Citrus Sinensis ID: 032383

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
cccccccccccccccccccccccccHHHccccccccccccccccccccEEEEEEEEEEcccccccccEEEEEEEccccEEEEEEcccccccccccccEEEEccccccccccccccccEEEEEEEcccHHHHHHHcccccccc
cccccHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccccccccccEEEEEEEEEccccccHHHHHEEEEEEEcccEEEEEEcccccEEEEccccEEEEEccccccccccccccEEEEEEEEcccHHHHHHHcccccccc
mgktrgmgagrklkthrrtqrwadksykkshlgnewkkpfagsshakgIVLEKIGieakqpnsaiRKCARVQLIKNGKKIAafvpndgclnyiEENDEVLIAGfgrkghavgdipgVRFKVVKVSGVSLLALFkekkekprs
mgktrgmgagrklkthrrtqrwadksykkshlgnewkkpfagsshAKGIVLEKIGieakqpnsaiRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVsllalfkekkekprs
MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
********************************************HAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF*********
*GKTRGMGAGR*******************************SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLAL**********
******************************HLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFK********
***TRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEK******
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MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query142 2.2.26 [Sep-21-2011]
Q9M5Z9142 40S ribosomal protein S23 N/A no 1.0 1.0 0.978 3e-76
P46297142 40S ribosomal protein S23 N/A no 1.0 1.0 0.978 7e-76
P49201142 40S ribosomal protein S23 yes no 1.0 1.0 0.964 8e-74
Q9SF35142 40S ribosomal protein S23 yes no 1.0 1.0 0.950 6e-72
Q9GRJ3143 40S ribosomal protein S23 N/A no 1.0 0.993 0.811 2e-63
Q86FP7143 40S ribosomal protein S23 N/A no 1.0 0.993 0.804 5e-63
Q8T3U2143 40S ribosomal protein S23 yes no 1.0 0.993 0.804 4e-62
P90707143 40S ribosomal protein S23 N/A no 1.0 0.993 0.790 4e-62
Q962Q7143 40S ribosomal protein S23 N/A no 1.0 0.993 0.790 5e-62
Q6EV23143 40S ribosomal protein S23 N/A no 1.0 0.993 0.790 5e-62
>sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1 Back     alignment and function desciption
 Score =  283 bits (723), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 139/142 (97%), Positives = 140/142 (98%)

Query: 1   MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKT GMGA RKLK+HRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 142
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

Euphorbia esula (taxid: 3993)
>sp|P46297|RS23_FRAAN 40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1 Back     alignment and function description
>sp|P49201|RS232_ARATH 40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2 Back     alignment and function description
>sp|Q9SF35|RS231_ARATH 40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2 Back     alignment and function description
>sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1 Back     alignment and function description
>sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1 Back     alignment and function description
>sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 OS=Drosophila melanogaster GN=RpS23 PE=2 SV=1 Back     alignment and function description
>sp|P90707|RS23_BRUMA 40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1 Back     alignment and function description
>sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1 Back     alignment and function description
>sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query142
212722730142 40S ribosomal protein S23 [Zea mays] gi| 1.0 1.0 0.978 7e-75
77999293142 unknown [Solanum tuberosum] 1.0 1.0 0.985 9e-75
296883301142 putative ribosomal S23 protein [Wolffia 1.0 1.0 0.978 2e-74
115440881142 Os01g0834500 [Oryza sativa Japonica Grou 1.0 1.0 0.971 2e-74
62287478142 RecName: Full=40S ribosomal protein S23 1.0 1.0 0.978 2e-74
449440067142 PREDICTED: 40S ribosomal protein S23-lik 1.0 1.0 0.978 2e-74
192910822142 40S ribosomal protein S23 [Elaeis guinee 1.0 1.0 0.978 3e-74
388521427142 unknown [Lotus japonicus] 1.0 1.0 0.978 3e-74
125572544 312 hypothetical protein OsJ_03983 [Oryza sa 1.0 0.455 0.971 3e-74
297741557189 unnamed protein product [Vitis vinifera] 1.0 0.751 0.971 4e-74
>gi|212722730|ref|NP_001131287.1| 40S ribosomal protein S23 [Zea mays] gi|242032479|ref|XP_002463634.1| hypothetical protein SORBIDRAFT_01g003410 [Sorghum bicolor] gi|242059153|ref|XP_002458722.1| hypothetical protein SORBIDRAFT_03g039010 [Sorghum bicolor] gi|242090801|ref|XP_002441233.1| hypothetical protein SORBIDRAFT_09g022840 [Sorghum bicolor] gi|194691088|gb|ACF79628.1| unknown [Zea mays] gi|194697612|gb|ACF82890.1| unknown [Zea mays] gi|194702740|gb|ACF85454.1| unknown [Zea mays] gi|195606082|gb|ACG24871.1| 40S ribosomal protein S23 [Zea mays] gi|195618728|gb|ACG31194.1| 40S ribosomal protein S23 [Zea mays] gi|195619636|gb|ACG31648.1| 40S ribosomal protein S23 [Zea mays] gi|195625318|gb|ACG34489.1| 40S ribosomal protein S23 [Zea mays] gi|195628702|gb|ACG36181.1| 40S ribosomal protein S23 [Zea mays] gi|195657679|gb|ACG48307.1| 40S ribosomal protein S23 [Zea mays] gi|238012290|gb|ACR37180.1| unknown [Zea mays] gi|241917488|gb|EER90632.1| hypothetical protein SORBIDRAFT_01g003410 [Sorghum bicolor] gi|241930697|gb|EES03842.1| hypothetical protein SORBIDRAFT_03g039010 [Sorghum bicolor] gi|241946518|gb|EES19663.1| hypothetical protein SORBIDRAFT_09g022840 [Sorghum bicolor] gi|413932622|gb|AFW67173.1| 40S ribosomal protein S23 [Zea mays] gi|413945649|gb|AFW78298.1| 40S ribosomal protein S23 [Zea mays] gi|413949614|gb|AFW82263.1| 40S ribosomal protein S23 [Zea mays] gi|414873623|tpg|DAA52180.1| TPA: hypothetical protein ZEAMMB73_525462 [Zea mays] gi|414879834|tpg|DAA56965.1| TPA: 40S ribosomal protein S23 [Zea mays] Back     alignment and taxonomy information
 Score =  284 bits (727), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 139/142 (97%), Positives = 141/142 (99%)

