Citrus Sinensis ID: 032380

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKGAAPKGPKLGGGGGKR
Secondary Structure (PSIPRED)
cccccHHHHHHHHcHHHHHHHHccccccccHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MLPWLWVKVFLFANSkckryfhnrlkpskltwTSMYRKQHKKDIAAEAVKKKrrstkkpysrsiVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTsksktqskgsmpkgaapkgpklgggggkr
Flexible Loop (DISEMBL)
MLPWLWVKVFLFAnskckryfhnrlkpskltwtsmyrkqHKKDIaaeavkkkrrstkkpysrsivgatleviqkrrtekpevrdaaREAALREIKerikktkdekrakkaevtsksktqskgsmpkgaapkgpklgggggkr
Low Complexity Region (SEG)
MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIkktkdekrakkaeVTSKSKTQSkgsmpkgaapkgpklgggggkR
Disordered region (IsUnstruct)
**PWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYR*********************************************************************************************************
Disordered Region (DISOPRED)
MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKD****************YSRSIVGATLEVIQK********************************************************************
Disordered Region (DISEMBL)
MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAA***************RSIVGATLEVIQKR***********REAALREIKERIK*******************************************
Disordered Region (DISPRO)
MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHK****************KPYSR*IVGATLEVIQKRRT***EVRDAAREAALREIKERIKKTKD***************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAAxxxxxxxxxxxxxxxxxxxxxVTSKSKTQSKGSMPKGAAPKGPKLGGGGGKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
Q9FUL4	186	60S ribosomal protein L24	N/A	no	0.915	0.698	0.885	2e-52
Q42347	164	60S ribosomal protein L24	yes	no	0.901	0.780	0.798	9e-47
O65743	164	60S ribosomal protein L24	N/A	no	0.852	0.737	0.852	9e-46
P38666	163	60S ribosomal protein L24	no	no	0.852	0.742	0.795	4e-43
P50888	162	60S ribosomal protein L24	N/A	no	0.788	0.691	0.866	6e-43
Q7SDU2	156	60S ribosomal protein L24	N/A	no	0.661	0.602	0.473	1e-16
Q6BNC2	156	60S ribosomal protein L24	yes	no	0.570	0.519	0.475	5e-15
P38665	155	60S ribosomal protein L24	yes	no	0.852	0.780	0.401	1e-14
Q9DFQ7	157	60S ribosomal protein L24	N/A	no	0.908	0.821	0.384	3e-14
Q752U6	155	60S ribosomal protein L24	yes	no	0.556	0.509	0.487	4e-14

>sp|Q9FUL4|RL24_PRUAV 60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1

 Score =  204 bits (518), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 116/131 (88%), Positives = 123/131 (93%), Gaps = 1/131 (0%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           +VFLFANSKCKRYFHNRLKPSKLTWT+MYRKQHKKDIA EAVKK+RR+TKKPYSRSIVGA
Sbjct: 29  QVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGA 88

Query: 68  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKG 127
           TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK+AKKAEVT   K+Q KGS+ KG
Sbjct: 89  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVTKSQKSQGKGSIAKG 148

Query: 128 AA-PKGPKLGG 137
            A PKGPKLGG
Sbjct: 149 GAQPKGPKLGG 159

Prunus avium (taxid: 42229)

>sp|Q42347|RL241_ARATH 60S ribosomal protein L24-1 OS=Arabidopsis thaliana GN=RPL24A PE=1 SV=2

 Score =  185 bits (469), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 103/129 (79%), Positives = 115/129 (89%), Gaps = 1/129 (0%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           +VFLF NSKCKRYFHN+LKPSKL WT+MYRKQHKKD A EAVK++RR+TKKPYSRSIVGA
Sbjct: 29  QVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGA 88

Query: 68  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSK-SKTQSKGSMPK 126
           TLEVIQK+R EKPEVRDAAREAALREIKERIKKTKDEK+AKK E  SK  K+Q KG++PK
Sbjct: 89  TLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKVEYASKQQKSQVKGNIPK 148

Query: 127 GAAPKGPKL 135
            AAPK  K+
Sbjct: 149 SAAPKAAKM 157

Might have an extraribosomal function in reinitiation of translation.

Arabidopsis thaliana (taxid: 3702)

>sp|O65743|RL24_CICAR 60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1

 Score =  181 bits (460), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 104/122 (85%), Positives = 115/122 (94%), Gaps = 1/122 (0%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           +VFLF NSKCKRYFHNRLKPSKLTWT+M+RKQHKKD A EAVKK+RR+TKKPYSRSIVGA
Sbjct: 29  QVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHKKDAAQEAVKKRRRATKKPYSRSIVGA 88

Query: 68  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKS-KTQSKGSMPK 126
           TLEVIQK+RTEKPEVRDAAREAALREIKERIKKTKDEK+AKKAEV SK+ K+Q KG++ K
Sbjct: 89  TLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVASKAQKSQGKGNVQK 148

Query: 127 GA 128
           GA
Sbjct: 149 GA 150

Cicer arietinum (taxid: 3827)

>sp|P38666|RL242_ARATH 60S ribosomal protein L24-2 OS=Arabidopsis thaliana GN=RPL24B PE=2 SV=2

 Score =  172 bits (437), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 97/122 (79%), Positives = 108/122 (88%), Gaps = 1/122 (0%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           +VFLF NSKCKRYFHN+LKPSKL WT+MYRKQHKKD A EAVK++RR+TKKPYSRSIVGA
Sbjct: 29  QVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGA 88

Query: 68  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKG 127
           TLEVIQK+R EKPEVRDAAREAALREIKERIKKTKDEK+AKK E  SK + + K + PK 
Sbjct: 89  TLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKVEFASKQQ-KVKANFPKA 147

Query: 128 AA 129
           AA
Sbjct: 148 AA 149

Might have an extraribosomal function in reinitiation of translation of ETTIN and MONOPTEROS genes that are involved in the auxin-mediated gynoecium patterning.

Arabidopsis thaliana (taxid: 3702)

>sp|P50888|RL24_HORVU 60S ribosomal protein L24 OS=Hordeum vulgare GN=RPL24 PE=2 SV=1

 Score =  172 bits (436), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 97/112 (86%), Positives = 105/112 (93%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           +VFLFANSKCKRYFHNRLKP+KL WT+MYRKQHKKDI AEA KK+RR+TKKPYSRSIVGA
Sbjct: 29  QVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQHKKDIHAEAAKKRRRTTKKPYSRSIVGA 88

Query: 68  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKSKTQ 119
           TLEVIQK+R EKPEVRDAAREAALREIKERIKKTKDEK+AKKAEVT   K+Q
Sbjct: 89  TLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVTKSQKSQ 140

Hordeum vulgare (taxid: 4513)

>sp|Q7SDU2|RL24_NEUCR 60S ribosomal protein L24 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-24 PE=3 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 65/95 (68%), Gaps = 1/95 (1%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           K+F F N K +  F  R  P ++ WT +YR+QHKK I+ E  KK+ R T K   R+IVGA
Sbjct: 27  KIFRFQNGKSESLFLQRKNPRRIAWTVLYRRQHKKGISEEVAKKRSRRTVKA-QRAIVGA 85

Query: 68  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTK 102
           +LEVI++RR+ +PE R AAR AA++E K + ++T+
Sbjct: 86  SLEVIKERRSMRPEARSAARLAAIKESKAKKQETQ 120

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q6BNC2|RL24_DEBHA 60S ribosomal protein L24 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RPL24 PE=3 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 58/82 (70%), Gaps = 1/82 (1%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           K+F F +SK    FH R  P +++WT +YR+QHKK I+ E+ K++ R T K   R+IVGA
Sbjct: 27  KIFRFQSSKSASLFHQRKNPRRISWTVLYRRQHKKGISEESAKRRTRKTVKN-QRAIVGA 85

