Citrus Sinensis ID: 032371

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MESHMGQGYKFQPSDELSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYRRSPGSKVPVKTDWVMHEYHVKDDPSYEV
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccEEEEEEcEEEcccccccccccccccEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHccccccccEEHHHEEHcccccccccHHccccccccEEEEEcccccccccccccccccccccEEEcccccEEEccccEEEEEEEEEEEcccccccccccccEEEEEEEccccccccc
Coil and Loop (DISEMBL)
meshmgqgykfqpsdeLSVSLLKekrldphfsygpikdighicslepedlatesetesedqacyffyephykyrnsnrvhrrteagqwkitsedsqieasnrlsgtKKFLTFyrrspgskvpvktdwvmheyhvkddpsyev
Flexible Loop (DISEMBL)
meshmgqgykfqpsdELSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFFYEPhykyrnsnrvhRRTEAGqwkitsedsqieasnrlsgtkkfltfyrrspgskvpvktdwvmheyhvkddpsyev
Low Complexity Region (SEG)
MESHMGQGYKFQPSDELSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYRRSPGSKVPVKTDWVMHEYHVKDDPSYEV
Disordered region (IsUnstruct)
***************************DPHFSYGPIKDIGHICSL***************QACYFFYEPHYKYRNSNRVH**************************KKFLTFYRRSPGSKVPVKTDWVMHEYH*********
Disordered Region (DISOPRED)
**SHMGQGYKFQPSDELSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYRRSPGSKVPVKTDWVMHEY**********
Disordered Region (DISEMBL)
**********FQPSDELSVSLLKEKRLDPHFSYGPIKDIGHICSLEPE***********DQACYFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYRRSPGSKVPVKTDWVMHEYHVKDDPSYEV
Disordered Region (DISPRO)
****MGQGYKFQPSDELSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYRRSPGSKVPVKTDWVMHEYHVKDD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESHMGQGYKFQPSDELSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYRRSPGSKVPVKTDWVMHEYHVKDDPSYEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
Q84K00	567	NAC domain-containing pro	yes	no	0.922	0.231	0.357	2e-15
Q9FWX2	395	NAC domain-containing pro	no	no	0.922	0.331	0.369	7e-14
O81913	359	NAC domain-containing pro	no	no	0.859	0.339	0.393	2e-13
Q9FLJ2	336	NAC domain-containing pro	no	no	0.852	0.360	0.387	7e-13
Q9FRV4	310	Protein CUP-SHAPED COTYLE	no	no	0.936	0.429	0.377	7e-13
Q93VY3	297	NAC domain-containing pro	no	no	0.845	0.404	0.384	2e-12
Q7GCL7	489	NAC domain-containing pro	no	no	0.873	0.253	0.351	4e-12
Q9SV87	341	Protein BEARSKIN1 OS=Arab	no	no	0.880	0.366	0.378	4e-12
Q9FIW5	337	Putative NAC domain-conta	no	no	0.852	0.359	0.389	7e-12
Q9C878	305	Protein BEARSKIN1 OS=Arab	no	no	0.880	0.409	0.371	8e-12

>sp|Q84K00|NAC78_ARATH NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 76/137 (55%), Gaps = 6/137 (4%)

Query: 3   SHMGQGYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQ 61
           + +  G++F P+DE L    LK K  +  F +  I  +  I   EP DL  +S+ +S D 
Sbjct: 7   TSLAPGFRFHPTDEELVRYYLKRKVCNKPFKFDAIS-VTDIYKSEPWDLPDKSKLKSRDL 65

Query: 62  ACYFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYR-RSPGSK 120
             YFF     KY N ++ +R TE G WK T +D +I   +R+ G KK L +++ R+P  +
Sbjct: 66  EWYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDREIRNGSRVVGMKKTLVYHKGRAPRGE 125

Query: 121 VPVKTDWVMHEYHVKDD 137
              +T+WVMHEY + D+
Sbjct: 126 ---RTNWVMHEYRLSDE 139

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 73/138 (52%), Gaps = 7/138 (5%)

Query: 3   SHMGQGYKFQPSDELSVSL-LKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQ 61
           SH+  G++F P+DE  V   L++K          IKDI  +  +EP DL    +   E+Q
Sbjct: 5   SHVPPGFRFHPTDEELVDYYLRKKVASKRIEIDFIKDID-LYKIEPWDLQELCKIGHEEQ 63

Query: 62  A-CYFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYR-RSPGS 119
           +  YFF     KY    R +R T+AG WK T  D  I   + L G +K L FY+ R+P  
Sbjct: 64  SDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVFYKGRAPNG 123

Query: 120 KVPVKTDWVMHEYHVKDD 137
           +   K+DW+MHEY ++ D
Sbjct: 124 Q---KSDWIMHEYRLETD 138

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

>sp|O81913|NAC4_ARATH NAC domain-containing protein 4 OS=Arabidopsis thaliana GN=NAC004 PE=2 SV=2

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 69/132 (52%), Gaps = 10/132 (7%)

Query: 8   GYKFQPSDELSVS-LLKEKRLDPHFSY-GPIKDIGHICSLEPEDLATESETESEDQACYF 65
           G++F+P+DE  V   L+ K LD   S+   +     ICS EP DL ++S  +S D   YF
Sbjct: 6   GFRFRPNDEEIVDHYLRPKNLDSDTSHVDEVISTVDICSFEPWDLPSKSMIKSRDGVWYF 65

Query: 66  FYEPHYKYRNSNRVHRRTEAGQWKITSEDSQI--EASNRLS-GTKKFLTFYRRSPGSKVP 122
           F     KY   ++  RRT +G WK T +   +  +  NR   G K+ L F  R  GS   
Sbjct: 66  FSVKEMKYNRGDQQRRRTNSGFWKKTGKTMTVMRKRGNREKIGEKRVLVFKNRD-GS--- 121

Query: 123 VKTDWVMHEYHV 134
            KTDWVMHEYH 
Sbjct: 122 -KTDWVMHEYHA 132

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 69/129 (53%), Gaps = 8/129 (6%)

Query: 8   GYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFF 66
           G++F P+DE L    L +K LD  FS   I ++  +   EP +L   ++    ++  YFF
Sbjct: 19  GFRFHPTDEELITHYLHKKVLDTSFSAKAIGEV-DLNKSEPWELPWMAKMG--EKEWYFF 75