Query: 1   MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKTHRR QRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQL+KNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query: 121 VVKVSGVSLLALFKEKKEKPRS 142
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|77999293|gb|ABB16993.1| unknown [Solanum tuberosum] Back     alignment and taxonomy information
>gi|296883301|gb|ADH84008.1| putative ribosomal S23 protein [Wolffia arrhiza] Back     alignment and taxonomy information
>gi|115440881|ref|NP_001044720.1| Os01g0834500 [Oryza sativa Japonica Group] gi|115456215|ref|NP_001051708.1| Os03g0818400 [Oryza sativa Japonica Group] gi|297720551|ref|NP_001172637.1| Os01g0834601 [Oryza sativa Japonica Group] gi|357125752|ref|XP_003564554.1| PREDICTED: 40S ribosomal protein S23-like [Brachypodium distachyon] gi|357133327|ref|XP_003568277.1| PREDICTED: 40S ribosomal protein S23-like [Brachypodium distachyon] gi|313103637|pdb|3IZ6|L Chain L, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome gi|20805266|dbj|BAB92932.1| putative 40s ribosomal protein S23 [Oryza sativa Japonica Group] gi|20805267|dbj|BAB92933.1| putative 40s ribosomal protein S23 [Oryza sativa Japonica Group] gi|21671347|dbj|BAC02683.1| putative 40s ribosomal protein S23 [Oryza sativa Japonica Group] gi|21671348|dbj|BAC02684.1| putative 40s ribosomal protein S23 [Oryza sativa Japonica Group] gi|28876025|gb|AAO60034.1| 40S ribosomal protein S23 [Oryza sativa Japonica Group] gi|29124115|gb|AAO65856.1| 40S ribosomal protein S23 [Oryza sativa Japonica Group] gi|108711771|gb|ABF99566.1| 40S ribosomal protein S23, putative, expressed [Oryza sativa Japonica Group] gi|113534251|dbj|BAF06634.1| Os01g0834500 [Oryza sativa Japonica Group] gi|113550179|dbj|BAF13622.1| Os03g0818400 [Oryza sativa Japonica Group] gi|125528286|gb|EAY76400.1| hypothetical protein OsI_04329 [Oryza sativa Indica Group] gi|125546216|gb|EAY92355.1| hypothetical protein OsI_14082 [Oryza sativa Indica Group] gi|215697420|dbj|BAG91414.1| unnamed protein product [Oryza sativa Japonica Group] gi|215734943|dbj|BAG95665.1| unnamed protein product [Oryza sativa Japonica Group] gi|255673847|dbj|BAH91367.1| Os01g0834601 [Oryza sativa Japonica Group] gi|326501134|dbj|BAJ98798.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326506086|dbj|BAJ91282.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|62287478|sp|Q9M5Z9.1|RS23_EUPES RecName: Full=40S ribosomal protein S23 gi|6716785|gb|AAF26742.1|AF220539_1 40s ribosomal protein S23 [Euphorbia esula] Back     alignment and taxonomy information
>gi|449440067|ref|XP_004137806.1| PREDICTED: 40S ribosomal protein S23-like [Cucumis sativus] gi|449452122|ref|XP_004143809.1| PREDICTED: 40S ribosomal protein S23-like [Cucumis sativus] gi|449463681|ref|XP_004149560.1| PREDICTED: 40S ribosomal protein S23-like [Cucumis sativus] gi|449483351|ref|XP_004156564.1| PREDICTED: 40S ribosomal protein S23-like [Cucumis sativus] gi|449508653|ref|XP_004163373.1| PREDICTED: 40S ribosomal protein S23-like [Cucumis sativus] gi|449521770|ref|XP_004167902.1| PREDICTED: 40S ribosomal protein S23-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|192910822|gb|ACF06519.1| 40S ribosomal protein S23 [Elaeis guineensis] Back     alignment and taxonomy information
>gi|388521427|gb|AFK48775.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|125572544|gb|EAZ14059.1| hypothetical protein OsJ_03983 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|297741557|emb|CBI32689.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query142
TAIR|locus:2151301142 AT5G02960 [Arabidopsis thalian 1.0 1.0 0.964 1.4e-69
TAIR|locus:2074954142 AT3G09680 [Arabidopsis thalian 1.0 1.0 0.950 1.2e-67
FB|FBgn0033912143 RpS23 "Ribosomal protein S23" 1.0 0.993 0.804 4.5e-59
WB|WBGene00004492143 rps-23 [Caenorhabditis elegans 1.0 0.993 0.769 1.5e-58
UNIPROTKB|E1BEQ3143 E1BEQ3 "Uncharacterized protei 1.0 0.993 0.790 1.9e-58
UNIPROTKB|Q3T199143 RPS23 "40S ribosomal protein S 1.0 0.993 0.790 1.9e-58
UNIPROTKB|J9NZX6143 RPS23 "Uncharacterized protein 1.0 0.993 0.790 1.9e-58
UNIPROTKB|P62266143 RPS23 "40S ribosomal protein S 1.0 0.993 0.790 1.9e-58
UNIPROTKB|F2Z512143 RPS23 "40S ribosomal protein S 1.0 0.993 0.790 1.9e-58
MGI|MGI:1913725143 Rps23 "ribosomal protein S23" 1.0 0.993 0.790 1.9e-58
TAIR|locus:2151301 AT5G02960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 137/142 (96%), Positives = 137/142 (96%)