Query: 68  TLEVIQKRRTEKPEVRDAAREA 89
           +LE+I++RR++KP  R AAR+ 
Sbjct: 86  SLELIKERRSQKPSDRKAARDV 107

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|P38665|RL24_KLULA 60S ribosomal protein L24 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RPL24 PE=3 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/127 (40%), Positives = 79/127 (62%), Gaps = 6/127 (4%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           K+F F +SK    FH R  P ++ WT +YR+ HKK I  E  +K+ R + K   R++VGA
Sbjct: 27  KIFRFQSSKSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVARKRTRKSVKA-QRAVVGA 85

Query: 68  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSK-----SKTQSKG 122
           +LE+I++RR+ KPEVR A R+   +  KE+ K  K  ++++KA++ +      SK Q+KG
Sbjct: 86  SLELIKERRSLKPEVRKAQRDEKKKADKEKKKADKAARKSEKAKLAAAQGSKVSKQQAKG 145

Query: 123 SMPKGAA 129
           +  K AA
Sbjct: 146 AFQKVAA 152

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q9DFQ7|RL24_GILMI 60S ribosomal protein L24 OS=Gillichthys mirabilis GN=rpl24 PE=2 SV=2

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 73/130 (56%), Gaps = 1/130 (0%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           KVF F N+KC+  F  +  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA
Sbjct: 27  KVFQFLNAKCESAFLAKRNPRQINWTVLYRRKHKKGQSEEVTKKRTRRAVK-FQRAITGA 85

Query: 68  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKG 127
           +L  I  +R +KPEVR A RE A+R  KE  K  +  K+   A   + +KT  K  + K 
Sbjct: 86  SLAEIMAKRNQKPEVRKAQREQAIRAAKESKKAKQATKKPAAASAKTSAKTAQKPKIAKP 145

Query: 128 AAPKGPKLGG 137
                P++GG
Sbjct: 146 MKISAPRVGG 155

Gillichthys mirabilis (taxid: 8222)

>sp|Q752U6|RL24_ASHGO 60S ribosomal protein L24 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPL24 PE=3 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 53/80 (66%), Gaps = 1/80 (1%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           KVF F +SK    FH R  P ++ WT +YR+ HKK I  E  KK+ R T K   R++VGA
Sbjct: 27  KVFRFHSSKSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVAKKRSRKTVKA-QRAVVGA 85

Query: 68  TLEVIQKRRTEKPEVRDAAR 87
           +LE+I++RR+ KPE+R A R
Sbjct: 86  SLELIKERRSLKPEIRKAKR 105

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
224084006	155	predicted protein [Populus trichocarpa]	0.915	0.838	0.9	2e-60
224122388	163	predicted protein [Populus trichocarpa]	0.859	0.748	0.893	2e-55
357124341	161	PREDICTED: 60S ribosomal protein L24-lik	0.936	0.826	0.822	8e-55
52783264	186	RecName: Full=60S ribosomal protein L24	0.915	0.698	0.885	1e-50
388512319	162	unknown [Lotus japonicus]	0.809	0.709	0.870	6e-50
224134781	163	predicted protein [Populus trichocarpa]	0.859	0.748	0.877	1e-47
297741090	198	unnamed protein product [Vitis vinifera]	0.852	0.611	0.910	4e-47
224077342	163	predicted protein [Populus trichocarpa]	0.859	0.748	0.877	4e-47
343172474	163	60S ribosomal protein L24-1, partial [Si	0.767	0.668	0.853	6e-47
359490349	163	PREDICTED: 60S ribosomal protein L24 [Vi	0.852	0.742	0.910	8e-47

>gi|224084006|ref|XP_002335364.1| predicted protein [Populus trichocarpa] gi|222833671|gb|EEE72148.1| predicted protein [Populus trichocarpa]

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 117/130 (90%), Positives = 126/130 (96%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           +VFLFANSKCKRYFHNRLKPSKLTWT+MYRKQHKKDIAAE +KK+RR+TKKPYSRSIVGA
Sbjct: 26  QVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAETIKKRRRATKKPYSRSIVGA 85

Query: 68  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKG 127
           TLEVIQK+RTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVT+K +  SKGS+PKG
Sbjct: 86  TLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTAKVQKSSKGSVPKG 145

Query: 128 AAPKGPKLGG 137
           AAPKGPKLGG
Sbjct: 146 AAPKGPKLGG 155

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122388|ref|XP_002318822.1| predicted protein [Populus trichocarpa] gi|224147380|ref|XP_002336467.1| predicted protein [Populus trichocarpa] gi|118481582|gb|ABK92733.1| unknown [Populus trichocarpa] gi|222835080|gb|EEE73529.1| predicted protein [Populus trichocarpa] gi|222859495|gb|EEE97042.1| predicted protein [Populus trichocarpa]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 109/122 (89%), Positives = 118/122 (96%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           +VFLFANSKCKRYFHNRLKPSKLTWT+MYRKQHKKDIAAE +KK+RR+TKKPYSRSIVGA
Sbjct: 29  QVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAETIKKRRRATKKPYSRSIVGA 88

Query: 68  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKG 127
           TLEVIQK+RTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVT+K +  SKGS+PKG
Sbjct: 89  TLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTAKVQKSSKGSVPKG 148

Query: 128 AA 129
           AA
Sbjct: 149 AA 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357124341|ref|XP_003563859.1| PREDICTED: 60S ribosomal protein L24-like [Brachypodium distachyon]

 Score =  218 bits (554), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 111/135 (82%), Positives = 120/135 (88%), Gaps = 2/135 (1%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           +VFLFANSKCKRYFHNRLKP+KLTWT+MYRKQHKKDI AEA KK+RR+TKKPYSRSIVGA
Sbjct: 29  QVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAAKKRRRTTKKPYSRSIVGA 88

Query: 68  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKG 127
           +L+VIQK+R EKPEVRDAAREAALREIKERIKKTKDEKRAKK EVT   KT  KG+ PK 
Sbjct: 89  SLDVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKRAKKVEVTKSHKTAGKGNAPKP 148

Query: 128 AAPKGPKLGGGGGKR 142
              K PKLGGGGGKR
Sbjct: 149 G--KAPKLGGGGGKR 161

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|52783264|sp|Q9FUL4.1|RL24_PRUAV RecName: Full=60S ribosomal protein L24 gi|10180025|gb|AAG13986.1|AF298827_1 60S ribosomal protein L24 [Prunus avium]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 116/131 (88%), Positives = 123/131 (93%), Gaps = 1/131 (0%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           +VFLFANSKCKRYFHNRLKPSKLTWT+MYRKQHKKDIA EAVKK+RR+TKKPYSRSIVGA
Sbjct: 29  QVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGA 88

Query: 68  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKG 127
           TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK+AKKAEVT   K+Q KGS+ KG
Sbjct: 89  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVTKSQKSQGKGSIAKG 148

Query: 128 AA-PKGPKLGG 137
            A PKGPKLGG
Sbjct: 149 GAQPKGPKLGG 159

Source: Prunus avium

Species: Prunus avium

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512319|gb|AFK44221.1| unknown [Lotus japonicus]

 Score =  201 bits (512), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 101/116 (87%), Positives = 110/116 (94%), Gaps = 1/116 (0%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           +VFLF NSKCKRYFHNRLKPS+LTWT+M+RKQHKKDIA EA +KKRRSTKKPYSRSIVGA
Sbjct: 29  QVFLFVNSKCKRYFHNRLKPSRLTWTAMFRKQHKKDIAQEAARKKRRSTKKPYSRSIVGA 88

Query: 68  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKS-KTQSKG 122
           TLEVIQKRRTEKPEVRDAAREAALREIKER+KKTKDEKRAKKAEV +K+ K+Q KG
Sbjct: 89  TLEVIQKRRTEKPEVRDAAREAALREIKERVKKTKDEKRAKKAEVQTKAQKSQGKG 144

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134781|ref|XP_002321904.1| predicted protein [Populus trichocarpa] gi|222868900|gb|EEF06031.1| predicted protein [Populus trichocarpa]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 107/122 (87%), Positives = 118/122 (96%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           +VFLFANSKCKRYFHNRLKPSKLTWT+MYRKQHKKDIAAE +KK+RR+TKKPYSRSIVGA
Sbjct: 29  QVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAETIKKRRRTTKKPYSRSIVGA 88