Query: 67  YEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYR-RSPGSKVPVKT 125
                KY    R +R TEAG WK T +D +I     L G KK L FYR R+P  +   KT
Sbjct: 76  CVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKGQ---KT 132

Query: 126 DWVMHEYHV 134
           +WVMHEY +
Sbjct: 133 NWVMHEYRL 141

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRV4|NAC54_ARATH Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana GN=NAC054 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/143 (37%), Positives = 77/143 (53%), Gaps = 10/143 (6%)

Query: 2   ESHMGQGYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESED 60
           ES M  G++F P+DE L    L +K LD +FS   I  +  +   EP +L  +++   ++
Sbjct: 17  ESLMPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQV-DLNKSEPWELPEKAKMGEKE 75

Query: 61  QACYFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEAS--NRLSGTKKFLTFYR-RSP 117
              YFF     KY    R +R TEAG WK T +D +I++S    L G KK L FY+ R+P
Sbjct: 76  W--YFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVFYKGRAP 133

Query: 118 GSKVPVKTDWVMHEYHVKDDPSY 140
             +   K+ WVMHEY +    SY
Sbjct: 134 KGE---KSCWVMHEYRLDGKFSY 153

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93VY3|NAC72_ARATH NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 64/130 (49%), Gaps = 10/130 (7%)

Query: 8   GYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFF 66
           G++F P+DE L V  L  K    HFS   I DI  +   +P DL   S+    ++  YFF
Sbjct: 17  GFRFYPTDEELLVQYLCRKVAGYHFSLQVIGDI-DLYKFDPWDLP--SKALFGEKEWYFF 73

Query: 67  YEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYRRSPGSKVP--VK 124
                KY N +R +R   +G WK T  D  I A  R  G KK L FY      K P   K
Sbjct: 74  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIITADGRRVGIKKALVFY----AGKAPKGTK 129

Query: 125 TDWVMHEYHV 134
           T+W+MHEY +
Sbjct: 130 TNWIMHEYRL 139

Transcription factors that bind specifically to the 5'-CATGTG-3' motif.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7GCL7|NAC74_ORYSJ NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 4/128 (3%)

Query: 8   GYKFQPSD-ELSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFF 66
           G+ F P D EL    LK+K       Y  I ++  I   EP DL  + +  ++D   +FF
Sbjct: 12  GFGFHPKDTELISHYLKKKIHGQKIEYEIIPEV-DIYKHEPWDLPAKCDVPTQDNKWHFF 70

Query: 67  YEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYRRSPGSKVPVKTD 126
                KY N +R +R T AG WK T +D  I+   +  GTKK L F+   P +    +T+
Sbjct: 71  AARDRKYPNGSRSNRATVAGYWKSTGKDRAIKMGKQTIGTKKTLVFHEGRPPTG--RRTE 128

Query: 127 WVMHEYHV 134
           W+MHEY++
Sbjct: 129 WIMHEYYI 136

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SV87|BRN2_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/132 (37%), Positives = 69/132 (52%), Gaps = 7/132 (5%)

Query: 8   GYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQA-CYF 65
           G++F P+DE L    LK+K     F    I+++  +  LEP DL    +  S  Q   YF
Sbjct: 12  GFRFHPTDEELLHYYLKKKISYQKFEMEVIREV-DLNKLEPWDLQERCKIGSTPQNEWYF 70

Query: 66  FYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYR-RSPGSKVPVK 124
           F     KY   +R +R T AG WK T  D  I  S +  G +K L FY+ R+P  +   K
Sbjct: 71  FSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQ---K 127

Query: 125 TDWVMHEYHVKD 136
           TDW+MHEY ++D
Sbjct: 128 TDWIMHEYRLED 139

Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIW5|NAC94_ARATH Putative NAC domain-containing protein 94 OS=Arabidopsis thaliana GN=ANAC094 PE=4 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 67/131 (51%), Gaps = 10/131 (7%)

Query: 8   GYKFQPSDELSVSL-LKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFF 66
           G++F P+DE  VS  LK K L     +  IK +  I   +P DL   +    ++   ++F
Sbjct: 23  GFRFHPTDEELVSFYLKRKVLHKSLPFDLIKKV-DIYKYDPWDLPKLAAMGEKE---WYF 78

Query: 67  YEPH-YKYRNSNRVHRRTEAGQWKITSEDSQIEA--SNRLSGTKKFLTFYRRSPGSKVPV 123
           Y P   KYRNS R +R T  G WK T  D  I +  S R  G KK L FYR        V
Sbjct: 79  YCPRDRKYRNSTRPNRVTGGGFWKATGTDRPIYSLDSTRCIGLKKSLVFYRGRAAKG--V 136

Query: 124 KTDWVMHEYHV 134
           KTDW+MHE+ +
Sbjct: 137 KTDWMMHEFRL 147

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C878|BRN1_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN1 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/132 (37%), Positives = 69/132 (52%), Gaps = 7/132 (5%)

Query: 8   GYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQA-CYF 65
           G++F P+DE L    LK+K     F    IK++  +  +EP DL    +  S  Q   YF
Sbjct: 11  GFRFHPTDEELLHYYLKKKISYEKFEMEVIKEV-DLNKIEPWDLQDRCKIGSTPQNEWYF 69

Query: 66  FYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYR-RSPGSKVPVK 124
           F     KY   +R +R T +G WK T  D  I  S +  G +K L FY+ R+P  +   K
Sbjct: 70  FSHKDRKYPTGSRTNRATHSGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQ---K 126

