 (1%)

Query: 25  SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA 84
            N      +  Q    +    R+F+L    L     S        +G IP+A  + V   
Sbjct: 26  GNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAG-MVVNRL 84

Query: 85  EDVLNKQYAFELSTRT-ETMYFIADSEKEKEDWINSIGRSIVQHSRS 130
           +++      FE++  T E +    ++ ++ ++W+  + R       S
Sbjct: 85  DEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKSGPSS 131

>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus} Length = 224

 Score = 47.1 bits (111), Expect = 2e-07
 Identities = 14/97 (14%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 41  KTWRRRWFVLKQGK-------LFWFKESTV-TRASKPRGVIPVASCLTVKGAEDVLNKQY 92
           K W+ RW VL++         +  +K+    ++  + R  + +     ++ A       +
Sbjct: 21  KKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPALPYEGLAH 80

Query: 93  AFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSR 129
              +   ++ +    DS +    W   I  ++ +  R
Sbjct: 81  TLAIICLSQAVMLGFDSHEAMCAWDTRIRYALGEVHR 117

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A Length = 124

 Score = 45.6 bits (107), Expect = 3e-07
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 9/103 (8%)

Query: 27  PERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRA------SKPRGVIPVASCLT 80
            ++ G L       + W R +  +   KL +  +   T        S  RG++ + +   
Sbjct: 12  HKQQGELYMWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNV 71

Query: 81  VKGAEDVLNKQYAFELSTRTE---TMYFIADSEKEKEDWINSI 120
           VK  +    K + F L  + +    + F  D  +E  +W  SI
Sbjct: 72  VKAPQGKNQKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSI 114

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B* Length = 113

 Score = 37.1 bits (86), Expect = 3e-04
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 68  KPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSI 124
           +   + P+   L V   +D    +  F+L    E+  F A++ K K +W+  +  + 
Sbjct: 51  RYNALYPLDR-LAVVNVKDNPPMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETK 106

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Length = 377

 Score = 37.6 bits (87), Expect = 6e-04
 Identities = 19/126 (15%), Positives = 39/126 (30%), Gaps = 20/126 (15%)

Query: 22  EFWSNPERSGWLTKQGE-YIKTWRRRW-------------FVLKQGKLFWFKESTVTRAS 67
           EF +       L  +G    +  + +               + +Q +    K  + T   
Sbjct: 248 EFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTP 307

Query: 68  KP------RGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIG 121
            P      R V+ + S +T + A D       F      +    +A +  E+++W   I 
Sbjct: 308 TPDGKTMLRPVLRLTSAMTREVATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALIT 367

Query: 122 RSIVQH 127
            +    
Sbjct: 368 ETAGSL 373

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434

 Score = 37.3 bits (86), Expect = 8e-04
 Identities = 10/63 (15%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 68  KPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQH 127
           + +  + VA+    +   +     YA ++ T    +   A S  E+++W   + R++ + 
Sbjct: 282 RLKNTLAVANMKVSRPVME--KVPYALKIETSESCLMLSASSCAERDEWYGCLSRALPED 339

Query: 128 SRS 130
            ++
Sbjct: 340 YKA 342

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
1wi1_A	126	Calcium-dependent activator protein for secretion,	99.94
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	99.93
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	99.92
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	99.92
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	99.92
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	99.92
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	99.91
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	99.91
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	99.91
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	99.91
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	99.91
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	99.91
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	99.9
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	99.9
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	99.9
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	99.9
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	99.9
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	99.9
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	99.9
2dkp_A	128	Pleckstrin homology domain-containing family A mem	99.89
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	99.89
2d9v_A	130	Pleckstrin homology domain-containing protein fami	99.89
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	99.89
2d9y_A	117	Pleckstrin homology domain-containing protein fami	99.89
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	99.89
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	99.89
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.89
3cxb_B	112	Pleckstrin homology domain-containing family M mem	99.89
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	99.88
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	99.88
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	99.88
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	99.88
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	99.88
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	99.88
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	99.88
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	99.88
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	99.88
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	99.88
2yry_A	122	Pleckstrin homology domain-containing family A mem	99.88
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	99.88
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	99.87
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	99.86
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	99.86
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	99.86
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	99.85
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	99.84
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	99.84
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	99.84
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	99.83
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	99.83
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	99.83
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	99.83
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.82
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	99.82
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	99.8
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	99.78
2fjl_A	150	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.77
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.77
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	99.76
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	99.76
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	99.73
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	99.73
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.68
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	99.62
4bbk_A	165	Kindlin-1, fermitin family homolog 1; PH domain, c	99.6
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	99.57
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	99.57
1w1g_A	151	HPDK1, 3-phosphoinositide dependent protein kinase	99.56
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.54
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	99.45
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	99.41
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	99.24
1v5m_A	136	SH2 and PH domain-containing adapter protein APS;	98.99
3ml4_A	224	Protein DOK-7; tyrosine phosphorylation, adapter p	98.96
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	98.85
3qwm_A	140	Iqsec1, IQ motif and SEC7 domain-containing protei	98.57
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	98.45
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	98.43
2lg1_A	185	A-kinase anchor protein 13; metal binding protein;	98.33
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	98.32
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	98.31
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	98.3
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	98.27
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	98.27
1mai_A	131	Phospholipase C delta-1; pleckstrin, inositol tris	98.26
3t06_A	418	PDZ-rhogef, RHO guanine nucleotide exchange factor	98.09
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	98.08
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.05
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	98.02
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	98.01
3p6a_A	377	RHO guanine nucleotide exchange factor 1; regulati	97.95
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	97.89
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	97.87
2z0q_A	346	XPLN, RHO guanine nucleotide exchange factor 3; DH	97.84
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	97.81
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	97.8
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	97.79
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	97.7
1foe_A	377	T-lymphoma invasion and metastasis inducing protei	97.39
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	97.21
2adz_A	178	Alpha-1-syntrophin; protein binding; NMR {Mus musc	97.03
1fho_A	119	UNC-89; pleckstrin homology domain, electrostatics	96.36
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	92.78
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	89.72
3ulb_A	121	Target of rapamycin complex 2 subunit AVO1; PH dom	88.65
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	88.04
3hie_A	171	Protein PSL1, exocyst complex component SEC3; PH d	86.09
3a58_A	320	Exocyst complex component SEC3; protein complex, P	82.92

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.94  E-value=2.1e-25  Score=140.83  Aligned_cols=106  Identities=21%  Similarity=0.397  Sum_probs=89.9

Q ss_pred             CCceEEEEEEeCC-CCCCceeEEEEEECCeEEEEe----cCCCCCCCCcceEEeCCceEEee--cCcccCCCcceEEEEe
Q 032301           26 NPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFK----ESTVTRASKPRGVIPVASCLTVK--GAEDVLNKQYAFELST   98 (143)
Q Consensus        26 ~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~~~----~~~~~~~~~~~~~i~l~~~~~v~--~~~~~~~~~~~f~i~~   98 (143)
                      .+.++|||+|+++ ..+.|++|||||.++.|+||+    ++.   ...|+++|.|.++++..  ..++...++++|.+.+
T Consensus         7 n~~~~G~L~KqG~~~~K~WKrRwFVL~~~~LyYfk~~~~~~~---~~~p~G~I~L~g~tV~~~~~~~~~~~~k~~F~~v~   83 (126)
T 1wi1_A            7 GMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREK---KAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVK   83 (126)
T ss_dssp             CEEEEEEEEEECSSSCCSCEEEEEEEEEEETTEEEEEECCSS---SSCCSEEEECSSCEEEECCCCSSCCSCSSEEEEEC
T ss_pred             CCceeEEEEEeCCCcccccceEEEEEeCCEEEEEEccccccc---CCCCceEEECCCcEEEEecCCcccccCceEEEEec
Confidence            4689999999986 458999999999999999999    665   66799999999986432  3333356789999999


Q ss_pred             CCeEEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCC
Q 032301           99 RTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDS  134 (143)
Q Consensus        99 ~~~~~~~~a~s~~e~~~W~~al~~~~~~~~~~~~~~  134 (143)
                      ++++|+|+|+|++|++.||.||..|+-+...+.++.
T Consensus        84 ~~~ty~~~Adseee~~~WikAi~~A~~~~~~~~~~~  119 (126)
T 1wi1_A           84 EGDTVIFASDDEQDRILWVQAMYRATGQSHKPVPPT  119 (126)
T ss_dssp             SSCEEEEECSSHHHHHHHHHHHHHHHTCSSCCCCCC
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHHHhccccCCCCCC
Confidence            999999999999999999999999998777776553

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.93  E-value=5.9e-24  Score=133.24  Aligned_cols=105  Identities=23%  Similarity=0.540  Sum_probs=91.6

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC-eEEE
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT-ETMY  104 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~-~~~~  104 (143)
                      .++++|||.|+++..+.|++|||||.++.|+||+++.   ...+.+.|+|.++..+....+..+++++|.|.+++ ++++
T Consensus         4 ~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~---~~~~~g~i~L~~~~~~~~~~~~~~~~~~F~i~~~~~r~~~   80 (113)
T 1pls_A            4 KRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKS---DNSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHF   80 (113)
T ss_dssp             CCSEEEEEEEESSSSSCCEEEEEEEETTEEEEESSTT---CSSCSEEEESSSCCEESSCCSSCCSSSEEEEEETTTEEEE
T ss_pred             CCcEEEEEEEeCCCCCCceEEEEEEECCEEEEEeCCC---CCCcceEEEcCCCEEEEecCCCCCCccEEEEEcCCCCEEE
Confidence            5789999999988889999999999999999999986   56799999999987765444445678999999987 8999


Q ss_pred             EEcCCHHHHHHHHHHHHHHHHhhCCCCCC
Q 032301          105 FIADSEKEKEDWINSIGRSIVQHSRSVTD  133 (143)
Q Consensus       105 ~~a~s~~e~~~W~~al~~~~~~~~~~~~~  133 (143)
                      |+|+|.+|+.+|+.+|+.++........+
T Consensus        81 l~a~s~~e~~~Wi~ai~~~~~~~~~~~~~  109 (113)
T 1pls_A           81 FQAAFLEERDAWVRDINKAIKCIEGLEHH  109 (113)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             EECCCHHHHHHHHHHHHHHHhccchhhhh
Confidence            99999999999999999999977665443

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.92  E-value=4.3e-24  Score=139.92  Aligned_cols=101  Identities=12%  Similarity=0.180  Sum_probs=86.1

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEEE
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYF  105 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~~  105 (143)
                      .++++|||.|+++..+.|++|||||+++.|+||+++.   +..+.+.|+|.+++.+........+.++|.|.+++++|+|
T Consensus        17 pv~keG~L~Kkg~~~k~WkrRWFvLk~~~L~Yyk~~~---d~~~~g~I~L~~~~~~~~~~~~~~~~~~F~I~t~~r~~~f   93 (149)
T 1x1f_A           17 PLYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKK---SIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPKEEVQL   93 (149)
T ss_dssp             CEEEEEEEEEECTTCCSCEEEEEEEETTEEEEESCSS---CSSCSEECCCSSCCEEEECCCTTSCCCEEEEECSSCCEEE
T ss_pred             CccEEEEEEEeCCCCCCceeEEEEEcCCEEEEEeCCC---ccccCcEEECCCceEEeeccCCCCcCcEEEEEcCCCEEEE
Confidence            4789999999998889999999999999999999987   5568899999997666332222245789999999999999


Q ss_pred             EcCCHHHHHHHHHHHHHHHHhhCC
Q 032301          106 IADSEKEKEDWINSIGRSIVQHSR  129 (143)
Q Consensus       106 ~a~s~~e~~~W~~al~~~~~~~~~  129 (143)
                      +|+|.+|+++|+.||+.++....+
T Consensus        94 ~A~s~ee~~eWi~aI~~v~~~~~p  117 (149)
T 1x1f_A           94 KTENTESGEEWRGFILTVTELSVP  117 (149)
T ss_dssp             ECSSHHHHHHHHHHHHHHHHSSCC
T ss_pred             EcCCHHHHHHHHHHHHHHHcccCC
Confidence            999999999999999998875443

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.92  E-value=4.1e-24  Score=137.25  Aligned_cols=99  Identities=21%  Similarity=0.454  Sum_probs=83.2

Q ss_pred             cCCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC---
Q 032301           24 WSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT---  100 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~---  100 (143)
                      .+.++++|||.|++ ..+.|++|||||.++.|+||+++.   +..|.+.|+|.+|++++...  .+++++|.|.++.   
T Consensus         5 ~~~v~k~GwL~K~g-~~k~WkrRWfVLk~~~L~yyk~~~---~~~p~G~I~L~~~~v~~~~~--~~~~~~F~i~~~~~~~   78 (130)
T 1v88_A            5 SSGIVMADWLKIRG-TLKSWTKLWCVLKPGVLLIYKTQK---NGQWVGTVLLNACEIIERPS--KKDGFCFKLFHPLEQS   78 (130)
T ss_dssp             SSSCCEEEEEEECC-SSSSCEEEEEEEETTEEEEESCSS---SCCCCEEEECSSCEECCCCT--TTSSCEEEEECTTCCC
T ss_pred             CCceEEEeEEEEeC-CCCCceEEEEEEECCEEEEECCCC---CCCceEEEEcCCCEEEECCC--CCCCeEEEEEcCCccc
Confidence            34579999999988 778999999999999999999997   56799999999987654322  2556999999764   


Q ss_pred             ---------------------eEEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301          101 ---------------------ETMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus       101 ---------------------~~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                                           +.|+|+|+|++|+++|+.||+.++....
T Consensus        79 i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~~~~  127 (130)
T 1v88_A           79 IWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKSGP  127 (130)
T ss_dssp             CSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTTTT
T ss_pred             cccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHhcCC
Confidence                                 2388999999999999999999987543

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.92  E-value=1.4e-23  Score=130.77  Aligned_cols=99  Identities=21%  Similarity=0.385  Sum_probs=86.2

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC-eEE
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT-ETM  103 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~-~~~  103 (143)
                      ..++++|||.|++...+.|++|||||.++.|+||+++.   ...|.+.|+|.++..+...+. ..++++|.|.+++ +++
T Consensus         6 ~~~~~~G~L~K~~~~~~~Wk~RwfvL~~~~L~yyk~~~---~~~~~~~i~L~~~~~~~~~~~-~~~~~~F~i~~~~~~~~   81 (109)
T 1wgq_A            6 SGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASE---DVAALESQPLLGFTVTLVKDE-NSESKVFQLLHKGMVFY   81 (109)
T ss_dssp             CSCSCEEEEEEESSTTSCCEEEEEEEETTEEEEESCTT---CSSCSEEEECSSEEEEECCCS-SCSSSEEEEEETTEEEE
T ss_pred             CCCeEEEEEEeCCCCCCCceeEEEEEeCCEEEEECCCC---cCccCceEECCCCEEEECCCC-CCCCcEEEEEeCCCeEE
Confidence            45789999999988789999999999999999999987   567999999999877765442 3567999999886 679


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHHhh
Q 032301          104 YFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus       104 ~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      +|+|+|++|+.+|+.+|+.++...
T Consensus        82 ~~~a~s~~e~~~Wi~al~~a~~~~  105 (109)
T 1wgq_A           82 VFKADDAHSTQRWIDAFQEGTVSG  105 (109)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHSCC
T ss_pred             EEECCCHHHHHHHHHHHHHHhccC
Confidence            999999999999999999988744

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.92  E-value=6.1e-24  Score=133.38  Aligned_cols=102  Identities=25%  Similarity=0.434  Sum_probs=89.3

Q ss_pred             cCCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEE
Q 032301           24 WSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETM  103 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~  103 (143)
                      ...++++|||.|++...+.|++|||||.++.|.||+++.   ...+.+.|+|.+++.+...++...++++|.|.++++++
T Consensus         5 ~~~~~~~G~L~K~~~~~~~Wk~R~fvL~~~~L~yy~~~~---~~~~~g~i~L~~~~~v~~~~~~~~~~~~F~i~~~~r~~   81 (115)
T 2dn6_A            5 SSGVLKQGYMMKKGHRRKNWTERWFVLKPNIISYYVSED---LKDKKGDILLDENCCVESLPDKDGKKCLFLVKCFDKTF   81 (115)
T ss_dssp             CCSCSEEEEEEEECTTSSCEEEEEEEECSSCEEEESSTT---CSSEEEEECCCTTCEEEEECCCTTCCSEEEEECSSCEE
T ss_pred             CCCceEEEEEEecCCCCCCcEEeEEEEECCEEEEeCCCC---CcccCcEEEecCcEEEEECCCCCCCeeEEEEEeCCCEE
Confidence            346899999999988889999999999999999999886   56799999999866666555445678999999999999


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301          104 YFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus       104 ~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                      +|+|+|.+|+.+|+.+|+.++....
T Consensus        82 ~l~a~s~~e~~~Wi~ai~~~~~~~~  106 (115)
T 2dn6_A           82 EISASDKKKKQEWIQAIHSTIHLLK  106 (115)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEcCCHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999988554

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.91  E-value=1.7e-23  Score=132.46  Aligned_cols=102  Identities=21%  Similarity=0.377  Sum_probs=87.8

Q ss_pred             ccCCCceEEEEEEeCC--CCCCceeEEEEEECC--eEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEe
Q 032301           23 FWSNPERSGWLTKQGE--YIKTWRRRWFVLKQG--KLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELST   98 (143)
Q Consensus        23 ~~~~~~~~G~L~k~~~--~~~~w~~r~~vL~~~--~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~   98 (143)
                      ....++++|||.|++.  ..+.|++|||||.++  .|+||+++.   +..|.+.|+|.++..+...   ...+++|.|.+
T Consensus         4 ~~~~~~~~G~L~K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~---~~~~~g~I~L~~~~~~~~~---~~~~~~F~i~~   77 (119)
T 2dhk_A            4 GSSGKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQ---DANPLDSIDLSSAVFDCKA---DAEEGIFEIKT   77 (119)
T ss_dssp             SCSCCCCEEEEEECSCSSSSCCCEEEEEEEETTTTEEEEESSTT---CCSCSEEEEGGGCEEEECT---TGGGCEEEEEC
T ss_pred             CCCCCcEEEEEEecCCCCCCCCceeEEEEEECCccEEEEECCCC---CcccccEEECCCCEEEecC---CCCCCEEEEEe
Confidence            3456789999999985  568999999999998  999999987   5579999999998776542   24578999999


Q ss_pred             CCeEEEEEcCCHHHHHHHHHHHHHHHHhhCCC
Q 032301           99 RTETMYFIADSEKEKEDWINSIGRSIVQHSRS  130 (143)
Q Consensus        99 ~~~~~~~~a~s~~e~~~W~~al~~~~~~~~~~  130 (143)
                      +.++|+|+|+|.+|+.+|+.+|+.++......
T Consensus        78 ~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~  109 (119)
T 2dhk_A           78 PSRVITLKAATKQAMLYWLQQLQMKRWEFHNS  109 (119)
T ss_dssp             SSCCEEEECSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999998866544

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=99.91  E-value=2.2e-23  Score=132.96  Aligned_cols=102  Identities=28%  Similarity=0.551  Sum_probs=88.6

Q ss_pred             cCCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEE
Q 032301           24 WSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETM  103 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~  103 (143)
                      ...++++|||.|+++..+.|++|||||.++.|+||+++.   +..|.+.|+|.+|..+...+ ..+++++|.|.++++++
T Consensus        15 ~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~---~~~~~g~i~L~~~~~v~~~~-~~~~~~~F~i~~~~r~~   90 (126)
T 1fao_A           15 PSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQM---SPEPIRILDLTECSAVQFDY-SQERVNCFCLVFPFRTF   90 (126)
T ss_dssp             CCTTCEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTT---CSSCSEEEEGGGCCEEEEEC-SSSSSSEEEEEETTEEE
T ss_pred             CCCccEEEEEEEcCCCCCCcccEEEEEECCEEEEeCCCC---CCCceeEEEccceEEEEecc-cCCCCCEEEEEeCCcEE
Confidence            346899999999988788999999999999999999887   56799999999987665533 24678999999999999


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHHhhCC
Q 032301          104 YFIADSEKEKEDWINSIGRSIVQHSR  129 (143)
Q Consensus       104 ~~~a~s~~e~~~W~~al~~~~~~~~~  129 (143)
                      +|+|+|.+|+.+|+.+|+.++.....
T Consensus        91 ~l~a~s~~e~~~Wi~al~~~i~~~~~  116 (126)
T 1fao_A           91 YLCAKTGVEADEWIKILRWKLSQIRK  116 (126)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHHTC--
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999987443

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.91  E-value=4.5e-23  Score=129.80  Aligned_cols=101  Identities=28%  Similarity=0.638  Sum_probs=86.9

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcc-cCCCcceEEEEe-----
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAED-VLNKQYAFELST-----   98 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~-~~~~~~~f~i~~-----   98 (143)
                      ..++++|||.|++...+.|++|||||.++.|+||+++.   ...|.+.|+|.++.++...+. ...++++|.|.+     
T Consensus         6 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~---~~~~~g~i~L~~~~v~~~~~~~~~~~~~~f~i~~~~~~~   82 (118)
T 1v89_A            6 SGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEE---DTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQ   82 (118)
T ss_dssp             SCEEEEEEEEEECSSSSCEEEEEEEEETTEEEEESSSS---CCSCSEEECSTTEEEEEECCCSSCCCCCEEEEEESCCSS
T ss_pred             CCCcEEEEEEecCCCCCCccEEEEEEECCEEEEEeCCC---CCCceEEEECCCCEEEEcCcCcccCCcceEEEECCcccc
Confidence            45789999999988888999999999999999999987   567999999999876544322 235689999998     


Q ss_pred             ---CCeEEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301           99 ---RTETMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus        99 ---~~~~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                         +.++++|+|+|.+|+.+|+.+|+.++....
T Consensus        83 ~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~~~  115 (118)
T 1v89_A           83 NRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGP  115 (118)
T ss_dssp             CCSSCCCEEEECSSHHHHHHHHHHHHHHHHCCS
T ss_pred             ccCCCcEEEEECCCHHHHHHHHHHHHHHHccCC
Confidence               668999999999999999999999998554

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.91  E-value=2.3e-23  Score=130.35  Aligned_cols=100  Identities=18%  Similarity=0.300  Sum_probs=83.6

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECC---eEEEEecCCCCCCCCcceEEeCCceEEeecCc-ccCCCcceEEEEeCC
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQG---KLFWFKESTVTRASKPRGVIPVASCLTVKGAE-DVLNKQYAFELSTRT  100 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~---~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~-~~~~~~~~f~i~~~~  100 (143)
                      .+.+++|||++++. .+.|++|||||.++   .|+||++++   +..|.+.|+|.+|++....+ +...++++|+|.++.
T Consensus         6 ~~~~~~G~L~k~~~-~~~WkkrWfVL~~~~~~~Ly~Yk~~~---d~~p~g~I~L~g~~V~~~~~~~~~~~~~~Fki~~~~   81 (112)
T 2coc_A            6 SGSLLCGPLRLSES-GETWSEVWAAIPMSDPQVLHLQGGSQ---DGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAK   81 (112)
T ss_dssp             SSSSSEEEEEEESS-SSCEEEEEEECCTTCTTCEEEECCTT---CSSSCSEECGGGCEEECCCSSSCCSSSEEEEEEETT
T ss_pred             CCceEEEEEEecCC-CCCceEEEEEEECCCccEEEEECCCC---ccCcceEEEcCCCEEEecCcccccCCCCEEEEecCC
Confidence            45688899999865 78999999999985   689999987   56799999999996653222 223578999999999


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301          101 ETMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus       101 ~~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                      ++|+|+|+|++++++|+.+|+.|+....
T Consensus        82 ~~y~f~A~s~e~~~~Wl~al~~A~~~~~  109 (112)
T 2coc_A           82 QSWYLSASSAELQQQWLETLSTAAHSGP  109 (112)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHSCCS
T ss_pred             eEEEEEcCCHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999887543

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.91  E-value=7.5e-23  Score=128.60  Aligned_cols=97  Identities=25%  Similarity=0.502  Sum_probs=85.5

Q ss_pred             cCCCceEEEEEEeCC-CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeE
Q 032301           24 WSNPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTET  102 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~  102 (143)
                      ...++++|||.|++. ..+.|++|||||.++.|.||+++.   ...+.+.|+|..+..+...+     +++|.|.+++++
T Consensus         5 ~~~~~~~G~L~K~~~~~~~~WkkR~fvL~~~~L~yy~~~~---~~~~~g~i~l~~~~~v~~~~-----~~~F~i~~~~r~   76 (115)
T 2cod_A            5 SSGKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEK---EMYSKGIIPLSAISTVRVQG-----DNKFEVVTTQRT   76 (115)
T ss_dssp             CSCCCEEEEEEECCSSSSSCCEEEEEEECSSEEEEEESSC---CSSCCCEEETTTEEEEEEET-----TTEEEEEESSCC
T ss_pred             CCCccEEEEEEEcCCCCCCCCceEEEEEECCEEEEEcCCC---CcccCCEEECCcceEEEeCC-----CCEEEEEeCCcE
Confidence            346899999999987 678999999999999999999987   45699999999987666433     689999999999


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301          103 MYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus       103 ~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                      ++|+|+|.+|+.+|+.+|+.++....
T Consensus        77 ~~l~a~s~~e~~~Wi~~l~~~~~~~~  102 (115)
T 2cod_A           77 FVFRVEKEEERNDWISILLNALKSQS  102 (115)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCc
Confidence            99999999999999999999996544

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.91  E-value=2.2e-23  Score=131.17  Aligned_cols=101  Identities=24%  Similarity=0.512  Sum_probs=86.3

Q ss_pred             cCCCceEEEEEEeCCCCCCceeEEEEEE--CCeEEEEecCCCCCCCCcceEEeCCceEEeecCc------ccCCCcceEE
Q 032301           24 WSNPERSGWLTKQGEYIKTWRRRWFVLK--QGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE------DVLNKQYAFE   95 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~--~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~------~~~~~~~~f~   95 (143)
                      ...++++|||.|++...+.|++|||||.  ++.|+||+++.   ...|.+.|+|..+..+....      ....+.++|.
T Consensus         5 ~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~---~~~~~g~i~L~~~~~v~~~~~~~~~~~~~~~~~~F~   81 (117)
T 1v5u_A            5 SSGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRM---DTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFD   81 (117)
T ss_dssp             CCSSSEEEEEEECCCSSSCCEEEEEEEETTTTEEEEESSSS---CSSCCCEEEGGGEEEEECCCCCTTSCSSSCTTTCEE
T ss_pred             cCCccEEEEEEecCCCCCCceeeEEEEECCCCEEEEeecCC---CCccceEEEccCcEEEeecCccccccccCCCCeEEE
Confidence            3467999999999887899999999999  88999999887   56699999999987776432      1234568999


Q ss_pred             EEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301           96 LSTRTETMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus        96 i~~~~~~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      |.++.++++|+|+|.+|+.+|+.+|+.++...
T Consensus        82 i~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~  113 (117)
T 1v5u_A           82 VKTTRRVYNFCAQDVPSAQQWVDRIQSCLSSG  113 (117)
T ss_dssp             EEESSCEEEEECSSHHHHHHHHHHHHTTCCCC
T ss_pred             EECCCceEEEECCCHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999998877644

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=99.90  E-value=4.4e-23  Score=125.32  Aligned_cols=92  Identities=28%  Similarity=0.533  Sum_probs=79.9

Q ss_pred             CceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEEEE
Q 032301           27 PERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFI  106 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~  106 (143)
                      +.++|||.|+++..+.|++|||||.++.|.||+++... ...|.+.++|.++..+..    ...+++|.|.+++++++|+
T Consensus         1 V~k~G~L~K~g~~~k~WkkR~FvL~~~~L~Yy~~~~~~-~~~~~~~i~l~~~~~~~~----~~~~~~F~i~~~~r~~~l~   75 (94)
T 2rsg_A            1 VERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDET-EYGCRGSICLSKAVITPH----DFDECRFDISVNDSVWYLR   75 (94)
T ss_dssp             CCEEEEEEEESSSTTCEEEEEEEEETTEEEEESSTTGG-GTCCSEEEETTTCEEEEC----SSCSSEEEEEETTEEEEEE
T ss_pred             CCEEEEEEEeCCCCCCceEEEEEEECCEEEEEEecccc-cccceeeEecceeeeecC----cccceeEEEEeCCeEEEEE
Confidence            47899999999888999999999999999999887643 345889999999765533    2457899999999999999


Q ss_pred             cCCHHHHHHHHHHHHHH
Q 032301          107 ADSEKEKEDWINSIGRS  123 (143)
Q Consensus       107 a~s~~e~~~W~~al~~~  123 (143)
                      |+|++|+.+|+.||+.|
T Consensus        76 A~s~~e~~~Wi~aLq~A   92 (94)
T 2rsg_A           76 AQDPDHRQQWIDAIEQH   92 (94)
T ss_dssp             CCSSCCTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999999876

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=99.90  E-value=2.5e-22  Score=127.98  Aligned_cols=99  Identities=38%  Similarity=0.730  Sum_probs=85.3

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC----
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT----  100 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~----  100 (143)
                      ..++++|||.|+++..+.|++|||||.++.|+||+++.   +..|.+.|+|.++.++...+  ..++++|.|.+++    
T Consensus         3 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~---~~~~~g~i~L~~~~v~~~~~--~~~~~~f~i~~~~~~~~   77 (127)
T 1fgy_A            3 FNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLENLSIREVLD--PRKPNCFELYNPSHKGQ   77 (127)
T ss_dssp             SSCSEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTT---CSSCSEEEECTTCEEEEECC--SSCSSEEEEECSSSTTC
T ss_pred             CCCceEeEEEEECCCCCCeEEEEEEEECCEEEEeCCCC---CCCcceEEECCceEEEEccC--CCCCceEEEecCCcccc
Confidence            46799999999988889999999999999999999886   56799999999986554332  3678999998764    


Q ss_pred             ------------------eEEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301          101 ------------------ETMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus       101 ------------------~~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                                        ++++|+|+|.+|+.+|+.+|+.++...+
T Consensus        78 ~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~  123 (127)
T 1fgy_A           78 VIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDP  123 (127)
T ss_dssp             CCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHHCT
T ss_pred             ccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhccCC
Confidence                              6899999999999999999999998554

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=99.90  E-value=1.4e-22  Score=135.03  Aligned_cols=113  Identities=18%  Similarity=0.318  Sum_probs=89.6

Q ss_pred             CCCceEEEEEEeCCC-----CCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcc-----cCCCcceE
Q 032301           25 SNPERSGWLTKQGEY-----IKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAED-----VLNKQYAF   94 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~-----~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~-----~~~~~~~f   94 (143)
                      .+++++|||.|++..     .+.|++|||||+++.|.||+++..  ...+.+.|+|..+..++....     .....++|
T Consensus        13 ~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~~--~~~~~G~I~L~~~~~v~~~~~~~~~~~~~~~~~f   90 (164)
T 2lul_A           13 FNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAE--KKYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPF   90 (164)
T ss_dssp             SSEEEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCSS--SCCCCCEEEGGGCCEEEECCCCSSSCCSSSCSEE
T ss_pred             CCeeEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccCc--ccccccEEEEeeeEEEEeccccccCcccccceeE
Confidence            478999999999753     246999999999999999998753  345789999998766654332     13457899


Q ss_pred             EEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCCccccc
Q 032301           95 ELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSEIVDY  139 (143)
Q Consensus        95 ~i~~~~~~~~~~a~s~~e~~~W~~al~~~~~~~~~~~~~~~~~~~  139 (143)
                      .|.++++++||+|+|++|+++|+.||+.++..+...........+
T Consensus        91 ~i~t~~rt~~l~A~s~~e~~~Wi~aL~~~i~~n~~~~~~yHpg~~  135 (164)
T 2lul_A           91 QVVHDANTLYIFAPSPQSRDLWVKKLKEEIKNNNNIMIKYHPKFW  135 (164)
T ss_dssp             EEECSSCEEEEECSSHHHHHHHHHHHHHHHTTCSCCCSEECCSCC
T ss_pred             EEecCCcEEEEECCCHHHHHHHHHHHHHHHHHChhhhhhcCCCcc
Confidence            999999999999999999999999999999876655443344333

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=99.90  E-value=1.2e-22  Score=128.53  Aligned_cols=98  Identities=18%  Similarity=0.377  Sum_probs=82.0

Q ss_pred             CceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccC-------CCcceEEEEeC
Q 032301           27 PERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL-------NKQYAFELSTR   99 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~-------~~~~~f~i~~~   99 (143)
                      ++++|||+|++...+.|++|||||+++.|+||+++....+..|.++|.|.+|++....++..       .+.+.|.|...
T Consensus         6 ~~k~G~L~Kk~~~~k~W~~rwfVL~~~~L~yyK~~~~~~d~~P~gsI~L~~c~v~~~~~~~~~~~~~~~~~~~~F~i~~~   85 (120)
T 4a6h_A            6 EIKSGFLERRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTEHSRKNSTSSPNSTGSDAKFVLHAK   85 (120)
T ss_dssp             CSEEEEEEEEETTTTEEEEEEEEECSSEEEEESSCCTTTCCSCSEEEEGGGEEEEEECCCCC---------CCEEEEEES
T ss_pred             ccEEEEEEEcCCCCCCCccEEEEEeCCEEEEEcCCCcCcCCCceEEEECCCCEEEEcccccccccccccCCCcEEEEEeC
Confidence            79999999999888999999999999999999988654456799999999997765443221       16788999876


Q ss_pred             C-------eEEEEEcCCHHHHHHHHHHHHHHH
Q 032301          100 T-------ETMYFIADSEKEKEDWINSIGRSI  124 (143)
Q Consensus       100 ~-------~~~~~~a~s~~e~~~W~~al~~~~  124 (143)
                      +       +.|+|+|+|.+|+++|+.+|+.++
T Consensus        86 ~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~  117 (120)
T 4a6h_A           86 QNGIIRRGHNWVFKADSYESMMSWFDNLKILT  117 (120)
T ss_dssp             SSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             CCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence            5       589999999999999999999875

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=99.90  E-value=3.9e-23  Score=138.26  Aligned_cols=105  Identities=18%  Similarity=0.313  Sum_probs=83.4

Q ss_pred             CCceEEEEEEeCCC-----CCCceeEEEEEECCeEEEEecCCC-CCCCCcceEEeCCceEEeecC---ccc-CCCc----
Q 032301           26 NPERSGWLTKQGEY-----IKTWRRRWFVLKQGKLFWFKESTV-TRASKPRGVIPVASCLTVKGA---EDV-LNKQ----   91 (143)
Q Consensus        26 ~~~~~G~L~k~~~~-----~~~w~~r~~vL~~~~l~~~~~~~~-~~~~~~~~~i~l~~~~~v~~~---~~~-~~~~----   91 (143)
                      +++++|||.|++..     .+.|++|||||+++.|.||+++.. .....+.+.|+|.++..++..   ++. ..+.    
T Consensus         2 ~vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~~~~~~   81 (169)
T 1btk_A            2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRR   81 (169)
T ss_dssp             CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---
T ss_pred             ceEEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecCCccCCCCceeeEEECcceEEEEeccCCCCcchhcccccc
Confidence            57899999998632     368999999999999999998311 014569999999998766544   211 1112    


Q ss_pred             -----------------ceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhhCCC
Q 032301           92 -----------------YAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRS  130 (143)
Q Consensus        92 -----------------~~f~i~~~~~~~~~~a~s~~e~~~W~~al~~~~~~~~~~  130 (143)
                                       ++|+|.++++++||+|+|++|+++|+.||+.++......
T Consensus        82 ~~~~~~~~~~~i~~~~~~~F~I~t~~rt~yl~A~s~~E~~eWi~aI~~~i~~n~~~  137 (169)
T 1btk_A           82 GEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVIRYNSDL  137 (169)
T ss_dssp             ------CCTTHHHHCCCEEEEEEETTCCEEEEESCHHHHHHHHHHHHHHHTTCSCC
T ss_pred             cCcccccccccccccccccEEEEeCCceEEEEcCCHHHHHHHHHHHHHHHHHCcch
Confidence                             899999999999999999999999999999999865543

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=99.90  E-value=2.6e-22  Score=124.74  Aligned_cols=98  Identities=26%  Similarity=0.479  Sum_probs=81.6

Q ss_pred             cCCCceEEEEEEeCCCCCCceeEEEEEECC--eEEEEecCCCCCCCCcceEEeCCceEEeecCcc----cCCCcceEEEE
Q 032301           24 WSNPERSGWLTKQGEYIKTWRRRWFVLKQG--KLFWFKESTVTRASKPRGVIPVASCLTVKGAED----VLNKQYAFELS   97 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~--~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~----~~~~~~~f~i~   97 (143)
                      ...++++|||.|++...+.|++|||||.++  .|.||+++.   ...|.+.|+|.+|.+......    ...++++|.|.
T Consensus         4 ~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yyk~~~---~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~   80 (109)
T 2i5f_A            4 TGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAG---AEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEII   80 (109)
T ss_dssp             CCCEEEEEEEEEECTTTCCEEEEEEEEETTTTEEEEECTTS---CSSCSEEEECTTCEEEEECC--------CCSEEEEE
T ss_pred             cCceeEEEEEEEcCCCCCCceEEEEEEeCCCcEEEEECCCC---CCCccEEEECCCCEEEEccCCcccccCCCceEEEEE
Confidence            356899999999988888999999999986  999999886   567999999999765443221    12368999999


Q ss_pred             eCC-eEEEEEcCCHHHHHHHHHHHHHHH
Q 032301           98 TRT-ETMYFIADSEKEKEDWINSIGRSI  124 (143)
Q Consensus        98 ~~~-~~~~~~a~s~~e~~~W~~al~~~~  124 (143)
                      +++ ++++|+|+|.+|+.+|+.||+.++
T Consensus        81 ~~~~~~~~l~a~s~~e~~~Wi~ai~~~~  108 (109)
T 2i5f_A           81 TADEVHYFLQAATPKERTEWIKAIQMAS  108 (109)
T ss_dssp             CTTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             eCCCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence            987 669999999999999999999886

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=99.90  E-value=3e-22  Score=128.18  Aligned_cols=104  Identities=26%  Similarity=0.481  Sum_probs=86.4

Q ss_pred             cccCCCceEEEEEEeCCCCCCceeEEEEEECC--eEEEEecCCCCCCCCcceEEeCCceEEeecCcc----cCCCcceEE
Q 032301           22 EFWSNPERSGWLTKQGEYIKTWRRRWFVLKQG--KLFWFKESTVTRASKPRGVIPVASCLTVKGAED----VLNKQYAFE   95 (143)
Q Consensus        22 ~~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~--~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~----~~~~~~~f~   95 (143)
                      +....++++|||.|++...+.|++|||||.++  .|+||+++.   ...|.+.|+|.+|.++.....    ...++++|.
T Consensus        13 ~~~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~---~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~   89 (129)
T 1x05_A           13 EFRGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAG---AEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFE   89 (129)
T ss_dssp             TTCSEEEEEEEEEECCSSCCCCEEEEEEEEETTTEEEEECSSC---CSSCSEEEECTTCEEEECCCCCCSSSCSSCSEEE
T ss_pred             cccCCceEEEEEEecCCCCCCCeeEEEEEeCCCCEEEEECCCC---CCcceeEEEccCCEEEEccCCccccccCCCeEEE
Confidence            34567899999999988788999999999976  899999876   567999999999866543322    123689999