Query: 68  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKG 127
           TLEVIQK+RTEKPEVRDAAREAALREIKERIKKTKDEK+AKKAEV +K++  SKGS+PKG
Sbjct: 89  TLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVMAKAQKSSKGSLPKG 148

Query: 128 AA 129
           AA
Sbjct: 149 AA 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741090|emb|CBI31821.3| unnamed protein product [Vitis vinifera]

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 112/123 (91%), Positives = 119/123 (96%), Gaps = 2/123 (1%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           +VFLFANSKCKRYFHNRLKPSKLTWT+MYRKQHKKDIAAEAVKKKRR+ KKPYSRSIVGA
Sbjct: 64  QVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRTAKKPYSRSIVGA 123

Query: 68  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKS-KTQSKGSMPK 126
           TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK+AKKAEV +K+ KTQSKG +PK
Sbjct: 124 TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVMAKTQKTQSKG-VPK 182

Query: 127 GAA 129
           GAA
Sbjct: 183 GAA 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077342|ref|XP_002305219.1| predicted protein [Populus trichocarpa] gi|118487980|gb|ABK95811.1| unknown [Populus trichocarpa] gi|222848183|gb|EEE85730.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 107/122 (87%), Positives = 117/122 (95%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           +VFLFANSKCKRYFHN+LKPSKLTWT+MYRKQHKKDIAAE VKK+RR+TKKPYSRSIVGA
Sbjct: 29  QVFLFANSKCKRYFHNKLKPSKLTWTAMYRKQHKKDIAAETVKKRRRTTKKPYSRSIVGA 88

Query: 68  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKG 127
           TLEVIQK+R EKPEVRDAAREAALREIKERIKKTKDEK+AKKAEV SK++  SKGS+PKG
Sbjct: 89  TLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVMSKAQKSSKGSLPKG 148

Query: 128 AA 129
           AA
Sbjct: 149 AA 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172474|gb|AEL98941.1| 60S ribosomal protein L24-1, partial [Silene latifolia] gi|343172476|gb|AEL98942.1| 60S ribosomal protein L24-1, partial [Silene latifolia]

 Score =  192 bits (487), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 93/109 (85%), Positives = 105/109 (96%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           +VFLF NSKCKRYFHN+L+P+KL WT++YRKQHKKDI+AEAVKK+RR+TKKPYSRSIVGA
Sbjct: 29  QVFLFVNSKCKRYFHNKLRPAKLCWTAVYRKQHKKDISAEAVKKRRRATKKPYSRSIVGA 88

Query: 68  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKS 116
           TLEVIQK+R EKPEVRDAAREAALREIKERIKKTKDEKRAKKAEV +K+
Sbjct: 89  TLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVMAKT 137

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490349|ref|XP_002279048.2| PREDICTED: 60S ribosomal protein L24 [Vitis vinifera]

 Score =  191 bits (485), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 112/123 (91%), Positives = 119/123 (96%), Gaps = 2/123 (1%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           +VFLFANSKCKRYFHNRLKPSKLTWT+MYRKQHKKDIAAEAVKKKRR+ KKPYSRSIVGA
Sbjct: 29  QVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRTAKKPYSRSIVGA 88

Query: 68  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKS-KTQSKGSMPK 126
           TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEK+AKKAEV +K+ KTQSKG +PK
Sbjct: 89  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVMAKTQKTQSKG-VPK 147

Query: 127 GAA 129
           GAA
Sbjct: 148 GAA 150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2085246	163	STV1 "SHORT VALVE1" [Arabidops	0.640	0.558	0.868	9.9e-39
TAIR|locus:2040555	164	RPL24A "ribosomal protein L24"	0.640	0.554	0.868	1.3e-38
POMBASE|SPAC6G9.09c	149	rpl2401 "60S ribosomal protein	0.626	0.597	0.488	3.6e-18
POMBASE|SPCC330.14c	149	rpl2402 "60S ribosomal protein	0.626	0.597	0.488	3.6e-18
ASPGD|ASPL0000074183	160	AN8704 [Emericella nidulans (t	0.626	0.556	0.455	7.5e-18
CGD|CAF0006998	155	RPL24A [Candida albicans (taxi	0.619	0.567	0.471	2e-17
DICTYBASE|DDB_G0280229	127	rpl24 "S60 ribosomal protein L	0.626	0.700	0.477	4.1e-17
FB|FBgn0032518	155	RpL24 "Ribosomal protein L24"	0.626	0.574	0.455	2.3e-16
SGD|S000002999	155	RPL24A "Ribosomal 60S subunit	0.626	0.574	0.466	2.3e-16
SGD|S000003380	155	RPL24B "Ribosomal 60S subunit	0.626	0.574	0.466	2.3e-16

TAIR|locus:2085246 STV1 "SHORT VALVE1" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 79/91 (86%), Positives = 86/91 (94%)

Query:     8 KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
             +VFLF NSKCKRYFHN+LKPSKL WT+MYRKQHKKD A EAVK++RR+TKKPYSRSIVGA
Sbjct:    29 QVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGA 88

Query:    68 TLEVIQKRRTEKPEVRDAAREAALREIKERI 98
             TLEVIQK+R EKPEVRDAAREAALREIKERI
Sbjct:    89 TLEVIQKKRAEKPEVRDAAREAALREIKERI 119

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0048467 "gynoecium development" evidence=IMP

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2040555 RPL24A "ribosomal protein L24" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 79/91 (86%), Positives = 86/91 (94%)

Query:     8 KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
             +VFLF NSKCKRYFHN+LKPSKL WT+MYRKQHKKD A EAVK++RR+TKKPYSRSIVGA
Sbjct:    29 QVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGA 88

Query:    68 TLEVIQKRRTEKPEVRDAAREAALREIKERI 98
             TLEVIQK+R EKPEVRDAAREAALREIKERI
Sbjct:    89 TLEVIQKKRAEKPEVRDAAREAALREIKERI 119

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

POMBASE|SPAC6G9.09c rpl2401 "60S ribosomal protein L24 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 44/90 (48%), Positives = 62/90 (68%)

Query:     8 KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
             KVF F N K +  F  R  P +L+WT +YR+ HKK I+ E  KK+ R T K + R IVGA
Sbjct:    27 KVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVK-HQRGIVGA 85

Query:    68 TLEVIQKRRTEKPEVRDAAREAALREIKER 97
              L+VI+++R ++PEVR AAR AAL++ K++
Sbjct:    86 NLDVIKEKRNQRPEVRAAARAAALKQRKDK 115

GO:0002181 "cytoplasmic translation" evidence=ISO

GO:0003723 "RNA binding" evidence=ISO

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

POMBASE|SPCC330.14c rpl2402 "60S ribosomal protein L24 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 44/90 (48%), Positives = 62/90 (68%)

Query:     8 KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
             KVF F N K +  F  R  P +L+WT +YR+ HKK I+ E  KK+ R T K + R IVGA
Sbjct:    27 KVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVK-HQRGIVGA 85

Query:    68 TLEVIQKRRTEKPEVRDAAREAALREIKER 97
              L+VI+++R ++PEVR AAR AAL++ K++
Sbjct:    86 NLDVIKEKRNQRPEVRAAARAAALKQRKDK 115

GO:0002181 "cytoplasmic translation" evidence=ISO

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

ASPGD|ASPL0000074183 AN8704 [Emericella nidulans (taxid:162425)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 41/90 (45%), Positives = 62/90 (68%)

Query:     8 KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
             K+F F N K +  F  R  P ++ WT +YR+QHKK I+ E  KK+ R   K   R+IVGA
Sbjct:    27 KIFRFQNGKSESLFLQRKNPRRIAWTVLYRRQHKKGISEEVAKKRTRRVVKS-QRAIVGA 85

Query:    68 TLEVIQKRRTEKPEVRDAAREAALREIKER 97
             +L+VI++RR+++PE R AAR+ A+++ KE+
Sbjct:    86 SLDVIKERRSQRPEARAAARQQAIKDAKEK 115

