Citrus Sinensis ID: 032341

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGYSVVILILKPMNRRFSCYSSLLNILYFADQN
Secondary Structure (PSIPRED)
cccccEEEEEEEcccEEEEEEEcccccHHHHHHHHHccccccccEEEEEEccEEEEEEEEccEEEEEEEccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcHHHcccccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEcccEEEEEEccccccHHHHHHHHHHHcccccccEEEEcccEEEEEEEcccEEEEEEEccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHcEEEEcccc
Coil and Loop (DISEMBL)
MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLqklpasnnkftyncdahtfnylvdngYTYCVVadessgrqipmAFLERVKDEfvskygggkaatapanglnkefGYSVVILILKPMNRRFSCYSSLLNILYFADQN
Flexible Loop (DISEMBL)
MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGkaatapanglnkEFGYSVVILILKPMNRRFSCYSSLLNILYFADQN
Low Complexity Region (SEG)
MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGYSVVILILKPMNRRFSCYSSLLNILYFADQN
Disordered region (IsUnstruct)
*****LIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGYSVVILILKPMNRRFSCYSSLLNILYFA***
Disordered Region (DISOPRED)
**QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG******AP**GLNKEFGYSVVI*******************LYF****
Disordered Region (DISEMBL)
MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGYSVVILILKPMNRRFSCYSSLLNILYFADQN
Disordered Region (DISPRO)
**QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGYSVVILILKPMNRRFSCYSSLLNILYFA***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGYSVVILILKPMNRRFSCYSSLLNILYFADQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
Q9MAS5	220	Putative vesicle-associat	yes	no	0.781	0.504	0.783	4e-49
P47192	221	Vesicle-associated membra	no	no	0.781	0.502	0.774	2e-48
Q9ZTW3	219	Vesicle-associated membra	no	no	0.781	0.506	0.756	7e-48
O48850	285	Vesicle-associated membra	no	no	0.781	0.389	0.756	1e-47
Q8VY69	217	Vesicle-associated membra	no	no	0.781	0.511	0.684	1e-41
O23429	222	Vesicle-associated membra	no	no	0.781	0.5	0.696	2e-41
Q9M376	240	Vesicle-associated membra	no	no	0.654	0.387	0.655	6e-34
Q86AQ7	260	Vesicle-associated membra	yes	no	0.760	0.415	0.431	3e-19
O49377	219	Vesicle-associated membra	no	no	0.739	0.479	0.420	8e-17
Q9LFP1	221	Vesicle-associated membra	no	no	0.746	0.479	0.403	4e-16

>sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=3 SV=2

 Score =  192 bits (489), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 87/111 (78%), Positives = 98/111 (88%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M Q+SLIY+FVARG V+LAEYTEF GNF S+A QCLQKLP+SNNKFTYNCD HTFNYL D
Sbjct: 1   MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLAD 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
           NG+TYCVV  ES+GRQIPMAFLERVK++F  +YGGGKA+TA AN LNKEFG
Sbjct: 61  NGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFG 111

Involved in the targeting and/or fusion of transport vesicles to their target membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|P47192|VA722_ARATH Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2

 Score =  190 bits (483), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 86/111 (77%), Positives = 100/111 (90%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M+Q+SLIY+FVARG V+L E+T+F GNF SIA QCLQKLP+SNNKFTYNCD HTFNYLV+
Sbjct: 1   MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
           NG+TYCVVA +S+GRQIPMAFLERVK++F  +YGGGKAATA AN LNKEFG
Sbjct: 61  NGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFG 111

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZTW3|VA721_ARATH Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=1 SV=1

 Score =  188 bits (478), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 84/111 (75%), Positives = 100/111 (90%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M+Q+SLIY+FVARG V+L E+T+F GNF SIA QCLQKLP+SNNKFTYNCD HTFNYLV+
Sbjct: 1   MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
           +G+TYCVVA +S+GRQIPM+FLERVK++F  +YGGGKAATA AN LNKEFG
Sbjct: 61  DGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFG 111

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|O48850|VA725_ARATH Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2

 Score =  188 bits (477), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 84/111 (75%), Positives = 97/111 (87%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M Q++LIY+FVARG V+L EYTEF GNF ++A QCLQKLP+SNNKFTYNCD HTFNYLV+
Sbjct: 66  MGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 125

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
           NG+TYCVVA ES GRQIPMAFLERVK++F  +YGGGKA TA AN LN+EFG
Sbjct: 126 NGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFG 176

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY69|VA723_ARATH Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1

 Score =  168 bits (425), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 94/111 (84%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M+Q+SL Y+F+ARG V+L E+T+F GNF S+A Q L+ LP+SNNKFTYNCD HTFN LV+
Sbjct: 1   MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVE 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
           NG+TYCVVA +S+GR+IPMAFLERVK++F  +YGG KAAT  AN LNKEFG
Sbjct: 61  NGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFG 111

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|O23429|VA724_ARATH Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2

 Score =  167 bits (422), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 78/112 (69%), Positives = 94/112 (83%), Gaps = 1/112 (0%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNN-KFTYNCDAHTFNYLV 59
           M Q+S IY+FVARG ++LAEYTEF+GNF SIA QCLQKLP+S+N KFTYNCD HTFN+LV
Sbjct: 1   MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLV 60

Query: 60  DNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
           ++GY YCVVA +S  +QI +AFLERVK +F  +YGGGKA+TA A  LNKEFG
Sbjct: 61  EDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFG 112

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M376|VA727_ARATH Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1

 Score =  142 bits (358), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 61/93 (65%), Positives = 80/93 (86%)

Query: 1  MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
          MSQK LIY+FVA+G VVLAE+T +SGNF++IA QCLQKLP +++K+TY+CD HTFN+LVD
Sbjct: 1  MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVD 60

Query: 61 NGYTYCVVADESSGRQIPMAFLERVKDEFVSKY 93
          NG+ + VVADES+GR +P  FLERVK++F  +Y
Sbjct: 61 NGFVFLVVADESTGRSVPFVFLERVKEDFKKRY 93

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q86AQ7|VAM7B_DICDI Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 70/109 (64%), Gaps = 1/109 (0%)

Query: 6   LIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTY 65
           +IY+ VARG+ VLAE+T  +GNF +I  + L  +P ++ K +Y  + + F+YLV +  TY
Sbjct: 3   IIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTY 62

Query: 66  CVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGYSV 114
             +ADE  GR+IP  FL+ VK+ F S Y G K  TA A G+N +F  ++
Sbjct: 63  LCMADEEFGRRIPFTFLDDVKNRFKSMY-GDKGKTAIAYGMNSDFSRTL 110

Involved in the targeting and/or fusion of transport vesicles to their target membrane during transport of proteins from the early endosome to the lysosome. Required for heterotypic fusion of late endosomes with lysosomes and homotypic lysosomal fusion.

Dictyostelium discoideum (taxid: 44689)

>sp|O49377|VA711_ARATH Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 2/107 (1%)

Query: 5   SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNK-FTYNCDAHTFNYLVDNGY 63
           +++YA VARG VVL+E+T  S N ++IA Q L+K+P  N+   +Y+ D + F+    +G 
Sbjct: 2   AILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGL 61

Query: 64  TYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEF 110
           T   +A+E++GR+IP AFLE +   FV  YG     TA A  +N+EF
Sbjct: 62  TVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRA-VHTALAYAMNEEF 107

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFP1|VA713_ARATH Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 67/109 (61%), Gaps = 3/109 (2%)

Query: 5   SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPA--SNNKFTYNCDAHTFNYLVDNG 62
           ++I+A VARG VVL+E++  S N +SI+ Q L+KLP   S++  +Y+ D + F+    +G
Sbjct: 2   AIIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDG 61

Query: 63  YTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
            T   +ADE++GR IP AFL+ +   FV  YG     +A A  +N EF 
Sbjct: 62  LTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRA-IHSAQAYSMNDEFS 109

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
356532974	221	PREDICTED: putative vesicle-associated m	0.781	0.502	0.918	2e-55
427199312	219	vesicle-associated membrane protein 72 [	0.781	0.506	0.891	6e-55
255638090	221	unknown [Glycine max]	0.781	0.502	0.909	8e-55
351727010	221	uncharacterized protein LOC100500089 [Gl	0.781	0.502	0.900	2e-54
224115526	221	predicted protein [Populus trichocarpa]	0.781	0.502	0.873	1e-53
224136560	219	predicted protein [Populus trichocarpa]	0.781	0.506	0.864	8e-53
356532978	232	PREDICTED: putative vesicle-associated m	0.781	0.478	0.827	1e-52
449455429	222	PREDICTED: putative vesicle-associated m	0.781	0.5	0.846	2e-52
388496790	226	unknown [Lotus japonicus]	0.774	0.486	0.845	9e-52
225423676	221	PREDICTED: putative vesicle-associated m	0.774	0.497	0.836	1e-51

>gi|356532974|ref|XP_003535044.1| PREDICTED: putative vesicle-associated membrane protein 726-like isoform 1 [Glycine max]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 102/111 (91%), Positives = 107/111 (96%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M QKSLIYAFV+RG V+LAEYTEFSGNFNSIA+QCLQKLPA+NNKFTYNCDAHTFNYLVD
Sbjct: 1   MGQKSLIYAFVSRGTVILAEYTEFSGNFNSIAFQCLQKLPATNNKFTYNCDAHTFNYLVD 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
           NGYTYCVVADES GRQ+PMAFLERVKDEFVSKYGGGKAATAPAN LNKEFG
Sbjct: 61  NGYTYCVVADESIGRQLPMAFLERVKDEFVSKYGGGKAATAPANSLNKEFG 111