Query:     1 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
             MGKTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct:     1 MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60

Query:    61 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
             PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct:    61 PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120

Query:   121 VVKVSGVSLLALFKEKKEKPRS 142
             VVKVSGVSLLALFKEKKEKPRS
Sbjct:   121 VVKVSGVSLLALFKEKKEKPRS 142
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0015935 "small ribosomal subunit" evidence=IEA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
TAIR|locus:2074954 AT3G09680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0033912 RpS23 "Ribosomal protein S23" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00004492 rps-23 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E1BEQ3 E1BEQ3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T199 RPS23 "40S ribosomal protein S23" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9NZX6 RPS23 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P62266 RPS23 "40S ribosomal protein S23" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z512 RPS23 "40S ribosomal protein S23" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1913725 Rps23 "ribosomal protein S23" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B0R8D1RS12_HALS3No assigned EC number0.55390.96470.9647yesno
Q8ZYQ4RS12_PYRAENo assigned EC number0.57660.95070.9183yesno
P79057RS23_SCHPONo assigned EC number0.74121.00.9930yesno
Q6EV23RS23_PAPDANo assigned EC number0.79021.00.9930N/Ano
Q90YQ1RS23_ICTPUNo assigned EC number0.79021.00.9930N/Ano
P49201RS232_ARATHNo assigned EC number0.96471.01.0yesno
Q5UZR8RS12_HALMANo assigned EC number0.55970.92950.9295yesno
Q6L0R4RS12_PICTONo assigned EC number0.56610.94360.9436yesno
Q19877RS23_CAEELNo assigned EC number0.76921.00.9930yesno
Q3IUM8RS12_NATPDNo assigned EC number0.55970.92950.9295yesno
P11524RS12_SULACNo assigned EC number0.54340.95770.9251yesno
Q8TXJ2RS12_METKANo assigned EC number0.59120.95070.9183yesno
P90707RS23_BRUMANo assigned EC number0.79021.00.9930N/Ano
Q9DFR4RS23_GILMINo assigned EC number0.74121.00.9930N/Ano
P46297RS23_FRAANNo assigned EC number0.97881.01.0N/Ano
Q8SR65RS23_ENCCUNo assigned EC number0.58820.95070.9642yesno
P62266RS23_HUMANNo assigned EC number0.79021.00.9930yesno
P62267RS23_MOUSENo assigned EC number0.79021.00.9930yesno
Q873W8RS23_ASPFUNo assigned EC number0.78160.99290.9724yesno
Q97CD8RS12_THEVONo assigned EC number0.57350.94360.9436yesno
Q9GRJ3RS23_LUMRUNo assigned EC number0.81111.00.9930N/Ano
Q55A19RS23_DICDINo assigned EC number0.70210.98590.9790yesno
Q86FP7RS23_DERVANo assigned EC number0.80411.00.9930N/Ano
P0CX29RS23A_YEASTNo assigned EC number0.77460.99290.9724yesno
P62268RS23_RATNo assigned EC number0.79021.00.9930yesno
P0CX00RS12_HALSANo assigned EC number0.55390.96470.9647yesno
Q9SF35RS231_ARATHNo assigned EC number0.95071.01.0yesno
Q9M5Z9RS23_EUPESNo assigned EC number0.97881.01.0N/Ano
Q8T3U2RS23_DROMENo assigned EC number0.80411.00.9930yesno
Q8I7D5RS23_CIOINNo assigned EC number0.76921.00.9930yesno
Q18EX9RS12_HALWDNo assigned EC number0.56710.92950.9295yesno
P62298RS23_CHILANo assigned EC number0.79021.00.9930N/Ano
Q9HE74RS23_NEUCRNo assigned EC number0.77460.99290.9724N/Ano
Q6YIA3RS23_SACBANo assigned EC number0.77460.99290.9724N/Ano
P06147RS12_TETTHNo assigned EC number0.71940.97880.9788N/Ano
A3MXZ4RS12_PYRCJNo assigned EC number0.58390.95070.9183yesno
Q962Q7RS23_SPOFRNo assigned EC number0.79021.00.9930N/Ano
P0CY40RS23B_NAUCCNo assigned EC number0.77460.99290.9724yesno
A0RUR2RS12_CENSYNo assigned EC number0.60140.95770.9379yesno
Q6SA96RS23_PIGNo assigned EC number0.78321.00.9930yesno
A8A929RS12_IGNH4No assigned EC number0.55470.95070.9183yesno
Q3T199RS23_BOVINNo assigned EC number0.79021.00.9930yesno
P0CY39RS23A_NAUCCNo assigned EC number0.77460.99290.9724yesno
Q6FLA8RS23_CANGANo assigned EC number0.77460.99290.9724yesno
Q9HLY2RS12_THEACNo assigned EC number0.57350.94360.9436yesno
O28387RS12_ARCFUNo assigned EC number0.55470.95070.9507yesno
P0CX30RS23B_YEASTNo assigned EC number0.77460.99290.9724yesno
A3DMP8RS12_STAMFNo assigned EC number0.56200.95070.9183yesno
Q2NEK8RS12_METSTNo assigned EC number0.56930.95070.9574yesno
A2BN38RS12_HYPBUNo assigned EC number0.53620.95770.9251yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
Sb03g039010.1
annotation not avaliable (142 aa)
(Sorghum bicolor)
Predicted Functional Partners:
Sb03g009210.1
annotation not avaliable (202 aa)
•  •••• 0.988
Sb10g006620.1
hypothetical protein (143 aa)
   •••• 0.858
Sb05g001680.1
hypothetical protein (149 aa)
•  •••• 0.855
Sb08g001870.1
hypothetical protein (150 aa)
•  •••• 0.853
Sb07g004290.1
hypothetical protein (229 aa)
   •••• 0.848
Sb02g038990.1
hypothetical protein (232 aa)
   •••• 0.842
rps7-A
RecName- Full=30S ribosomal protein S7, chloroplastic;; One of the primary rRNA binding protein [...] (156 aa)
•   • • 0.837
Sb03g006610.1
hypothetical protein (158 aa)
   • •• 0.827
Sb01g041040.1
hypothetical protein (127 aa)
•  •••• 0.800
Sb10g002240.1
hypothetical protein (129 aa)
•  •••• 0.799