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

CGD|CAF0006998 RPL24A [Candida albicans (taxid:5476)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 42/89 (47%), Positives = 62/89 (69%)

Query:     8 KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
             K+F F +SK    F  R  P +++WT +YR+ HKK I+ EA KK+ R T K + R+IVGA
Sbjct:    27 KIFRFQSSKSASLFQQRKNPRRISWTVLYRRHHKKGISEEAAKKRTRKTVK-HQRAIVGA 85

Query:    68 TLEVIQKRRTEKPEVRDAAREAALREIKE 96
             +LE+I++RR++KP  R AAR++ L + KE
Sbjct:    86 SLELIKERRSQKPSDRKAARDSKLAKDKE 114

GO:0005829 "cytosol" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

DICTYBASE|DDB_G0280229 rpl24 "S60 ribosomal protein L24" [Dictyostelium discoideum (taxid:44689)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 43/90 (47%), Positives = 60/90 (66%)

Query:     8 KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
             KVF F N+K +  F  ++ P  + W+ +YR+ +K      + KKK R TKK   R+IVGA
Sbjct:    27 KVFHFINTKVESLFFRKINPRDIRWSMVYRRIYKNTTTDVSAKKKARKTKK-VERNIVGA 85

Query:    68 TLEVIQKRRTEKPEVRDAAREAALREIKER 97
             +LEVIQ++R +KPEV+ AA E A REIKE+
Sbjct:    86 SLEVIQQKRAQKPEVKQAAAEQAKREIKEK 115

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0032518 RpL24 "Ribosomal protein L24" [Drosophila melanogaster (taxid:7227)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 41/90 (45%), Positives = 60/90 (66%)

Query:     8 KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
             K F F + KC+R +  +  P K+TWT +YR++H+K I  EA KK+ R T+K + R+IVGA
Sbjct:    27 KSFTFLDKKCERSYLMKRNPRKVTWTVLYRRKHRKGIEEEASKKRTRRTQK-FQRAIVGA 85

Query:    68 TLEVIQKRRTEKPEVRDAAREAALREIKER 97
             +L  I  +R  KPEVR A R+ A++  KE+
Sbjct:    86 SLAEILAKRNMKPEVRKAQRDQAIKVAKEQ 115

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA

GO:0005840 "ribosome" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0051298 "centrosome duplication" evidence=IMP

SGD|S000002999 RPL24A "Ribosomal 60S subunit protein L24A" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 42/90 (46%), Positives = 56/90 (62%)

Query:     8 KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
             K+F F NSK    F  R  P ++ WT ++RK HKK I  E  KK+ R T K   R I GA
Sbjct:    27 KIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKA-QRPITGA 85

Query:    68 TLEVIQKRRTEKPEVRDAAREAALREIKER 97
             +L++I++RR+ KPEVR A RE  L+  KE+
Sbjct:    86 SLDLIKERRSLKPEVRKANREEKLKANKEK 115

GO:0003723 "RNA binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0002181 "cytoplasmic translation" evidence=TAS

GO:0003735 "structural constituent of ribosome" evidence=TAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=TAS

SGD|S000003380 RPL24B "Ribosomal 60S subunit protein L24B" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 42/90 (46%), Positives = 56/90 (62%)

Query:     8 KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
             K+F F NSK    F  R  P ++ WT ++RK HKK I  E  KK+ R T K   R I GA
Sbjct:    27 KIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKA-QRPITGA 85

Query:    68 TLEVIQKRRTEKPEVRDAAREAALREIKER 97
             +L++I++RR+ KPEVR A RE  L+  KE+
Sbjct:    86 SLDLIKERRSLKPEVRKANREEKLKANKEK 115

GO:0005737 "cytoplasm" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=TAS

GO:0005840 "ribosome" evidence=IEA

GO:0002181 "cytoplasmic translation" evidence=TAS

GO:0003735 "structural constituent of ribosome" evidence=TAS

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0003723 "RNA binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q42347	RL241_ARATH	No assigned EC number	0.7984	0.9014	0.7804	yes	no
Q9FUL4	RL24_PRUAV	No assigned EC number	0.8854	0.9154	0.6989	N/A	no
O65743	RL24_CICAR	No assigned EC number	0.8524	0.8521	0.7378	N/A	no
P50888	RL24_HORVU	No assigned EC number	0.8660	0.7887	0.6913	N/A	no
Q8JGR4	RL24_DANRE	No assigned EC number	0.3692	0.9084	0.8216	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.2940.6.1	annotation not avaliable (155 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_VIII0532	SubName- Full=Putative uncharacterized protein; (112 aa)			•	•					0.474
	estExt_fgenesh4_pm.C_LG_X0765	SubName- Full=Putative uncharacterized protein; (113 aa)			•	•					0.455
	estExt_fgenesh4_kg.C_LG_VIII0028	SubName- Full=Putative uncharacterized protein; (113 aa)			•	•					0.452
	estExt_Genewise1_v1.C_LG_X2037	hypothetical protein (112 aa)			•	•					0.449
	eugene3.00150266	hypothetical protein (316 aa)			•						0.426
	gw1.155.177.1	hypothetical protein (132 aa)			•						0.423
	eugene3.53030001	hypothetical protein (183 aa)			•						0.404

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	142
pfam01246	71	pfam01246, Ribosomal_L24e, Ribosomal protein L24e	2e-14
PTZ00033	125	PTZ00033, PTZ00033, 60S ribosomal protein L24; Pro	3e-06
COG2075	66	COG2075, RPL24A, Ribosomal protein L24E [Translati	1e-05
cd00472	54	cd00472, Ribosomal_L24e_L24, Ribosomal protein L24	3e-04

>gnl|CDD|110260 pfam01246, Ribosomal_L24e, Ribosomal protein L24e

 Score = 63.3 bits (154), Expect = 2e-14
 Identities = 26/45 (57%), Positives = 32/45 (71%)

Query: 8  KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKK 52
          KVF F +SKC++ FH +  P KL WT +YRKQHKK  A EA KK+
Sbjct: 27 KVFRFCSSKCEKNFHMKRNPRKLAWTKLYRKQHKKGEAEEAAKKR 71

Length = 71

>gnl|CDD|140068 PTZ00033, PTZ00033, 60S ribosomal protein L24; Provisional

 Score = 43.5 bits (102), Expect = 3e-06
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 1/96 (1%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
            V  F   KC   +  +  P  L WT  YR+ ++K    + V+++R +      R+IVGA
Sbjct: 31  PVLTFLRPKCFALYMRKKNPRFLPWTRTYRRINRK-TTTDRVQRRRAARTVKVQRAIVGA 89

Query: 68  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 103
            L  IQ+ R    +V  +A+  A+R  K   K  K 
Sbjct: 90  DLSYIQEVRAYVQKVDRSAKAKAVRAEKAERKAAKK 125

Length = 125

>gnl|CDD|224986 COG2075, RPL24A, Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]

 Score = 40.4 bits (95), Expect = 1e-05
 Identities = 20/40 (50%), Positives = 24/40 (60%)

Query: 8  KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAE 47
          KV  F +SKC++ F     P KL WT  YRK HKK+I  E
Sbjct: 27 KVLRFCSSKCEKLFKLGRNPRKLKWTKKYRKMHKKEIKEE 66

Length = 66

>gnl|CDD|100103 cd00472, Ribosomal_L24e_L24, Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24)

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 8  KVFLFANSKCKRYFHNRLKPSKLTWT 33
          KVF F +SKC++ F  +  P KL WT
Sbjct: 27 KVFRFCSSKCEKNFLRKRNPRKLKWT 52

L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identified in bacteria, but a functionally equivalent protein may exist. Bacterial L19 forms an interprotein beta sheet with L14 that is similar to the L24e/L14 interprotein beta sheet observed in the archaeal L24e structures. Some eukaryotic L24 proteins were initially identified as L30, and this alignment model contains several sequences called L30. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
KOG1722	155	consensus 60s ribosomal protein L24 [Translation,	100.0
PTZ00033	125	60S ribosomal protein L24; Provisional	100.0
PF01246	71	Ribosomal_L24e: Ribosomal protein L24e; InterPro:	99.87
COG2075	66	RPL24A Ribosomal protein L24E [Translation, riboso	99.86
PRK14891	131	50S ribosomal protein L24e/unknown domain fusion p	99.85
KOG1723	162	consensus 60s ribosomal protein L30 isolog [Transl	99.78
cd00472	54	Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a	99.73
PRK00807	52	50S ribosomal protein L24e; Validated	99.68
smart00746	39	TRASH metallochaperone-like domain.	95.92
PF04945	47	YHS: YHS domain; InterPro: IPR007029 This short pr	93.51
COG3350	53	Uncharacterized conserved protein [Function unknow	91.92
PF08394	37	Arc_trans_TRASH: Archaeal TRASH domain; InterPro:	86.57

>KOG1722 consensus 60s ribosomal protein L24 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.5e-45  Score=283.63  Aligned_cols=134  Identities=49%  Similarity=0.716  Sum_probs=123.8

Q ss_pred             cccccCceEeeechHHHHHhhccCCCcchhHHHHHHHhhhhhHHHHHHHhHhccCCCccccchhhhcHHHHHHHHhcChH
Q 032380            2 LPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPE   81 (142)
Q Consensus         2 ~vr~Dgkvf~FcssKC~~~f~~krnPRKl~WT~~yRr~~kK~~~~e~~~krrR~~~~k~~Raivg~SLe~I~~kR~qk~e   81 (142)
                      |||-||+||.|+|+||+++|++++|||+|.||++||+.|+||+++|.+++++|+++.+|||+|||+||++|+++|||+||
T Consensus        21 ~vR~D~Kvf~Fln~Kc~~~f~~rrnPr~l~WTvLyR~khkKg~~ee~~kkrtrrt~k~~qRaI~GasL~~I~~KRn~kpe  100 (155)
T KOG1722|consen   21 FVRGDGKVFRFLNSKCESLFLQRRNPRRLAWTVLYRKKHKKGIQEEAAKKRTRRTVKKFQRAIVGASLDVILEKRNQKPE  100 (155)
T ss_pred             EEecCCeeeeehhhhhHHHHHhccChhhhhHHHHHHHHhhcchhHHHHHHHhhhhhhhhhhhhccccHHHHHHHhccChH
Confidence            89999999999999999999999999999999999999999999999999999999889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccccCC-CCCCCCCCCCCCCCCCCC
Q 032380           82 VRDAAREAALREIKERIKKTKDEKRAKKAEVTSKSKTQSK-GSMPKGAAPKGPKLGGGG  139 (142)
Q Consensus        82 ~r~a~re~a~~e~Kek~k~~~a~kka~ka~~~~~~k~~~k-~~~~k~~~~~~~~~~g~~  139 (142)
                      +|+++||++++++||++++..+++++.++..++    +|+ +++.++++.++|+|||+.
T Consensus       101 vR~a~Re~alK~aKe~~ka~k~ak~A~K~~~as----~~k~qk~~k~~k~aaprVggkr  155 (155)
T KOG1722|consen  101 VRKAAREAALKKAKEKKKATKAAKKAKKAKSAS----APKKQKAKKNAKVAAPRVGGKR  155 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccccc----cccccchhhhhhhhcccccCCC
Confidence            999999999999999999998888665554333    333 889999999999999974

>PTZ00033 60S ribosomal protein L24; Provisional

Probab=100.00  E-value=6.5e-40  Score=248.42  Aligned_cols=100  Identities=27%  Similarity=0.390  Sum_probs=94.1

Q ss_pred             Cccc----ccCceEeeechHHHHHhhccCCCcchhHHHHHHHhhhhhHHHHHHHhHhccCCCccccchhhhcHHHHHHHH
Q 032380            1 MLPW----LWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRR   76 (142)
Q Consensus         1 m~vr----~Dgkvf~FcssKC~~~f~~krnPRKl~WT~~yRr~~kK~~~~e~~~krrR~~~~k~~Raivg~SLe~I~~kR   76 (142)
                      |||+    +||+||+||||||+++|++++|||+|.||++||++|+||+++++ .+++++++++|||+|||+|||+|+++|
T Consensus        20 ~~Vr~~~~~Dgkv~~F~~sKc~~~~~~krnPRkl~WT~~yRr~~kK~~~e~~-~kkR~~rtvK~qRaivg~sLe~I~~kR   98 (125)
T PTZ00033         20 RYVPFAFLSTKPVLTFLRPKCFALYMRKKNPRFLPWTRTYRRINRKTTTDRV-QRRRAARTVKVQRAIVGADLSYIQEVR   98 (125)
T ss_pred             EeeecccCCCCCEEEEecHHHHHHHHCcCCCccchHHHHHHHHhCCcchhHH-HHHHhcCCccchHHHHHHHHHHHHHHH
Confidence            7999    99999999999999999999999999999999999999987776 577777788999999999999999999


Q ss_pred             hcChHHHHHHHHHHHHHHHHHhhhh
Q 032380           77 TEKPEVRDAAREAALREIKERIKKT  101 (142)
Q Consensus        77 ~qk~e~r~a~re~a~~e~Kek~k~~  101 (142)
                      ||+||++.++++++++++||+.++.
T Consensus        99 ~~k~evr~aar~~a~r~~Ke~~~~~  123 (125)
T PTZ00033         99 AYVQKVDRSAKAKAVRAEKAERKAA  123 (125)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999988754

>PF01246 Ribosomal_L24e: Ribosomal protein L24e; InterPro: IPR000988 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.87  E-value=4e-24  Score=148.67  Aligned_cols=51  Identities=47%  Similarity=0.718  Sum_probs=39.6

Q ss_pred             CcccccCceEeeechHHHHHhhccCCCcchhHHHHHHHhhhhhHHHHHHHh
Q 032380            1 MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKK   51 (142)
Q Consensus         1 m~vr~Dgkvf~FcssKC~~~f~~krnPRKl~WT~~yRr~~kK~~~~e~~~k   51 (142)
                      |||++||+||+|||+||++||.+++|||+|.||.+||++|+|++++|++++
T Consensus        20 ~~Vr~DG~v~~F~s~Kc~~~~~~krnPrkl~WT~~~Rr~~kK~~~~~~~kk   70 (71)
T PF01246_consen   20 MYVRNDGKVFYFCSSKCEKLFKLKRNPRKLKWTVAYRRQHKKGQSEEAAKK   70 (71)
T ss_dssp             EEE-TTS-EEEESSHHHHHHHHTT--GGGSTTSTTTCHHH-----SSSSSS
T ss_pred             EEEecCCCeEEEeCHHHHHHHHccCCcccchhHHHHHHHhCchhhhhHhhc
Confidence            799999999999999999999999999999999999999999999887643

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeabacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families [] consists of mammalian ribosomal protein L24; yeast ribosomal protein L30A/B (Rp29) (YL21); Kluyveromyces lactis ribosomal protein L30; Arabidopsis thaliana ribosomal protein L24 homolog; Haloarcula marismortui ribosomal protein HL21/HL22; and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ1201. These proteins have 60 to 160 amino-acid residues. This entry represents proteins related to the L24e ribosomal proteins.; PDB: 2ZKR_u 1VQ9_U 1VQL_U 1KD1_V 1VQP_U 3CCM_U 3CD6_U 3CCL_U 3CCR_U 1Q86_V ....

>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=1.8e-22  Score=138.73  Aligned_cols=46  Identities=43%  Similarity=0.658  Sum_probs=44.3

Q ss_pred             CcccccCceEeeechHHHHHhhccCCCcchhHHHHHHHhhhhhHHH
Q 032380            1 MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAA   46 (142)
Q Consensus         1 m~vr~Dgkvf~FcssKC~~~f~~krnPRKl~WT~~yRr~~kK~~~~   46 (142)
                      |||+|||+||+||||||+++|.++||||+|.||..||+++++++.+
T Consensus        20 m~Vr~Dg~v~~FcssKc~k~~~~~rnPRk~~WT~~~~~~~~k~~~~   65 (66)
T COG2075          20 MYVRNDGKVLRFCSSKCEKLFKLGRNPRKLKWTKKYRKMHKKEIKE   65 (66)
T ss_pred             EEEecCCeEEEEechhHHHHHHccCCCccchhHHHHHHHHHhhhcc
Confidence            8999999999999999999999999999999999999999998764

>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional

Probab=99.85  E-value=2.8e-22  Score=153.07  Aligned_cols=44  Identities=23%  Similarity=0.347  Sum_probs=42.7

Q ss_pred             CcccccCceEeeechHHHHHhhccCCCcchhHHHHHHHhhhhhH
Q 032380            1 MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDI   44 (142)
Q Consensus         1 m~vr~Dgkvf~FcssKC~~~f~~krnPRKl~WT~~yRr~~kK~~   44 (142)
                      |||||||+||+||||||++||+++||||+|.||++||+.+++..
T Consensus        21 ~fVR~DGkvf~FcssKC~k~f~~kRnPRKlkWT~~yRk~~g~~~   64 (131)
T PRK14891         21 MFVRKDGTVLHFVDSKCEKNYDLGREARDLEWTEAGRAEKGPAA   64 (131)
T ss_pred             EEEecCCCEEEEecHHHHHHHHccCCCccchhHHHHHHHcCchh
Confidence            89999999999999999999999999999999999999999963

>KOG1723 consensus 60s ribosomal protein L30 isolog [Translation, ribosomal structure and biogenesis]

Probab=99.78  E-value=8.1e-20  Score=144.06  Aligned_cols=99  Identities=26%  Similarity=0.565  Sum_probs=87.3

Q ss_pred             CcccccCceEeeechHHHHHhhccCCCcchhHHHHHHHhhhhhHHHHHH--HhHhccCCCccccchhhhcHHHHHH----
Q 032380            1 MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAV--KKKRRSTKKPYSRSIVGATLEVIQK----   74 (142)
Q Consensus         1 m~vr~Dgkvf~FcssKC~~~f~~krnPRKl~WT~~yRr~~kK~~~~e~~--~krrR~~~~k~~Raivg~SLe~I~~----   74 (142)
                      |||+||.++|.||.|+|+++|.+++|||++.||.++|+++++++..|.+  ++.+|+++++|+|+.++.||++|+.    
T Consensus        20 ~Fv~Nd~k~f~Fc~skc~k~f~~k~nPrk~~~tka~rKaagre~~~d~~~e~~~rrn~~~~y~r~~~~~Ti~a~k~v~~i   99 (162)
T KOG1723|consen   20 MFVRNDCKVFRFCKSKCHKNFKQKKNPRKVGWTKAFRKAAGRELVTDSTFEFEKRRNVPRKYDRELINKTIDAMKRVLEI   99 (162)
T ss_pred             EEEecCcchhHHHHhhhhhhhhhhcCCCccchHHHHHHHhhhhHhhhhhHHHHHhcCcchhhcccchhhHHHHHHHHHhh
Confidence            8999999999999999999999999999999999999999999999988  5779999999999999999999876    


Q ss_pred             --HHhcCh------HHHHHHHHHHHHHHHHHhh
Q 032380           75 --RRTEKP------EVRDAAREAALREIKERIK   99 (142)
Q Consensus        75 --kR~qk~------e~r~a~re~a~~e~Kek~k   99 (142)
                        +|.+..      ..++++...++.+++.+++
T Consensus       100 ~~~~~~~~i~~rL~~~ke~~~~~d~k~v~~n~~  132 (162)
T KOG1723|consen  100 KQKREAHFIGNRLKKGKEAQLVQDIKEVKQNIH  132 (162)
T ss_pred             cccchhhhhhhccCccchhccchhHHHHHhhhh
Confidence              333332      3677777788888887765

>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24)

Probab=99.73  E-value=5.9e-19  Score=117.10  Aligned_cols=35  Identities=40%  Similarity=0.620  Sum_probs=33.7

Q ss_pred             CcccccCceEeeechHHHHHhhccCCCcchhHHHH
Q 032380            1 MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSM   35 (142)
Q Consensus         1 m~vr~Dgkvf~FcssKC~~~f~~krnPRKl~WT~~   35 (142)
                      |||++||+||+|||+||++||.+++|||+|.||++
T Consensus        20 ~~Vr~Dgkv~~F~s~Kc~~~~~~krnPRkv~WT~~   54 (54)
T cd00472          20 MYVRNDGKVFRFCSSKCEKNFLRKRNPRKLKWTVA   54 (54)
T ss_pred             EEEecCCCEEEEECHHHHHHHHCcCCCCcceeecC
Confidence            89999999999999999999999999999999963

L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identifi

>PRK00807 50S ribosomal protein L24e; Validated

Probab=99.68  E-value=1e-17  Score=110.11  Aligned_cols=34  Identities=29%  Similarity=0.498  Sum_probs=33.1

Q ss_pred             CcccccCceEeeechHHHHHhhccCCCcchhHHH
Q 032380            1 MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTS   34 (142)
Q Consensus         1 m~vr~Dgkvf~FcssKC~~~f~~krnPRKl~WT~   34 (142)
                      |||++||+||+|||+||+++|++++|||+|.||.
T Consensus        18 ~~vr~Dgkv~~Fcs~KC~~~f~~~~nprk~~WT~   51 (52)
T PRK00807         18 MYVKKDGTILYFCSSKCEKNYKLGRVPRKLKWTK   51 (52)
T ss_pred             EEEEeCCcEEEEeCHHHHHHHHccCCCCcccccc
Confidence            6899999999999999999999999999999996

>smart00746 TRASH metallochaperone-like domain

Probab=95.92  E-value=0.0057  Score=33.28  Aligned_cols=21  Identities=38%  Similarity=0.501  Sum_probs=18.0

Q ss_pred             cccCceEeeechHHHHHhhcc
Q 032380            4 WLWVKVFLFANSKCKRYFHNR   24 (142)
Q Consensus         4 r~Dgkvf~FcssKC~~~f~~k   24 (142)
                      ..||++++|||..|...|...
T Consensus        18 ~~~g~~~~FCs~~c~~~~~~~   38 (39)
T smart00746       18 VNDGKVFYFCSSKCLSKFKKK   38 (39)
T ss_pred             EECCEEEEEeCHHHHHHHHhc
Confidence            378999999999999988653

>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long

Probab=93.51  E-value=0.059  Score=33.71  Aligned_cols=21  Identities=19%  Similarity=0.357  Sum_probs=18.0

Q ss_pred             ccccCceEeeechHHHHHhhc
Q 032380            3 PWLWVKVFLFANSKCKRYFHN   23 (142)
Q Consensus         3 vr~Dgkvf~FcssKC~~~f~~   23 (142)
                      +.-+|++|+|||.-|...|..
T Consensus        18 ~~y~G~~Y~FCS~~C~~~F~~   38 (47)
T PF04945_consen   18 VEYNGRTYYFCSEGCKEKFEA   38 (47)
T ss_dssp             EEETTEEEEESSHHHHHHHHC
T ss_pred             EEECCEEEEEcCHHHHHHHHH
Confidence            346899999999999999863

It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....

>COG3350 Uncharacterized conserved protein [Function unknown]

Probab=91.92  E-value=0.13  Score=34.36  Aligned_cols=21  Identities=29%  Similarity=0.569  Sum_probs=17.5

Q ss_pred             ccCceEeeechHHHHHhhccCCC
Q 032380            5 LWVKVFLFANSKCKRYFHNRLKP   27 (142)
Q Consensus         5 ~Dgkvf~FcssKC~~~f~~krnP   27 (142)
                      -+|+.|+|||..|...|.  .||
T Consensus        23 Y~GktYYFcse~~~~~F~--~~P   43 (53)
T COG3350          23 YGGKTYYFCSEECKEKFK--DNP   43 (53)
T ss_pred             eCCEEEEEeCHHHHHHHH--HCH
Confidence            479999999999988884  455

>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators

Probab=86.57  E-value=0.54  Score=29.18  Aligned_cols=23  Identities=22%  Similarity=0.430  Sum_probs=19.8

Q ss_pred             cccccCceEeeechHHHHHhhcc
Q 032380            2 LPWLWVKVFLFANSKCKRYFHNR   24 (142)
Q Consensus         2 ~vr~Dgkvf~FcssKC~~~f~~k   24 (142)
                      -++-++++|+||..-|.+-|..+
T Consensus        14 ~~k~~~~~y~fCC~tC~~~fk~k   36 (37)
T PF08394_consen   14 VVKIGNKVYYFCCPTCLSQFKKK   36 (37)
T ss_pred             EEEECCeEEEEECHHHHHHHHhh
Confidence            36779999999999999998754

It is thought to function as a metal-sensing regulatory module [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	142
3izr_Z	162	Localization Of The Large Subunit Ribosomal Protein		2e-44
2zkr_u	157	Structure Of A Mammalian Ribosomal 60s Subunit With		8e-14
3izs_Z	155	Localization Of The Large Subunit Ribosomal Protein		2e-13
4a17_T	158	T.Thermophila 60s Ribosomal Subunit In Complex With		3e-04

>pdb|3IZR|Z Chain Z, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 162

Iteration: 1
 Score =  174 bits (440), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/113 (77%), Positives = 95/113 (84%)
Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           +VFLFANSKCKRYFHNRLKP+KLTWT+MYRKQHKKDI AEAVKK+RR+TKKPYSRSIVGA
Sbjct: 29  QVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAVKKRRRTTKKPYSRSIVGA 88
Query: 68  TLEVIQKRRTEKPEVRDAAREAALREIKERIXXXXXXXXXXXXXVTSKSKTQS 120
           TLEVIQK+R+EKPEVRDAAREAALREIKERI             V    KTQS
Sbjct: 89  TLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQS 141

>pdb|2ZKR|UU Chain u, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 157

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 57/86 (66%), Gaps = 3/86 (3%)
Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKK-RRSTKKPYSRSIVG 66
           KVF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RR+ K  + R+I G
Sbjct: 27  KVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITG 84
Query: 67  ATLEVIQKRRTEKPEVRDAAREAALR 92
           A+L  I  +R +KPEVR A RE A+R
Sbjct: 85  ASLADIMAKRNQKPEVRKAQREQAIR 110

>pdb|3IZS|Z Chain Z, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 155

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           K+F F NSK    F  R  P ++ WT ++RK HKK I  E  KK+ R T K   R I GA
Sbjct: 27  KIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKA-QRPITGA 85
Query: 68  TLEVIQKRRTEKPEVRDAAR 87
           +L++I++RR+ KPEVR A R
Sbjct: 86  SLDLIKERRSLKPEVRKANR 105

>pdb|4A17|T Chain T, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 158

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 10  FLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAE-AVKKKRRSTKKPYSRSIVGAT 68
           F F   K K     ++K  K+TWT   R+  KK  A + A KKK+R+     +R+IVG +
Sbjct: 31  FFFLTKKAKCLSLRKVKAQKITWTIARRRLWKKVKATDIAQKKKKRNV--TVARAIVGIS 88
Query: 69  LEVIQKRRTEKPEVRDAAREAALREIKER 97
           LE I +R+      + A  E A+RE+K++
Sbjct: 89  LEEINRRKNLDASHKKAEAEKAVRELKQK 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
3iz5_Z	162	60S ribosomal protein L24 (L24E); eukaryotic ribos	7e-21
2zkr_u	157	60S ribosomal protein L24; protein-RNA complex, 60	8e-20
4a17_T	158	RPL24, 60S ribosomal protein L21; eukaryotic ribos	4e-17
3izc_Z	155	60S ribosomal protein RPL24 (L24E); eukaryotic rib	4e-16
1vq8_U	66	50S ribosomal protein L24E; ribosome 50S, protein-	2e-07
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-05
3jyw_S	45	60S ribosomal protein L24(A); eukaryotic ribosome,	8e-05

>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 157

 Score = 79.3 bits (195), Expect = 8e-20
 Identities = 49/130 (37%), Positives = 73/130 (56%), Gaps = 1/130 (0%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           KVF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ R   K + R+I GA
Sbjct: 27  KVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK-FQRAITGA 85

Query: 68  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKG 127
           +L  I  +R +KPEVR A RE A+R  KE  K  +  K+   A   + +K   K  + K 
Sbjct: 86  SLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKP 145

Query: 128 AAPKGPKLGG 137
                P++GG
Sbjct: 146 VKVSAPRVGG 155

>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T Length = 158

 Score = 72.1 bits (176), Expect = 4e-17
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 1/130 (0%)

Query: 8   KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGA 67
           + F F   K K     ++K  K+TWT   R+  KK  A +  +KK++      +R+IVG 
Sbjct: 29  RGFFFLTKKAKCLSLRKVKAQKITWTIARRRLWKKVKATDIAQKKKKRNVT-VARAIVGI 87

Query: 68  TLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKG 127
           +LE I +R+      + A  E A+RE+K++     ++KRA +       K   K    K 
Sbjct: 88  SLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKT 147

Query: 128 AAPKGPKLGG 137
             P G K G 
Sbjct: 148 KQPVGAKGGK 157

>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ... Length = 66

 Score = 44.4 bits (105), Expect = 2e-07
 Identities = 8/37 (21%), Positives = 13/37 (35%)

Query: 8  KVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDI 44
              F +SKC+       +   L WT   R +  +  
Sbjct: 27 ATTHFCSSKCENNADLGREARNLEWTDTARGEAGEAE 63

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.5 bits (94), Expect = 5e-05
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 70  EVIQKRRTEKP---EVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKSKTQSK 121
           E I+K R E+    +  DAA +   +E +E+ KK  +E   +++E   K+K  ++
Sbjct: 85  ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139

>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} Length = 45

 Score = 37.3 bits (87), Expect = 8e-05
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 8  KVFLFANSKCKRYFHNRLKPSKLTWT 33
          K+F F NSK    F  R  P ++ WT
Sbjct: 20 KIFRFQNSKSASLFKQRKNPRRIAWT 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
3iz5_Z	162	60S ribosomal protein L24 (L24E); eukaryotic ribos	100.0
2zkr_u	157	60S ribosomal protein L24; protein-RNA complex, 60	100.0
4a17_T	158	RPL24, 60S ribosomal protein L21; eukaryotic ribos	100.0
3izc_Z	155	60S ribosomal protein RPL24 (L24E); eukaryotic rib	100.0
1vq8_U	66	50S ribosomal protein L24E; ribosome 50S, protein-	99.89
3j21_V	66	50S ribosomal protein L24E; archaea, archaeal, KIN	99.82
3jyw_S	45	60S ribosomal protein L24(A); eukaryotic ribosome,	99.76

>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=9.5e-48  Score=299.66  Aligned_cols=137  Identities=35%  Similarity=0.565  Sum_probs=36.8

Q ss_pred             CcccccCceEeeechHHHHHhhccCCCcchhHHHHHHHhhhhhHHHHHHHhHhccCCCccccchhhhcHHHHHHHHhcCh
Q 032380            1 MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKP   80 (142)
Q Consensus         1 m~vr~Dgkvf~FcssKC~~~f~~krnPRKl~WT~~yRr~~kK~~~~e~~~krrR~~~~k~~Raivg~SLe~I~~kR~qk~   80 (142)
                      |||+|||+||+||||||++||++++|||+|.||.+||++|+||+++|..+++++ ++++|||+|||+||++|+++|||+|
T Consensus        20 ~~Vr~Dgkvf~FcssKC~k~f~~krnPRKl~WT~~yRr~~kK~~~~e~~KkR~r-~~vK~~R~ivg~sl~~I~~kR~qkp   98 (157)
T 2zkr_u           20 RYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTR-RAVKFQRAITGASLADIMAKRNQKP   98 (157)
T ss_dssp             EEECTTSCEEEESSHHHHHHHHTTCCTTTCTTCSTTC-------------------------------------------
T ss_pred             EEEeeCCcEEEEecHHHHHHHHccCCcccchhHHHHHHHhcchHHHHHHHHHhc-CccceeHHHHHhhHHHHHHHHccCH
Confidence            899999999999999999999999999999999999999999999876544443 5669999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCCC
Q 032380           81 EVRDAAREAALREIKERIKKTKDEKRAKKAEVTSKSKTQSKGSMPKGAAPKGPKLGGG  138 (142)
Q Consensus        81 e~r~a~re~a~~e~Kek~k~~~a~kka~ka~~~~~~k~~~k~~~~k~~~~~~~~~~g~  138 (142)
                      |+|.++||++|+|+||+++++++.++++.+...+..+++++++..++.+..+|+|||+
T Consensus        99 evr~a~r~~ai~~~Ke~kk~~~~~kk~~~~~~~~~~~~~~~~k~~k~~~k~a~~v~g~  156 (157)
T 2zkr_u           99 EVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGK  156 (157)
T ss_dssp             ----------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccchhhhccccccccCCCCCCC
Confidence            9999999999999999999999988887654444335666777788888888999975

>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T

Probab=100.00  E-value=6.5e-46  Score=289.48  Aligned_cols=113  Identities=27%  Similarity=0.370  Sum_probs=40.8

Q ss_pred             CcccccCceEeeechHHHHHhhccCCCcchhHHHHHHHhhhhhHHHHHHHhHhccCCCccccchhhhcHHHHHHHHhcCh
Q 032380            1 MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKP   80 (142)
Q Consensus         1 m~vr~Dgkvf~FcssKC~~~f~~krnPRKl~WT~~yRr~~kK~~~~e~~~krrR~~~~k~~Raivg~SLe~I~~kR~qk~   80 (142)
                      |||+|||+||+||||||++||++++|||+|.||.+||++|+||+++|++ +++++++++|||+|||+||++|+++|||+|
T Consensus        22 ~fVr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRr~~kK~~~~e~~-kkr~~r~vK~~R~ivg~sl~~I~~kR~qkp  100 (158)
T 4a17_T           22 RFIAKDGRGFFFLTKKAKCLSLRKVKAQKITWTIARRRLWKKVKATDIA-QKKKKRNVTVARAIVGISLEEINRRKNLDA  100 (158)
T ss_dssp             EEECTTSCEEEESCHHHHHHHHHTCCGGGSTTSHHHHHHHC---------------------------------------
T ss_pred             EEEeeCCceEEEEcHHHHHHHHcccCcccchhHHHHHHHhCCcchHHHH-HHHhcCCcccchhhhhhhHHHHHHHHccCH
Confidence            8999999999999999999999999999999999999999999999988 556666779999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032380           81 EVRDAAREAALREIKERIKKTKDEKRAKKAEVTS  114 (142)
Q Consensus        81 e~r~a~re~a~~e~Kek~k~~~a~kka~ka~~~~  114 (142)
                      |+|.++||++|+|+||+++++++.++++++..++
T Consensus       101 e~r~a~re~ai~~~Kekkka~~~~kka~~a~~~~  134 (158)
T 4a17_T          101 SHKKAEAEKAVRELKQKKANDIEKKRADRKLQGK  134 (158)
T ss_dssp             ----------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999999999999999999999988876553

>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...

Probab=99.89  E-value=5.1e-25  Score=150.42  Aligned_cols=46  Identities=20%  Similarity=0.202  Sum_probs=36.7

Q ss_pred             CcccccCceEeeechHHHHHhhccCCCcchhHHHHHHHhhhhhHHH
Q 032380            1 MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAA   46 (142)
Q Consensus         1 m~vr~Dgkvf~FcssKC~~~f~~krnPRKl~WT~~yRr~~kK~~~~   46 (142)
                      |||+|||+||+||||||++||++++|||+|.||++||++|+||+++
T Consensus        20 ~~Vr~Dgkvf~FcssKc~k~f~~krnPRkl~WT~~yRr~~kK~~~~   65 (66)
T 1vq8_U           20 MFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGEAEDE   65 (66)
T ss_dssp             EEECTTSCEEEESCHHHHHHHHTTCCGGGCTTSTTTC---------
T ss_pred             EEEeeCCcEEEEECHHHHHHHHcccCcccchhHHHHHHHhcccccc
Confidence            8999999999999999999999999999999999999999998865

>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.82  E-value=1.9e-21  Score=132.79  Aligned_cols=41  Identities=32%  Similarity=0.619  Sum_probs=39.2

Q ss_pred             CcccccCceEeeechHHHHHhhccCCCcchhHHHHHHHhhh
Q 032380            1 MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHK   41 (142)
Q Consensus         1 m~vr~Dgkvf~FcssKC~~~f~~krnPRKl~WT~~yRr~~k   41 (142)
                      |||+|||+||+||||||++||++++|||+|.||++||+..-
T Consensus        21 ~~Vr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRk~~~   61 (66)
T 3j21_V           21 MYVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEARL   61 (66)
T ss_dssp             EEECSSSCEEEESSHHHHHHHHTTCCTTTCSSSHHHHHHHH
T ss_pred             EEEecCCcEEEEECHHHHHHHHcCCCcccchHHHHHHHHhh
Confidence            89999999999999999999999999999999999998754

>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=99.76  E-value=5.6e-20  Score=117.21  Aligned_cols=33  Identities=33%  Similarity=0.600  Sum_probs=32.6

Q ss_pred             CcccccCceEeeechHHHHHhhccCCCcchhHH
Q 032380            1 MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWT   33 (142)
Q Consensus         1 m~vr~Dgkvf~FcssKC~~~f~~krnPRKl~WT   33 (142)
                      |||+|||+||+||||||++||++++|||+|.||
T Consensus        13 ~~Vr~Dgkvf~FcssKc~k~~~~krnPrkl~WT   45 (45)
T 3jyw_S           13 LFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWT   45 (45)
T ss_dssp             EECTTTSCCCCCCSHHHHGGGTSCCCTTTCCCC
T ss_pred             EEEecCCCEEEEECHHHHHHHHcCCCCccCccC
Confidence            899999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	142
d1vqou1	53	g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon	8e-06

>d1vqou1 g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 53

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Ribosomal protein L24e
domain: Ribosomal protein L24e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 38.9 bits (91), Expect = 8e-06
 Identities = 8/30 (26%), Positives = 11/30 (36%)

Query: 8  KVFLFANSKCKRYFHNRLKPSKLTWTSMYR 37
              F +SKC+       +   L WT   R
Sbjct: 24 ATTHFCSSKCENNADLGREARNLEWTDTAR 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	142
d1vqou1	53	Ribosomal protein L24e {Archaeon Haloarcula marism	99.8

>d1vqou1 g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Ribosomal protein L24e
domain: Ribosomal protein L24e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.80  E-value=1.8e-21  Score=126.42  Aligned_cols=37  Identities=24%  Similarity=0.281  Sum_probs=36.2

Q ss_pred             CcccccCceEeeechHHHHHhhccCCCcchhHHHHHH
Q 032380            1 MLPWLWVKVFLFANSKCKRYFHNRLKPSKLTWTSMYR   37 (142)
Q Consensus         1 m~vr~Dgkvf~FcssKC~~~f~~krnPRKl~WT~~yR   37 (142)
                      |||++||+||+||||||++||++++|||+|.||++||
T Consensus        17 ~~Vr~Dg~v~~F~ssKc~~~~~~krnPrk~~WT~~yR   53 (53)
T d1vqou1          17 MFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR   53 (53)
T ss_dssp             EEECTTSCEEEESCHHHHHHHHTTCCGGGCTTSTTTC
T ss_pred             EEEecCCCEEEEeCHHHHHHHHcCCCcccceeeeccC
Confidence            8999999999999999999999999999999999987