Citrus Sinensis ID: 032349

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKLE
Secondary Structure (PSIPRED)
cEEEEEEEEccccEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccEEEEccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccEHHEEEccccHHHHHHHHHHHHHHHHccccccccEEEEcccEEEEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHcHHHHccHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MIRFILLQNRQGKTRlakyyvpledsekhkvEYEVHRLVvnrdpkftnfveFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKLE
Flexible Loop (DISEMBL)
mirfillqnrqgktrlakyyvpledsekhkveYEVHRlvvnrdpkftnfveFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFIlagelqetsKRAIIERMGELEKLE
Low Complexity Region (SEG)
MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKLE
Disordered region (IsUnstruct)
**RFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQ******************
Disordered Region (DISOPRED)
MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKL*
Disordered Region (DISEMBL)
MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKLE
Disordered Region (DISPRO)
MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEK**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
Q84WL9	142	AP-2 complex subunit sigm	yes	no	1.0	1.0	0.957	4e-74
O50016	132	AP-2 complex subunit sigm	N/A	no	0.908	0.977	0.977	2e-68
Q7SAQ1	143	AP-2 complex subunit sigm	N/A	no	1.0	0.993	0.692	1e-52
Q54H39	142	AP-2 complex subunit sigm	yes	no	0.992	0.992	0.680	1e-51
Q4ICG5	143	AP-2 complex subunit sigm	yes	no	1.0	0.993	0.664	5e-51
Q4WS49	145	AP-2 complex subunit sigm	yes	no	1.0	0.979	0.673	1e-50
Q5BFF8	145	AP-2 complex subunit sigm	yes	no	1.0	0.979	0.673	2e-50
P62744	142	AP-2 complex subunit sigm	yes	no	1.0	1.0	0.619	3e-47
Q5R940	142	AP-2 complex subunit sigm	yes	no	1.0	1.0	0.619	3e-47
P62743	142	AP-2 complex subunit sigm	yes	no	1.0	1.0	0.619	3e-47

>sp|Q84WL9|AP2S_ARATH AP-2 complex subunit sigma OS=Arabidopsis thaliana GN=AP17 PE=2 SV=1

 Score =  276 bits (705), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 136/142 (95%), Positives = 139/142 (97%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRD KFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFS+CVDITDNELAYLE IHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQETSKRAIIERMGELEKLE 142
           GELQETSKRAIIERM ELEKL+
Sbjct: 121 GELQETSKRAIIERMSELEKLQ 142

Component of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. AP2S1/AP17 is a subunit of the plasma membrane adaptor. The complex binds polyphosphoinositides.
Arabidopsis thaliana (taxid: 3702)

>sp|O50016|AP2S1_MAIZE AP-2 complex subunit sigma OS=Zea mays GN=AP-17 PE=2 SV=1

 Score =  256 bits (655), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 128/131 (97%), Positives = 129/131 (98%), Gaps = 2/131 (1%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV--YLILDEFI 118
           RYAGLFFS+CVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV  YLILDEFI
Sbjct: 61  RYAGLFFSICVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYRYLILDEFI 120

Query: 119 LAGELQETSKR 129
           LAGELQETSKR
Sbjct: 121 LAGELQETSKR 131

Component of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. AP2S1/AP17 is a subunit of the plasma membrane adaptor. The complex binds polyphosphoinositides.

Zea mays (taxid: 4577)

>sp|Q7SAQ1|AP2S_NEUCR AP-2 complex subunit sigma OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=aps-2 PE=3 SV=1

 Score =  204 bits (520), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 99/143 (69%), Positives = 117/143 (81%), Gaps = 1/143 (0%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIY 59
           M+ FIL+QNRQGKTRLAK+YVP  D EK K++ E+HRLV  RD K+ +NFVEFR HKV+Y
Sbjct: 1   MLSFILIQNRQGKTRLAKWYVPYSDEEKIKLKGEIHRLVAPRDQKYQSNFVEFRNHKVVY 60

Query: 60  RRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFIL 119
           RRYAGLFF  CVD  DNELAYLE IH FVE+LD FF NVCELDLVFNF+KVY ILDE  L
Sbjct: 61  RRYAGLFFCACVDTNDNELAYLEAIHFFVEVLDSFFGNVCELDLVFNFYKVYAILDEVFL 120

Query: 120 AGELQETSKRAIIERMGELEKLE 142
           AGE++ETSK+ ++ R+  L+KLE
Sbjct: 121 AGEIEETSKQVVLTRLEHLDKLE 143

Component of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q54H39|AP2S_DICDI AP-2 complex subunit sigma OS=Dictyostelium discoideum GN=ap2s1 PE=3 SV=2

 Score =  201 bits (511), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/141 (68%), Positives = 117/141 (82%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MI FIL+QNRQGKTRL+K+Y P ED EK K+ +E+H++V +R+ KFTNFVEFRTH+++YR
Sbjct: 1   MIHFILIQNRQGKTRLSKWYTPYEDVEKRKLSHEIHKIVNSRETKFTNFVEFRTHRIVYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFS+CVD TDNEL  LE IHLFVE+LD +F NVCELDLVFNF+KVY I+DE  LA
Sbjct: 61  RYAGLFFSVCVDPTDNELFCLEAIHLFVEVLDAYFGNVCELDLVFNFYKVYAIIDEVFLA 120

Query: 121 GELQETSKRAIIERMGELEKL 141
           GEL E SK  I++RM  L+ L
Sbjct: 121 GELMEPSKHVILQRMEFLDNL 141

Component of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.

Dictyostelium discoideum (taxid: 44689)

>sp|Q4ICG5|AP2S_GIBZE AP-2 complex subunit sigma OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=APS2 PE=3 SV=1

 Score =  199 bits (506), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 95/143 (66%), Positives = 116/143 (81%), Gaps = 1/143 (0%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIY 59
           M+ FIL+QNRQGKTRLAK+Y P  D +K K++ EVHRLV  RD K+ +NFVEFR +K++Y
Sbjct: 1   MLSFILIQNRQGKTRLAKWYAPFSDEQKIKLKGEVHRLVAPRDQKYQSNFVEFRNNKIVY 60

Query: 60  RRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFIL 119
           RRYAGLFF  CVD  DNELA+LE IH FVE+LD FF NVCELDLVFNF+KVY ILDE  L
Sbjct: 61  RRYAGLFFCACVDTNDNELAFLEAIHFFVEVLDAFFGNVCELDLVFNFYKVYAILDEVFL 120

Query: 120 AGELQETSKRAIIERMGELEKLE 142
           AGE++ETSK+ ++ R+  L+KLE
Sbjct: 121 AGEIEETSKQVVLTRLEHLDKLE 143

Component of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

>sp|Q4WS49|AP2S_ASPFU AP-2 complex subunit sigma OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=aps2 PE=3 SV=1

 Score =  197 bits (502), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 97/144 (67%), Positives = 118/144 (81%), Gaps = 2/144 (1%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEF-RTHKVI 58
           ++ FIL+QNRQGKTRLAK+Y P  D EK K++ EVHRLV  RD K+ +NFVEF R+ K++
Sbjct: 2   VLSFILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIV 61

Query: 59  YRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFI 118
           YRRYAGLFF +CVD TDNELAYLE IH FVE+LD FF NVCELDLVFNF+KVY ILDE  
Sbjct: 62  YRRYAGLFFCVCVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVF 121

Query: 119 LAGELQETSKRAIIERMGELEKLE 142
           LAGE++ETSK+ ++ R+  L+KLE
Sbjct: 122 LAGEIEETSKQVVLTRLEHLDKLE 145

Component of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q5BFF8|AP2S_EMENI AP-2 complex subunit sigma OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=aps2 PE=3 SV=1

 Score =  197 bits (500), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/144 (67%), Positives = 117/144 (81%), Gaps = 2/144 (1%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEF-RTHKVI 58
           ++ FIL+QNRQGKTRLAK+Y P  D EK K++ EVHRLV  RD K+ +NFVEF R+ K++
Sbjct: 2   VLSFILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIV 61

Query: 59  YRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFI 118
           YRRYAGLFF  CVD TDNELAYLE IH FVE+LD FF NVCELDLVFNF+KVY ILDE  
Sbjct: 62  YRRYAGLFFCACVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVF 121

Query: 119 LAGELQETSKRAIIERMGELEKLE 142
           LAGE++ETSK+ ++ R+  L+KLE
Sbjct: 122 LAGEIEETSKQVVLTRLEHLDKLE 145

Component of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|P62744|AP2S1_RAT AP-2 complex subunit sigma OS=Rattus norvegicus GN=Ap2s1 PE=2 SV=1

 Score =  186 bits (472), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/142 (61%), Positives = 113/142 (79%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFIL+QNR GKTRLAK+Y+  +D EK K+  EVH +V  RD K TNFVEFR  K+IYR
Sbjct: 1   MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE  LA
Sbjct: 61  RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120

Query: 121 GELQETSKRAIIERMGELEKLE 142
           GE++ETS+  +++++  L+ LE
Sbjct: 121 GEIRETSQTKVLKQLLMLQSLE 142

Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein Transport via Transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold but is itself unable to bind directly to membrane components. Clathrin-associated adaptor protein (AP) complexes which can bind directly to both the clathrin lattice and to the lipid and protein components of membranes are considered to be the major clathrin adaptors contributing the CCV formation. AP-2 also serves as a cargo receptor to selectively sort the membrane proteins involved in receptor-mediated endocytosis. AP-2 seems to play a role in the recycling of synaptic vesicle membranes from the presynaptic surface. AP-2 recognizes Y-X-X-[FILMV] (Y-X-X-Phi) and [ED]-X-X-X-L-[LI] endocytosis signal motifs within the cytosolic tails of transmembrane cargo molecules. AP-2 may also play a role in maintaining normal post-endocytic trafficking through the ARF6-regulated, non-clathrin pathway. The AP-2 alpha and AP-2 sigma subunits are thought to contribute to the recognition of the [ED]-X-X-X-L-[LI] motif.

Rattus norvegicus (taxid: 10116)

>sp|Q5R940|AP2S1_PONAB AP-2 complex subunit sigma OS=Pongo abelii GN=AP2S1 PE=2 SV=1

 Score =  186 bits (472), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/142 (61%), Positives = 113/142 (79%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFIL+QNR GKTRLAK+Y+  +D EK K+  EVH +V  RD K TNFVEFR  K+IYR
Sbjct: 1   MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE  LA
Sbjct: 61  RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120

Query: 121 GELQETSKRAIIERMGELEKLE 142
           GE++ETS+  +++++  L+ LE
Sbjct: 121 GEIRETSQTKVLKQLLMLQSLE 142

Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein Transport via Transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold but is itself unable to bind directly to membrane components. Clathrin-associated adaptor protein (AP) complexes which can bind directly to both the clathrin lattice and to the lipid and protein components of membranes are considered to be the major clathrin adaptors contributing the CCV formation. AP-2 also serves as a cargo receptor to selectively sort the membrane proteins involved in receptor-mediated endocytosis. AP-2 seems to play a role in the recycling of synaptic vesicle membranes from the presynaptic surface. AP-2 recognizes Y-X-X-[FILMV] (Y-X-X-Phi) and [ED]-X-X-X-L-[LI] endocytosis signal motifs within the cytosolic tails of transmembrane cargo molecules. AP-2 may also play a role in maintaining normal post-endocytic trafficking through the ARF6-regulated, non-clathrin pathway. The AP-2 alpha and AP-2 sigma subunits are thought to contribute to the recognition of the [ED]-X-X-X-L-[LI] motif.

Pongo abelii (taxid: 9601)

>sp|P62743|AP2S1_MOUSE AP-2 complex subunit sigma OS=Mus musculus GN=Ap2s1 PE=1 SV=1

 Score =  186 bits (472), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 88/142 (61%), Positives = 113/142 (79%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFIL+QNR GKTRLAK+Y+  +D EK K+  EVH +V  RD K TNFVEFR  K+IYR
Sbjct: 1   MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE  LA
Sbjct: 61  RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120

Query: 121 GELQETSKRAIIERMGELEKLE 142
           GE++ETS+  +++++  L+ LE
Sbjct: 121 GEIRETSQTKVLKQLLMLQSLE 142

Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via Transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold but is itself unable to bind directly to membrane components. Clathrin-associated adaptor protein (AP) complexes which can bind directly to both the clathrin lattice and to the lipid and protein components of membranes are considered to be the major clathrin adaptors contributing the CCV formation. AP-2 also serves as a cargo receptor to selectively sort the membrane proteins involved in receptor-mediated endocytosis. AP-2 seems to play a role in the recycling of synaptic vesicle membranes from the presynaptic surface. AP-2 recognizes Y-X-X-[FILMV] (Y-X-X-Phi) and [ED]-X-X-X-L-[LI] endocytosis signal motifs within the cytosolic tails of transmembrane cargo molecules. AP-2 may also play a role in maintaining normal post-endocytic trafficking through the ARF6-regulated, non-clathrin pathway. The AP-2 alpha and AP-2 sigma subunits are thought to contribute to the recognition of the [ED]-X-X-X-L-[LI] motif.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
115487800	142	Os12g0207300 [Oryza sativa Japonica Grou	1.0	1.0	0.992	2e-75
255538924	142	clathrin coat assembly protein ap17, put	1.0	1.0	0.992	3e-75
224083002	142	predicted protein [Populus trichocarpa]	1.0	1.0	0.992	3e-75
125578822	151	hypothetical protein OsJ_35559 [Oryza sa	0.992	0.933	0.992	4e-75
242067999	142	hypothetical protein SORBIDRAFT_05g00704	1.0	1.0	0.985	5e-75
125536086	151	hypothetical protein OsI_37796 [Oryza sa	0.992	0.933	0.992	5e-75
357438415	142	AP-2 complex subunit sigma-1 [Medicago t	1.0	1.0	0.985	5e-75
224065891	142	predicted protein [Populus trichocarpa]	1.0	1.0	0.992	8e-75
449437206	142	PREDICTED: AP-2 complex subunit sigma-li	1.0	1.0	0.985	9e-75
351721716	142	uncharacterized protein LOC100500054 [Gl	1.0	1.0	0.978	9e-75