Query: 125 TDWVMHEYHVKD 136
           TDW+MHEY ++D
Sbjct: 127 TDWIMHEYRIED 138

Transcription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
224130712	329	NAC domain protein, IPR003441 [Populus t	0.901	0.389	0.375	7e-16
296089037	335	unnamed protein product [Vitis vinifera]	0.852	0.361	0.421	1e-15
225453680	560	PREDICTED: uncharacterized protein LOC10	0.852	0.216	0.421	1e-15
147802300	433	hypothetical protein VITISV_021987 [Viti	0.922	0.302	0.372	5e-15
449485756	196	PREDICTED: NAC transcription factor ONAC	0.894	0.647	0.386	7e-15
224109864	440	NAC domain protein, IPR003441 [Populus t	0.922	0.297	0.379	7e-15
296085949	385	unnamed protein product [Vitis vinifera]	0.922	0.340	0.372	7e-15
449435712	196	PREDICTED: NAC transcription factor ONAC	0.894	0.647	0.386	8e-15
225448908	432	PREDICTED: uncharacterized protein LOC10	0.922	0.303	0.372	8e-15
255540115	237	transcription factor, putative [Ricinus	0.830	0.497	0.409	9e-15

>gi|224130712|ref|XP_002320909.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222861682|gb|EEE99224.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score = 89.0 bits (219), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 75/133 (56%), Gaps = 5/133 (3%)

Query: 8   GYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFF 66
           GY+F P++E L  + LK K L        I  + H+C  EP +L  +S  +S+D   YFF
Sbjct: 15  GYRFHPTNEELVCNYLKPKILGDEVEDLSIMPVVHVCKHEPSELPDKSNIKSKDAVWYFF 74

Query: 67  YEPHYKYRNSNRVHRRTEAGQWKITSEDSQIE--ASNRLSGTKKFLTFYRRSPGSKVPVK 124
               +KY NS R +RRT+ G WK T ++ +I    + ++ GT+K L FY +S  S  P++
Sbjct: 75  CPRDFKYLNSGRYNRRTKLGFWKPTGKNLKIRFMGTKKVIGTRKTLVFYTKS--SPKPIR 132

Query: 125 TDWVMHEYHVKDD 137
           T W++HEY    D
Sbjct: 133 TGWIIHEYEYISD 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089037|emb|CBI38740.3| unnamed protein product [Vitis vinifera]

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 72/133 (54%), Gaps = 12/133 (9%)

Query: 8   GYKFQPSDELSVS---LLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACY 64
           G++F P+DE  V     LK   ++ H    P  D+   C  EP DL   S  ++ D   +
Sbjct: 9   GFRFHPTDEELVDHYLKLKILGMNSHVDIIPEVDV---CKWEPWDLPVLSVIQTNDPEWF 65

Query: 65  FFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIE--ASNRLSGTKKFLTFYR-RSPGSKV 121
           FF  P YKY    R +R TEAG WK T +D  I+  A+  L GTKK L FYR R+P S  
Sbjct: 66  FFCPPDYKYPTGRRSNRATEAGYWKPTGKDRNIKSRATKELLGTKKTLVFYRGRAPQS-- 123

Query: 122 PVKTDWVMHEYHV 134
            V+T+WVMHEY  
Sbjct: 124 -VRTNWVMHEYRA 135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453680|ref|XP_002268892.1| PREDICTED: uncharacterized protein LOC100252386 [Vitis vinifera]

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 72/133 (54%), Gaps = 12/133 (9%)

Query: 8   GYKFQPSDELSVS---LLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACY 64
           G++F P+DE  V     LK   ++ H    P  D+   C  EP DL   S  ++ D   +
Sbjct: 17  GFRFHPTDEELVDHYLKLKILGMNSHVDIIPEVDV---CKWEPWDLPVLSVIQTNDPEWF 73

Query: 65  FFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIE--ASNRLSGTKKFLTFYR-RSPGSKV 121
           FF  P YKY    R +R TEAG WK T +D  I+  A+  L GTKK L FYR R+P S  
Sbjct: 74  FFCPPDYKYPTGRRSNRATEAGYWKPTGKDRNIKSRATKELLGTKKTLVFYRGRAPQS-- 131

Query: 122 PVKTDWVMHEYHV 134
            V+T+WVMHEY  
Sbjct: 132 -VRTNWVMHEYRA 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802300|emb|CAN70405.1| hypothetical protein VITISV_021987 [Vitis vinifera]

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 73/137 (53%), Gaps = 6/137 (4%)

Query: 3   SHMGQGYKFQPSDELSVSL-LKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQ 61
           + +  G++F PSDE  V   LK K      ++  I ++  I   EP +L  ES+ +S D 
Sbjct: 11  TALAPGFRFHPSDEXLVQYYLKRKVCGKAIAFDAIAEV-DIYKKEPWNLGGESKLKSRDM 69

Query: 62  ACYFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYR-RSPGSK 120
             YFF     KY N  RV+R T  G WK T  D  +   +R+ G KK L F+  R+PG +
Sbjct: 70  EWYFFSALDRKYGNGGRVNRATSYGYWKATGNDRSVLHGSRIVGMKKTLVFHSGRAPGGQ 129

Query: 121 VPVKTDWVMHEYHVKDD 137
              +T+W+MHEY + DD
Sbjct: 130 ---RTNWIMHEYRLVDD 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485756|ref|XP_004157266.1| PREDICTED: NAC transcription factor ONAC010-like [Cucumis sativus]

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 76/137 (55%), Gaps = 10/137 (7%)

Query: 8   GYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFF 66
           G++F P+DE L    LK K +        I+ +  IC+ EP +L + S  ++ D   +FF
Sbjct: 16  GFRFHPTDEELFNHYLKNKIVGRESLVQYIRQVD-ICNFEPWELPSLSNDQTGDHQWFFF 74

Query: 67  YEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEA--SNRLSGTKKFLTFYRRSPGSKVP-- 122
               +KY N  R +R T+ G WK T +D QI A  +  L GTKK L FY      +VP  
Sbjct: 75  SAQDFKYSNGRRSNRATKTGYWKSTGKDRQIMARVTKVLIGTKKTLVFY----SGRVPNG 130

Query: 123 VKTDWVMHEYHVKDDPS 139
           +KT+WV+HEYH+  DP+
Sbjct: 131 IKTNWVIHEYHLHPDPN 147

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109864|ref|XP_002315336.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|118483306|gb|ABK93555.1| unknown [Populus trichocarpa] gi|222864376|gb|EEF01507.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 6/137 (4%)

Query: 3   SHMGQGYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQ 61
           + +  G++F P+DE L +  LK K  +  F +  I ++  I   EP DLA +S  +S DQ
Sbjct: 37  TALAPGFRFHPTDEELVIYYLKRKVSNKPFRFNAISEV-DIYKNEPWDLADKSRLKSRDQ 95

Query: 62  ACYFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYR-RSPGSK 120
             YFF     KY N  R++R T  G WK T +D +I    +L   KK L F+  R+PG  
Sbjct: 96  EWYFFSPLDKKYGNGARMNRATGKGYWKATGKDREIRRECQLLAMKKTLVFHSGRAPGG- 154

Query: 121 VPVKTDWVMHEYHVKDD 137
             ++T+WVMHEY + D+
Sbjct: 155 --LRTNWVMHEYRLIDE 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085949|emb|CBI31390.3| unnamed protein product [Vitis vinifera]

 Score = 85.5 bits (210), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 73/137 (53%), Gaps = 6/137 (4%)

Query: 3   SHMGQGYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQ 61
           + +  G++F PSDE L    LK K      ++  I ++  I   EP +L  ES+ +S D 
Sbjct: 11  TALAPGFRFHPSDEELVQYYLKRKVCGKAIAFDAIAEV-DIYKKEPWNLGGESKLKSRDM 69

Query: 62  ACYFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYR-RSPGSK 120
             YFF     KY N  RV+R T  G WK T  D  +   +R+ G KK L F+  R+PG +
Sbjct: 70  EWYFFSALDRKYGNGGRVNRATSYGYWKATGNDRSVLHGSRIVGMKKTLVFHSGRAPGGQ 129

Query: 121 VPVKTDWVMHEYHVKDD 137
              +T+W+MHEY + DD
Sbjct: 130 ---RTNWIMHEYRLVDD 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435712|ref|XP_004135638.1| PREDICTED: NAC transcription factor ONAC010-like [Cucumis sativus]

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 76/137 (55%), Gaps = 10/137 (7%)

Query: 8   GYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFF 66
           G++F P+DE L    LK K +        I+ +  IC+ EP +L + S  ++ D   +FF
Sbjct: 16  GFRFHPTDEELFNHYLKNKIVGRESLVQYIRQV-DICNFEPWELPSLSNDQTGDHQWFFF 74

Query: 67  YEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEA--SNRLSGTKKFLTFYRRSPGSKVP-- 122
               +KY N  R +R T+ G WK T +D QI A  +  L GTKK L FY      +VP  
Sbjct: 75  SAQDFKYSNGRRSNRATKTGYWKSTGKDRQIMARGTKVLIGTKKTLVFY----SGRVPNG 130

Query: 123 VKTDWVMHEYHVKDDPS 139
           +KT+WV+HEYH+  DP+
Sbjct: 131 IKTNWVIHEYHLHPDPN 147

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448908|ref|XP_002265550.1| PREDICTED: uncharacterized protein LOC100265122 [Vitis vinifera]

 Score = 85.1 bits (209), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/137 (37%), Positives = 73/137 (53%), Gaps = 6/137 (4%)

Query: 3   SHMGQGYKFQPSDELSVSL-LKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQ 61
           + +  G++F PSDE  V   LK K      ++  I ++  I   EP +L  ES+ +S D 
Sbjct: 11  TALAPGFRFHPSDEELVQYYLKRKVCGKAIAFDAIAEV-DIYKKEPWNLGGESKLKSRDM 69

Query: 62  ACYFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYR-RSPGSK 120
             YFF     KY N  RV+R T  G WK T  D  +   +R+ G KK L F+  R+PG +
Sbjct: 70  EWYFFSALDRKYGNGGRVNRATSYGYWKATGNDRSVLHGSRIVGMKKTLVFHSGRAPGGQ 129

Query: 121 VPVKTDWVMHEYHVKDD 137
              +T+W+MHEY + DD
Sbjct: 130 ---RTNWIMHEYRLVDD 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540115|ref|XP_002511122.1| transcription factor, putative [Ricinus communis] gi|223550237|gb|EEF51724.1| transcription factor, putative [Ricinus communis]

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/132 (40%), Positives = 72/132 (54%), Gaps = 14/132 (10%)

Query: 8   GYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFF 66
           G++FQP+DE L    LK K L        I DI ++C  +P DL   +E E      YFF
Sbjct: 18  GFRFQPTDEELVFQYLKRKVLSWPLPASIIPDI-NVCKFDPWDLPGNTEQER-----YFF 71

Query: 67  YEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEAS---NRLSGTKKFLTFYR-RSPGSKVP 122
                KY N NR++R T +G WK T  + QI +S   N + G KK L FYR +SP +   
Sbjct: 72  SNKESKYPNGNRINRATASGYWKATGLEKQIGSSSSGNHVVGMKKTLVFYRGKSPHA--- 128

Query: 123 VKTDWVMHEYHV 134
            +TDW+MHEY +
Sbjct: 129 TRTDWIMHEYRL 140

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2089764	246	NAC057 "NAC domain containing	0.901	0.520	0.376	5.3e-17
TAIR|locus:2184342	567	NAC2 "NAC domain containing pr	0.908	0.227	0.362	6.1e-17
TAIR|locus:2128013	534	NTL9 "NAC transcription factor	0.922	0.245	0.385	6.9e-17
TAIR|locus:2009729	631	NAC028 "NAC domain containing	0.894	0.201	0.392	7.5e-17
TAIR|locus:2167923	348	NAC101 "NAC-domain protein 101	0.936	0.382	0.366	7.8e-17
TAIR|locus:2202028	395	NAC007 "NAC 007" [Arabidopsis	0.922	0.331	0.369	1e-16
TAIR|locus:2075815	549	NAC053 "AT3G10500" [Arabidopsi	0.901	0.233	0.358	2.5e-16
TAIR|locus:2009096	557	NAC017 "NAC domain containing	0.887	0.226	0.371	4.3e-16
TAIR|locus:2060979	365	VND1 "vascular related NAC-dom	0.936	0.364	0.361	4.7e-16
TAIR|locus:2164895	285	NAC6 "NAC domain containing pr	0.901	0.449	0.376	4.7e-16

TAIR|locus:2089764 NAC057 "NAC domain containing protein 57" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 52/138 (37%), Positives = 72/138 (52%)

Query:     8 GYKFQPSDELSVSL-LKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFF 66
             G++F P+DE  V+  LK K          I ++  +   EP DLA +S   S D   YFF
Sbjct:     9 GFRFHPTDEELVNYYLKRKINGQEIELDIIPEVD-LYKCEPWDLAEKSFLPSRDPEWYFF 67

Query:    67 YEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYR-RSPGSKVPVKT 125
                  KY N  R +R T  G WK T +D ++ + +R  G KK L +Y+ R+P     ++T
Sbjct:    68 GPRDRKYPNGFRTNRATRGGYWKSTGKDRRVTSQSRAIGMKKTLVYYKGRAPQG---IRT 124

Query:   126 DWVMHEYHVKD----DPS 139
             DWVMHEY + D    DPS
Sbjct:   125 DWVMHEYRLDDKDCDDPS 142

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2184342 NAC2 "NAC domain containing protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 6.1e-17, P = 6.1e-17
 Identities = 49/135 (36%), Positives = 75/135 (55%)

Query:     5 MGQGYKFQPSDELSVSL-LKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQAC 63
             +  G++F P+DE  V   LK K  +  F +  I  +  I   EP DL  +S+ +S D   
Sbjct:     9 LAPGFRFHPTDEELVRYYLKRKVCNKPFKFDAIS-VTDIYKSEPWDLPDKSKLKSRDLEW 67

Query:    64 YFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYR-RSPGSKVP 122
             YFF     KY N ++ +R TE G WK T +D +I   +R+ G KK L +++ R+P  +  
Sbjct:    68 YFFSMLDKKYSNGSKTNRATEKGYWKTTGKDREIRNGSRVVGMKKTLVYHKGRAPRGE-- 125

Query:   123 VKTDWVMHEYHVKDD 137
              +T+WVMHEY + D+
Sbjct:   126 -RTNWVMHEYRLSDE 139

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0009644 "response to high light intensity" evidence=IEP

GO:0009962 "regulation of flavonoid biosynthetic process" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2128013 NTL9 "NAC transcription factor-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 6.9e-17, P = 6.9e-17
 Identities = 54/140 (38%), Positives = 79/140 (56%)

Query:     1 MESHMGQGYKFQPSDELSVS-LLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESE 59
             MES +  G++F+P+DE  V+  L+ K    H     I DI  +C  EP DL   S  +++
Sbjct:     6 MES-LPLGFRFRPTDEELVNHYLRLKINGRHSDVRVIPDID-VCKWEPWDLPALSVIKTD 63

Query:    60 DQACYFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYR-RSPG 118
             D   +FF     KY N +R +R T++G WK T +D  I++   L G KK L FYR R+P 
Sbjct:    64 DPEWFFFCPRDRKYPNGHRSNRATDSGYWKATGKDRSIKSKKTLIGMKKTLVFYRGRAPK 123

Query:   119 SKVPVKTDWVMHEYH--VKD 136
              +   +T+W+MHEY   +KD
Sbjct:   124 GE---RTNWIMHEYRPTLKD 140

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0031347 "regulation of defense response" evidence=IMP

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

TAIR|locus:2009729 NAC028 "NAC domain containing protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 7.5e-17, P = 7.5e-17
 Identities = 53/135 (39%), Positives = 77/135 (57%)

Query:     5 MGQGYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQAC 63
             M  G++F P+DE L +  LK K          I +I  +   EP DL  +S   S+D   
Sbjct:     6 MPPGFRFHPTDEELVIYYLKRKINGRTIELEIIPEID-LYKCEPWDLPGKSLLPSKDLEW 64

Query:    64 YFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYR-RSP-GSKV 121
             +FF     KY N +R +R T+AG WK T +D ++ + +R+ GTKK L +YR R+P GS+ 
Sbjct:    65 FFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVTSHSRMVGTKKTLVYYRGRAPHGSR- 123

Query:   122 PVKTDWVMHEYHVKD 136
                TDWVMHEY +++
Sbjct:   124 ---TDWVMHEYRLEE 135

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2167923 NAC101 "NAC-domain protein 101" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 7.8e-17, P = 7.8e-17
 Identities = 52/142 (36%), Positives = 72/142 (50%)

Query:     1 MES--HMGQGYKFQPSDELSVSL-LKEKRLDPHFSYGPIKDIGHICSLEPEDLATE-SET 56
             MES  H+  GY+F P+DE  V   LK K   P      IKD+  +  +EP D+       
Sbjct:     1 MESLAHIPPGYRFHPTDEELVDYYLKNKVAFPGMQVDVIKDVD-LYKIEPWDIQELCGRG 59

Query:    57 ESEDQACYFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYR-R 115
               E++  YFF     KY    R +R T +G WK T  D  I +   L G +K L FY+ R
Sbjct:    60 TGEEREWYFFSHKDKKYPTGTRTNRATGSGFWKATGRDKAIYSKQELVGMRKTLVFYKGR 119

Query:   116 SPGSKVPVKTDWVMHEYHVKDD 137
             +P  +   K+DW+MHEY ++ D
Sbjct:   120 APNGQ---KSDWIMHEYRLETD 138

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP;RCA

GO:0010089 "xylem development" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2202028 NAC007 "NAC 007" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 1.0e-16, P = 1.0e-16
 Identities = 51/138 (36%), Positives = 73/138 (52%)

Query:     3 SHMGQGYKFQPSDELSVSL-LKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQ 61
             SH+  G++F P+DE  V   L++K          IKDI  +  +EP DL    +   E+Q
Sbjct:     5 SHVPPGFRFHPTDEELVDYYLRKKVASKRIEIDFIKDID-LYKIEPWDLQELCKIGHEEQ 63

Query:    62 A-CYFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYR-RSPGS 119
             +  YFF     KY    R +R T+AG WK T  D  I   + L G +K L FY+ R+P  
Sbjct:    64 SDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVFYKGRAPNG 123

Query:   120 KVPVKTDWVMHEYHVKDD 137
             +   K+DW+MHEY ++ D
Sbjct:   124 Q---KSDWIMHEYRLETD 138

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2075815 NAC053 "AT3G10500" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 2.5e-16, P = 2.5e-16
 Identities = 48/134 (35%), Positives = 74/134 (55%)