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query142
PTZ00067143 PTZ00067, PTZ00067, 40S ribosomal S23; Provisional 5e-89
cd03367115 cd03367, Ribosomal_S23, S12-like family, 40S ribos 1e-72
PRK04211145 PRK04211, rps12P, 30S ribosomal protein S12P; Revi 1e-59
TIGR00982139 TIGR00982, S23_S12_E_A, ribosomal protein S23 (S12 7e-50
COG0048129 COG0048, RpsL, Ribosomal protein S12 [Translation, 5e-42
pfam00164122 pfam00164, Ribosomal_S12, Ribosomal protein S12 1e-40
cd0031995 cd00319, Ribosomal_S12_like, Ribosomal protein S12 5e-37
cd03368108 cd03368, Ribosomal_S12, S12-like family, 30S ribos 7e-12
CHL00051123 CHL00051, rps12, ribosomal protein S12 3e-10
PRK05163124 PRK05163, rpsL, 30S ribosomal protein S12; Validat 1e-08
TIGR00981124 TIGR00981, rpsL_bact, ribosomal protein S12, bacte 6e-08
PTZ00115290 PTZ00115, PTZ00115, 40S ribosomal protein S12; Pro 0.002
>gnl|CDD|185422 PTZ00067, PTZ00067, 40S ribosomal S23; Provisional Back     alignment and domain information 
 Score =  255 bits (652), Expect = 5e-89
 Identities = 114/143 (79%), Positives = 126/143 (88%), Gaps = 1/143 (0%)

Query: 1   MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
           MGK RG+ A RKL+ HRR  RWADK YKK+HLG  +K  PF G+SHAKGIV+EKIGIEAK
Sbjct: 1   MGKPRGLRAARKLRRHRRVNRWADKEYKKAHLGTRYKANPFGGASHAKGIVVEKIGIEAK 60

Query: 60  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 119
           QPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+I ENDEVL++GFGR GHAVGDIPGVRF
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFINENDEVLVSGFGRSGHAVGDIPGVRF 120