Q ss_pred             EEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301           96 LSTRT-ETMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus        96 i~~~~-~~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                      |.+++ ++|+|+|+|.+|+.+|+.||+.++....
T Consensus        90 i~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~~~  123 (129)
T 1x05_A           90 IITADEVHYFLQAATPKERTEWIKAIQMASRTGK  123 (129)
T ss_dssp             EECTTCCCCEEECSSHHHHHHHHHHHHHHHTCCS
T ss_pred             EEcCCCCEEEEECCCHHHHHHHHHHHHHHHHccC
Confidence            99986 6699999999999999999999987543

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=99.89  E-value=6.5e-22  Score=126.31  Aligned_cols=101  Identities=31%  Similarity=0.573  Sum_probs=85.6

Q ss_pred             cCCCceEEEEEEeCC-CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCc-ccCCCcceEEEEeCC-
Q 032301           24 WSNPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE-DVLNKQYAFELSTRT-  100 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~-~~~~~~~~f~i~~~~-  100 (143)
                      ...++++|||.|++. ..+.|++|||||.++.|+||+++.   ...+.+.|+|.++.+..... +...++++|.|.+++ 
T Consensus        18 ~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~---~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~   94 (128)
T 2dkp_A           18 NAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEK---EEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNM   94 (128)
T ss_dssp             TSCCCEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTT---CCSEEEEECGGGSEEEECCGGGCCSSCSEEEEECSSS
T ss_pred             CCCcEEEEEEEEeCCCCCCCceeEEEEEeCCEEEEECCCC---CcccceEEEcCceEEEEcCCcccCCCCeEEEEEcCCC
Confidence            346789999999987 678999999999999999999887   56799999999876544332 223678999999986 


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301          101 ETMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus       101 ~~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      ++++|+|+|++|+.+|+.+|+.++...
T Consensus        95 r~~~l~a~s~~e~~~Wi~al~~a~~~~  121 (128)
T 2dkp_A           95 RTYYFCTDTGKEMELWMKAMLDAALVQ  121 (128)
T ss_dssp             CCEEEECSSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999988743

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.89  E-value=2e-22  Score=128.78  Aligned_cols=102  Identities=16%  Similarity=0.364  Sum_probs=81.2

Q ss_pred             CCCceEEEEEEeC-CCCCCceeEEEEEE---CCeEEEEecCCC-CCCCCcceEEeCCceEEeecCc--ccCCCcceEEEE
Q 032301           25 SNPERSGWLTKQG-EYIKTWRRRWFVLK---QGKLFWFKESTV-TRASKPRGVIPVASCLTVKGAE--DVLNKQYAFELS   97 (143)
Q Consensus        25 ~~~~~~G~L~k~~-~~~~~w~~r~~vL~---~~~l~~~~~~~~-~~~~~~~~~i~l~~~~~v~~~~--~~~~~~~~f~i~   97 (143)
                      ....++|||.|++ ...+.|++|||||.   +..|+||+++.. .....|.+.|+|..+..|....  .....+++|.|.
T Consensus        13 ~~~~~~G~L~K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~~~~~~~G~I~L~~~~~V~~~~~~~~~~~~~~F~i~   92 (126)
T 1v5p_A           13 RQNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVIN   92 (126)
T ss_dssp             CCCCEECCEEEECTTCSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCSSEEEEE
T ss_pred             CCCceEEEEEEeCCCCCCCccceEEEEecCCCCEEEEECCCCCCCCCceeeEEEECCCccEEecCCcccCCCCCEEEEEE
Confidence            3467899999997 56799999999999   556667687421 1256799999999866665432  223557999999


Q ss_pred             eCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           98 TRTETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        98 ~~~~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      ++.++|+|+|+|++|+++||.||+.++..
T Consensus        93 t~~r~y~l~A~s~~e~~~Wi~al~~a~~~  121 (126)
T 1v5p_A           93 ALSQRYFLQANDQKDLKDWVEALNQASKS  121 (126)
T ss_dssp             CSSCEEEEECSSHHHHHHHHHHHHHTTTT
T ss_pred             CCCEEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999988764

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.89  E-value=4.6e-22  Score=127.72  Aligned_cols=104  Identities=18%  Similarity=0.389  Sum_probs=82.1

Q ss_pred             ccCCCceEEEEEEeCCCCCCceeEEEEE-ECCeEEEEecCCCCCCCCcceEEeCCc-eEEee--------cCcccCCCcc
Q 032301           23 FWSNPERSGWLTKQGEYIKTWRRRWFVL-KQGKLFWFKESTVTRASKPRGVIPVAS-CLTVK--------GAEDVLNKQY   92 (143)
Q Consensus        23 ~~~~~~~~G~L~k~~~~~~~w~~r~~vL-~~~~l~~~~~~~~~~~~~~~~~i~l~~-~~~v~--------~~~~~~~~~~   92 (143)
                      ....++++|||.|++...+.|++||||| .++.|.||+++.   ...+.+.|.+.. +..+.        ..++...+++
T Consensus         4 ~~~~v~~~G~L~K~g~~~k~WkkRwFVL~~~~~L~Yyk~~~---~~~~~g~i~l~~~~~~i~~~~~~~~v~~~~~~~~~~   80 (130)
T 2d9v_A            4 GSSGLVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDET---AQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDG   80 (130)
T ss_dssp             SCCCEEEEEEEEEECSSSCCEEEEEEEEETTTEEEEESSSS---TTSEEEEEECTTTEEEEEEGGGCSSCCCCSSCCTTT
T ss_pred             CCCceeEEEEEEeecCccCCceeeEEEEccCCEEEEEeCCC---CCCcCceEecccceeEEeccccccccCCCCCCCcCc
Confidence            3456789999999988889999999999 799999999986   445778887763 32221        1112345679


Q ss_pred             eEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHhhCC
Q 032301           93 AFELSTRT-ETMYFIADSEKEKEDWINSIGRSIVQHSR  129 (143)
Q Consensus        93 ~f~i~~~~-~~~~~~a~s~~e~~~W~~al~~~~~~~~~  129 (143)
                      +|.|.+++ ++|+|+|+|++|+++|+.||+.++.....
T Consensus        81 ~F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~~~~~~  118 (130)
T 2d9v_A           81 LLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTPAP  118 (130)
T ss_dssp             EEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHTCCCC
T ss_pred             EEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHHcCCCC
Confidence            99999965 89999999999999999999999875443

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=99.89  E-value=2.1e-22  Score=128.02  Aligned_cols=102  Identities=31%  Similarity=0.615  Sum_probs=88.1

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCc--ccCCCcceEEEEeCCeE
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE--DVLNKQYAFELSTRTET  102 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~--~~~~~~~~f~i~~~~~~  102 (143)
                      ..++++|||.|++...+.|++|||||.++.|+||+++.   ...+.+.|+|.++..+....  +...++++|.|.+++++
T Consensus        12 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~---~~~~~g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~~~r~   88 (125)
T 1eaz_A           12 SAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSEL---EKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRT   88 (125)
T ss_dssp             CCCSEEEEEEEECTTTCCEEEEEEEECSSEEEEESSTT---CSSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECSSCE
T ss_pred             CCccEEEEEEEeCCCCCCcceEEEEEeCCEEEEEcCCC---CCcceeEEEcccceEEeeccccccCCcCCEEEEEeCCcE
Confidence            46899999999988788999999999999999999987   56799999999987665432  22356899999999999


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHHhhCC
Q 032301          103 MYFIADSEKEKEDWINSIGRSIVQHSR  129 (143)
Q Consensus       103 ~~~~a~s~~e~~~W~~al~~~~~~~~~  129 (143)
                      ++|+|+|++|+.+|+.+|+.++.....
T Consensus        89 ~~l~a~s~~e~~~W~~al~~~i~~~~~  115 (125)
T 1eaz_A           89 FYVQADSPEEMHSWIKAVSGAIVAQRG  115 (125)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHHHTC-
T ss_pred             EEEEcCCHHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999986543

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=8.5e-22  Score=123.87  Aligned_cols=103  Identities=30%  Similarity=0.608  Sum_probs=85.3

Q ss_pred             CCCceEEEEEEeC-CCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCc-ccCCCcceEEEEeC-Ce
Q 032301           25 SNPERSGWLTKQG-EYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE-DVLNKQYAFELSTR-TE  101 (143)
Q Consensus        25 ~~~~~~G~L~k~~-~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~-~~~~~~~~f~i~~~-~~  101 (143)
                      ..++++|||.|++ ...+.|++|||||.++.|+||+++.   ...+.+.|+|.++.+....+ +...++++|.|.++ .+
T Consensus         9 ~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~---~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r   85 (117)
T 2d9y_A            9 APVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEK---EESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVR   85 (117)
T ss_dssp             CCCCEEEEEEEECTTSSSCEEEEEEEEETTEEEEESSTT---CCSCCEEEECSSCEEEECCTTTTCCCSSEEEEECSSSC
T ss_pred             CCeeEEEEEEEeCCCCCCCceEEEEEECCCEEEEECCCC---CCCcCCEEEeCCeEEEEcCccccCCCccEEEEEcCCCc
Confidence            4579999999997 4678999999999999999999887   56799999999986543322 33467899999865 58


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHHHhhCCC
Q 032301          102 TMYFIADSEKEKEDWINSIGRSIVQHSRS  130 (143)
Q Consensus       102 ~~~~~a~s~~e~~~W~~al~~~~~~~~~~  130 (143)
                      +++|+|+|.+|+.+|+.+|+.++.....+
T Consensus        86 ~~~l~a~s~~e~~~Wi~al~~~~~~~~~p  114 (117)
T 2d9y_A           86 TYFFSAESPEEQEAWIQAMGEAARVQSGP  114 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHTTCCTTCS
T ss_pred             EEEEEcCCHHHHHHHHHHHHHHHhhccCC
Confidence            99999999999999999999988754433

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=99.89  E-value=2.5e-22  Score=124.47  Aligned_cols=98  Identities=22%  Similarity=0.525  Sum_probs=83.1

Q ss_pred             CCceEEEEEEeCCCC----CCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecC--cccCCCcceEEEEeC
Q 032301           26 NPERSGWLTKQGEYI----KTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA--EDVLNKQYAFELSTR   99 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~----~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~--~~~~~~~~~f~i~~~   99 (143)
                      +++++|||.|+++..    +.|++|||||.++.|.||+++.   ...|.+.|+|.++..+...  .....++++|.|.++
T Consensus         2 ~v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~yy~~~~---~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~i~~~   78 (108)
T 1u5d_A            2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEK---SKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQ   78 (108)
T ss_dssp             CEEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTT---CSSCSEEEECTTCEEEECGGGCSSGGGGGEEEEECS
T ss_pred             CccEEEEEEEcCCCCCccccCceeeEEEEeCCEEEEecCCC---CCCCCEEEEecceEEEeCCccccccCCcceEEEEcC
Confidence            468999999986432    7999999999999999999987   5679999999998754432  122356799999999


Q ss_pred             C-eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301          100 T-ETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus       100 ~-~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      + ++++|+|+|.+|+.+|+.+|+.++..
T Consensus        79 ~~r~~~l~a~s~~e~~~Wi~ai~~~i~~  106 (108)
T 1u5d_A           79 DRRTYEFTATSPAEARDWVDQISFLLKD  106 (108)
T ss_dssp             SSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            8 89999999999999999999999875

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=99.89  E-value=3.4e-22  Score=124.99  Aligned_cols=95  Identities=21%  Similarity=0.405  Sum_probs=80.0

Q ss_pred             CceEEEEEEe-CCCCC-CceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC----
Q 032301           27 PERSGWLTKQ-GEYIK-TWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT----  100 (143)
Q Consensus        27 ~~~~G~L~k~-~~~~~-~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~----  100 (143)
                      ++++|||.++ ++..+ .|++|||||+++.|+||++++   +..+.++|+|.+....+..+....++|+|.|.+++    
T Consensus        12 VirkGWL~k~~~g~~k~~wk~rWFVLt~~~L~yyKd~~---eke~~G~IpL~~~~vr~v~~~~~~rk~~F~l~~~d~r~v   88 (125)
T 1dyn_A           12 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDE---EKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNV   88 (125)
T ss_dssp             EEEEEEEEESCCCGGGTSSEEEEEEEESSEEEEESSTT---CSCEEEEEECTTEEEEECCSCSSSSCEEEEEEETTSSCS
T ss_pred             eEEEEEEEEecCccccCCceeeEEEEeccceeeecCCc---ccccceEEECCCceEeccCCCCCCCceEEEEECCCCccc
Confidence            7999999995 44445 599999999999999999998   67899999999976555444334689999999875    


Q ss_pred             ----eEEEEEcCCHHHHHHHHHHHHHHH
Q 032301          101 ----ETMYFIADSEKEKEDWINSIGRSI  124 (143)
Q Consensus       101 ----~~~~~~a~s~~e~~~W~~al~~~~  124 (143)
                          ++|.|.|+|.+|+.+|+.+|.+|.
T Consensus        89 ~~~h~~y~LsA~t~ee~~~Wi~s~~ra~  116 (125)
T 1dyn_A           89 YKDYRQLELACETQEEVDSWKASFLRAG  116 (125)
T ss_dssp             STTCSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred             cccceEEEEeCCCHHHHHHHHHHHHhCc
Confidence                479999999999999999996664

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=99.89  E-value=4.3e-22  Score=126.93  Aligned_cols=103  Identities=20%  Similarity=0.313  Sum_probs=81.6

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCC------CCCCcceEEeCCceEEeecCcccCCCcceEEEEe
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVT------RASKPRGVIPVASCLTVKGAEDVLNKQYAFELST   98 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~------~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~   98 (143)
                      ..+.++|||.|++...+.|++|||||+++.|+||+++...      -...+.+.|+|.+|.+....++...++++|+|.+
T Consensus        10 ~~~~k~G~L~K~g~~~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~~~~G~I~L~~~~v~~~~~~~~~k~~~F~I~~   89 (124)
T 2w2x_D           10 DEHKQQGELYMWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAPQGKNQKSFVFILEP   89 (124)
T ss_dssp             ---CCEEEEEEEETTTTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCCSCSEEEEGGGEEEEECTTCBTTBSEEEEEEE
T ss_pred             hhcceeEEEEEECCCCCCceEeEEEEECCEEEEEcccccccccccccCCccccEEECCCCEEEEccCCcCCCCEEEEEEC
Confidence            4578999999998878999999999999999999975310      0134589999999976655444456789999998


Q ss_pred             CC---eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301           99 RT---ETMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus        99 ~~---~~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      +.   ++|+|+|+|.+|+.+|+.||+.++..+
T Consensus        90 ~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~~~  121 (124)
T 2w2x_D           90 KQQGDPPVEFATDKVEELFEWFQSIREITWKI  121 (124)
T ss_dssp             CC--CCCEEEEECCCHHHHHHHHHHHHHHC--
T ss_pred             CCCCCceEEEEECCHHHHHHHHHHHHHHHHhh
Confidence            64   579999999999999999999988644

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=99.89  E-value=7e-22  Score=123.84  Aligned_cols=97  Identities=16%  Similarity=0.313  Sum_probs=78.3

Q ss_pred             eEEEEEEeCC----CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEe-ecCcccCCCcceEEEEeC-CeE
Q 032301           29 RSGWLTKQGE----YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTV-KGAEDVLNKQYAFELSTR-TET  102 (143)
Q Consensus        29 ~~G~L~k~~~----~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v-~~~~~~~~~~~~f~i~~~-~~~  102 (143)
                      ++|||.++++    ..+.|+++||||.++.|+||+++.   +..|.+.|+|.++... ....+..+++++|+|.++ .++
T Consensus         2 keG~L~kK~g~~~~~~k~Wk~rwfvL~~~~L~~yk~~~---~~~p~~~i~l~~~~~~~~~~~~~~~r~~~F~l~~~~~~~   78 (112)
T 3cxb_B            2 KEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRT---DVIPLLSVNMGGEQCGGCRRANTTDRPHAFQVILSDRPC   78 (112)
T ss_dssp             EEEEEEECCSCCCSSCCCCEEEEEEEETTEEEEESSSS---CCSCSEEEETTC-CEEEEEECCCSSCTTEEEEEETTSCC
T ss_pred             ceEEEEEeCCCCCCCCCCceEEEEEEECCEEEEECCCC---CCCccceEEecCCEEEeeeccCCCCCCeEEEEEcCCCCE
Confidence            7999997743    458999999999999999999987   5678999999975332 112233578899999976 578


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301          103 MYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus       103 ~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                      |+|+|+|+++|++|+.+|+.++....
T Consensus        79 y~f~A~s~ee~~~Wi~ai~~~~~~~~  104 (112)
T 3cxb_B           79 LELSAESEAEMAEWMQHLCQAVSKGV  104 (112)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHTCC-
T ss_pred             EEEEcCCHHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999987544

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=99.88  E-value=3.7e-22  Score=124.82  Aligned_cols=97  Identities=22%  Similarity=0.461  Sum_probs=79.1

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEE-ECCeEEEEecCCCCCCCCcceEEeCCceE-------Eeec--CcccCCCcceEE
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVL-KQGKLFWFKESTVTRASKPRGVIPVASCL-------TVKG--AEDVLNKQYAFE   95 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL-~~~~l~~~~~~~~~~~~~~~~~i~l~~~~-------~v~~--~~~~~~~~~~f~   95 (143)
                      .++++|||.|++...+.|++||||| .++.|.||+++.   ...+.+.|+|....       .+..  .++...++++|.
T Consensus         4 ~~~~~G~L~K~g~~~k~WkkR~fvL~~~~~L~yyk~~~---~~~~~g~i~l~~~~i~l~~~~~v~~v~~~~~~~~~~~F~   80 (112)
T 3aj4_A            4 AFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQT---RQNIEDKVHMPMDCINIRTGQECRDTQPPDGKSKDCMLQ   80 (112)
T ss_dssp             SCSEEEEEEEECSSSCCEEEEEEEECTTSEEEEESSTT---CCSEEEEEEHHHHEEEEEEGGGCCSCCCSTTCCGGGEEE
T ss_pred             ceeEEEEEEeeCCCCCCeeceEEEEeeCCEEEEEcCCC---CCCCCccccccccceeecccccccccCCCCCCCcCcEEE
Confidence            4789999999988889999999999 889999999987   55688888887533       1221  222223478999


Q ss_pred             EEeC-CeEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301           96 LSTR-TETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus        96 i~~~-~~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                      |.++ .++++|+|+|++|+.+|+.||+.|..
T Consensus        81 i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~  111 (112)
T 3aj4_A           81 IVCRDGKTISLCAESTDDCLAWKFTLQDSRT  111 (112)
T ss_dssp             EEETTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             EEecCCcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence            9976 69999999999999999999998864

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.88  E-value=3.6e-22  Score=126.94  Aligned_cols=105  Identities=21%  Similarity=0.376  Sum_probs=82.8

Q ss_pred             cCCCceEEEEEEeCCC--------CCCceeEEEEEECCeEEEEecCCCCCC-C--CcceEEeCCceEEeecCcccCCCcc
Q 032301           24 WSNPERSGWLTKQGEY--------IKTWRRRWFVLKQGKLFWFKESTVTRA-S--KPRGVIPVASCLTVKGAEDVLNKQY   92 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~--------~~~w~~r~~vL~~~~l~~~~~~~~~~~-~--~~~~~i~l~~~~~v~~~~~~~~~~~   92 (143)
                      ...+.++|||.+++..        .+.|++|||||.++.|+||+++..... .  .+...|+|.++.+. ...+..++++
T Consensus         5 ~~~v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~-~~~~~~~r~~   83 (123)
T 1wjm_A            5 SSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGS-VAFDYRKRKH   83 (123)
T ss_dssp             CCCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEE-ECTTCSSCSS
T ss_pred             CCCeEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEEcccccccCcccCCCceEEccCcEEe-ecccccCCCC
Confidence            4467899999998542        679999999999999999998763211 1  23456888876443 3334457899


Q ss_pred             eEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHhhCC
Q 032301           93 AFELSTRT-ETMYFIADSEKEKEDWINSIGRSIVQHSR  129 (143)
Q Consensus        93 ~f~i~~~~-~~~~~~a~s~~e~~~W~~al~~~~~~~~~  129 (143)
                      +|.|.+++ ++|+|+|+|++|+++|+.||+.++....+
T Consensus        84 ~F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~~~~~~  121 (123)
T 1wjm_A           84 VFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASGPS  121 (123)
T ss_dssp             EEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHCCC
T ss_pred             EEEEEEcCCcEEEEECCCHHHHHHHHHHHHHHHhccCC
Confidence            99999887 89999999999999999999999986544

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.88  E-value=5.3e-22  Score=130.14  Aligned_cols=99  Identities=29%  Similarity=0.581  Sum_probs=84.2

Q ss_pred             cCCCceEEEEEEeCC------CCCCceeEEEEEECC-----eEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcc
Q 032301           24 WSNPERSGWLTKQGE------YIKTWRRRWFVLKQG-----KLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQY   92 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~------~~~~w~~r~~vL~~~-----~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~   92 (143)
                      ...++++|||.|++.      ..+.|++|||||.++     .|.||+++..  ...|.+.|+|.+|..+...+  ..+++
T Consensus        15 ~~~~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~--~~~~~g~I~L~~~~~~~~~~--~~~~~   90 (150)
T 1wg7_A           15 KGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKI--SKEPKGSIFLDSCMGVVQNN--KVRRF   90 (150)
T ss_dssp             SCCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCC--SSCCSEEECTTTCCEECCCC--SSCTT
T ss_pred             CCCeeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCC--CCCcCcEEecccCEEEecCC--CCCce
Confidence            357899999999973      447999999999987     9999998762  34699999999987765432  36789


Q ss_pred             eEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           93 AFELSTRT-ETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        93 ~f~i~~~~-~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      +|.|.+++ ++|+|+|+|.+|+.+|+.+|+.++..
T Consensus        91 ~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~ai~~  125 (150)
T 1wg7_A           91 AFELKMQDKSSYLLAADSEVEMEEWITILNKILQL  125 (150)
T ss_dssp             EEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCcEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence            99999996 89999999999999999999999863

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=99.88  E-value=1.7e-21  Score=123.58  Aligned_cols=99  Identities=25%  Similarity=0.522  Sum_probs=83.7

Q ss_pred             CCceEEEEEEeCC-CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCc-ccCCCcceEEEEeCC-eE
Q 032301           26 NPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE-DVLNKQYAFELSTRT-ET  102 (143)
Q Consensus        26 ~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~-~~~~~~~~f~i~~~~-~~  102 (143)
                      .++++|||.|+++ ..+.|++|||||.++.|+||+++.   ...+.+.|+|.++.+....+ ....++++|.|.+++ ++
T Consensus        10 ~~~~~G~L~K~~~~~~~~WkkR~fvL~~~~L~yy~~~~---~~~~~g~i~l~~~~v~~~~~~~~~~~~~~f~i~~~~~r~   86 (123)
T 1upq_A           10 PVHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSR---EESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRT   86 (123)
T ss_dssp             CEEEEEEEEEECSSSSCCEEEEEEEEETTEEEEESSTT---CCSCCEEEEGGGCEEEECCSSCTTSSSSEEEEECTTSCC
T ss_pred             CceEEEEEEeeCCCCCCCceeEEEEEeCCEEEEECCCC---CcccceEEECCCCEEEECCCCccCCCcEEEEEECCCCeE
Confidence            4789999999974 678999999999999999999887   56799999999986544332 224568999999987 99


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301          103 MYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus       103 ~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      ++|+|+|.+|+.+|+.+|+.++...
T Consensus        87 ~~l~a~s~~e~~~Wi~al~~a~~~~  111 (123)
T 1upq_A           87 YVLAADTLEDLRGWLRALGRASRAE  111 (123)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHC--
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999998754

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.88  E-value=5.3e-22  Score=126.95  Aligned_cols=106  Identities=25%  Similarity=0.470  Sum_probs=84.8

Q ss_pred             CCccccCCCceEEEEEEeCCCCCCceeEEEEEE--CCeEEEEecCCCCCCCCcceEEeCCceEEeecCcc----cCC---
Q 032301           19 DSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLK--QGKLFWFKESTVTRASKPRGVIPVASCLTVKGAED----VLN---   89 (143)
Q Consensus        19 ~~~~~~~~~~~~G~L~k~~~~~~~w~~r~~vL~--~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~----~~~---   89 (143)
                      ...++...++++|||.|++...+.|++|||||.  +..|+||+++..  ...|.+.|+|.+|.+......    ..+   
T Consensus        10 ~~~~~~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~d~~~L~yy~~~~~--~~~~~g~i~L~~~~v~~~~~~~~p~~~~~~~   87 (129)
T 1x1g_A           10 STVELSGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKE--ENRPVGGFSLRGSLVSALEDNGVPTGVKGNV   87 (129)
T ss_dssp             CCCTTCSEEEEEEEEEEECSSSSSEEEEEEEEEESSCEEEEECSSSC--CSSCSCCEESTTCCCEECCSSSSCSSCSSCC
T ss_pred             cccccCCCEEEEEEEEEECCCCCCeeeEEEEEeCCCCeEEEeCCCCc--CCccceEEECcCCEEEEeCCCCCcccccCCC
Confidence            334555678999999999887899999999999  469999998721  567999999998754432221    111   


Q ss_pred             CcceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           90 KQYAFELSTRT-ETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        90 ~~~~f~i~~~~-~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      ++++|.|.+++ ++++|+|+|.+|+.+|+.+|+.++..
T Consensus        88 ~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~  125 (129)
T 1x1g_A           88 QGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTSG  125 (129)
T ss_dssp             CSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHHSSS
T ss_pred             CCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            57999999997 67999999999999999999998753

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=99.88  E-value=1.7e-21  Score=127.52  Aligned_cols=103  Identities=17%  Similarity=0.371  Sum_probs=84.0

Q ss_pred             cCCCceEEEEEEeCCCC----CCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCc--ccCCCcceEEEE
Q 032301           24 WSNPERSGWLTKQGEYI----KTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE--DVLNKQYAFELS   97 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~----~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~--~~~~~~~~f~i~   97 (143)
                      ...++++|||.|++...    +.|++|||||.++.|+||+++.   ...+.+.|+|.++.++....  ...+++++|.|.
T Consensus        14 ~~~~~~~G~L~K~g~~~~~~~k~WkkR~fvL~~~~L~yyk~~~---~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~I~   90 (148)
T 1u5f_A           14 LPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDK---DKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEIC   90 (148)
T ss_dssp             CSSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTT---CSSCSEEEECTTCEEEECTTSCSSTTGGGEEEEE
T ss_pred             CCCccEEEEEEEeCCCCCCcCCCceeEEEEEECCEEEEEcCCC---CcccceEEEcCCcEEEECCCcccCCCCccEEEEE
Confidence            35789999999997533    5999999999999999999987   56799999999986554321  123557999999


Q ss_pred             eCC-eEEEEEcCCHHHHHHHHHHHHHHHHhhCC
Q 032301           98 TRT-ETMYFIADSEKEKEDWINSIGRSIVQHSR  129 (143)
Q Consensus        98 ~~~-~~~~~~a~s~~e~~~W~~al~~~~~~~~~  129 (143)
                      +++ ++++|+|+|.+++.+|+.+|+.++.....
T Consensus        91 ~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~  123 (148)
T 1u5f_A           91 APDKRIYQFTAASPKDAEEWVQQLKFILQDLGS  123 (148)
T ss_dssp             CTTSCEEEEECSSHHHHHHHHHHHHHHCC----
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHHHHHHHhcC
Confidence            987 89999999999999999999999875543

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=99.88  E-value=8.6e-22  Score=126.33  Aligned_cols=101  Identities=21%  Similarity=0.433  Sum_probs=81.5

Q ss_pred             CCceEEEEEEe----CC--CCCCceeEEEEEECCeEEEEecCCCC--------CCCCcceEEeCCceEEeecCcccCCCc
Q 032301           26 NPERSGWLTKQ----GE--YIKTWRRRWFVLKQGKLFWFKESTVT--------RASKPRGVIPVASCLTVKGAEDVLNKQ   91 (143)
Q Consensus        26 ~~~~~G~L~k~----~~--~~~~w~~r~~vL~~~~l~~~~~~~~~--------~~~~~~~~i~l~~~~~v~~~~~~~~~~   91 (143)
                      .+.++|||.++    ++  ..+.|++|||||.++.|+||+++...        ....|.+.|+|.+|++.. ..+..+++
T Consensus        11 ~~~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~~v~~-~~~~~kr~   89 (129)
T 2p0d_A           11 EVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAH-GRHLSSRR   89 (129)
T ss_dssp             SEEEEEEEEEEEEEETTEECCCCCEEEEEEEESSEEEEESCC--------------CCSEEEECTTCEEEE-CTTSCSSS
T ss_pred             ceeEEEEEEEeeeccCCCcCCCCceEEEEEEeCCEEEEEcCcccccccccccccCCCCccEEEeCCcEEEE-CCCCCCCC
Confidence            56899999985    22  23799999999999999999998421        145799999999987554 34445778


Q ss_pred             ceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301           92 YAFELSTRT-ETMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus        92 ~~f~i~~~~-~~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      ++|.|.+++ +.|+|+|+|++|+++|+.||+.++...
T Consensus        90 ~~F~l~t~~~~~yl~qA~s~~e~~~Wi~aI~~~i~~~  126 (129)
T 2p0d_A           90 NVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIERL  126 (129)
T ss_dssp             SEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            999999986 689999999999999999999998764

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=4.4e-21  Score=120.43  Aligned_cols=99  Identities=22%  Similarity=0.397  Sum_probs=81.6

Q ss_pred             CCCceEEEEEEeCCCC-CCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEE
Q 032301           25 SNPERSGWLTKQGEYI-KTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETM  103 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~-~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~  103 (143)
                      ..++++|||.|++... +.|++|||||.++.|.||+++.    ..+.+.+.+..+.+. ..   ..++++|.|.++.++|
T Consensus         8 ~~~~~~G~L~K~~~~~~k~WkkR~fvL~~~~L~yyk~~~----~~~~~~i~l~~~~v~-~~---~~~~~~F~I~~~~r~~   79 (114)
T 2da0_A            8 YGSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATS----NRQPAKLNLLTCQVK-PN---AEDKKSFDLISHNRTY   79 (114)
T ss_dssp             CCSCEEEEEEEECSSSCCCEEEEEEEEETTEEEECCSSC----CSCCEEEETTTSEEE-EC---SSSSSCEEEEETTEEE
T ss_pred             CCccEEEEEEEeCCCCCCCceeEEEEEeCCEEEEEcCCC----CCCCCEEEeeeeEEE-EC---CCCCCEEEEEcCCcEE
Confidence            4578999999998755 8999999999999999999965    235666677666433 22   2457899999999999


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHHhhCCCC
Q 032301          104 YFIADSEKEKEDWINSIGRSIVQHSRSV  131 (143)
Q Consensus       104 ~~~a~s~~e~~~W~~al~~~~~~~~~~~  131 (143)
                      +|+|+|++|+.+|+.||+.++.......
T Consensus        80 ~l~a~s~~e~~~Wi~al~~~~~~~~~~~  107 (114)
T 2da0_A           80 HFQAEDEQDYVAWISVLTNSKEEALTMA  107 (114)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             EEEcCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999998766553

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.88  E-value=4.7e-22  Score=123.52  Aligned_cols=98  Identities=16%  Similarity=0.334  Sum_probs=79.8

Q ss_pred             ccCCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeC-Ce
Q 032301           23 FWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTR-TE  101 (143)
Q Consensus        23 ~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~-~~  101 (143)
                      ....+.++|||.|+  ..+.|++|||||.++.|.||+++..  ...+...|.+.+|.+ ...++ ..++++|.|.++ .+
T Consensus         4 ~~~~~~~~G~L~K~--~~k~Wk~RwfvL~~~~L~yyk~~~~--~~~~~~~i~l~~~~v-~~~~~-~~~~~~F~i~~~~~r   77 (107)
T 2cof_A            4 GSSGLETSSYLNVL--VNSQWKSRWCSVRDNHLHFYQDRNR--SKVAQQPLSLVGCEV-VPDPS-PDHLYSFRILHKGEE   77 (107)
T ss_dssp             CCCCCTTCCEEEEE--ETTEEEEEEEEECSSCEEEECSSTT--CSEEEEEECTTTCEE-ECCCB-TTBSCEEEEEETTEE
T ss_pred             CCCCCcEeEEEEEe--cCCCcceEEEEEECCEEEEEeCCcc--cCCCeeEEeccceEE-EECCC-CCCCeEEEEEeCCCe
Confidence            34568999999999  5689999999999999999998863  334667777888743 33332 467899999998 68


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301          102 TMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus       102 ~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      +|+|+|+|.+|+.+|+.||+.++..
T Consensus        78 ~~~l~A~s~~e~~~Wi~al~~~~~~  102 (107)
T 2cof_A           78 LAKLEAKSSEEMGHWLGLLLSESGS  102 (107)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHSSC
T ss_pred             EEEEEcCCHHHHHHHHHHHHHHHcC
Confidence            8999999999999999999987653

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=4.8e-22  Score=125.88  Aligned_cols=99  Identities=24%  Similarity=0.507  Sum_probs=83.0

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEE--CCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC-e
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLK--QGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT-E  101 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~--~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~-~  101 (143)
                      ..+.++|||.|++...+.|++|||||.  ++.|.||+++... ...|.+.|+|.++.+. ..+   ..+++|.|.+++ +
T Consensus         6 ~~~~~~G~L~K~~~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~-~~~~~g~I~L~~~~v~-~~~---~~~~~F~i~~~~~r   80 (120)
T 2d9x_A            6 SGENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSR-NQKPRGTLQLAGAVIS-PSD---EDSHTFTVNAASGE   80 (120)
T ss_dssp             SCCCCEEEEEEEEETTTEEEEEEEEECTTTCEEEEESSGGGS-SSCCSEEEECTTCCEE-CCS---SSSSCEEECCSSSC
T ss_pred             CCCcEEEEEEecCCCCCCceEEEEEEECCCCEEEEEecCccc-CCCccceEEcceEEEE-ecC---CCCCEEEEEcCCCC
Confidence            457899999999877789999999999  4799999987632 2368999999998533 322   457999999987 9


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301          102 TMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus       102 ~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                      +|+|+|+|.+|+.+|+.+|+.++....
T Consensus        81 ~~~l~a~s~~e~~~Wi~al~~~~~~~~  107 (120)
T 2d9x_A           81 QYKLRATDAKERQHWVSRLQICTQHHT  107 (120)
T ss_dssp             CEEECCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999988554

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=3.1e-21  Score=122.19  Aligned_cols=98  Identities=31%  Similarity=0.634  Sum_probs=82.0

Q ss_pred             CCCceEEEEEEeCC-CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCc-ccCCCcceEEEEeC-Ce
Q 032301           25 SNPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE-DVLNKQYAFELSTR-TE  101 (143)
Q Consensus        25 ~~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~-~~~~~~~~f~i~~~-~~  101 (143)
                      ..++++|||.|+++ ..+.|++|||||.++.|+||+++.   ...|.+.|+|.++.+....+ +...++++|.|.++ .+
T Consensus        20 ~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~---~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r   96 (122)
T 2yry_A           20 APVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEK---EESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVR   96 (122)
T ss_dssp             CCEEEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTT---CCSCCEEEESTTCCCEECCTTCSCSSSSEEEEECSSSC
T ss_pred             CCccEEEEEEEECCCCCCCcEEEEEEEeCCEEEEECCCC---CCCcccEEEcCCCEEEEcCccccCCcccEEEEecCCCc
Confidence            35789999999974 678999999999999999999987   56799999999976332222 23466899999865 58


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHHH
Q 032301          102 TMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus       102 ~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                      +++|+|+|.+|+.+|+.+|+.++.
T Consensus        97 ~~~l~a~s~~e~~~Wi~al~~a~~  120 (122)
T 2yry_A           97 TYFFSAESPEEQEAWIQAMGEAAR  120 (122)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             EEEEEcCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999998874

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=99.88  E-value=1.3e-21  Score=120.59  Aligned_cols=95  Identities=25%  Similarity=0.499  Sum_probs=79.1

Q ss_pred             eEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeC-CeEEEEEc
Q 032301           29 RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTR-TETMYFIA  107 (143)
Q Consensus        29 ~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~-~~~~~~~a  107 (143)
                      ++|||.|+++..+.|++|||||.++.|+||+++... ...+.+.|+|.++.+... +   ..+++|.|.++ .++++|+|
T Consensus         1 ~eG~L~K~g~~~k~Wk~R~fvL~~~~L~Yy~~~~~~-~~~~~g~i~L~~~~v~~~-~---~~~~~F~i~~~~~r~~~l~a   75 (103)
T 3rcp_A            1 MEGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDV-CKGSKGSIKMAVCEIKVH-S---ADNTRMELIIPGEQHFYMKA   75 (103)
T ss_dssp             CEEEEEEECCTTTCEEEEEEEEETTEEEEESSCC----CCCSCEEEGGGCEEECC-T---TCSSEEEEEETTTEEEEEEC
T ss_pred             CceEEEEccCCCCCeeceEEEEECCEEEEEecCCcc-cCCcccEEEeeeeEEEEc-C---CCCceEEEEeCCCCEEEEEC
Confidence            589999999888999999999999999999998732 235899999998755432 2   34789999997 69999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhhC
Q 032301          108 DSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus       108 ~s~~e~~~W~~al~~~~~~~~  128 (143)
                      +|.+|+.+|+.+|+.++....
T Consensus        76 ~s~~e~~~Wi~al~~a~~~~~   96 (103)
T 3rcp_A           76 VNAAERQRWLVALGSSKASLT   96 (103)
T ss_dssp             SSHHHHHHHHHHHHTTSCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHhcc
Confidence            999999999999998876533

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=99.87  E-value=9.1e-22  Score=126.62  Aligned_cols=102  Identities=25%  Similarity=0.505  Sum_probs=82.1

Q ss_pred             CCceEEEEEEe--CCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEE--eecCc-ccCCCcceEEEEe--
Q 032301           26 NPERSGWLTKQ--GEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLT--VKGAE-DVLNKQYAFELST--   98 (143)
Q Consensus        26 ~~~~~G~L~k~--~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~--v~~~~-~~~~~~~~f~i~~--   98 (143)
                      .+.++|||.|+  ++..+.|++|||||.++.|+||+++.......|.+.|+|.+|..  +...+ +...++++|.|.+  
T Consensus         4 ~v~~~G~L~K~~~~~~~~~WkrRwfvL~~~~L~yyk~~~d~~~~~p~g~I~L~~~~~~~v~~~~~~~~~~~~~F~i~~~~   83 (134)
T 2y7b_A            4 SVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPANREFCARRNTFELITVR   83 (134)
T ss_dssp             CCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEESSHHHHTTSCCSEEEEGGGBCSSSCEECCTTTCCCTTEEEEEEEE
T ss_pred             CceEEeeEEEEcCCCCCCCcEEEEEEEECCEEEEECCCCcccccCceEEEEhhhCccccccccchhhccCCCEEEEEecC
Confidence            57899999998  66678999999999999999999654212457999999999863  43332 2246789999987  


Q ss_pred             CC------------------eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301           99 RT------------------ETMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus        99 ~~------------------~~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      +.                  ++|+|+|+|.+|+.+|+.||+.++...
T Consensus        84 p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~~~  130 (134)
T 2y7b_A           84 PQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLVDI  130 (134)
T ss_dssp             ECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence            33                  369999999999999999999998753

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=99.86  E-value=2.5e-22  Score=127.93  Aligned_cols=103  Identities=25%  Similarity=0.487  Sum_probs=81.0