Query:     5 MGQGYKFQPSDELSVSL-LKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQAC 63
             +  G++F P+DE  V   LK K  +  F +  I  +  +   EP DL  +S  +S D   
Sbjct:     9 LAPGFRFHPTDEELVRYYLKRKICNKPFKFDAIS-VTDVYKSEPWDLPDKSRLKSRDLEW 67

Query:    64 YFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYR-RSPGSKVP 122
             YFF     KYRN ++ +R TE G WK T +D +I   +++ G KK L +++ R+P  +  
Sbjct:    68 YFFSMLDKKYRNGSKTNRATEMGYWKTTGKDREILNGSKVVGMKKTLVYHKGRAPRGE-- 125

Query:   123 VKTDWVMHEYHVKD 136
              +T+WVMHEY + D
Sbjct:   126 -RTNWVMHEYRLVD 138

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009819 "drought recovery" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IMP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2009096 NAC017 "NAC domain containing protein 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 4.3e-16, P = 4.3e-16
 Identities = 49/132 (37%), Positives = 74/132 (56%)

Query:     8 GYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFF 66
             G++F P+DE L +  LK K          I  +  +  ++PE+L  +S  ++ D+  ++F
Sbjct:    19 GFRFHPTDEELVMYYLKRKICRKRLRVNVI-GVVDVYKMDPEELPGQSMLKTGDRQWFYF 77

Query:    67 YEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYR-RSPGSKVPVKT 125
                  KY N+ R +R TE G WK T +D  IE ++R  G KK L FYR R+P  +   +T
Sbjct:    78 TPRSRKYPNAARSNRGTENGYWKATGKDRVIEYNSRSVGLKKTLVFYRGRAPSGE---RT 134

Query:   126 DWVMHEYHVKDD 137
             DWVMHEY + +D
Sbjct:   135 DWVMHEYTMDED 146

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

TAIR|locus:2060979 VND1 "vascular related NAC-domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 51/141 (36%), Positives = 72/141 (51%)

Query:     1 MES-HMGQGYKFQPSDELSVSL-LKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETES 58
             MES  +  G++F P+DE  V   L++K          I+DI  +  +EP DL  +     
Sbjct:     4 MESCSVPPGFRFHPTDEELVGYYLRKKIASQKIDLDVIRDID-LYRIEPWDLQEQCRIGY 62

Query:    59 EDQ-ACYFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYR-RS 116
             E+Q   YFF     KY    R +R T AG WK T  D  +    +L G +K L FY+ R+
Sbjct:    63 EEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKTKLIGMRKTLVFYKGRA 122

Query:   117 PGSKVPVKTDWVMHEYHVKDD 137
             P  K   K+DW+MHEY ++ D
Sbjct:   123 PNGK---KSDWIMHEYRLESD 140

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

TAIR|locus:2164895 NAC6 "NAC domain containing protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 52/138 (37%), Positives = 74/138 (53%)

Query:     2 ESHMG--QGYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETES 58
             E H+    G++F P+DE L    LK K  +  FS   I ++  +  +EP DL  +++   
Sbjct:    15 EEHIDLPPGFRFHPTDEELITHYLKPKVFNTFFSATAIGEVD-LNKIEPWDLPWKAKMGE 73

Query:    59 EDQACYFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYR-RSP 117
             ++   YFF     KY    R +R TEAG WK T +D +I     L G KK L FY+ R+P
Sbjct:    74 KEW--YFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAP 131

Query:   118 GSKVPVKTDWVMHEYHVK 135
                  VKT+WVMHEY ++
Sbjct:   132 KG---VKTNWVMHEYRLE 146

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IPI

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010150 "leaf senescence" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0000303 "response to superoxide" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NAC097 NAC domain protein, IPR003441 (330 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	142
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	7e-28

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score = 99.6 bits (249), Expect = 7e-28
 Identities = 48/129 (37%), Positives = 65/129 (50%), Gaps = 7/129 (5%)

Query: 8   GYKFQPSD-ELSVSLLKEKRLD-PHFSYGPIKDIGHICSLEPEDLATESETESEDQACYF 65
           G++F P+D EL V  LK K L  P      I ++  I   EP DL  + + +  D+  YF
Sbjct: 4   GFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVD-IYKFEPWDLP-DGKAKGGDREWYF 61

Query: 66  FYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASN-RLSGTKKFLTFYRRSPGSKVPVK 124
           F     KY N +R +R T +G WK T +D  + +    + G KK L FY+         K
Sbjct: 62  FSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVFYKGRAPK--GEK 119

Query: 125 TDWVMHEYH 133
           TDWVMHEY 
Sbjct: 120 TDWVMHEYR 128

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=5e-47  Score=269.31  Aligned_cols=126  Identities=35%  Similarity=0.613  Sum_probs=95.0

Q ss_pred             CCCCceEcCCHH-HHHHHHhhhhcCCCCCC-CCeeeccCCCCCCccCccccccccCCCceEEEeecCcccccCCCccccc
Q 032371            5 MGQGYKFQPSDE-LSVSLLKEKRLDPHFSY-GPIKDIGHICSLEPEDLATESETESEDQACYFFYEPHYKYRNSNRVHRR   82 (142)
Q Consensus         5 lp~G~rF~PtD~-Li~~YL~~ki~g~~l~~-~~I~~~~Dvy~~~P~~L~~~~~~~~~~~~wyFF~~~~~~~~~g~r~~r~   82 (142)
                      |||||||+|||+ ||.+||.+|+.|.+++. .+|+++ |||++|||+|+....  .++.+||||+++++++.+++|.+|+
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~-Diy~~~P~~L~~~~~--~~~~~~yFF~~~~~~~~~~~r~~R~   77 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDV-DIYSAHPWELPAKFK--GGDEEWYFFSPRKKKYPNGGRPNRV   77 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE---GGGS-GGGCHHHSS--S-SSEEEEEEE----------S-EE
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeec-ccCccChHHhhhhcc--CCCceEEEEEecccccCCccccccc
Confidence            899999999999 99999999999999887 789999 999999999994322  3567999999999999999999999


Q ss_pred             ccCCeeEeecCcceEee-CCeEEeeEEEEEEEecCCCCCCCcCCCeEEEEEEeC
Q 032371           83 TEAGQWKITSEDSQIEA-SNRLSGTKKFLTFYRRSPGSKVPVKTDWVMHEYHVK  135 (142)
Q Consensus        83 ~~~G~Wk~~g~~~~i~~-~g~~iG~k~~l~fy~~~~~~~~~~~t~W~M~Ey~l~  135 (142)
                      +++|+||++|+.++|.+ ++.+||+|++|+||.++.+++  .+|+|+||||+|.
T Consensus        78 ~~~G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~--~kt~W~M~EY~L~  129 (129)
T PF02365_consen   78 TGGGYWKSTGKEKPIKDPGGKVIGFKKTLVFYSGKSPNG--KKTGWVMHEYSLE  129 (129)
T ss_dssp             ETTEEEEEECEEEEEEE-TTCEEEEEEEEEEEESSTTS---EEEEEEEEEEEE-
T ss_pred             ccceEEeecccccccccccceeeeeEEEEEEEeccCCCC--CcCCeEEEEEEeC
Confidence            99999999999999999 699999999999998877666  8999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	142
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		1e-10
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		2e-09
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		2e-09

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 61/136 (44%), Gaps = 10/136 (7%)
Query: 2   ESHMGQGYKFQPSD-ELSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESED 60
           E ++  G++F P+D EL    L  K          I ++  +   +P DL   +   + +
Sbjct: 12  ELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEV-DLYKFDPWDLPERALFGARE 70
Query: 61  QACYFFYEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYRRSPGSK 120
              YFF     KY N +R +R    G WK T  D  +    R  G KK L FY      K
Sbjct: 71  W--YFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFY----AGK 124
Query: 121 VP--VKTDWVMHEYHV 134
            P  VKTDW+MHEY +
Sbjct: 125 APRGVKTDWIMHEYRL 140

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 8   GYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFF 66
           G++F P+DE L V  L  K     FS   I +I  +   +P  L  ++    ++   YFF
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALFGEKE--WYFF 76
Query: 67  YEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYRRSPGSKVP--VK 124
                KY N +R +R   +G WK T  D  I    +  G KK L FY      K P   K
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYI----GKAPKGTK 132
Query: 125 TDWVMHEYHV 134
           T+W+MHEY +
Sbjct: 133 TNWIMHEYRL 142

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 8   GYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFF 66
           G++F P+DE L V  L  K     FS   I +I  +   +P  L  ++    ++   YFF
Sbjct: 23  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALFGEKE--WYFF 79
Query: 67  YEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYRRSPGSKVP--VK 124
                KY N +R +R   +G WK T  D  I    +  G KK L FY      K P   K
Sbjct: 80  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYI----GKAPKGTK 135
Query: 125 TDWVMHEYHV 134
           T+W+MHEY +
Sbjct: 136 TNWIMHEYRL 145

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
1ut7_A	171	No apical meristem protein; transcription regulati	9e-33
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	4e-32

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  112 bits (283), Expect = 9e-33
 Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 8/134 (5%)

Query: 8   GYKFQPSD-ELSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFF 66
           G++F P+D EL V  L  K     FS   I +I  +   +P  L  ++     ++  YFF
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKAL--FGEKEWYFF 76

Query: 67  YEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYR-RSPGSKVPVKT 125
                KY N +R +R   +G WK T  D  I    +  G KK L FY  ++P      KT
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG---TKT 133

Query: 126 DWVMHEYHVKDDPS 139
           +W+MHEY + +   
Sbjct: 134 NWIMHEYRLIEPSR 147

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  111 bits (279), Expect = 4e-32
 Identities = 42/133 (31%), Positives = 57/133 (42%), Gaps = 6/133 (4%)

Query: 8   GYKFQPSD-ELSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFF 66
           G++F P+D EL    L  K          I ++  +   +P DL   +   + +   YFF
Sbjct: 18  GFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEV-DLYKFDPWDLPERALFGARE--WYFF 74

Query: 67  YEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYRRSPGSKVPVKTD 126
                KY N +R +R    G WK T  D  +    R  G KK L FY         VKTD
Sbjct: 75  TPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPR--GVKTD 132

Query: 127 WVMHEYHVKDDPS 139
           W+MHEY + D   
Sbjct: 133 WIMHEYRLADAGR 145

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=5.4e-53  Score=312.23  Aligned_cols=132  Identities=32%  Similarity=0.570  Sum_probs=120.0

Q ss_pred             CCCCCCCceEcCCHH-HHHHHHhhhhcCCCCCCCCeeeccCCCCCCccCccccccccCCCceEEEeecCcccccCCCccc
Q 032371            2 ESHMGQGYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFFYEPHYKYRNSNRVH   80 (142)
Q Consensus         2 ~~~lp~G~rF~PtD~-Li~~YL~~ki~g~~l~~~~I~~~~Dvy~~~P~~L~~~~~~~~~~~~wyFF~~~~~~~~~g~r~~   80 (142)
                      +++|||||||+|||| ||.+||++|+.|.+++..+|+++ |||.+|||+||+....  ++.+||||+++.+++++|.|++
T Consensus        12 ~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~ev-Dvy~~~Pw~Lp~~~~~--g~~ewYFFs~r~~ky~~g~R~n   88 (174)
T 3ulx_A           12 ELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEV-DLYKFDPWDLPERALF--GAREWYFFTPRDRKYPNGSRPN   88 (174)
T ss_dssp             TTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEEC-CGGGSCGGGSGGGCSS--CSSEEEEEEECCC-----CCSC
T ss_pred             ccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeec-ccccCCchhhhhhhcc--CCceEEEEeccccccCCCCCce
Confidence            568999999999999 99999999999999999999999 9999999999998653  4679999999999999999999


Q ss_pred             ccccCCeeEeecCcceEeeCCeEEeeEEEEEEEecCCCCCCCcCCCeEEEEEEeCCCC
Q 032371           81 RRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYRRSPGSKVPVKTDWVMHEYHVKDDP  138 (142)
Q Consensus        81 r~~~~G~Wk~~g~~~~i~~~g~~iG~k~~l~fy~~~~~~~~~~~t~W~M~Ey~l~~~~  138 (142)
                      |+|++|+||++|++++|.++|.+||+|++|+||.++++++  .+|+|+||||+|.++.
T Consensus        89 R~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g--~kT~WvMhEY~L~~~~  144 (174)
T 3ulx_A           89 RAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRG--VKTDWIMHEYRLADAG  144 (174)
T ss_dssp             EEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSC--EEEEEEEEEEEECSCC
T ss_pred             eecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCC--CcCCeEEEEEEeCCCC
Confidence            9999999999999999998899999999999999999888  9999999999999864

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=1.9e-52  Score=308.86  Aligned_cols=132  Identities=32%  Similarity=0.546  Sum_probs=118.2

Q ss_pred             CCCCCCCceEcCCHH-HHHHHHhhhhcCCCCCCCCeeeccCCCCCCccCccccccccCCCceEEEeecCcccccCCCccc
Q 032371            2 ESHMGQGYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFFYEPHYKYRNSNRVH   80 (142)
Q Consensus         2 ~~~lp~G~rF~PtD~-Li~~YL~~ki~g~~l~~~~I~~~~Dvy~~~P~~L~~~~~~~~~~~~wyFF~~~~~~~~~g~r~~   80 (142)
                      ++.|||||||+|||| ||.+||++|+.|.+++..+|+++ |||.+|||+||+...  .++.+||||+++.+++++|.|++
T Consensus        14 ~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~-Diy~~~Pw~Lp~~~~--~g~~ewyFFs~r~~k~~~g~R~~   90 (171)
T 1ut7_A           14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKAL--FGEKEWYFFSPRDRKYPNGSRPN   90 (171)
T ss_dssp             SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEEC-CGGGSCGGGHHHHSS--SCSSEEEEEEECCC-------CC
T ss_pred             ccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeec-ccccCChhHhhchhh--cCCccEEEEeccccccCCCCccc
Confidence            468999999999999 99999999999999999999999 999999999999864  35789999999999999999999


Q ss_pred             ccccCCeeEeecCcceEeeCCeEEeeEEEEEEEecCCCCCCCcCCCeEEEEEEeCCCC
Q 032371           81 RRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYRRSPGSKVPVKTDWVMHEYHVKDDP  138 (142)
Q Consensus        81 r~~~~G~Wk~~g~~~~i~~~g~~iG~k~~l~fy~~~~~~~~~~~t~W~M~Ey~l~~~~  138 (142)
                      |+|++|+||++|++++|..++.+||+|++|+||.++.+++  .+|+|+||||+|.+++
T Consensus        91 R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g--~kT~WvMhEY~l~~~~  146 (171)
T 1ut7_A           91 RVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG--TKTNWIMHEYRLIEPS  146 (171)
T ss_dssp             EEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSC--EEEEEEEEEEEECCCC
T ss_pred             ccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCC--CcCCeEEEEEEcCCCc
Confidence            9999999999999999999899999999999999999888  9999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	142
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	6e-24

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 88.9 bits (220), Expect = 6e-24
 Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 6/133 (4%)

Query: 8   GYKFQPSD-ELSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFF 66
           G++F P+D EL V  L  K     FS   I +I  +   +P  L  ++    ++   YFF
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALFGEKE--WYFF 76

Query: 67  YEPHYKYRNSNRVHRRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYRRSPGSKVPVKTD 126
                KY N +R +R   +G WK T  D  I    +  G KK L FY          KT+
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPK--GTKTN 134

Query: 127 WVMHEYHVKDDPS 139
           W+MHEY + +   
Sbjct: 135 WIMHEYRLIEPSR 147

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	142
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=9.5e-52  Score=302.50  Aligned_cols=133  Identities=32%  Similarity=0.541  Sum_probs=118.1

Q ss_pred             CCCCCCCceEcCCHH-HHHHHHhhhhcCCCCCCCCeeeccCCCCCCccCccccccccCCCceEEEeecCcccccCCCccc
Q 032371            2 ESHMGQGYKFQPSDE-LSVSLLKEKRLDPHFSYGPIKDIGHICSLEPEDLATESETESEDQACYFFYEPHYKYRNSNRVH   80 (142)
Q Consensus         2 ~~~lp~G~rF~PtD~-Li~~YL~~ki~g~~l~~~~I~~~~Dvy~~~P~~L~~~~~~~~~~~~wyFF~~~~~~~~~g~r~~   80 (142)
                      |++|||||||+|||+ ||.+||.+|+.|.+++..+|+++ |||++|||+||+...  .++++||||+++.++++++.|.+
T Consensus        14 ~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~-Dvy~~~Pw~Lp~~~~--~~~~~wyFft~~~~k~~~g~r~~   90 (166)
T d1ut7a_          14 QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKAL--FGEKEWYFFSPRDRKYPNGSRPN   90 (166)
T ss_dssp             SSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEEC-CGGGSCGGGHHHHSS--SCSSEEEEEEECCC-------CC
T ss_pred             cccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceec-cCCcCChhhccchhc--cCcceEEEEeeeccccCCCCccc
Confidence            689999999999999 99999999999999999999999 999999999998765  25778999999999999999999


Q ss_pred             ccccCCeeEeecCcceEeeCCeEEeeEEEEEEEecCCCCCCCcCCCeEEEEEEeCCCCC
Q 032371           81 RRTEAGQWKITSEDSQIEASNRLSGTKKFLTFYRRSPGSKVPVKTDWVMHEYHVKDDPS  139 (142)
Q Consensus        81 r~~~~G~Wk~~g~~~~i~~~g~~iG~k~~l~fy~~~~~~~~~~~t~W~M~Ey~l~~~~~  139 (142)
                      |++++|+||++|+++.|.++|.+||+|++|+||+++.+++  .+|+|+||||+|.+++.
T Consensus        91 R~~g~G~Wk~~g~~~~i~~~g~~vG~kk~l~fy~~~~~~~--~~t~W~M~EY~l~~~~~  147 (166)
T d1ut7a_          91 RVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG--TKTNWIMHEYRLIEPSR  147 (166)
T ss_dssp             EEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSC--EEEEEEEEEEEECCCC-
T ss_pred             cccCCCEecccCCCceEecCCcEEEEEEEEEEEecCCCCC--CccCeEEEEEecCCccc
Confidence            9999999999999999998899999999999999999888  89999999999988764