Query: 120 KVVKVSGVSLLALFKEKKEKPRS 142
           KVVKV+GVSLLAL+K KKEKPR+
Sbjct: 121 KVVKVAGVSLLALYKGKKEKPRN 143

Length = 143
>gnl|CDD|239465 cd03367, Ribosomal_S23, S12-like family, 40S ribosomal protein S23 subfamily; S23 is located at the interface of the large and small ribosomal subunits of eukaryotes, adjacent to the decoding center Back     alignment and domain information
>gnl|CDD|235257 PRK04211, rps12P, 30S ribosomal protein S12P; Reviewed Back     alignment and domain information
>gnl|CDD|130055 TIGR00982, S23_S12_E_A, ribosomal protein S23 (S12) Back     alignment and domain information
>gnl|CDD|223126 COG0048, RpsL, Ribosomal protein S12 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|201049 pfam00164, Ribosomal_S12, Ribosomal protein S12 Back     alignment and domain information
>gnl|CDD|238196 cd00319, Ribosomal_S12_like, Ribosomal protein S12-like family; composed of prokaryotic 30S ribosomal protein S12, eukaryotic 40S ribosomal protein S23 and similar proteins Back     alignment and domain information
>gnl|CDD|239466 cd03368, Ribosomal_S12, S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit interactions Back     alignment and domain information
>gnl|CDD|176992 CHL00051, rps12, ribosomal protein S12 Back     alignment and domain information
>gnl|CDD|235355 PRK05163, rpsL, 30S ribosomal protein S12; Validated Back     alignment and domain information
>gnl|CDD|130054 TIGR00981, rpsL_bact, ribosomal protein S12, bacterial/organelle Back     alignment and domain information
>gnl|CDD|240276 PTZ00115, PTZ00115, 40S ribosomal protein S12; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 142
PTZ00067143 40S ribosomal S23; Provisional 100.0
PRK04211145 rps12P 30S ribosomal protein S12P; Reviewed 100.0
TIGR00982139 S23_S12_E_A ribosomal protein S23 (S12). This mode 100.0
KOG1749143 consensus 40S ribosomal protein S23 [Translation, 100.0
cd03367115 Ribosomal_S23 S12-like family, 40S ribosomal prote 100.0
COG0048129 RpsL Ribosomal protein S12 [Translation, ribosomal 100.0
cd0031995 Ribosomal_S12_like Ribosomal protein S12-like fami 100.0
PF00164122 Ribosom_S12_S23: Ribosomal protein S12/S23; InterP 100.0
cd03368108 Ribosomal_S12 S12-like family, 30S ribosomal prote 100.0
PRK05163124 rpsL 30S ribosomal protein S12; Validated 100.0
CHL00051123 rps12 ribosomal protein S12 100.0
TIGR00981124 rpsL_bact ribosomal protein S12, bacterial/organel 100.0
PTZ00115290 40S ribosomal protein S12; Provisional 100.0
KOG1750139 consensus Mitochondrial/chloroplast ribosomal prot 100.0
TIGR0000868 infA translation initiation factor IF-1. This fami 93.75
COG036175 InfA Translation initiation factor 1 (IF-1) [Trans 92.37
PRK1244287 translation initiation factor IF-1; Reviewed 84.2
smart0065283 eIF1a eukaryotic translation initiation factor 1A. 81.7
>PTZ00067 40S ribosomal S23; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4e-74  Score=445.95  Aligned_cols=142  Identities=80%  Similarity=1.308  Sum_probs=140.2

Q ss_pred             CCCCCccchhHHHHhhhhhccccchhhhhhccCCccc-CCCCCCCccceeEEeeeeeccCCCCccccceeEEEEeecCcE
Q 032383            1 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKK   79 (142)
Q Consensus         1 ~~k~~Gl~~~rkl~~~r~~~rw~d~~ykk~~lg~~~k-~pl~g~pq~kGivl~~~~~~pKkPNSA~RK~~rV~L~kngk~   79 (142)
                      ||+|+||||||||+++|+++||+|++|+++|||+.++ |||+++||++|||++++++||||||||+||||+|||++||++
T Consensus         1 m~~~~Gl~aarkl~~~r~~~rw~d~~y~k~~lg~~~k~~pl~g~pq~kGivl~~~~~~pKkPNSA~RK~~rV~L~kngk~   80 (143)
T PTZ00067          1 MGKPRGLRAARKLRRHRRVNRWADKEYKKAHLGTRYKANPFGGASHAKGIVVEKIGIEAKQPNSAIRKCVRVQLIKNGKK   80 (143)
T ss_pred             CCCcchhHHHHHHHHHHHHhhhhhHHHHHHhcCCccccCcccCCCccceEEEEEEeecCCCCChhhceEEEEEEccCCcE
Confidence            8999999999999999999999999999999999998 999999999999999999999999999999999999889999