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEEC-CeEEEEecCCCCCCCCcceEEeCCceEEeec--CcccCCCcceEEEEe---
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQ-GKLFWFKESTVTRASKPRGVIPVASCLTVKG--AEDVLNKQYAFELST---   98 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~-~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~--~~~~~~~~~~f~i~~---   98 (143)
                      ..++++|||.|++...+.|++|||||.+ ..|.||+++.   ...+.+.|+|..+..+..  ......++++|.|.+   
T Consensus         6 ~~~~~~G~L~K~g~~~k~WkkRwfvL~~~~~L~yy~~~~---~~~~~g~i~L~~~~~~~~~~~~~~~~~~~~F~I~~~~~   82 (125)
T 1unq_A            6 VAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERP---QDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQW   82 (125)
T ss_dssp             GCEEEEEEEEEECSSSCCEEEEEEEEETTSEEEEESSCC---CSHHHHTSCSEEEECTTCEEEEECSSSTTEEEEEEEET
T ss_pred             CCeeEEeeEEeccCCccCccCcEEEEecCCEEEEEeCCC---CCCCCceeEccceeEEeeeecccccCCCCEEEEEecCC
Confidence            3578999999998888999999999995 5999999886   445677777776543211  111236789999996   


Q ss_pred             -CCeEEEEEcCCHHHHHHHHHHHHHHHHhhCCC
Q 032301           99 -RTETMYFIADSEKEKEDWINSIGRSIVQHSRS  130 (143)
Q Consensus        99 -~~~~~~~~a~s~~e~~~W~~al~~~~~~~~~~  130 (143)
                       ..++++|+|+|.+|+.+|+.||+.++......
T Consensus        83 ~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~~  115 (125)
T 1unq_A           83 TTVIERTFHVETPEEREEWTTAIQTVADGLKKQ  115 (125)
T ss_dssp             TEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceeEEEEeCCHHHHHHHHHHHHHHHhhcccc
Confidence             45789999999999999999999998865443

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A

Probab=99.86  E-value=8e-21  Score=131.14  Aligned_cols=99  Identities=17%  Similarity=0.395  Sum_probs=84.8

Q ss_pred             CCCceEEEEEEeCC----CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCc--ccCCCcceEEEEe
Q 032301           25 SNPERSGWLTKQGE----YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE--DVLNKQYAFELST   98 (143)
Q Consensus        25 ~~~~~~G~L~k~~~----~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~--~~~~~~~~f~i~~   98 (143)
                      ..++++|||.|+++    ..+.|++|||||.++.|+||+++.   ...|.+.|+|.++..+....  ...+++++|.|.+
T Consensus       104 ~~v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~~L~Yyk~~~---~~~p~g~I~L~~~~~v~~~~~~~~~~k~~~F~I~t  180 (211)
T 1u5e_A          104 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDK---DKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICA  180 (211)
T ss_dssp             SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTT---CSSCSEEEECTTCEEEECGGGCSSTTGGGEEEEEC
T ss_pred             CCccEEEEEEEECCCCCcCCCCcEeEEEEEECCEEEEEcCCC---CccceEEEEeCCcEEEEcCCccccCCCCCEEEEEc
Confidence            45889999999975    357999999999999999999987   56799999999987765432  2235679999999


Q ss_pred             CC-eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           99 RT-ETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        99 ~~-~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      ++ ++|+|+|+|.+++.+|+.||+.++..
T Consensus       181 ~~~r~~~l~A~s~~e~~~Wi~aL~~ai~~  209 (211)
T 1u5e_A          181 PDKRIYQFTAASPKDAEEWVQQLKFILQD  209 (211)
T ss_dssp             SSSCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence            86 99999999999999999999999874

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=99.86  E-value=4.9e-21  Score=118.39  Aligned_cols=94  Identities=17%  Similarity=0.374  Sum_probs=75.3

Q ss_pred             eEEEEEEeC--------CCCCCceeEEEEEECCeEEEEecCCCC---CCCCcceEEeCCceEEeecCcccCCCcceEEEE
Q 032301           29 RSGWLTKQG--------EYIKTWRRRWFVLKQGKLFWFKESTVT---RASKPRGVIPVASCLTVKGAEDVLNKQYAFELS   97 (143)
Q Consensus        29 ~~G~L~k~~--------~~~~~w~~r~~vL~~~~l~~~~~~~~~---~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~   97 (143)
                      ++|||.+++        ...+.|++|||||.++.|+||+++...   ....+...|+|.++... ...+..+++++|.|.
T Consensus         1 ~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~-~~~~~~~~~~~F~i~   79 (106)
T 1btn_A            1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICE-VALDYKKKKHVFKLR   79 (106)
T ss_dssp             CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEE-ECSSCCSSSSEEEEE
T ss_pred             CccEEEEEEEEeCCCccCCCCChhEEEEEEECCEEEEEeCCcccccCCCCCCcceEECCCCEEE-EcccccCCccEEEEE
Confidence            589999997        566899999999999999999987621   11236678889886533 233345778999999


Q ss_pred             eCC-eEEEEEcCCHHHHHHHHHHHHHH
Q 032301           98 TRT-ETMYFIADSEKEKEDWINSIGRS  123 (143)
Q Consensus        98 ~~~-~~~~~~a~s~~e~~~W~~al~~~  123 (143)
                      +++ ++|+|+|+|++|+.+|+.||+.|
T Consensus        80 ~~~~~~~~~~A~s~~e~~~Wi~ai~~A  106 (106)
T 1btn_A           80 LSDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             CTTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             ecCCCEEEEECCCHHHHHHHHHHHhcC
Confidence            876 89999999999999999999864

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=99.85  E-value=8.8e-21  Score=126.55  Aligned_cols=98  Identities=22%  Similarity=0.490  Sum_probs=68.8

Q ss_pred             CCceEEEEEE----------eCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCc--eEEeecCcccCCCcce
Q 032301           26 NPERSGWLTK----------QGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVAS--CLTVKGAEDVLNKQYA   93 (143)
Q Consensus        26 ~~~~~G~L~k----------~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~--~~~v~~~~~~~~~~~~   93 (143)
                      +++++|||.+          ++...+.|++|||||.++.|+||+++... ...+.+.|+|..  |.. ....+..+++++
T Consensus         2 dv~~eG~L~~k~~~~~~gkK~g~~~k~WkkRwfvL~~~~L~yyk~~~~~-~~~~~g~i~l~~~~~~~-~~~~~~~~~~~~   79 (168)
T 2j59_M            2 DAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQ-TTPSEEEQPISVNACLI-DISYSETKRKNV   79 (168)
T ss_dssp             -CCEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC---------CEECSSCEE-EECSSSCSCSSE
T ss_pred             CCcEEEEEeeeeecccCCcccCCCCCCceEEEEEEeCCEEEEEECCccc-ccccCCceEecccceEE-EeccccCCCCCE
Confidence            5789999994          44466899999999999999999998521 234677776665  432 222233467899


Q ss_pred             EEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301           94 FELSTRTETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus        94 f~i~~~~~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                      |.|.+++++|+|+|+|++|+.+|+.||+.++.
T Consensus        80 F~I~t~~r~~~l~A~s~~e~~~Wi~ai~~~~~  111 (168)
T 2j59_M           80 FRLTTSDCECLFQAEDRDDMLAWIKTIQESSN  111 (168)
T ss_dssp             EEEECSSCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             EEEEeCCceEEEEcCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998764

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=99.84  E-value=1.7e-19  Score=114.33  Aligned_cols=103  Identities=17%  Similarity=0.350  Sum_probs=80.8

Q ss_pred             ceEEEEEEe-----CCC--CCCceeEEEEEECCeEEEEecCCC------CCCCCcceEEeCCceEEeecCcccCCCcceE
Q 032301           28 ERSGWLTKQ-----GEY--IKTWRRRWFVLKQGKLFWFKESTV------TRASKPRGVIPVASCLTVKGAEDVLNKQYAF   94 (143)
Q Consensus        28 ~~~G~L~k~-----~~~--~~~w~~r~~vL~~~~l~~~~~~~~------~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f   94 (143)
                      .++|+|.++     |+.  .+.|+++||+|+++.|+||+....      ..+..|.+.|+|.++.+ + ..+..+++++|
T Consensus         2 ~~~G~L~rk~llK~G~k~~~ksWkr~W~vL~g~~L~yf~~~~~~~~~~~~~~~~P~~~i~L~g~~V-~-~~e~~~~~~~F   79 (126)
T 2dtc_A            2 TMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMV-Q-LPDDPEHPDIF   79 (126)
T ss_dssp             CEEEEEEEEEEEBTTBCCSSCCCEEEEEEEETTEEEEEEBSSSCCSSGGGBCSSCSEEEECTTCEE-E-CCCCTTSTTEE
T ss_pred             ceeeeeeeeehhhcCCcccccCcccEEEEEeCCEEEEEcccccccccccccccCCCceEEeCCCEE-E-ecCCCCCCCEE
Confidence            578888864     432  478999999999999999996631      11347999999999854 4 33445789999


Q ss_pred             EEEeC--CeEEEEEcCCHHHHHHHHHHHHHHHHhhCCCCC
Q 032301           95 ELSTR--TETMYFIADSEKEKEDWINSIGRSIVQHSRSVT  132 (143)
Q Consensus        95 ~i~~~--~~~~~~~a~s~~e~~~W~~al~~~~~~~~~~~~  132 (143)
                      +|.++  +..|+|+|+|+.++.+|+.||+.++....++.+
T Consensus        80 ~L~~~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~~~~~~~~  119 (126)
T 2dtc_A           80 QLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKSSRPQVP  119 (126)
T ss_dssp             EEECTTSCSEEEEECSSHHHHHHHHHHHHHHHTSCCC---
T ss_pred             EEeeCCCCCEEEEeCCCHHHHHHHHHHHHHHHhcCCCCCC
Confidence            99986  578999999999999999999999986655543

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=99.84  E-value=9.6e-21  Score=120.24  Aligned_cols=101  Identities=14%  Similarity=0.339  Sum_probs=79.3

Q ss_pred             CCCceEEEEEEeCC--------CCCCceeEEEEEECCeEEEEecCCCCCC--C---CcceEEeCCceEEeecCcccCCCc
Q 032301           25 SNPERSGWLTKQGE--------YIKTWRRRWFVLKQGKLFWFKESTVTRA--S---KPRGVIPVASCLTVKGAEDVLNKQ   91 (143)
Q Consensus        25 ~~~~~~G~L~k~~~--------~~~~w~~r~~vL~~~~l~~~~~~~~~~~--~---~~~~~i~l~~~~~v~~~~~~~~~~   91 (143)
                      ..+.++|||.++..        ..+.|+++||||+++.|+||+++.....  .   .+.+.|+|.++. +...++..+++
T Consensus         6 ~~v~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~L~~yk~~~~~~~~~~~~~~~~~~i~L~~~~-v~~~~d~~kr~   84 (122)
T 1dro_A            6 AGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAA-IEIASDYTKKK   84 (122)
T ss_dssp             SSSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCC-CEECCSSSSST
T ss_pred             CceEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEeCCcccccCCCcccCCCceEECCCCE-EEeCCCCCCCC
Confidence            45789999998742        3578999999999999999999873210  1   123678888874 33444455789


Q ss_pred             ceEEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           92 YAFELSTR-TETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        92 ~~f~i~~~-~~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      ++|.|.+. .++|+|+|+|++|+++|+.+|+.++..
T Consensus        85 ~~F~l~t~~~~~~lfqA~s~~e~~~Wi~ai~~~i~~  120 (122)
T 1dro_A           85 HVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDS  120 (122)
T ss_dssp             TEEEEECSSSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred             eEEEEEEcCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            99999974 589999999999999999999998864

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=99.84  E-value=9.9e-20  Score=115.94  Aligned_cols=101  Identities=26%  Similarity=0.451  Sum_probs=78.9

Q ss_pred             CCCceEEEEEEe-----CC--CCCCceeEEEEEECCeEEEEecCCCCCC---------CCcceEEeCCceEEeecCcccC
Q 032301           25 SNPERSGWLTKQ-----GE--YIKTWRRRWFVLKQGKLFWFKESTVTRA---------SKPRGVIPVASCLTVKGAEDVL   88 (143)
Q Consensus        25 ~~~~~~G~L~k~-----~~--~~~~w~~r~~vL~~~~l~~~~~~~~~~~---------~~~~~~i~l~~~~~v~~~~~~~   88 (143)
                      ..+.++|+|.++     +.  ..+.|+++||||+++.|+||+++.....         ..|.+.|+|.+|.+.....+..
T Consensus         6 ~~v~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L~~a~v~~~~~d~~   85 (124)
T 3pp2_A            6 KTLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPKDKS   85 (124)
T ss_dssp             ---CEEEEEEEEEEEETTEECSSCCCEEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEEEEEECTTCEEEECCGGGC
T ss_pred             CcEEEEEEEEEEEeccCCccCCCCCceEEEEEEECCEEEEEecCccccccCccCcccccCCcceEEcCCCEEEecccccC
Confidence            357899999986     21  2358999999999999999998763211         2578999999985443322556


Q ss_pred             CCcceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301           89 NKQYAFELSTRT-ETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus        89 ~~~~~f~i~~~~-~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                      +++++|.|.+++ ..|+|+|+|+++|.+|+.+|+.||.
T Consensus        86 krk~vF~l~t~~~~~ylfqA~s~~e~~~Wi~aI~~aI~  123 (124)
T 3pp2_A           86 SRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQ  123 (124)
T ss_dssp             SSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred             CCceEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence            889999999876 7899999999999999999999885

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=99.83  E-value=1.4e-19  Score=133.22  Aligned_cols=97  Identities=40%  Similarity=0.734  Sum_probs=83.8

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeC-----
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTR-----   99 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~-----   99 (143)
                      ..++++|||.|+++..+.|++|||||.++.|+||+++.   ...|.+.|+|.+|.+... + ...++++|.|.++     
T Consensus       211 ~~~~k~G~L~K~g~~~k~WkkRwFVL~~~~L~Yyk~~~---~~~p~G~I~L~~~~v~~~-~-~~~~~~~F~I~~~~~~~~  285 (347)
T 2r09_A          211 FNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLENLSIREV-E-DPRKPNCFELYNPSHKGQ  285 (347)
T ss_dssp             CCCCEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTT---CSSCSEEEECTTCEEEEE-C-CSSCSSEEEEECSSSTTC
T ss_pred             cccccCCeeEecCCCcccceeEEEEEcCCEEEEEcCCC---ccCCcEEEEcCCeEEEEc-c-CCCCCCEEEEEeCCcccc
Confidence            45799999999988789999999999999999999987   567999999999864433 2 2367899999976     


Q ss_pred             -----------------CeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301          100 -----------------TETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus       100 -----------------~~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                                       .++|+|+|+|.+|+.+|+.+|+.++..
T Consensus       286 ~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~~  329 (347)
T 2r09_A          286 VIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISR  329 (347)
T ss_dssp             CCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHHC
T ss_pred             ccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence                             368999999999999999999999874

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=99.83  E-value=3.7e-20  Score=129.25  Aligned_cols=96  Identities=26%  Similarity=0.616  Sum_probs=84.7

Q ss_pred             CCCceEEEEEEeCCCC-----CCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeC
Q 032301           25 SNPERSGWLTKQGEYI-----KTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTR   99 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~-----~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~   99 (143)
                      .+++++|||.|++...     +.|++|||||.++.|.||+++.   ...+.+.|+|.++..+....   .++++|.|.++
T Consensus        56 ~~~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~---~~~~~g~I~L~~~~~v~~~~---~k~~~F~I~t~  129 (228)
T 3tfm_A           56 QEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDS---EEKLKGTVEVRSAKEIIDNT---NKENGIDIIMA  129 (228)
T ss_dssp             CCSSEEEEEEECGGGCSSSCGGGCEEEEEEECSSEEEEESSTT---CCSEEEEEEGGGCSEEEEET---TTTSEEEEECS
T ss_pred             CCcceEEEEEEECCCcCCcccCCceEEEEEEeCCEEEEEeCCC---CcceeEEEEcCCCEEeccCC---CCCcEEEEEcC
Confidence            4689999999997643     8999999999999999999987   56799999999987665332   56899999999


Q ss_pred             CeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301          100 TETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus       100 ~~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      +++++|+|+|++|+.+|+.+|+.++..
T Consensus       130 ~r~~~l~A~s~~e~~~Wv~aL~~~i~~  156 (228)
T 3tfm_A          130 DRTFHLIAESPEDASQWFSVLSQVHSS  156 (228)
T ss_dssp             SCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999973

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=99.83  E-value=6.8e-20  Score=117.21  Aligned_cols=102  Identities=23%  Similarity=0.386  Sum_probs=70.6

Q ss_pred             CCceEEEEEEeCC--CCCCceeEEEEEEC-CeEEEEecCCC----C----------CCCCcceEEeCCceEEeec----C
Q 032301           26 NPERSGWLTKQGE--YIKTWRRRWFVLKQ-GKLFWFKESTV----T----------RASKPRGVIPVASCLTVKG----A   84 (143)
Q Consensus        26 ~~~~~G~L~k~~~--~~~~w~~r~~vL~~-~~l~~~~~~~~----~----------~~~~~~~~i~l~~~~~v~~----~   84 (143)
                      .++++|||.|+++  ..+.|++|||||.+ +.|+||++...    .          ....|.+.|+|.++.....    .
T Consensus         3 ~~~k~G~L~K~~g~~~~k~WkkRwFvL~~~~~l~Y~~~~~d~~~~~~~~~i~l~~~~~~~~~~~i~l~~~~~~~~~~~~~   82 (128)
T 2rlo_A            3 IPIKQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSASGSA   82 (128)
T ss_dssp             CEEEEEEEEEECSCSTTCCEEEEEEEEETTTEEEEESSHHHHHHTCSCEEEESSSCEEECSSCCCCCSSCCCSCCSCCCC
T ss_pred             cceeEEEEEEecCCCccCCccEEEEEEeCCCEEEEecchhhhccccCCCeeeeeeeEEecCCCccccccccccccccccc
Confidence            3679999999943  56899999999996 56777765210    0          0111333344443322110    0


Q ss_pred             cccCCCcceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301           85 EDVLNKQYAFELSTRT-ETMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus        85 ~~~~~~~~~f~i~~~~-~~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      +....++++|.|.+++ ++|+|+|+|++|+++|+.||+.++...
T Consensus        83 ~~~~~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~~~  126 (128)
T 2rlo_A           83 GQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILAS  126 (128)
T ss_dssp             SSCCCCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence            1112567999999998 899999999999999999999998754

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=99.83  E-value=7.9e-20  Score=129.89  Aligned_cols=103  Identities=21%  Similarity=0.440  Sum_probs=81.8

Q ss_pred             CCCceEEEEE--------EeCCC----CCCceeEEEEEECCeEEEEecCCC---CCCCCcceEEeCCceEEeecCcccCC
Q 032301           25 SNPERSGWLT--------KQGEY----IKTWRRRWFVLKQGKLFWFKESTV---TRASKPRGVIPVASCLTVKGAEDVLN   89 (143)
Q Consensus        25 ~~~~~~G~L~--------k~~~~----~~~w~~r~~vL~~~~l~~~~~~~~---~~~~~~~~~i~l~~~~~v~~~~~~~~   89 (143)
                      ..++++|||.        +.++.    .+.|++|||||.++.|+||+++..   .....|.+.|+|.+|.+.. ..+..+
T Consensus         9 ~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~~L~yyK~~~~~~~~~~~~p~g~I~L~~~~v~~-~~~~~k   87 (263)
T 3a8p_A            9 GVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIVQS-VPEHPK   87 (263)
T ss_dssp             -CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETTEEEEESSCCC------CCCSEEEECTTCEEEE-CTTCSS
T ss_pred             CCeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcCCEEEEEecCcccccccccCccceEEcCCcEEEE-CCcCCC
Confidence            4578999999        33433    679999999999999999998631   1145689999999876554 333346


Q ss_pred             CcceEEEEe-CCeEEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301           90 KQYAFELST-RTETMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus        90 ~~~~f~i~~-~~~~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                      ++++|.|.+ ..++|+|+|+|++|+++|+.||+.++....
T Consensus        88 k~~~F~I~t~~~r~y~f~A~s~ee~~~Wi~aI~~a~~~~~  127 (263)
T 3a8p_A           88 KEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASLF  127 (263)
T ss_dssp             CSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence            799999999 468999999999999999999999987553

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.82  E-value=2.4e-19  Score=133.62  Aligned_cols=100  Identities=19%  Similarity=0.448  Sum_probs=83.5

Q ss_pred             cCCCceEEEEEEeCCCC-CCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEe----ecCcccCC---CcceEE
Q 032301           24 WSNPERSGWLTKQGEYI-KTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTV----KGAEDVLN---KQYAFE   95 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~-~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v----~~~~~~~~---~~~~f~   95 (143)
                      ..+++++|||.|++... +.|++|||||.++.|.||+++.   +..+.+.|.|..+..+    ...+....   .+++|.
T Consensus       266 ~~~~~k~G~L~K~g~~~~k~WKkRwFVL~~~~L~YYk~~~---d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~~F~  342 (386)
T 3lju_X          266 SRNYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPL---DAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGIT  342 (386)
T ss_dssp             SCCCSEEEEEEECCTTSCSCCEEEEEEEETTEEEEESSTT---CSBCSEEEECCCGGGTCEEEESCCTTCCSCCSCEEEE
T ss_pred             ccccceeeeEEEECCCCCCCCcccEEEEECCEEEEEecCC---CcccceEEEeecceeeeeecccCCccccccCCCcEEE
Confidence            35689999999998766 8999999999999999999987   5578999999764332    22222212   269999


Q ss_pred             EEeCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           96 LSTRTETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        96 i~~~~~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      |.++.++|+|+|+|++|+++|+.||+.++..
T Consensus       343 I~t~~rty~l~A~s~~e~~~Wi~aL~~~i~~  373 (386)
T 3lju_X          343 IVTPDRKFLFACETESDQREWVAAFQKAVDR  373 (386)
T ss_dssp             EECSSCEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred             EEeCCeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999985

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=99.82  E-value=6.3e-20  Score=130.43  Aligned_cols=99  Identities=27%  Similarity=0.510  Sum_probs=80.9

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECC-------eEEEEecCCCC-CC-CCcceEEeCCceEEeecCcccCCCcceEE
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQG-------KLFWFKESTVT-RA-SKPRGVIPVASCLTVKGAEDVLNKQYAFE   95 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~-------~l~~~~~~~~~-~~-~~~~~~i~l~~~~~v~~~~~~~~~~~~f~   95 (143)
                      .+++++|||.|+    +.|++|||||.++       .|.||+++... .. ..+.+.|+|..|..+....+ .+++++|.
T Consensus         8 ~~v~k~G~L~K~----K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~p~g~I~L~~~~~V~~~~~-~~~~~~F~   82 (264)
T 1qqg_A            8 SDVRKVGYLRKP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRAD-SKNKHLVA   82 (264)
T ss_dssp             -CEEEEEEEECT----TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECC-SSCSSEEE
T ss_pred             CCccEEEEEEEC----CCCEeEEEEEECCCCCCCCCEEEEECCCccccccccCcceEEEeeceEEEEeccC-CCCCcEEE
Confidence            468999999988    7999999999998       99999987620 01 46999999999876654433 46789999


Q ss_pred             EEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301           96 LSTRTETMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus        96 i~~~~~~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                      |.+++++|+|+|+|++|+.+|+.+|+.++....
T Consensus        83 I~t~~rty~l~A~se~e~~~Wi~aL~~~~~~~k  115 (264)
T 1qqg_A           83 LYTRDEHFAIAADSEAEQDSWYQALLQLHNRAK  115 (264)
T ss_dssp             EEESSCEEEEECSSHHHHHHHHHHHHHHC----
T ss_pred             EEECCEEEEEEeCCHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999887554

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=99.80  E-value=9.3e-19  Score=130.52  Aligned_cols=101  Identities=19%  Similarity=0.389  Sum_probs=79.8

Q ss_pred             CCCceEEEEEEeCCC---CCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC-
Q 032301           25 SNPERSGWLTKQGEY---IKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT-  100 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~---~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~-  100 (143)
                      ..++++|||+|++..   .+.|++|||||.++.|+||++.    ...+.+.|+|..|++... ++ ..++++|.|.+++ 
T Consensus       276 ~~~~k~G~L~K~~~~~~~~~~WkkRwfvL~~~~L~y~k~~----~~~~~~~i~l~~~~v~~~-~~-~~r~~~F~i~t~~~  349 (385)
T 2q13_A          276 NLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARG----DVAGGLAMDIDNCSVMAV-DC-EDRRYCFQITSFDG  349 (385)
T ss_dssp             CCSCCEEEEEEC--------CCEEEEEEEETTEEEEECSS----CSSCEEEEECTTCEEEEE-CC-TTCSSEEEEECTTS
T ss_pred             CCccEEEEEEEecCCCCCcCCceeEEEEEECCEEEEecCC----CcCCCceEEccceEEEec-cc-cCCCceEEEEeCCC
Confidence            357899999998753   2479999999999999999984    345789999999865433 22 3678999999998 


Q ss_pred             -eEEEEEcCCHHHHHHHHHHHHHHHHhhCCCC
Q 032301          101 -ETMYFIADSEKEKEDWINSIGRSIVQHSRSV  131 (143)
Q Consensus       101 -~~~~~~a~s~~e~~~W~~al~~~~~~~~~~~  131 (143)
                       ++|+|+|+|++|+.+|+.||+.++.......
T Consensus       350 ~~~~~l~A~s~~e~~~Wi~ai~~~~~~~~~~~  381 (385)
T 2q13_A          350 KKSSILQAESKKDHEEWICTINNISKQIYLSE  381 (385)
T ss_dssp             CBCCCEECSSHHHHHHHHHHHHHHHTTCC---
T ss_pred             CeEEEEEeCCHHHHHHHHHHHHHHHHhhcccc
Confidence             8999999999999999999999987555443

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=99.78  E-value=9e-19  Score=131.44  Aligned_cols=99  Identities=22%  Similarity=0.422  Sum_probs=79.8

Q ss_pred             CCCceEEEEEEe---CCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC-
Q 032301           25 SNPERSGWLTKQ---GEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT-  100 (143)
Q Consensus        25 ~~~~~~G~L~k~---~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~-  100 (143)
                      ..+.++|||+++   |...+.|++|||||.++.|.||+...    ..+.+.++|..|++.. .+. ..+++||.|.+++ 
T Consensus       299 ~~~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~~----~~~~~~~~l~~~~v~~-~~~-~~r~~cF~i~~~~~  372 (407)
T 4h8s_A          299 NLIQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGA----VAGGLIQDLDNCSVMA-VDC-EDRRYCFQITTPNG  372 (407)
T ss_dssp             SCSCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTTC----SSCCCCBCSSCCEEEE-ECC-TTCSSEEEEECTTS
T ss_pred             CcceeeceeeeeccCCCCCCCceEEEEEEECCEEEEEeCCC----CCCCeEEECCceEEEE-CCC-CCCCceEEEEecCC
Confidence            457899999987   44457899999999999999998764    3467788899986543 332 3678999999986 


Q ss_pred             -eEEEEEcCCHHHHHHHHHHHHHHHHhhCC
Q 032301          101 -ETMYFIADSEKEKEDWINSIGRSIVQHSR  129 (143)
Q Consensus       101 -~~~~~~a~s~~e~~~W~~al~~~~~~~~~  129 (143)
                       ++|+|+|+|++|+.+|+.||+.++.....
T Consensus       373 ~~~~~l~A~s~~e~~~Wi~ai~~a~~~~~~  402 (407)
T 4h8s_A          373 KSGIILQAESRKENEEWICAINNISRQIYL  402 (407)
T ss_dssp             SCCEEEECSSSHHHHHHHHHHHHHHSCC--
T ss_pred             CceEEEEcCCHHHHHHHHHHHHHHHHHhhc
Confidence             68999999999999999999999886543

>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1

Probab=99.77  E-value=8.9e-18  Score=108.58  Aligned_cols=99  Identities=25%  Similarity=0.482  Sum_probs=79.9

Q ss_pred             ceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCC---------CC----------------------CCCCc-------
Q 032301           28 ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKEST---------VT----------------------RASKP-------   69 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~---------~~----------------------~~~~~-------   69 (143)
                      ++.|+|+++++..+.|.++||||+++.|+|++...         ..                      ....+       
T Consensus         2 ~k~G~L~~~~~~~~~w~~~~fvL~~~~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e~~~~~l~E   81 (150)
T 2fjl_A            2 IKNGILYLEDPVNHEWYPHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILEPEREHLDE   81 (150)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEETTEEEECCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSCTTCSSSCT
T ss_pred             CcceEEEeecCCCCCceEeEEEEECCEEEEEeeccccccccCcccccccCCchhhcccchhccccCCccccchhHhcccc
Confidence            68999999998889999999999999999987111         00                      00111       


Q ss_pred             --------ceEEeCCceEEeecCcccCCCcceEEEEeCC---eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           70 --------RGVIPVASCLTVKGAEDVLNKQYAFELSTRT---ETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        70 --------~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~---~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                              .++|+|.+|.+.........++++|.|.++.   ++|+|.|+|.++|.+|+.||++|+..
T Consensus        82 ~~~lG~l~kG~IdL~gc~V~~~~~~~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~~  149 (150)
T 2fjl_A           82 NSPLGDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQT  149 (150)
T ss_dssp             TTTTTTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred             cccccccccceEecCccEEEeccCCCCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence                    7999999997765544445689999999875   58999999999999999999999753

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.77  E-value=1.7e-18  Score=128.98  Aligned_cols=98  Identities=22%  Similarity=0.420  Sum_probs=80.2

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEE--ECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEE----e
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVL--KQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELS----T   98 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL--~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~----~   98 (143)
                      ...+++|||+|+|+..+.|++|||||  .++.|.||+++.   +..|.+.|.|.++..+. .++...++++|.|.    +
T Consensus       144 ~~~~keG~L~KrG~~~k~WkrRwFVL~~~~~~L~Yy~~~~---~~~p~g~I~L~~~~~~~-~~~~~~~~~~f~I~~~~~~  219 (386)
T 3lju_X          144 SAGYREGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRND---AKEPKAVMKIEHLNATF-QPAKIGHPHGLQVTYLKDN  219 (386)
T ss_dssp             HSSEEEEEEEEECSSSCCEEEEEEEEETTTTEEEEEC--------CCSEEEEGGGEEEEE-CHHHHTSTTCEEEEEEETT
T ss_pred             cccccccceeeeccccCCceEEEEEEEcCCCEEEEECCCC---ccCcccEEEeeccEEEE-cccccCCCceEEEEEecCC
Confidence            34679999999999889999999999  899999999987   66799999999975554 33334678999998    5


Q ss_pred             CCeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           99 RTETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        99 ~~~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      +.++|+|+|+|.+++.+|+.+|+.+...
T Consensus       220 ~~R~y~l~A~s~~e~~~Wi~aIr~a~~~  247 (386)
T 3lju_X          220 STRNIFIYHEDGKEIVDWFNALRAARFH  247 (386)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCHHHHHHHHHhhhhcccc
Confidence            6699999999999999999999988543

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=99.76  E-value=4.3e-18  Score=107.14  Aligned_cols=98  Identities=16%  Similarity=0.451  Sum_probs=76.3

Q ss_pred             ceEEEEEE--eCCCCC-CceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcc-------cCCCcceEEEE
Q 032301           28 ERSGWLTK--QGEYIK-TWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAED-------VLNKQYAFELS   97 (143)
Q Consensus        28 ~~~G~L~k--~~~~~~-~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~-------~~~~~~~f~i~   97 (143)
                      .++|||.+  +++..+ .|++|||||++..|+||+.+.......|.+.|+|+.+..|+....       ....++.|+|.
T Consensus         2 ~~eGwl~~pk~~~~~k~~Wkkr~~vL~~~kL~~y~~~~~~~~~~p~~~Idl~~~~~V~~V~~~d~i~~~~~~~p~iF~I~   81 (117)
T 2rov_A            2 RLEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQTDVYRADAKEIPRIFQIL   81 (117)
T ss_dssp             CSEEEEECCCCSSSSCCCCCEEEEEEETTEEEEESCHHHHHTTCCSEEECGGGEEEEEECCTTTCSSSCTTTGGGEEEEE
T ss_pred             ceEEEEEeecCCCccCCCcEEEEEEEECCEEEEEECCCCcccCCceEEEECcccEEEEEcccccccccccccCCcEEEEE
Confidence            46899996  555566 899999999999999999865321236889999988766543321       11236889998


Q ss_pred             eC------CeEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301           98 TR------TETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus        98 ~~------~~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                      ..      .+++||.|+|++|+.+|+.+|+.++.
T Consensus        82 ~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i~  115 (117)
T 2rov_A           82 YANEGISSAKNLLLLANSTEEQQKWVSRLVKKIP  115 (117)
T ss_dssp             ECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred             eCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHhc
Confidence            63      48999999999999999999998764

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=99.76  E-value=1.4e-17  Score=119.63  Aligned_cols=100  Identities=18%  Similarity=0.329  Sum_probs=75.5

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCc----ccCCCcceEEEEeCC-
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE----DVLNKQYAFELSTRT-  100 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~----~~~~~~~~f~i~~~~-  100 (143)
                      .+.++|||++++...+.|++|||||.++.|+||+++...........+.+..+.+.....    ....++++|.|.+++ 
T Consensus       167 ~p~~~G~L~k~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~~~~i~l~~l~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~  246 (291)
T 3tca_A          167 VPELEGALYLKEDGKKSWKRRYFLLRASGIYYVPKGKTKTSRDLACFIQFENVNIYYGIQCKMKYKAPTDHCFVLKHPQI  246 (291)
T ss_dssp             CCCCEEEEEEECTTSSCEEEEEEEECSSEEEECCTTCCSSTTTCEEEEEGGGCEEEEECSHHHHHCCSSSCEEEEECTTC
T ss_pred             CCceEEEEEEeCCCCCCceEEEEEEeCCEEEEEecCccccccCceeeccceeEEEEecCccccccCCCCCeEEEEEcCCC
Confidence            467899999999888999999999999999999988733222233344445543332221    123568999999864 


Q ss_pred             -----eEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301          101 -----ETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus       101 -----~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                           ++++|+|+|++++..|+.||+.|..
T Consensus       247 ~~~~~~~~~l~A~s~~e~~~Wi~air~Ak~  276 (291)
T 3tca_A          247 QKESQYIKYLCCDDARTLSQWVMGIRIAKY  276 (291)
T ss_dssp             CSCCTTSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEECCCHHHHHHHHHHHHHHhc
Confidence                 4699999999999999999998864

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=2.6e-16  Score=98.20  Aligned_cols=102  Identities=26%  Similarity=0.368  Sum_probs=82.7

Q ss_pred             CCCceEEEEEEeC--CCCCCceeEEEEEECC------eEEEEecCCC-CCCCCcceEEeCCceEEeecCccc---CCCcc
Q 032301           25 SNPERSGWLTKQG--EYIKTWRRRWFVLKQG------KLFWFKESTV-TRASKPRGVIPVASCLTVKGAEDV---LNKQY   92 (143)
Q Consensus        25 ~~~~~~G~L~k~~--~~~~~w~~r~~vL~~~------~l~~~~~~~~-~~~~~~~~~i~l~~~~~v~~~~~~---~~~~~   92 (143)
                      .+++++|||+++.  .+.+.|+++||||.+.      .|-+|..++. .....+..+|.|..|..|.+....   .+..+
T Consensus        10 e~~vk~G~L~~q~q~~fgkKWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~~~rrVIrLsdCisV~~~~~e~~~pk~~~   89 (127)
T 2d9w_A           10 DGAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCLRVAEAGGEASSPRDTS   89 (127)
T ss_dssp             CCSSEEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEEECCCSCSSSCSCCEEEECGGGEEEEEECCSCSSSCSSCE
T ss_pred             CccccceEEEecccchhhhhhheeEEEEecCCCCCceeeeeeeccCccccCCCCceEEEhhhCCeEecccCccCCCCcce
Confidence            4689999999986  4667899999999853      6899988762 223468899999999888765432   24569


Q ss_pred             eEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301           93 AFELSTRTETMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus        93 ~f~i~~~~~~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      .|.|.|++++|+|+|++. ++.+|+.+|.......
T Consensus        90 aF~l~T~er~~~laAe~~-E~~~Wi~~ic~~aF~~  123 (127)
T 2d9w_A           90 AFFLETKERLYLLAAPAA-ERGDWVQAICLLAFSG  123 (127)
T ss_dssp             EEEEEESSCEEEEEECHH-HHHHHHHHHHHHHTSS
T ss_pred             EEEEEeCCcEEEEEeCcH-HHHHHHHHHHHHhcCC
Confidence            999999999999999964 8999999999887644

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=2.6e-17  Score=104.62  Aligned_cols=98  Identities=18%  Similarity=0.396  Sum_probs=78.8

Q ss_pred             CceEEEEEEeCC---CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC---
Q 032301           27 PERSGWLTKQGE---YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT---  100 (143)
Q Consensus        27 ~~~~G~L~k~~~---~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~---  100 (143)
                      +.+.+||...+.   ..+.|++|||+|.++.|+||++.... ...|.+.|+|.+|.+... ....+.++.|.+..|.   
T Consensus         9 pel~~~l~~~~pkk~tlK~~KrrWFvlk~~~L~YyK~kee~-~~ePig~I~L~gceV~pd-~~~~~~kf~ikl~iPs~~g   86 (137)
T 2ys3_A            9 PELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEA-PGDPIQQLNLKGCEVVPD-VNVSGQKFCIKLLVPSPEG   86 (137)
T ss_dssp             CCEECCCEECCTTSCCSSSSCCCEEEECSSCEEEESSTTTT-TSCCSCCBCTTTCEEEEC-CBGGGTBEEEEEEEECSSS
T ss_pred             cchhHHHHhhCccccccccceeEEEEEeCCEEEEECCchhc-cCCCceEEECCCCEEecc-ccccCCceEEEEEccCCCC
Confidence            678899987643   45789999999999999999888732 247999999999975443 2224667887777664   


Q ss_pred             -eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301          101 -ETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus       101 -~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                       ++++|.|+|++++.+|+.|++.|...
T Consensus        87 ~r~y~l~cdsEeqy~~WMaA~rlAskg  113 (137)
T 2ys3_A           87 MSEIYLRCQDEQQYARWMAGCRLASKG  113 (137)
T ss_dssp             EEEEEEEESSHHHHHHHHHHHHHHHTS
T ss_pred             ceEEEEECCCHHHHHHHHHHHHHhccC
Confidence             88999999999999999999988754

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=99.68  E-value=1.6e-16  Score=113.13  Aligned_cols=101  Identities=22%  Similarity=0.450  Sum_probs=79.2

Q ss_pred             CCCceEEEEEEe-----CC-------CCCCceeEEEEEECCeEEEEecCCCCC---CCCcceEEeCCceEEeecCcccCC
Q 032301           25 SNPERSGWLTKQ-----GE-------YIKTWRRRWFVLKQGKLFWFKESTVTR---ASKPRGVIPVASCLTVKGAEDVLN   89 (143)
Q Consensus        25 ~~~~~~G~L~k~-----~~-------~~~~w~~r~~vL~~~~l~~~~~~~~~~---~~~~~~~i~l~~~~~v~~~~~~~~   89 (143)
                      ..+.++|||.++     +.       ..+.|+++||||.++.|+||+++....   ...|.+.|.|.++++. ...+..+
T Consensus         9 ~~v~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLkg~~L~fYKde~~~~~~~~~~p~~~I~L~ga~v~-~a~d~~k   87 (279)
T 3a8n_A            9 GTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQ-AVPEHPK   87 (279)
T ss_dssp             -CCSCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEETTEECCBCCC--------CCCSSCCBCCSCEEC-CCTTSSS
T ss_pred             CceeEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEeCCEEEEEecccccccccccCCCceEeccCcEEE-eccccCC
Confidence            567899999764     11       347999999999999999999886321   2357788999998554 3445557