>gi|115487800|ref|NP_001066387.1| Os12g0207300 [Oryza sativa Japonica Group] gi|242085198|ref|XP_002443024.1| hypothetical protein SORBIDRAFT_08g006500 [Sorghum bicolor] gi|17149110|gb|AAL35901.1|AF443601_1 clathrin assembly protein AP17-like protein [Oryza sativa] gi|77553342|gb|ABA96138.1| Clathrin coat assembly protein AP17, putative, expressed [Oryza sativa Japonica Group] gi|113648894|dbj|BAF29406.1| Os12g0207300 [Oryza sativa Japonica Group] gi|215697333|dbj|BAG91327.1| unnamed protein product [Oryza sativa Japonica Group] gi|241943717|gb|EES16862.1| hypothetical protein SORBIDRAFT_08g006500 [Sorghum bicolor]

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 141/142 (99%), Positives = 142/142 (100%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFS+CVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSMCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQETSKRAIIERMGELEKLE 142
           GELQETSKRAIIERMGELEKLE
Sbjct: 121 GELQETSKRAIIERMGELEKLE 142

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538924|ref|XP_002510527.1| clathrin coat assembly protein ap17, putative [Ricinus communis] gi|223551228|gb|EEF52714.1| clathrin coat assembly protein ap17, putative [Ricinus communis]

 Score =  286 bits (731), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 141/142 (99%), Positives = 142/142 (100%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQETSKRAIIERMGELEKLE 142
           GELQETSK+AIIERMGELEKLE
Sbjct: 121 GELQETSKKAIIERMGELEKLE 142

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083002|ref|XP_002306925.1| predicted protein [Populus trichocarpa] gi|118482928|gb|ABK93377.1| unknown [Populus trichocarpa] gi|118487844|gb|ABK95745.1| unknown [Populus trichocarpa] gi|118488818|gb|ABK96219.1| unknown [Populus trichocarpa x Populus deltoides] gi|222856374|gb|EEE93921.1| predicted protein [Populus trichocarpa]

 Score =  286 bits (731), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 141/142 (99%), Positives = 142/142 (100%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFF+LCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFALCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQETSKRAIIERMGELEKLE 142
           GELQETSKRAIIERMGELEKLE
Sbjct: 121 GELQETSKRAIIERMGELEKLE 142

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125578822|gb|EAZ19968.1| hypothetical protein OsJ_35559 [Oryza sativa Japonica Group]

 Score =  285 bits (729), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 140/141 (99%), Positives = 141/141 (100%)

Query: 2   IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
           IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR
Sbjct: 11  IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 70

Query: 62  YAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121
           YAGLFFS+CVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG
Sbjct: 71  YAGLFFSMCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 130

Query: 122 ELQETSKRAIIERMGELEKLE 142
           ELQETSKRAIIERMGELEKLE
Sbjct: 131 ELQETSKRAIIERMGELEKLE 151

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242067999|ref|XP_002449276.1| hypothetical protein SORBIDRAFT_05g007040 [Sorghum bicolor] gi|223942567|gb|ACN25367.1| unknown [Zea mays] gi|241935119|gb|EES08264.1| hypothetical protein SORBIDRAFT_05g007040 [Sorghum bicolor] gi|414591316|tpg|DAA41887.1| TPA: hypothetical protein ZEAMMB73_842750 [Zea mays]

 Score =  285 bits (729), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 140/142 (98%), Positives = 142/142 (100%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFS+CVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSICVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQETSKRAIIERMGELEKLE 142
           GELQETSK+AIIERMGELEKLE
Sbjct: 121 GELQETSKKAIIERMGELEKLE 142

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125536086|gb|EAY82574.1| hypothetical protein OsI_37796 [Oryza sativa Indica Group]

 Score =  285 bits (729), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 140/141 (99%), Positives = 141/141 (100%)

Query: 2   IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 61
           IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR
Sbjct: 11  IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 70

Query: 62  YAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121
           YAGLFFS+CVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG
Sbjct: 71  YAGLFFSMCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 130

Query: 122 ELQETSKRAIIERMGELEKLE 142
           ELQETSKRAIIERMGELEKLE
Sbjct: 131 ELQETSKRAIIERMGELEKLE 151

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438415|ref|XP_003589483.1| AP-2 complex subunit sigma-1 [Medicago truncatula] gi|217075070|gb|ACJ85895.1| unknown [Medicago truncatula] gi|355478531|gb|AES59734.1| AP-2 complex subunit sigma-1 [Medicago truncatula] gi|388497856|gb|AFK36994.1| unknown [Medicago truncatula]

 Score =  285 bits (728), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 140/142 (98%), Positives = 142/142 (100%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPK+TNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRTHKVIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQETSKRAIIERMGELEKLE 142
           GELQETSK+AIIERMGELEKLE
Sbjct: 121 GELQETSKKAIIERMGELEKLE 142

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065891|ref|XP_002301979.1| predicted protein [Populus trichocarpa] gi|222843705|gb|EEE81252.1| predicted protein [Populus trichocarpa]

 Score =  284 bits (727), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 141/142 (99%), Positives = 141/142 (99%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRD KFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQETSKRAIIERMGELEKLE 142
           GELQETSKRAIIERMGELEKLE
Sbjct: 121 GELQETSKRAIIERMGELEKLE 142

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437206|ref|XP_004136383.1| PREDICTED: AP-2 complex subunit sigma-like [Cucumis sativus] gi|449505752|ref|XP_004162559.1| PREDICTED: AP-2 complex subunit sigma-like [Cucumis sativus]

 Score =  284 bits (726), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 140/142 (98%), Positives = 142/142 (100%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQETSKRAIIERMGELEKLE 142
           GELQETSK+AIIERMGELEKLE
Sbjct: 121 GELQETSKKAIIERMGELEKLE 142

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721716|ref|NP_001236195.1| uncharacterized protein LOC100500054 [Glycine max] gi|255628845|gb|ACU14767.1| unknown [Glycine max] gi|388502922|gb|AFK39527.1| unknown [Lotus japonicus]

 Score =  284 bits (726), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 139/142 (97%), Positives = 142/142 (100%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPK+TNFVEFRTHK+IYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRTHKIIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQETSKRAIIERMGELEKLE 142
           GELQETSK+AIIERMGELEKLE
Sbjct: 121 GELQETSKKAIIERMGELEKLE 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2202415	142	AT1G47830 [Arabidopsis thalian	1.0	1.0	0.957	2.4e-69
DICTYBASE|DDB_G0289721	142	ap2s1 "sigma adaptin" [Dictyos	0.992	0.992	0.680	4.6e-50
UNIPROTKB|G4MVD4	143	MGG_01762 "AP-2 complex subuni	1.0	0.993	0.671	1.4e-48
ASPGD|ASPL0000061212	145	AN0722 [Emericella nidulans (t	1.0	0.979	0.673	1.8e-48
ZFIN|ZDB-GENE-040426-2174	142	ap2s1 "adaptor-related protein	1.0	1.0	0.626	4.8e-46
UNIPROTKB|Q17QC5	142	AP2S1 "AP-2 complex subunit si	1.0	1.0	0.619	1.6e-45
UNIPROTKB|E2RSJ0	142	AP2S1 "Uncharacterized protein	1.0	1.0	0.619	1.6e-45
UNIPROTKB|P53680	142	AP2S1 "AP-2 complex subunit si	1.0	1.0	0.619	1.6e-45
UNIPROTKB|F2Z4Z5	142	AP2S1 "Uncharacterized protein	1.0	1.0	0.619	1.6e-45
MGI|MGI:2141861	142	Ap2s1 "adaptor-related protein	1.0	1.0	0.619	1.6e-45

TAIR|locus:2202415 AT1G47830 [Arabidopsis thaliana (taxid:3702)]

 Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
 Identities = 136/142 (95%), Positives = 139/142 (97%)

Query:     1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
             MIRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRD KFTNFVEFRTHKVIYR
Sbjct:     1 MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYR 60

Query:    61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
             RYAGLFFS+CVDITDNELAYLE IHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct:    61 RYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query:   121 GELQETSKRAIIERMGELEKLE 142
             GELQETSKRAIIERM ELEKL+
Sbjct:   121 GELQETSKRAIIERMSELEKLQ 142

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0030125 "clathrin vesicle coat" evidence=ISS

DICTYBASE|DDB_G0289721 ap2s1 "sigma adaptin" [Dictyostelium discoideum (taxid:44689)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 96/141 (68%), Positives = 117/141 (82%)

Query:     1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
             MI FIL+QNRQGKTRL+K+Y P ED EK K+ +E+H++V +R+ KFTNFVEFRTH+++YR
Sbjct:     1 MIHFILIQNRQGKTRLSKWYTPYEDVEKRKLSHEIHKIVNSRETKFTNFVEFRTHRIVYR 60

Query:    61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
             RYAGLFFS+CVD TDNEL  LE IHLFVE+LD +F NVCELDLVFNF+KVY I+DE  LA
Sbjct:    61 RYAGLFFSVCVDPTDNELFCLEAIHLFVEVLDAYFGNVCELDLVFNFYKVYAIIDEVFLA 120

Query:   121 GELQETSKRAIIERMGELEKL 141
             GEL E SK  I++RM  L+ L
Sbjct:   121 GELMEPSKHVILQRMEFLDNL 141

GO:0030122 "AP-2 adaptor complex" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|G4MVD4 MGG_01762 "AP-2 complex subunit sigma" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 96/143 (67%), Positives = 115/143 (80%)

Query:     1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIY 59
             M+ FIL+QNRQGKTRLAK+Y P  D EK K++ EVHRLV  RD K+ +NFVEFR +K++Y
Sbjct:     1 MLSFILIQNRQGKTRLAKWYAPYSDEEKIKLKGEVHRLVAPRDQKYQSNFVEFRNNKLVY 60

Query:    60 RRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFIL 119
             RRYAGLFF  CVD  DNELA+LE IH FVE+LD FF NVCELDLVFNF+KVY ILDE  L
Sbjct:    61 RRYAGLFFCACVDTNDNELAFLEAIHFFVEVLDAFFGNVCELDLVFNFYKVYAILDEVFL 120

Query:   120 AGELQETSKRAIIERMGELEKLE 142
             AGE++ETSK  ++ R+  L+KLE
Sbjct:   121 AGEIEETSKTVVLTRLEHLDKLE 143

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000061212 AN0722 [Emericella nidulans (taxid:162425)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 97/144 (67%), Positives = 117/144 (81%)

Query:     1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF-TNFVEF-RTHKVI 58
             ++ FIL+QNRQGKTRLAK+Y P  D EK K++ EVHRLV  RD K+ +NFVEF R+ K++
Sbjct:     2 VLSFILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVEFKRSTKIV 61

Query:    59 YRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFI 118
             YRRYAGLFF  CVD TDNELAYLE IH FVE+LD FF NVCELDLVFNF+KVY ILDE  
Sbjct:    62 YRRYAGLFFCACVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVF 121

Query:   119 LAGELQETSKRAIIERMGELEKLE 142
             LAGE++ETSK+ ++ R+  L+KLE
Sbjct:   122 LAGEIEETSKQVVLTRLEHLDKLE 145

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030122 "AP-2 adaptor complex" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

ZFIN|ZDB-GENE-040426-2174 ap2s1 "adaptor-related protein complex 2, sigma 1 subunit" [Danio rerio (taxid:7955)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 89/142 (62%), Positives = 114/142 (80%)

Query:     1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
             MIRFIL+QNR GKTRLAK+Y+  +D EK K+  EVH +V  RD K TNFVEFR  K+IYR
Sbjct:     1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60

Query:    61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
             RYAGL+F +CVD+TDN LAYLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE  LA
Sbjct:    61 RYAGLYFCICVDVTDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120

Query:   121 GELQETSKRAIIERMGELEKLE 142
             GE++ETS+  +++++  L+ LE
Sbjct:   121 GEIRETSQTKVLKQLLMLQSLE 142

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB|Q17QC5 AP2S1 "AP-2 complex subunit sigma" [Bos taurus (taxid:9913)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 88/142 (61%), Positives = 113/142 (79%)

Query:     1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
             MIRFIL+QNR GKTRLAK+Y+  +D EK K+  EVH +V  RD K TNFVEFR  K+IYR
Sbjct:     1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60

Query:    61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
             RYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE  LA
Sbjct:    61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120

Query:   121 GELQETSKRAIIERMGELEKLE 142
             GE++ETS+  +++++  L+ LE
Sbjct:   121 GEIRETSQTKVLKQLLMLQSLE 142

GO:0030122 "AP-2 adaptor complex" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E2RSJ0 AP2S1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 88/142 (61%), Positives = 113/142 (79%)

Query:     1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
             MIRFIL+QNR GKTRLAK+Y+  +D EK K+  EVH +V  RD K TNFVEFR  K+IYR
Sbjct:     1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60

Query:    61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
             RYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE  LA
Sbjct:    61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120

Query:   121 GELQETSKRAIIERMGELEKLE 142
             GE++ETS+  +++++  L+ LE
Sbjct:   121 GEIRETSQTKVLKQLLMLQSLE 142

GO:0030122 "AP-2 adaptor complex" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|P53680 AP2S1 "AP-2 complex subunit sigma" [Homo sapiens (taxid:9606)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 88/142 (61%), Positives = 113/142 (79%)

Query:     1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
             MIRFIL+QNR GKTRLAK+Y+  +D EK K+  EVH +V  RD K TNFVEFR  K+IYR
Sbjct:     1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60

Query:    61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
             RYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE  LA
Sbjct:    61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120

Query:   121 GELQETSKRAIIERMGELEKLE 142
             GE++ETS+  +++++  L+ LE
Sbjct:   121 GEIRETSQTKVLKQLLMLQSLE 142

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030122 "AP-2 adaptor complex" evidence=TAS

GO:0048268 "clathrin coat assembly" evidence=TAS

GO:0008565 "protein transporter activity" evidence=NAS

GO:0030100 "regulation of endocytosis" evidence=TAS

GO:0005215 "transporter activity" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0030666 "endocytic vesicle membrane" evidence=TAS

GO:0030669 "clathrin-coated endocytic vesicle membrane" evidence=TAS

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0050690 "regulation of defense response to virus by virus" evidence=TAS

UNIPROTKB|F2Z4Z5 AP2S1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 88/142 (61%), Positives = 113/142 (79%)

Query:     1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
             MIRFIL+QNR GKTRLAK+Y+  +D EK K+  EVH +V  RD K TNFVEFR  K+IYR
Sbjct:     1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60

Query:    61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
             RYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE  LA
Sbjct:    61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120

Query:   121 GELQETSKRAIIERMGELEKLE 142
             GE++ETS+  +++++  L+ LE
Sbjct:   121 GEIRETSQTKVLKQLLMLQSLE 142

GO:0030122 "AP-2 adaptor complex" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

MGI|MGI:2141861 Ap2s1 "adaptor-related protein complex 2, sigma 1 subunit" [Mus musculus (taxid:10090)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 88/142 (61%), Positives = 113/142 (79%)

Query:     1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
             MIRFIL+QNR GKTRLAK+Y+  +D EK K+  EVH +V  RD K TNFVEFR  K+IYR
Sbjct:     1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60

Query:    61 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
             RYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE  LA
Sbjct:    61 RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120

Query:   121 GELQETSKRAIIERMGELEKLE 142
             GE++ETS+  +++++  L+ LE
Sbjct:   121 GEIRETSQTKVLKQLLMLQSLE 142

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0030122 "AP-2 adaptor complex" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P53680	AP2S1_HUMAN	No assigned EC number	0.6197	1.0	1.0	yes	no
Q5BFF8	AP2S_EMENI	No assigned EC number	0.6736	1.0	0.9793	yes	no
Q54H39	AP2S_DICDI	No assigned EC number	0.6808	0.9929	0.9929	yes	no
Q5R940	AP2S1_PONAB	No assigned EC number	0.6197	1.0	1.0	yes	no
Q17QC5	AP2S1_BOVIN	No assigned EC number	0.6197	1.0	1.0	yes	no
Q9Y7L6	AP2S_SCHPO	No assigned EC number	0.6013	1.0	0.9930	yes	no
O50016	AP2S1_MAIZE	No assigned EC number	0.9770	0.9084	0.9772	N/A	no
Q4WS49	AP2S_ASPFU	No assigned EC number	0.6736	1.0	0.9793	yes	no
P62744	AP2S1_RAT	No assigned EC number	0.6197	1.0	1.0	yes	no
Q84WL9	AP2S_ARATH	No assigned EC number	0.9577	1.0	1.0	yes	no
P62743	AP2S1_MOUSE	No assigned EC number	0.6197	1.0	1.0	yes	no
Q00381	AP2S_YEAST	No assigned EC number	0.4965	0.9929	0.9591	yes	no
Q4ICG5	AP2S_GIBZE	No assigned EC number	0.6643	1.0	0.9930	yes	no
Q7SAQ1	AP2S_NEUCR	No assigned EC number	0.6923	1.0	0.9930	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Sb08g006500.1 hypothetical protein (142 aa) (Sorghum bicolor)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	142
COG5030	152	COG5030, APS2, Clathrin adaptor complex, small sub	4e-59
pfam01217	142	pfam01217, Clat_adaptor_s, Clathrin adaptor comple	1e-58
COG5541	187	COG5541, RET3, Vesicle coat complex COPI, zeta sub	0.001

>gnl|CDD|227363 COG5030, APS2, Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

 Score =  179 bits (456), Expect = 4e-59
 Identities = 76/142 (53%), Positives = 100/142 (70%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MI+F+L+ NRQGK RL K+Y P+ D E+ K+  +++ L+  R PK +NF+E +  K++YR
Sbjct: 1   MIKFVLIFNRQGKPRLVKWYTPVSDPEQAKLIADIYELISARKPKESNFIEGKNEKIVYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYA L+F   VD  DNEL  LE IH FVEILD FF NVCELDL+FNF KVY ILDE IL 
Sbjct: 61  RYATLYFVFGVDNDDNELIILELIHNFVEILDRFFGNVCELDLIFNFQKVYAILDEMILG 120

Query: 121 GELQETSKRAIIERMGELEKLE 142
           GE+ E+SK  ++E +  L+   
Sbjct: 121 GEIIESSKNEVLEHVYALDAES 142

Length = 152

>gnl|CDD|110234 pfam01217, Clat_adaptor_s, Clathrin adaptor complex small chain

 Score =  177 bits (452), Expect = 1e-58
 Identities = 78/142 (54%), Positives = 102/142 (71%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MI+ IL+ NRQGK RLAK+Y P  D E+ K+  +++ L+  R PK +NF+EF   KVIY+
Sbjct: 1   MIKAILIFNRQGKPRLAKWYTPYSDPEQQKLIEQIYALISARKPKMSNFIEFNDLKVIYK 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYA L+F + VD  DNEL  LE IH FVE LD +F NVCELDL+FNF KVYLILDE ++ 
Sbjct: 61  RYATLYFVVIVDDQDNELIILELIHRFVESLDRYFGNVCELDLIFNFEKVYLILDEMVMG 120

Query: 121 GELQETSKRAIIERMGELEKLE 142
           GE+ ETSK  ++ R+  L++L 
Sbjct: 121 GEILETSKNEVLHRVALLDELA 142

Length = 142

>gnl|CDD|227828 COG5541, RET3, Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 36.8 bits (85), Expect = 0.001
 Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 9/143 (6%)

Query: 2   IRFILLQNRQGKTRLAKYYVPLEDSEKH-------KVEYEVHRLVVNRDPKFTNFVE-FR 53
           +  +L+ + QG+    KYY P   SE H       K E E  + +  +  K    +  F 
Sbjct: 8   VEALLILDSQGERIYRKYYQPPHRSEGHQLVFNSVKKEKEFEKKLAEKTAKDRESILMFY 67

Query: 54  THKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVC-ELDLVFNFHKVYL 112
              V+ +R   +   +   + +NE    +        L         + ++  N+ ++ L
Sbjct: 68  DRLVMCKRLDDVLLYIVSPMEENEPFLGQVFDEIRAALILIVKTPTDKRNVWENYDQIVL 127

Query: 113 ILDEFILAGELQETSKRAIIERM 135
           ++DE I  G + ET    I +R+
Sbjct: 128 LVDETIDEGVILETKSDEIADRV 150

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	100.0
COG5030	152	APS2 Clathrin adaptor complex, small subunit [Intr	100.0
KOG0936	182	consensus Clathrin adaptor complex, small subunit	100.0
KOG0934	145	consensus Clathrin adaptor complex, small subunit	100.0
KOG0935	143	consensus Clathrin adaptor complex, small subunit	100.0
KOG3343	175	consensus Vesicle coat complex COPI, zeta subunit	99.97
KOG0938	446	consensus Adaptor complexes medium subunit family	99.96
KOG2740	418	consensus Clathrin-associated protein medium chain	99.89
KOG0937	424	consensus Adaptor complexes medium subunit family	99.88
COG5541	187	RET3 Vesicle coat complex COPI, zeta subunit [Post	99.86
KOG2635	512	consensus Medium subunit of clathrin adaptor compl	99.24
PF15001	189	AP-5_subunit_s1: AP-5 complex subunit sigma-1	97.49
PF03164	415	Mon1: Trafficking protein Mon1; InterPro: IPR00435	96.54
PF08923	119	MAPKK1_Int: Mitogen-activated protein kinase kinas	95.04
PF04099	142	Sybindin: Sybindin-like family ; InterPro: IPR0072	94.1
KOG0862	216	consensus Synaptobrevin/VAMP-like protein SEC22 [I	92.93
PF13774	83	Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3	92.22
KOG0997	523	consensus Uncharacterized conserved protein Sand [	88.05
KOG0859	217	consensus Synaptobrevin/VAMP-like protein [Intrace	87.77
KOG0781	587	consensus Signal recognition particle receptor, al	85.78
COG5122	134	TRS23 Transport protein particle (TRAPP) complex s	82.49

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=100.00  E-value=3.3e-43  Score=251.79  Aligned_cols=141  Identities=38%  Similarity=0.616  Sum_probs=131.7

Q ss_pred             CeEEEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHHHhcCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHHHH
Q 032349            1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAY   80 (142)
Q Consensus         1 MI~~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~~   80 (142)
                      ||+|++|+|++|+++++|||++.+..+++++.+++.+.+..+++..||++.++++++||+++++|||+++++.++||+++
T Consensus         1 MI~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~~   80 (141)
T PF01217_consen    1 MIKAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKSSRNSKQSPIFEHDNYRIVYKRYSDLYFVVVGDENENELLL   80 (141)
T ss_dssp             SEEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHHTSSSSSTSEEEETTEEEEEEEETTEEEEEEESSTSBHHHH
T ss_pred             CEEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHHhcccccceeeecccceeeeEeeccEEEEEEeecccchHHH
Confidence            99999999999999999999988888888888888888877777779999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHhHHHHHHHHHHHHhCcEEeecCHHHHHHHHHhhhhc
Q 032349           81 LECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKL  141 (142)
Q Consensus        81 le~l~~~v~~l~~~f~~v~e~~i~~nf~~v~~lLDE~id~G~~~etd~~~i~~~i~~~~~~  141 (142)
                      +++|++++++|+.|||++||+++++||+.+|++||||+|+|+|+|||+++|++|++++|+.
T Consensus        81 ~e~l~~~v~~l~~~~~~v~e~~i~~N~~~v~~~LDEiid~G~i~etd~~~I~~~v~~~~~~  141 (141)
T PF01217_consen   81 LEFLHRLVEVLDDYFGNVSEKDILENFDLVYLILDEIIDGGIILETDPNVILKRVTMQDSA  141 (141)
T ss_dssp             HHHHHHHHHHHHHHHSS-SHHHHHHTHHHHHHHHHHHEETTEES--THHHHHHHHHHCCC-
T ss_pred             HHHHHHhhhhhhhhhccccHHHHHHCHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999999999874

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.5e-41  Score=237.69  Aligned_cols=141  Identities=54%  Similarity=0.907  Sum_probs=136.8

Q ss_pred             CeEEEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHHHhcCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHHHH
Q 032349            1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAY   80 (142)
Q Consensus         1 MI~~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~~   80 (142)
                      ||++++++|++|++|+.|||.+.+.++|.++.+++++.+++|+++.|++++..+.++|||||++|||+++++.++||+++
T Consensus         1 ~i~~vli~nrqgk~RL~K~yt~~~~~e~~kli~~i~~lIs~R~~ke~N~~e~k~~kiVYrrYA~LyF~f~Vd~~dnEl~i   80 (152)
T COG5030           1 MIKFVLIFNRQGKPRLVKWYTPVSDPEQAKLIADIYELISARKPKESNFIEGKNEKIVYRRYATLYFVFGVDNDDNELII   80 (152)
T ss_pred             CeEEEEEEcCCCceeeeEeeccCCcHHHHHHHHHHHHHHHcCCchhcccccccCcEEEeeecCcEEEEEEEcCCCCcchH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHhHHHHHHHHHHHHhCcEEeecCHHHHHHHHHhhhhc
Q 032349           81 LECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKL  141 (142)
Q Consensus        81 le~l~~~v~~l~~~f~~v~e~~i~~nf~~v~~lLDE~id~G~~~etd~~~i~~~i~~~~~~  141 (142)
                      ++.+|.|+++|++|||+|||.++++||.++|.+||||+.+|.++||++..+++++...++.
T Consensus        81 L~lIh~FVE~lDr~FgnVCELdlIFNF~kv~~ILdE~i~gG~i~Es~~~~vl~~v~~lda~  141 (152)
T COG5030          81 LELIHNFVEILDRFFGNVCELDLIFNFQKVYAILDEMILGGEIIESSKNEVLEHVYALDAE  141 (152)
T ss_pred             HHHHHHHHHHHHHHhccceeeEeEeeHHHHHHHHHHHHhCCeeeecCHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999877654

>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.8e-38  Score=222.48  Aligned_cols=141  Identities=42%  Similarity=0.747  Sum_probs=135.7

Q ss_pred             CeEEEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHHHhcCCCCCCceEEe----C--CeEEEEEEeCCEEEEEEecCC
Q 032349            1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEF----R--THKVIYRRYAGLFFSLCVDIT   74 (142)
Q Consensus         1 MI~~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----~--~~~~vy~~~~~l~~~~~~~~~   74 (142)
                      ||+|++|+|++|++|+.|||++.+.++|+.+.+++|..+++|++..|+|++.    |  +.+++||+|+.|||+.++|++
T Consensus         1 MI~AvlifNn~gkPRL~KFY~p~~~~~Qq~lir~vf~lvs~R~~n~~nFLe~~~l~g~~d~rlIYrhYATLYFvfvvD~s   80 (182)
T KOG0936|consen    1 MIKAVLIFNNKGKPRLVKFYTPVDEEKQQQLIREVFHLVSKRPDNVCNFLEGNSLIGGSDNRLIYRHYATLYFVFVVDSS   80 (182)
T ss_pred             CeeEEEEecCCCCcceeeecCcCChHHHHHHHHHHHHHHHcCCchHhhhhccccccCCccceeehheeeeEEEEEEEcCC
Confidence            9999999999999999999999999999999999999999999888998864    3  789999999999999999999


Q ss_pred             cCHHHHHHHHHHHHHHHHHHhccccHHHHHHhHHHHHHHHHHHHhCcEEeecCHHHHHHHHHhhhhc
Q 032349           75 DNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKL  141 (142)
Q Consensus        75 ~Nel~~le~l~~~v~~l~~~f~~v~e~~i~~nf~~v~~lLDE~id~G~~~etd~~~i~~~i~~~~~~  141 (142)
                      |+||.++++++.||++|+++|.++||.|+++|+++++.+|+|++.+|.++||+.+.|.+.+..++|+
T Consensus        81 EsEL~iLDLIQvfVEtLDkCF~nVcELDliF~~~k~h~iL~EiV~GGmVlETn~neIv~av~~~nkl  147 (182)
T KOG0936|consen   81 ESELGILDLIQVFVETLDKCFENVCELDLIFNWQKVHAILAEIVMGGMVLETNMNEIVAAVDEQNKL  147 (182)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhhhhhheeeHHHHHHHHHHHHhCCeEEeccHHHHHHHHHHhchh
Confidence            9999999999999999999999999999999999999999999999999999999999999998876

>KOG0934 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-38  Score=220.83  Aligned_cols=140  Identities=52%  Similarity=0.934  Sum_probs=135.5

Q ss_pred             CeEEEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHHHhcCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHHHH
Q 032349            1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAY   80 (142)
Q Consensus         1 MI~~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~~   80 (142)
                      ||++++++|++|+++|+|||.+.+..+|+.+++++.+.+.+|++++|++++++++++|||||++|||+++...++|||++
T Consensus         1 mi~f~LlvsrQGk~rL~k~y~~~~~~er~~i~re~i~~~Lar~pk~csfie~kd~kvVyrryasl~f~~~v~~~dNEL~~   80 (145)
T KOG0934|consen    1 MIKFFLLVSRQGKTRLQKWYEALSIKERKKIERELIKSVLARKPKMCSFIEYKDEKVVYRRYASLFFCVGVEDNDNELAI   80 (145)
T ss_pred             CeEEEEEEeccCceehhHHHhhhcHHHHHHHHHHHHHHHHhCCcccccchhccCceehhhhhhhEEEEEEEecCCchhhH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHhHHHHHHHHHHHHhCcEEeecCHHHHHHHHHhhhh
Q 032349           81 LECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEK  140 (142)
Q Consensus        81 le~l~~~v~~l~~~f~~v~e~~i~~nf~~v~~lLDE~id~G~~~etd~~~i~~~i~~~~~  140 (142)
                      +|++|+++++|+.|||+|||.|+++||.++|.+|||++-+|-++||+.+...+-++.+|-
T Consensus        81 LE~IH~~vE~lDkYFg~VCELDiiFNfekay~ILde~~~~g~~~e~~k~~~~~~i~~ad~  140 (145)
T KOG0934|consen   81 LEFIHNYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEIQETSKNDVLKAIAQADL  140 (145)
T ss_pred             HHHHHHHHHHHHHHhccceeeEEEEehHhHHHHHHHHhcCcchHhhhcccHHHHHHHhhh
Confidence            999999999999999999999999999999999999999999999999998888877664

>KOG0935 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-37  Score=212.37  Aligned_cols=142  Identities=70%  Similarity=1.122  Sum_probs=133.6

Q ss_pred             CeEEEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHHHhcCCCCCCceEEeCCeEEEEE-EeCCEEEEEEecCCcCHHH
Q 032349            1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR-RYAGLFFSLCVDITDNELA   79 (142)
Q Consensus         1 MI~~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~-~~~~l~~~~~~~~~~Nel~   79 (142)
                      ||+++++.|++|+++++|||-+.+.+++++++.++++.+..|+.+..++++..+.+.+|+ +|++|||+.+++.-+||++
T Consensus         1 mi~FILiqNr~Gk~RLak~yv~~dd~ek~~~~~~vh~lvs~Rd~K~~~~~~~~~~~~~~~rryagLyf~~~vd~tDnela   80 (143)
T KOG0935|consen    1 MIRFILIQNRAGKTRLAKWYVQFDDDEKQKLIEEVHALVTVRDAKHTNFVEFRNFKIIYRRRYAGLYFCICVDVTDNELA   80 (143)
T ss_pred             CeEEEEEEccccceeheeeeeccCchHHHHHHHHHHHHHhhccchhhhheeeeeceEEEEEeeCCEEEEEEEecCCchHH
Confidence            899999999999999999999888888899999999999999988877777776666655 9999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHhHHHHHHHHHHHHhCcEEeecCHHHHHHHHHhhhhcC
Q 032349           80 YLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKLE  142 (142)
Q Consensus        80 ~le~l~~~v~~l~~~f~~v~e~~i~~nf~~v~~lLDE~id~G~~~etd~~~i~~~i~~~~~~~  142 (142)
                      .++-+|.|+++|++||+++||.++.+||.+||.++|||+-+|.++||+...+++|+.+.++++
T Consensus        81 yLe~IHlFVEvLd~fF~NVCELDlvFNFyKVy~i~DEm~l~GEi~Etsk~~vlerl~~L~~Le  143 (143)
T KOG0935|consen   81 YLEHIHLFVEVLDEFFHNVCELDLVFNFYKVYTIVDEMFLAGEIRETSKTKVLERLLMLQSLE  143 (143)
T ss_pred             HHHHHHHHHHHHHHHhccccceeeeeeeeeHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999999999999999999999999999998864

>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.1e-31  Score=190.47  Aligned_cols=134  Identities=24%  Similarity=0.369  Sum_probs=124.2

Q ss_pred             eEEEEeecCCCCeeEEecCCCC--C-hhhHHHHHHHHHHHHhcCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHH
Q 032349            2 IRFILLQNRQGKTRLAKYYVPL--E-DSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNEL   78 (142)
Q Consensus         2 I~~i~iln~~G~~~l~k~Y~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel   78 (142)
                      +++++|+|++|+|+++|||.+.  + -++|+++|+.+|++++.   +.+.|..++|..+||+..-||+|+++++.+|||+
T Consensus         9 vk~iliLD~~G~Ri~aKYY~~~~~s~vkeqkaFEK~lF~KT~k---t~~eI~~ldg~~vvYk~~~Dl~fyv~G~~~ENEl   85 (175)
T KOG3343|consen    9 VKAILILDSDGKRILAKYYDDPHPSTVKEQKAFEKNLFSKTSK---TESEILLLDGNTVVYKSVIDLHFYVVGSEEENEL   85 (175)
T ss_pred             hheEEEEcCCCCEeeeeecCCCcchhHHHHHHHHHHHhccccc---ccceeEEecCcEEEEEecccEEEEEecCcchhHH
Confidence            6899999999999999999864  3 56789999999988754   2368999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcc-ccHHHHHHhHHHHHHHHHHHHhCcEEeecCHHHHHHHHHhh
Q 032349           79 AYLECIHLFVEILDHFFSN-VCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGEL  138 (142)
Q Consensus        79 ~~le~l~~~v~~l~~~f~~-v~e~~i~~nf~~v~~lLDE~id~G~~~etd~~~i~~~i~~~  138 (142)
                      ++.+.|+++.++++..+++ +.+..+++|++.+++++||++|+|.++||||+.|+.|++..
T Consensus        86 ~L~svL~~l~dal~llLr~nveKr~llEN~D~i~L~~DEiiD~GvILEtdp~~ia~rv~~~  146 (175)
T KOG3343|consen   86 MLMSVLTCLFDALSLLLRKNVEKRELLENLDLIFLALDEIIDGGVILETDPNQIAQRVALR  146 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHhChhHHHHHhhhccceeehhhhccCceEEecCHHHHHHHhccC
Confidence            9999999999999999976 89999999999999999999999999999999999999864

>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=9.6e-30  Score=201.12  Aligned_cols=134  Identities=19%  Similarity=0.241  Sum_probs=122.0

Q ss_pred             CeEEEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHH-HhcCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHHH
Q 032349            1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRL-VVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELA   79 (142)
Q Consensus         1 MI~~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~   79 (142)
                      ||+++|++|.+|++++.|.|++..    ++-..++|+. ++.+....||+..+|+++++|.+..+||+++++++|.|..+
T Consensus         1 misglfi~n~rGevlink~fr~dl----krs~~diFRv~vi~n~d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~   76 (446)
T KOG0938|consen    1 MISGLFIYNLRGEVLINKTFRDDL----KRSIVDIFRVQVINNLDVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAA   76 (446)
T ss_pred             CcceEEEEeccCcEEEehhhhhhh----hhhHHHHHHHhhhhccccCCCeeEecceeEEEEeeccEEEEEEecCCCchhh
Confidence            999999999999999999999765    3344455554 66665567999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHhHHHHHHHHHHHHhCcEEeecCHHHHHHHHHhh
Q 032349           80 YLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGEL  138 (142)
Q Consensus        80 ~le~l~~~v~~l~~~f~~v~e~~i~~nf~~v~~lLDE~id~G~~~etd~~~i~~~i~~~  138 (142)
                      ++|||..+.+++.+|||..+|+.|++||..+|++||||+|+|+||+|+|++++..++.+
T Consensus        77 v~eFl~kl~avm~aYfgk~~Eeaiknnf~lI~ElLDemld~G~pqnte~~al~~~is~~  135 (446)
T KOG0938|consen   77 VFEFLYKLDAVMNAYFGKDREEAIKNNFVLIYELLDEMLDFGIPQNTEPNALKAQISQK  135 (446)
T ss_pred             HHHHHHHHHHHHHHHhcccchhhhhhceEeHHHHHHHHHhcCCCccCChhHHHhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999988753

>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=4e-23  Score=164.54  Aligned_cols=134  Identities=20%  Similarity=0.181  Sum_probs=115.1

Q ss_pred             CeEEEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHHHhc--CCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHH
Q 032349            1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVN--RDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNEL   78 (142)
Q Consensus         1 MI~~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel   78 (142)
                      ||+++|+.|.+|+.+++|.|+....  .+.++..++..-.+  +.++..|++..+.+.+.-.-..+++|++++..+..||
T Consensus         1 mi~siflidtsg~l~lek~~~g~t~--~rsic~~f~e~~~~~~~~e~~ppvi~~p~hylfsv~~~~i~~~~~st~e~pPL   78 (418)
T KOG2740|consen    1 MILSIFLIDTSGDLLLEKHLKGSTV--VRSICDYFFEDQSSDDDLEHVPPVISTPHHYLFSVYRDLIFFCAVSTVETPPL   78 (418)
T ss_pred             CeeEEEEEcCCchhhhhHhhCCcee--eeehHHHHHHhhhhccccccCCceecCCceeeeeeeccCcEEEEEEeccCCCh
Confidence            9999999999999999999994221  15677777766433  3344567777777777766667899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHhHHHHHHHHHHHHhCcEEeecCHHHHHHHHH
Q 032349           79 AYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMG  136 (142)
Q Consensus        79 ~~le~l~~~v~~l~~~f~~v~e~~i~~nf~~v~~lLDE~id~G~~~etd~~~i~~~i~  136 (142)
                      ++.|||+++++++..|||.++|..|++|++.||++||||+|+|+|..||++.+.+-|+
T Consensus        79 ~~iefL~rv~dv~~eyFg~~s~~~Ik~N~~vv~ell~emiDnGfpl~tE~NiLke~i~  136 (418)
T KOG2740|consen   79 MVIEFLHRVVDVLLEYFGGLSESKIKDNVVVVYELLDEMIDNGFPLVTEPNILKELIP  136 (418)
T ss_pred             hHHHHHHHHHHHHHHHhcccCHhHhhcceeeHHHHHHHHHHcCCCcccChhHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999888765

>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.2e-21  Score=159.65  Aligned_cols=134  Identities=14%  Similarity=0.191  Sum_probs=118.9

Q ss_pred             eEEEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHHHhcC--CCCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHHH
Q 032349            2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNR--DPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELA   79 (142)
Q Consensus         2 I~~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~   79 (142)
                      +++++++|.+|+++++|.|+....   ......|+.++...  .....|++.++|..++|.+++++|++++++.+.|+..
T Consensus         1 ~sa~fild~~G~~lisr~yr~dv~---~s~~~~F~~~l~~~e~~~~~~p~l~~~g~~~~~ik~s~lylv~~~~~n~~a~~   77 (424)
T KOG0937|consen    1 ASAVFILDHKGEVLISRDYRGDVP---MSSTEKFFRKLFEKEEGDESPPFLVHDGSRFIHIKHSNLYLVAGTRPNVSAAL   77 (424)
T ss_pred             CceEEEEcCCCcEeEeecccccCC---hhhhhhHHHHHhhhcccCCCCCeEEeCCceEEEEeecceEEEEEeccCCCHHH
Confidence            579999999999999999996531   34455666554432  2334799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHhHHHHHHHHHHHHhCcEEeecCHHHHHHHHHhh
Q 032349           80 YLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGEL  138 (142)
Q Consensus        80 ~le~l~~~v~~l~~~f~~v~e~~i~~nf~~v~~lLDE~id~G~~~etd~~~i~~~i~~~  138 (142)
                      +++||+++++++.+||+.+.|..+.+||+.+|++|||++|.|+||.|+++.+.+.+++.
T Consensus        78 v~~~l~~~~~v~~~y~~~l~e~si~~n~vlvyElLde~mDFGypQ~t~s~iL~~yi~~~  136 (424)
T KOG0937|consen   78 VLSFLYAVADVFGDYLSELEEESIRDNFVLVYELLDEVMDFGYPQTTDSEILKNYITQK  136 (424)
T ss_pred             HHHHHHHHHHHHHHHhccCCccceecchHHHHHHHHHHhccCCcccchHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999998865

>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=2.7e-21  Score=138.33  Aligned_cols=133  Identities=18%  Similarity=0.277  Sum_probs=119.8

Q ss_pred             eEEEEeecCCCCeeEEecCCCCC-----------hhhHHHHHHHHHHHHhcCCCCCCceEEeCCeEEEEEEeCCEEEEEE
Q 032349            2 IRFILLQNRQGKTRLAKYYVPLE-----------DSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLC   70 (142)
Q Consensus         2 I~~i~iln~~G~~~l~k~Y~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~   70 (142)
                      +.|++|+|++|++++.|||.|+.           -++++.+++.++++....   +..|..+.+..++|+++-|+.++.+
T Consensus         8 v~a~LilDsqGeriy~kyy~pph~~eg~~~vFnsvkkekefek~l~eKt~k~---~~~Il~f~d~lV~~k~~~dv~~yiv   84 (187)
T COG5541           8 VEALLILDSQGERIYRKYYQPPHRSEGHQLVFNSVKKEKEFEKKLAEKTAKD---RESILMFYDRLVMCKRLDDVLLYIV   84 (187)
T ss_pred             eeeeEEecCCccchhhhhcCCcccccccchhhcchhHHHHHHHHHHHHhhcC---ccceeeEcceeeeeeeehhEEEEEe
Confidence            68999999999999999998753           235677888888876532   3588999999999999999999999


Q ss_pred             ecCCcCHHHHHHHHHHHHHHHHHHhccc-cHHHHHHhHHHHHHHHHHHHhCcEEeecCHHHHHHHHHh
Q 032349           71 VDITDNELAYLECIHLFVEILDHFFSNV-CELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGE  137 (142)
Q Consensus        71 ~~~~~Nel~~le~l~~~v~~l~~~f~~v-~e~~i~~nf~~v~~lLDE~id~G~~~etd~~~i~~~i~~  137 (142)
                      ++-++||.++-+.+..+-.+|.-.++.. .++.+.+|++.+..+.||.+|+|.+++|+++.|+.|++.
T Consensus        85 ~~meeNE~~l~q~f~~ir~Al~li~k~~~dkr~v~enYDqivl~vdEtid~Gvilet~s~~ia~rv~K  152 (187)
T COG5541          85 SPMEENEPFLGQVFDEIRAALILIVKTPTDKRNVWENYDQIVLLVDETIDEGVILETKSDEIADRVPK  152 (187)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHcCCcchhhHHhhhceEEEeeehhcccceEeecChHHHHHhCCC
Confidence            9999999999999999999999999985 677799999999999999999999999999999999875

>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=1.4e-10  Score=95.23  Aligned_cols=134  Identities=19%  Similarity=0.292  Sum_probs=117.2

Q ss_pred             eEEEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHHHhcCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHHHHH
Q 032349            2 IRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYL   81 (142)
Q Consensus         2 I~~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~~l   81 (142)
                      +-+.-+.+++|+.+++|.|+.++..+-..+..+|.+.+..  .++..+++-+++++||+...++|++.+|..+.|-|--+
T Consensus         3 vlaa~i~t~~Gk~ivsRqf~~Msr~RIEgLl~aFpkLv~~--~~qhT~vEt~~VRYVYqP~d~lY~vLITtk~SNIleDl   80 (512)
T KOG2635|consen    3 VLAASINTKTGKAIVSRQFREMSRSRIEGLLAAFPKLVSA--GKQHTFVETDSVRYVYQPLDNLYIVLITTKQSNILEDL   80 (512)
T ss_pred             EEEEEEeecCCceeeehHhHhhhHHHHHHHHHHhHHhhcc--CCCccEEecccEEEEEEecccEEEEEEeccccchhhHH
Confidence            4466778899999999999988755545566777755542  23468999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccccHHHHHHhHHHHHHHHHHHHhCcEEeecCHHHHHHHHHh
Q 032349           82 ECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGE  137 (142)
Q Consensus        82 e~l~~~v~~l~~~f~~v~e~~i~~nf~~v~~lLDE~id~G~~~etd~~~i~~~i~~  137 (142)
                      +.|+.|..+...|+..+.|+.|.+|--.....+||++--||-...+...|+.++.|
T Consensus        81 ~TL~Lfskvipey~~slde~eI~~~~FelifAFDEivsLGyre~v~laQikty~eM  136 (512)
T KOG2635|consen   81 ETLRLFSKVIPEYCSSLDEKEILENAFELIFAFDEIVSLGYRENVNLAQIKTYLEM  136 (512)
T ss_pred             HHHHHHHHhchhhhhhhhHHHHHHhhhhhhhccchhhhhcccccccHHHhhhhhcc
Confidence            99999999999999999999999999999999999999999999998888877654

>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1

Probab=97.49  E-value=0.013  Score=43.98  Aligned_cols=79  Identities=19%  Similarity=0.331  Sum_probs=70.4

Q ss_pred             CeEEEEEEeCCEEEEEEecCCcCHHHHHHHHHHHHHHHHHHhcccc-HHHHHHhHHHHHHHHHHHHhCcEEeecCHHHHH
Q 032349           54 THKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVC-ELDLVFNFHKVYLILDEFILAGELQETSKRAII  132 (142)
Q Consensus        54 ~~~~vy~~~~~l~~~~~~~~~~Nel~~le~l~~~v~~l~~~f~~v~-e~~i~~nf~~v~~lLDE~id~G~~~etd~~~i~  132 (142)
                      ...++|....++.|..+.+..||-++.-.+|+.++..+..+++.++ -..+...-+.+..+|+..+=.|-.+--+.+.+.
T Consensus       103 ~k~vvW~~v~~l~ftLVce~hEN~lLa~~~L~~~~~~l~~~~~~l~~~~e~l~k~d~i~aiL~~fLP~GQLLFlN~~~~k  182 (189)
T PF15001_consen  103 PKIVVWLGVGSLCFTLVCEPHENRLLAENTLRLFIRHLLEHLKILSQPSEVLLKSDRILAILHRFLPHGQLLFLNHRFVK  182 (189)
T ss_pred             CcEEEeeccCCEEEEEEecCchhHHHHHHHHHHHHHHHHHHHHHhCcHHHhhhhHHHHHHHHHHhCCCCcEEEEcHHHHH
Confidence            4577899999999999999999999999999999999999997754 477888999999999999999988888877744

>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain

Probab=96.54  E-value=0.068  Score=44.69  Aligned_cols=86  Identities=7%  Similarity=0.173  Sum_probs=57.3

Q ss_pred             EEEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHHHh---cCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHHH
Q 032349            3 RFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVV---NRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELA   79 (142)
Q Consensus         3 ~~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~   79 (142)
                      +-+||++..||+++++|   .++++-..+..-+...++   ..+ ..-.-+..|++++|+...+-|+++++++.+|++-.
T Consensus        12 kh~fIlS~AGKPIysr~---G~e~~l~~~~g~~~aiiS~~~~~~-d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~   87 (415)
T PF03164_consen   12 KHFFILSSAGKPIYSRY---GDEDKLSSLMGVIQAIISFFQSNG-DELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQ   87 (415)
T ss_pred             CeEEEECCCCceeEEec---CChHHHHHHHHHHHHHHHHHHhCC-CcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHH
Confidence            45899999999999999   222222233333333322   222 21234567899999999999999999999999877


Q ss_pred             HHHHHHHHHHHHH
Q 032349           80 YLECIHLFVEILD   92 (142)
Q Consensus        80 ~le~l~~~v~~l~   92 (142)
                      +..-|+.+...+-
T Consensus        88 l~~qL~~ly~qil  100 (415)
T PF03164_consen   88 LRKQLDYLYSQIL  100 (415)
T ss_pred             HHHHHHHHHHHHH
Confidence            7655554444333

In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].

>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=95.04  E-value=0.75  Score=32.00  Aligned_cols=92  Identities=10%  Similarity=0.084  Sum_probs=60.6

Q ss_pred             eEEEEeecCCCCeeEEecCCCCCh-hhHHHHHHHHHHHH---hc--CCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCc
Q 032349            2 IRFILLQNRQGKTRLAKYYVPLED-SEKHKVEYEVHRLV---VN--RDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITD   75 (142)
Q Consensus         2 I~~i~iln~~G~~~l~k~Y~~~~~-~~~~~~~~~~~~~~---~~--~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~   75 (142)
                      +.++++-|++|=+++.=...+... .-+..+...+-...   .+  -.....-+..++++.+++.....+++.++++++.
T Consensus        17 l~~I~itDrDGvpi~~v~~~~~~~~~~~~~~~~tf~~a~~Q~~KL~lG~nk~ii~~Y~~~qvv~~~~~pl~it~ias~~a   96 (119)
T PF08923_consen   17 LQAIVITDRDGVPIAKVSSDSAPESAMRPSLLSTFAMAIDQASKLGLGKNKSIIAYYDSYQVVQFNKLPLYITFIASSNA   96 (119)
T ss_dssp             EEEEEEEETTS-EEEEEE-TTS-GGGGSHHHHCCHHHHHHHHTTSSS-SEEEEEEEESSEEEEEEEETTEEEEEEEETTS
T ss_pred             eEEEEEECCCCcEEEEecCCCCcchhhhhHHHHHHHHHhhcccccCCCCceEEEEEeCCEEEEEEeCCCeEEEEEecCCC
Confidence            679999999998887644443322 11233333322111   11  1112245667899999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q 032349           76 NELAYLECIHLFVEILDH   93 (142)
Q Consensus        76 Nel~~le~l~~~v~~l~~   93 (142)
                      |--+++.+-+.+...++.
T Consensus        97 N~G~il~l~~~L~~~l~~  114 (119)
T PF08923_consen   97 NTGLILSLEEELAPILNE  114 (119)
T ss_dssp             -HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHhHHHHHHHHHH
Confidence            999999988887777764

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.

>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses

Probab=94.10  E-value=1.3  Score=31.56  Aligned_cols=93  Identities=19%  Similarity=0.207  Sum_probs=53.6

Q ss_pred             eEEEEeecCCCCeeEEecCCCC--------ChhhHHHHHHHHHH------HHhcCCC-----CCCce--EEeCCeEEE-E
Q 032349            2 IRFILLQNRQGKTRLAKYYVPL--------EDSEKHKVEYEVHR------LVVNRDP-----KFTNF--VEFRTHKVI-Y   59 (142)
Q Consensus         2 I~~i~iln~~G~~~l~k~Y~~~--------~~~~~~~~~~~~~~------~~~~~~~-----~~~~i--~~~~~~~~v-y   59 (142)
                      |.+++|+|+.|..++.|-|...        ...+++.+-.-++.      ++...+.     ..+.+  +..+.+++- |
T Consensus         1 IyslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~   80 (142)
T PF04099_consen    1 IYSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCF   80 (142)
T ss_dssp             EEEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEE
T ss_pred             CeEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEEEEeCCEEEEEE
Confidence            6899999999999999988742        22334444444433      2222111     11223  345677666 4


Q ss_pred             EEeCCEEEEEEecCCcCHHHHHHHHHHHHHHHHHHh
Q 032349           60 RRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFF   95 (142)
Q Consensus        60 ~~~~~l~~~~~~~~~~Nel~~le~l~~~v~~l~~~f   95 (142)
                      ..--++-|++++|.+... ..-++++.+.+...+|-
T Consensus        81 eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~dyV  115 (142)
T PF04099_consen   81 ETPTGLKFVLITDPNVPS-LRDELLRIYYELYVDYV  115 (142)
T ss_dssp             E-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHHHHH
T ss_pred             EcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHHHHH
Confidence            445689999999998854 34556677778777763

Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.

>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.93  E-value=3.3  Score=31.73  Aligned_cols=71  Identities=8%  Similarity=0.128  Sum_probs=58.2

Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHHHHHHHHHHHHHHHHHHhcc
Q 032349           26 SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSN   97 (142)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~~le~l~~~v~~l~~~f~~   97 (142)
                      .+.++-.+.+++++...++..|. ++-|.+.+-|...+++..++.++.+.+--+.+.+|..+.+-+.+-+++
T Consensus        31 ~e~r~q~K~L~kkLs~~s~~r~S-ietg~f~fHfli~~~Vcylvicd~~yP~kLAF~YLedL~~EF~~~~~~  101 (216)
T KOG0862|consen   31 LEYRQQAKSLFKKLSQQSPTRCS-IETGPFVFHFLIESGVCYLVICDKSYPRKLAFSYLEDLAQEFDKSYGK  101 (216)
T ss_pred             HHHHHHHHHHHHhccCCCCcccc-cccCCeEEEEEecCCEEEEEEecCCCcHHHHHHHHHHHHHHHHHhccc
Confidence            45566677777777554344454 566778999999999999999999999999999999999999988875

>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D

Probab=92.22  E-value=1.7  Score=27.61  Aligned_cols=49  Identities=8%  Similarity=-0.023  Sum_probs=42.8

Q ss_pred             ceEEeCCeEEEEEEeCCEEEEEEecCCcCHHHHHHHHHHHHHHHHHHhc
Q 032349           48 NFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFS   96 (142)
Q Consensus        48 ~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~~le~l~~~v~~l~~~f~   96 (142)
                      -.+..+++.+-|...+++.++++++.+.+.-..+.||..+.+-+..-++
T Consensus        17 ~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~   65 (83)
T PF13774_consen   17 MSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYG   65 (83)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCT
T ss_pred             EEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcC
Confidence            3566888988888899999999999999999999999999888888776

...

>KOG0997 consensus Uncharacterized conserved protein Sand [Function unknown]

Probab=88.05  E-value=7  Score=33.56  Aligned_cols=80  Identities=10%  Similarity=0.071  Sum_probs=50.5

Q ss_pred             EEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHHHhcCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHHHHHHH
Q 032349            4 FILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLEC   83 (142)
Q Consensus         4 ~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~~le~   83 (142)
                      -+||+...|+++++++=.............++..-+...... --.+..+|+++++-+.+-++++++...+...--++.-
T Consensus       119 hifilseaGKPiyS~~gs~e~l~stmGv~~alISf~q~~~~~-i~si~a~g~k~vfl~kspl~LvA~s~t~~Sa~qL~~q  197 (523)
T KOG0997|consen  119 HIFILSEAGKPIYSRHGSDEALSSTMGVMQALISFFQVSGLA-ITSIHAFGNKLVFLQKSPLLLVAVSRTSQSAAQLLQQ  197 (523)
T ss_pred             eEEEEecCCCceeeecCcHHHHHHHHHHHHHHHHHHhhCCce-EEEEEecCceEEEEecCcEEEEEEcccccCHHHHHHH
Confidence            489999999999999865422211122233332222112222 1234568899999999999999999988766555443


Q ss_pred             H
Q 032349           84 I   84 (142)
Q Consensus        84 l   84 (142)
                      |
T Consensus       198 L  198 (523)
T KOG0997|consen  198 L  198 (523)
T ss_pred             H
Confidence            3

>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.77  E-value=10  Score=28.84  Aligned_cols=87  Identities=9%  Similarity=-0.003  Sum_probs=59.3

Q ss_pred             eecCCCCeeEEecCCC-CChhhHHHHHHHHHHHHhcCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHHHHHHHHH
Q 032349            7 LQNRQGKTRLAKYYVP-LEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIH   85 (142)
Q Consensus         7 iln~~G~~~l~k~Y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~~le~l~   85 (142)
                      -+=.+|-++|++|=.- ...   ..+.+++-+++.+.++ .---..+|+|.+-|.+-+++.++++++.+.---.-+.||.
T Consensus         6 s~VARGTvvLaeft~~~gNf---~sva~qiL~klp~~~n-~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaFLe   81 (217)
T KOG0859|consen    6 SFVARGTVILAEFTEFSGNF---SSIAAQILQKLPSSSN-SKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAFLE   81 (217)
T ss_pred             EEEecceEEEEeeeeccCCH---HHHHHHHHHhCCCCCC-CceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHHHH
Confidence            3447899999997542 111   2333344444432221 1123467999999999999999999998888888888998


Q ss_pred             HHHHHHHHHhcc
Q 032349           86 LFVEILDHFFSN   97 (142)
Q Consensus        86 ~~v~~l~~~f~~   97 (142)
                      .+.+-+..-+|.
T Consensus        82 ~Ik~~F~k~YG~   93 (217)
T KOG0859|consen   82 RIKEDFKKRYGG   93 (217)
T ss_pred             HHHHHHHHHhcc
Confidence            887776665553

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.78  E-value=23  Score=30.79  Aligned_cols=112  Identities=12%  Similarity=0.064  Sum_probs=65.5

Q ss_pred             CeEEEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHH-HhcCCCCCCceEEeCCeEEEEEEeCC--EEEEEEecCCcCH
Q 032349            1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRL-VVNRDPKFTNFVEFRTHKVIYRRYAG--LFFSLCVDITDNE   77 (142)
Q Consensus         1 MI~~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~vy~~~~~--l~~~~~~~~~~Ne   77 (142)
                      |+-.+.|+++.|-++....=-.....   .....+.+. +.++.+...+ +.++.+++-|...++  +.|+++-..--+=
T Consensus         1 Mld~faIFtkgG~vLw~~~~~~~~~~---~~in~lI~~~ll~er~~~~~-~~~~~yTlk~q~~N~~~lvfvvvfqki~~L   76 (587)
T KOG0781|consen    1 MLDQFAIFTKGGLVLWCYQEVGDNLK---GPINALIRSVLLSERGGVNS-FTFEAYTLKYQLDNQYSLVFVVVFQKILTL   76 (587)
T ss_pred             CcceeeeecCCcEEEEEecccchhcc---chHHHHHHHHHHHhhcCccc-CchhheeEeeeecCCccEEEEEEEeccchh
Confidence            88999999999977643221111111   123344443 3332222223 778888888888775  4456665544454


Q ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHHHh-HHHHHHHHHH
Q 032349           78 LAYLECIHLFVEILDHFFSNVCELDLVFN-FHKVYLILDE  116 (142)
Q Consensus        78 l~~le~l~~~v~~l~~~f~~v~e~~i~~n-f~~v~~lLDE  116 (142)
                      ..+-.+|....+.+..-|+..+-..++-| ++...++|++
T Consensus        77 ~yv~~ll~~v~~~f~e~~~~~~~~~l~~n~~~~~~e~lk~  116 (587)
T KOG0781|consen   77 TYVDKLLNDVLNLFREKYDTQSALSLLNNTFDFQEELLKL  116 (587)
T ss_pred             hhHHHHHHHHHHHHHHHhccchHHHhhhhhHHHHHHHHHH
Confidence            55566677777777776766555666666 4455666654

>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=82.49  E-value=14  Score=25.71  Aligned_cols=91  Identities=15%  Similarity=0.203  Sum_probs=53.2

Q ss_pred             eEEEEeecCCCCeeEEecCCCCChh----hHHHH---HHHHHHHHhcCCC--CCC--ceEEeCC-eEEEEEEeCCEEEEE
Q 032349            2 IRFILLQNRQGKTRLAKYYVPLEDS----EKHKV---EYEVHRLVVNRDP--KFT--NFVEFRT-HKVIYRRYAGLFFSL   69 (142)
Q Consensus         2 I~~i~iln~~G~~~l~k~Y~~~~~~----~~~~~---~~~~~~~~~~~~~--~~~--~i~~~~~-~~~vy~~~~~l~~~~   69 (142)
                      +.+++|.|++|..++.|-|.+...+    +---+   ...++....+..+  ..+  ..+..++ ...+|+..-++-|++
T Consensus         3 ve~~~iINksGglifqref~~~et~lnsneyLiLastlhgV~aI~tq~~p~~gssg~~~l~~~~f~m~I~qT~TG~kFV~   82 (134)
T COG5122           3 VEQFFIINKSGGLIFQREFGEGETELNSNEYLILASTLHGVSAILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTGTKFVF   82 (134)
T ss_pred             eeEEEEEecCCcEEEEEeccCCccccCcccEEEEeechhhhhhhhhhcccCCCCCceEEEEeccEEEEEEEecCCcEEEE
Confidence            7899999999999999999532110    00000   1111111111111  112  2444555 356799999999999


Q ss_pred             Ee-cCCcCHHHHHHHHHHHHHHHHHHh
Q 032349           70 CV-DITDNELAYLECIHLFVEILDHFF   95 (142)
Q Consensus        70 ~~-~~~~Nel~~le~l~~~v~~l~~~f   95 (142)
                      ++ +.-.|.++-   ++.+++...+|-
T Consensus        83 ~~~k~t~na~~q---l~kiY~lYsdYV  106 (134)
T COG5122          83 VAEKRTVNALFQ---LQKIYSLYSDYV  106 (134)
T ss_pred             EecCCchhHHHH---HHHHHHHHHHHh
Confidence            99 455555443   667777777764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	142
2vgl_S	142	Ap2 Clathrin Adaptor Core Length = 142		3e-48
1w63_Q	158	Ap1 Clathrin Adaptor Core Length = 158		1e-36

>pdb|2VGL|S Chain S, Ap2 Clathrin Adaptor Core Length = 142

Iteration: 1
 Score =  186 bits (472), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 88/142 (61%), Positives = 113/142 (79%)
Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFIL+QNR GKTRLAK+Y+  +D EK K+  EVH +V  RD K TNFVEFR  K+IYR
Sbjct: 1   MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60
Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE  LA
Sbjct: 61  RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120
Query: 121 GELQETSKRAIIERMGELEKLE 142
           GE++ETS+  +++++  L+ LE
Sbjct: 121 GEIRETSQTKVLKQLLMLQSLE 142

>pdb|1W63|Q Chain Q, Ap1 Clathrin Adaptor Core Length = 158

Iteration: 1
 Score =  148 bits (374), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 105/142 (73%)
Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           M+RF+LL +RQGK RL K+Y+   D E+ K+  E+ ++V+ R PK  +F+E+R  KV+Y+
Sbjct: 1   MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60
Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYA L+F   ++  DNEL  LE IH +VE+LD +F +VCELD++FNF K Y ILDEF++ 
Sbjct: 61  RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120
Query: 121 GELQETSKRAIIERMGELEKLE 142
           G++Q+TSK+++++ + + + L+
Sbjct: 121 GDVQDTSKKSVLKAIEQADLLQ 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	1e-42
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	2e-42
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	2e-36
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	2e-15

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142

 Score =  136 bits (344), Expect = 1e-42
 Identities = 88/142 (61%), Positives = 113/142 (79%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MIRFIL+QNR GKTRLAK+Y+  +D EK K+  EVH +V  RD K TNFVEFR  K+IYR
Sbjct: 1   MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYR 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYAGL+F +CVD+ DN LAYLE IH FVE+L+ +F NVCELDLVFNF+KVY ++DE  LA
Sbjct: 61  RYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLA 120

Query: 121 GELQETSKRAIIERMGELEKLE 142
           GE++ETS+  +++++  L+ LE
Sbjct: 121 GEIRETSQTKVLKQLLMLQSLE 142

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158

 Score =  137 bits (345), Expect = 2e-42
 Identities = 66/142 (46%), Positives = 105/142 (73%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           M+RF+LL +RQGK RL K+Y+   D E+ K+  E+ ++V+ R PK  +F+E+R  KV+Y+
Sbjct: 1   MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYK 60

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           RYA L+F   ++  DNEL  LE IH +VE+LD +F +VCELD++FNF K Y ILDEF++ 
Sbjct: 61  RYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMG 120

Query: 121 GELQETSKRAIIERMGELEKLE 142
           G++Q+TSK+++++ + + + L+
Sbjct: 121 GDVQDTSKKSVLKAIEQADLLQ 142

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153

 Score =  121 bits (305), Expect = 2e-36
 Identities = 28/137 (20%), Positives = 56/137 (40%), Gaps = 6/137 (4%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPL--EDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVI 58
            ++ IL+ +  G    AKYY        E+   E  +     +R       +E     V+
Sbjct: 12  TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFN-KTHRTDSEIALLE--GLTVV 68

Query: 59  YRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSN-VCELDLVFNFHKVYLILDEF 117
           Y+    L+F +     +NEL  +  ++   + L       V +  L+ N   ++L +DE 
Sbjct: 69  YKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEI 128

Query: 118 ILAGELQETSKRAIIER 134
           +  G + E+  + ++ R
Sbjct: 129 VDGGVILESDPQQVVHR 145

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M Length = 435

 Score = 70.8 bits (172), Expect = 2e-15
 Identities = 21/135 (15%), Positives = 56/135 (41%), Gaps = 2/135 (1%)

Query: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60
           MI  + + N +G+  +++ Y   +D  ++ V+     ++  R    +           + 
Sbjct: 1   MIGGLFIYNHKGEVLISRVYR--DDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHV 58

Query: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120
           + + ++ +       N     E ++   +++  +F  + E ++  NF  +Y +LDE +  
Sbjct: 59  KRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDF 118

Query: 121 GELQETSKRAIIERM 135
           G  Q +   A+   +
Sbjct: 119 GYPQNSETGALKTFI 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	100.0
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	100.0
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	100.0
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	100.0
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	100.0
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	96.85
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	95.51
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	95.43
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	94.79
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	94.16
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	94.08
3cpt_A	143	Mitogen-activated protein kinase kinase 1- interac	92.11
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	90.14
2fh5_A	185	Signal recognition particle receptor alpha subunit	88.03
3cue_C	159	Transport protein particle 18 kDa subunit; membran	85.36

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=100.00  E-value=6.1e-45  Score=260.30  Aligned_cols=142  Identities=62%  Similarity=1.060  Sum_probs=136.6

Q ss_pred             CeEEEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHHHhcCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHHHH
Q 032349            1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAY   80 (142)
Q Consensus         1 MI~~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~~   80 (142)
                      ||+|++|+|++|+++++|||++.+.++++++++.|++.+.++++++||++.+++++++|+++++|||+++++.++||+++
T Consensus         1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~   80 (142)
T 2vgl_S            1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAY   80 (142)
T ss_dssp             CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCCTTSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHHH
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCCCCCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHHH
Confidence            99999999999999999999998888899999999999887766789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHhHHHHHHHHHHHHhCcEEeecCHHHHHHHHHhhhhcC
Q 032349           81 LECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEKLE  142 (142)
Q Consensus        81 le~l~~~v~~l~~~f~~v~e~~i~~nf~~v~~lLDE~id~G~~~etd~~~i~~~i~~~~~~~  142 (142)
                      +|+||+++++|++|||++||.+|++||+++|++||||+|+|+|++|++..|++++..+++++
T Consensus        81 le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~~~~  142 (142)
T 2vgl_S           81 LEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQSLE  142 (142)
T ss_dssp             HHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhhccC
Confidence            99999999999999999999999999999999999999999999999999999999998764

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=100.00  E-value=4.5e-45  Score=265.34  Aligned_cols=140  Identities=46%  Similarity=0.899  Sum_probs=135.4

Q ss_pred             CeEEEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHHHhcCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHHHH
Q 032349            1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAY   80 (142)
Q Consensus         1 MI~~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~~   80 (142)
                      ||+|++|+|++|+++++|||++.+..+|+++++.+++.+.++++++||++.+++++++|+++++|||+++++.++||+++
T Consensus         1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~   80 (158)
T 1w63_Q            1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELIT   80 (158)
T ss_dssp             CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCSSSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHHH
T ss_pred             CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence            99999999999999999999999888889999999998888777789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccccHHHHHHhHHHHHHHHHHHHhCcEEeecCHHHHHHHHHhhhh
Q 032349           81 LECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELEK  140 (142)
Q Consensus        81 le~l~~~v~~l~~~f~~v~e~~i~~nf~~v~~lLDE~id~G~~~etd~~~i~~~i~~~~~  140 (142)
                      +|+||+++++|++|||++||.+|++||+++|++||||+|+|+|++||++.|++++++.++
T Consensus        81 le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~  140 (158)
T 1w63_Q           81 LELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADL  140 (158)
T ss_dssp             HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchh
Confidence            999999999999999999999999999999999999999999999999999999998765

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A

Probab=100.00  E-value=6.3e-45  Score=263.34  Aligned_cols=136  Identities=21%  Similarity=0.368  Sum_probs=125.7

Q ss_pred             CeEEEEeecCCCCeeEEecCCC--CChhhHHHHHHHHHHHHhcCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHH
Q 032349            1 MIRFILLQNRQGKTRLAKYYVP--LEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNEL   78 (142)
Q Consensus         1 MI~~i~iln~~G~~~l~k~Y~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel   78 (142)
                      ||+|++|+|++|+++++|||++  .+.++|+++++++++++. +++  ||++.+++++++||++++|||+++++.++||+
T Consensus        12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~-r~~--~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel   88 (153)
T 3tjz_C           12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH-RTD--SEIALLEGLTVVYKSSIDLYFYVIGSSYENEL   88 (153)
T ss_dssp             CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHS-SCC--CCEEEETTEEEEEEECSSCEEEEEEETTSCHH
T ss_pred             HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCC--CCEEEECCEEEEEEEECCEEEEEEEcCCCChH
Confidence            8999999999999999999997  466778899999999974 433  89999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh-ccccHHHHHHhHHHHHHHHHHHHhCcEEeecCHHHHHHHHHhhh
Q 032349           79 AYLECIHLFVEILDHFF-SNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGELE  139 (142)
Q Consensus        79 ~~le~l~~~v~~l~~~f-~~v~e~~i~~nf~~v~~lLDE~id~G~~~etd~~~i~~~i~~~~  139 (142)
                      +++|+||+++++|+.|| |++||++|++||+++|++||||+|+|+|+|||++.|++|+++.+
T Consensus        89 ~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~  150 (153)
T 3tjz_C           89 MLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRG  150 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhccc
Confidence            99999999999999999 89999999999999999999999999999999999999998754

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M

Probab=100.00  E-value=5e-35  Score=241.28  Aligned_cols=135  Identities=15%  Similarity=0.236  Sum_probs=122.0

Q ss_pred             CeEEEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHHHhc-CCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHHH
Q 032349            1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVN-RDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELA   79 (142)
Q Consensus         1 MI~~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~   79 (142)
                      ||+|++|+|++|+++++|||++...   +...+.|++.+.. +++.+||++.+++++++|+++++|||+++++.++||++
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~~~~---~~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~   77 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRDDIG---RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAM   77 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSSSCC---HHHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHH
T ss_pred             CeEEEEEECCCCCEEEEEecCCCCC---hhHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence            9999999999999999999997543   3345667777654 33457999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHhHHHHHHHHHHHHhCcEEeecCHHHHHHHHHhh
Q 032349           80 YLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGEL  138 (142)
Q Consensus        80 ~le~l~~~v~~l~~~f~~v~e~~i~~nf~~v~~lLDE~id~G~~~etd~~~i~~~i~~~  138 (142)
                      ++||||+++++|++|||++||.+|++||+++|++||||+|+|+|++||++.|.+++.+.
T Consensus        78 ~le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~  136 (435)
T 2vgl_M           78 VFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQ  136 (435)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCC
T ss_pred             HHHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999988776643

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=100.00  E-value=3.6e-35  Score=241.38  Aligned_cols=135  Identities=13%  Similarity=0.203  Sum_probs=121.8

Q ss_pred             CeEEEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHHHhcC-C-CCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHH
Q 032349            1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNR-D-PKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNEL   78 (142)
Q Consensus         1 MI~~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel   78 (142)
                      ||+|++|+|++|+++++|||++...   +...+.|++.+.++ + .++||++.+++++++|+++++|||+++++.++||+
T Consensus         2 MI~~i~I~~~~Gk~~l~k~y~~~~~---~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l   78 (423)
T 1w63_M            2 SASAVYVLDLKGKVLICRNYRGDVD---MSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVS   78 (423)
T ss_dssp             CCCEEEEEETTTEECSCBCCSCSCT---TTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTH
T ss_pred             ceEEEEEECCCCCEEEEEecCCCCC---hHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHH
Confidence            8999999999999999999997543   23456677666543 2 35699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHhHHHHHHHHHHHHhCcEEeecCHHHHHHHHHhh
Q 032349           79 AYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKRAIIERMGEL  138 (142)
Q Consensus        79 ~~le~l~~~v~~l~~~f~~v~e~~i~~nf~~v~~lLDE~id~G~~~etd~~~i~~~i~~~  138 (142)
                      +++||||+++++|++|||++||++|++||+++|++||||+|+|+|++||++.|++++.+.
T Consensus        79 ~~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~  138 (423)
T 1w63_M           79 LVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQE  138 (423)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSC
T ss_pred             HHHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCC
Confidence            999999999999999999999999999999999999999999999999999999887754

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=96.85  E-value=0.028  Score=40.98  Aligned_cols=96  Identities=10%  Similarity=0.086  Sum_probs=63.4

Q ss_pred             CeEEEEeecCCCCeeEEecCCCCCh-----hhHHHHHHHHHHHHhcCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCc
Q 032349            1 MIRFILLQNRQGKTRLAKYYVPLED-----SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITD   75 (142)
Q Consensus         1 MI~~i~iln~~G~~~l~k~Y~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~   75 (142)
                      ||...+|.-....++|+.+++....     .+-+...+.+.+++...++..+ -+..+++.+-|..-+++.++++++.+.
T Consensus         2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~-s~~~~~y~fhy~~~~gl~~l~i~d~~y   80 (196)
T 2nut_C            2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRC-TLEAGAMTFHYIIEQGVCYLVLCEAAF   80 (196)
T ss_dssp             CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEE-EEEETTEEEEEEEETTEEEEEEEETTS
T ss_pred             ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeE-EEEeCCEEEEEEeCCCeEEEEEEcCCc
Confidence            6666666554435667777763221     1122333333434322122222 356789999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHhcc
Q 032349           76 NELAYLECIHLFVEILDHFFSN   97 (142)
Q Consensus        76 Nel~~le~l~~~v~~l~~~f~~   97 (142)
                      +.-..+.||..+.+-+..-++.
T Consensus        81 p~r~af~fL~~i~~~F~~~~~~  102 (196)
T 2nut_C           81 PKKLAFAYLEDLHSEFDEQHGK  102 (196)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHHHhccc
Confidence            9999999999998888876553

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=95.51  E-value=0.1  Score=37.85  Aligned_cols=81  Identities=12%  Similarity=0.028  Sum_probs=57.4

Q ss_pred             CCCeeEEecCCCCChhhHHHHHHHHHHHHhcCCCC--CCceEEeCCeEEEEEEeCCEEEEEEecCCcCHHHHHHHHHHHH
Q 032349           11 QGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPK--FTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFV   88 (142)
Q Consensus        11 ~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~~le~l~~~v   88 (142)
                      +|.++|+.|=.. +.. -.    .+.+.+..+-+.  .--.+.+|++.+-|...+++.++++++.+.+.-..+.||..+.
T Consensus        11 rg~~iLae~t~~-~gn-f~----~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~   84 (189)
T 4b93_A           11 RGTTILAKHAWC-GGN-FL----EVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVK   84 (189)
T ss_dssp             ETTEEEEEEESS-EEC-HH----HHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHH
T ss_pred             eCCEEEEeCCCC-CCC-HH----HHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHH
Confidence            589999987332 111 11    233333322111  1124678999999999999999999999999999999999998


Q ss_pred             HHHHHHhcc
Q 032349           89 EILDHFFSN   97 (142)
Q Consensus        89 ~~l~~~f~~   97 (142)
                      +-+..-++.
T Consensus        85 ~eF~~~~~~   93 (189)
T 4b93_A           85 KRFQTTYGS   93 (189)
T ss_dssp             HHHHHHHGG
T ss_pred             HHHHhhccc
Confidence            888876664

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A

Probab=95.43  E-value=0.39  Score=33.21  Aligned_cols=95  Identities=13%  Similarity=-0.037  Sum_probs=63.2

Q ss_pred             eEEEEeecCCC--CeeEEecCCC--CChhhH---HHHHHHHHHHHhcCCC--CCCceEEeCCeEEEEE-EeCCEEEEEEe
Q 032349            2 IRFILLQNRQG--KTRLAKYYVP--LEDSEK---HKVEYEVHRLVVNRDP--KFTNFVEFRTHKVIYR-RYAGLFFSLCV   71 (142)
Q Consensus         2 I~~i~iln~~G--~~~l~k~Y~~--~~~~~~---~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~vy~-~~~~l~~~~~~   71 (142)
                      |.++.|+-..+  .++|+..++-  .+.-+|   +.+...+.+.+..|.+  ..+ -+..+++.+-|. +.+++.+++++
T Consensus         7 l~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~-sv~~~~y~fH~~~~~~gl~~l~i~   85 (144)
T 3bw6_A            7 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQ-SIEEGNYIGHVYARSEGICGVLIT   85 (144)
T ss_dssp             EEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEE-EEEETTEEEEEEECTTSEEEEEEE
T ss_pred             EEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceE-EEEeCCEEEEEEEecCCEEEEEEE
Confidence            45665554432  5678887762  221122   3333444445544332  223 356788888887 78999999999


Q ss_pred             cCCcCHHHHHHHHHHHHHHHHHHhcc
Q 032349           72 DITDNELAYLECIHLFVEILDHFFSN   97 (142)
Q Consensus        72 ~~~~Nel~~le~l~~~v~~l~~~f~~   97 (142)
                      |.+.+.-+.+.+|+.+.+-+..-++.
T Consensus        86 D~~yp~rvAF~~L~~i~~eF~~~y~~  111 (144)
T 3bw6_A           86 DKEYPVRPAYTLLNKILDEYLVAHPK  111 (144)
T ss_dssp             ETTSCHHHHHHHHHHHHHHHHHHSCG
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHccc
Confidence            99999999999999888888876653

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A

Probab=94.79  E-value=0.27  Score=35.19  Aligned_cols=83  Identities=10%  Similarity=-0.028  Sum_probs=58.6

Q ss_pred             CCCeeEEecCCCCChhhHHHHHHHHHHHHhcCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCcCHHHHHHHHHHHHHH
Q 032349           11 QGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEI   90 (142)
Q Consensus        11 ~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~~le~l~~~v~~   90 (142)
                      +|.++|+.|=....  .-+...+.+.+++..++ .. .-+..+++.+-|..-+++.++++++.+..--..+.||..+.+-
T Consensus        53 RG~~VLae~t~~~g--nf~~iak~ll~kl~~~~-~r-~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~~e  128 (169)
T 2vx8_A           53 RGTTILAKHAWCGG--NFLEVTEQILAKIPSEN-NK-LTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKR  128 (169)
T ss_dssp             ETTEEEEEEESSCB--SHHHHHHHHHTTSCSSC-EE-EEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeccCCC--CHHHHHHHHHhhCCCCC-Cc-eEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHHHH
Confidence            47788887643211  12333334433332211 11 2466799999999999999999999999999999999999999


Q ss_pred             HHHHhcc
Q 032349           91 LDHFFSN   97 (142)
Q Consensus        91 l~~~f~~   97 (142)
                      +..-++.
T Consensus       129 F~~~y~~  135 (169)
T 2vx8_A          129 FQTTYGS  135 (169)
T ss_dssp             HHHHHTT
T ss_pred             HHHHhhh
Confidence            9887765

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}

Probab=94.16  E-value=1.1  Score=32.13  Aligned_cols=81  Identities=12%  Similarity=0.028  Sum_probs=59.3

Q ss_pred             CCCeeEEecCCCCChhhHHHHHHHHHHHHhcCCCCC--CceEEeCCeEEEEEEeCCEEEEEEecCCcCHHHHHHHHHHHH
Q 032349           11 QGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKF--TNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFV   88 (142)
Q Consensus        11 ~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~~le~l~~~v   88 (142)
                      +|.++|+.|=....     .+ ..+.+.+..+.+..  --.+..+++.+-|..-+++.++++++.+..--..+.||..+.
T Consensus        63 rg~tiLAE~t~~~g-----nf-~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI~  136 (173)
T 4afi_A           63 RGTTILAKHAWCGG-----NF-LEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVK  136 (173)
T ss_dssp             ETTEEEEEEESSCC-----CH-HHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEccCCCC-----CH-HHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHHH
Confidence            58899998744321     11 13444444433221  124578999999999999999999999999999999999999


Q ss_pred             HHHHHHhcc
Q 032349           89 EILDHFFSN   97 (142)
Q Consensus        89 ~~l~~~f~~   97 (142)
                      +-+..-+|.
T Consensus       137 ~eF~~~yg~  145 (173)
T 4afi_A          137 KRFQTTYGS  145 (173)
T ss_dssp             HHHHHHHGG
T ss_pred             HHHHHHhch
Confidence            998887764

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=94.08  E-value=0.89  Score=31.49  Aligned_cols=92  Identities=13%  Similarity=0.076  Sum_probs=55.6

Q ss_pred             CeEEEEeecCCCCeeEEecCCCC-----C-hhhHHHHHHHHHH------HHhcCCCCC-CceEEeCCeEEE-EEEeCCEE
Q 032349            1 MIRFILLQNRQGKTRLAKYYVPL-----E-DSEKHKVEYEVHR------LVVNRDPKF-TNFVEFRTHKVI-YRRYAGLF   66 (142)
Q Consensus         1 MI~~i~iln~~G~~~l~k~Y~~~-----~-~~~~~~~~~~~~~------~~~~~~~~~-~~i~~~~~~~~v-y~~~~~l~   66 (142)
                      |+.++.|+|+.|..++.+-|.+.     + .++.+-+..-++.      ++...++.. -..+..+++++- |.--.++-
T Consensus         2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiK   81 (145)
T 2j3t_C            2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIK   81 (145)
T ss_dssp             CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCE
T ss_pred             eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCE
Confidence            58899999999999999999642     1 2222222222222      222111111 123345666444 55566899


Q ss_pred             EEEEecCCcCHHHHHHHHHHHH-HHHHHH
Q 032349           67 FSLCVDITDNELAYLECIHLFV-EILDHF   94 (142)
Q Consensus        67 ~~~~~~~~~Nel~~le~l~~~v-~~l~~~   94 (142)
                      |+++++..++.  +-++++.+. +..-+|
T Consensus        82 Fvl~td~~~~~--i~~~l~~iy~~lYv~~  108 (145)
T 2j3t_C           82 VVMNTDLGVGP--IRDVLHHIYSALYVEF  108 (145)
T ss_dssp             EEEEECTTCCC--CHHHHHHHHHTTHHHH
T ss_pred             EEEEecCCcch--HHHHHHHHHHHHHHHH
Confidence            99999987665  457777777 555553

>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A

Probab=92.11  E-value=2.1  Score=29.77  Aligned_cols=92  Identities=9%  Similarity=0.031  Sum_probs=64.1

Q ss_pred             eEEEEeecCCCCeeEEecCCCCCh-hhHHHHHHHHHHHHh-----cCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCc
Q 032349            2 IRFILLQNRQGKTRLAKYYVPLED-SEKHKVEYEVHRLVV-----NRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITD   75 (142)
Q Consensus         2 I~~i~iln~~G~~~l~k~Y~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~   75 (142)
                      +.+|++-|++|=+++.-..+..++ .-+..+...|....-     .-.....-+..++++.+|+.....+++.++++++.
T Consensus        38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~~a  117 (143)
T 3cpt_A           38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSSA  117 (143)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETTS
T ss_pred             eEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEecCCC
Confidence            689999999999998887765333 233455555432211     11122234556788999998999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q 032349           76 NELAYLECIHLFVEILDH   93 (142)
Q Consensus        76 Nel~~le~l~~~v~~l~~   93 (142)
                      |--.++++=+.+...++.
T Consensus       118 NtG~Il~Le~~L~p~l~~  135 (143)
T 3cpt_A          118 NTGLIVSLEKELAPLFEE  135 (143)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             CchhHhhhHHHHHHHHHH
Confidence            999998875555555543

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=90.14  E-value=4.1  Score=29.59  Aligned_cols=94  Identities=13%  Similarity=0.031  Sum_probs=61.4

Q ss_pred             eEEEEeecCCCC--eeEEecCCC--CChhhHHHHHHHH----HHHHhcCCCCC-CceEEeCCeEEE-EEEeCCEEEEEEe
Q 032349            2 IRFILLQNRQGK--TRLAKYYVP--LEDSEKHKVEYEV----HRLVVNRDPKF-TNFVEFRTHKVI-YRRYAGLFFSLCV   71 (142)
Q Consensus         2 I~~i~iln~~G~--~~l~k~Y~~--~~~~~~~~~~~~~----~~~~~~~~~~~-~~i~~~~~~~~v-y~~~~~l~~~~~~   71 (142)
                      |-++.++-..|+  ++++..|+-  .+-= +|.-.+++    .+.+..+.+.. ---+..+++.+- |...+++.+++++
T Consensus         4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f-~r~sv~ef~~f~~r~il~r~~~~~r~s~~~~~y~fH~y~~~~gl~yl~it   82 (199)
T 3kyq_A            4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFF-QRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGVVIA   82 (199)
T ss_dssp             EEEEEEEEECSSCEEEEEEEECCTTSCTT-THHHHHHHHHHHHHHHHHTSCTTEEEEEECSSEEEEEEECTTSEEEEEEE
T ss_pred             EEEEEEEEcCCCCceEEeeecccccccce-ehHhHHHHHHHHHHHHHhcCCCCCeEEEEeCCEEEEEEEecCCEEEEEEE
Confidence            456777765443  345666652  1111 12333333    23344444321 123567888777 8999999999999


Q ss_pred             cCCcCHHHHHHHHHHHHHHHHHHhc
Q 032349           72 DITDNELAYLECIHLFVEILDHFFS   96 (142)
Q Consensus        72 ~~~~Nel~~le~l~~~v~~l~~~f~   96 (142)
                      +.+.+.-..+.||..+.+-+..-++
T Consensus        83 d~~yp~r~AF~fL~ei~~eF~~~~~  107 (199)
T 3kyq_A           83 DSEYPSRVAFTLLEKVLDEFSKQVD  107 (199)
T ss_dssp             ETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999888887776

>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1

Probab=88.03  E-value=3.5  Score=29.86  Aligned_cols=92  Identities=14%  Similarity=0.130  Sum_probs=56.9

Q ss_pred             CeEEEEeecCCCCeeEEecCCCCChhhHHHHHHHHHHHHh-c-CCCCCCceEEeCCeEEEEEEeC--CEEEEEEecCCcC
Q 032349            1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVV-N-RDPKFTNFVEFRTHKVIYRRYA--GLFFSLCVDITDN   76 (142)
Q Consensus         1 MI~~i~iln~~G~~~l~k~Y~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~~~~~~~~vy~~~~--~l~~~~~~~~~~N   76 (142)
                      |+-.+.|+++.|=++-+  |.+.... .....+.+.+.+. . |..  .+.+.++++.+=|+.-+  +|.|+|+-..--+
T Consensus        10 ~~D~~~IfTkGGvVLWs--~~~~~~~-~~~~IN~LIr~VlLEER~~--~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~   84 (185)
T 2fh5_A           10 MVDFFTIFSKGGLVLWC--FQGVSDS-CTGPVNALIRSVLLQERGG--NNSFTHEALTLKYKLDNQFELVFVVGFQKILT   84 (185)
T ss_dssp             SCSEEEEEETTSBEEEE--EBTTTBS-CCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGG
T ss_pred             ceeEEEEEeCCeEEEEe--ecCCccc-ccchHHHHHHHhhhccccC--CCceeEcCeEEEEEEeccCCEEEEEEEccccc
Confidence            67788999999988766  3322111 1234556655543 2 332  34577899999999988  6778888877666


Q ss_pred             HHHHHHHHHHHHHHHHHHhcc
Q 032349           77 ELAYLECIHLFVEILDHFFSN   97 (142)
Q Consensus        77 el~~le~l~~~v~~l~~~f~~   97 (142)
                      -..+-++|..+...+...|++
T Consensus        85 L~YiD~LL~~v~~~Fv~~Y~~  105 (185)
T 2fh5_A           85 LTYVDKLIDDVHRLFRDKYRT  105 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHH
T ss_pred             chHHHHHHHHHHHHHHHHHHH
Confidence            666667777766666666643

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=85.36  E-value=2.9  Score=29.38  Aligned_cols=92  Identities=14%  Similarity=0.189  Sum_probs=51.0

Q ss_pred             CeEEEEeecCCCCeeEEecCCCC-----------ChhhHHH-HHHHHHHH---HhcCC--CCCCceE--EeCCeEEE-EE
Q 032349            1 MIRFILLQNRQGKTRLAKYYVPL-----------EDSEKHK-VEYEVHRL---VVNRD--PKFTNFV--EFRTHKVI-YR   60 (142)
Q Consensus         1 MI~~i~iln~~G~~~l~k~Y~~~-----------~~~~~~~-~~~~~~~~---~~~~~--~~~~~i~--~~~~~~~v-y~   60 (142)
                      ||.++.|+|+.|..++.|-|.+.           ..++... +..-++..   +.+-+  .....+.  .-+.+++- |.
T Consensus         2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~e   81 (159)
T 3cue_C            2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYC   81 (159)
T ss_dssp             CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEEC
T ss_pred             eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEEE
Confidence            48899999999999999988531           1111122 22222221   11111  1112333  23455444 44


Q ss_pred             EeCCEEEEEEecCCcCHHHHHHHHHHHHH-HHHHH
Q 032349           61 RYAGLFFSLCVDITDNELAYLECIHLFVE-ILDHF   94 (142)
Q Consensus        61 ~~~~l~~~~~~~~~~Nel~~le~l~~~v~-~l~~~   94 (142)
                      --.++-|++++|..++++  -++|+.+.+ +.-+|
T Consensus        82 T~TgiKFvl~td~~~~~i--~~~l~~iy~~lYv~y  114 (159)
T 3cue_C           82 TASGLWFVLLSDFKQQSY--TQVLQYIYSHIYVKY  114 (159)
T ss_dssp             CSSCCEEEEECCSSSSCT--HHHHHHHHHHHHHHH
T ss_pred             eCCCCEEEEEeCCCcchH--HHHHHHHHHHHHHHH
Confidence            455899999999876654  466666665 55553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	142
d2vgls_	142	d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem	4e-46
d2vglm2	141	d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass	1e-30

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	142
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	100.0
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	100.0
d1ifqa_	127	Sec22b {Mouse (Mus musculus) [TaxId: 10090]}	94.62
d2fh5a1	129	Signal recognition particle receptor alpha subunit	93.72
d3cpta1	116	MEK binding partner 1, MP1 {Human (Homo sapiens) [	93.42
d1ioua_	140	Synaptobrevin homolog 1 ykt6 {Baker's yeast (Sacch	88.5

>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Sec22b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.62  E-value=0.15  Score=33.11  Aligned_cols=48  Identities=8%  Similarity=0.051  Sum_probs=43.1

Q ss_pred             EEeCCeEEEEEEeCCEEEEEEecCCcCHHHHHHHHHHHHHHHHHHhcc
Q 032349           50 VEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSN   97 (142)
Q Consensus        50 ~~~~~~~~vy~~~~~l~~~~~~~~~~Nel~~le~l~~~v~~l~~~f~~   97 (142)
                      +..+++.+-|..-+++.++++++.+.+.-+.+.||..+.+-+..-++.
T Consensus        54 ~~~~~y~fHy~~~~gi~yl~i~d~~~~~~laF~fLeei~~eF~~~y~~  101 (127)
T d1ifqa_          54 LEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGK  101 (127)
T ss_dssp             EEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEECCEEEEEEecCCeEEEEEEccccCchhHHHHHHHHHHHHHHhhhh
Confidence            567999999999999999999999999999999999888888876664

>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: SRP alpha N-terminal domain-like
domain: Signal recognition particle receptor alpha subunit, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.72  E-value=0.37  Score=31.36  Aligned_cols=91  Identities=12%  Similarity=0.064  Sum_probs=57.4

Q ss_pred             CeEEEEeecCCCCeeEE-ecCCCCChhhHHHHHHHHHHHHh--cCCCCCCceEEeCCeEEEEEEeC--CEEEEEEecCCc
Q 032349            1 MIRFILLQNRQGKTRLA-KYYVPLEDSEKHKVEYEVHRLVV--NRDPKFTNFVEFRTHKVIYRRYA--GLFFSLCVDITD   75 (142)
Q Consensus         1 MI~~i~iln~~G~~~l~-k~Y~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~vy~~~~--~l~~~~~~~~~~   75 (142)
                      ||-.+-|+++.|=++-+ +-+.+..    ....+.+.+.+.  .|..  .+-..++++++-|+..+  ++.|+++-..=-
T Consensus         1 MiD~f~IftkGGiVLW~~~~~~~~~----~~~IN~LI~~vlLEER~~--~~~~~~d~y~lkw~~~Ne~~lvfV~vYQ~il   74 (129)
T d2fh5a1           1 MVDFFTIFSKGGLVLWCFQGVSDSC----TGPVNALIRSVLLQERGG--NNSFTHEALTLKYKLDNQFELVFVVGFQKIL   74 (129)
T ss_dssp             SCSEEEEEETTSBEEEEEBTTTBSC----CCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGG
T ss_pred             CccEEEEEeCCeEEEEeecCCCccc----chhHHHHHHHhheecccC--CCceeECCEEEEEEEeccCCEEEEEEEhhhh
Confidence            89999999999988876 3333222    234455555543  2332  23367799999999988  667888877666


Q ss_pred             CHHHHHHHHHHHHHHHHHHhcc
Q 032349           76 NELAYLECIHLFVEILDHFFSN   97 (142)
Q Consensus        76 Nel~~le~l~~~v~~l~~~f~~   97 (142)
                      +-..+-.+|..+...+.+.|++
T Consensus        75 ~l~yvd~lL~~i~~~F~~~y~~   96 (129)
T d2fh5a1          75 TLTYVDKLIDDVHRLFRDKYRT   96 (129)
T ss_dssp             GHHHHHHHHHHHHHHHHHHTHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666665543

>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: MEK binding partner 1, MP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.42  E-value=0.54  Score=30.04  Aligned_cols=92  Identities=9%  Similarity=0.038  Sum_probs=65.6

Q ss_pred             eEEEEeecCCCCeeEEecCCCCCh-hhHHHHHHHHHHHH---h--cCCCCCCceEEeCCeEEEEEEeCCEEEEEEecCCc
Q 032349            2 IRFILLQNRQGKTRLAKYYVPLED-SEKHKVEYEVHRLV---V--NRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITD   75 (142)
Q Consensus         2 I~~i~iln~~G~~~l~k~Y~~~~~-~~~~~~~~~~~~~~---~--~~~~~~~~i~~~~~~~~vy~~~~~l~~~~~~~~~~   75 (142)
                      ++++++-|++|=++++=.-...+. ..+..+...|-...   .  .-.....-+..++++.+|+-.+..+++.++++.+.
T Consensus        17 l~~I~iTDrDGVpv~~v~~~~~p~~~~~~~~lstf~~a~dq~sKLglg~~ksii~~Y~~~qvv~~~~~pl~vt~ia~~~a   96 (116)
T d3cpta1          17 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSSA   96 (116)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETTS
T ss_pred             eEEEEEEcCCCcEEEEecCCCChhhhcchHHHHHHHHHHHhhcccCCCCCcEEEEEecCeEEEEEecCceEEEEEecCCC
Confidence            689999999999887765544332 22344555542211   1  11122345678899999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHH
Q 032349           76 NELAYLECIHLFVEILDH   93 (142)
Q Consensus        76 Nel~~le~l~~~v~~l~~   93 (142)
                      |--+++.+-+.+...|..
T Consensus        97 NtG~Il~l~~~l~~~L~~  114 (116)
T d3cpta1          97 NTGLIVSLEKELAPLFEE  114 (116)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhh
Confidence            999999988877776653

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.50  E-value=1.2  Score=28.97  Aligned_cols=94  Identities=13%  Similarity=-0.028  Sum_probs=58.1

Q ss_pred             eEEEEeec--CCCCeeEEecCC--CCChhhHHHHHHHH----HHHHhcCCCCC-CceEEeCCeEEE-EEEeCCEEEEEEe
Q 032349            2 IRFILLQN--RQGKTRLAKYYV--PLEDSEKHKVEYEV----HRLVVNRDPKF-TNFVEFRTHKVI-YRRYAGLFFSLCV   71 (142)
Q Consensus         2 I~~i~iln--~~G~~~l~k~Y~--~~~~~~~~~~~~~~----~~~~~~~~~~~-~~i~~~~~~~~v-y~~~~~l~~~~~~   71 (142)
                      |-++.++.  .+..+.|+..|+  +.+-=+ |.-.+++    .+.+..|.+.. -.-+..+++.+- |.+.+++.+++++
T Consensus         3 l~~~~v~~~~~~~~~~L~~a~Dlssf~ffq-R~svkE~~~f~sr~i~~Rt~~g~r~sv~~~~y~~h~yv~~~gl~~l~i~   81 (140)
T d1ioua_           3 IYYIGVFRSGGEKALELSEVKDLSQFGFFE-RSSVGQFMTFFAETVASRTGAGERQSIEEGNYIGHVYARSEGICGVLIT   81 (140)
T ss_dssp             CCEEEEEEEETTEEEEEEEEECCSSCCTTH-HHHHHHHHHHHHHHHHHHCCSSSEEEEEETTEEEEEECCSSSCEEEEEB
T ss_pred             EEEEEEEEcCCCCcEEEeeeccccccceee-hHhHHHHHHHHHHHHhhcCCCCceEEEEcCCeEEEEEEeeCCEEEEEEE
Confidence            34556665  344556777776  222212 3333332    33344444331 123566776554 7888899999999


Q ss_pred             cCCcCHHHHHHHHHHHHHHHHHHhc
Q 032349           72 DITDNELAYLECIHLFVEILDHFFS   96 (142)
Q Consensus        72 ~~~~Nel~~le~l~~~v~~l~~~f~   96 (142)
                      +.+.+.-..+.+|+.+.+-+..-++
T Consensus        82 d~~Yp~r~AF~~L~~i~~eF~~~~~  106 (140)
T d1ioua_          82 DKQYPVRPAYTLLNKILDEYLVAHP  106 (140)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999977666655443