Q ss_pred             EEEEcCCCCcccCccccCeEEEeeccCCCCccCCCCCceEEEEEecCchhhHhhhhcccCCCC
Q 032383           80 IAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  142 (142)
Q Consensus        80 vtA~IPg~G~l~~lqeh~~VLV~G~G~~gg~v~DlPGVrykvVrv~gv~l~~l~~gkk~kp~~  142 (142)
                      ||||||||||||||||||+|||+|||++|++++|||||+|+|||||||||+|||+||||||++
T Consensus        81 vtAyiPg~G~lh~lqEh~~VLV~G~Gr~g~~v~DlPGVrykvVrV~~vsL~~l~kgkkekp~r  143 (143)
T PTZ00067         81 ITAFVPNDGCLNFINENDEVLVSGFGRSGHAVGDIPGVRFKVVKVAGVSLLALYKGKKEKPRN  143 (143)
T ss_pred             EEEEeCCCCcccccccCCEEEEEecCcCCCccCCCCceEEEEEEECCEeHHHHHhcccccCCC
Confidence            999999999999999999999999999999999999999999999999999999999999985

>PRK04211 rps12P 30S ribosomal protein S12P; Reviewed Back     alignment and domain information
>TIGR00982 S23_S12_E_A ribosomal protein S23 (S12) Back     alignment and domain information
>KOG1749 consensus 40S ribosomal protein S23 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd03367 Ribosomal_S23 S12-like family, 40S ribosomal protein S23 subfamily; S23 is located at the interface of the large and small ribosomal subunits of eukaryotes, adjacent to the decoding center Back     alignment and domain information
>COG0048 RpsL Ribosomal protein S12 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00319 Ribosomal_S12_like Ribosomal protein S12-like family; composed of prokaryotic 30S ribosomal protein S12, eukaryotic 40S ribosomal protein S23 and similar proteins Back     alignment and domain information
>PF00164 Ribosom_S12_S23: Ribosomal protein S12/S23; InterPro: IPR006032 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>cd03368 Ribosomal_S12 S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit interactions Back     alignment and domain information
>PRK05163 rpsL 30S ribosomal protein S12; Validated Back     alignment and domain information
>CHL00051 rps12 ribosomal protein S12 Back     alignment and domain information
>TIGR00981 rpsL_bact ribosomal protein S12, bacterial/organelle Back     alignment and domain information
>PTZ00115 40S ribosomal protein S12; Provisional Back     alignment and domain information
>KOG1750 consensus Mitochondrial/chloroplast ribosomal protein S12 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00008 infA translation initiation factor IF-1 Back     alignment and domain information
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12442 translation initiation factor IF-1; Reviewed Back     alignment and domain information
>smart00652 eIF1a eukaryotic translation initiation factor 1A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query142
3iz6_L142 Localization Of The Small Subunit Ribosomal Protein 3e-77
2zkq_l143 Structure Of A Mammalian Ribosomal 40s Subunit With 1e-62
3izb_L145 Localization Of The Small Subunit Ribosomal Protein 1e-59
3j2k_X144 Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associ 1e-59
3j0l_L141 Core Of Mammalian 80s Pre-Ribosome In Complex With 1e-54
2xzm_L142 Crystal Structure Of The Eukaryotic 40s Ribosomal S 1e-54
3zey_S143 High-resolution Cryo-electron Microscopy Structure 2e-54
1s1h_L118 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 9e-51
3j20_N147 Promiscuous Behavior Of Proteins In Archaeal Riboso 6e-33
3bbn_L123 Homology Model For The Spinach Chloroplast 30s Subu 2e-07
4g5k_O128 Crystal Structure Of The 70s Ribosome With Tetracyc 3e-07
2f4v_L132 30s Ribosome + Designer Antibiotic Length = 132 3e-07
1i94_L131 Crystal Structures Of The Small Ribosomal Subunit W 3e-07
1pn7_O124 Coordinates Of S12, L11 Proteins And P-Trna, From T 3e-07
3fic_L125 T. Thermophilus 70s Ribosome In Complex With Mrna, 3e-07
1fjg_L135 Structure Of The Thermus Thermophilus 30s Ribosomal 3e-07
3d5a_L134 Structural Basis For Translation Termination On The 3e-07
4dr1_L135 Crystal Structure Of The Apo 30s Ribosomal Subunit 3e-06
1zn1_L97 Coordinates Of Rrf Fitted Into Cryo-Em Map Of The 7 3e-05
2gy9_L101 Structure Of The 30s Subunit Of A Pre-Translocation 3e-05
1vs5_L124 Crystal Structure Of The Bacterial Ribosome From Es 4e-05
1p6g_L123 Real Space Refined Coordinates Of The 30s Subunit F 4e-05
>pdb|3IZ6|L Chain L, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 142 Back     alignment and structure 
Iteration: 1