Q ss_pred             CcceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           90 KQYAFELSTRT-ETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        90 ~~~~f~i~~~~-~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      ++++|.|.+++ +.|+|+|+|.+||+.|+.+|+.++..
T Consensus        88 Kk~vF~L~t~~g~~yLFQA~s~eEm~~WI~aI~~a~~~  125 (279)
T 3a8n_A           88 KDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAA  125 (279)
T ss_dssp             SCSCCCEEETTTEEEECCCSCHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence            88999999876 78999999999999999999999873

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*

Probab=99.62  E-value=1.8e-14  Score=93.85  Aligned_cols=100  Identities=13%  Similarity=0.345  Sum_probs=78.8

Q ss_pred             CCceEEEEEEeCC---CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeC---
Q 032301           26 NPERSGWLTKQGE---YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTR---   99 (143)
Q Consensus        26 ~~~~~G~L~k~~~---~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~---   99 (143)
                      -+...+||.....   .++.|+++|||+++..|+||++++.. ...|.+.|.|.||.+..... ....++.+.+..|   
T Consensus        46 iPeL~dyLk~~~pk~~tLKgyKryWFv~kd~~LsyYKskEe~-~geP~~~I~LrGCEVtpDVn-va~~Kf~IkL~vP~~~  123 (173)
T 4f7h_A           46 IPELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEES-SGTPAHQMNLRGCEVTPDVN-ISGQKFNIKLLIPVAE  123 (173)
T ss_dssp             TTCEEEEEEEECCBTTBCCCCEEEEEEEETTEEEEESCGGGC-SSCCSEEEECTTCEEEEEEE-TTTTEEEEEEEEEETT
T ss_pred             ChhhHhHHHhhcchhcccccceeEEEEEeCCEEEEEcCHhHh-cCCCceEEecCceEEecccc-ccccceeEEEeccCCC
Confidence            3568899976532   45899999999999999999999854 36799999999997654322 2355666666554   


Q ss_pred             -CeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301          100 -TETMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus       100 -~~~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                       ...+++.|+++.++.+|+.|++.|....
T Consensus       124 gm~e~~Lrcd~E~qya~WMAAcrLAskGk  152 (173)
T 4f7h_A          124 GMNEIWLRCDNEKQYAHWMAACRLASKGK  152 (173)
T ss_dssp             EEEEEEEEESSHHHHHHHHHHHHHHHTTC
T ss_pred             CcceeeeecCCHHHHHHHHHHhhhhccCC
Confidence             3679999999999999999999888754

>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}

Probab=99.60  E-value=2.9e-14  Score=91.90  Aligned_cols=99  Identities=18%  Similarity=0.404  Sum_probs=76.9

Q ss_pred             CCceEEEEEEeCC---CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeC---
Q 032301           26 NPERSGWLTKQGE---YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTR---   99 (143)
Q Consensus        26 ~~~~~G~L~k~~~---~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~---   99 (143)
                      .+...+||.....   .++.|+++|||+++..|+||++++.. ...|.+.|+|.||.+..... ....++.+.|.-+   
T Consensus        25 iPeL~dyLk~~~pkrltLKgfKryWfv~kDt~LsyYKSkEe~-~geP~~~inLrGCEVtPDVn-va~~Kf~ikL~ip~~~  102 (165)
T 4bbk_A           25 IPKLADYLKLFRPKKLMLKACKQYWFVFKDTSIAYFKNKELE-QGEPIEKLNLRGCEIVPDVN-VSGRKFGIKLLIPVAD  102 (165)
T ss_dssp             -CCEEEEEEEEC-------CCEEEEEEEETTEEEEESSGGGT-TSCCSEEEECTTCEEEEEEE-TTTTEEEEEEEEEETT
T ss_pred             ChhhHhHHHhhcccccccccceeEEEEEeCCEEEEEcCHHHh-cCCCceEEecCccEEecccc-cccceeeEEEecCCCC
Confidence            3568899976532   46899999999999999999999854 46899999999997654322 2356777777654   


Q ss_pred             -CeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301          100 -TETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus       100 -~~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                       ...++|.|+++.+..+|+.|++.|...
T Consensus       103 gm~e~~LrcdsE~QYa~WMAAcrLAskG  130 (165)
T 4bbk_A          103 GMNEVYLRCDHEDQYARWMAACILASKG  130 (165)
T ss_dssp             EEEEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred             cceeeeeecCCHHHHHHHHHHhhhcccc
Confidence             267999999999999999999988774

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=99.57  E-value=6.6e-14  Score=98.65  Aligned_cols=98  Identities=15%  Similarity=0.296  Sum_probs=76.1

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcce---EEeCCceEEeecCcc----cCCCcceEEEEe
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRG---VIPVASCLTVKGAED----VLNKQYAFELST   98 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~---~i~l~~~~~v~~~~~----~~~~~~~f~i~~   98 (143)
                      -+..+|||++++...+.|++|||+|+++.|+|++...   ...+..   .+.|+++.+......    ....+++|.|..
T Consensus       131 ~P~~~G~L~~ke~~~K~WkkRyfvLr~sgLy~~~k~~---sk~~r~l~~~~~L~~~~vy~~~~~kKk~kaPt~~~F~ik~  207 (256)
T 3hk0_A          131 SPEIQGFLHVKELGKKSWKKLYVCLRRSGLYCSTKGT---SAAPRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIKP  207 (256)
T ss_dssp             CEEEEEEEEEECTTSSCEEEEEEEEETTEEEEESSTT---CCCGGGEEEEECCTTEEEEEESSTHHHHCCSSSEEEEEEE
T ss_pred             CCcceeEEEEecCCCCcceEEEEEEeCCEEEEEecCC---CCccccceEEEEcCCCEEEEecccccccCCCCCCEEEEEc
Confidence            3568999999987789999999999999999998776   233433   368888655443321    123479999996


Q ss_pred             CC------eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           99 RT------ETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        99 ~~------~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      +.      ..++|+|+|++++.+|+.||+.|...
T Consensus       208 ~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak~g  241 (256)
T 3hk0_A          208 NKVRNETKELRLLCAEDEQTRTSWMTAFRLLKYG  241 (256)
T ss_dssp             TTCSSCCTTCEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred             ccccCCCceEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence            54      35999999999999999999998764

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=99.57  E-value=4.7e-14  Score=100.53  Aligned_cols=101  Identities=17%  Similarity=0.341  Sum_probs=73.5

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCc----ccCCCcceEEEEeCC-
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE----DVLNKQYAFELSTRT-  100 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~----~~~~~~~~f~i~~~~-  100 (143)
                      .+..+|||++++...+.|++|||+|+++.|+|+.....+........+.|.++.+.....    -....+++|.|..+. 
T Consensus       157 ~pe~~G~L~~k~~~~k~WkkRyfvLr~sgLyy~~K~~sk~~r~l~~l~~L~~~~VY~~~~~kkk~kaPt~~~F~ik~~~~  236 (281)
T 4gmv_A          157 VPEIEGVLWLKDDGKKSWKKRYFLLRASGIYYVPKGKAKVSRDLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLVLKHPQI  236 (281)
T ss_dssp             CCCCEEEEEEECTTSSCEEEEEEEECSSCEEEC---------CCEEEECGGGCEEEEESSHHHHTCCSCSCEEEEECTTC
T ss_pred             CCccEEEEEEECCCCCCCeEEEEEEeCCEEEEEeCCCCCccccceEEEEcCCcEEEEecccccccCCCCCcEEEEecCcc
Confidence            456899999998778999999999999999998876532223345667888864433321    123458999999753 


Q ss_pred             -----eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301          101 -----ETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus       101 -----~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                           ..++|+|+|++++..|+.||+.+...
T Consensus       237 ~~~~~~~~~~caede~~~~~Wv~Air~ak~g  267 (281)
T 4gmv_A          237 QKKSQYIKYLCCDDVRTLHQWVNGIRIAKYG  267 (281)
T ss_dssp             CSCCTTCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCceEEEEeCCHHHHHHHHHHHHHHhhC
Confidence                 46999999999999999999988764

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A

Probab=99.56  E-value=3.7e-14  Score=91.61  Aligned_cols=94  Identities=20%  Similarity=0.286  Sum_probs=79.5

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEEE
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYF  105 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~~  105 (143)
                      .+++.|+|.|+.+.  .|++|||+|++...+||-++.   .....+.|+++.++.++..+     ...|.|.+++++|+|
T Consensus        51 ~Ilk~G~v~KrkGl--~~kkR~liLT~~PrL~Yvdp~---~~~~KGeIpls~~l~ve~k~-----~~~F~I~Tp~RtY~~  120 (151)
T 1w1g_A           51 LILKMGPVDKRKGL--FARRRQLLLTEGPHLYYVDPV---NKVLKGEIPWSQELRPEAKN-----FKTFFVHTPNRTYYL  120 (151)
T ss_dssp             CEEEEEEEEEEETT--EEEEEEEEEETTTEEEEEETT---TTEEEEEECCCTTCEEEESS-----SSEEEEEETTEEEEE
T ss_pred             cEEEEEEEEecccC--cceeEEEEEcCCceEEEEcCc---cccccceEecCCCeeEEEcC-----CCEEEEECCCceEEE
Confidence            57999999997554  499999999999999999887   56788999999866666543     359999999999999


Q ss_pred             EcCCHHHHHHHHHHHHHHHHhhCCC
Q 032301          106 IADSEKEKEDWINSIGRSIVQHSRS  130 (143)
Q Consensus       106 ~a~s~~e~~~W~~al~~~~~~~~~~  130 (143)
                      .+. ..++++|+.||+.++......
T Consensus       121 ~d~-~~~AqeWv~aI~~~~~~~~~~  144 (151)
T 1w1g_A          121 MDP-SGNAHKWCRKIQEVWRQRYQS  144 (151)
T ss_dssp             ECT-TSCHHHHHHHHHHHHHHHHCC
T ss_pred             EcC-ccCHHHHHHHHHHHHHHHhcc
Confidence            887 888999999999999875543

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.54  E-value=8.3e-15  Score=110.69  Aligned_cols=98  Identities=28%  Similarity=0.523  Sum_probs=72.0

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEE-CCeEEEEecCCCCCCCCcceEEeCCceEEeec--CcccCCCcceEEEEeCC-e
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLK-QGKLFWFKESTVTRASKPRGVIPVASCLTVKG--AEDVLNKQYAFELSTRT-E  101 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~-~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~--~~~~~~~~~~f~i~~~~-~  101 (143)
                      .++++|||.|+++..+.|++|||+|. ++.+.||+++.   ...+.+.++|..++.+..  ......++++|.|.+++ .
T Consensus         5 ~v~keG~L~K~g~~~k~Wk~r~fvL~~~~~l~yyk~~~---~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~I~~~~~~   81 (446)
T 4ejn_A            5 AIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERP---QDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWT   81 (446)
T ss_dssp             CEEEEEEEEEEETTTTEEEEEEEEEETTSBEEEESSCC----------CCCGGGBCTTCEEEEECSSSTTEEEEEEEETT
T ss_pred             eEEEEeeEEeeccccccccceEEEEeeCCEEEEEecCC---CCCccCcccccCccccceeecCCCCCCCceeEEEcCCCc
Confidence            47899999999988899999999997 89999999987   455677888877432211  11113557899998765 2


Q ss_pred             E---EEEEcCCHHHHHHHHHHHHHHHHh
Q 032301          102 T---MYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus       102 ~---~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      .   ..|.+++.+++.+|+.||+.++..
T Consensus        82 ~~~~r~~~~~~~ee~e~W~~ai~~~i~~  109 (446)
T 4ejn_A           82 TVIERTFHVETPEEREEWTTAIQTVADG  109 (446)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHHHHHCCC
T ss_pred             eeeeeEEecCCHHHHHHHHHHHHhhhhh
Confidence            2   378999999999999999998653

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.45  E-value=1.9e-12  Score=80.72  Aligned_cols=100  Identities=20%  Similarity=0.344  Sum_probs=83.1

Q ss_pred             cCCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCccc-----CCCcceEEEEe
Q 032301           24 WSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDV-----LNKQYAFELST   98 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~-----~~~~~~f~i~~   98 (143)
                      .+.++++||+-+....-+.|+|+|++|..+.+.+|+++.   ...+...|+|..+..++.....     ...+|+|.|.+
T Consensus         5 ~s~vlkeGW~VH~t~~d~~rKRHYWrLD~K~Itlf~~e~---~~~~ykeIpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T   81 (125)
T 2coa_A            5 SSGTLREGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNT---TNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVT   81 (125)
T ss_dssp             CCSCSEEEEEEECCSSSCCCEEEEEEECSSEEEEESSSS---CSSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEEC
T ss_pred             CCceeecceEEEEccCCccccceeeEecCCeEEEEecCC---CCceeeeeehhHeecccccccccccCCCCCCceEEEEe
Confidence            456899999999877778999999999999999999987   6678999999998888765422     13569999999


Q ss_pred             CCeEEEEEcC-----------CHHHHHHHHHHHHHHHHh
Q 032301           99 RTETMYFIAD-----------SEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        99 ~~~~~~~~a~-----------s~~e~~~W~~al~~~~~~  126 (143)
                      .+.+||+.++           ..+.+..|..||+.|+..
T Consensus        82 ~~~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqALmP  120 (125)
T 2coa_A           82 ANATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQALMS  120 (125)
T ss_dssp             SSCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHGGG
T ss_pred             CCeEEEEccCCCCCCCCcCccccHHHHHHHHHHHhhccC
Confidence            9999999863           125699999999998864

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=2.5e-11  Score=75.90  Aligned_cols=101  Identities=19%  Similarity=0.319  Sum_probs=83.4

Q ss_pred             cCCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCccc-----CCCcceEEEEe
Q 032301           24 WSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDV-----LNKQYAFELST   98 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~-----~~~~~~f~i~~   98 (143)
                      .+.++++|||-.....-..|+|+|+.|..+.+.+|.++.   ...+...|+|..+..++.....     ...+|||.|.+
T Consensus         5 ~s~vlkeGWmVH~t~~d~~rKRHYWrLD~K~Itlf~~e~---~~k~ykeIpLseIL~v~~~~~~~~~~~~~~phcFEi~T   81 (129)
T 2d9z_A            5 SSGMVKEGWMVHYTSRDNLRKRHYWRLDSKCLTLFQNES---GSKYYKEIPLSEILRISSPRDFTNISQGSNPHCFEIIT   81 (129)
T ss_dssp             CTTSEEEEEEEEEESSCCCCEEEEEEEESSCEEEESCSS---CCSCCCEECTTTCCEECCTTCCCCSSSCSCCCSEEEEC
T ss_pred             CCceeecceEEEEccCCccccceeeEecCCeEEEEecCC---CCceeceeeHHHhcccccccCccccCCCCCCceEEEEE
Confidence            356899999988766557899999999999999999987   5678889999998888775422     12459999999


Q ss_pred             CCeEEEEEcCC---------------HHHHHHHHHHHHHHHHhh
Q 032301           99 RTETMYFIADS---------------EKEKEDWINSIGRSIVQH  127 (143)
Q Consensus        99 ~~~~~~~~a~s---------------~~e~~~W~~al~~~~~~~  127 (143)
                      .+.+||+.++.               .+.+..|..||+.|+..-
T Consensus        82 ~~~~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqALmP~  125 (129)
T 2d9z_A           82 DTMVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALMSG  125 (129)
T ss_dssp             SSCEEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhccCC
Confidence            99999988643               689999999999998743

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.24  E-value=4.9e-10  Score=71.37  Aligned_cols=107  Identities=17%  Similarity=0.266  Sum_probs=81.2

Q ss_pred             cccCCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC-
Q 032301           22 EFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT-  100 (143)
Q Consensus        22 ~~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~-  100 (143)
                      ....++++.|.+..+.+..+.-+.|||+|.++.|.|.+.......-...+.++|.+.. |...++....+|+|.|..+. 
T Consensus        23 ~~lG~ii~~s~v~~~~~~~~~~~eR~l~LF~~~Ll~~s~~~~~~~f~~kgklPL~g~~-V~~~ed~~~~~~aFeI~g~~~  101 (132)
T 1v61_A           23 KTLGNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMV-VNRLDEIEGSDCMFEITGSTV  101 (132)
T ss_dssp             TTTCCCSCEEEEEBCCSSSSCCCEEEEEECSSCEEEEECSSSSSCCEEEEEECTTTCB-CSTTCSSSSSCCCEEEECSSS
T ss_pred             hhcCCeEEEeeEEEEEcccCcceEEEEEEcCCeEEEEEecCCCceEEEEEEEecceeE-EEeccccccCccEEEEecCCC
Confidence            3445678888777764434455789999999999888765421133466899999974 44444445679999999887 


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHHHHhhCC
Q 032301          101 ETMYFIADSEKEKEDWINSIGRSIVQHSR  129 (143)
Q Consensus       101 ~~~~~~a~s~~e~~~W~~al~~~~~~~~~  129 (143)
                      +++.+.|.|.+|+++|+.+|+.++..+.+
T Consensus       102 ~~i~v~~~s~eE~~~Wl~~L~~~i~~~~~  130 (132)
T 1v61_A          102 ERIVVHCNNNQDFQEWMEQLNRLTKSGPS  130 (132)
T ss_dssp             CEEEECCCCSHHHHHHHHHHHHHHTTSCS
T ss_pred             ceEEEEeCCHHHHHHHHHHHHHHHhhccc
Confidence            88999999999999999999999986653

>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.99  E-value=1.5e-08  Score=63.61  Aligned_cols=100  Identities=19%  Similarity=0.333  Sum_probs=76.4

Q ss_pred             CCCceEEEEEEeC--------CCCCCceeEEEEEEC------CeEEEEecCCCCCCCCcceEEeCCceEEeecCc--ccC
Q 032301           25 SNPERSGWLTKQG--------EYIKTWRRRWFVLKQ------GKLFWFKESTVTRASKPRGVIPVASCLTVKGAE--DVL   88 (143)
Q Consensus        25 ~~~~~~G~L~k~~--------~~~~~w~~r~~vL~~------~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~--~~~   88 (143)
                      .+++++|.|.-..        .....|++++++|..      ..|-||..++   ...|+..|.+..+..|....  +..
T Consensus        16 ~e~~kEG~l~~~~~~~~~~~~~~~~~W~k~RLvL~k~g~G~~y~LEfy~PPk---ssKpK~~i~cs~I~EVR~tt~LEmP   92 (136)
T 1v5m_A           16 VDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPK---ASRPKVSIPLSAIIEVRTTMPLEMP   92 (136)
T ss_dssp             CSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTT---SSSCSSCEETTTCCBCCCCCCSSSC
T ss_pred             ceeeeeeeeeeecccccccccCcccchhheeeEEEEccCCCceEEEEecCCc---ccCCccccchhhhhhhhhccccccC
Confidence            3578999996542        134589999999962      3578887777   56788888888765554332  224


Q ss_pred             CCcceEEEEeCCe-EEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301           89 NKQYAFELSTRTE-TMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus        89 ~~~~~f~i~~~~~-~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      .+.|+|.|...+. .|+|.|.|..+++.|+..|+.++...
T Consensus        93 D~~nTFVlK~~n~~eyi~ea~d~~q~~sWla~Ir~C~~~g  132 (136)
T 1v5m_A           93 EKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVDSG  132 (136)
T ss_dssp             CCTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHHHHS
T ss_pred             CccceEEEEecCCcEEEEEcCCHHHHHHHHHHHHhhcCCC
Confidence            5689999999886 79999999999999999999988753

>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}

Probab=98.96  E-value=1.1e-08  Score=69.71  Aligned_cols=97  Identities=14%  Similarity=0.258  Sum_probs=79.5

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEEC------C-eEEEEecCCCCC-CCCcceEEeCCceEEeecCcccCCCcceEEEE
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQ------G-KLFWFKESTVTR-ASKPRGVIPVASCLTVKGAEDVLNKQYAFELS   97 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~------~-~l~~~~~~~~~~-~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~   97 (143)
                      ..+.||.+..+.  .+.|+.||+||+.      . .|..|++..++. ...+..++.|..+..++..-...+..+++.|.
T Consensus         8 ~~v~eg~vk~r~--~KkWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~~~KaslsL~~~~GlE~g~~ldk~s~TlAII   85 (224)
T 3ml4_A            8 AALVEGQVKLRD--GKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPALPYEGLAHTLAII   85 (224)
T ss_dssp             CCSEEEEEEEC-----CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCCCCSEEEEECCEEEEEEEEEETTEEEEEEEE
T ss_pred             ceeEEEeeeeec--CCceeeEEEEEEcCCCchheEEEEEEcChhhhhcCCcccceeehHHhcCccccccccCcccEEEEE
Confidence            478899998875  4699999999973      2 688898877422 35568889999988888877777889999999


Q ss_pred             eCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 032301           98 TRTETMYFIADSEKEKEDWINSIGRSI  124 (143)
Q Consensus        98 ~~~~~~~~~a~s~~e~~~W~~al~~~~  124 (143)
                      +.+.++.|.+++.+.+..|...|+...
T Consensus        86 c~d~~~vLAFds~e~l~~W~~~l~~sl  112 (224)
T 3ml4_A           86 CLSQAVMLGFDSHEAMCAWDTRIRYAL  112 (224)
T ss_dssp             ESSCEEEEECSSHHHHHHHHHHHHHHT
T ss_pred             ecCcEEEEEeCCHHHHHHHHHHHhhcc
Confidence            999999999999999999999997654

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*

Probab=98.85  E-value=2e-07  Score=57.81  Aligned_cols=100  Identities=17%  Similarity=0.134  Sum_probs=72.5

Q ss_pred             CCceEEEEEEeCCCC-CCceeEEEEEECCeEEEEecCCCCCC-CCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEE
Q 032301           26 NPERSGWLTKQGEYI-KTWRRRWFVLKQGKLFWFKESTVTRA-SKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETM  103 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~-~~w~~r~~vL~~~~l~~~~~~~~~~~-~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~  103 (143)
                      ..+++|.|.+..... +.-++.+|+|-++.|.|......... -.-...++|.+..++. .++...-++.|.|.+..+++
T Consensus         7 ~lv~eG~l~el~~~~~k~~~~v~~FLfND~Ll~a~~~~~~~~~~~~~~~~~L~~~~v~d-~~d~~~~~n~f~i~~~~~s~   85 (113)
T 1zc3_B            7 YLVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVN-VKDNPPMKDMFKLLMFPESR   85 (113)
T ss_dssp             CEEEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEEEE-ECCBTTBSSEEEEEETTEEE
T ss_pred             EEEEeCcEEEEccccCCCCccEEEEecCCEEEEEEEeccCcccEEEEEEEEcccCEEEE-CCCCcccceEEEEEeCCceE
Confidence            358899998875322 23356789999998888876432101 1233457888864443 34444669999999999999


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHHh
Q 032301          104 YFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus       104 ~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      .++|+|.+|..+|+.+|+.|+..
T Consensus        86 ~~~aes~~eK~~Wl~~~~~a~~~  108 (113)
T 1zc3_B           86 IFQAENAKIKREWLEVLEETKRA  108 (113)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEcCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999864

>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}

Probab=98.57  E-value=2.9e-06  Score=54.17  Aligned_cols=97  Identities=11%  Similarity=0.018  Sum_probs=68.8

Q ss_pred             ceEEEEEEeC----CCCCCceeEEEEEECCeEEEEecCC---CCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC
Q 032301           28 ERSGWLTKQG----EYIKTWRRRWFVLKQGKLFWFKEST---VTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT  100 (143)
Q Consensus        28 ~~~G~L~k~~----~~~~~w~~r~~vL~~~~l~~~~~~~---~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~  100 (143)
                      +-.+-|....    ...+.-+.|+|.|.++.|.|.+...   ....-.....++|.+..+.....+  .-+|+|.|....
T Consensus        14 vc~~~l~ev~d~~K~~~kg~qqR~~FLFND~LL~TK~~~kkk~~~~Y~vr~~~~L~gm~V~~~e~e--~~p~~~~l~s~~   91 (140)
T 3qwm_A           14 VCYCRLFEVPDPNKPQKLGLHQREIFLFNDLLVVTKIFQKKKNSVTYSFRQSFSLYGMQVLLFENQ--YYPNGIRLTSSV   91 (140)
T ss_dssp             EEEEEEEECSCTTSCCCTTTTEEEEEEESSCEEEEECCC---CCCCCCCEEEECCTTEEEEEECCS--SCTTEEEEEECC
T ss_pred             EEEEeeeeeccCcccccccccceEEEEecchhhheeecccCCCCCceEEEEEeeecceEEEcccCC--CCceEEEEEecC
Confidence            4455554431    1234568999999999999986222   111234667888998655444332  468999999753


Q ss_pred             ------eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301          101 ------ETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus       101 ------~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                            ..+.|.|.|..|+..|+.+|+.+|..
T Consensus        92 ~G~~~k~~i~~~A~s~~ER~rwi~dL~esI~e  123 (140)
T 3qwm_A           92 PGADIKVLINFNAPNPQDRKKFTDDLRESIAE  123 (140)
T ss_dssp             TTSCCEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCcceEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence                  56999999999999999999999874

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A

Probab=98.45  E-value=2.3e-06  Score=62.82  Aligned_cols=97  Identities=19%  Similarity=0.242  Sum_probs=73.0

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCC--------CCCCcceEEeCCceEEeecCcccCCCcceEEE
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVT--------RASKPRGVIPVASCLTVKGAEDVLNKQYAFEL   96 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~--------~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i   96 (143)
                      ...+++|.|.+.+    .++.+++.|.++.|.+.+.....        ..-.....++|..+...+ .++....++.|.|
T Consensus       245 r~li~eG~l~~~g----~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~-~~d~~~~~~~F~i  319 (354)
T 1dbh_A          245 NEFIMEGTLTRVG----AKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQIND-KDDTNEYKHAFEI  319 (354)
T ss_dssp             CCEEEEEEEEETT----CSSCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEE-CCCSSSCCSEEEE
T ss_pred             ceEEEEeeEEEEe----cCceEEEEEeCCEEEEEecCCCCCCCCCCCCcceeEEEEEeccceEEEe-CCcccccCccEEE
Confidence            4568899998873    56889999999999888765310        011234788898875443 3333355799999


Q ss_pred             EeCC-eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           97 STRT-ETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        97 ~~~~-~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      .... ..+.|+|.|.++...|+.+|+.+..+
T Consensus       320 ~~~~~~~~~l~a~s~~ek~~W~~~i~~~~~~  350 (354)
T 1dbh_A          320 ILKDENSVIFSAKSAEEKNNWMAALISLQYR  350 (354)
T ss_dssp             CCTTSCCEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred             ecCCCCEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence            9885 88999999999999999999988764

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=98.43  E-value=2.1e-06  Score=64.66  Aligned_cols=98  Identities=18%  Similarity=0.291  Sum_probs=69.7

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEE
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMY  104 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~  104 (143)
                      ...+++|.|.+..+  +.++.+|++|..+.|.+.+..... .-.....++|.++...+..  ....++.|.|.++.+.+.
T Consensus       242 r~li~~g~l~~~~~--~~~~~r~~fLF~d~Ll~~k~~~~~-~y~~k~~i~L~~l~v~~~~--~~~~~~~f~i~~~~~~~~  316 (434)
T 3mpx_A          242 REFLKEGTLMKVTG--KNRRPRHLFLMNDVLLYTYPQKDG-KYRLKNTLAVANMKVSRPV--MEKVPYALKIETSESCLM  316 (434)
T ss_dssp             CCEEECCEEEEEET--TEEEEEEEEEESSEEEEEEECTTS-CEEEEEEEEC-----CCCC--CTTSCSEEEEECSSCEEE
T ss_pred             cceEecceEEEEeC--CCceEEEEEEECCEEEEEEecCCC-eEEEEEEEEcCCcEEEecC--CCCCCeeEEEecCCeEEE
Confidence            34688999987643  357899999999999998865421 2234578888886443322  235689999999999999


Q ss_pred             EEcCCHHHHHHHHHHHHHHHHhh
Q 032301          105 FIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus       105 ~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      |+|.|.++...|+.+|+.++...
T Consensus       317 l~a~s~~ek~~W~~~i~~ai~e~  339 (434)
T 3mpx_A          317 LSASSCAERDEWYGCLSRALPED  339 (434)
T ss_dssp             EECSSHHHHHHHHHHHHHC----
T ss_pred             EecCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999754

>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}

Probab=98.33  E-value=7.4e-06  Score=55.05  Aligned_cols=103  Identities=19%  Similarity=0.216  Sum_probs=69.7

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCC----CCCcceEEeCCceEEeecCcccCCCcceEEEEeC-
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTR----ASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTR-   99 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~----~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~-   99 (143)
                      ...+++|.|..+... +.++.+|++|..+.|.+.......-    ......++.|.++.+.+...   ..+..|.|... 
T Consensus        69 R~Ll~eG~L~~k~~~-~~~~d~~~fLf~D~Ll~~~~~~~ky~~~~~~~~~pvi~L~~~~vre~a~---d~~~~fli~~~~  144 (185)
T 2lg1_A           69 KKLVRDGSVFLKNAA-GRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAH---EEKGLFLISMGM  144 (185)
T ss_dssp             SCEEEEEEEEEECTT-CCEEEEEEEEESSEEECCEEETTEEECCCCSSSCSEEESSSCEEECCSS---CSSEEEEECCSS
T ss_pred             CceeeeceEEEeccC-CCeeeEEEEeecCEEEEEEecCCEEEEEcccCCCCeEeecceEEeccCC---CCCeEEEEEecC
Confidence            457899999866433 4789999999999887775432100    00023567888865443322   22344455433 


Q ss_pred             --CeEEEEEcCCHHHHHHHHHHHHHHHHhhCCCC
Q 032301          100 --TETMYFIADSEKEKEDWINSIGRSIVQHSRSV  131 (143)
Q Consensus       100 --~~~~~~~a~s~~e~~~W~~al~~~~~~~~~~~  131 (143)
                        .+.|-|+|.|..+...|+.+|+.|+....+..
T Consensus       145 ~g~~~yel~a~s~~er~~W~~~I~~Ai~~~~~~~  178 (185)
T 2lg1_A          145 TDPEMVEVHASSKEERNSWIQIIQDTINTLNRDE  178 (185)
T ss_dssp             SCCCCEEEECSSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCeEEEEEcCCHHHHHHHHHHHHHHHHhCChhh
Confidence              36899999999999999999999998765443

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1

Probab=98.32  E-value=2e-05  Score=58.83  Aligned_cols=105  Identities=17%  Similarity=0.155  Sum_probs=75.4

Q ss_pred             ccCCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCC-CCCcceEEeCCceEEeecCcccC-----CCcceEEE
Q 032301           23 FWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTR-ASKPRGVIPVASCLTVKGAEDVL-----NKQYAFEL   96 (143)
Q Consensus        23 ~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~-~~~~~~~i~l~~~~~v~~~~~~~-----~~~~~f~i   96 (143)
                      .....+++|.|.+.....+..+.++++|.++.|.+.+...... .....+.|++.++...+..+...     .-++.|.|
T Consensus       253 ~~r~Li~~G~l~~~~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i  332 (402)
T 2dfk_A          253 RSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKL  332 (402)
T ss_dssp             TCCCEEEEEEEEEESSTTCCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEEEE
T ss_pred             cccceEEeceEEEEeccCCceEEEEEEeeCCEEEEEEeccccCCceEEeeeeeccceEEEecCCCCccccccccceeEEE
Confidence            3446789999988764334678999999999999988653111 12245788888865443322111     12579999


Q ss_pred             EeC--CeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301           97 STR--TETMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus        97 ~~~--~~~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      ...  ...+.|+|.|.++...|+.+|+.++...
T Consensus       333 ~~~~~~~~~~l~a~s~~eK~~Wi~~i~~a~~~~  365 (402)
T 2dfk_A          333 HNKETEEVHLFFAKKLEEKIRWLRAFREERKMV  365 (402)
T ss_dssp             EESSSSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence            876  4689999999999999999999987753

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=98.31  E-value=2.9e-05  Score=59.02  Aligned_cols=106  Identities=19%  Similarity=0.234  Sum_probs=77.1

Q ss_pred             cCCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCC-CCCcceEEeCCceEEeecCccc-----CCCcceEEEE
Q 032301           24 WSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTR-ASKPRGVIPVASCLTVKGAEDV-----LNKQYAFELS   97 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~-~~~~~~~i~l~~~~~v~~~~~~-----~~~~~~f~i~   97 (143)
                      ....+++|.|.+.....+..+.++++|.++.|.+.+...... .-.....|++.++...+..+..     ...++.|.|.
T Consensus       331 ~r~li~~G~l~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~  410 (466)
T 2pz1_A          331 SSELIYSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLH  410 (466)
T ss_dssp             CSCEEEEEEEEEECTTTCCEEEEEEEEETTEEEEEEECSSCTTCEEEEEEEETTTCEEEECCSBSCCSSCCCBCEEEEEE
T ss_pred             cceeEEeeeEEEEecCCCCeeEEEEEEECCEEEEEEeccccCCceEEeeeeeccceEEEeCCCCcccccccccceeEEEE
Confidence            346789999988764345678999999999999988653211 1224578889886544433211     1236899998


Q ss_pred             eC--CeEEEEEcCCHHHHHHHHHHHHHHHHhhCC
Q 032301           98 TR--TETMYFIADSEKEKEDWINSIGRSIVQHSR  129 (143)
Q Consensus        98 ~~--~~~~~~~a~s~~e~~~W~~al~~~~~~~~~  129 (143)
                      ..  ...+.|+|.|.++...|+.+|+.++.....
T Consensus       411 ~~~~~~~~~l~a~s~~eK~~W~~~i~~a~~~~~~  444 (466)
T 2pz1_A          411 RGATGDSHLLCTRKPEQKQRWLKAFAREREQVQL  444 (466)
T ss_dssp             CSSSCCEEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred             eCCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Confidence            76  468999999999999999999999886443

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=98.30  E-value=2.1e-05  Score=58.73  Aligned_cols=104  Identities=13%  Similarity=0.118  Sum_probs=74.7

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcc---cCCCcceEEEEeC--
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAED---VLNKQYAFELSTR--   99 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~---~~~~~~~f~i~~~--   99 (143)
                      +..+++|.|.......+..+.++++|.++.|.+.+....  .-.....++|..+...+....   ...-++.|.|...  
T Consensus       232 grli~~G~l~~~~~~~~~~~~~~~fLF~d~Ll~~k~k~~--~y~~k~~i~l~~~~v~~~~~~~~~~~~~~~~F~i~~~~~  309 (406)
T 2vrw_B          232 GRPKIDGELKITSVERRSKTDRYAFLLDKALLICKRRGD--SYDLKASVNLHSFQVRDDSSGERDNKKWSHMFLLIEDQG  309 (406)
T ss_dssp             CSEEEEEEEEEECSSCCSCEEEEEEEESSEEEEEEEETT--EEEEEEEEETTTEEEEC--------CTTCEEEEEEETTC
T ss_pred             CcccccccEEEEecCCCccceEEEEecCCEEEEEEecCC--ceEEEEEecccceeeeecCCCCccCCccceeeEEEecCC
Confidence            446889999887544456789999999999988876531  223456888888644332221   1123689999874  


Q ss_pred             CeEEEEEcCCHHHHHHHHHHHHHHHHhhCCC
Q 032301          100 TETMYFIADSEKEKEDWINSIGRSIVQHSRS  130 (143)
Q Consensus       100 ~~~~~~~a~s~~e~~~W~~al~~~~~~~~~~  130 (143)
                      ...+.|+|.|.++...|+.+|+.++....+.
T Consensus       310 ~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~~  340 (406)
T 2vrw_B          310 AQGYELFFKTRELKKKWMEQFEMAISNIYPE  340 (406)
T ss_dssp             SCEEEEEESSHHHHHHHHHHHHHHHHHHSCT
T ss_pred             CceEEEeCCCHHHHHHHHHHHHHHHhhhhhc
Confidence            5789999999999999999999999865543

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=98.27  E-value=2.5e-06  Score=59.14  Aligned_cols=37  Identities=32%  Similarity=0.874  Sum_probs=33.8

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCC
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKEST   62 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~   62 (143)
                      .+-.+|||.++++..+.|++|||||+++.+.||+...
T Consensus        20 ~~~~~g~l~~~~~~~~~w~~rw~vl~~~~~~~~~~~~   56 (228)
T 3tfm_A           20 SPYFHSFLYMNGGLMNSWKRRWCVLKDETFLWFRSKQ   56 (228)
T ss_dssp             -CCEEEEEEECCTTTCCCEEEEEEEETTEEEEESSCC
T ss_pred             CCceEEEEeecCcccccceEEEEEEeCCEEEEeccCC
Confidence            5788999999999999999999999999999999776

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=98.27  E-value=1.7e-05  Score=62.03  Aligned_cols=104  Identities=13%  Similarity=0.113  Sum_probs=77.4

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcc---cCCCcceEEEEeCC-
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAED---VLNKQYAFELSTRT-  100 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~---~~~~~~~f~i~~~~-  100 (143)
                      +..+++|.|.......+..+.++++|..+.|.+.+....  .-.....++|..+...+....   ...-++.|.|.... 
T Consensus       404 grll~~G~l~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~--~y~~k~~i~L~~~~v~~~~~~~~~~~~~~~~f~i~~~~~  481 (587)
T 3ky9_A          404 GRPKIDGELKITSVERRSKMDRYAFLLDKALLICKRRGD--SYDLKDFVNLHSFQVRDDSSGDRDNKKWSHMFLLIEDQG  481 (587)
T ss_dssp             CCEEEEEEEEEECSSCCSCEEEEEEEETTEEEEEEEETT--EEEEEEEEEGGGEEEEEC-----CCCTTCEEEEEEETTC
T ss_pred             CceEEEeeEEEEeccCCCcceEEEEEECCEEEEEEecCC--EEEeeeeechhhceeeecCCCCcccccccceeEEEEcCC
Confidence            446889999887655567899999999999998876531  234568888998654443221   12346899999875 


Q ss_pred             -eEEEEEcCCHHHHHHHHHHHHHHHHhhCCC
Q 032301          101 -ETMYFIADSEKEKEDWINSIGRSIVQHSRS  130 (143)
Q Consensus       101 -~~~~~~a~s~~e~~~W~~al~~~~~~~~~~  130 (143)
                       +.+.|+|.|.++...|+.+|+.++....+.
T Consensus       482 ~~~~~L~A~S~eeK~~Wi~~I~~ai~~~~~~  512 (587)
T 3ky9_A          482 AQGYELFFKTRELKKKWMEQFEMAISNIYPE  512 (587)
T ss_dssp             ---CEEEESSHHHHHHHHHHHHHHHHHHSCT
T ss_pred             CceEEEEeCCHHHHHHHHHHHHHHhhhhccc
Confidence             789999999999999999999999876544

>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1

Probab=98.26  E-value=2.7e-05  Score=49.33  Aligned_cols=84  Identities=15%  Similarity=0.353  Sum_probs=57.7

Q ss_pred             eeEEEEEECCeE-EEEecCCCCCCCCcceEEeCCceEEeecCcc---------cCCCcceEEEEeCC--eEEEEEcCCHH
Q 032301           44 RRRWFVLKQGKL-FWFKESTVTRASKPRGVIPVASCLTVKGAED---------VLNKQYAFELSTRT--ETMYFIADSEK  111 (143)
Q Consensus        44 ~~r~~vL~~~~l-~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~---------~~~~~~~f~i~~~~--~~~~~~a~s~~  111 (143)
                      +.++|+|..+.. .|+.+.. .......+.++|..+..|.....         ......+|+|...+  +++.|.|+|.+
T Consensus        29 k~r~f~l~~~~~~~w~~s~~-~~~~~~~~~i~i~~I~eIr~G~~s~~~~~~~~~~~~~~~FsIiy~~~~k~LdlvA~s~~  107 (131)
T 1mai_A           29 RERFYKLQEDCKTIWQESRK-VMRSPESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDLIAPSPA  107 (131)
T ss_dssp             EEEEEEECTTSSEEEECCCC-TTCCTTTTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEEESSSCCCEEEECSSHH
T ss_pred             eeEEEEECCCCCEEEeCCcC-CCCCCcCcEEEHhhhHHHHCCCCCHHHHhhhhcCCccceEEEEECCCCceEEEEeCCHH
Confidence            678888876544 4543221 11233678899998766655431         11346899999987  68999999999


Q ss_pred             HHHHHHHHHHHHHHhhC
Q 032301          112 EKEDWINSIGRSIVQHS  128 (143)
Q Consensus       112 e~~~W~~al~~~~~~~~  128 (143)
                      +++.|+.+|+..+....
T Consensus       108 e~~~Wv~gL~~L~~~~~  124 (131)
T 1mai_A          108 DAQHWVQGLRKIIHHSG  124 (131)
T ss_dssp             HHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999998876543

>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}

Probab=98.09  E-value=9e-05  Score=55.47  Aligned_cols=101  Identities=12%  Similarity=0.112  Sum_probs=69.8

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCC---------------CCCcceEEeCCceEEeecCcccCC
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTR---------------ASKPRGVIPVASCLTVKGAEDVLN   89 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~---------------~~~~~~~i~l~~~~~v~~~~~~~~   89 (143)
                      ...+++|.|.+... .+.++.++++|..+.|.+.+.....-               .......+.+.++...+. .   .
T Consensus       293 r~li~eG~l~~~~~-~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~k~~i~l~~~~v~~~-~---~  367 (418)
T 3t06_A          293 RKMIHEGPLTWRIS-KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSV-A---T  367 (418)
T ss_dssp             SCEEEEEEEEECCB-TTBCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEEC-S---S
T ss_pred             ceeEEeceEEEEeC-CCCeEEEEEEecCCEEEEEEEcCCceEEeecccccccCCCcccccCCceechhceeccc-c---c
Confidence            45789999987643 24678999999999999887543100               011235788887643322 1   3


Q ss_pred             CcceEEEEeC-----CeEEEEEcCCHHHHHHHHHHHHHHHHhhCCC
Q 032301           90 KQYAFELSTR-----TETMYFIADSEKEKEDWINSIGRSIVQHSRS  130 (143)
Q Consensus        90 ~~~~f~i~~~-----~~~~~~~a~s~~e~~~W~~al~~~~~~~~~~  130 (143)
                      ....|.|...     .+.|.|+|.|.++...|+.+|+.++..+.+.
T Consensus       368 ~~~~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~~~~~~  413 (418)
T 3t06_A          368 DKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNAHHH  413 (418)
T ss_dssp             CSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHTC---
T ss_pred             cCceEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHhcCccc
Confidence            3457776653     2789999999999999999999999976654

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A

Probab=98.08  E-value=0.00012  Score=52.69  Aligned_cols=100  Identities=18%  Similarity=0.172  Sum_probs=69.8

Q ss_pred             CCCceEEEEEEeCC--CCCCceeEEEEEECCeEEEEecCCCCCC---CCcceEEeCCceEEeecCcccCCCcceEEEEeC
Q 032301           25 SNPERSGWLTKQGE--YIKTWRRRWFVLKQGKLFWFKESTVTRA---SKPRGVIPVASCLTVKGAEDVLNKQYAFELSTR   99 (143)
Q Consensus        25 ~~~~~~G~L~k~~~--~~~~w~~r~~vL~~~~l~~~~~~~~~~~---~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~   99 (143)
                      +..+..|.+....+  ..+..+.+++.|..+.|.+.+.......   -...+.+++..+...+..+   +.++.|.|...
T Consensus       201 g~li~~~~~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~y~~k~~i~l~~~~v~e~~~---~~~~~F~i~~~  277 (311)
T 1nty_A          201 GELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVE---GDPCKFALWVG  277 (311)
T ss_dssp             CCEEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTTCCEEEEEEEEEEGGGEEEECCCT---TCTTEEEEEES
T ss_pred             CCceeeeeEEEEcCcccccccceeEEEeccCeEEEEEeeccCCCCceeEEeeeeeccceeeEEccC---CCCceEEEEeC
Confidence            45677787766532  2346789999999999988875431101   1234677888764433222   34688999862


Q ss_pred             -----CeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301          100 -----TETMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus       100 -----~~~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                           ...+.|+|.|.++...|+.+|+.++..+
T Consensus       278 ~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~e~  310 (311)
T 1nty_A          278 RTPTSDNKIVLKASSIENKQDWIKHIREVIQER  310 (311)
T ss_dssp             SSCCTTTCEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCceEEEECCCHHHHHHHHHHHHHHHhhh
Confidence                 3678999999999999999999998754

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.05  E-value=7.5e-05  Score=60.01  Aligned_cols=91  Identities=20%  Similarity=0.414  Sum_probs=65.6

Q ss_pred             CceEEEEEEeCC--CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC----
Q 032301           27 PERSGWLTKQGE--YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT----  100 (143)
Q Consensus        27 ~~~~G~L~k~~~--~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~----  100 (143)
                      ++..|||.....  ..+.-+..||||+...|.||++++   .......++|.+...-........+++.|.|..++    
T Consensus       540 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  616 (772)
T 3zvr_A          540 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDE---EKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNV  616 (772)
T ss_dssp             EEEEEEEEESSSCCC---CCEEEEEEESSEEEEESSTT---CCCEEEEEECTTEEEEEC-------CEEEEEEETTSSCS
T ss_pred             ceeeeeeeecccccccCCCccceeeccccccccccchh---hhcccccccccccccchhhhccccccccccccCCccccc
Confidence            678899987532  334568999999999999999987   44467788888754333333345678999999865    


Q ss_pred             ----eEEEEEcCCHHHHHHHHHHH
Q 032301          101 ----ETMYFIADSEKEKEDWINSI  120 (143)
Q Consensus       101 ----~~~~~~a~s~~e~~~W~~al  120 (143)
                          +.+-+.|++.++...|...+
T Consensus       617 ~~~~~~~~l~~~~~~~~~~~~~~~  640 (772)
T 3zvr_A          617 YKDYRQLELACETQEEVDSWKASF  640 (772)
T ss_dssp             BTTBSEEEEEESSHHHHHHHHHHH
T ss_pred             cchhhhhhhhccccccchhhHHhh
Confidence                45789999999999999887

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*

Probab=98.02  E-value=0.00022  Score=52.39  Aligned_cols=97  Identities=12%  Similarity=0.154  Sum_probs=68.2

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCC---------------CCCCcceEEeCCceEEeecCcccCC
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVT---------------RASKPRGVIPVASCLTVKGAEDVLN   89 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~---------------~~~~~~~~i~l~~~~~v~~~~~~~~   89 (143)
                      ...+++|.|..+.. .+.++.++++|..+.|.+.+....+               ......+.|++.++.. ....   .
T Consensus       251 R~li~~G~l~~~~~-~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v-~~~~---~  325 (368)
T 1xcg_A          251 RKMIHEGPLTWRIS-KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLI-RSVA---T  325 (368)
T ss_dssp             SCEEEEEEEEECCS-SSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEE-EECS---S
T ss_pred             ceEEeecceEeeec-CCCeeEEEEEcccccHHHhhcccccceeeeccccccCCCCcccCcCCceEccceee-eccc---C
Confidence            45789999986532 3567899999999999888754310               0011246788887643 3221   2


Q ss_pred             CcceEEEEeC-----CeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           90 KQYAFELSTR-----TETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        90 ~~~~f~i~~~-----~~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      .+..|.|...     ...|.|+|.|.++...|+.+|+.|+..
T Consensus       326 ~~~~f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~~  367 (368)
T 1xcg_A          326 DKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN  367 (368)
T ss_dssp             CSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            3567776653     378999999999999999999999864

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A

Probab=98.01  E-value=0.00017  Score=52.87  Aligned_cols=101  Identities=12%  Similarity=0.143  Sum_probs=69.9

Q ss_pred             cCCCceEEEEEEeCC---C--------CCCceeEEEEEECCeEEEEecCCCCC-------CCCcceEEeCCceEEeecCc
Q 032301           24 WSNPERSGWLTKQGE---Y--------IKTWRRRWFVLKQGKLFWFKESTVTR-------ASKPRGVIPVASCLTVKGAE   85 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~---~--------~~~w~~r~~vL~~~~l~~~~~~~~~~-------~~~~~~~i~l~~~~~v~~~~   85 (143)
                      .+..+++|.+.....   +        ....+.+++.|..+.|.+.+.....+       .-.....+++..+...+.. 
T Consensus       207 ~g~ll~~g~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~~y~~k~~i~l~~~~v~e~~-  285 (353)
T 1kz7_A          207 LGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENV-  285 (353)
T ss_dssp             GCCEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECCB-
T ss_pred             hhhhheecceEEEecCccccchhhhhhccCcceeEEEEECCEEEEEEeccccccCCCCCCeEEEEEEeEcccceeeEcC-
Confidence            345788999875311   1        12468899999999998887653110       0112456777776433322 


Q ss_pred             ccCCCcceEEEEeC--CeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301           86 DVLNKQYAFELSTR--TETMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus        86 ~~~~~~~~f~i~~~--~~~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                        .+.++.|.|...  ...+.|+|.|.++...|+.+|+.++...
T Consensus       286 --~~~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~  327 (353)
T 1kz7_A          286 --KGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQ  327 (353)
T ss_dssp             --TTBTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCCceEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence              134788999874  4789999999999999999999887653

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A

Probab=97.95  E-value=0.00027  Score=52.06  Aligned_cols=100  Identities=16%  Similarity=0.163  Sum_probs=68.1

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCC----C-----------CCCcceEEeCCceEEeecCcccCC
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVT----R-----------ASKPRGVIPVASCLTVKGAEDVLN   89 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~----~-----------~~~~~~~i~l~~~~~v~~~~~~~~   89 (143)
                      ...+++|.|..+.. .+.++.++++|-.+.|.+.+....+    .           .......++|.++..-+...   .
T Consensus       257 r~li~eG~l~~~~~-~~~~~~~~~fLF~d~Ll~~k~k~~k~~~k~~~~~~~~~~~~k~~~~~~i~l~~~~v~e~~~---~  332 (377)
T 3p6a_A          257 KKLVHEGPLTWRVT-KDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVAT---D  332 (377)
T ss_dssp             SCEEEEEEEEEESS-SSCEEEEEEEEESSEEEEEEEETTEEECCCCCCC---------CSCSEEEGGGEEEEECTT---C
T ss_pred             ceEEEECCcEEEec-CCCeEEEEEEeeCCEEEEEEEcCceeEEeecccccccCccccCCCCCeEechhhhcccccc---c
Confidence            35689999977643 3478999999999999888754310    0           00113468888764333211   2


Q ss_pred             CcceEEEEe---CCeEEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301           90 KQYAFELST---RTETMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus        90 ~~~~f~i~~---~~~~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                      ....|.+..   +...|.|.|.|.++.+.|+.+|+.|+....
T Consensus       333 ~~~~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~~~k  374 (377)
T 3p6a_A          333 HKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSLK  374 (377)
T ss_dssp             TTEEEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHHTCC
T ss_pred             cceeEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhcC
Confidence            344555554   236788999999999999999999998554

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=97.89  E-value=0.00016  Score=60.12  Aligned_cols=96  Identities=19%  Similarity=0.263  Sum_probs=72.1

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCC--------CCCCcceEEeCCceEEeecCcccCCCcceEEE
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVT--------RASKPRGVIPVASCLTVKGAEDVLNKQYAFEL   96 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~--------~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i   96 (143)
                      ...+++|.|.+.+..    +.+++.|..+.|.+.+.....        ..-.....+++.++. +...++....++.|.|
T Consensus       442 r~Li~eG~l~~~~~k----~~r~~FLF~D~Ll~~K~~~~~~~~~g~~~~~y~~k~~i~L~~l~-V~~~~d~~~~~~~F~I  516 (1049)
T 3ksy_A          442 NEFIMEGTLTRVGAK----HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQ-INDKDDTNEYKHAFEI  516 (1049)
T ss_dssp             SCCCCEEEEEETTCS----SCEEEEEETTEEEEEECCTTCCCCTTSCCCSCCCCCEECCSSCC-CCCCCCSSSCCSEEEE
T ss_pred             ceEEEeceEEEEccC----ceEEEEeeCCeEEEEEecCccCCCCCCCCCceEEEEEEEcCceE-EEECCCCccccceEEE
Confidence            457899999877532    889999999999998866421        012356788888864 4333333356899999


Q ss_pred             EeCC-eEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301           97 STRT-ETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus        97 ~~~~-~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                      .... ..+.|+|.|.++...|+.+|+.+..
T Consensus       517 ~~~~~~~~~L~A~S~eeK~~Wi~~I~~~q~  546 (1049)
T 3ksy_A          517 ILKDENSVIFSAKSAEEKNNWMAALISLQY  546 (1049)
T ss_dssp             CCTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EcCCCCEEEEeCCCHHHHHHHHHHHHHHHH
Confidence            8876 5899999999999999999987654

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A

Probab=97.87  E-value=0.00024  Score=55.00  Aligned_cols=101  Identities=16%  Similarity=0.155  Sum_probs=66.4

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCC----C-----------CCCcceEEeCCceEEeecCcccCC
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVT----R-----------ASKPRGVIPVASCLTVKGAEDVLN   89 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~----~-----------~~~~~~~i~l~~~~~v~~~~~~~~   89 (143)
                      ...+++|.|..+.. .+.++.++++|..+.|.+.+.....    .           .......|+|.++.+-+...   .
T Consensus       410 R~LI~eG~l~~~~~-~~k~~~r~~fLF~D~LL~~k~k~~ky~~k~~~~~~~~~~d~k~~~~~~i~L~~l~v~e~~~---d  485 (536)
T 3odw_A          410 KKLVHEGPLTWRVT-KDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVAT---D  485 (536)
T ss_dssp             SCEEEEEEEEEESC-C---CEEEEEEESSEEEEEEEETTEEECCCC------------CCCSEEEGGGEEEEECTT---C
T ss_pred             ceeeeecceEEEec-CCCeeEEEEEEcCCEEEEEEEcCCeEEEeecccccccccccccccCceeecccceeecccc---c
Confidence            35789999987753 3467899999999999888754310    0           00123468888864433221   2


Q ss_pred             CcceEEEEe---CCeEEEEEcCCHHHHHHHHHHHHHHHHhhCC
Q 032301           90 KQYAFELST---RTETMYFIADSEKEKEDWINSIGRSIVQHSR  129 (143)
Q Consensus        90 ~~~~f~i~~---~~~~~~~~a~s~~e~~~W~~al~~~~~~~~~  129 (143)
                      ....|.|..   ....|.|.|.|.++.+.|+.+|+.|+.....
T Consensus       486 ~~~ffli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~~~~~  528 (536)
T 3odw_A          486 HKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSLKV  528 (536)
T ss_dssp             TTEEEEEEC---CCCEEEEECSSHHHHHHHHHHHHHHHHTSCC
T ss_pred             CCceEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence            233444443   3478999999999999999999999986543

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A

Probab=97.84  E-value=0.00018  Score=52.46  Aligned_cols=94  Identities=19%  Similarity=0.139  Sum_probs=64.8

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCC---CCcceEEeCCceEEeecCccc--------------C
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRA---SKPRGVIPVASCLTVKGAEDV--------------L   88 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~---~~~~~~i~l~~~~~v~~~~~~--------------~   88 (143)
                      ..+++|.|.+.+     -+.++++|..+.|.+.+.......   ......|++..+...+..+..              .
T Consensus       231 ~li~~G~l~~~~-----~~~~~~fLF~d~Ll~~k~~~~~~~~~~~v~k~~i~l~~l~v~~~~d~~~~~~~s~~g~~~~~~  305 (346)
T 2z0q_A          231 VLCCHGELKNNR-----GVKLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDGEVRLGGSLRGAFSNNE  305 (346)
T ss_dssp             CEEEEEEEEETT-----SCEEEEEEESSEEEEEEEEEETTEEEEEESSCCEEGGGCEEEECCTTTSCCCSCC--CCSHHH
T ss_pred             EEEEeceeEECC-----CcEEEEEECCCcEEEEEEeccCCceeeeeecCCcchhhceeeecCCCccccCccccccccCCc
Confidence            457899987642     178899999999988876431100   012356788876443322210              1


Q ss_pred             CCcceEEEEeC----CeEEEEEcCCHHHHHHHHHHHHHHH
Q 032301           89 NKQYAFELSTR----TETMYFIADSEKEKEDWINSIGRSI  124 (143)
Q Consensus        89 ~~~~~f~i~~~----~~~~~~~a~s~~e~~~W~~al~~~~  124 (143)
                      ..++.|.|...    ...+.|+|.|.++...|+.+|+.|+
T Consensus       306 ~~~~~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai  345 (346)
T 2z0q_A          306 RVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK  345 (346)
T ss_dssp             HTSSEEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ccccceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence            23688999853    5789999999999999999999886

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}

Probab=97.81  E-value=0.00061  Score=49.97  Aligned_cols=99  Identities=11%  Similarity=0.079  Sum_probs=67.8

Q ss_pred             CCCceEEEEEEeCC-----CCCCceeEEEEEECCeEEEEecCCCC------CCCCcceEEeCCceEEeecCcccCCCcce
Q 032301           25 SNPERSGWLTKQGE-----YIKTWRRRWFVLKQGKLFWFKESTVT------RASKPRGVIPVASCLTVKGAEDVLNKQYA   93 (143)
Q Consensus        25 ~~~~~~G~L~k~~~-----~~~~w~~r~~vL~~~~l~~~~~~~~~------~~~~~~~~i~l~~~~~v~~~~~~~~~~~~   93 (143)
                      +..+.+|.+....+     ..+..+.++++|..+.|.+.+.....      ..-.....+++..+...+..+   +.++.
T Consensus       205 ~~Ll~~g~~~v~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~~---~~~~~  281 (354)
T 2rgn_B          205 GKLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSEALGGGVRGGTQPGYVYKNSIKVSCLGLEGNLQ---GDPCR  281 (354)
T ss_dssp             CCEEEEEEEEEECC-------CCCCEEEEEEESSEEEEEEECC--------CCEEEEEEEEGGGEEEEESGG---GCTTE
T ss_pred             ccccccceEEEEcCCcCccccCCCceEEEEEeCCcEEEEEeccCCCCCCCCCceEEcceeeccceeeeeccC---CCCce
Confidence            45677887765432     12467899999999999888765410      011234567888764333221   34688


Q ss_pred             EEEEeC-----CeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           94 FELSTR-----TETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        94 f~i~~~-----~~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      |.|...     ...+.|+|.|.++...|+.+|+.++..
T Consensus       282 F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~  319 (354)
T 2rgn_B          282 FALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILES  319 (354)
T ss_dssp             EEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            998863     367999999999999999999998864

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A

Probab=97.80  E-value=0.00068  Score=50.18  Aligned_cols=100  Identities=16%  Similarity=0.141  Sum_probs=68.3

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCC---------------CCCCcceEEeCCceEEeecCcccCC
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVT---------------RASKPRGVIPVASCLTVKGAEDVLN   89 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~---------------~~~~~~~~i~l~~~~~v~~~~~~~~   89 (143)
                      ...+++|.|..+.. .+..+.++++|..+.|.+.+.....               ......+.+++.++.+.+...   .
T Consensus       255 R~li~eG~l~~~~~-~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~---d  330 (385)
T 1txd_A          255 RKMIHEGPLVWKVN-RDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVAT---D  330 (385)
T ss_dssp             SCEEEEEEEEEESS-SSCBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEECCC----
T ss_pred             ceEEEECcEEEEcC-CCCeEEEEEEecCCeeEEEEecCCeeEEeeccccccccCCCCcCCCCceeccccccccccc---C
Confidence            45689999986642 2467899999999999887754310               001124678888764333221   2


Q ss_pred             CcceEEEEeC---CeEEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301           90 KQYAFELSTR---TETMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus        90 ~~~~f~i~~~---~~~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                      .+..|.|...   ...|.|+|.|.++...|+.+|+.++....
T Consensus       331 ~~~~f~i~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~~~~  372 (385)
T 1txd_A          331 NKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASVK  372 (385)
T ss_dssp             CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEEcCCCceEEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence            2456666643   37799999999999999999999988654

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=97.79  E-value=3e-06  Score=64.89  Aligned_cols=98  Identities=19%  Similarity=0.121  Sum_probs=0.0

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCC---CC-------------CCcceEEeCCceEEeecCcccCC
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVT---RA-------------SKPRGVIPVASCLTVKGAEDVLN   89 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~---~~-------------~~~~~~i~l~~~~~v~~~~~~~~   89 (143)
                      ..+++|.|.+.    +.++.++++|..+.|.+.+.....   ..             ......|++.++. +....+...
T Consensus       252 ~li~eG~l~~~----~~~~~~~~fLF~d~Ll~~k~~~~~~~~~g~~~~f~~~~~~~~~v~k~~i~l~~~~-v~~~~d~~~  326 (510)
T 3jzy_A          252 KLLHSGKLYKT----KSNKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVL-VKLPTDPSS  326 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeEEeceEEEc----CCCcEEEEEcccceeEEeeecccccccCCcccccCcccccceeEEcCceehhheE-EeccCCCCc
Confidence            45677877654    346799999999998888744311   00             0113456666653 333333335


Q ss_pred             CcceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301           90 KQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus        90 ~~~~f~i~~~~~~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                      .+++|.|..+.+++.|+|.|.++...|+.+|+.++....
T Consensus       327 ~~~~F~i~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~  365 (510)
T 3jzy_A          327 DEPVFHISHIDRVYTLRTDNINERTAWVQKIKAASEQYI  365 (510)
T ss_dssp             ---------------------------------------
T ss_pred             cccceeeeccceeEEeccCCHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999988653

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=97.70  E-value=0.0013  Score=52.35  Aligned_cols=95  Identities=20%  Similarity=0.486  Sum_probs=68.7

Q ss_pred             CCCceEEEEEEeCC-CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC-eE
Q 032301           25 SNPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT-ET  102 (143)
Q Consensus        25 ~~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~-~~  102 (143)
                      .++++.|++.+.++ ....|++|++.|..+.+.+.....     .+...+.+.....+....  ....++|.+...+ +.
T Consensus       557 ~~~i~~G~~~k~~g~f~~~~~rR~~~l~p~r~e~~~e~~-----~~~~l~~~~~v~~v~k~~--i~~~~~l~~~~k~~k~  629 (689)
T 3v5w_A          557 KDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEGE-----APQSLLTMEEIQSVEETQ--IKERKCLLLKIRGGKQ  629 (689)
T ss_dssp             SCCCEEEEEEEC-------CEEEEEEEETTEEEEECTTS-----CCCEEEEGGGEEEEEEEE--SSSCEEEEEEETTTEE
T ss_pred             CcceeecccccCCCcccchhhhhccccCCCcccccccCC-----CCcceeeeccccccccCc--CCCCcceeeeecCCcE
Confidence            56899999999876 446899999999999988775433     355667777755553322  2456788888766 78


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHHh
Q 032301          103 MYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus       103 ~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      +++.+.|..++.+|+.+|+.+-..
T Consensus       630 f~~~t~~~~~~~~W~~~i~~~~~~  653 (689)
T 3v5w_A          630 FILQCDSDPELVQWKKELRDAYRE  653 (689)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHHHHHHHHH
Confidence            899999999999999999876543

>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1

Probab=97.39  E-value=0.0076  Score=44.39  Aligned_cols=103  Identities=9%  Similarity=0.050  Sum_probs=63.4

Q ss_pred             CCCceEEEEEEeCC-----CCCCceeEEEEEECCeEEE-EecCCCC----------------CCCCcceEEeCCceEEee
Q 032301           25 SNPERSGWLTKQGE-----YIKTWRRRWFVLKQGKLFW-FKESTVT----------------RASKPRGVIPVASCLTVK   82 (143)
Q Consensus        25 ~~~~~~G~L~k~~~-----~~~~w~~r~~vL~~~~l~~-~~~~~~~----------------~~~~~~~~i~l~~~~~v~   82 (143)
                      +..+..|.+.....     ..+.-+.+++.|..+.|.+ .+.....                ..-.-...++|..+.+.+
T Consensus       236 g~ll~~~~~~~~~~~~~~~~~~k~~~~~~fLF~d~lll~~k~~~~~k~~~~~~~~~s~~~~~~~y~~k~~i~l~~~~v~~  315 (377)
T 1foe_A          236 GDLLLHTSVIWLNPPASLGKWKKEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRA  315 (377)
T ss_dssp             GGEEEEEEEEESSCCHHHHTTCSSCEEEEEEETTEEEEEECCCCCSCCSSCCCTTTTCSSCSCSCCCEEEEEGGGEEEEC
T ss_pred             cceeeecceeeccCchhhccccccceEEEEEcCCeEEEEeccccccccccccccccccccCCCceeEeeeccccceEEEe
Confidence            34567777754321     1134467888888887655 4432100                011234678888864433


Q ss_pred             cCcccCCC-cceEEEE--------eCCeEEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301           83 GAEDVLNK-QYAFELS--------TRTETMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus        83 ~~~~~~~~-~~~f~i~--------~~~~~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                       .++.... ...|.|.        .+.+.+.|+|.|.++...|+.+|+.++....
T Consensus       316 -~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i~~~~  369 (377)
T 1foe_A          316 -LPSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSILRDKH  369 (377)
T ss_dssp             -CCCTTTTSCCEEEEEECCBTGGGBCCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             -cCCCccchhhHHHHHhccccccCCCcceEEEEeCCHHHHHHHHHHHHHHhhHHh
Confidence             3322222 2347775        2357899999999999999999999987543

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=97.21  E-value=0.0025  Score=44.98  Aligned_cols=55  Identities=11%  Similarity=0.226  Sum_probs=42.9

Q ss_pred             eEEeCCceEEeecCcccCCCcceEEEEeCC--eEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301           71 GVIPVASCLTVKGAEDVLNKQYAFELSTRT--ETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus        71 ~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~--~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                      ..++|.-|...........+.++|.|..++  .+.+|.|.|..++.+|+.+|+.++.
T Consensus       206 ~~ipL~m~~~tR~~~~~d~~~~~fev~s~dG~~t~~l~~~d~~~a~~W~~ai~~~i~  262 (263)
T 1z87_A          206 KHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG  262 (263)
T ss_dssp             EEEESSSEEEEEECCSSCSSSCEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             cccCcceeeeeeeccccCCCCceEEEECCCCCeeEEEEECCHHHHHHHHHHHHHHhc
Confidence            456677655544443344588999999986  6789999999999999999998874

>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1

Probab=97.03  E-value=0.0046  Score=40.93  Aligned_cols=55  Identities=11%  Similarity=0.226  Sum_probs=43.2

Q ss_pred             eEEeCCceEEeecCcccCCCcceEEEEeCC--eEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301           71 GVIPVASCLTVKGAEDVLNKQYAFELSTRT--ETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus        71 ~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~--~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                      .+|+|.=|...........+...|+|..++  .+.+|.|.|..++..|+.+|+..+.
T Consensus       121 ~~IPLkMayvtR~~~~tD~e~r~fEv~s~DG~~t~iLrc~D~a~a~~Wf~aI~sni~  177 (178)
T 2adz_A          121 KHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG  177 (178)
T ss_dssp             EEEETTTCEEEEECCSSCCSSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred             eeecHHHHHHHHhccCCCCCccEEEEEcCCCCeeEEEEeCCHHHHHHHHHHHHHhcc
Confidence            567777665554444344578899999987  6789999999999999999988764

>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1

Probab=96.36  E-value=0.049  Score=33.69  Aligned_cols=98  Identities=8%  Similarity=0.081  Sum_probs=67.2

Q ss_pred             cCCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCC--CCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC-
Q 032301           24 WSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTV--TRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT-  100 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~--~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~-  100 (143)
                      .+..++.|++..-.+. +.-+.|++.|-...+.+.+....  ...-.-...|.++.+...+...+  +.+..|.|-.+. 
T Consensus         7 ~G~Ll~q~~f~V~~~~-~k~~eR~vFLFe~~ilf~K~~~~~~~~~Y~~K~~ikl~~~~lte~~~~--~d~~kFeiw~~~~   83 (119)
T 1fho_A            7 LGRIIRHDAFQVWEGD-EPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQHTTD--EDTIVLQPQEPGL   83 (119)
T ss_dssp             CCCSSEEEEEEECSTT-CSCEEEEEEEETTEEEEEEECCSSSSCCCSSCCEEESSSCEEEEECTT--CCEEEEECCSTTC
T ss_pred             cCCccccCceEEEeCC-CCcceEEEEEecCcEEEEEEecCCCCCcEEEeeEEeeceeEEEecCCC--CCCcEEEEccCCC
Confidence            4567889998876543 45688999999999999986621  00223456788887643332221  335668886655 


Q ss_pred             -eEEEE--EcCCHH-HHHHHHHHHHHHH
Q 032301          101 -ETMYF--IADSEK-EKEDWINSIGRSI  124 (143)
Q Consensus       101 -~~~~~--~a~s~~-e~~~W~~al~~~~  124 (143)
                       ..+.+  +|.|.+ ..+.|+..|+.+.
T Consensus        84 ~~~~il~~qA~s~e~~K~~Wv~~I~~~~  111 (119)
T 1fho_A           84 PSFRIKPKDFETSEYVRKAWLRDIAEEQ  111 (119)
T ss_dssp             CCBCCCCCSSSSCSHHHHHHHHHHHTCC
T ss_pred             CceEEEeeecCCcHHHHHHHHHHHHHHH
Confidence             45667  899999 9999999998743

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=92.78  E-value=2.4  Score=34.56  Aligned_cols=95  Identities=9%  Similarity=0.063  Sum_probs=58.7

Q ss_pred             ceEEEEE-EeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCccc--------------CC---
Q 032301           28 ERSGWLT-KQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDV--------------LN---   89 (143)
Q Consensus        28 ~~~G~L~-k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~--------------~~---   89 (143)
                      ...|-.. |-+...+..+.+.|.|..+...+|-..+.   ......+.|..+..+......              .+   
T Consensus        22 L~~G~~~~K~~~~s~~~~~~~f~lD~d~~~L~W~~~~---k~~~~~l~I~~I~eVR~G~~t~~pk~~klr~~~~~~g~~~   98 (816)
T 3qr0_A           22 LIKGDKFLKWEEGSSGFIEILLRVDPKGYFLYWKIEG---KEDTQLLDLAYVRDIRCAKYAKPPKDKKIKEAGTNFGSSN   98 (816)
T ss_dssp             HHHCEEEEEECTTCCCCEEEEEEECTTSCEEEECCTT---CSSCEEEEGGGEEEEEEGGGSCCCCSHHHHHHHHHSSCTT
T ss_pred             HhCCCeEEEECCCCCcceeEEEEEcCCCCEEEEeCCC---CCcCcEEEeeeeeeeecCCcCCCCccHHHHHHHHhcCCCc
Confidence            4455544 43433333467888887655444433321   111267888876666543321              01   


Q ss_pred             ---CcceEEEEeCC-----eEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301           90 ---KQYAFELSTRT-----ETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus        90 ---~~~~f~i~~~~-----~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                         ...+|.|+...     ..+.|.|.+.++++.|+..|+..+.
T Consensus        99 ~~~e~r~fTIvyg~~~~nL~~l~LvA~s~e~A~~W~~gL~~L~~  142 (816)
T 3qr0_A           99 IPLQDKCVTICHGYNYIDLEWTHLVAENSSVAKKWSEEVFSYAY  142 (816)
T ss_dssp             SCHHHHEEEEEECSSSSSCEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             ccccccEEEEEECCCcccceEEEEeeCCHHHHHHHHHHHHHHHH
Confidence               24689999865     3458999999999999999988765

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=89.72  E-value=7.2  Score=31.76  Aligned_cols=92  Identities=10%  Similarity=0.058  Sum_probs=57.2

Q ss_pred             ceEEEEEEeCCCCCCc--eeEEEEEECC--eEEEEecCCCCCCCCcceEEeCCceEEeecCccc----------------
Q 032301           28 ERSGWLTKQGEYIKTW--RRRWFVLKQG--KLFWFKESTVTRASKPRGVIPVASCLTVKGAEDV----------------   87 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w--~~r~~vL~~~--~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~----------------   87 (143)
                      +..|....+-. .+.|  +.++|.|..+  .|.|.....      ....+.|..+..+......                
T Consensus        17 L~~Gt~~~K~~-~~~~~~k~~~frLd~d~~~l~W~~~~k------~~~~l~I~~IkeIR~G~~s~~pk~~~~~e~~~~~~   89 (799)
T 2zkm_X           17 LSQGERFIKWD-DETTVASPVILRVDPKGYYLYWTYQSK------EMEFLDITSIRDTRFGKFAKMPKSQKLRDVFNMDF   89 (799)
T ss_dssp             HHHCEEEEEEC-TTTCCEEEEEEEECTTSCEEEEEETTS------CEEEEEGGGEEEEEEGGGSCCCCSHHHHHHTTCSS
T ss_pred             HhCCCEEEEEc-CCCcceeEEEEEEcCCCCEEEEccCCC------cCceEeeeeeHHhhcCCCCCCCchHHHHHHhcccC
Confidence            34555544421 2344  5677788644  445543221      2457888776666532111                


Q ss_pred             ---CCCcceEEEEeCC-----eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           88 ---LNKQYAFELSTRT-----ETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        88 ---~~~~~~f~i~~~~-----~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                         .....+|.|+...     ..+.|.|.+.++++.|+..|+..+..
T Consensus        90 ~~~~~e~~~fTIvyg~~~~~l~~L~lvA~s~~ea~~Wv~GL~~L~~~  136 (799)
T 2zkm_X           90 PDNSFLLKTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALVKH  136 (799)
T ss_dssp             TTCCGGGTEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHHHC
T ss_pred             cccccccceEEEEECCCccceeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence               0124689999865     35889999999999999999988764

>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A

Probab=88.65  E-value=2.9  Score=25.70  Aligned_cols=81  Identities=12%  Similarity=0.170  Sum_probs=55.9

Q ss_pred             eeEEEEEECCeEEEEecCCCCC--CCCcceEEeCCceEEeecCcccCCCcceEEEEeC------CeEEEEEcCCHHHHHH
Q 032301           44 RRRWFVLKQGKLFWFKESTVTR--ASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTR------TETMYFIADSEKEKED  115 (143)
Q Consensus        44 ~~r~~vL~~~~l~~~~~~~~~~--~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~------~~~~~~~a~s~~e~~~  115 (143)
                      ..|-+++.|+.+.+...+....  ......++.++.+..+...   .+.+..|.|.--      .+.|.|-|.|..++.+
T Consensus        28 ~ER~L~IDGdYIHImP~~~~~~~~~~~KTtS~H~s~Vv~~K~s---~k~P~~FKivV~k~~~~e~KrYdfEA~s~~ea~E  104 (121)
T 3ulb_A           28 HERTLAIDGDYIYIVPPEGRIHWHDNVKTKSLHISQVVLVKKS---KRVPEHFKIFVRREGQDDIKRYYFEAVSGQECTE  104 (121)
T ss_dssp             EEEEEEEETTEEEEECCC-------CCCCEEEEGGGEEEEEEC---SSCTTEEEEEECCTTCSSCEEEEEEESSHHHHHH
T ss_pred             ccEEEEEcCceEEEecCCCCcccccCCcEEEEEEeeEEEEEec---ccCCCcEEEEEEccCCCCcceeEEEeCCHHHHHH
Confidence            5667788899998887654211  1234567777775444332   255778887742      2789999999999999


Q ss_pred             HHHHHHHHHHhh
Q 032301          116 WINSIGRSIVQH  127 (143)
Q Consensus       116 W~~al~~~~~~~  127 (143)
                      -+..|+..+..+
T Consensus       105 IV~~ik~~~~~Y  116 (121)
T 3ulb_A          105 IVTRLQNLLSAY  116 (121)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999888754

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=88.04  E-value=6.6  Score=32.42  Aligned_cols=96  Identities=8%  Similarity=0.085  Sum_probs=57.0

Q ss_pred             CceEEEEEEe-CCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcc-------------------
Q 032301           27 PERSGWLTKQ-GEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAED-------------------   86 (143)
Q Consensus        27 ~~~~G~L~k~-~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~-------------------   86 (143)
                      .+..|....+ +.....-+.++|.|..+...+|-...   . .....+.|..+..+.....                   
T Consensus        20 ~L~~Gt~f~K~~~~~~~~k~~~frLD~d~~~L~W~~~---~-ke~~~l~Is~IkeIR~G~~a~~pKd~klr~~~~~~~~~   95 (885)
T 3ohm_B           20 TLRRGSKFIKWDEETSSRNLVTLRVDPNGFFLYWTGP---N-MEVDTLDISSIRDTRTGRYARLPKDPKIREVLGFGGPD   95 (885)
T ss_dssp             HHHHCEEEEEECTTCCSCCEEEEEECTTSCEEEEECG---G-GCEEEEEGGGEEEEEETTTSCCCCSHHHHHCC------
T ss_pred             HHhCCCeEEEECCCCCCcEEEEEEECCCCCEEEEeCC---C-CCCceEeeehhhhhhcCcCCCCCccHHHHHHhccCccc
Confidence            3455655544 43322346677778654333322222   1 1235677776555543321                   


Q ss_pred             cCCCcceEEEEeCC-----eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           87 VLNKQYAFELSTRT-----ETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        87 ~~~~~~~f~i~~~~-----~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      ......+|.|+...     ..+.|.|.+.++++.|+..|+..+..
T Consensus        96 ~~~e~r~fTIvyg~d~~n~~~LdLVA~s~e~a~~W~~gL~~L~~~  140 (885)
T 3ohm_B           96 ARLEEKLMTVVSGPDPVNTVFLNFMAVQDDTAKVWSEELFKLAMN  140 (885)
T ss_dssp             ---CTTEEEEEECSSGGGCEEEEEEESSSSHHHHHHHHHHHHHHC
T ss_pred             CcccccEEEEEECCCCccceEEEEEeCChHHHHHHHHHHHHHHhh
Confidence            01225689999865     35899999999999999999887663

>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer, domain swapping, phosphate-binding, coiled coil, exocytosis; 2.00A {Saccharomyces cerevisiae}

Probab=86.09  E-value=5.3  Score=26.09  Aligned_cols=85  Identities=16%  Similarity=0.206  Sum_probs=60.6

Q ss_pred             CCceeEEEEEE-----CCeEEEEecCCCCCCC-CcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEEEEcCCHHHHH
Q 032301           41 KTWRRRWFVLK-----QGKLFWFKESTVTRAS-KPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKE  114 (143)
Q Consensus        41 ~~w~~r~~vL~-----~~~l~~~~~~~~~~~~-~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~a~s~~e~~  114 (143)
                      ..=|.|+.+|.     ...+.+++........ ....+-+|.....|+...   .....|.|.. ++.|+..|.+..|..
T Consensus        62 ~~KK~R~L~lav~~~~sgrV~lhK~K~N~ngsfsiGkTW~L~ELk~Ie~~~---~~~~gF~ltl-~K~Y~W~a~s~~Er~  137 (171)
T 3hie_A           62 ENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEKDL---EISEGFILTM-SKKYYWETNSAKERT  137 (171)
T ss_dssp             GGEEEEEEEEEECTTCTTCEEEEEEEECTTSCEEEEEEEEGGGCCEEEECS---SCTTEEEEES-SSEEEEECSSHHHHH
T ss_pred             CCccceEEEEEEecCCCceEEEEEEEECCCCcEEeeeeeecccceeeeccC---CCCCcEEEEe-CCeEEEecCCHHHHH
Confidence            34688888884     3356777766532221 234566777766665532   2467888887 699999999999999


Q ss_pred             HHHHHHHHHHHhhCC
Q 032301          115 DWINSIGRSIVQHSR  129 (143)
Q Consensus       115 ~W~~al~~~~~~~~~  129 (143)
                      ..+.+|-+...++..
T Consensus       138 ~FI~sL~K~y~ky~~  152 (171)
T 3hie_A          138 VFIKSLITLYIQTFE  152 (171)
T ss_dssp             HHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999998887764

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae}

Probab=82.92  E-value=11  Score=27.02  Aligned_cols=85  Identities=18%  Similarity=0.233  Sum_probs=59.5

Q ss_pred             CCceeEEEEEE-----CCeEEEEecCCCCCCC-CcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEEEEcCCHHHHH
Q 032301           41 KTWRRRWFVLK-----QGKLFWFKESTVTRAS-KPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKE  114 (143)
Q Consensus        41 ~~w~~r~~vL~-----~~~l~~~~~~~~~~~~-~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~a~s~~e~~  114 (143)
                      +.=|.|+.+|.     ...+.+++..+..... ....+.+|.....|+..   ......|.|.. ++.||..|.+..|..
T Consensus       132 kkKK~R~LcLaV~~d~sGRV~LhKaKeN~ngsFsIGKTW~L~ELk~Id~~---~~~~~gF~LTl-~K~YyW~A~s~kER~  207 (320)
T 3a58_A          132 ENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEKD---LEISEGFILTM-SKKYYWETNSAKERT  207 (320)
T ss_dssp             GGEEEEEEEEEECSSCTTCEEEEEEEECGGGCEEEEEEEEGGGCCEEEEC---SSCTTEEEEES-SSEEEEEESSHHHHH
T ss_pred             cccCceEEEEEEecCCCceEEEEEEEecCCCceEecceechhhhhhhhcc---cCCCCceEEEe-CCceEEecCCHHHHH
Confidence            45688888875     2347777765532111 23456667776556521   13347888887 899999999999999


Q ss_pred             HHHHHHHHHHHhhCC
Q 032301          115 DWINSIGRSIVQHSR  129 (143)
Q Consensus       115 ~W~~al~~~~~~~~~  129 (143)
                      .++..|-+...++..
T Consensus       208 ~FI~sLvKiy~KYtg  222 (320)
T 3a58_A          208 VFIKSLITLYIQTFE  222 (320)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999998887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d1faoa_	100	b.55.1.1 (A:) Dual adaptor of phosphotyrosine and	5e-22
d1fgya_	127	b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 1	1e-21
d1eaza_	103	b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId:	7e-21
d1plsa_	113	b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [Ta	6e-20
d1x1ga1	116	b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapie	5e-17
d1v89a_	118	b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KI	8e-17
d1u5ea1	209	b.55.1.1 (A:14-222) Src-associated adaptor protein	2e-15
d1v88a_	130	b.55.1.1 (A:) Oxysterol binding protein-related pr	2e-14
d1wi1a_	126	b.55.1.1 (A:) Calcium-dependent activator protein	3e-14
d2i5fa1	104	b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapie	5e-14
d1unqa_	118	b.55.1.1 (A:) Rac-alpha serine/threonine kinase {H	5e-14
d1u5da1	106	b.55.1.1 (A:108-213) Src kinase-associated phospho	6e-14
d1btka_	169	b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Hom	7e-14
d1v5ua_	117	b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (M	1e-13
d1upqa_	107	b.55.1.1 (A:) Phosphoinositol 3-phosphate binding	3e-13
d2coca1	99	b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain cont	7e-13
d2coda1	102	b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo	9e-13
d1wgqa_	109	b.55.1.1 (A:) FYVE, RhoGEF and PH domain containin	2e-12
d1droa_	122	b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila	4e-12
d2elba2	101	b.55.1.1 (A:274-374) DCC-interacting protein 13-al	1e-11
d2j59m1	133	b.55.1.1 (M:931-1063) Rho GTPase-activating protei	1e-11
d1u5fa1	111	b.55.1.1 (A:109-219) Src-associated adaptor protei	1e-11
d1qqga1	103	b.55.1.2 (A:12-114) Insulin receptor substrate 1,	2e-11
d1w1ha_	147	b.55.1.1 (A:) 3-phosphoinositide dependent protein	3e-11
d1x1fa1	136	b.55.1.1 (A:8-143) Signal-transducing adaptor prot	5e-11
d2dyna_	111	b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId	7e-11
d2fjla1	101	b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phosph	2e-10
d2cofa1	95	b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens)	5e-10
d1v5pa_	126	b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId:	6e-10
d1v5ma_	136	b.55.1.1 (A:) SH2 and PH domain-containing adapter	6e-10
d2coaa1	112	b.55.1.1 (A:8-119) Protein kinase c, d2 type {Huma	7e-10
d1v61a_	132	b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (M	7e-10
d1btna_	106	b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus),	3e-09
d1wjma_	123	b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens),	9e-09
d1omwa2	119	b.55.1.1 (A:550-668) G-protein coupled receptor ki	1e-08
d1wg7a_	150	b.55.1.1 (A:) Dedicator of cytokinesis protein 9,	2e-07
d1maia_	119	b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus	2e-05
d2dfka2	162	b.55.1.1 (A:240-401) Rho guanine nucleotide exchan	6e-05
d1zc3b1	109	b.55.1.1 (B:171-279) Exocyst complex protein EXO84	2e-04

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (202), Expect = 5e-22
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 4/102 (3%)

Query: 25  SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA 84
           S   + G+LTKQG  +KTW+ RWF L + +L +FK+       +P  ++ +  C  V+  
Sbjct: 2   SLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSP---EPIRILDLTECSAVQFD 58

Query: 85  EDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQ 126
                +   F L     T Y  A +  E ++WI  +   + Q
Sbjct: 59  YSQ-ERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQ 99

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.9 bits (201), Expect = 1e-21
 Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 27/126 (21%)

Query: 25  SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA 84
            NP+R GWL K G  +KTW+RRWF+L    L++F+ +T     +PRG+IP+ +    +  
Sbjct: 3   FNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTD---KEPRGIIPLENLSIREVL 59

Query: 85  EDVLNKQYAFELSTRTE----------------------TMYFIADSEKEKEDWINSIGR 122
           +    K   FEL   +                            A S +EKE+W+ SI  
Sbjct: 60  DP--RKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKA 117

Query: 123 SIVQHS 128
           SI +  
Sbjct: 118 SISRDP 123

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (194), Expect = 7e-21
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 5/101 (4%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE--D 86
           ++G+  KQG  +K W+RR+F L +  + +FK        +P  VIP+     V+  +  D
Sbjct: 5   KAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEK---EPLRVIPLKEVHKVQECKQSD 61

Query: 87  VLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQH 127
           ++ +   FE+ T + T Y  ADS +E   WI ++  +IV  
Sbjct: 62  IMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQ 102

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (189), Expect = 6e-20
 Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 4/97 (4%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL 88
           R G+L K+G    TW+  W VL +  + ++K+ +      P+G+IP+         +D  
Sbjct: 7   REGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDN---SPKGMIPLKGSTLTSPCQDFG 63

Query: 89  NKQYAFE-LSTRTETMYFIADSEKEKEDWINSIGRSI 124
            + + F+  +T+ +  +F A   +E++ W+  I ++I
Sbjct: 64  KRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAI 100

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 5e-17
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 8/110 (7%)

Query: 19  DSTEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASC 78
            + E      + G+L KQG   K W+ R FVL++   F          ++P G   +   
Sbjct: 3   STVELSGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGS 62

Query: 79  LTVKGAEDVLN--------KQYAFELSTRTETMYFIADSEKEKEDWINSI 120
           L     ++ +               ++      Y  A S+ E+ +WI +I
Sbjct: 63  LVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAI 112

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (168), Expect = 8e-17
 Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 12/109 (11%)

Query: 25  SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA 84
           S P + GWL KQ   +K W++R+FVL+  +L+++K+   T   KP+G + +  C   + A
Sbjct: 6   SGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDT---KPQGCMYLPGCTIKEIA 62

Query: 85  E-DVLNKQYAFEL--------STRTETMYFIADSEKEKEDWINSIGRSI 124
                  ++ FE+            ++   +A S+ E E+W+  + R  
Sbjct: 63  TNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVA 111

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.7 bits (164), Expect = 2e-15
 Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 10/107 (9%)

Query: 25  SNPERSGWLTKQGE----YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLT 80
               ++G+L K+ +        W++RW  L +   +++         + +G   +     
Sbjct: 102 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDK---QQKGEFAIDGYDV 158

Query: 81  VKGAEDVL--NKQYAFELSTRTE-TMYFIADSEKEKEDWINSIGRSI 124
                      K   FE+    +    F A S K+ E+W+  +   +
Sbjct: 159 RMNNTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL 205

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 2e-14
 Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 30/124 (24%)

Query: 25  SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA 84
           S    + WL  +G  +K+W + W VLK G L  +K        +  G + + +C  ++  
Sbjct: 6   SGIVMADWLKIRGT-LKSWTKLWCVLKPGVLLIYKTQKN---GQWVGTVLLNACEIIERP 61

Query: 85  EDVLNKQYAFEL------------------------STRTETMYFIADSEKEKEDWINSI 120
                  + F+L                           +  +   A SE +   W++++
Sbjct: 62  SK--KDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDAL 119

Query: 121 GRSI 124
             ++
Sbjct: 120 ELAL 123

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (151), Expect = 3e-14
 Identities = 23/115 (20%), Positives = 52/115 (45%), Gaps = 4/115 (3%)

Query: 25  SNPERSGWLTKQGEYI-KTWRRRWFVLKQGKLFWF-KESTVTRASKPRGVIPVASCLTVK 82
           S  + SG+L   G+ + K W++R+FVL Q   + F   S   + ++P+ ++ +       
Sbjct: 6   SGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDY 65

Query: 83  GAEDVLNKQYAF--ELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSE 135
                  +            +T+ F +D E+++  W+ ++ R+  Q  + V  ++
Sbjct: 66  TDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQSHKPVPPTQ 120

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 5e-14
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL 88
           + G L KQG   K W+ R F+L++   +         A  P G I +  C+      +  
Sbjct: 4   KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDP-AGAEDPLGAIHLRGCVVTSVESNSN 62

Query: 89  ----NKQYAFELSTRTETMY-FIADSEKEKEDWINSIGRSI 124
                ++  FE+ T  E  Y   A + KE+ +WI +I  + 
Sbjct: 63  GRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 103

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 5e-14
 Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 4/106 (3%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL 88
           + GWL K+GEYIKTWR R+F+LK    F   +       +    +   S    +  +   
Sbjct: 9   KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 68

Query: 89  NKQYAFELST----RTETMYFIADSEKEKEDWINSIGRSIVQHSRS 130
            +   F +            F  ++ +E+E+W  +I        + 
Sbjct: 69  PRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKKQ 114

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 6e-14
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 4/100 (4%)

Query: 29  RSGWLTKQGE----YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA 84
           + G+L K+ +    +   W++RW V+ +G  +++      +      +   +  +     
Sbjct: 3   KQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLR 62

Query: 85  EDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSI 124
            D   +      S    T  F A S  E  DW++ I   +
Sbjct: 63  RDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLL 102

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 7e-14
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 31/130 (23%)

Query: 30  SGWLTKQGE-----YIKTWRRRWFVLKQGKLFWFK-ESTVTRASKPRGVIPVASCLTV-- 81
                K+ +         +++  F+L   KL +++ +    R    +G I V     V  
Sbjct: 6   ESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVET 65

Query: 82  -----------------------KGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWIN 118
                                  +    +    Y F++      +Y  + +E+ ++ WI+
Sbjct: 66  VVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIH 125

Query: 119 SIGRSIVQHS 128
            +   I  +S
Sbjct: 126 QLKNVIRYNS 135

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 117

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.2 bits (147), Expect = 1e-13
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 8/112 (7%)

Query: 25  SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA 84
           S     G L K+G ++K W+ RWFVL + K            ++ +GVI +A    V   
Sbjct: 6   SGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDH-RMDTECKGVIDLAEVEAVAPG 64

Query: 85  EDVLNK------QYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRS 130
              +        +  F++ T      F A      + W++ I +S +    S
Sbjct: 65  TPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRI-QSCLSSGPS 115

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 3e-13
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 27  PERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTV-KGA 84
               GWL KQ    ++ W+RRWFVL    LF++K+S         G + + S      G 
Sbjct: 9   VHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREE---SVLGSVLLPSYNIRPDGP 65

Query: 85  EDVLNKQYAFELSTR-TETMYFIADSEKEKEDWINSIGRSI 124
                +++ F        T    AD+ ++   W+ ++GR+ 
Sbjct: 66  GAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRAS 106

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 7e-13
 Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 30  SGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVK-GAEDVL 88
            G L       +TW   W  +             ++  +    IP+ SC       E+ L
Sbjct: 4   CGPLRLSESG-ETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERL 62

Query: 89  NKQYAFELSTRTETMYFIADSEKEKEDWINSIGRS 123
           +  + ++L    ++ Y  A S + ++ W+ ++  +
Sbjct: 63  DSGHVWKLQWAKQSWYLSASSAELQQQWLETLSTA 97

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 9e-13
 Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 9/103 (8%)

Query: 29  RSGWLTKQG-EYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDV 87
           +SGWL K   +  + +++RW       + ++      +    +G+IP+++  TV+     
Sbjct: 3   KSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNN---EKEMYSKGIIPLSAISTVRV---- 55

Query: 88  LNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRS 130
                 FE+ T   T  F  + E+E+ DWI+ +  ++   S +
Sbjct: 56  -QGDNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKSQSLT 97

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (138), Expect = 2e-12
 Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 3/106 (2%)

Query: 25  SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA 84
           S    SG+L +     K W+  WFV+K   L+ +  S            P+         
Sbjct: 6   SGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVA---ALESQPLLGFTVTLVK 62

Query: 85  EDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRS 130
           ++    +    L        F AD     + WI++     V    S
Sbjct: 63  DENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTVSGPSS 108

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 57.2 bits (137), Expect = 4e-12
 Identities = 12/113 (10%), Positives = 37/113 (32%), Gaps = 13/113 (11%)

Query: 25  SNPERSGWLTKQGEYI--------KTWRRRWFVLKQGKLFWFKESTVTRASK-----PRG 71
           +     G++T++ E+         ++W + +   K G++ ++K+    +++         
Sbjct: 6   AGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEP 65

Query: 72  VIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSI 124
              + +      ++    K                A  + E   W+ S+    
Sbjct: 66  SYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQS 118

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 1e-11
 Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 7/97 (7%)

Query: 27  PERSGWL---TKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKG 83
             ++G+L    K G    TW R+++  + G L                 + + +C  +  
Sbjct: 5   TRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARGD----VAGGLAMDIDNCSVMAV 60

Query: 84  AEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSI 120
             +     +        ++    A+S+K+ E+WI +I
Sbjct: 61  DCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTI 97

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (134), Expect = 1e-11
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 10/117 (8%)

Query: 28  ERSGWLT----------KQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVAS 77
            + GWL           + G  I+ W++ + VL+   L+ +K+                +
Sbjct: 2   AKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVN 61

Query: 78  CLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDS 134
              +  +     ++  F L+T      F A+   +   WI +I  S   +      +
Sbjct: 62  ACLIDISYSETKRKNVFRLTTSDCECLFQAEDRDDMLAWIKTIQESSNLNEEDTGVT 118

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.4 bits (132), Expect = 1e-11
 Identities = 14/103 (13%), Positives = 36/103 (34%), Gaps = 10/103 (9%)

Query: 29  RSGWLTKQGE----YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGA 84
           ++G+L K+ +        W++RW  L +   +++         + +G   +         
Sbjct: 11  KAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDK---QQKGEFAIDGYDVRMNN 67

Query: 85  EDVLNKQYAFE---LSTRTETMYFIADSEKEKEDWINSIGRSI 124
               + +        +       F A S K+ E+W+  +   +
Sbjct: 68  TLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL 110

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 2e-11
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 14/101 (13%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFK---------ESTVTRASKPRGVIPVASCL 79
           + G+L K     K+  +R+FVL+                 +    ++S P+  IP+ SC 
Sbjct: 4   KVGYLRKP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCF 59

Query: 80  TVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSI 120
            +    D    ++   L TR E     ADSE E++ W  ++
Sbjct: 60  NINKRADS-KNKHLVALYTRDEHFAIAADSEAEQDSWYQAL 99

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (133), Expect = 3e-11
 Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 11/108 (10%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL 88
           + G + K+       RRR  +L +G   ++ +         +G IP +            
Sbjct: 50  KMGPVDKRKG--LFARRRQLLLTEGPHLYYVDPV---NKVLKGEIPWSQE-----LRPEA 99

Query: 89  NKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSEI 136
                F + T   T Y   D       W   I     Q  +S  D+ +
Sbjct: 100 KNFKTFFVHTPNRTYYL-MDPSGNAHKWCRKIQEVWRQRYQSHPDAAV 146

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 5e-11
 Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 3/91 (3%)

Query: 30  SGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLN 89
            G+L  +    + +   W  L+   LF++ +    ++      + +     +        
Sbjct: 14  EGFLLIKRSGYREYEHYWTELRGTTLFFYTD---KKSIIYVDKLDIVDLTCLTEQNSTEK 70

Query: 90  KQYAFELSTRTETMYFIADSEKEKEDWINSI 120
               F L    E +    ++ +  E+W   I
Sbjct: 71  NCAKFTLVLPKEEVQLKTENTESGEEWRGFI 101

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 7e-11
 Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 13/107 (12%)

Query: 29  RSGWLTKQGEYI--KTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAED 86
           R GWLT     I     +  WFVL    L W+K+       + + ++ V +       + 
Sbjct: 5   RKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKD---DEEKEKKYMLSVDNLKLRDVEKG 61

Query: 87  VLNKQYAFEL--------STRTETMYFIADSEKEKEDWINSIGRSIV 125
            ++ ++ F L              +    ++++E + W  S  R+ V
Sbjct: 62  FMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGV 108

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.3 bits (124), Expect = 2e-10
 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 6/99 (6%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL 88
           ++G L  +      W   +FVL   K+++ +E   T +   RGV+ V +C      E   
Sbjct: 3   KNGILYLEDPVNHEWYPHYFVLTSSKIYYSEE---TSSDLLRGVLDVPACQIAIRPEGKN 59

Query: 89  NKQYAFELSTRT---ETMYFIADSEKEKEDWINSIGRSI 124
           N+ + F +S  +    ++   ADS++E +DW+  I    
Sbjct: 60  NRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVA 98

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 5e-10
 Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 28  ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDV 87
           E S +L         W+ RW  ++   L ++++   ++    +  + +  C  V      
Sbjct: 2   ETSSYLNVLVN--SQWKSRWCSVRDNHLHFYQDRNRSK--VAQQPLSLVGC-EVVPDPSP 56

Query: 88  LNKQYAFELSTRTETMYFIADSEKEKEDWINSI 120
            +      L    E     A S +E   W+  +
Sbjct: 57  DHLYSFRILHKGEELAKLEAKSSEEMGHWLGLL 89

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.6 bits (122), Expect = 6e-10
 Identities = 15/108 (13%), Positives = 39/108 (36%), Gaps = 7/108 (6%)

Query: 30  SGWLTKQGEYI-KTWRRRWFVLKQGKLFWF----KESTVTRASKPRGVIPVASCLTVKGA 84
            G+L  +       + RR+F+L                +   +   G + +     V  A
Sbjct: 18  CGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIA 77

Query: 85  E--DVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRS 130
                    + F ++  ++  +  A+ +K+ +DW+ ++ ++      S
Sbjct: 78  TPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASKSGPSS 125

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.8 bits (123), Expect = 6e-10
 Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 14/114 (12%)

Query: 25  SNPERSGWL--------TKQGEYIKTWRRRWFVLKQGKLFWFKES---TVTRASKPRGVI 73
            + +R G L                 W++   +L++               +AS+P+  I
Sbjct: 16  VDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSI 75

Query: 74  PVASC--LTVKGAEDVLNKQYAFELSTRTETMYFI-ADSEKEKEDWINSIGRSI 124
           P+++   +      ++  K   F L       Y +      +K  W+  I   +
Sbjct: 76  PLSAIIEVRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCV 129

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 7e-10
 Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 9/103 (8%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVL 88
           R GW+          +R ++ L    +  F+ +T    ++    IP++  LTV+ A++  
Sbjct: 3   REGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNT---TNRYYKEIPLSEILTVESAQNFS 59

Query: 89  -----NKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQ 126
                   + FE+ T   T +             +  G    +
Sbjct: 60  LVPPGTNPHCFEIVTANATYFVGEMPG-GTPGGPSGQGAEAAR 101

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]} Length = 132

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (123), Expect = 7e-10
 Identities = 14/95 (14%), Positives = 33/95 (34%)

Query: 30  SGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLN 89
              +  Q    +    R+F+L    L     S        +G IP+A  +  +  E   +
Sbjct: 31  MSQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEIEGS 90

Query: 90  KQYAFELSTRTETMYFIADSEKEKEDWINSIGRSI 124
                   +  E +    ++ ++ ++W+  + R  
Sbjct: 91  DCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLT 125

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

 Score = 49.7 bits (117), Expect = 3e-09
 Identities = 13/104 (12%), Positives = 37/104 (35%), Gaps = 11/104 (10%)

Query: 31  GWLTKQGEYI--------KTWRRRWFVLKQGKLFWFKESTVTRASK---PRGVIPVASCL 79
           G+L ++ E+         ++W   + V+   ++ ++K++    +         + +   +
Sbjct: 3   GFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAI 62

Query: 80  TVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRS 123
                +    K       +      F A  ++E   WI +I  +
Sbjct: 63  CEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 9e-09
 Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 11/111 (9%)

Query: 25  SNPERSGWLTKQGEY--------IKTWRRRWFVLKQGKLFWF---KESTVTRASKPRGVI 73
           S  +  G L ++ E          ++W+  + VL++G L ++   K ++          +
Sbjct: 6   SGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPV 65

Query: 74  PVASCLTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSI 124
            +A        +    K          +   F A  E E   W+  +  +I
Sbjct: 66  SLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAI 116

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]} Length = 119

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.7 bits (112), Expect = 1e-08
 Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 7/108 (6%)

Query: 25  SNPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKG 83
            +    G+++K G  ++  W+RR+F L   +L W  E    ++            +    
Sbjct: 8   KDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEGEAPQSLLTM------EEIQSVE 61

Query: 84  AEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSV 131
              +  ++         +      DS+ E   W   +  +  +  + V
Sbjct: 62  ETQIKERKCLLLKIRGGKQFVLQCDSDPELVQWKKELRDAYREAQQLV 109

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 2e-07
 Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 10/117 (8%)

Query: 28  ERSGWLTKQGE------YIKTWRRRWFVLKQGKLFWFKES---TVTRASKPRGVIPVASC 78
            + GWL K          +++++RR+F L Q     +  +       + +P+G I + SC
Sbjct: 19  TKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSC 78

Query: 79  LTVKGAEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSE 135
           + V     V  +           +    ADSE E E+WI  + + +  +  +    +
Sbjct: 79  MGVVQNNKV-RRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFEAAMQEK 134

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (92), Expect = 2e-05
 Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 10/103 (9%)

Query: 28  ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPR--------GVIPVASCL 79
            +   L K         R + + +  K  W +   V R+ + +         V       
Sbjct: 12  LKGSQLLKVKSSSWRRERFYKLQEDCKTIWQESRKVMRSPESQLFSIEDIQEVRMGHRTE 71

Query: 80  TVKGAEDVLNKQYAFEL--STRTETMYFIADSEKEKEDWINSI 120
            ++     + +   F +    +  T+  IA S  + + W+  +
Sbjct: 72  GLEKFARDIPEDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGL 114

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 162

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.6 bits (89), Expect = 6e-05
 Identities = 19/123 (15%), Positives = 41/123 (33%), Gaps = 8/123 (6%)

Query: 29  RSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRAS-KPRGVIPVASC-----LTVK 82
            +G +    +     ++R F L   ++   K+  + R     +G I +           +
Sbjct: 29  YTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGR 88

Query: 83  GAEDVLNKQYAFELS--TRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSEIVDYD 140
             +  ++ + AF+L      E   F A   +EK  W+ +                 +  +
Sbjct: 89  DDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQEDEKIGFEISEN 148

Query: 141 SKR 143
            KR
Sbjct: 149 QKR 151

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 109

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 2e-04
 Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 9/106 (8%)

Query: 32  WLTKQGEYIKTWRRRWFVLKQGKLFWF--------KESTVTRASKPRGVIPVASCLTVKG 83
           +L   G+ ++        L++   F                   +   + P+     V  
Sbjct: 3   YLVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVN- 61

Query: 84  AEDVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSR 129
            +D    +  F+L    E+  F A++ K K +W+  +  +    S 
Sbjct: 62  VKDNPPMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETKRALSD 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	99.93
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	99.9
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	99.9
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	99.9
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	99.89
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	99.89
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	99.89
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	99.88
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	99.88
d1wi1a_	126	Calcium-dependent activator protein for secretion,	99.87
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	99.86
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.86
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	99.86
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	99.86
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	99.86
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.85
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	99.85
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	99.85
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	99.84
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	99.84
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	99.84
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	99.84
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.83
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	99.81
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	99.81
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	99.81
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	99.81
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	99.79
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	99.75
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	99.59
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	99.27
d1zc3b1	109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	99.25
d1dbha2	133	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	99.06
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	98.95
d1ki1b2	142	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	98.79
d1ntya2	121	Triple functional domain protein TRIO {Human (Homo	98.74
d1xcga2	140	Rho guanine nucleotide exchange factor 11, PDZ-Rho	98.59
d1txda2	114	Rho guanine nucleotide exchange factor 12 {Human (	98.55
d1kz7a2	147	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	98.46
d2adza1	105	Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1	98.42
d1fhoa_	119	UNC-89 {Nematode (Caenorhabditis elegans) [TaxId:	98.06
d2zkmx3	131	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	94.58
d1foea2	162	GEF of TIAM1 (T-Lymphoma invasion and metastasis i	93.75

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.9e-25  Score=133.16  Aligned_cols=97  Identities=29%  Similarity=0.593  Sum_probs=86.0

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEEE
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYF  105 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~~  105 (143)
                      ...++|||.|+++..+.|++|||||.++.|.||+++.   +..|.+.|+|.+|..+..... ..++++|.|.+++++++|
T Consensus         3 ~~~KeG~L~K~~~~~k~Wk~R~fvL~~~~L~yy~~~~---~~~~~g~i~L~~~~~v~~~~~-~~~~~~F~i~~~~r~~~l   78 (100)
T d1faoa_           3 LGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQM---SPEPIRILDLTECSAVQFDYS-QERVNCFCLVFPFRTFYL   78 (100)
T ss_dssp             TTCEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTT---CSSCSEEEEGGGCCEEEEECS-SSSSSEEEEEETTEEEEE
T ss_pred             CccEEEEEEEeCCCCCCceEEEEEEECCEEEEEeccC---CccCceEEechheEEEEeccc-cccccccccccCCeEEEE
Confidence            3589999999998888999999999999999999887   567999999999876655443 367899999999999999


Q ss_pred             EcCCHHHHHHHHHHHHHHHHh
Q 032301          106 IADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus       106 ~a~s~~e~~~W~~al~~~~~~  126 (143)
                      +|+|.+++++|+.||+.++.+
T Consensus        79 ~a~s~~~~~~Wi~ai~~~i~~   99 (100)
T d1faoa_          79 CAKTGVEADEWIKILRWKLSQ   99 (100)
T ss_dssp             ECSSHHHHHHHHHHHHHHHHT
T ss_pred             EeCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999998864

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.4e-23  Score=130.14  Aligned_cols=94  Identities=20%  Similarity=0.369  Sum_probs=81.8

Q ss_pred             ceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcc-----cCCCcceEEEEeCCeE
Q 032301           28 ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAED-----VLNKQYAFELSTRTET  102 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~-----~~~~~~~f~i~~~~~~  102 (143)
                      +++|||.|++...+.|++|||||.++.|.||+++.   ...|.+.|+|..+..+....+     ...++++|.|.+++++
T Consensus         2 lk~GwL~k~~~~~~~wkkRwFvL~~~~L~YYk~~~---~~~p~g~I~L~~~~~v~~~~~~~~~~~~~~~~~F~I~T~~rt   78 (112)
T d2coaa1           2 LREGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNT---TNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTANAT   78 (112)
T ss_dssp             SEEEEEEECCSSSCCCEEEEEEECSSEEEEESSSS---CSSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECSSCC
T ss_pred             ceEEEEEEECCCCCCeeEEEEEEEcceEEEEeccC---CCccceEEeeeccccccccccccccccCCCccEEEEEeCCeE
Confidence            68999999998889999999999999999999987   667999999998777765433     2346799999999999


Q ss_pred             EEEEc-----------CCHHHHHHHHHHHHHHH
Q 032301          103 MYFIA-----------DSEKEKEDWINSIGRSI  124 (143)
Q Consensus       103 ~~~~a-----------~s~~e~~~W~~al~~~~  124 (143)
                      |||.+           ++++++.+|+.||+.|+
T Consensus        79 yy~~~~~~~~~~~~s~~~~~~~~~W~~aI~~A~  111 (112)
T d2coaa1          79 YFVGEMPGGTPGGPSGQGAEAARGWETAIRQAL  111 (112)
T ss_dssp             CCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHG
T ss_pred             EEEecCCccccccccccChHHHHHHHHHHHHhh
Confidence            99966           67889999999999875

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.8e-22  Score=124.14  Aligned_cols=102  Identities=21%  Similarity=0.332  Sum_probs=86.8

Q ss_pred             ccCCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC-e
Q 032301           23 FWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT-E  101 (143)
Q Consensus        23 ~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~-~  101 (143)
                      ....++++|||++++...+.|++|||+|.++.|+||+++.   ...+...+.|.++......+ ...++++|.|.+.+ .
T Consensus         4 ~~~~~~~~G~L~k~~~~~~~W~kr~~vL~~~~L~~~k~~~---~~~~~~~i~l~~~~~~~~~~-~~~~~~~F~i~~~~~~   79 (109)
T d1wgqa_           4 GSSGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASE---DVAALESQPLLGFTVTLVKD-ENSESKVFQLLHKGMV   79 (109)
T ss_dssp             CCCSCSCEEEEEEESSTTSCCEEEEEEEETTEEEEESCTT---CSSCSEEEECSSEEEEECCC-SSCSSSEEEEEETTEE
T ss_pred             CCCCCcEEEEEEEECCCCCCceEEEEEEeCCEEEEecccc---ccccccccccceeeeeeccc-ccccceeeeeecccce
Confidence            3456899999999988888999999999999999999987   56688999999976555443 35778999999876 5


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301          102 TMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus       102 ~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                      .++|+|++++++++|+.||+.|+...+
T Consensus        80 ~~~f~a~s~~~~~~Wi~ai~~a~~~~p  106 (109)
T d1wgqa_          80 FYVFKADDAHSTQRWIDAFQEGTVSGP  106 (109)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHHSCCC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhccCC
Confidence            789999999999999999999987543

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=4.5e-23  Score=125.38  Aligned_cols=95  Identities=25%  Similarity=0.481  Sum_probs=83.7

Q ss_pred             ceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC---eEEE
Q 032301           28 ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT---ETMY  104 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~---~~~~  104 (143)
                      +++|||++++...+.|++|||+|.++.|.||+++.   ...|.+.++|.++.++.......+++++|.|.++.   ++++
T Consensus         2 iK~G~L~k~~~~~k~W~kR~fvL~~~~L~yy~~~~---~~~~~~~i~l~~~~v~~~~~~~~~~~~~f~i~~~~~~~~~~~   78 (101)
T d2fjla1           2 IKNGILYLEDPVNHEWYPHYFVLTSSKIYYSEETS---SDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLD   78 (101)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEETTEEEECCCCS---CTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEE
T ss_pred             ceEEEEEEEcCCCCCCeEEEEEEECCEEEEEeccc---cceecceEEcCCceeEeeeeecccccceeEEeccccccEEEE
Confidence            68999999988888999999999999999999877   66789999999987766555555678999999864   6799


Q ss_pred             EEcCCHHHHHHHHHHHHHHHH
Q 032301          105 FIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus       105 ~~a~s~~e~~~W~~al~~~~~  125 (143)
                      |+|+|.+|+.+|+.||+.++.
T Consensus        79 ~~a~s~~e~~~Wi~ai~~~~~   99 (101)
T d2fjla1          79 VAADSQEELQDWVKKIREVAQ   99 (101)
T ss_dssp             EEESSHHHHHHHHHHHHHHHT
T ss_pred             EEeCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999875

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5e-22  Score=122.83  Aligned_cols=104  Identities=23%  Similarity=0.546  Sum_probs=91.1

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC-eEE
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT-ETM  103 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~-~~~  103 (143)
                      ..++++|||.+++...+.|++|||||.++.|+||+++.   ...|.+.++|.++..+...++...+.++|.|.+.+ +.+
T Consensus         3 ~~~ikeG~L~k~~~~~k~WkkryfvL~~~~L~~y~~~~---~~~p~~~i~l~~~~~~~~~~~~~~~~~~f~l~~~~~~~~   79 (113)
T d1plsa_           3 PKRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKS---DNSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQDH   79 (113)
T ss_dssp             CCCSEEEEEEEESSSSSCCEEEEEEEETTEEEEESSTT---CSSCSEEEESSSCCEESSCCSSCCSSSEEEEEETTTEEE
T ss_pred             CCceEEEEEEEeCCCCCCceEEEEEEECCEEEEEecCC---ccccceEEECccCeEEeeecccCCcceEEEEecCCCeEE
Confidence            35799999999988888999999999999999998887   66799999999987777666666778999988865 789


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHHhhCCCC
Q 032301          104 YFIADSEKEKEDWINSIGRSIVQHSRSV  131 (143)
Q Consensus       104 ~~~a~s~~e~~~W~~al~~~~~~~~~~~  131 (143)
                      +|+|+|.+|+.+|+.||+.++.......
T Consensus        80 ~~~a~s~~e~~~Wi~ai~~ai~~~~~~~  107 (113)
T d1plsa_          80 FFQAAFLEERDAWVRDINKAIKCIEGLE  107 (113)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCcCCC
Confidence            9999999999999999999999776553

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.1e-22  Score=123.71  Aligned_cols=99  Identities=31%  Similarity=0.630  Sum_probs=86.2

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCc--ccCCCcceEEEEeCCeEE
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE--DVLNKQYAFELSTRTETM  103 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~--~~~~~~~~f~i~~~~~~~  103 (143)
                      .++++|||+|++...+.|++|||+|.++.|.||+++.   ...+.+.++|..+..+....  ......++|.|.++++++
T Consensus         2 ~vik~G~L~K~~~~~~~Wkkr~fvL~~~~l~yy~~~~---~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~   78 (103)
T d1eaza_           2 AVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSEL---EKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTF   78 (103)
T ss_dssp             CCSEEEEEEEECTTTCCEEEEEEEECSSEEEEESSTT---CSSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECSSCEE
T ss_pred             ceEEEEEEEEECCCCCCeeEEEEEEECCEEEEEeccc---CcccceEEEccceEEeeccccccccccceEEEEEeCCEEE
Confidence            5789999999988888999999999999999999887   56799999999876654433  234568999999999999


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHHhh
Q 032301          104 YFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus       104 ~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      +|+|+|++|+.+|+.+|+.|+...
T Consensus        79 ~~~a~s~~e~~~W~~aI~~ai~~~  102 (103)
T d1eaza_          79 YVQADSPEEMHSWIKAVSGAIVAQ  102 (103)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHHHT
T ss_pred             EEEeCCHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999998753

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.2e-22  Score=129.90  Aligned_cols=100  Identities=12%  Similarity=0.184  Sum_probs=87.8

Q ss_pred             CceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEEEE
Q 032301           27 PERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFI  106 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~  106 (143)
                      +.++|||.+++...+.|++|||||+++.|.||+++.   +..+.+.|+|.++..+....+..+.+++|.|.+++++++|+
T Consensus        11 ~~~eG~L~k~~~~~k~WkkrwfvL~~~~L~yY~~~~---d~~~~~~i~L~~~~~~~~~~~~~~~~~~F~i~~~~~~~~f~   87 (136)
T d1x1fa1          11 LYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKK---SIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPKEEVQLK   87 (136)
T ss_dssp             EEEEEEEEEECTTCCSCEEEEEEEETTEEEEESCSS---CSSCSEECCCSSCCEEEECCCTTSCCCEEEEECSSCCEEEE
T ss_pred             ccEEEEEEEECCCCCCeEEEEEEEcCCEeEEEeecc---cccccccccccceeeeeeecccccccceeeecCCCceEEEE
Confidence            468999999988888999999999999999999887   66799999999987666555555668999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHhhCC
Q 032301          107 ADSEKEKEDWINSIGRSIVQHSR  129 (143)
Q Consensus       107 a~s~~e~~~W~~al~~~~~~~~~  129 (143)
                      |+|.+++.+|+.+|+.++....+
T Consensus        88 Aes~~e~~~Wi~~I~~v~~~~~p  110 (136)
T d1x1fa1          88 TENTESGEEWRGFILTVTELSVP  110 (136)
T ss_dssp             CSSHHHHHHHHHHHHHHHHSSCC
T ss_pred             eCCHHHHHHHHHHHHHHHhccCC
Confidence            99999999999999999875443

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.8e-22  Score=123.67  Aligned_cols=103  Identities=27%  Similarity=0.611  Sum_probs=86.8

Q ss_pred             cCCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCc-ccCCCcceEEEEeCC--
Q 032301           24 WSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE-DVLNKQYAFELSTRT--  100 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~-~~~~~~~~f~i~~~~--  100 (143)
                      .+.++++|||+|++...+.|++|||+|.++.|+||+++.   ...+.+.++|..+..+.... .....+++|.|.++.  
T Consensus         5 ~s~~~k~G~L~K~~~~~k~WkkR~fvL~~~~l~y~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~l~~~~~~   81 (118)
T d1v89a_           5 SSGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEE---DTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWD   81 (118)
T ss_dssp             SSCEEEEEEEEEECSSSSCEEEEEEEEETTEEEEESSSS---CCSCSEEECSTTEEEEEECCCSSCCCCCEEEEEESCCS
T ss_pred             CCCCeEEEEEEEECCCCCCcEEEEEEEECCEEEEecccC---cccccceeccCceEEEEeccccccCCCcEEEEecCCCc
Confidence            446899999999988889999999999999999999887   66789999999976665433 334568999999764  


Q ss_pred             ------eEEEEEcCCHHHHHHHHHHHHHHHHhhCC
Q 032301          101 ------ETMYFIADSEKEKEDWINSIGRSIVQHSR  129 (143)
Q Consensus       101 ------~~~~~~a~s~~e~~~W~~al~~~~~~~~~  129 (143)
                            ++++|+|++++|+.+|+.||+.|+...+.
T Consensus        82 ~~~~~~~~~~~~a~s~ee~~~Wi~aI~~a~~~~p~  116 (118)
T d1v89a_          82 QNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGPS  116 (118)
T ss_dssp             SCCSSCCCEEEECSSHHHHHHHHHHHHHHHHCCSC
T ss_pred             ceecCCcEEEEEcCCHHHHHHHHHHHHHHHccCCC
Confidence                  56999999999999999999999886543

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.4e-22  Score=121.67  Aligned_cols=95  Identities=24%  Similarity=0.516  Sum_probs=82.9

Q ss_pred             ceEEEEEEeCC-CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEEEE
Q 032301           28 ERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYFI  106 (143)
Q Consensus        28 ~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~  106 (143)
                      +++|||.|+++ ..+.|++|||+|.++.|.||+++.   ...|.+.|+|.++..+..     .+.++|.|.+++++++|+
T Consensus         2 ik~G~L~K~~~~~~~~W~kr~fvL~~~~L~~~~~~~---~~~~~~~i~L~~~~~~~~-----~~~~~f~i~~~~~~~~l~   73 (102)
T d2coda1           2 VKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEK---EMYSKGIIPLSAISTVRV-----QGDNKFEVVTTQRTFVFR   73 (102)
T ss_dssp             CEEEEEEECCSSSSSCCEEEEEEECSSEEEEEESSC---CSSCCCEEETTTEEEEEE-----ETTTEEEEEESSCCEEEE
T ss_pred             cEEEEEEEECCCCCCCceEEEEEEECCEEEEEeccC---cceeEEEEEchhceeecc-----ccceeEEEEcCCcEEEEE
Confidence            68999999874 457899999999999999999987   567999999999876643     346899999999999999


Q ss_pred             cCCHHHHHHHHHHHHHHHHhhCCC
Q 032301          107 ADSEKEKEDWINSIGRSIVQHSRS  130 (143)
Q Consensus       107 a~s~~e~~~W~~al~~~~~~~~~~  130 (143)
                      |+|.+|+.+|+.||+.++......
T Consensus        74 a~s~~e~~~Wi~ai~~~i~~~~~~   97 (102)
T d2coda1          74 VEKEEERNDWISILLNALKSQSLT   97 (102)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHSTT
T ss_pred             eCCHHHHHHHHHHHHHHHHhCcCC
Confidence            999999999999999998765443

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.6e-22  Score=124.78  Aligned_cols=99  Identities=21%  Similarity=0.435  Sum_probs=79.6

Q ss_pred             ccCCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC--
Q 032301           23 FWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT--  100 (143)
Q Consensus        23 ~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~--  100 (143)
                      ..+.++++|||.+++ ..+.|++|||||.++.|.||+++.   ...|.+.|+|.++.+++...  ...+++|.|.++.  
T Consensus         4 ~~~~~~~~GwLkk~~-~~k~WkkRwfvL~~~~L~yyk~~~---~~~~~g~i~L~~~~v~~~~~--~~~~~~f~i~~~~~~   77 (130)
T d1v88a_           4 GSSGIVMADWLKIRG-TLKSWTKLWCVLKPGVLLIYKTQK---NGQWVGTVLLNACEIIERPS--KKDGFCFKLFHPLEQ   77 (130)
T ss_dssp             SSSSCCEEEEEEECC-SSSSCEEEEEEEETTEEEEESCSS---SCCCCEEEECSSCEECCCCT--TTSSCEEEEECTTCC
T ss_pred             CCCCCeEeCeEEeCC-CCCCceEEEEEEeCCEEEEEcCCC---CCcceeEEECCCeEEEEccc--cCCCceEEEEcCCCc
Confidence            445689999996654 568899999999999999999987   56799999999986544322  3567889886532  


Q ss_pred             ----------------------eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301          101 ----------------------ETMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus       101 ----------------------~~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                                            ..++|+|+|++|+.+|+.||+.++...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~A~s~~e~~~Wi~al~~~i~~~  126 (130)
T d1v88a_          78 SIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKSG  126 (130)
T ss_dssp             CCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTTT
T ss_pred             ceecccCcccccceeEEecCCcEEEEEECCCHHHHHHHHHHHHHHhhcC
Confidence                                  226789999999999999999998643

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.9e-22  Score=123.26  Aligned_cols=95  Identities=20%  Similarity=0.373  Sum_probs=79.6

Q ss_pred             CceEEEEEEeCCC--CCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC----
Q 032301           27 PERSGWLTKQGEY--IKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT----  100 (143)
Q Consensus        27 ~~~~G~L~k~~~~--~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~----  100 (143)
                      ++++|||.+++..  .+.|++|||||.++.|.||++++   ...+.+.++|.++..........+++++|.|.++.    
T Consensus         3 vik~GwL~k~~~~~~~~~WkkRwFvL~~~~L~yyk~~~---~~~~~~~i~l~~~~v~~~~~~~~~~~~~F~l~~~~~~~~   79 (111)
T d2dyna_           3 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDE---EKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNV   79 (111)
T ss_dssp             EEEEEEEEETTCCTTTTSSEEEEEEEESSEEEEESSTT---CCCEEEEEECTTEEEEEECCCSTTCSEEEEEEESSCSCS
T ss_pred             EEEEeeEEEECCCCCcCCceEEEEEEECCEEEEEcchh---hcccccccccccceeEeeccccccccccEEeeecccccc
Confidence            6899999998543  46799999999999999999987   56799999999875544444445789999998753    


Q ss_pred             ----eEEEEEcCCHHHHHHHHHHHHHHH
Q 032301          101 ----ETMYFIADSEKEKEDWINSIGRSI  124 (143)
Q Consensus       101 ----~~~~~~a~s~~e~~~W~~al~~~~  124 (143)
                          ++++|+|+|++|+.+|+.||..|.
T Consensus        80 ~~~~r~~~l~a~s~ed~~~W~~al~~A~  107 (111)
T d2dyna_          80 YKDYRQLELACETQEEVDSWKASFLRAG  107 (111)
T ss_dssp             BTTBSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred             ccCceeEEEECCCHHHHHHHHHHHHHhc
Confidence                579999999999999999998865

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=6.4e-22  Score=122.88  Aligned_cols=102  Identities=24%  Similarity=0.491  Sum_probs=84.5

Q ss_pred             cccCCCceEEEEEEeCCCCCCceeEEEEEEC--CeEEEEecCCCCCCCCcceEEeCCceEEeecCccc------CCCcce
Q 032301           22 EFWSNPERSGWLTKQGEYIKTWRRRWFVLKQ--GKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDV------LNKQYA   93 (143)
Q Consensus        22 ~~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~--~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~------~~~~~~   93 (143)
                      +..+.+.++|||.|++...+.|++|||||..  ..|+||+++.   +..|.+.|+|.++..+......      ....+.
T Consensus         3 ~~~s~~~~eG~L~k~~~~~k~WkkR~fvL~~~~~~L~~~~~~~---~~~p~g~i~l~~~~~v~~~~~~~~~~~~~~~~~~   79 (117)
T d1v5ua_           3 SGSSGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRM---DTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAF   79 (117)
T ss_dssp             SSCCSSSEEEEEEECCCSSSCCEEEEEEEETTTTEEEEESSSS---CSSCCCEEEGGGEEEEECCCCCTTSCSSSCTTTC
T ss_pred             CCCCCCeEEEEEEEECCCCCCceEEEEEEeCCCCEEEeccccc---ccCcceEEEecceEEEeecccccccccccccceE
Confidence            3445689999999998888899999999964  5688999887   6679999999998776643321      233578


Q ss_pred             EEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           94 FELSTRTETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        94 f~i~~~~~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      |.+.++++.++|+|+|++|+.+|+.+|+.++..
T Consensus        80 ~~~~~~~~~~~~~a~s~~e~~~Wv~~l~~ai~~  112 (117)
T d1v5ua_          80 FDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLSS  112 (117)
T ss_dssp             EEEEESSCEEEEECSSHHHHHHHHHHHHTTCCC
T ss_pred             EEeeCCCcEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999988764

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.8e-21  Score=120.93  Aligned_cols=113  Identities=20%  Similarity=0.325  Sum_probs=85.0

Q ss_pred             ccCCCceEEEEEEeCC-CCCCceeEEEEEECCe--EEEEecCCCCCCCCcceEEeCCceEEeecCc--ccCCCcceEEEE
Q 032301           23 FWSNPERSGWLTKQGE-YIKTWRRRWFVLKQGK--LFWFKESTVTRASKPRGVIPVASCLTVKGAE--DVLNKQYAFELS   97 (143)
Q Consensus        23 ~~~~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~--l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~--~~~~~~~~f~i~   97 (143)
                      ..+.+.++|||+|++. ..+.|++|||||.++.  ++|+.+.... ...+.+.|.+..+..+...+  ......+.|.|.
T Consensus         4 ~~~~~~~~G~L~K~g~~~~k~WkkRwfvL~~~~~~~yy~~~~~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~i~   82 (126)
T d1wi1a_           4 GSSGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREK-KAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAV   82 (126)
T ss_dssp             CCCCEEEEEEEEEECSSSCCSCEEEEEEEEEEETTEEEEEECCSS-SSCCSEEEECSSCEEEECCCCSSCCSCSSEEEEE
T ss_pred             CCCCCcEEEEEEEECCCCCCCceEEEEEEeCCceEEEEEcccccc-cccceeeeeeceeeeeeccccccccccceeEEec
Confidence            3455789999999975 4578999999998664  3444444322 45688999999876554333  223446778899


Q ss_pred             eCCeEEEEEcCCHHHHHHHHHHHHHHHHhhCCCCCCCcc
Q 032301           98 TRTETMYFIADSEKEKEDWINSIGRSIVQHSRSVTDSEI  136 (143)
Q Consensus        98 ~~~~~~~~~a~s~~e~~~W~~al~~~~~~~~~~~~~~~~  136 (143)
                      +++++|+|+|+|++|+.+|+.||+.|+.+...+.++.+.
T Consensus        83 ~~~r~~~f~A~s~~e~~~Wv~al~~a~~~~~~~~~~~~~  121 (126)
T d1wi1a_          83 KEGDTVIFASDDEQDRILWVQAMYRATGQSHKPVPPTQS  121 (126)
T ss_dssp             CSSCEEEEECSSHHHHHHHHHHHHHHHTCSSCCCCCCCC
T ss_pred             cCCeEEEEEECCHHHHHHHHHHHHHHHHhhcCCCCCCCC
Confidence            999999999999999999999999999877666555443

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.8e-21  Score=116.62  Aligned_cols=93  Identities=18%  Similarity=0.322  Sum_probs=78.5

Q ss_pred             ceEEEEEEeCCCCCCceeEEEEEECC---eEEEEecCCCCCCCCcceEEeCCceEEeecCc-ccCCCcceEEEEeCCeEE
Q 032301           28 ERSGWLTKQGEYIKTWRRRWFVLKQG---KLFWFKESTVTRASKPRGVIPVASCLTVKGAE-DVLNKQYAFELSTRTETM  103 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~---~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~-~~~~~~~~f~i~~~~~~~  103 (143)
                      +++|||.++.. .+.|++|||||.++   .|+||+++.   +..|.+.|++.++..+.... ....++++|.|.++++++
T Consensus         2 ~~~G~L~~~~~-~k~W~krwfvL~~~~~~~ly~~~~~~---~~~~~~~i~l~~~~~~~~~~~~~~~~~~~F~i~~~~r~~   77 (99)
T d2coca1           2 LLCGPLRLSES-GETWSEVWAAIPMSDPQVLHLQGGSQ---DGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAKQSW   77 (99)
T ss_dssp             SSEEEEEEESS-SSCEEEEEEECCTTCTTCEEEECCTT---CSSSCSEECGGGCEEECCCSSSCCSSSEEEEEEETTEEE
T ss_pred             ceEEEEEccCC-CCCccEEEEEEecCCccEEEEECcCc---cccccccccccceeeeecccccccCCceEEEEEcCCcEE
Confidence            67999999864 47899999999876   478888876   66799999999986654433 234668999999999999


Q ss_pred             EEEcCCHHHHHHHHHHHHHHH
Q 032301          104 YFIADSEKEKEDWINSIGRSI  124 (143)
Q Consensus       104 ~~~a~s~~e~~~W~~al~~~~  124 (143)
                      +|+|+|++|+.+|+.||+.|+
T Consensus        78 ~l~A~s~~e~~~Wi~aL~~Aa   98 (99)
T d2coca1          78 YLSASSAELQQQWLETLSTAA   98 (99)
T ss_dssp             EEEESSHHHHHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHhc
Confidence            999999999999999999886

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.1e-21  Score=127.43  Aligned_cols=105  Identities=16%  Similarity=0.248  Sum_probs=84.0

Q ss_pred             CCceEEEEEEeCCCC-----CCceeEEEEEECCeEEEEecCCCCC-CCCcceEEeCCceEEeecCccc------------
Q 032301           26 NPERSGWLTKQGEYI-----KTWRRRWFVLKQGKLFWFKESTVTR-ASKPRGVIPVASCLTVKGAEDV------------   87 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~-----~~w~~r~~vL~~~~l~~~~~~~~~~-~~~~~~~i~l~~~~~v~~~~~~------------   87 (143)
                      .++++|||.|++...     ..|++|||||.++.|.||+++.... ...+.+.|.|.++..++..+..            
T Consensus         2 ~vi~eG~L~Kr~~~k~k~~~~~WkrRwFVL~~~~L~Yyk~~~~~~~~~~~kG~I~L~~~~~v~~~~~~~~~~~~~~~~~~   81 (169)
T d1btka_           2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRR   81 (169)
T ss_dssp             CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---
T ss_pred             cEEEEEEEEEecCCCCCcCcCCceEEEEEEECCEEeeeccccccccccCccceEeccceEEEEeecccCCCCcccccccc
Confidence            589999999997532     3699999999999999998775321 2357899999998766433211            


Q ss_pred             -------------CCCcceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhhCCC
Q 032301           88 -------------LNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHSRS  130 (143)
Q Consensus        88 -------------~~~~~~f~i~~~~~~~~~~a~s~~e~~~W~~al~~~~~~~~~~  130 (143)
                                   ....++|+|.+++++++|+|+|.+|+++||.+|+.++......
T Consensus        82 ~~~~~~~~~~~~~~~~~~~F~I~t~~rt~~l~A~s~eE~~~WI~aL~~~i~~~~~~  137 (169)
T d1btka_          82 GEESSEMEQISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVIRYNSDL  137 (169)
T ss_dssp             ------CCTTHHHHCCCEEEEEEETTCCEEEEESCHHHHHHHHHHHHHHHTTCSCC
T ss_pred             ccccccccccccccccCcceEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHhCccc
Confidence                         1346899999999999999999999999999999999865544

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.2e-21  Score=117.77  Aligned_cols=97  Identities=23%  Similarity=0.546  Sum_probs=80.5

Q ss_pred             CceEEEEEEeCC----CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCc--ccCCCcceEEEEeCC
Q 032301           27 PERSGWLTKQGE----YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE--DVLNKQYAFELSTRT  100 (143)
Q Consensus        27 ~~~~G~L~k~~~----~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~--~~~~~~~~f~i~~~~  100 (143)
                      ++++|||++++.    ..+.|++|||||.++.|.||+++.   ...|.+.|+|.++.......  ....++++|.|.+.+
T Consensus         1 vik~G~L~k~~~~~~~~~~~Wkkr~~vL~~~~L~y~~~~~---~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~   77 (106)
T d1u5da1           1 VIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEK---SKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQD   77 (106)
T ss_dssp             EEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTT---CSSCSEEEECTTCEEEECGGGCSSGGGGGEEEEECSS
T ss_pred             CeEEEEEEEECCCCCCCcCCcEEEEEEEECCEEEEEeccc---ccccccccccCCceEeeccccccccCCceeEEEEcCC
Confidence            478999998743    346799999999999999999887   56789999999876554432  223557999999976


Q ss_pred             -eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301          101 -ETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus       101 -~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                       +.++|+|+|+.|+.+|+.||+.++..
T Consensus        78 ~~~~~f~a~s~~e~~~W~~ai~~~i~~  104 (106)
T d1u5da1          78 RRTYEFTATSPAEARDWVDQISFLLKD  104 (106)
T ss_dssp             SCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence             78999999999999999999999874

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.7e-20  Score=117.82  Aligned_cols=98  Identities=39%  Similarity=0.752  Sum_probs=79.7

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEE---------
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL---------   96 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i---------   96 (143)
                      .+.++|||+|++...+.|++|||||.++.|.||+++.   ...+.+.|+|.++..+...+.  .++++|.+         
T Consensus         4 np~keG~L~K~~~~~k~WkrR~fvL~~~~L~yy~~~~---~~~~~g~i~L~~~~v~~~~~~--~~~~~~~~~~~~~~~~~   78 (127)
T d1fgya_           4 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT---DKEPRGIIPLENLSIREVLDP--RKPNCFELYNPSHKGQV   78 (127)
T ss_dssp             SCSEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTT---CSSCSEEEECTTCEEEEECCS--SCSSEEEEECSSSTTCC
T ss_pred             CCceEEEEEEECCCCCCcEEEEEEEECCEEEEEccCC---CccccceEeCCCeEEEEccCC--CCCceEEEecccccccc
Confidence            4689999999988888999999999999999999887   567999999999866544332  33444544         


Q ss_pred             -------------EeCCeEEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301           97 -------------STRTETMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus        97 -------------~~~~~~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                                   ....++++|+|+|.+|+.+|+.||+.++....
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~f~a~s~~e~~~Wi~aL~~~i~~~~  123 (127)
T d1fgya_          79 IKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDP  123 (127)
T ss_dssp             CCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHHCT
T ss_pred             ccccccccceeEeeCCCeEEEEECCCHHHHHHHHHHHHHHHccCC
Confidence                         33446799999999999999999999988553

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.6e-20  Score=114.59  Aligned_cols=96  Identities=26%  Similarity=0.544  Sum_probs=80.8

Q ss_pred             CCceEEEEEEeCC-CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCc-ccCCCcceEEEEeCC-eE
Q 032301           26 NPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE-DVLNKQYAFELSTRT-ET  102 (143)
Q Consensus        26 ~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~-~~~~~~~~f~i~~~~-~~  102 (143)
                      .++++|||++++. ..+.|++|||||.++.|+||+++.   ...+.+.++|.++.++.... ...+.+++|.+.+++ +.
T Consensus         8 ~~~~~G~L~k~~~~~~k~W~kr~~vL~~~~L~~y~~~~---~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~i~~~~~~~   84 (107)
T d1upqa_           8 PVHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSR---EESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRT   84 (107)
T ss_dssp             CEEEEEEEEEECSSSSCCEEEEEEEEETTEEEEESSTT---CCSCCEEEEGGGCEEEECCSSCTTSSSSEEEEECTTSCC
T ss_pred             ceeEEEEEEEeCCCCCCCeeEEEEEEECCEEEEecCcc---cccccceecccceEEEEeccCcccCcceEEEEEcCCCeE
Confidence            3689999999864 457899999999999999999887   56689999999986664433 334567899999875 78


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHH
Q 032301          103 MYFIADSEKEKEDWINSIGRSI  124 (143)
Q Consensus       103 ~~~~a~s~~e~~~W~~al~~~~  124 (143)
                      ++|+|+|++|+.+|+.||+.|+
T Consensus        85 ~~~~a~s~~e~~~Wi~al~~A~  106 (107)
T d1upqa_          85 YVLAADTLEDLRGWLRALGRAS  106 (107)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999886

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=1.5e-20  Score=115.77  Aligned_cols=97  Identities=18%  Similarity=0.405  Sum_probs=80.8

Q ss_pred             CCCceEEEEEEeCC----CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCc--ccCCCcceEEEEe
Q 032301           25 SNPERSGWLTKQGE----YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE--DVLNKQYAFELST   98 (143)
Q Consensus        25 ~~~~~~G~L~k~~~----~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~--~~~~~~~~f~i~~   98 (143)
                      +.++++|||.+++.    ..+.|++|||||.++.|.||+++.   ...|.+.++|.++..+....  ....++++|.|.+
T Consensus         7 ~~v~k~G~L~k~~~~~~~~~~~W~~r~~vL~~~~L~~y~~~~---~~~p~g~i~L~~~~~~~~~~~~~~~~~~~~f~i~~   83 (111)
T d1u5fa1           7 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDK---DKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICA   83 (111)
T ss_dssp             SSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTT---CSSCSEEEECTTCEEEECTTSCSSTTGGGEEEEEC
T ss_pred             CCeeEEEEEEEECCCCCCCcCCceEEEEEEECCEEEeecccc---ccCcceEEEecccEEEeeccccccccccceEEEEc
Confidence            45799999999854    246899999999999999999887   56789999999976654433  2345689999999


Q ss_pred             CC-eEEEEEcCCHHHHHHHHHHHHHHH
Q 032301           99 RT-ETMYFIADSEKEKEDWINSIGRSI  124 (143)
Q Consensus        99 ~~-~~~~~~a~s~~e~~~W~~al~~~~  124 (143)
                      ++ +.++|+|+|++|+.+|++||+.++
T Consensus        84 ~~~~~~~~~a~s~~e~~~W~~ai~~~i  110 (111)
T d1u5fa1          84 PDKRIYQFTAASPKDAEEWVQQLKFIL  110 (111)
T ss_dssp             TTSCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             cCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence            75 789999999999999999998875

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.3e-21  Score=124.33  Aligned_cols=99  Identities=21%  Similarity=0.288  Sum_probs=83.6

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEEE
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMYF  105 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~~  105 (143)
                      .++++|||.|+++  ..|++|||||+++.|.||+++.   ...+.+.|+|..+..++.     ..+++|.|.+++++|+|
T Consensus        47 ~ilK~G~L~Kr~~--~~wkkR~FvL~~~~L~YYkd~~---~~~~kG~I~L~~~~~v~~-----~~~~~F~I~t~~Rty~l  116 (147)
T d1w1ha_          47 LILKMGPVDKRKG--LFARRRQLLLTEGPHLYYVDPV---NKVLKGEIPWSQELRPEA-----KNFKTFFVHTPNRTYYL  116 (147)
T ss_dssp             CEEEEEEEEECCT--TSCEEEEEEEETTTEEEEEETT---TTEEEEEECCCTTCEEEE-----EETTEEEEECSSCEEEE
T ss_pred             eEEEEEEEEeecC--CcceEEEEEEcCCeeEEEeCCC---cccccceEEecccccccc-----ccCceEEEecCceEEEE
Confidence            4789999999864  4799999999999999999987   567899999998876654     34689999999999999


Q ss_pred             EcCCHHHHHHHHHHHHHHHHhhCCCCCCCc
Q 032301          106 IADSEKEKEDWINSIGRSIVQHSRSVTDSE  135 (143)
Q Consensus       106 ~a~s~~e~~~W~~al~~~~~~~~~~~~~~~  135 (143)
                      +|.+ .++.+|+.||+.++..+....++..
T Consensus       117 ~a~~-~d~~~Wv~aI~~v~~~~~~~~~~~~  145 (147)
T d1w1ha_         117 MDPS-GNAHKWCRKIQEVWRQRYQSHPDAA  145 (147)
T ss_dssp             ECTT-SCHHHHHHHHHHHHHHHHCSSTTSS
T ss_pred             EcCh-HHHHHHHHHHHHHHHHHhhhCcccc
Confidence            8865 6899999999999887766655443

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4e-20  Score=119.64  Aligned_cols=100  Identities=29%  Similarity=0.581  Sum_probs=81.2

Q ss_pred             cCCCceEEEEEEeCCC------CCCceeEEEEEECC-----eEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcc
Q 032301           24 WSNPERSGWLTKQGEY------IKTWRRRWFVLKQG-----KLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQY   92 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~------~~~w~~r~~vL~~~-----~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~   92 (143)
                      ...++++|||+|++..      .+.|++|||||.+.     .|.||++...  ...|.++|.|..|..+....  ..+++
T Consensus        15 ~~~v~k~G~L~K~~~~~~~~~~~k~WkkR~fvL~~~~~~~~~L~yy~~~~~--~~~~~g~i~l~~~~~~~~~~--~~~~~   90 (150)
T d1wg7a_          15 KGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKI--SKEPKGSIFLDSCMGVVQNN--KVRRF   90 (150)
T ss_dssp             SCCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCC--SSCCSEEECTTTCCEECCCC--SSCTT
T ss_pred             CCCEeEEEEEEEecCCCCcccccccceEEEEEEEcCcCCceeEEEEecccc--ccccccccccccccccccCc--cccce
Confidence            3568999999998643      25799999999854     4788877653  45789999999987665443  36789


Q ss_pred             eEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301           93 AFELSTRT-ETMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus        93 ~f~i~~~~-~~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      +|.|.+++ +.|+|+|+|.+|+++|+.||+.++...
T Consensus        91 ~F~i~~~~~~~~~l~A~s~~e~~~Wi~aL~~~i~~~  126 (150)
T d1wg7a_          91 AFELKMQDKSSYLLAADSEVEMEEWITILNKILQLN  126 (150)
T ss_dssp             EEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCeEEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence            99999876 789999999999999999999998743

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.1e-20  Score=120.03  Aligned_cols=97  Identities=25%  Similarity=0.487  Sum_probs=72.6

Q ss_pred             ceEEEEEEe----------CCCCCCceeEEEEEECCeEEEEecCCCC-CCCCcceEEeCCceEEeecCcccCCCcceEEE
Q 032301           28 ERSGWLTKQ----------GEYIKTWRRRWFVLKQGKLFWFKESTVT-RASKPRGVIPVASCLTVKGAEDVLNKQYAFEL   96 (143)
Q Consensus        28 ~~~G~L~k~----------~~~~~~w~~r~~vL~~~~l~~~~~~~~~-~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i   96 (143)
                      .++|||+++          +...+.|++|||||.++.|+||+++... ....|.+.|+|.+|.+. ..++..+++++|.|
T Consensus         2 ~KeG~L~~k~~~~~~~kk~~~~~k~Wkkr~fvL~~~~L~~y~~~~~~~~~~~~~~~i~L~~~~v~-~~~~~~~r~~~F~i   80 (133)
T d2j59m1           2 AKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLID-ISYSETKRKNVFRL   80 (133)
T ss_dssp             CEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC--------CEECSSCEEE-ECSSSCSCSSEEEE
T ss_pred             CceEEEEeeccccccccccCCCCCCceEEEEEEeCCEEEEEeccccccccccccccceecceEEE-EcccccccCceeEE
Confidence            479999853          2244679999999999999999987632 23457889999998543 33444578899999


Q ss_pred             EeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301           97 STRTETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus        97 ~~~~~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                      .++++.++|+|+|+.|+.+|+.+|+.++.
T Consensus        81 ~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~  109 (133)
T d2j59m1          81 TTSDCECLFQAEDRDDMLAWIKTIQESSN  109 (133)
T ss_dssp             ECSSCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             ecCCCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999998764

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.2e-20  Score=114.73  Aligned_cols=93  Identities=27%  Similarity=0.544  Sum_probs=76.2

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECC-------eEEEEecCCC--CCCCCcceEEeCCceEEeecCcccCCCcceEEE
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQG-------KLFWFKESTV--TRASKPRGVIPVASCLTVKGAEDVLNKQYAFEL   96 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~-------~l~~~~~~~~--~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i   96 (143)
                      +++++|||.|+    +.|++|||||.+.       .|.||+++..  .....|.+.|+|..|..+.... ....+++|.|
T Consensus         1 dv~k~GyL~K~----k~WkkR~fvL~~~~~~~~~~~L~yy~~~~~~~~~~~~~~~~i~l~~~~~~~~~~-~~~~~~~f~i   75 (103)
T d1qqga1           1 DVRKVGYLRKP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRA-DSKNKHLVAL   75 (103)
T ss_dssp             CEEEEEEEECT----TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEEC-CSSCSSEEEE
T ss_pred             CcceeEEEEEc----CCCCEEEEEEecccccCCccEEEEEcchhhhhcccccccceEecceeeEEeecc-cCCCceEEEE
Confidence            46899999876    4899999999865       4899987641  2245688999999987665443 3466899999


Q ss_pred             EeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 032301           97 STRTETMYFIADSEKEKEDWINSIGRS  123 (143)
Q Consensus        97 ~~~~~~~~~~a~s~~e~~~W~~al~~~  123 (143)
                      .+++++++|+|+|++|+.+|+.||+..
T Consensus        76 ~t~~r~~~l~A~s~~e~~~Wi~al~~l  102 (103)
T d1qqga1          76 YTRDEHFAIAADSEAEQDSWYQALLQL  102 (103)
T ss_dssp             EESSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             EeCCeEEEEEcCCHHHHHHHHHHHHhh
Confidence            999999999999999999999999763

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3.5e-20  Score=118.20  Aligned_cols=113  Identities=17%  Similarity=0.302  Sum_probs=85.0

Q ss_pred             ccCCCCCCccccCCCceEEEEEEe--------CCCCCCceeEEEEEECC------eEEEEecCCCCCCCCcceEEeCCce
Q 032301           13 NQLSDYDSTEFWSNPERSGWLTKQ--------GEYIKTWRRRWFVLKQG------KLFWFKESTVTRASKPRGVIPVASC   78 (143)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~G~L~k~--------~~~~~~w~~r~~vL~~~------~l~~~~~~~~~~~~~~~~~i~l~~~   78 (143)
                      +++.+........++.++|||.++        +...+.|++|||||.++      .|.||+++.   ...|.+.|.+..+
T Consensus         4 ~~~~~~~~~~~~~~v~keG~L~~~~~~~~~~~~~~~~~WkkrwfvL~~~~~~~~~~L~yy~~~~---~~k~~g~i~l~~~   80 (136)
T d1v5ma_           4 GSSGNLAAKVELVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPK---ASRPKVSIPLSAI   80 (136)
T ss_dssp             CCCCCCCCCCCSCSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTT---SSSCSSCEETTTC
T ss_pred             CCCCccccccccceeeEEEEEEeeccccccCCCCCCCCceEEEEEEeCCcccchhhhhhhCccc---ccCcCcceecccc
Confidence            333333333455688999999764        22457899999999875      488899887   5668889998875


Q ss_pred             EEeecC--cccCCCcceEEEEeCCe-EEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301           79 LTVKGA--EDVLNKQYAFELSTRTE-TMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus        79 ~~v~~~--~~~~~~~~~f~i~~~~~-~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                      ..+...  .+...++++|.|.++++ .|+|+|+|++|+.+|+.+|+.++...+
T Consensus        81 ~~~~~~~~~~~~~~~~~F~l~t~~~~~y~f~A~s~~e~~~Wv~ai~~ai~~~~  133 (136)
T d1v5ma_          81 IEVRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVDSGP  133 (136)
T ss_dssp             CBCCCCCCSSSCCCTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHHHHSC
T ss_pred             eeeeeeccccCCCCCcEEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHhcCC
Confidence            443322  23346789999999985 589999999999999999999988554

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.4e-20  Score=111.60  Aligned_cols=95  Identities=25%  Similarity=0.499  Sum_probs=74.5

Q ss_pred             CceEEEEEEeCCCCCCceeEEEEEECCeE--EEEecCCCCCCCCcceEEeCCceEEeecCcc----cCCCcceEEEEeCC
Q 032301           27 PERSGWLTKQGEYIKTWRRRWFVLKQGKL--FWFKESTVTRASKPRGVIPVASCLTVKGAED----VLNKQYAFELSTRT  100 (143)
Q Consensus        27 ~~~~G~L~k~~~~~~~w~~r~~vL~~~~l--~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~----~~~~~~~f~i~~~~  100 (143)
                      ++++|||+++++..+.|++|||+|.++.+  +|++++.   ...+.+.+.+.++..+.....    .....++|.+.+++
T Consensus         2 v~k~G~L~k~~~~~k~WkkR~fvL~~~~~~l~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (104)
T d2i5fa1           2 IIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAG---AEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITAD   78 (104)
T ss_dssp             EEEEEEEEEECTTTCCEEEEEEEEETTTTEEEEECTTS---CSSCSEEEECTTCEEEEECC--------CCSEEEEECTT
T ss_pred             EEEEEEEEEECCCCCCcEEEEEEEECCeeEEEEEcCcc---ccCccceEeecceEEEEeccCcccccccCccEEEEECCC
Confidence            57899999998888899999999998654  3334443   567889999999866654331    23447889998776


Q ss_pred             -eEEEEEcCCHHHHHHHHHHHHHHH
Q 032301          101 -ETMYFIADSEKEKEDWINSIGRSI  124 (143)
Q Consensus       101 -~~~~~~a~s~~e~~~W~~al~~~~  124 (143)
                       +.++|+|+|++|+.+|+.||+.|+
T Consensus        79 ~~~~~~~a~s~~e~~~W~~ai~~a~  103 (104)
T d2i5fa1          79 EVHYFLQAATPKERTEWIKAIQMAS  103 (104)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCHHHHHHHHHHHHHHh
Confidence             779999999999999999999886

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=8.1e-20  Score=113.87  Aligned_cols=99  Identities=19%  Similarity=0.455  Sum_probs=77.7

Q ss_pred             cCCCceEEEEEEeCC-CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC-e
Q 032301           24 WSNPERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT-E  101 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~-~  101 (143)
                      ..+++++|||.|+++ ..+.|++|||||.++.|+||+++.     .+.+.|.+..+..+....  ...+++|.|.++. +
T Consensus         7 ~~~~i~eG~L~K~g~~~~~~WkkR~fvL~~~~L~yy~~~~-----~~~~~i~l~~~~~v~~~~--~~~~~~f~i~~~~~~   79 (119)
T d1omwa2           7 GKDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEGE-----APQSLLTMEEIQSVEETQ--IKERKCLLLKIRGGK   79 (119)
T ss_dssp             TSCCCEEEEEEECC------CEEEEEEEETTEEEEECTTS-----CCCEEEEGGGEEEEEEEE--SSSCEEEEEEETTSC
T ss_pred             CCCeEEEEEEEEECCCCCCCeEEEEEEEEcCeEEEEeccc-----ccCccceecccccccccc--ccccceEEEEcCCCc
Confidence            356899999999975 456799999999999999998765     356778888876665443  3566788888764 7


Q ss_pred             EEEEEcCCHHHHHHHHHHHHHHHHhhCC
Q 032301          102 TMYFIADSEKEKEDWINSIGRSIVQHSR  129 (143)
Q Consensus       102 ~~~~~a~s~~e~~~W~~al~~~~~~~~~  129 (143)
                      +++|+|+|.+|+.+|+.||+.|+..+..
T Consensus        80 ~~~f~a~s~~e~~~W~~al~~a~~~~~~  107 (119)
T d1omwa2          80 QFVLQCDSDPELVQWKKELRDAYREAQQ  107 (119)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999876543

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.5e-20  Score=115.20  Aligned_cols=101  Identities=25%  Similarity=0.467  Sum_probs=76.5

Q ss_pred             ccccCCCceEEEEEEeCCCCCCceeEEEEEECCeE--EEEecCCCCCCCCcceEEeCCceEEeecCc-------ccCCCc
Q 032301           21 TEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKL--FWFKESTVTRASKPRGVIPVASCLTVKGAE-------DVLNKQ   91 (143)
Q Consensus        21 ~~~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l--~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~-------~~~~~~   91 (143)
                      +...+.++++|||.|++...+.|++|||+|.++.+  +||....  ....|.+.|+|.++.+.....       ......
T Consensus         5 ~~~~~~v~k~G~L~K~~~~~k~WkkR~fvL~~~~~~~~~~~~~~--~~~~p~~~i~L~~~~i~~~~~~~~~~~~~~~~~~   82 (116)
T d1x1ga1           5 VELSGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSK--EENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQG   82 (116)
T ss_dssp             CTTCSEEEEEEEEEEECSSSSSEEEEEEEEEESSCEEEEECSSS--CCSSCSCCEESTTCCCEECCSSSSCSSCSSCCCS
T ss_pred             ccCCCCEEEEEEEEEEcCCCCCCceEEEEEECCCcEEEEecccc--ccccceeEEEcCCCEEEEecccCccccccccccc
Confidence            34456789999999998888999999999987554  3333222  245689999999875543321       112346


Q ss_pred             ceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHH
Q 032301           92 YAFELSTRT-ETMYFIADSEKEKEDWINSIGRS  123 (143)
Q Consensus        92 ~~f~i~~~~-~~~~~~a~s~~e~~~W~~al~~~  123 (143)
                      ++|.|.+++ +.++|+|+|++|+.+|++||+.+
T Consensus        83 ~~f~i~~~~~~~~~f~a~s~ee~~~Wi~ai~~~  115 (116)
T d1x1ga1          83 NLFKVITKDDTHYYIQASSKAERAEWIEAIKKL  115 (116)
T ss_dssp             SCEEECCTTCCCEEECCSSHHHHHHHHHHHHHH
T ss_pred             ceeEEEeCCCeEEEEECCCHHHHHHHHHHHHhh
Confidence            889999876 67899999999999999999876

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=8.4e-20  Score=123.96  Aligned_cols=99  Identities=17%  Similarity=0.395  Sum_probs=83.4

Q ss_pred             CCCceEEEEEEeCC----CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCc--ccCCCcceEEEEe
Q 032301           25 SNPERSGWLTKQGE----YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAE--DVLNKQYAFELST   98 (143)
Q Consensus        25 ~~~~~~G~L~k~~~----~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~--~~~~~~~~f~i~~   98 (143)
                      ..++++|||.|++.    ..+.|++|||||.++.|+||++..   ...|.+.|+|.+|..+....  ...+++++|.|.+
T Consensus       102 ~~~~k~G~L~K~~~~~~~~~~~Wkkr~fvL~~~~L~yy~~~~---~~~~~~~i~L~~~~~~~~~~~~~~~~~~~~F~i~~  178 (209)
T d1u5ea1         102 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDK---DKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICA  178 (209)
T ss_dssp             SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTT---CSSCSEEEECTTCEEEECGGGCSSTTGGGEEEEEC
T ss_pred             CCeeEEEEEEEecCCCCCccccceEEEEEEECCEEEEEecCC---CCccceEEEecceeeeeccccccccCCCcEEEEEc
Confidence            35678999999853    357899999999999999999987   56799999999986664433  2245689999999


Q ss_pred             CC-eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           99 RT-ETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        99 ~~-~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      ++ ++|+|+|+|.+++.+|+.||+.++..
T Consensus       179 ~~~r~~~f~a~s~~e~~~Wi~al~~~i~~  207 (209)
T d1u5ea1         179 PDKRIYQFTAASPKDAEEWVQQLKFILQD  207 (209)
T ss_dssp             SSSCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence            76 79999999999999999999999874

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=4.3e-19  Score=111.40  Aligned_cols=101  Identities=17%  Similarity=0.413  Sum_probs=77.4

Q ss_pred             CCceEEEEEEeC-CCCCCceeEEEEEE--CCeEEEEecCCCCC--CCCcceEEeCCceEEeecCc--ccCCCcceEEEEe
Q 032301           26 NPERSGWLTKQG-EYIKTWRRRWFVLK--QGKLFWFKESTVTR--ASKPRGVIPVASCLTVKGAE--DVLNKQYAFELST   98 (143)
Q Consensus        26 ~~~~~G~L~k~~-~~~~~w~~r~~vL~--~~~l~~~~~~~~~~--~~~~~~~i~l~~~~~v~~~~--~~~~~~~~f~i~~   98 (143)
                      ...++|||++++ ...+.|++|||||.  ++.|.||+++....  ...+++.+.+..+..+....  ......++|.+.+
T Consensus        14 ~~~~~GyL~k~~~~~~k~WkrRwFvL~~~~~~L~yy~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (126)
T d1v5pa_          14 QNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINA   93 (126)
T ss_dssp             CCCEECCEEEECTTCSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCSSEEEEEC
T ss_pred             CCceeeeEEEECCCCCCCeeEEEEEEEcCCCeEEEeeccccccccceeecccceeeeeeccccccccccccccceEEEcC
Confidence            347899999886 45678999999995  67899998876321  23456777777655443322  2234578999999


Q ss_pred             CCeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           99 RTETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        99 ~~~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      +.+.|+|+|+|++|+.+|+.||+.|+..
T Consensus        94 ~~r~~~l~Aes~~e~~~Wi~aL~~A~~~  121 (126)
T d1v5pa_          94 LSQRYFLQANDQKDLKDWVEALNQASKS  121 (126)
T ss_dssp             SSCEEEEECSSHHHHHHHHHHHHHTTTT
T ss_pred             CCeeEEEECCCHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999988653

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.8e-20  Score=114.30  Aligned_cols=100  Identities=25%  Similarity=0.469  Sum_probs=74.5

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECC-eEEEEecCCCCCCCCcceEEeCCceEEeecC--cccCCCcceEEEEeCC--
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQG-KLFWFKESTVTRASKPRGVIPVASCLTVKGA--EDVLNKQYAFELSTRT--  100 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~-~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~--~~~~~~~~~f~i~~~~--  100 (143)
                      .++++|||+|+++..+.|++|||||.++ .++||+++.   ...+.+.++|..+..+...  .....++++|.|....  
T Consensus         6 ~v~k~G~L~K~~~~~k~Wk~RwfvL~~~~~l~~~~~~~---~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~~   82 (118)
T d1unqa_           6 AIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERP---QDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWT   82 (118)
T ss_dssp             CEEEEEEEEEECSSSCCEEEEEEEEETTSEEEEESSCC---CSHHHHTSCSEEEECTTCEEEEECSSSTTEEEEEEEETT
T ss_pred             CEEEEEEEEEECCCCCCcEEEEEEEeccceeEEEeecc---CccccccccccceEEeecccccccccCCceEEEEecccc
Confidence            5789999999998889999999999865 677777665   3345555665544322111  1223567899998643  


Q ss_pred             --eEEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301          101 --ETMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus       101 --~~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                        ..++|+|+|.+|+.+|+.||+.++....
T Consensus        83 ~~~~~~f~a~s~~e~~~Wi~ai~~~~~~~~  112 (118)
T d1unqa_          83 TVIERTFHVETPEEREEWTTAIQTVADGLK  112 (118)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence              5689999999999999999999987643

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.4e-20  Score=112.51  Aligned_cols=92  Identities=20%  Similarity=0.469  Sum_probs=69.3

Q ss_pred             CCceEEEEEEeCC---CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC--
Q 032301           26 NPERSGWLTKQGE---YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT--  100 (143)
Q Consensus        26 ~~~~~G~L~k~~~---~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~--  100 (143)
                      .+.++|||.++..   ..+.|++|||||.++.|.||+...    ..+.+.++|.+|. +...++ ..+.++|.|.+++  
T Consensus         4 ~~~k~G~L~k~~~~g~~~k~W~kRwfvL~~~~L~y~~~~~----~~~~~~i~l~~~~-v~~~~~-~~~~~~f~i~~~~~~   77 (101)
T d2elba2           4 LTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARGD----VAGGLAMDIDNCS-VMAVDC-EDRRYCFQITSFDGK   77 (101)
T ss_dssp             CSCCEEEEEECSCCC----CCCEEEEEEETTEEEEECTTC----CCE----EEEECC-CCCCCC-CCSSSSSEECCCSSS
T ss_pred             CccEeEEEEEeccCCCCccccEEEEEEEeCCEEEEEccCC----cccceEEEecccc-cccccc-cCCcceEEEEeeccc
Confidence            4678999999843   356899999999999999988664    4577888888875 333332 3678999998865  


Q ss_pred             eEEEEEcCCHHHHHHHHHHHHHH
Q 032301          101 ETMYFIADSEKEKEDWINSIGRS  123 (143)
Q Consensus       101 ~~~~~~a~s~~e~~~W~~al~~~  123 (143)
                      ++++|+|+|++|+.+|+.||+.+
T Consensus        78 ~~~~l~A~s~~e~~~Wi~al~~v  100 (101)
T d2elba2          78 KSSILQAESKKDHEEWICTINNI  100 (101)
T ss_dssp             CCCCEECSSHHHHHHHHHHHHHT
T ss_pred             ceEEEECCCHHHHHHHHHHHHhc
Confidence            78999999999999999999875

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=99.81  E-value=5e-19  Score=110.55  Aligned_cols=105  Identities=20%  Similarity=0.344  Sum_probs=78.6

Q ss_pred             ccCCCceEEEEEEeCC--------CCCCceeEEEEEECCeEEEEecCCCC---CCCCcceEEeCCceEEeecCcccCCCc
Q 032301           23 FWSNPERSGWLTKQGE--------YIKTWRRRWFVLKQGKLFWFKESTVT---RASKPRGVIPVASCLTVKGAEDVLNKQ   91 (143)
Q Consensus        23 ~~~~~~~~G~L~k~~~--------~~~~w~~r~~vL~~~~l~~~~~~~~~---~~~~~~~~i~l~~~~~v~~~~~~~~~~   91 (143)
                      ..+.+.++|||.++..        ..+.|++|||||.++.|+||+++...   ....+...+.+..|.... ..+...++
T Consensus         4 ~~~g~~~eG~L~rk~~~~~~~kr~~~k~Wkkrw~vL~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   82 (123)
T d1wjma_           4 GSSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSV-AFDYRKRK   82 (123)
T ss_dssp             CCCCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEEE-CTTCSSCS
T ss_pred             CCCCCeeEEEEEEEeeccccCcccCCCCCcEEEEEEECCEEEEEecchhccccccccccccccccceeEEe-cccccccC
Confidence            3445789999987631        34689999999999999999865421   122244556677664443 33345678


Q ss_pred             ceEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301           92 YAFELSTRT-ETMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus        92 ~~f~i~~~~-~~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                      ++|.|.+.+ +.++|+|+|.+++.+|++||+.|+...+
T Consensus        83 ~~f~i~~~~~~~~~l~a~s~~e~~~Wi~aI~~a~~~~P  120 (123)
T d1wjma_          83 HVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASGP  120 (123)
T ss_dssp             SEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHCC
T ss_pred             cEEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHhcCC
Confidence            999999875 7899999999999999999999998653

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.5e-19  Score=107.39  Aligned_cols=91  Identities=18%  Similarity=0.425  Sum_probs=74.8

Q ss_pred             ceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC-eEEEEE
Q 032301           28 ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT-ETMYFI  106 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~-~~~~~~  106 (143)
                      .++|||.+.+.  +.|++|||+|.++.|+||+++..  ...|.+.++|.++.++. .++ ..++++|.+.+++ ++++|+
T Consensus         2 ~~s~yl~~~~~--~~WkkR~fvL~~~~L~yyk~~~~--~~~~~~~i~l~~~~v~~-~~~-~~~~~~f~~~~~~~~~~~l~   75 (95)
T d2cofa1           2 ETSSYLNVLVN--SQWKSRWCSVRDNHLHFYQDRNR--SKVAQQPLSLVGCEVVP-DPS-PDHLYSFRILHKGEELAKLE   75 (95)
T ss_dssp             TTCCEEEEEET--TEEEEEEEEECSSCEEEECSSTT--CSEEEEEECTTTCEEEC-CCB-TTBSCEEEEEETTEEEEEEE
T ss_pred             CcccchhhhcC--CCceEEEEEEECCEEEEEecccc--cccccccccccceEEEe-ccc-ccceecceeccccceeEEee
Confidence            35799998864  58999999999999999998753  34578999999986543 332 3668899988765 789999


Q ss_pred             cCCHHHHHHHHHHHHHHH
Q 032301          107 ADSEKEKEDWINSIGRSI  124 (143)
Q Consensus       107 a~s~~e~~~W~~al~~~~  124 (143)
                      |+|.+|+++|+.+|+.++
T Consensus        76 A~s~~e~~~Wi~~L~~~t   93 (95)
T d2cofa1          76 AKSSEEMGHWLGLLLSES   93 (95)
T ss_dssp             CSSHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            999999999999998764

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=99.79  E-value=9.6e-19  Score=106.55  Aligned_cols=94  Identities=16%  Similarity=0.367  Sum_probs=74.1

Q ss_pred             eEEEEEEeC--------CCCCCceeEEEEEECCeEEEEecCCC---CCCCCcceEEeCCceEEeecCcccCCCcceEEEE
Q 032301           29 RSGWLTKQG--------EYIKTWRRRWFVLKQGKLFWFKESTV---TRASKPRGVIPVASCLTVKGAEDVLNKQYAFELS   97 (143)
Q Consensus        29 ~~G~L~k~~--------~~~~~w~~r~~vL~~~~l~~~~~~~~---~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~   97 (143)
                      +||||.++.        ...+.|++|||+|.++.|.||+++..   .....+.+.+++.+|..... .+..+++++|.|.
T Consensus         1 ~eG~L~rk~~~~~~~kk~~~~~Wk~r~~vL~~~~L~~yk~~~~~~~~~~~~~~~~i~l~~~~~~~~-~~~~~~~~~f~i~   79 (106)
T d1btna_           1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVA-LDYKKKKHVFKLR   79 (106)
T ss_dssp             CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEEC-SSCCSSSSEEEEE
T ss_pred             CeeeEEEeeEccCCCcccCCCCCcEEEEEEECCEEEEEeChhhcccccccCcceeEEeccceeeec-cccccCcceEeec
Confidence            589999872        13357999999999999999998752   11334667899998855443 3445778999999


Q ss_pred             eCC-eEEEEEcCCHHHHHHHHHHHHHH
Q 032301           98 TRT-ETMYFIADSEKEKEDWINSIGRS  123 (143)
Q Consensus        98 ~~~-~~~~~~a~s~~e~~~W~~al~~~  123 (143)
                      +++ ++++|+|+|.+++.+|+.||+.|
T Consensus        80 ~~~~~~~~~~a~s~~e~~~W~~ai~~A  106 (106)
T d1btna_          80 LSDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             CTTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHhC
Confidence            976 78999999999999999999864

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=1.2e-17  Score=104.18  Aligned_cols=100  Identities=14%  Similarity=0.318  Sum_probs=75.3

Q ss_pred             CCceEEEEEEeCC--------CCCCceeEEEEEECCeEEEEecCCCCC-----CCCcceEEeCCceEEeecCcccCCCcc
Q 032301           26 NPERSGWLTKQGE--------YIKTWRRRWFVLKQGKLFWFKESTVTR-----ASKPRGVIPVASCLTVKGAEDVLNKQY   92 (143)
Q Consensus        26 ~~~~~G~L~k~~~--------~~~~w~~r~~vL~~~~l~~~~~~~~~~-----~~~~~~~i~l~~~~~v~~~~~~~~~~~   92 (143)
                      ...++|||+++..        ..+.|++|||||.++.|+||+++....     ...+...+.+..+.... ..+....++
T Consensus         7 ~~~~eG~L~rk~~~~~~~kk~~~~~W~kr~~vL~~~~L~yy~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~   85 (122)
T d1droa_           7 GEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEI-ASDYTKKKH   85 (122)
T ss_dssp             SSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCCCEE-CCSSSSSTT
T ss_pred             CcceEEEEEEeecccccCcccCCCCceEEEEEEeCCEEEEEcCcccccccCcccccccceEeccceEEEe-ccccccccc
Confidence            4589999998742        234799999999999999999876211     12244556666654333 233446789


Q ss_pred             eEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           93 AFELSTRT-ETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        93 ~f~i~~~~-~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      +|.|.+++ ..++|+|+|++|+.+|+.||+.++..
T Consensus        86 ~~~l~~~~~~~~~f~a~s~~d~~~Wv~al~~~~~~  120 (122)
T d1droa_          86 VLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDS  120 (122)
T ss_dssp             EEEEECSSSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred             eEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            99999987 77999999999999999999998763

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=2.7e-14  Score=90.03  Aligned_cols=107  Identities=16%  Similarity=0.254  Sum_probs=84.5

Q ss_pred             ccccCCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC
Q 032301           21 TEFWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT  100 (143)
Q Consensus        21 ~~~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~  100 (143)
                      ....+.++++|++.++....+.|+.|||+|.++.|.|++.......-.-.+.|++.++.+ ...++....++.|.|..+.
T Consensus        22 l~~~G~li~~g~~~~~~~~~~~~k~R~~fLF~~~Ll~~k~~~~~~~~~~k~~i~l~~~~v-~~~~~~~~~~~~f~i~~~~  100 (132)
T d1v61a_          22 IKTLGNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVV-NRLDEIEGSDCMFEITGST  100 (132)
T ss_dssp             STTTCCCSCEEEEEBCCSSSSCCCEEEEEECSSCEEEEECSSSSSCCEEEEEECTTTCBC-STTCSSSSSCCCEEEECSS
T ss_pred             hhhccCEEEEEEEEEEEecCCCcceEEEEEeCCEEEEEEEcCCCceeEEeeecchhhccc-cccccccCccceEEEeCCC
Confidence            344567899999999877778999999999999999998654322233467888998754 3334444678999999874


Q ss_pred             -eEEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301          101 -ETMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus       101 -~~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                       +.++|+|.|++|+++|+.+|++++....
T Consensus       101 ~~~~~l~a~s~eek~~Wv~~L~~~i~~~~  129 (132)
T d1v61a_         101 VERIVVHCNNNQDFQEWMEQLNRLTKSGP  129 (132)
T ss_dssp             SCEEEECCCCSHHHHHHHHHHHHHHTTSC
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHHHHhcCC
Confidence             7899999999999999999999986443

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=2e-10  Score=74.29  Aligned_cols=103  Identities=17%  Similarity=0.186  Sum_probs=76.7

Q ss_pred             ccCCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCC-CCCcceEEeCCceEEeecCccc-----CCCcceEEE
Q 032301           23 FWSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTR-ASKPRGVIPVASCLTVKGAEDV-----LNKQYAFEL   96 (143)
Q Consensus        23 ~~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~-~~~~~~~i~l~~~~~v~~~~~~-----~~~~~~f~i   96 (143)
                      +....+++|+|.+.+...+.|+.|||+|.++.|.+++...... .-...+.++|..+......+..     ..-+++|.|
T Consensus        23 ~~r~Li~eG~L~~~~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~y~~k~~i~L~~~~v~~~~~~~~~~~~~~~~~~f~i  102 (162)
T d2dfka2          23 RSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKL  102 (162)
T ss_dssp             TCCCEEEEEEEEEESSTTCCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEEEE
T ss_pred             cCceEEEEEEEEEEEcCCCCceeEEEEEeCCeEEEEEecCCCCCceEEccccchhhceeeecccccccccCccccceEEE
Confidence            3456799999999876667899999999999999997654211 2345678888886544332211     112578999


Q ss_pred             EeC--CeEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301           97 STR--TETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus        97 ~~~--~~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                      ..+  .+.|.|+|+|.++...|+.+|+.+..
T Consensus       103 ~~~~~~~~~~~~A~s~~eK~~W~~~l~~~~~  133 (162)
T d2dfka2         103 HNKETEEVHLFFAKKLEEKIRWLRAFREERK  133 (162)
T ss_dssp             EESSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EECCCCeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            865  36799999999999999999998754

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=1.8e-10  Score=69.64  Aligned_cols=100  Identities=16%  Similarity=0.115  Sum_probs=76.5

Q ss_pred             CceEEEEEEeCC-CCCCceeEEEEEECCeEEEEecCCC-CCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCCeEEE
Q 032301           27 PERSGWLTKQGE-YIKTWRRRWFVLKQGKLFWFKESTV-TRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTETMY  104 (143)
Q Consensus        27 ~~~~G~L~k~~~-~~~~w~~r~~vL~~~~l~~~~~~~~-~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~~~~  104 (143)
                      .+++|.|.+... ..+.-++++++|-.+.|.+.+.... ...-.....++|..+.+.+. ++....+++|.|..+.+++.
T Consensus         4 li~eG~l~~~~~~~~k~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~l~~~~v~~~-~d~~~~~n~f~i~~~~~~~~   82 (109)
T d1zc3b1           4 LVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNV-KDNPPMKDMFKLLMFPESRI   82 (109)
T ss_dssp             EEEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEEEEE-CCBTTBSSEEEEEETTEEEE
T ss_pred             EEEeeeEEEEccCCCCcceeEEEEEecCEEEEEEEcCCcceEEEeeeEEeccceEEEEe-ecccccceEEEEccCCCEEE
Confidence            578999988743 3344578899999999988875432 11223567889998755443 33446689999999999999


Q ss_pred             EEcCCHHHHHHHHHHHHHHHHhh
Q 032301          105 FIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus       105 ~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                      |+|+|.+|...|+.+|+.|+...
T Consensus        83 ~~a~s~~eK~~W~~~l~~a~~~~  105 (109)
T d1zc3b1          83 FQAENAKIKREWLEVLEETKRAL  105 (109)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998753

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.3e-09  Score=66.89  Aligned_cols=96  Identities=19%  Similarity=0.238  Sum_probs=71.1

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCC--------CCCcceEEeCCceEEeecCcccCCCcceEEE
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTR--------ASKPRGVIPVASCLTVKGAEDVLNKQYAFEL   96 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~--------~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i   96 (143)
                      ...+++|.|.+.+..    +.||++|.++.|.+.+......        .-.-...++|..+...+. .+....+++|.|
T Consensus        25 r~li~eG~l~~~~~~----k~r~~fLF~d~Li~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~-~~~~~~~~~f~i   99 (133)
T d1dbha2          25 NEFIMEGTLTRVGAK----HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDK-DDTNEYKHAFEI   99 (133)
T ss_dssp             CCEEEEEEEEETTCS----SCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEEC-CCSSSCCSEEEE
T ss_pred             cEEEEEeEEEEecCC----CeEEEEEecCeEEEEEecccccccccCCCccEEEEeeeeccccccccc-CCCcccccceeE
Confidence            457899999987532    6899999999999998654110        001246789998754443 334456889999


Q ss_pred             EeCC-eEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301           97 STRT-ETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus        97 ~~~~-~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                      ..+. ..+.|+|+|+++...|+++|..+..
T Consensus       100 ~~~~~~~~~l~a~s~~eK~~W~~~l~~~~~  129 (133)
T d1dbha2         100 ILKDENSVIFSAKSAEEKNNWMAALISLQY  129 (133)
T ss_dssp             CCTTSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             EcCCCcEEEEEECCHHHHHHHHHHHHHHHh
Confidence            8865 5799999999999999999987543

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=5.2e-09  Score=64.04  Aligned_cols=95  Identities=19%  Similarity=0.334  Sum_probs=63.1

Q ss_pred             ceEE-EEEEeCCCCCCceeEEEEEECC-eEEEEecCCCCCCCCcceEEeCCceEEeecCcc---------cCCCcceEEE
Q 032301           28 ERSG-WLTKQGEYIKTWRRRWFVLKQG-KLFWFKESTVTRASKPRGVIPVASCLTVKGAED---------VLNKQYAFEL   96 (143)
Q Consensus        28 ~~~G-~L~k~~~~~~~w~~r~~vL~~~-~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~---------~~~~~~~f~i   96 (143)
                      .++| .|.|-+. .+.++.|||+|..+ .+.+|.+.... ...+.+.|+|+.+..|.....         ......+|+|
T Consensus        11 l~~G~~l~K~~~-~~~~k~R~f~L~~d~~~i~~~~~~~~-~~~~~~~i~i~~I~~V~~G~~s~~~~~~~~~~~~~~~FsI   88 (119)
T d1maia_          11 LLKGSQLLKVKS-SSWRRERFYKLQEDCKTIWQESRKVM-RSPESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSI   88 (119)
T ss_dssp             HHHCEEEEEESS-SSCEEEEEEEECTTSSEEEECCCCTT-CCTTTTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEE
T ss_pred             HHcCCeEEEeCC-CCCCEEEEEEEcCCCCEEEEeCCCCC-CCccceEEEHHHceEEEcCCCCchhhhcccCCCcCceEEE
Confidence            4456 4555542 22346799999754 45566554321 234568899998766654321         1122578999


Q ss_pred             Ee--CCeEEEEEcCCHHHHHHHHHHHHHHH
Q 032301           97 ST--RTETMYFIADSEKEKEDWINSIGRSI  124 (143)
Q Consensus        97 ~~--~~~~~~~~a~s~~e~~~W~~al~~~~  124 (143)
                      ..  ..+++.|.|+|.++++.|+.+|+..+
T Consensus        89 v~~~~~r~l~l~a~s~~~~~~Wv~~L~~L~  118 (119)
T d1maia_          89 VFKDQRNTLDLIAPSPADAQHWVQGLRKII  118 (119)
T ss_dssp             EESSSCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEcCCCcEEEEEECCHHHHHHHHHHHHHHh
Confidence            85  44789999999999999999998765

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.1e-08  Score=64.36  Aligned_cols=99  Identities=16%  Similarity=0.086  Sum_probs=69.0

Q ss_pred             CCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCC----------C----CCcceEEeCCceEEeecCcccCCC
Q 032301           25 SNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTR----------A----SKPRGVIPVASCLTVKGAEDVLNK   90 (143)
Q Consensus        25 ~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~----------~----~~~~~~i~l~~~~~v~~~~~~~~~   90 (143)
                      ...+++|.|.+....    +.+|+.|.++.|.|.+......          .    ......+.+..+.+.+. .+....
T Consensus        23 R~li~eG~L~k~~~~----k~r~~FLFnD~Ll~tK~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~~~-~d~~~~   97 (142)
T d1ki1b2          23 RKFLHSGKLYKAKNN----KELYGFLFNDFLLLTQITKPLGSSGTDKVFSPKSNLQYMYKTPIFLNEVLVKLP-TDPSGD   97 (142)
T ss_dssp             CCEEEECCCBCSSSC----CCCEEEEESSEEEEEEEECC-------CCSCSSCCEEEECSSCEEGGGEEEECC-SSSCCC
T ss_pred             eEEEEeeEEEEecCC----CEEEEEEecCEEEEEEeccccceeccccccccCCceeEEEEcccchhhheeecc-CCcccc
Confidence            457899999876322    5899999999999987543100          0    01234567777644333 333355


Q ss_pred             cceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301           91 QYAFELSTRTETMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus        91 ~~~f~i~~~~~~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                      .+.|.+..+.+.+.|+|+|++|...|+.+|+.|+....
T Consensus        98 ~~~~~~~~~~~~~~l~a~s~~ek~~W~~~I~~Ai~~~~  135 (142)
T d1ki1b2          98 EPIFHISHIDRVYTLRAESINERTAWVQKIKAASELYI  135 (142)
T ss_dssp             ---CEEEETTEEEECBCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEecCCCEEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence            67888888999999999999999999999999998653

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2e-07  Score=56.80  Aligned_cols=101  Identities=17%  Similarity=0.134  Sum_probs=70.0

Q ss_pred             cCCCceEEEEEEeCC--CCCCceeEEEEEECCeEEEEecCCCCC---CCCcceEEeCCceEEeecCcccCCCcceEEEEe
Q 032301           24 WSNPERSGWLTKQGE--YIKTWRRRWFVLKQGKLFWFKESTVTR---ASKPRGVIPVASCLTVKGAEDVLNKQYAFELST   98 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~--~~~~w~~r~~vL~~~~l~~~~~~~~~~---~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~   98 (143)
                      .+..+++|.|....+  ..+..+.||+.|-++.|.+.+......   .......+.+..+...+. .  ...++.|.|..
T Consensus        10 ~G~Ll~~g~l~v~~~~~~~~k~~~R~~FLF~d~Ll~~K~k~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~f~i~~   86 (121)
T d1ntya2          10 QGELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEH-V--EGDPCKFALWV   86 (121)
T ss_dssp             GCCEEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTTCCEEEEEEEEEEGGGEEEECC-C--TTCTTEEEEEE
T ss_pred             CCcEEEEeEEEEEcccccCCCCcEEEEEeeCCeEEEEEEecCCCCCceeEEEeeEEecceEEEEc-C--CCCCceEEEEE
Confidence            456789999986532  345679999999999999987533110   112344566666533322 2  24567888864


Q ss_pred             -----CCeEEEEEcCCHHHHHHHHHHHHHHHHhh
Q 032301           99 -----RTETMYFIADSEKEKEDWINSIGRSIVQH  127 (143)
Q Consensus        99 -----~~~~~~~~a~s~~e~~~W~~al~~~~~~~  127 (143)
                           ....+.|+|.|+++...|+.+|+.++...
T Consensus        87 ~~~~~~~~~~~l~a~s~~eK~~W~~~I~~~i~eq  120 (121)
T d1ntya2          87 GRTPTSDNKIVLKASSIENKQDWIKHIREVIQER  120 (121)
T ss_dssp             SSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred             ecCCCCceEEEEECCCHHHHHHHHHHHHHHHHhh
Confidence                 23568999999999999999999998753

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.8e-06  Score=53.73  Aligned_cols=96  Identities=11%  Similarity=0.130  Sum_probs=65.0

Q ss_pred             CCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCCC---------------CCcceEEeCCceEEeecCcccCCC
Q 032301           26 NPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTRA---------------SKPRGVIPVASCLTVKGAEDVLNK   90 (143)
Q Consensus        26 ~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~~---------------~~~~~~i~l~~~~~v~~~~~~~~~   90 (143)
                      ..+++|.|..+. ..+..+.++++|..+.|.+.+.......               ......+.+... .+...   ...
T Consensus        24 ~Li~eG~L~~k~-~~~k~k~r~~FLF~D~Ll~tk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~---~~~   98 (140)
T d1xcga2          24 KMIHEGPLTWRI-SKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAV-LIRSV---ATD   98 (140)
T ss_dssp             CEEEEEEEEECC-SSSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGE-EEEEC---SSC
T ss_pred             eEEEEeeEEEEe-cCCCceEEEEEEecCeEEEEEecccceeeccccccccccccceeeecceEecceE-EEecC---CCC
Confidence            468999997543 2357789999999999999876542100               011123444442 22222   234


Q ss_pred             cceEEEEeC-----CeEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           91 QYAFELSTR-----TETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        91 ~~~f~i~~~-----~~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                      +++|.+...     ...+.|+|.|++|..+|+.+|+.|+..
T Consensus        99 ~~~f~li~~~~~~~~~~~~l~A~s~~eK~~Wi~~i~~aI~n  139 (140)
T d1xcga2          99 KRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN  139 (140)
T ss_dssp             SSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCceEEEEEcCCHHHHHHHHHHHHHHHHc
Confidence            577887652     367999999999999999999999875

>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=98.55  E-value=3e-06  Score=51.00  Aligned_cols=94  Identities=17%  Similarity=0.153  Sum_probs=64.7

Q ss_pred             ceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCC---------------CCCcceEEeCCceEEeecCcccCCCcc
Q 032301           28 ERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTR---------------ASKPRGVIPVASCLTVKGAEDVLNKQY   92 (143)
Q Consensus        28 ~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~---------------~~~~~~~i~l~~~~~v~~~~~~~~~~~   92 (143)
                      +++|.|..+.. .+.-+.|++.|-.+.|.+.+......               .......+.++.....+...   ..+.
T Consensus         2 i~eG~L~~~~~-~~k~~er~vFLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~e~~~---d~~~   77 (114)
T d1txda2           2 IHEGPLVWKVN-RDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVAT---DNKA   77 (114)
T ss_dssp             EEEEEEEEESS-SSCBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEECCC----CCE
T ss_pred             ceeeeEEEEec-CCCceEEEEEEecCeEEEEEecccccccccccccccccccceeeecCcEEcccEEEEEcCC---CCCC
Confidence            68999975542 34557899999999998887544210               01123467777753333222   3467


Q ss_pred             eEEEEeCC---eEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301           93 AFELSTRT---ETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus        93 ~f~i~~~~---~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                      .|.|.+.+   ..|.|+|.|.++.+.|+.+|+.++.
T Consensus        78 ~fli~~~~~~~~~y~l~A~s~~eK~~W~~~I~~~~~  113 (114)
T d1txda2          78 LFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAA  113 (114)
T ss_dssp             EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCCceEEEEEcCCHHHHHHHHHHHHHHhc
Confidence            78888654   4689999999999999999999875

>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=5e-06  Score=52.23  Aligned_cols=101  Identities=12%  Similarity=0.162  Sum_probs=65.8

Q ss_pred             cCCCceEEEEEEeCC-----------CCCCceeEEEEEECCeEEEEecCCCCC-C--C----CcceEEeCCceEEeecCc
Q 032301           24 WSNPERSGWLTKQGE-----------YIKTWRRRWFVLKQGKLFWFKESTVTR-A--S----KPRGVIPVASCLTVKGAE   85 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~-----------~~~~w~~r~~vL~~~~l~~~~~~~~~~-~--~----~~~~~i~l~~~~~v~~~~   85 (143)
                      .+..+++|.+..-.+           ..+.-+.|||.|..+.|.+.+...... .  .    .-...+.+... .+....
T Consensus        10 ~G~Ll~qg~~~v~~~~~~~~~~~~~~~~~K~~~R~~FLF~~~Li~cK~~~~~~~~~~~~~~y~~k~~~~~~~~-~v~~~~   88 (147)
T d1kz7a2          10 LGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAV-GITENV   88 (147)
T ss_dssp             GCCEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGE-EEECCB
T ss_pred             cCCEEEeeeEEEEecCccchhhhhhhhccCCceEEEEEecCcEEEEEecccCCcccccCceEEEeeEEecCCc-eeEecC
Confidence            456788999975311           223458999999999999998643210 0  1    12345666664 333333


Q ss_pred             ccCCCcceEEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301           86 DVLNKQYAFELSTRTETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus        86 ~~~~~~~~f~i~~~~~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                      +.....+.|.+..+...+.|+|.|.++...|+.+|+.++.
T Consensus        89 ~~~~~~f~~~~~~~~~~~~l~a~s~eeK~~W~~~I~~~l~  128 (147)
T d1kz7a2          89 KGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLT  128 (147)
T ss_dssp             TTBTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCcceEEEEeCCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            2222333444445668899999999999999999998775

>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Alpha-1-syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=2.1e-05  Score=45.44  Aligned_cols=92  Identities=15%  Similarity=0.218  Sum_probs=72.2

Q ss_pred             CceEEEEEEeCC-----CCCCceeEEEEEECCeEEEEecCCCCCCCCcceEEeCCceEEeecCcccCCCcceEEEEeCC-
Q 032301           27 PERSGWLTKQGE-----YIKTWRRRWFVLKQGKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRT-  100 (143)
Q Consensus        27 ~~~~G~L~k~~~-----~~~~w~~r~~vL~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~-  100 (143)
                      ..+.|.|..+.+     ....|.+-..-|..+.|.+....       -...|+|.=|...............|.|..++ 
T Consensus         6 a~rsGlLE~~~~~~~~~~~~rW~rVl~~L~ed~Lt~s~~~-------d~k~IPLKmcyvtR~~~~~D~EnR~lElhSpDG   78 (105)
T d2adza1           6 APRTGLLELRCGAGSGAGGERWQRVLLSLAEDALTVSPLS-------EAKHVSLKMAYVSRRCTPTDPEPRYLEICAADG   78 (105)
T ss_dssp             CCEEEEEEECCCCSSSSSCCCCEEEEEEEETTEEEEESSC-------SCEEEETTTCEEEEECCSSCCSSCEEEEEETTT
T ss_pred             CCccceEEEeeccCCCccccceeeeeeecccceEEeeccc-------ccceeeeeeEEeeecccCCCCcccEEEEECCCC
Confidence            468899998732     24579999999999999886433       36788888776665544444667899999998 


Q ss_pred             -eEEEEEcCCHHHHHHHHHHHHHHHH
Q 032301          101 -ETMYFIADSEKEKEDWINSIGRSIV  125 (143)
Q Consensus       101 -~~~~~~a~s~~e~~~W~~al~~~~~  125 (143)
                       .+.+|.|.|..+++.|..||+..+.
T Consensus        79 ~~t~iLR~kD~a~A~~WF~Aihs~i~  104 (105)
T d2adza1          79 QDAVFLRAKDEASARSWAGAIQAQIG  104 (105)
T ss_dssp             TEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred             CceEEEEcCCHHHHHHHHHHHHHhhc
Confidence             6789999999999999999998764

>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: UNC-89
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.06  E-value=2.9e-05  Score=46.95  Aligned_cols=100  Identities=11%  Similarity=0.097  Sum_probs=69.0

Q ss_pred             cCCCceEEEEEEeCCCCCCceeEEEEEECCeEEEEecCCCCC--CCCcceEEeCCceEEeecCcccCCCcceEEEEeCCe
Q 032301           24 WSNPERSGWLTKQGEYIKTWRRRWFVLKQGKLFWFKESTVTR--ASKPRGVIPVASCLTVKGAEDVLNKQYAFELSTRTE  101 (143)
Q Consensus        24 ~~~~~~~G~L~k~~~~~~~w~~r~~vL~~~~l~~~~~~~~~~--~~~~~~~i~l~~~~~v~~~~~~~~~~~~f~i~~~~~  101 (143)
                      .+..++.|++....+. +.-+.|+++|..+.|.|++......  .-.-...|.|+.+...+..    .....|.|...+.
T Consensus         7 ~G~ll~~~~f~v~~~~-~k~k~R~vFLF~~~ll~~K~~~~~~~~~y~~K~~i~l~~~~v~e~~----gd~~~F~i~~~~~   81 (119)
T d1fhoa_           7 LGRIIRHDAFQVWEGD-EPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQHT----TDEDTIVLQPQEP   81 (119)
T ss_dssp             CCCSSEEEEEEECSTT-CSCEEEEEEEETTEEEEEEECCSSSSCCCSSCCEEESSSCEEEEEC----TTCCEEEEECCST
T ss_pred             CCceEEEeEEEEEeCC-CCceEEEEEEEcCeEEEEEeccCCCCceEEEecEEECCceEEEEcC----CCCcEEEEEeCCC
Confidence            4567889998886543 3456789999999999987654211  1235688999986444332    3346788875431


Q ss_pred             -------EEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301          102 -------TMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus       102 -------~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                             ++.++|.|+++...|+++|..++.+..
T Consensus        82 ~~~~~~~~~~~~a~s~~~K~~Wv~~I~e~~~~~~  115 (119)
T d1fhoa_          82 GLPSFRIKPKDFETSEYVRKAWLRDIAEEQEKYA  115 (119)
T ss_dssp             TCCCBCCCCCSSSSCSHHHHHHHHHHHTCCHHHH
T ss_pred             CCCcceEEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence                   355668999999999999987766543

>d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.58  E-value=0.22  Score=29.68  Aligned_cols=93  Identities=9%  Similarity=0.059  Sum_probs=58.4

Q ss_pred             ceEEEEEEe-CCCCCCceeEEEEEEC--CeEEEEecCCCCCCCCcceEEeCCceEEeecCccc-----------------
Q 032301           28 ERSGWLTKQ-GEYIKTWRRRWFVLKQ--GKLFWFKESTVTRASKPRGVIPVASCLTVKGAEDV-----------------   87 (143)
Q Consensus        28 ~~~G~L~k~-~~~~~~w~~r~~vL~~--~~l~~~~~~~~~~~~~~~~~i~l~~~~~v~~~~~~-----------------   87 (143)
                      +.+|-...+ ......-+.+.|.|..  ..|+| .++.     .....+++..+..+......                 
T Consensus         7 L~~G~~f~K~~~~~~~~~~~~frlD~~g~~L~W-~~~~-----k~~~~l~i~~I~evR~G~~~~~~k~~kl~~~~~~~~~   80 (131)
T d2zkmx3           7 LSQGERFIKWDDETTVASPVILRVDPKGYYLYW-TYQS-----KEMEFLDITSIRDTRFGKFAKMPKSQKLRDVFNMDFP   80 (131)
T ss_dssp             HHHCEEEEEECTTTCCEEEEEEEECTTSCEEEE-EETT-----SCEEEEEGGGEEEEEEGGGSCCCCSHHHHHHTTCSST
T ss_pred             HhCCCeEEEEcCCCCccceEEEEECCCCCEEEE-ECCC-----CceeEEEecceeeEEeccccCCccHHHHhhhhhccCc
Confidence            344544433 3334456677777763  34444 3332     13567888876666543110                 


Q ss_pred             --CCCcceEEEEeCC-----eEEEEEcCCHHHHHHHHHHHHHHHHh
Q 032301           88 --LNKQYAFELSTRT-----ETMYFIADSEKEKEDWINSIGRSIVQ  126 (143)
Q Consensus        88 --~~~~~~f~i~~~~-----~~~~~~a~s~~e~~~W~~al~~~~~~  126 (143)
                        .....+|.|....     +.+.|-|.|.++++.|+..|+..+..
T Consensus        81 ~~~~e~~~ftIvyg~~~v~l~~l~lVA~s~~~a~~W~~gL~~L~~n  126 (131)
T d2zkmx3          81 DNSFLLKTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALVKH  126 (131)
T ss_dssp             TCCGGGTEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHHHC
T ss_pred             CCCccccEEEEEECCCcccceEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence              0123599999853     67889999999999999999988763

>d1foea2 b.55.1.1 (A:1240-1401) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.75  E-value=0.38  Score=29.36  Aligned_cols=86  Identities=14%  Similarity=0.224  Sum_probs=57.0

Q ss_pred             CceeEEEEEECCeEEEEecCCCCCCC-------------C---cceEEeCCceEEeecCc-ccCCCcceEEEEeC-----
Q 032301           42 TWRRRWFVLKQGKLFWFKESTVTRAS-------------K---PRGVIPVASCLTVKGAE-DVLNKQYAFELSTR-----   99 (143)
Q Consensus        42 ~w~~r~~vL~~~~l~~~~~~~~~~~~-------------~---~~~~i~l~~~~~v~~~~-~~~~~~~~f~i~~~-----   99 (143)
                      .-.---||++...+..|+.....+..             +   -...|+++.. .|.... ......+.+.|++.     
T Consensus        49 ~pel~~FVFK~AVV~vcke~sk~KkKl~~~~~~~~~~e~d~~rFr~mIP~~al-QVR~~~~~~~es~~vwEiiH~kSe~e  127 (162)
T d1foea2          49 EPELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEAL-QVRALPSADAEANAVCEIVHVKSESE  127 (162)
T ss_dssp             SCEEEEEEETTEEEEEECCCCCSCCSSCCCTTTTCSSCSCSCCCEEEEEGGGE-EEECCCCTTTTSCCEEEEEECCBTGG
T ss_pred             CCcEEEEEecceEEEEEcccchhhhhccCccccccccccCceeEEEEeeeeee-EeecccccCCCcceEEEEEeeccccc
Confidence            33445588888888888875421111             1   1236777664 333332 22355788888872     


Q ss_pred             ---CeEEEEEcCCHHHHHHHHHHHHHHHHhhC
Q 032301          100 ---TETMYFIADSEKEKEDWINSIGRSIVQHS  128 (143)
Q Consensus       100 ---~~~~~~~a~s~~e~~~W~~al~~~~~~~~  128 (143)
                         ...|.|++.+.+....-+.+|+..+..+.
T Consensus       128 gRpE~vfqlc~St~E~K~~flK~Ir~ilre~~  159 (162)
T d1foea2         128 GRPERVFHLCCSSPESRKDFLKSVHSILRDKH  159 (162)
T ss_dssp             GBCCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence               36799999999999999999999887543