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|427199312|gb|AFY26886.1| vesicle-associated membrane protein 72 [Morella rubra]

 Score =  218 bits (555), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 99/111 (89%), Positives = 107/111 (96%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           MSQK LIYAFV+RG VVLAEYTEFSGNFNSIAYQCLQKLPA+NNKFTYNCD HTFNYLVD
Sbjct: 1   MSQKPLIYAFVSRGTVVLAEYTEFSGNFNSIAYQCLQKLPATNNKFTYNCDGHTFNYLVD 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
           NGYTYCVVADES GRQ+PMAFLER+KD+F+S+YGGGKA+TAPANGLNKEFG
Sbjct: 61  NGYTYCVVADESVGRQVPMAFLERIKDDFLSRYGGGKASTAPANGLNKEFG 111

Source: Morella rubra

Species: Morella rubra

Genus: Morella

Family: Myricaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638090|gb|ACU19359.1| unknown [Glycine max]

 Score =  218 bits (554), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 101/111 (90%), Positives = 106/111 (95%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M QKSLIYAFV+RG V+LAEYTEFSGNFNSIA+QCLQKLPA+NNKFTYNCDAHTFNYLVD
Sbjct: 1   MGQKSLIYAFVSRGTVILAEYTEFSGNFNSIAFQCLQKLPATNNKFTYNCDAHTFNYLVD 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
           NGYTYCVVADE  GRQ+PMAFLERVKDEFVSKYGGGKAATAPAN LNKEFG
Sbjct: 61  NGYTYCVVADEPIGRQLPMAFLERVKDEFVSKYGGGKAATAPANSLNKEFG 111

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727010|ref|NP_001236634.1| uncharacterized protein LOC100500089 [Glycine max] gi|255629069|gb|ACU14879.1| unknown [Glycine max]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/111 (90%), Positives = 106/111 (95%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M QKSLIYAFV+RG V+LAEYTEFSGNFNSIA+QCLQKLPA+NNKFTYNCDAHTFNYLVD
Sbjct: 1   MGQKSLIYAFVSRGTVILAEYTEFSGNFNSIAFQCLQKLPATNNKFTYNCDAHTFNYLVD 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
           NGYTYCVVADES GRQ+PMAFLERVKDEFV+KYGGGKAATAP N LNKEFG
Sbjct: 61  NGYTYCVVADESFGRQLPMAFLERVKDEFVAKYGGGKAATAPVNSLNKEFG 111

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115526|ref|XP_002332156.1| predicted protein [Populus trichocarpa] gi|118481984|gb|ABK92923.1| unknown [Populus trichocarpa] gi|118485253|gb|ABK94486.1| unknown [Populus trichocarpa] gi|118487184|gb|ABK95420.1| unknown [Populus trichocarpa] gi|222875206|gb|EEF12337.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (545), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/111 (87%), Positives = 107/111 (96%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M+QKSLIYAFV+RG V+LAE+TEFSGNFNSIA+QCLQKLPA+NNKFTYNCD HTFNYL D
Sbjct: 1   MNQKSLIYAFVSRGTVILAEFTEFSGNFNSIAFQCLQKLPATNNKFTYNCDGHTFNYLAD 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
           NG+TYCVVADES+GRQ+PMAFLERVKD+FVSKYGGGKAATA ANGLNKEFG
Sbjct: 61  NGFTYCVVADESAGRQVPMAFLERVKDDFVSKYGGGKAATAQANGLNKEFG 111

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136560|ref|XP_002322360.1| predicted protein [Populus trichocarpa] gi|222869356|gb|EEF06487.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (537), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 96/111 (86%), Positives = 107/111 (96%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           MSQKSLIYAFV+RG V+LA+YTEFSGNFNSIA+QCLQKLPA+NNKFTYNCD HTFNYLVD
Sbjct: 1   MSQKSLIYAFVSRGTVILADYTEFSGNFNSIAFQCLQKLPATNNKFTYNCDGHTFNYLVD 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
           NG+TYCVVA ES+GRQ+P+AFLERVKD+FV+KYGGGKAATA ANGLNKEFG
Sbjct: 61  NGFTYCVVAAESAGRQVPIAFLERVKDDFVTKYGGGKAATAQANGLNKEFG 111

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532978|ref|XP_003535046.1| PREDICTED: putative vesicle-associated membrane protein 726-like isoform 3 [Glycine max]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 101/122 (82%), Positives = 107/122 (87%), Gaps = 11/122 (9%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M QKSLIYAFV+RG V+LAEYTEFSGNFNSIA+QCLQKLPA+NNKFTYNCDAHTFNYLVD
Sbjct: 1   MGQKSLIYAFVSRGTVILAEYTEFSGNFNSIAFQCLQKLPATNNKFTYNCDAHTFNYLVD 60

Query: 61  NGY-----------TYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKE 109
           NGY           +YCVVADES GRQ+PMAFLERVKDEFVSKYGGGKAATAPAN LNKE
Sbjct: 61  NGYSMFLVLSFAVLSYCVVADESIGRQLPMAFLERVKDEFVSKYGGGKAATAPANSLNKE 120

Query: 110 FG 111
           FG
Sbjct: 121 FG 122

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455429|ref|XP_004145455.1| PREDICTED: putative vesicle-associated membrane protein 726-like [Cucumis sativus] gi|449516904|ref|XP_004165486.1| PREDICTED: putative vesicle-associated membrane protein 726-like [Cucumis sativus]

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 94/111 (84%), Positives = 105/111 (94%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M+QKSLIYAFVARG V+LAEYTE+SGNFNSIA+QCLQKLP +NNKFTYNCD HTFNYLVD
Sbjct: 1   MAQKSLIYAFVARGTVILAEYTEYSGNFNSIAFQCLQKLPTANNKFTYNCDGHTFNYLVD 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
           NGYTYCVVA ES+GRQ+P+AFLER+KD+FVSKY GGKA+TAPAN LNKEFG
Sbjct: 61  NGYTYCVVATESAGRQVPIAFLERIKDDFVSKYAGGKASTAPANSLNKEFG 111

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496790|gb|AFK36461.1| unknown [Lotus japonicus]

 Score =  207 bits (528), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 93/110 (84%), Positives = 105/110 (95%)

Query: 2   SQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN 61
           +QK LIYAFV+RG V+LAE+TEFSGNFNSIA+QCLQKLP+++NKFTYNCDAHTFN+LVDN
Sbjct: 9   NQKPLIYAFVSRGTVILAEFTEFSGNFNSIAFQCLQKLPSTSNKFTYNCDAHTFNFLVDN 68

Query: 62  GYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
           GYTYC+VADES GRQ+PMAFLERVKD+FVSKYG GKAATAPAN LNKEFG
Sbjct: 69  GYTYCIVADESVGRQVPMAFLERVKDDFVSKYGDGKAATAPANSLNKEFG 118

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423676|ref|XP_002276767.1| PREDICTED: putative vesicle-associated membrane protein 726 isoform 1 [Vitis vinifera] gi|147857290|emb|CAN81365.1| hypothetical protein VITISV_015772 [Vitis vinifera] gi|297737980|emb|CBI27181.3| unnamed protein product [Vitis vinifera]

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 92/110 (83%), Positives = 104/110 (94%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M QKSLIYAFVARG V+LAEYTEFSGNFNSIA+QCLQKLPA++NKFTYNCDAHTF YL+D
Sbjct: 1   MGQKSLIYAFVARGTVILAEYTEFSGNFNSIAFQCLQKLPATSNKFTYNCDAHTFTYLLD 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEF 110
           NGYTYCVVADES GRQ+PMAFLER++D+FV++YGG KAATAPAN LNK+F
Sbjct: 61  NGYTYCVVADESVGRQVPMAFLERIRDDFVARYGGEKAATAPANSLNKDF 110

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2010627	220	VAMP726 "AT1G04760" [Arabidops	0.781	0.504	0.783	1.6e-45
TAIR|locus:2010642	219	VAMP721 "AT1G04750" [Arabidops	0.781	0.506	0.756	3.9e-44
TAIR|locus:2046367	285	VAMP725 "AT2G32670" [Arabidops	0.781	0.389	0.756	3.9e-44
TAIR|locus:2046595	229	SAR1 "AT2G33120" [Arabidopsis	0.781	0.484	0.714	4e-42
TAIR|locus:2046490	217	VAMP723 "AT2G33110" [Arabidops	0.781	0.511	0.684	1.1e-39
TAIR|locus:2080340	240	VAMP727 "AT3G54300" [Arabidops	0.654	0.387	0.655	6e-32
DICTYBASE|DDB_G0277173	260	vamp7B "vesicle-associated mem	0.732	0.4	0.447	6.5e-19
TAIR|locus:2116672	219	VAMP711 "vesicle-associated me	0.739	0.479	0.420	1.4e-16
ZFIN|ZDB-GENE-040426-1055	220	sybl1 "synaptobrevin-like 1" [	0.739	0.477	0.377	1.6e-15
TAIR|locus:2147952	221	VAMP713 "AT5G11150" [Arabidops	0.739	0.475	0.407	2e-15

TAIR|locus:2010627 VAMP726 "AT1G04760" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 87/111 (78%), Positives = 98/111 (88%)

Query:     1 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
             M Q+SLIY+FVARG V+LAEYTEF GNF S+A QCLQKLP+SNNKFTYNCD HTFNYL D
Sbjct:     1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLAD 60

Query:    61 NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
             NG+TYCVV  ES+GRQIPMAFLERVK++F  +YGGGKA+TA AN LNKEFG
Sbjct:    61 NGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFG 111

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005768 "endosome" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2010642 VAMP721 "AT1G04750" [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 84/111 (75%), Positives = 100/111 (90%)

Query:     1 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
             M+Q+SLIY+FVARG V+L E+T+F GNF SIA QCLQKLP+SNNKFTYNCD HTFNYLV+
Sbjct:     1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 60

Query:    61 NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
             +G+TYCVVA +S+GRQIPM+FLERVK++F  +YGGGKAATA AN LNKEFG
Sbjct:    61 DGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFG 111

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005768 "endosome" evidence=IDA;TAS

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0009506 "plasmodesma" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0009920 "cell plate formation involved in plant-type cell wall biogenesis" evidence=IGI

GO:0072661 "protein targeting to plasma membrane" evidence=IGI

TAIR|locus:2046367 VAMP725 "AT2G32670" [Arabidopsis thaliana (taxid:3702)]

 Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
 Identities = 84/111 (75%), Positives = 97/111 (87%)

Query:     1 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
             M Q++LIY+FVARG V+L EYTEF GNF ++A QCLQKLP+SNNKFTYNCD HTFNYLV+
Sbjct:    66 MGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 125

Query:    61 NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
             NG+TYCVVA ES GRQIPMAFLERVK++F  +YGGGKA TA AN LN+EFG
Sbjct:   126 NGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFG 176

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005768 "endosome" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

TAIR|locus:2046595 SAR1 "AT2G33120" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 85/119 (71%), Positives = 100/119 (84%)

Query:     1 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
             M+Q+SLIY+FVARG V+L E+T+F GNF SIA QCLQKLP+SNNKFTYNCD HTFNYLV+
Sbjct:     1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 60

Query:    61 NGYT--------YCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
             NG++        YCVVA +S+GRQIPMAFLERVK++F  +YGGGKAATA AN LNKEFG
Sbjct:    61 NGFSESKYCSISYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFG 119

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0005768 "endosome" evidence=IDA;TAS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0009920 "cell plate formation involved in plant-type cell wall biogenesis" evidence=IGI

GO:0072661 "protein targeting to plasma membrane" evidence=IGI

TAIR|locus:2046490 VAMP723 "AT2G33110" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 76/111 (68%), Positives = 94/111 (84%)

Query:     1 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
             M+Q+SL Y+F+ARG V+L E+T+F GNF S+A Q L+ LP+SNNKFTYNCD HTFN LV+
Sbjct:     1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVE 60

Query:    61 NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
             NG+TYCVVA +S+GR+IPMAFLERVK++F  +YGG KAAT  AN LNKEFG
Sbjct:    61 NGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFG 111

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=TAS

TAIR|locus:2080340 VAMP727 "AT3G54300" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 61/93 (65%), Positives = 80/93 (86%)

Query:     1 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
             MSQK LIY+FVA+G VVLAE+T +SGNF++IA QCLQKLP +++K+TY+CD HTFN+LVD
Sbjct:     1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVD 60

Query:    61 NGYTYCVVADESSGRQIPMAFLERVKDEFVSKY 93
             NG+ + VVADES+GR +P  FLERVK++F  +Y
Sbjct:    61 NGFVFLVVADESTGRSVPFVFLERVKEDFKKRY 93

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005768 "endosome" evidence=IDA;TAS

GO:0006623 "protein targeting to vacuole" evidence=RCA;IMP

GO:0007033 "vacuole organization" evidence=RCA;IMP

GO:0031201 "SNARE complex" evidence=IPI

DICTYBASE|DDB_G0277173 vamp7B "vesicle-associated membrane protein 7B" [Dictyostelium discoideum (taxid:44689)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 47/105 (44%), Positives = 68/105 (64%)

Query:     6 LIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTY 65
             +IY+ VARG+ VLAE+T  +GNF +I  + L  +P ++ K +Y  + + F+YLV +  TY
Sbjct:     3 IIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTY 62

Query:    66 CVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEF 110
               +ADE  GR+IP  FL+ VK+ F S YG  K  TA A G+N +F
Sbjct:    63 LCMADEEFGRRIPFTFLDDVKNRFKSMYGD-KGKTAIAYGMNSDF 106

GO:0005768 "endosome" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000331 "contractile vacuole" evidence=IDA

GO:0006906 "vesicle fusion" evidence=ISS

GO:0005765 "lysosomal membrane" evidence=IEA;ISS

GO:0031902 "late endosome membrane" evidence=IEA;ISS

GO:0031201 "SNARE complex" evidence=ISS

GO:0008333 "endosome to lysosome transport" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;ISS

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0030658 "transport vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2116672 VAMP711 "vesicle-associated membrane protein 711" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 45/107 (42%), Positives = 68/107 (63%)

Query:     5 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNK-FTYNCDAHTFNYLVDNGY 63
             +++YA VARG VVL+E+T  S N ++IA Q L+K+P  N+   +Y+ D + F+    +G 
Sbjct:     2 AILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGL 61

Query:    64 TYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEF 110
             T   +A+E++GR+IP AFLE +   FV  YG     TA A  +N+EF
Sbjct:    62 TVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRA-VHTALAYAMNEEF 107

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0046909 "intermembrane transport" evidence=TAS

GO:0009651 "response to salt stress" evidence=RCA;IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010118 "stomatal movement" evidence=IMP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

ZFIN|ZDB-GENE-040426-1055 sybl1 "synaptobrevin-like 1" [Danio rerio (taxid:7955)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 40/106 (37%), Positives = 60/106 (56%)

Query:     5 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYT 64
             ++++A VARG+ VLA++  FSGNF  +  Q L K+P+ NNK TY+  ++ F+Y+      
Sbjct:     2 AILFAVVARGSTVLAKHACFSGNFLEVTEQILAKIPSENNKLTYSHGSYLFHYICHERIV 61

Query:    65 YCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEF 110
             Y  + D+   R     FL  VK  F + YG  +A TA    +N EF
Sbjct:    62 YLCITDDEFERSRAFGFLNEVKKRFQTTYGS-RAQTALPYAMNSEF 106

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2147952 VAMP713 "AT5G11150" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 44/108 (40%), Positives = 67/108 (62%)

Query:     5 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPA--SNNKFTYNCDAHTFNYLVDNG 62
             ++I+A VARG VVL+E++  S N +SI+ Q L+KLP   S++  +Y+ D + F+    +G
Sbjct:     2 AIIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDG 61

Query:    63 YTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEF 110
              T   +ADE++GR IP AFL+ +   FV  YG     +A A  +N EF
Sbjct:    62 LTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRA-IHSAQAYSMNDEF 108

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=TAS

GO:0009651 "response to salt stress" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9MAS5	VA726_ARATH	No assigned EC number	0.7837	0.7816	0.5045	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_2000046 SubName- Full=Putative uncharacterized protein; (221 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	142
pfam13774	82	pfam13774, Longin, Regulated-SNARE-like domain	6e-28

>gnl|CDD|222370 pfam13774, Longin, Regulated-SNARE-like domain

 Score = 98.0 bits (245), Expect = 6e-28
 Identities = 32/78 (41%), Positives = 50/78 (64%)

Query: 31  IAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFV 90
           +A   L+KLP ++ + +Y    +TF+YLV++G  Y  +AD+   R++  AFLE +KDEF+
Sbjct: 1   VAKTILEKLPPNSPRQSYEEGNYTFHYLVEDGLCYLCIADKEYPRRLAFAFLEEIKDEFL 60

Query: 91  SKYGGGKAATAPANGLNK 108
            KYGG +AATA      +
Sbjct: 61  KKYGGSQAATASPYAFPE 78

Longin is one of the approximately 26 components required for transporting proteins from the ER to the plasma membrane, via the Golgi apparatus. It is necessary for the steps of the transfer from the ER to the Golgi complex. Longins are the only R-SNAREs that are common to all eukaryotes, and they are characterized by a conserved N-terminal domain with a profilin-like fold called a longin domain. Length = 82

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
KOG0859	217	consensus Synaptobrevin/VAMP-like protein [Intrace	100.0
KOG0862	216	consensus Synaptobrevin/VAMP-like protein SEC22 [I	99.93
PF13774	83	Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3	99.91
KOG0861	198	consensus SNARE protein YKT6, synaptobrevin/VAMP s	98.71
COG5143	190	SNC1 Synaptobrevin/VAMP-like protein [Intracellula	98.61
PF04086	279	SRP-alpha_N: Signal recognition particle, alpha su	95.38
KOG0781	587	consensus Signal recognition particle receptor, al	91.22

>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.9e-40  Score=249.75  Aligned_cols=122  Identities=60%  Similarity=0.937  Sum_probs=114.4

Q ss_pred             ceeEEEEEEcCCeEEEeeeCCCCCHHHHHHHHHhcCCCC-CCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 032341            4 KSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPAS-NNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL   82 (142)
Q Consensus         4 m~I~Ya~VArg~~iLae~~~~~gnf~~~a~~iL~kl~~~-~~k~t~~~~~~~fh~L~~~gi~ylcvtd~~~~~~~aF~FL   82 (142)
                      |+|+||+||||++|||||++.+|||.++|++||+|||++ ++|+||..|+|+|||+.+||++||||+|++.+|++||+||
T Consensus         1 m~iiYs~VARGTvvLaeft~~~gNf~sva~qiL~klp~~~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaFL   80 (217)
T KOG0859|consen    1 MSIIYSFVARGTVILAEFTEFSGNFSSIAAQILQKLPSSSNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAFL   80 (217)
T ss_pred             CceeEEEEecceEEEEeeeeccCCHHHHHHHHHHhCCCCCCCceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHHH
Confidence            799999999999999999999999999999999999986 6799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCccCCCCCChhhHHHHHHHhhchhccccCCCCC
Q 032341           83 ERVKDEFVSKYGGGKAATAPANGLNKEFGYSVVILILKPMNRRFSCYSS  131 (142)
Q Consensus        83 ~eI~~~F~~~y~~~~~~~a~~ysl~~~F~~~l~~lm~~~~~~~~n~~~~  131 (142)
                      ++|+++|.++||. .+.+|.||+||+||+++|     ++-|+.|.+++.
T Consensus        81 e~Ik~~F~k~YG~-~a~ta~AysmN~EFs~vL-----~qqm~y~s~~p~  123 (217)
T KOG0859|consen   81 ERIKEDFKKRYGG-GAHTAVAYSMNKEFSSVL-----KQQMQYCSEHPE  123 (217)
T ss_pred             HHHHHHHHHHhcc-chhHHHHhHhHHHHHHHH-----HHHHHHHHcCcc
Confidence            9999999999995 589999999999999999     556666666654

>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.7e-25  Score=173.64  Aligned_cols=122  Identities=23%  Similarity=0.426  Sum_probs=108.4

Q ss_pred             eeEEEEEEc--CCeEEEeeeC---CCCCH----HHHHHHHHhcCCCC-CCeEEEEeCCeEEEEEEeCCEEEEEEecCCCC
Q 032341            5 SLIYAFVAR--GNVVLAEYTE---FSGNF----NSIAYQCLQKLPAS-NNKFTYNCDAHTFNYLVDNGYTYCVVADESSG   74 (142)
Q Consensus         5 ~I~Ya~VAr--g~~iLae~~~---~~gnf----~~~a~~iL~kl~~~-~~k~t~~~~~~~fh~L~~~gi~ylcvtd~~~~   74 (142)
                      ||++++|+|  +++|||...+   .+|+.    .+.++.+++++.+. +.+.|.+.|.|.|||++++||||+|+||+++|
T Consensus         1 mi~~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s~~r~Sietg~f~fHfli~~~Vcylvicd~~yP   80 (216)
T KOG0862|consen    1 MILLTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQSPTRCSIETGPFVFHFLIESGVCYLVICDKSYP   80 (216)
T ss_pred             CceeEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCCCcccccccCCeEEEEEecCCEEEEEEecCCCc
Confidence            789999999  6799998654   24443    67899999999886 88999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCC-ccCCCCCChhhHHHHHHHhhchhccccCCCCCc
Q 032341           75 RQIPMAFLERVKDEFVSKYGGGKAA-TAPANGLNKEFGYSVVILILKPMNRRFSCYSSL  132 (142)
Q Consensus        75 ~~~aF~FL~eI~~~F~~~y~~~~~~-~a~~ysl~~~F~~~l~~lm~~~~~~~~n~~~~~  132 (142)
                      +++||+||++|.++|.+.|+.+... ..+||++ -+|.+.|     |+.+++||+.++-
T Consensus        81 ~kLAF~YLedL~~EF~~~~~~~~~~~~~RPY~F-ieFD~~I-----Qk~Kk~ynd~r~~  133 (216)
T KOG0862|consen   81 RKLAFSYLEDLAQEFDKSYGKNIIQPASRPYAF-IEFDTFI-----QKTKKRYNDTRSQ  133 (216)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCCccCCCeeE-EehhHHH-----HHHHHHhcCcHHH
Confidence            9999999999999999999975554 6689999 5999999     8999999998753

>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D

Probab=99.91  E-value=6.7e-24  Score=142.94  Aligned_cols=81  Identities=33%  Similarity=0.696  Sum_probs=74.8

Q ss_pred             HHHHHHhcCCCCC-CeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhcCCCCCCccCCCCCChh
Q 032341           31 IAYQCLQKLPASN-NKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKE  109 (142)
Q Consensus        31 ~a~~iL~kl~~~~-~k~t~~~~~~~fh~L~~~gi~ylcvtd~~~~~~~aF~FL~eI~~~F~~~y~~~~~~~a~~ysl~~~  109 (142)
                      +|++||+++++.+ +|.+++.|+|.|||+++||++||||||+++|+++||.||++|+++|.++|+...+.++.||+| .+
T Consensus         1 ~a~~il~~i~~~~~~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~~~~~~a~~~~~-~~   79 (83)
T PF13774_consen    1 QARKILKRIPPNGNSKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGGDQIKSASPYSF-KE   79 (83)
T ss_dssp             HHHHHHHTS-TTSESEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTTTTTTTSTTTTT-HH
T ss_pred             CHHHHHHhcCCCCCCeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCcchhcccCCcch-hh
Confidence            5899999999655 899999999999999999999999999999999999999999999999999778999999999 89


Q ss_pred             hHH
Q 032341          110 FGY  112 (142)
Q Consensus       110 F~~  112 (142)
                      |++
T Consensus        80 F~~   82 (83)
T PF13774_consen   80 FDS   82 (83)
T ss_dssp             HHH
T ss_pred             cCC
Confidence            986

...

>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=2.3e-07  Score=70.73  Aligned_cols=72  Identities=17%  Similarity=0.261  Sum_probs=62.5

Q ss_pred             HHHHHHhcCCCCCCeEEEEeCCeEEEEEEeC-CEEEEEEecCCCCcccHHHHHHHHHHHHHhhcCCCCCCccCC
Q 032341           31 IAYQCLQKLPASNNKFTYNCDAHTFNYLVDN-GYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPA  103 (142)
Q Consensus        31 ~a~~iL~kl~~~~~k~t~~~~~~~fh~L~~~-gi~ylcvtd~~~~~~~aF~FL~eI~~~F~~~y~~~~~~~a~~  103 (142)
                      +++.+.++.+| ..+.+++.+.|..|..+.+ |++++|++|.+||.+.||.+|++|.++|...-...+|....+
T Consensus        43 ~sktvaeRt~~-g~rqsvk~~~Y~~h~yvrndgL~~V~~~D~eYP~rvA~tLL~kvld~~~~k~~~~~W~~~~~  115 (198)
T KOG0861|consen   43 ISKTVAERTGP-GQRQSVKHEEYLVHVYVRNDGLCGVLIADDEYPVRVAFTLLNKVLDEFTTKVPATQWPVGET  115 (198)
T ss_pred             HHHHHHHhcCc-ccccccccceeEEEEEEecCCeeEEEEecCcCchhHHHHHHHHHHHHHhhcCcccccCcCCC
Confidence            67889999987 5678899999999999976 999999999999999999999999999977766677774433

>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]

Probab=98.61  E-value=1.9e-07  Score=72.06  Aligned_cols=111  Identities=16%  Similarity=0.213  Sum_probs=79.9

Q ss_pred             eeEEEEEEcCC--eEEEe-eeCCCCCH--HHHHHHHHhcCCCC-CCeEEEEeCCeEEEEEEeC-CEEEEEEecCCCCccc
Q 032341            5 SLIYAFVARGN--VVLAE-YTEFSGNF--NSIAYQCLQKLPAS-NNKFTYNCDAHTFNYLVDN-GYTYCVVADESSGRQI   77 (142)
Q Consensus         5 ~I~Ya~VArg~--~iLae-~~~~~gnf--~~~a~~iL~kl~~~-~~k~t~~~~~~~fh~L~~~-gi~ylcvtd~~~~~~~   77 (142)
                      .+++..+..|.  .+|++ ++..+..|  ...++.+|.++.|. .++.+.+.++|.|||+..+ |++|.|+|+.++|+++
T Consensus         2 ~s~~~~~~~~~~~~~~~~~~s~~~~~ff~~~~v~~~l~~~~~~~a~~~~ies~~~~~~~~~~s~gi~y~~~~~~e~p~~l   81 (190)
T COG5143           2 ASISLFRVKGEPLRTLSDAESLSSFSFFHRSKVKEVLRFLSKTSASRASIESGDYFFHYLKMSSGIVYVPISDKEYPNKL   81 (190)
T ss_pred             ceEEEEeecCCcceeeccccccCcccccccchHHHHHHHhcccccchhccccCceEEEEEecCCCceeEEecccccchhh
Confidence            45565565553  34443 21112222  45788888888663 4567888999999999976 9999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCc-cCCCCCChhhHHHHHH
Q 032341           78 PMAFLERVKDEFVSKYGGGKAAT-APANGLNKEFGYSVVI  116 (142)
Q Consensus        78 aF~FL~eI~~~F~~~y~~~~~~~-a~~ysl~~~F~~~l~~  116 (142)
                      |+.+|+++..+|..+.....+.. ..++.+ .+|.+.+++
T Consensus        82 a~~~~~~~~~~~~~s~~~~~~~d~~~~~~~-~~~d~~~e~  120 (190)
T COG5143          82 AYGYLNSIATEFLKSSALEQLIDDTVGIMR-VNIDKVIEK  120 (190)
T ss_pred             hhHHHHhhccHhhhhhhHhhcccCccchhh-hhHHHHHHh
Confidence            99999999999988876444333 345556 588888854

>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=95.38  E-value=0.014  Score=47.07  Aligned_cols=88  Identities=22%  Similarity=0.270  Sum_probs=51.1

Q ss_pred             HHHHHHHhcCCCCCCeEEEEeCCeEEEEEEeC--CEEEEEEecCCCCcccHHHHHHHHHHHHHhhcCCCCC----Cc-c-
Q 032341           30 SIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN--GYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKA----AT-A-  101 (142)
Q Consensus        30 ~~a~~iL~kl~~~~~k~t~~~~~~~fh~L~~~--gi~ylcvtd~~~~~~~aF~FL~eI~~~F~~~y~~~~~----~~-a-  101 (142)
                      .+++.+|-.=..  ...+|.+|+|..+|...|  |++|++|-.+-..-.-.=.||++|+..|...|+....    .. . 
T Consensus         6 ~LI~~vlleeR~--~~~~~~~d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~l~~~~~~~~~~   83 (279)
T PF04086_consen    6 ALIRDVLLEERS--GNSSFTYDNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQLKQLKPNTSIN   83 (279)
T ss_dssp             HHHHHTGGG---------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHHHHSSSTHHHHT
T ss_pred             HHHHHhheeecc--CCCceeEcCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHHhhccccccccc
Confidence            445555433222  345678899999999976  5999999998888766669999999999999984211    11 1 


Q ss_pred             CCCCCChhhHHHHHHHhh
Q 032341          102 PANGLNKEFGYSVVILIL  119 (142)
Q Consensus       102 ~~ysl~~~F~~~l~~lm~  119 (142)
                      ....|+..|...|+++-.
T Consensus        84 ~~~~Fd~~F~~~l~~~e~  101 (279)
T PF04086_consen   84 EYFDFDEEFDQLLKELEA  101 (279)
T ss_dssp             -----HHHHHHHHHHHCC
T ss_pred             cchhHHHHHHHHHHHHHH
Confidence            123788888888876643

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.22  E-value=1.1  Score=39.65  Aligned_cols=87  Identities=22%  Similarity=0.313  Sum_probs=64.1

Q ss_pred             EEEEEEcCCeEEEeeeCCCCCHHH----HHHHHHhcCCCCCCeEEEEeCCeEEEEEEe--CCEEEEEEecCCCCcccHHH
Q 032341            7 IYAFVARGNVVLAEYTEFSGNFNS----IAYQCLQKLPASNNKFTYNCDAHTFNYLVD--NGYTYCVVADESSGRQIPMA   80 (142)
Q Consensus         7 ~Ya~VArg~~iLae~~~~~gnf~~----~a~~iL~kl~~~~~k~t~~~~~~~fh~L~~--~gi~ylcvtd~~~~~~~aF~   80 (142)
                      .++...+|+.||+-|.+.+.||..    +.+.+|-.-..  +--+++.+.|...|=-+  -+++|+|+-.+-.--..+-.
T Consensus         4 ~faIFtkgG~vLw~~~~~~~~~~~~in~lI~~~ll~er~--~~~~~~~~~yTlk~q~~N~~~lvfvvvfqki~~L~yv~~   81 (587)
T KOG0781|consen    4 QFAIFTKGGLVLWCYQEVGDNLKGPINALIRSVLLSERG--GVNSFTFEAYTLKYQLDNQYSLVFVVVFQKILTLTYVDK   81 (587)
T ss_pred             eeeeecCCcEEEEEecccchhccchHHHHHHHHHHHhhc--CcccCchhheeEeeeecCCccEEEEEEEeccchhhhHHH
Confidence            578889999999999877666644    44444433211  11225667777777665  47999999998888778889


Q ss_pred             HHHHHHHHHHhhcCC
Q 032341           81 FLERVKDEFVSKYGG   95 (142)
Q Consensus        81 FL~eI~~~F~~~y~~   95 (142)
                      +|+++.+.|...|..
T Consensus        82 ll~~v~~~f~e~~~~   96 (587)
T KOG0781|consen   82 LLNDVLNLFREKYDT   96 (587)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999999963

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	142
2dmw_A	131	Solution Structure Of The Longin Domain Of Synaptob		2e-14
4b93_A	189	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		6e-14
2vx8_A	169	Vamp7 Longin Domain Hrb Peptide Complex Length = 16		8e-14
4afi_A	173	Complex Between Vamp7 Longin Domain And Fragment Of		9e-14

>pdb|2DMW|A Chain A, Solution Structure Of The Longin Domain Of Synaptobrevin- Like Protein 1 Length = 131

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 2   SQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN 61
           S  ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +
Sbjct: 6   SGMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQD 65
Query: 62  GYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGYSVVILILK 120
              Y  + D+   R     FL  +K  F + Y G +A TAP   +N EF  SV+   LK
Sbjct: 66  RIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTAPPYAMNSEFS-SVLAAQLK 122

>pdb|4B93|A Chain A, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 189

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
Query: 5   SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYT 64
           ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   
Sbjct: 3   AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 62
Query: 65  YCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
           Y  + D+   R    +FL  VK  F + Y G +A TA    +N EF 
Sbjct: 63  YLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFS 108

>pdb|2VX8|A Chain A, Vamp7 Longin Domain Hrb Peptide Complex Length = 169

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 5   SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYT 64
           ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   
Sbjct: 45  AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 104
Query: 65  YCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGYSVVILILK 120
           Y  + D+   R    +FL  VK  F + Y G +A TA    +N EF  SV+   LK
Sbjct: 105 YLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFS-SVLAAQLK 158

>pdb|4AFI|A Chain A, Complex Between Vamp7 Longin Domain And Fragment Of Delta- Adaptin From Ap3 Length = 173

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 5   SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYT 64
           ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   
Sbjct: 55  AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 114
Query: 65  YCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGYSVVILILK 120
           Y  + D+   R    +FL  VK  F + Y G +A TA    +N EF  SV+   LK
Sbjct: 115 YLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFS-SVLAAQLK 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	4e-38
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	5e-35
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	2e-19
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	7e-16
2fh5_A	185	Signal recognition particle receptor alpha subunit	4e-04

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens} Length = 173

 Score =  126 bits (317), Expect = 4e-38
 Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 1/111 (0%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
               ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  
Sbjct: 51  EEAMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQ 110

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
           +   Y  + D+   R    +FL  VK  F + Y G +A TA    +N EF 
Sbjct: 111 DRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFS 160

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A Length = 169

 Score =  118 bits (297), Expect = 5e-35
 Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 1/110 (0%)

Query: 2   SQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN 61
              ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +
Sbjct: 42  KGMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQD 101

Query: 62  GYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFG 111
              Y  + D+   R    +FL  VK  F + Y G +A TA    +N EF 
Sbjct: 102 RIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFS 150

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A Length = 196

 Score = 78.8 bits (193), Expect = 2e-19
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 11/114 (9%)

Query: 7   IYAFVARGN--VVLAEYTEFSG-------NFNSIAYQCLQKLPA-SNNKFTYNCDAHTFN 56
           +   +AR    + LA   +           + S A Q  +KL   S  + T    A TF+
Sbjct: 4   LLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFH 63

Query: 57  YLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEF 110
           Y+++ G  Y V+ + +  +++  A+LE +  EF  ++ G K  T        EF
Sbjct: 64  YIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQH-GKKVPTVSRPYSFIEF 116

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus} Length = 199

 Score = 69.9 bits (170), Expect = 7e-16
 Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 10/104 (9%)

Query: 8   YAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNY-LVDNGYTYC 66
           ++F  R +V           F +   Q + +  A  ++ +     +  +  +  +     
Sbjct: 29  FSFFQRSSV---------QEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGV 79

Query: 67  VVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEF 110
           V+AD     ++    LE+V DEF  +             ++   
Sbjct: 80  VIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHYTA 123

>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1 Length = 185

 Score = 37.8 bits (87), Expect = 4e-04
 Identities = 20/107 (18%), Positives = 37/107 (34%), Gaps = 8/107 (7%)

Query: 13  RGNVVLAEYTEFSGNF----NSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVV 68
           +G +VL  +   S +     N++    L  L       ++  +A T  Y +DN +    V
Sbjct: 19  KGGLVLWCFQGVSDSCTGPVNALIRSVL--LQERGGNNSFTHEALTLKYKLDNQFELVFV 76

Query: 69  ADESSGRQIPMA--FLERVKDEFVSKYGGGKAATAPANGLNKEFGYS 113
                   +      ++ V   F  KY       +  + LN  F + 
Sbjct: 77  VGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQ 123

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	100.0
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	100.0
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	100.0
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	99.97
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	99.94
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	99.82
2fh5_A	185	Signal recognition particle receptor alpha subunit	98.0
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	91.6
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	90.46
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	89.99
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	86.79
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	86.29

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.8e-41  Score=255.13  Aligned_cols=120  Identities=32%  Similarity=0.537  Sum_probs=114.8

Q ss_pred             cceeEEEEEEcCCeEEEeeeCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 032341            3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL   82 (142)
Q Consensus         3 ~m~I~Ya~VArg~~iLae~~~~~gnf~~~a~~iL~kl~~~~~k~t~~~~~~~fh~L~~~gi~ylcvtd~~~~~~~aF~FL   82 (142)
                      .|+|+|||||||++|||||+..+|||..++++||+|+|++++|.+++.|+|.|||++++|++||||||+++|+++||+||
T Consensus        53 ~M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FL  132 (173)
T 4afi_A           53 AMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL  132 (173)
T ss_dssp             CCCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred             cccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHH
Confidence            48899999999999999999999999999999999999988999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCccCCCCCChhhHHHHHHHhhchhccccCC
Q 032341           83 ERVKDEFVSKYGGGKAATAPANGLNKEFGYSVVILILKPMNRRFSC  128 (142)
Q Consensus        83 ~eI~~~F~~~y~~~~~~~a~~ysl~~~F~~~l~~lm~~~~~~~~n~  128 (142)
                      +||+++|.++|+ .+|.+++||+|+++|+++|     ++.|+|||+
T Consensus       133 edI~~eF~~~yg-~~~~ta~pya~~~eF~~~L-----~~~M~~yn~  172 (173)
T 4afi_A          133 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVL-----AAQLKHHSE  172 (173)
T ss_dssp             HHHHHHHHHHHG-GGGGTCCTTTTHHHHHHHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHhc-hhhhhccCcchhHHHHHHH-----HHHHHHhcC
Confidence            999999999998 5789999999999999999     677888885

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=100.00  E-value=2.4e-38  Score=242.24  Aligned_cols=124  Identities=32%  Similarity=0.534  Sum_probs=114.0

Q ss_pred             cceeEEEEEEcCCeEEEeeeCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 032341            3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL   82 (142)
Q Consensus         3 ~m~I~Ya~VArg~~iLae~~~~~gnf~~~a~~iL~kl~~~~~k~t~~~~~~~fh~L~~~gi~ylcvtd~~~~~~~aF~FL   82 (142)
                      .|||+|||||||++|||||+..+|||.++|++||+++|+.++|.+++.|+|.|||++++|++|+||||+++|+++||.||
T Consensus         1 ~M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL   80 (189)
T 4b93_A            1 SMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL   80 (189)
T ss_dssp             CCSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred             CCceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCccCCCCCChhhHHHHHHHhhchhccccCCCCCc
Q 032341           83 ERVKDEFVSKYGGGKAATAPANGLNKEFGYSVVILILKPMNRRFSCYSSL  132 (142)
Q Consensus        83 ~eI~~~F~~~y~~~~~~~a~~ysl~~~F~~~l~~lm~~~~~~~~n~~~~~  132 (142)
                      ++|+++|..+|+ ..+.++.|++++.+|.+.|     ++.+.+||+++..
T Consensus        81 ~~i~~eF~~~~~-~~~~~~~~~~~~~~f~~~l-----~~~~~~y~d~~~~  124 (189)
T 4b93_A           81 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVL-----AAQLKHHSENKSL  124 (189)
T ss_dssp             HHHHHHHHHHHG-GGGGTCCTTTTHHHHHHHH-----HHHHHHHHCC---
T ss_pred             HHHHHHHHhhcc-ccccccCCccccchhhHHH-----HHHHHhhhcccch
Confidence            999999999998 4678889999999999999     4555667776553

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A

Probab=100.00  E-value=4e-36  Score=226.79  Aligned_cols=123  Identities=31%  Similarity=0.517  Sum_probs=109.4

Q ss_pred             cceeEEEEEEcCCeEEEeeeCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 032341            3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL   82 (142)
Q Consensus         3 ~m~I~Ya~VArg~~iLae~~~~~gnf~~~a~~iL~kl~~~~~k~t~~~~~~~fh~L~~~gi~ylcvtd~~~~~~~aF~FL   82 (142)
                      .|+|+|+|||||++|||||++.+|||.+++++||+++++.++|.+++.|+|.|||+++||++|+||||+++|+++||+||
T Consensus        43 ~M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fL  122 (169)
T 2vx8_A           43 GMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL  122 (169)
T ss_dssp             SSCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred             CCceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHH
Confidence            48999999999999999999999999999999999999978899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCccCCCCCChhhHHHHHHHhhchhccccCCCCC
Q 032341           83 ERVKDEFVSKYGGGKAATAPANGLNKEFGYSVVILILKPMNRRFSCYSS  131 (142)
Q Consensus        83 ~eI~~~F~~~y~~~~~~~a~~ysl~~~F~~~l~~lm~~~~~~~~n~~~~  131 (142)
                      ++|+++|.++|+. .|.++.||+|+++|++.|     ++.+++||+++-
T Consensus       123 edI~~eF~~~y~~-~~~~a~pysf~~eF~~~L-----k~~~~~~~~~~~  165 (169)
T 2vx8_A          123 NEVKKRFQTTYGS-RAQTALPYAMNSEFSSVL-----AAQLKHHSENHH  165 (169)
T ss_dssp             HHHHHHHHHHHTT-GGGTCCTTTTHHHHHHHH-----SCC---------
T ss_pred             HHHHHHHHHHhhh-hhhccCCcchhHHHHHHH-----HHHHHHhcCccc
Confidence            9999999999984 678888999988999999     899999998763

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=99.97  E-value=2.5e-30  Score=198.30  Aligned_cols=120  Identities=23%  Similarity=0.400  Sum_probs=106.4

Q ss_pred             eeEEEEEEcC--CeEEEeeeCCC---CC----HHHHHHHHHhcCCC-CCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCC
Q 032341            5 SLIYAFVARG--NVVLAEYTEFS---GN----FNSIAYQCLQKLPA-SNNKFTYNCDAHTFNYLVDNGYTYCVVADESSG   74 (142)
Q Consensus         5 ~I~Ya~VArg--~~iLae~~~~~---gn----f~~~a~~iL~kl~~-~~~k~t~~~~~~~fh~L~~~gi~ylcvtd~~~~   74 (142)
                      ||+|+|||||  ++||||+++.+   |+    |.++++.+|+++|+ .+.|.+++.|+|.|||++++|++|+||||+++|
T Consensus         2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp   81 (196)
T 2nut_C            2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP   81 (196)
T ss_dssp             CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred             ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcc
Confidence            6999999999  79999998643   55    89999999999997 678999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCC-ccCCCCCChhhHHHHHHHhhchhccccCCCCC
Q 032341           75 RQIPMAFLERVKDEFVSKYGGGKAA-TAPANGLNKEFGYSVVILILKPMNRRFSCYSS  131 (142)
Q Consensus        75 ~~~aF~FL~eI~~~F~~~y~~~~~~-~a~~ysl~~~F~~~l~~lm~~~~~~~~n~~~~  131 (142)
                      +++||.||++|+++|...|+. .+. .+.||+++ +|++.|     ++.|.+||+.+.
T Consensus        82 ~r~af~fL~~i~~~F~~~~~~-~~~~~~~~~~~~-~f~~~l-----~~~~~~y~~~~~  132 (196)
T 2nut_C           82 KKLAFAYLEDLHSEFDEQHGK-KVPTVSRPYSFI-EFDTFI-----QKTKKLYIDSRA  132 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT-TTTTCCSTTTTG-GGHHHH-----HHHHTTTSCCC-
T ss_pred             hHHHHHHHHHHHHHHHHhccc-hhccccCCCchH-HHHHHH-----HHHHHHhcCccc
Confidence            999999999999999999985 443 46899995 999999     677888988754

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A

Probab=99.94  E-value=1.6e-26  Score=169.99  Aligned_cols=118  Identities=16%  Similarity=0.182  Sum_probs=94.9

Q ss_pred             cce-eEEEEEEcC----CeEEEeeeCCC----------CCH-HHHHHHHHhcCCCCCCeEEEEeCCeEEEEE-EeCCEEE
Q 032341            3 QKS-LIYAFVARG----NVVLAEYTEFS----------GNF-NSIAYQCLQKLPASNNKFTYNCDAHTFNYL-VDNGYTY   65 (142)
Q Consensus         3 ~m~-I~Ya~VArg----~~iLae~~~~~----------gnf-~~~a~~iL~kl~~~~~k~t~~~~~~~fh~L-~~~gi~y   65 (142)
                      |+| |+|.+|+|+    .++|+++++.+          ++| ..++++|++|+|+ +.|.+++.|+|+|||+ .+||++|
T Consensus         3 ~~Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~-~~R~sv~~~~y~fH~~~~~~gl~~   81 (144)
T 3bw6_A            3 MAMRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA-GQRQSIEEGNYIGHVYARSEGICG   81 (144)
T ss_dssp             CCCCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCT-TEEEEEEETTEEEEEEECTTSEEE
T ss_pred             cEEEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCC-CceEEEEeCCEEEEEEEecCCEEE
Confidence            445 555559998    68999998876          665 7889999999988 4899999999999999 7899999


Q ss_pred             EEEecCCCCcccHHHHHHHHHHHHHhhcCCCCCCc-cC---CCCCChhhHHHHHHHhhchhccccCCCCC
Q 032341           66 CVVADESSGRQIPMAFLERVKDEFVSKYGGGKAAT-AP---ANGLNKEFGYSVVILILKPMNRRFSCYSS  131 (142)
Q Consensus        66 lcvtd~~~~~~~aF~FL~eI~~~F~~~y~~~~~~~-a~---~ysl~~~F~~~l~~lm~~~~~~~~n~~~~  131 (142)
                      |||||+++|+++||.||++|+++|.++|+...|.+ +.   ||++ .+|...|         .+||+.+.
T Consensus        82 l~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~~~~f-~~l~~~i---------~kYqdp~~  141 (144)
T 3bw6_A           82 VLITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKM-KQLDTYI---------SKYQDPSQ  141 (144)
T ss_dssp             EEEEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCGGGCC-THHHHHH---------HHTSCC--
T ss_pred             EEEECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccCCcch-HHHHHHH---------HHhCchhh
Confidence            99999999999999999999999999998543665 34   5666 3444433         33877654

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=99.82  E-value=4.1e-20  Score=142.34  Aligned_cols=118  Identities=14%  Similarity=0.122  Sum_probs=88.8

Q ss_pred             cceeEEEEEEcC--C--eEEEeeeCCC----------CCHHH-HHHHHHhcCCCCCCeEEEEeCCeEEE-EEEeCCEEEE
Q 032341            3 QKSLIYAFVARG--N--VVLAEYTEFS----------GNFNS-IAYQCLQKLPASNNKFTYNCDAHTFN-YLVDNGYTYC   66 (142)
Q Consensus         3 ~m~I~Ya~VArg--~--~iLae~~~~~----------gnf~~-~a~~iL~kl~~~~~k~t~~~~~~~fh-~L~~~gi~yl   66 (142)
                      +|-|++-.|.+.  +  ++|+...+.+          ++|.. +++.+++++|| +.|.+++.|+|.|| |+.++|++|+
T Consensus         1 ~mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~-~~r~s~~~~~y~fH~y~~~~gl~yl   79 (199)
T 3kyq_A            1 LMKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK-GSRASVKEQEYLCHVYVRSDSLAGV   79 (199)
T ss_dssp             CCCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT-TEEEEEECSSEEEEEEECTTSEEEE
T ss_pred             CceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC-CCeEEEEeCCEEEEEEEecCCEEEE
Confidence            455777777762  2  5677554432          44544 45799999887 68999999999999 9999999999


Q ss_pred             EEecCCCCcccHHHHHHHHHHHHHhhcCCCCCC--ccCCCCCChhhHHHHHHHhhchhccccCCCCC
Q 032341           67 VVADESSGRQIPMAFLERVKDEFVSKYGGGKAA--TAPANGLNKEFGYSVVILILKPMNRRFSCYSS  131 (142)
Q Consensus        67 cvtd~~~~~~~aF~FL~eI~~~F~~~y~~~~~~--~a~~ysl~~~F~~~l~~lm~~~~~~~~n~~~~  131 (142)
                      ||||+++|+++||+||++|+++|..+|+...|.  .+.|+++     +.|+++     +.+||+++.
T Consensus        80 ~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~~f-----~~l~~~-----m~~Y~dp~~  136 (199)
T 3kyq_A           80 VIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHY-----TALDGH-----LSRYQNPRE  136 (199)
T ss_dssp             EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTCCC-----CTHHHH-----HHHTTSGGG
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHhccchhhhccccccccc-----HHHHHH-----HHHhCCchh
Confidence            999999999999999999999999999855553  3346654     344333     334877654

>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1

Probab=98.00  E-value=1.9e-05  Score=59.86  Aligned_cols=123  Identities=15%  Similarity=0.192  Sum_probs=76.1

Q ss_pred             EEEEEEcCCeEEEeeeCCCCC----HHHHHHHHHhcCCCCCCeEEEEeCCeEEEEEEeC--CEEEEEEecCCCCcccHHH
Q 032341            7 IYAFVARGNVVLAEYTEFSGN----FNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN--GYTYCVVADESSGRQIPMA   80 (142)
Q Consensus         7 ~Ya~VArg~~iLae~~~~~gn----f~~~a~~iL~kl~~~~~k~t~~~~~~~fh~L~~~--gi~ylcvtd~~~~~~~aF~   80 (142)
                      +.+.+.+|++||+.++....+    ...+++.+|-.=..  +..+|..|+|..++..+|  |++|++|-.+-..-.-.=.
T Consensus        13 ~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~--~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~YiD~   90 (185)
T 2fh5_A           13 FFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERG--GNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVDK   90 (185)
T ss_dssp             EEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHHH
T ss_pred             EEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhcccc--CCCceeEcCeEEEEEEeccCCEEEEEEEcccccchHHHH
Confidence            578899999999998543323    35556655543322  234678899999999976  6999999888766666669


Q ss_pred             HHHHHHHHHHhhcCCCCC--Ccc----CCCCCChhhHHHHHHHhh------chhccccCCCCC
Q 032341           81 FLERVKDEFVSKYGGGKA--ATA----PANGLNKEFGYSVVILIL------KPMNRRFSCYSS  131 (142)
Q Consensus        81 FL~eI~~~F~~~y~~~~~--~~a----~~ysl~~~F~~~l~~lm~------~~~~~~~n~~~~  131 (142)
                      +|++|+..|...|++...  ...    .++.++..|...++++-.      .+.|+.|++..+
T Consensus        91 LL~~v~~~Fv~~Y~~~L~~~~~~~~~~~~~~Fd~~F~~~l~~~e~~~~~~~~k~mr~fees~k  153 (185)
T 2fh5_A           91 LIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEESSKIRAPTTMKKFEDSEK  153 (185)
T ss_dssp             HHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccccCchhHHHHHHHHHHHHHHHhhhHHhhccHhhhhh
Confidence            999999999999964311  111    345688889988877643      233566665443

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=91.60  E-value=2.2  Score=30.54  Aligned_cols=48  Identities=10%  Similarity=0.229  Sum_probs=42.0

Q ss_pred             EEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhcC
Q 032341           47 TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG   94 (142)
Q Consensus        47 t~~~~~~~fh~L~~~gi~ylcvtd~~~~~~~aF~FL~eI~~~F~~~y~   94 (142)
                      ....+++.|-|...+++.|+|+++.+..--..+.||..+-+-+..-++
T Consensus        49 ~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~   96 (158)
T 1w63_Q           49 FLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFG   96 (158)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHS
T ss_pred             eEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            345689999999999999999999999999999999998888877665

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=90.46  E-value=1.6  Score=35.94  Aligned_cols=91  Identities=12%  Similarity=0.143  Sum_probs=59.1

Q ss_pred             ceeEEEEEEc--CCeEEEee-eC-CCCC-HHHHHHHHHhcCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccH
Q 032341            4 KSLIYAFVAR--GNVVLAEY-TE-FSGN-FNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIP   78 (142)
Q Consensus         4 m~I~Ya~VAr--g~~iLae~-~~-~~gn-f~~~a~~iL~kl~~~~~k~t~~~~~~~fh~L~~~gi~ylcvtd~~~~~~~a   78 (142)
                      |||-..+|..  |.++|+-+ .. ...+ .+..-+.++.+-.+....-..+.+++.|-|...+++.|+|+++.+..--..
T Consensus         1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~   80 (423)
T 1w63_M            1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLV   80 (423)
T ss_dssp             -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHH
T ss_pred             CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence            5666655543  44666644 22 1222 333344444432111111234568999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcC
Q 032341           79 MAFLERVKDEFVSKYG   94 (142)
Q Consensus        79 F~FL~eI~~~F~~~y~   94 (142)
                      +.||..+.+-+..-++
T Consensus        81 le~L~~~v~~l~~yf~   96 (423)
T 1w63_M           81 FSFLYKVVQVFSEYFK   96 (423)
T ss_dssp             HHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999988877765

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A

Probab=89.99  E-value=4  Score=29.19  Aligned_cols=89  Identities=11%  Similarity=0.147  Sum_probs=62.9

Q ss_pred             ceeEEEEEE--cCCeEEEeeeCCC-CCH---HHHHHHHHhcCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCccc
Q 032341            4 KSLIYAFVA--RGNVVLAEYTEFS-GNF---NSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQI   77 (142)
Q Consensus         4 m~I~Ya~VA--rg~~iLae~~~~~-gnf---~~~a~~iL~kl~~~~~k~t~~~~~~~fh~L~~~gi~ylcvtd~~~~~~~   77 (142)
                      .||-.-+|-  +|.++|+-|-... .+.   ....+.+.+++.+.++ -....+++.+-|...+++.|+|+++.+..--.
T Consensus        11 ~mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~~-~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~   89 (153)
T 3tjz_C           11 YTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDS-EIALLEGLTVVYKSSIDLYFYVIGSSYENELM   89 (153)
T ss_dssp             BCEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCCC-CEEEETTEEEEEEECSSCEEEEEEETTSCHHH
T ss_pred             HHheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCC-CEEEECCEEEEEEEECCEEEEEEEcCCCChHH
Confidence            355555554  4678998864321 222   2233344444433233 34567899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhc
Q 032341           78 PMAFLERVKDEFVSKY   93 (142)
Q Consensus        78 aF~FL~eI~~~F~~~y   93 (142)
                      .+.||..+-+-+..-+
T Consensus        90 ile~L~~~ve~l~~yf  105 (153)
T 3tjz_C           90 LMTVLNCLFDSLSQML  105 (153)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999988888

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M

Probab=86.79  E-value=11  Score=31.09  Aligned_cols=81  Identities=11%  Similarity=0.122  Sum_probs=55.0

Q ss_pred             cCCeEEEeeeCCCCCHHHHHHHHHhcCCC--C-CCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHH
Q 032341           13 RGNVVLAEYTEFSGNFNSIAYQCLQKLPA--S-NNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEF   89 (142)
Q Consensus        13 rg~~iLae~~~~~gnf~~~a~~iL~kl~~--~-~~k~t~~~~~~~fh~L~~~gi~ylcvtd~~~~~~~aF~FL~eI~~~F   89 (142)
                      +|.++|+-+-..... ...+....+.+..  . ...-..+.+++.|-|...+++.|+|+++.+..--..+.||..+.+-+
T Consensus        11 ~Gk~~l~k~y~~~~~-~~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl   89 (435)
T 2vgl_M           11 KGEVLISRVYRDDIG-RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVM   89 (435)
T ss_dssp             TCCEEEEEECSSSCC-HHHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEecCCCCC-hhHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence            356777765332222 2333333333321  1 12233457899999999999999999999999999999999999888


Q ss_pred             HhhcC
Q 032341           90 VSKYG   94 (142)
Q Consensus        90 ~~~y~   94 (142)
                      ..-++
T Consensus        90 ~~yf~   94 (435)
T 2vgl_M           90 AAYFG   94 (435)
T ss_dssp             HHHHS
T ss_pred             HHHHh
Confidence            77776

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=86.29  E-value=6.6  Score=27.31  Aligned_cols=48  Identities=8%  Similarity=0.166  Sum_probs=42.6

Q ss_pred             EEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhcC
Q 032341           47 TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG   94 (142)
Q Consensus        47 t~~~~~~~fh~L~~~gi~ylcvtd~~~~~~~aF~FL~eI~~~F~~~y~   94 (142)
                      ....+++.|-|...+++.|+|+++.+..--..+.||..+-+-+..-++
T Consensus        49 ~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~   96 (142)
T 2vgl_S           49 FVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFH   96 (142)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            345689999999999999999999999999999999999988887776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	142
d1ifqa_	127	d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId	7e-24
d1ioua_	140	d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker	2e-09
d2fh5a1	129	d.110.4.4 (A:1-129) Signal recognition particle re	5e-04

>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Sec22b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.5 bits (217), Expect = 7e-24
 Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 10/101 (9%)

Query: 5   SLIYAFVARGN--VVLAEYTEFSGNFN-------SIAYQCLQKLPA-SNNKFTYNCDAHT 54
           S++   +AR    + LA   +             S A Q  +KL   S  + T    A T
Sbjct: 1   SVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 60

Query: 55  FNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGG 95
           F+Y+++ G  Y V+ + +  +++  A+LE +  EF  ++G 
Sbjct: 61  FHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGK 101

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (120), Expect = 2e-09
 Identities = 12/116 (10%), Positives = 36/116 (31%), Gaps = 11/116 (9%)

Query: 6   LIYAFVARGNVVLAEYTEFS----------GNFNSIAYQCLQKLPASNNKFTYNCDAHTF 55
            ++       + L+E  + S          G F +   + +     +  + +     +  
Sbjct: 7   GVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGERQSIEEGNYIG 66

Query: 56  N-YLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEF 110
           + Y    G    ++ D+    +     L ++ DE++  +   + A         + 
Sbjct: 67  HVYARSEGICGVLITDKQYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKM 122

>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: SRP alpha N-terminal domain-like
domain: Signal recognition particle receptor alpha subunit, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (82), Expect = 5e-04
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 9   AFVARGNVVLAEYTEFSGNF----NSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYT 64
              ++G +VL  +   S +     N++    L +    NN FT+  +A T  Y +DN + 
Sbjct: 6   TIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTH--EALTLKYKLDNQFE 63

Query: 65  YCVVADESSGRQIPMA--FLERVKDEFVSKYGGGKAATAPANGLNKEFGYS 113
              V        +      ++ V   F  KY       +  + LN  F + 
Sbjct: 64  LVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQ 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	142
d1ifqa_	127	Sec22b {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1ioua_	140	Synaptobrevin homolog 1 ykt6 {Baker's yeast (Sacch	99.75
d2fh5a1	129	Signal recognition particle receptor alpha subunit	98.32
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	96.32
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	94.98

>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Sec22b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.8e-31  Score=190.26  Aligned_cols=112  Identities=23%  Similarity=0.379  Sum_probs=98.3

Q ss_pred             eeEEEEEEcCC--eEEEeeeCCCCC-------HHHHHHHHHhcCCCC-CCeEEEEeCCeEEEEEEeCCEEEEEEecCCCC
Q 032341            5 SLIYAFVARGN--VVLAEYTEFSGN-------FNSIAYQCLQKLPAS-NNKFTYNCDAHTFNYLVDNGYTYCVVADESSG   74 (142)
Q Consensus         5 ~I~Ya~VArg~--~iLae~~~~~gn-------f~~~a~~iL~kl~~~-~~k~t~~~~~~~fh~L~~~gi~ylcvtd~~~~   74 (142)
                      +|+||+|||+.  +||||+++.+++       +.++|+.||++++|+ +.|.|++.|+|.|||++++|++||||||+++|
T Consensus         1 sil~t~IaR~~DgL~L~~s~~~~~~~~~~~~~~k~qak~ll~kl~~~~~~r~s~~~~~y~fHy~~~~gi~yl~i~d~~~~   80 (127)
T d1ifqa_           1 SVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP   80 (127)
T ss_dssp             CCCEEEEEETTTCCEEEEECCCTTCCHHHHHHHHHHHHHHHTTCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred             CeEEEEEEEecCCcEEEEEeccccccchhHHHHHHHHHHHHHhCCCCCCCcEEEEECCEEEEEEecCCeEEEEEEccccC
Confidence            58999999974  899999866553       245799999999764 68999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCCccCCCCCChhhHHHHHHH
Q 032341           75 RQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGYSVVIL  117 (142)
Q Consensus        75 ~~~aF~FL~eI~~~F~~~y~~~~~~~a~~ysl~~~F~~~l~~l  117 (142)
                      +++||+||+||+++|.++|+.......+||+| .+|+..|++.
T Consensus        81 ~~laF~fLeei~~eF~~~y~~~i~~~~rpy~F-i~Fd~~iqk~  122 (127)
T d1ifqa_          81 KKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSF-IEFDTFIQKT  122 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTTTTCCSTTTT-GGGHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhhhhhhhcccCCcch-HHHHHHHHHH
Confidence            99999999999999999998655555679999 4899999543

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=2e-18  Score=124.47  Aligned_cols=120  Identities=14%  Similarity=0.126  Sum_probs=87.5

Q ss_pred             eeEEEEEEc--C--CeEEEeeeCCC-------CCHHH----HHHHHHhcCCCCCCeEEEEeCCeEEE-EEEeCCEEEEEE
Q 032341            5 SLIYAFVAR--G--NVVLAEYTEFS-------GNFNS----IAYQCLQKLPASNNKFTYNCDAHTFN-YLVDNGYTYCVV   68 (142)
Q Consensus         5 ~I~Ya~VAr--g--~~iLae~~~~~-------gnf~~----~a~~iL~kl~~~~~k~t~~~~~~~fh-~L~~~gi~ylcv   68 (142)
                      =|++-.|.+  +  .++|+...+.+       ++.++    +++.+.++.++ +.|.+++.++|.|| |+.++|++|+||
T Consensus         2 kl~~~~v~~~~~~~~~~L~~a~Dlssf~ffqR~svkE~~~f~sr~i~~Rt~~-g~r~sv~~~~y~~h~yv~~~gl~~l~i   80 (140)
T d1ioua_           2 RIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA-GERQSIEEGNYIGHVYARSEGICGVLI   80 (140)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEECCSSCCTTHHHHHHHHHHHHHHHHHHHCCS-SSEEEEEETTEEEEEECCSSSCEEEEE
T ss_pred             eEEEEEEEEcCCCCcEEEeeeccccccceeehHhHHHHHHHHHHHHhhcCCC-CceEEEEcCCeEEEEEEeeCCEEEEEE
Confidence            344555555  2  37777665543       22233    68999999987 57999999999999 788899999999


Q ss_pred             ecCCCCcccHHHHHHHHHHHHHhhcCCCCCCccCCCCCChhhHHHHHHHhhchhccccCCCCC
Q 032341           69 ADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGYSVVILILKPMNRRFSCYSS  131 (142)
Q Consensus        69 td~~~~~~~aF~FL~eI~~~F~~~y~~~~~~~a~~ysl~~~F~~~l~~lm~~~~~~~~n~~~~  131 (142)
                      ||++||+++||.||++|.++|.++|+...|. +.+.+.+..+.+.|+     +.+.+|+|++.
T Consensus        81 ~d~~Yp~r~AF~~L~~i~~eF~~~~~~~~~~-~i~~~~~~~~~~~l~-----~~l~kYQdP~~  137 (140)
T d1ioua_          81 TDKQYPVRPAYTLLNKILDEYLVAHPKEEWA-DVTETNDALKMKQLD-----TYISKYQDPSQ  137 (140)
T ss_dssp             BCTTSCHHHHHHHHHHHHHHHHHSSCHHHHT-TCSCCCTTTSCHHHH-----HHHHHTTSSCG
T ss_pred             ECCCcchHHHHHHHHHHHHHHHHHcChHhhh-hhhccccccchHHHH-----HHHHHhCchhh
Confidence            9999999999999999999999999854333 233444444456664     33345877653

>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: SRP alpha N-terminal domain-like
domain: Signal recognition particle receptor alpha subunit, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=7.3e-07  Score=62.34  Aligned_cols=112  Identities=15%  Similarity=0.182  Sum_probs=77.8

Q ss_pred             ceeEEEEEEcCCeEEEeeeCCCCCH----HHHHHHHHhcCCCCCCeEEEEeCCeEEEEEEeC--CEEEEEEecCCCCccc
Q 032341            4 KSLIYAFVARGNVVLAEYTEFSGNF----NSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN--GYTYCVVADESSGRQI   77 (142)
Q Consensus         4 m~I~Ya~VArg~~iLae~~~~~gnf----~~~a~~iL~kl~~~~~k~t~~~~~~~fh~L~~~--gi~ylcvtd~~~~~~~   77 (142)
                      |.=..+.+.+|+.||..|+..+.++    ..+.+.+|-.=..  +..++..|+|..++-.+|  |++|++|-.+-..-.-
T Consensus         1 MiD~f~IftkGGiVLW~~~~~~~~~~~~IN~LI~~vlLEER~--~~~~~~~d~y~lkw~~~Ne~~lvfV~vYQ~il~l~y   78 (129)
T d2fh5a1           1 MVDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERG--GNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTY   78 (129)
T ss_dssp             SCSEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHH
T ss_pred             CccEEEEEeCCeEEEEeecCCCcccchhHHHHHHHhheeccc--CCCceeECCEEEEEEEeccCCEEEEEEEhhhhchHH
Confidence            3345788999999999986544443    4455555543222  234577899999999876  5999999888766666


Q ss_pred             HHHHHHHHHHHHHhhcCCCCC------CccCCCCCChhhHHHHHHH
Q 032341           78 PMAFLERVKDEFVSKYGGGKA------ATAPANGLNKEFGYSVVIL  117 (142)
Q Consensus        78 aF~FL~eI~~~F~~~y~~~~~------~~a~~ysl~~~F~~~l~~l  117 (142)
                      .=.||++|+..|...|++...      ....++.|+.+|...|+++
T Consensus        79 vd~lL~~i~~~F~~~y~~~l~~~~~~~~~~~~~~Fd~~F~~~l~~~  124 (129)
T d2fh5a1          79 VDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREA  124 (129)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccccccccchHHHHHHHHHHH
Confidence            679999999999999973211      1124678889999988765