 Score =  283 bits (723), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 138/142 (97%), Positives = 141/142 (99%)
Query: 1   MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           MGKTRGMGAGRKLKTHRR QRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 1   MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSAIRKCARVQL+KNGKKIAAFVPNDGCLN+IEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 61  PNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
Query: 121 VVKVSGVSLLALFKEKKEKPRS 142
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 VVKVSGVSLLALFKEKKEKPRS 142
>pdb|2ZKQ|LL Chain l, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 143 Back     alignment and structure
>pdb|3IZB|L Chain L, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 145 Back     alignment and structure
>pdb|3J2K|X Chain X, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated Termination Complex Length = 144 Back     alignment and structure
>pdb|3J0L|L Chain L, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1 Length = 141 Back     alignment and structure
>pdb|2XZM|L Chain L, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 142 Back     alignment and structure
>pdb|3ZEY|S Chain S, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 143 Back     alignment and structure
>pdb|1S1H|L Chain L, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i. Length = 118 Back     alignment and structure
>pdb|3J20|N Chain N, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 147 Back     alignment and structure
>pdb|3BBN|L Chain L, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 123 Back     alignment and structure
>pdb|4G5K|O Chain O, Crystal Structure Of The 70s Ribosome With Tetracycline. This Entry Contains The 30s Subunit Of Molecule A. Length = 128 Back     alignment and structure
>pdb|2F4V|L Chain L, 30s Ribosome + Designer Antibiotic Length = 132 Back     alignment and structure
>pdb|1I94|L Chain L, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 131 Back     alignment and structure
>pdb|1PN7|O Chain O, Coordinates Of S12, L11 Proteins And P-Trna, From The 70s X- Ray Structure Aligned To The 70s Cryo-Em Map Of E.Coli Ribosome Length = 124 Back     alignment and structure
>pdb|3FIC|L Chain L, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 125 Back     alignment and structure
>pdb|1FJG|L Chain L, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 135 Back     alignment and structure
>pdb|3D5A|L Chain L, Structural Basis For Translation Termination On The 70s Ribosome. This File Contains The 30s Subunit, Release Factor 1 (Rf1), Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. Length = 134 Back     alignment and structure
>pdb|4DR1|L Chain L, Crystal Structure Of The Apo 30s Ribosomal Subunit From Thermus Thermophilus (hb8) Length = 135 Back     alignment and structure
>pdb|1ZN1|L Chain L, Coordinates Of Rrf Fitted Into Cryo-Em Map Of The 70s Post- Termination Complex Length = 97 Back     alignment and structure
>pdb|2GY9|L Chain L, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 101 Back     alignment and structure
>pdb|1VS5|L Chain L, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 124 Back     alignment and structure
>pdb|1P6G|L Chain L, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 123 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query142
2xzm_L142 40S ribosomal protein S12; ribosome, translation; 4e-49
3u5c_X145 RP37, S28, YS14, 40S ribosomal protein S23-A; tran 2e-46
2vqe_L135 30S ribosomal protein S12, 30S ribosomal protein S 6e-08
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L 3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L* Length = 142 Back     alignment and structure
 Score =  153 bits (388), Expect = 4e-49
 Identities = 100/139 (71%), Positives = 115/139 (82%)

Query: 1   MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 60
           +GK RG+ AGRKL  HR+ QRWAD  + K  LG+ W+ PF G+SHAKG+V EKIGIE+KQ
Sbjct: 3   VGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIGIESKQ 62

Query: 61  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 120
           PNSA+RKC RV L KN KKIAAFVP DGCLN++ ENDEVL+AG GR+GHAVGDIPGVRFK
Sbjct: 63  PNSAVRKCVRVLLRKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFK 122

Query: 121 VVKVSGVSLLALFKEKKEK 139
           VV V G+SLLALFK KKEK
Sbjct: 123 VVCVKGISLLALFKGKKEK 141
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L Length = 145 Back     alignment and structure
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ... Length = 135 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query142
3u5c_X145 RP37, S28, YS14, 40S ribosomal protein S23-A; tran 100.0
2xzm_L142 40S ribosomal protein S12; ribosome, translation; 100.0
3j20_N147 30S ribosomal protein S12P; archaea, archaeal, KIN 100.0
2vqe_L135 30S ribosomal protein S12, 30S ribosomal protein S 100.0
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3j2k_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L Back     alignment and structure
Probab=100.00  E-value=3.9e-76  Score=456.91  Aligned_cols=142  Identities=77%  Similarity=1.262  Sum_probs=140.2

Q ss_pred             CCCCCccchhHHHHhhhhhccccchhhhhhccCCccc-CCCCCCCccceeEEeeeeeccCCCCccccceeEEEEeecCcE
Q 032383            1 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKK   79 (142)
Q Consensus         1 ~~k~~Gl~~~rkl~~~r~~~rw~d~~ykk~~lg~~~k-~pl~g~pq~kGivl~~~~~~pKkPNSA~RK~~rV~L~kngk~   79 (142)
                      ||+|+||||||||+++|+++||+|++|+++|||++++ |||+++||++||||+++++||||||||+||||||||++||++
T Consensus         3 ~~k~~Gl~aarkl~~~r~~~rw~dk~ykk~~lg~~~K~~~l~g~pq~kGivl~~~~~~pKkPNSA~RK~arV~L~kngk~   82 (145)
T 3u5c_X            3 KGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKK   82 (145)
T ss_dssp             CSSCCCSSCHHHHHHHHHHHHTTSHHHHHHHHTHHHHSSSSCSSSEEEEEEEEEEBCBCCTTCCCBCCEEEEEETTTCCE
T ss_pred             CCccCcHHHHHHHHHHHHHhhhhhhHHHHHhcCcccccCccCCCCccCeEEEEEeecccCCCCccceeEEEEEEccCCCE
Confidence            6899999999999999999999999999999999988 999999999999999999999999999999999999889999


Q ss_pred             EEEEcCCCCcccCccccCeEEEeeccCCCCccCCCCCceEEEEEecCchhhHhhhhcccCCCC
Q 032383           80 IAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  142 (142)
Q Consensus        80 vtA~IPg~G~l~~lqeh~~VLV~G~G~~gg~v~DlPGVrykvVrv~gv~l~~l~~gkk~kp~~  142 (142)
                      ||||||||||||||||||+|||+|||++||+++|||||+|+|||||||||+|||+||||||+|
T Consensus        83 vtAyIPg~G~l~~lqEh~~VLV~G~G~~Gg~v~DlPGVrykvVrv~~vsl~al~kgkkekp~~  145 (145)
T 3u5c_X           83 VTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS  145 (145)
T ss_dssp             EEEECCSSSCGGGCCTTCEEEEECCSSSSSCCSSSTTCCEEEEESTTTCHHHHHHTSCCCCCC
T ss_pred             EEEEeCCCCccccCCcCCEEEEEeccccCCccCCCCceeEEEEEECCeeHHHHHhccccCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999986
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L 3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L* Back     alignment and structure
>3j20_N 30S ribosomal protein S12P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 142
d2uubl1118 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus 2e-19
>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus thermophilus [TaxId: 274]} Length = 118 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Ribosomal protein S12
species: Thermus thermophilus [TaxId: 274]

 Score = 75.9 bits (187), Expect = 2e-19
 Identities = 34/104 (32%), Positives = 61/104 (58%), Gaps = 11/104 (10%)

Query: 39  PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE 98
              G+   +G+      +  K+PNSA+RK A+V+ + +G ++ A++P +G  + ++E+  
Sbjct: 22  ALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVR-LTSGYEVTAYIPGEG--HNLQEHSV 78

Query: 99  VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
           VLI     +G  V D+PGVR+ +V+  GV   A  K++K+  RS
Sbjct: 79  VLI-----RGGRVKDLPGVRYHIVR--GVYDAAGVKDRKKS-RS 114

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query142
d2uubl1118 Ribosomal protein S12 {Thermus thermophilus [TaxId 100.0
d1ah9a_71 Translational initiation factor 1, IF1 {Escherichi 87.75
>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Ribosomal protein S12
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.2e-46  Score=280.63  Aligned_cols=93  Identities=35%  Similarity=0.647  Sum_probs=90.1

Q ss_pred             CCCCCCCccceeEEeeeeeccCCCCccccceeEEEEeecCcEEEEEcCCCCcccCccccCeEEEeeccCCCCccCCCCCc
Q 032383           38 KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGV  117 (142)
Q Consensus        38 ~pl~g~pq~kGivl~~~~~~pKkPNSA~RK~~rV~L~kngk~vtA~IPg~G~l~~lqeh~~VLV~G~G~~gg~v~DlPGV  117 (142)
                      ++|+++||++|||+++++++|||||||+||||+|+| +||++||||||||||  ||||||+|||+|     |+++|||||
T Consensus        21 ~aL~~~PqkkGvc~kv~~~~PKKPNSA~RKvarVrL-sng~~v~AyIPG~Gh--nlqEHs~VLvrG-----Grv~DlPGV   92 (118)
T d2uubl1          21 PALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRL-TSGYEVTAYIPGEGH--NLQEHSVVLIRG-----GRVKDLPGV   92 (118)
T ss_dssp             CCTTTCSCEEEEEEEEEEECCCTTCCSCEEEEEEEE-TTSCEEEEECCSSCC--CCCTTCEEEECC-----CCCTTSTTC
T ss_pred             cccccCCccceEEEEEEEeccCCCcceeeeEEEEEe-cCCeEEEEEcCCCCc--CcccCCEEEEeC-----CccccCCCc
Confidence            789999999999999999999999999999999999 899999999999997  999999999999     799999999


Q ss_pred             eEEEEEecCchhhHhhhhcccCC
Q 032383          118 RFKVVKVSGVSLLALFKEKKEKP  140 (142)
Q Consensus       118 rykvVrv~gv~l~~l~~gkk~kp  140 (142)
                      +|+|||  |++|++.+.++++..
T Consensus        93 ry~vvr--G~~D~~~v~~Rk~~R  113 (118)
T d2uubl1          93 RYHIVR--GVYDAAGVKDRKKSR  113 (118)
T ss_dssp             CEEBCT--TSTTCCCCTTCCSST
T ss_pred             EEEEEe--eeecccccccccccc
Confidence            999999  999999999998874
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure