Citrus Sinensis ID: 032387

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTEA
Secondary Structure (PSIPRED)
cEEEEcccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHccHHHHcccEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHHHHccccEEEEcccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHcccccHEcccEEEEEEcccEEEEEEEcHHHcccHHHHHHHHHHHHHHHccccEEEEEEcccc
Coil and Loop (DISEMBL)
mqidvpgnrkavVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRrilrppkkgsavqrprsrtLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFldpkernnteykLDTFAAVYRKLsgkdvvfdfpvtea
Flexible Loop (DISEMBL)
mqidvpgnrkavvihipyrlrkayRKIHTKLVrelekkfsgkdviliatrrilrppkkgsavqrprsrtltsvheamledvvlpaeivgkriryrldgskimkvfldpkernnteyKLDTFAAVYRKLSGKDVVFDFPVTEA
Low Complexity Region (SEG)
MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTEA
Disordered region (IsUnstruct)
*********KAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL*******************VHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFP****
Disordered Region (DISOPRED)
MQID**GNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATR******************TLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVT**
Disordered Region (DISEMBL)
MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRP***************TSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTEA
Disordered Region (DISPRO)
MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPP*********RSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTE*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTEA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
Q9C514	191	40S ribosomal protein S7-	yes	no	1.0	0.743	0.809	6e-66
Q9ZNS1	190	40S ribosomal protein S7	N/A	no	0.992	0.742	0.829	3e-65
Q8LJU5	192	40S ribosomal protein S7	no	no	1.0	0.739	0.788	2e-64
Q9XET4	192	40S ribosomal protein S7	N/A	no	1.0	0.739	0.781	3e-63
Q9M885	191	40S ribosomal protein S7-	no	no	1.0	0.743	0.788	1e-62
Q8LD03	190	40S ribosomal protein S7-	no	no	0.978	0.731	0.791	3e-62
Q9XH45	191	40S ribosomal protein S7	N/A	no	0.992	0.738	0.773	4e-62
Q949H0	191	40S ribosomal protein S7	N/A	no	0.992	0.738	0.753	2e-60
Q90YR7	194	40S ribosomal protein S7	N/A	no	0.964	0.706	0.588	5e-42
P62084	194	40S ribosomal protein S7	yes	no	0.964	0.706	0.574	1e-41

>sp|Q9C514|RS71_ARATH 40S ribosomal protein S7-1 OS=Arabidopsis thaliana GN=RPS7A PE=2 SV=1

 Score =  248 bits (634), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 115/142 (80%), Positives = 136/142 (95%)

Query: 1   MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
           +Q+D+ G RKA+V+++PYRLRKAYRKIH +LVRELEKKFSGKDVILIATRRI+RPPKKGS
Sbjct: 50  VQVDISGGRKAIVVNVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGS 109

Query: 61  AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
           A +RPR+RTLTSVHEA+L+DVVLPAEIVGKR RYRLDG+KIMKVFLDPKERNNTEYK++ 
Sbjct: 110 AAKRPRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEA 169

Query: 121 FAAVYRKLSGKDVVFDFPVTEA 142
           F+AVY+KL+GKDVVF+FP+TEA
Sbjct: 170 FSAVYKKLTGKDVVFEFPITEA 191

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZNS1|RS7_AVIMR 40S ribosomal protein S7 OS=Avicennia marina GN=RPS7 PE=2 SV=1

 Score =  246 bits (628), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 117/141 (82%), Positives = 134/141 (95%)

Query: 1   MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
           +QIDV G +KAVVIH+PYRLRK++RKIH +LVRELEKKFSGK+V+LIATRRILRPPKKGS
Sbjct: 50  LQIDVSGGKKAVVIHVPYRLRKSFRKIHPRLVRELEKKFSGKEVVLIATRRILRPPKKGS 109

Query: 61  AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
           AVQRPRSRTLT+VH+AMLED+V PAEIVGKR+RYRLDGSKIMKVFLDPK +N+TE KL+T
Sbjct: 110 AVQRPRSRTLTAVHDAMLEDIVYPAEIVGKRVRYRLDGSKIMKVFLDPKAKNDTENKLET 169

Query: 121 FAAVYRKLSGKDVVFDFPVTE 141
           FA VYRKLSGKDVVF+FP+TE
Sbjct: 170 FAGVYRKLSGKDVVFEFPLTE 190

Avicennia marina (taxid: 82927)

>sp|Q8LJU5|RS7_ORYSJ 40S ribosomal protein S7 OS=Oryza sativa subsp. japonica GN=RPS7 PE=2 SV=2

 Score =  244 bits (622), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 112/142 (78%), Positives = 134/142 (94%)

Query: 1   MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
           +Q+D+PGNRKAV+I++PYRLRKAY+KIH +LVRELEKKFSGKDV+L+ATRRI+RPPKKGS
Sbjct: 50  VQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGS 109

Query: 61  AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
           AV RPR+RTLT+VH+ +LEDVV PAEIVGKR+RY LDG KIMK+FLDPKERNNTEYKLDT
Sbjct: 110 AVVRPRTRTLTAVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDT 169

Query: 121 FAAVYRKLSGKDVVFDFPVTEA 142
           F++VYR+L GKDVVFD+P+TE 
Sbjct: 170 FSSVYRRLCGKDVVFDYPMTET 191

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9XET4|RS7_SECCE 40S ribosomal protein S7 OS=Secale cereale GN=RPS7 PE=2 SV=1

 Score =  239 bits (611), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 111/142 (78%), Positives = 130/142 (91%)

Query: 1   MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
            Q+DV GNRKAVVIH+PYRLRK +RKIH +LVRELEKKFSGKDV+++ATRRI+RPPKKGS
Sbjct: 50  FQMDVAGNRKAVVIHVPYRLRKNFRKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGS 109

Query: 61  AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
           AV RPR+RTLT+VH+ +LEDVV PAEIVGKR+RYRLDGSKI+K+FLDP ERNNTEYKLDT
Sbjct: 110 AVVRPRTRTLTAVHDGLLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPMERNNTEYKLDT 169

Query: 121 FAAVYRKLSGKDVVFDFPVTEA 142
           F AVYR+L GKDVV+++PV E 
Sbjct: 170 FTAVYRRLCGKDVVYEYPVAET 191

Secale cereale (taxid: 4550)

>sp|Q9M885|RS72_ARATH 40S ribosomal protein S7-2 OS=Arabidopsis thaliana GN=RPS7B PE=2 SV=1

 Score =  238 bits (606), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 112/142 (78%), Positives = 130/142 (91%)

Query: 1   MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
           +Q+D+ GNRKAVVI++P+RLRKA+RKIH +LVRELEKKFSGKDVI +ATRRI+RPPKKGS
Sbjct: 50  VQMDISGNRKAVVIYVPFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGS 109

Query: 61  AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
           AVQRPR+RTLTSVHEAMLEDV  PAEIVGKR RYRLDG+KIMKVFLD K +N+TEYKL+T
Sbjct: 110 AVQRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLET 169

Query: 121 FAAVYRKLSGKDVVFDFPVTEA 142
              VYRKL+GKDVVF++PV EA
Sbjct: 170 MVGVYRKLTGKDVVFEYPVIEA 191

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LD03|RS73_ARATH 40S ribosomal protein S7-3 OS=Arabidopsis thaliana GN=RPS7C PE=2 SV=2

 Score =  236 bits (602), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 110/139 (79%), Positives = 127/139 (91%)

Query: 1   MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
           + +D+ GNRKAVVI++P+RLRKA+RKIH +LVRELEKKFSGKDVI + TRRI+RPPKKG+
Sbjct: 50  VHMDISGNRKAVVIYVPFRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGA 109

Query: 61  AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
           AVQRPR+RTLTSVHEAMLEDV  PAEIVGKR RYRLDGSKIMKVFLD KE+NNTEYKL+T
Sbjct: 110 AVQRPRNRTLTSVHEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLET 169

Query: 121 FAAVYRKLSGKDVVFDFPV 139
              VYRKL+GKDVVF++PV
Sbjct: 170 MVGVYRKLTGKDVVFEYPV 188

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XH45|RS7_BRAOL 40S ribosomal protein S7 OS=Brassica oleracea GN=RPS7 PE=2 SV=1

 Score =  236 bits (602), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 109/141 (77%), Positives = 130/141 (92%)

Query: 1   MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
           + +D+ GNRKAVVI++P+RLRKA+RKIH++LVRELEKKFSG DVI +ATRRI+RPPKKGS
Sbjct: 50  VSMDIAGNRKAVVIYVPFRLRKAFRKIHSRLVRELEKKFSGNDVIFVATRRIMRPPKKGS 109

Query: 61  AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
           AVQRPR+RTLTSVHEAMLEDV  PAEIVGKR RYR+DG+KIMKV+L+PKERNNTEYKL+T
Sbjct: 110 AVQRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRVDGTKIMKVYLEPKERNNTEYKLET 169

Query: 121 FAAVYRKLSGKDVVFDFPVTE 141
              VYRKL+GKDVVF++PV +
Sbjct: 170 MVGVYRKLTGKDVVFEYPVAD 190

Brassica oleracea (taxid: 3712)

>sp|Q949H0|RS7_HORVU 40S ribosomal protein S7 OS=Hordeum vulgare GN=RPS7 PE=2 SV=1

 Score =  230 bits (587), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 107/142 (75%), Positives = 131/142 (92%), Gaps = 1/142 (0%)

Query: 1   MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
           +Q+DV GNRKAVVIH+PYRLRK +RKIH +LVRELE+  SGKDV+ +ATRRI+RPPKKGS
Sbjct: 50  IQMDVVGNRKAVVIHVPYRLRKPFRKIHVRLVRELER-VSGKDVVFVATRRIVRPPKKGS 108

Query: 61  AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
           AVQRPR+RTLT+VH+ +LEDVV PAEIVGKR+RYRLDG+K++K++LDPKERNNTEYKL+T
Sbjct: 109 AVQRPRTRTLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLET 168

Query: 121 FAAVYRKLSGKDVVFDFPVTEA 142
           F+AVYR+L GKDVVF++PV E 
Sbjct: 169 FSAVYRRLCGKDVVFEYPVAET 190

Hordeum vulgare (taxid: 4513)

>sp|Q90YR7|RS7_ICTPU 40S ribosomal protein S7 OS=Ictalurus punctatus GN=rps7 PE=2 SV=1

 Score =  169 bits (428), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 83/141 (58%), Positives = 112/141 (79%), Gaps = 4/141 (2%)

Query: 2   QIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSA 61
           +I+V G+RKA++I +P    KA++KI  +LVRELEKKFSGK V+ IA RRIL  P + S 
Sbjct: 50  EIEVGGSRKAIIIFVPVPQLKAFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSR 109

Query: 62  VQ----RPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYK 117
            +    RPRSRTLT+VH+A+LED+V P+EIVGKRIR +LD S+++KV LD  ++NN E+K
Sbjct: 110 TKNKQKRPRSRTLTAVHDAILEDLVYPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHK 169

Query: 118 LDTFAAVYRKLSGKDVVFDFP 138
           ++TFA VY+KL+GKDVVF+FP
Sbjct: 170 VETFAGVYKKLTGKDVVFEFP 190

Ictalurus punctatus (taxid: 7998)

>sp|P62084|RS7_DANRE 40S ribosomal protein S7 OS=Danio rerio GN=rps7 PE=2 SV=1

 Score =  167 bits (424), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/141 (57%), Positives = 112/141 (79%), Gaps = 4/141 (2%)

Query: 2   QIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSA 61
           +I+V G+RKA++I +P    K+++KI  +LVRELEKKFSGK V+ IA RRIL  P + S 
Sbjct: 50  EIEVGGSRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSR 109

Query: 62  VQ----RPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYK 117
            +    RPRSRTLT+VH+A+LED+V P+EIVGKRIR +LD S+++KV LD  ++NN E+K
Sbjct: 110 TKNKQKRPRSRTLTNVHDAILEDLVFPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHK 169

Query: 118 LDTFAAVYRKLSGKDVVFDFP 138
           ++TFA VY+KL+GKDV+F+FP
Sbjct: 170 VETFAGVYKKLTGKDVIFEFP 190

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
255586077	191	40S ribosomal protein S7, putative [Rici	1.0	0.743	0.901	8e-70
225455966	191	PREDICTED: 40S ribosomal protein S7 isof	1.0	0.743	0.887	2e-68
356531198	191	PREDICTED: 40S ribosomal protein S7 [Gly	1.0	0.743	0.873	3e-68
217075354	191	unknown [Medicago truncatula]	1.0	0.743	0.880	3e-68
217071198	191	unknown [Medicago truncatula] gi|3884939	1.0	0.743	0.880	4e-68
357496953	191	40S ribosomal protein S7-like protein [M	1.0	0.743	0.880	4e-68
351726972	191	uncharacterized protein LOC100527642 [Gl	1.0	0.743	0.866	6e-68
351727497	191	uncharacterized protein LOC100527680 [Gl	1.0	0.743	0.866	9e-68
255626331	190	unknown [Glycine max]	0.992	0.742	0.872	1e-67
388504256	191	unknown [Medicago truncatula]	1.0	0.743	0.880	1e-67

>gi|255586077|ref|XP_002533703.1| 40S ribosomal protein S7, putative [Ricinus communis] gi|223526398|gb|EEF28686.1| 40S ribosomal protein S7, putative [Ricinus communis]

 Score =  268 bits (684), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 128/142 (90%), Positives = 139/142 (97%)

Query: 1   MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
           +QIDV GNRKAVVIH+PYRLRKAYRKIH +LVRELEKKFSGKDVILIATRRI+RPPKKGS
Sbjct: 50  VQIDVAGNRKAVVIHVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGS 109

Query: 61  AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
           AVQRPR+RTLT+VHEAMLED+VLPAEIVGKR RYR+DGSKIMKVFLDPKERNNTEYKL+T
Sbjct: 110 AVQRPRTRTLTAVHEAMLEDIVLPAEIVGKRTRYRIDGSKIMKVFLDPKERNNTEYKLET 169

Query: 121 FAAVYRKLSGKDVVFDFPVTEA 142
           F+AVYRKLSGKDVVF+FPVTEA
Sbjct: 170 FSAVYRKLSGKDVVFEFPVTEA 191

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455966|ref|XP_002278371.1| PREDICTED: 40S ribosomal protein S7 isoform 1 [Vitis vinifera] gi|147789484|emb|CAN71757.1| hypothetical protein VITISV_000603 [Vitis vinifera] gi|297734220|emb|CBI15467.3| unnamed protein product [Vitis vinifera]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 126/142 (88%), Positives = 138/142 (97%)

Query: 1   MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
           +Q+DV G RKAVVIHIPYRLRKA+RKIH +LVRELEKKFSGKDVI IATRRI+RPPKKGS
Sbjct: 50  LQVDVSGTRKAVVIHIPYRLRKAFRKIHVRLVRELEKKFSGKDVIFIATRRIVRPPKKGS 109

Query: 61  AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
           AVQRPRSRTLTSVHEAMLED+VLPAEIVGKRIRYRLDGSKI+K+FLDPKERNNTEYKL+T
Sbjct: 110 AVQRPRSRTLTSVHEAMLEDIVLPAEIVGKRIRYRLDGSKIIKIFLDPKERNNTEYKLET 169

Query: 121 FAAVYRKLSGKDVVFDFPVTEA 142
           FAAVYRKLSGKDVVF++P+TEA
Sbjct: 170 FAAVYRKLSGKDVVFEYPLTEA 191

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531198|ref|XP_003534165.1| PREDICTED: 40S ribosomal protein S7 [Glycine max]

 Score =  262 bits (670), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 124/142 (87%), Positives = 138/142 (97%)

Query: 1   MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
           +QIDV GNRKAVVIH+PYRLRK +RKIH +LVRELEKKFSGKDVILIATRRILRPPKKGS
Sbjct: 50  VQIDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILIATRRILRPPKKGS 109

Query: 61  AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
           AVQRPR+RTLT+VHEAMLED+VLPAEIVGKR+RY++DGSKIMKVFLDPKERNNTEYKL+T
Sbjct: 110 AVQRPRTRTLTAVHEAMLEDIVLPAEIVGKRVRYKIDGSKIMKVFLDPKERNNTEYKLET 169

Query: 121 FAAVYRKLSGKDVVFDFPVTEA 142
           FAAVYRKLSGKD+VF++P TEA
Sbjct: 170 FAAVYRKLSGKDIVFEYPTTEA 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075354|gb|ACJ86037.1| unknown [Medicago truncatula]

 Score =  262 bits (670), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 125/142 (88%), Positives = 137/142 (96%)

Query: 1   MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
           +Q+DV GNRKAVVIH+PYRLRK +RKIH +LVRELEKKFSGKDVILIATRRI+RPPKKGS
Sbjct: 50  VQVDVSGNRKAVVIHVPYRLRKGFRKIHARLVRELEKKFSGKDVILIATRRIVRPPKKGS 109

Query: 61  AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
           A QRPRSRTLT+VHEAMLEDVVLPAEIVGKR RYR+DGSKIMKVFLDPKERNNTEYKL+T
Sbjct: 110 AAQRPRSRTLTAVHEAMLEDVVLPAEIVGKRTRYRIDGSKIMKVFLDPKERNNTEYKLET 169

Query: 121 FAAVYRKLSGKDVVFDFPVTEA 142
           F+AVYRKLSGKDVVF++PVTEA
Sbjct: 170 FSAVYRKLSGKDVVFEYPVTEA 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071198|gb|ACJ83959.1| unknown [Medicago truncatula] gi|388493938|gb|AFK35035.1| unknown [Medicago truncatula]

 Score =  262 bits (669), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 125/142 (88%), Positives = 137/142 (96%)

Query: 1   MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
           +Q+DV GNRKAVVIH+PYRLRK +RKIH +LVRELEKKFSGKDVILIATRRI+RPPKKGS
Sbjct: 50  VQVDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGS 109

Query: 61  AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
           A QRPRSRTLT+VHEAMLEDVVLPAEIVGKR RYR+DGSKIMKVFLDPKERNNTEYKL+T
Sbjct: 110 AAQRPRSRTLTAVHEAMLEDVVLPAEIVGKRTRYRIDGSKIMKVFLDPKERNNTEYKLET 169

Query: 121 FAAVYRKLSGKDVVFDFPVTEA 142
           F+AVYRKLSGKDVVF++PVTEA
Sbjct: 170 FSAVYRKLSGKDVVFEYPVTEA 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357496953|ref|XP_003618765.1| 40S ribosomal protein S7-like protein [Medicago truncatula] gi|355493780|gb|AES74983.1| 40S ribosomal protein S7-like protein [Medicago truncatula] gi|388492530|gb|AFK34331.1| unknown [Medicago truncatula]

 Score =  262 bits (669), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 125/142 (88%), Positives = 137/142 (96%)

Query: 1   MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
           +Q+DV GNRKAVVIH+PYRLRK +RKIH +LVRELEKKFSGKDVILIATRRI+RPPKKGS
Sbjct: 50  VQVDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGS 109

Query: 61  AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
           A QRPRSRTLT+VHEAMLEDVVLPAEIVGKR RYR+DGSKIMKVFLDPKERNNTEYKL+T
Sbjct: 110 AAQRPRSRTLTAVHEAMLEDVVLPAEIVGKRTRYRVDGSKIMKVFLDPKERNNTEYKLET 169

Query: 121 FAAVYRKLSGKDVVFDFPVTEA 142
           F+AVYRKLSGKDVVF++PVTEA
Sbjct: 170 FSAVYRKLSGKDVVFEYPVTEA 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726972|ref|NP_001235353.1| uncharacterized protein LOC100527642 [Glycine max] gi|255632842|gb|ACU16774.1| unknown [Glycine max]

 Score =  261 bits (668), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 123/142 (86%), Positives = 138/142 (97%)

Query: 1   MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
           +QIDV GNRKAV+IH+PYRLRK +RKIH +LVRELEKKFSGKDVILIATRRI+RPPKKGS
Sbjct: 50  VQIDVSGNRKAVIIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGS 109

Query: 61  AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
           AVQRPR+RTLT+VHEAMLED+VLPAEIVGKR+RY++DGSKIMKVFLDPKERNNTEYKL+T
Sbjct: 110 AVQRPRTRTLTAVHEAMLEDIVLPAEIVGKRVRYKIDGSKIMKVFLDPKERNNTEYKLET 169

Query: 121 FAAVYRKLSGKDVVFDFPVTEA 142
           FAAVYRKLSGKDVVF++P TEA
Sbjct: 170 FAAVYRKLSGKDVVFEYPTTEA 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727497|ref|NP_001235883.1| uncharacterized protein LOC100527680 [Glycine max] gi|255632936|gb|ACU16822.1| unknown [Glycine max]

 Score =  261 bits (666), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 123/142 (86%), Positives = 138/142 (97%)

Query: 1   MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
           +Q+DV GNRKAVVIH+PYRLRK +RKIH +LVRELEKKFSGKDVIL+ATRRILRPPKKGS
Sbjct: 50  VQVDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILVATRRILRPPKKGS 109

Query: 61  AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
           A QRPRSRTLT+VHEAMLEDVVLPAEIVGKR+R+R+DGSKIMKV+LDPKERNNTEYKL+T
Sbjct: 110 AAQRPRSRTLTAVHEAMLEDVVLPAEIVGKRVRFRIDGSKIMKVYLDPKERNNTEYKLET 169

Query: 121 FAAVYRKLSGKDVVFDFPVTEA 142
           FAAVYRKLSGKDVVF++PV+EA
Sbjct: 170 FAAVYRKLSGKDVVFEYPVSEA 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255626331|gb|ACU13510.1| unknown [Glycine max]

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 123/141 (87%), Positives = 137/141 (97%)

Query: 1   MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
           +QIDV GNRKAVVIH+PYRLRK +RKIH +LVRELEKKFSGKDVILIATRRILRPPKKGS
Sbjct: 50  VQIDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILIATRRILRPPKKGS 109

Query: 61  AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
           AVQRPR+RTLT+VHEAMLED+VLPAEIVGKR+RY++DGSKIMKVFLDPKERNNTEYKL+T
Sbjct: 110 AVQRPRTRTLTAVHEAMLEDIVLPAEIVGKRVRYKIDGSKIMKVFLDPKERNNTEYKLET 169

Query: 121 FAAVYRKLSGKDVVFDFPVTE 141
           FAAVYRKLSGKD+VF++P TE
Sbjct: 170 FAAVYRKLSGKDIVFEYPTTE 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504256|gb|AFK40194.1| unknown [Medicago truncatula]

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 125/142 (88%), Positives = 136/142 (95%)

Query: 1   MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
           +Q+DV GNRKAVVIH+PYRLRK +RKIH +LVRELEKKFSGKDVILIATRRI+RPPKKGS
Sbjct: 50  VQVDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGS 109

Query: 61  AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
           A QRPRSRTLT+VHEAMLEDVVLPAEIVGKR RYR+DGSKIMKVFLDPKERNNTEYKL+T
Sbjct: 110 AAQRPRSRTLTAVHEAMLEDVVLPAEIVGKRTRYRIDGSKIMKVFLDPKERNNTEYKLET 169

Query: 121 FAAVYRKLSGKDVVFDFPVTEA 142
           F AVYRKLSGKDVVF++PVTEA
Sbjct: 170 FFAVYRKLSGKDVVFEYPVTEA 191

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2200839	191	AT1G48830 [Arabidopsis thalian	1.0	0.743	0.809	9e-61
UNIPROTKB|Q8LJU5	192	RPS7 "40S ribosomal protein S7	0.992	0.734	0.794	3.9e-60
UNIPROTKB|Q10MS5	192	Os03g0297100 "Os03g0297100 pro	0.992	0.734	0.780	1e-59
TAIR|locus:2076839	191	AT3G02560 [Arabidopsis thalian	1.0	0.743	0.788	2.2e-57
TAIR|locus:2181402	190	AT5G16130 [Arabidopsis thalian	0.978	0.731	0.791	4.6e-57
UNIPROTKB|A8JGI9	194	RPS7 "Ribosomal protein S7" [C	0.992	0.726	0.661	1.5e-49
UNIPROTKB|F1NN16	201	RPS7 "Uncharacterized protein"	0.964	0.681	0.581	1.1e-39
ZFIN|ZDB-GENE-040426-1718	194	rps7 "ribosomal protein S7" [D	0.964	0.706	0.574	2.3e-39
UNIPROTKB|P50894	194	rps7 "40S ribosomal protein S7	0.964	0.706	0.574	2.9e-39
UNIPROTKB|A6H769	194	RPS7 "40S ribosomal protein S7	0.964	0.706	0.574	6.1e-39

TAIR|locus:2200839 AT1G48830 [Arabidopsis thaliana (taxid:3702)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 115/142 (80%), Positives = 136/142 (95%)

Query:     1 MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
             +Q+D+ G RKA+V+++PYRLRKAYRKIH +LVRELEKKFSGKDVILIATRRI+RPPKKGS
Sbjct:    50 VQVDISGGRKAIVVNVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGS 109

Query:    61 AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
             A +RPR+RTLTSVHEA+L+DVVLPAEIVGKR RYRLDG+KIMKVFLDPKERNNTEYK++ 
Sbjct:   110 AAKRPRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEA 169

Query:   121 FAAVYRKLSGKDVVFDFPVTEA 142
             F+AVY+KL+GKDVVF+FP+TEA
Sbjct:   170 FSAVYKKLTGKDVVFEFPITEA 191

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IBA

GO:0006412 "translation" evidence=IEA;ISS

GO:0030686 "90S preribosome" evidence=IBA

GO:0032040 "small-subunit processome" evidence=IBA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q8LJU5 RPS7 "40S ribosomal protein S7" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 112/141 (79%), Positives = 134/141 (95%)

Query:     1 MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
             +Q+D+PGNRKAV+I++PYRLRKAY+KIH +LVRELEKKFSGKDV+L+ATRRI+RPPKKGS
Sbjct:    50 VQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGS 109

Query:    61 AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
             AV RPR+RTLT+VH+ +LEDVV PAEIVGKR+RY LDG KIMK+FLDPKERNNTEYKLDT
Sbjct:   110 AVVRPRTRTLTAVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDT 169

Query:   121 FAAVYRKLSGKDVVFDFPVTE 141
             F++VYR+L GKDVVFD+P+TE
Sbjct:   170 FSSVYRRLCGKDVVFDYPMTE 190

GO:0006364 "rRNA processing" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0030686 "90S preribosome" evidence=ISS

GO:0032040 "small-subunit processome" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

UNIPROTKB|Q10MS5 Os03g0297100 "Os03g0297100 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 110/141 (78%), Positives = 135/141 (95%)

Query:     1 MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
             +Q+D+ GNRKAVVIH+PYRLRKA++KIH +LVRELEKKFSGKDV+++ATRRI+RPPKKGS
Sbjct:    50 VQMDIAGNRKAVVIHVPYRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGS 109

Query:    61 AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
             AVQRPR+RTLT+VH+ +LEDVV PAEIVGKRIRYRLDG+K++K+FLDPKERNNTEYKL+T
Sbjct:   110 AVQRPRTRTLTAVHDGILEDVVYPAEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLET 169

Query:   121 FAAVYRKLSGKDVVFDFPVTE 141
             F+AVYR+L GKDV F++P+TE
Sbjct:   170 FSAVYRRLCGKDVAFEYPMTE 190

GO:0006364 "rRNA processing" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0030686 "90S preribosome" evidence=ISS

GO:0032040 "small-subunit processome" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

TAIR|locus:2076839 AT3G02560 [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 112/142 (78%), Positives = 130/142 (91%)

Query:     1 MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
             +Q+D+ GNRKAVVI++P+RLRKA+RKIH +LVRELEKKFSGKDVI +ATRRI+RPPKKGS
Sbjct:    50 VQMDISGNRKAVVIYVPFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGS 109

Query:    61 AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
             AVQRPR+RTLTSVHEAMLEDV  PAEIVGKR RYRLDG+KIMKVFLD K +N+TEYKL+T
Sbjct:   110 AVQRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLET 169

Query:   121 FAAVYRKLSGKDVVFDFPVTEA 142
                VYRKL+GKDVVF++PV EA
Sbjct:   170 MVGVYRKLTGKDVVFEYPVIEA 191

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IBA

GO:0006412 "translation" evidence=IEA;ISS

GO:0030686 "90S preribosome" evidence=IBA

GO:0032040 "small-subunit processome" evidence=IBA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2181402 AT5G16130 [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 110/139 (79%), Positives = 127/139 (91%)

Query:     1 MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
             + +D+ GNRKAVVI++P+RLRKA+RKIH +LVRELEKKFSGKDVI + TRRI+RPPKKG+
Sbjct:    50 VHMDISGNRKAVVIYVPFRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGA 109

Query:    61 AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
             AVQRPR+RTLTSVHEAMLEDV  PAEIVGKR RYRLDGSKIMKVFLD KE+NNTEYKL+T
Sbjct:   110 AVQRPRNRTLTSVHEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLET 169

Query:   121 FAAVYRKLSGKDVVFDFPV 139
                VYRKL+GKDVVF++PV
Sbjct:   170 MVGVYRKLTGKDVVFEYPV 188

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IBA

GO:0006412 "translation" evidence=IEA;ISS

GO:0030686 "90S preribosome" evidence=IBA

GO:0032040 "small-subunit processome" evidence=IBA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

UNIPROTKB|A8JGI9 RPS7 "Ribosomal protein S7" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 516 (186.7 bits), Expect = 1.5e-49, P = 1.5e-49
 Identities = 94/142 (66%), Positives = 121/142 (85%)

Query:     2 QIDVP-GNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS 60
             ++DV  G RKA++IH+PYRL KA+ KI  +LVRELEKKFSG+DV+++  RRIL PP+ G 
Sbjct:    52 EVDVANGARKAIIIHVPYRLLKAFHKIQQRLVRELEKKFSGRDVVIVGNRRILPPPRNGK 111

Query:    61 AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
                RPRSRTLT+VH+A+L+D+V P EIVGKRIRYRLDGSKI+KV LDPK+RN+TEYKL+T
Sbjct:   112 TASRPRSRTLTAVHDAILDDLVYPTEIVGKRIRYRLDGSKILKVHLDPKDRNSTEYKLET 171

Query:   121 FAAVYRKLSGKDVVFDFPVTEA 142
             F +VY++L+GKDV F+FPV E+
Sbjct:   172 FGSVYKRLTGKDVSFEFPVAES 193

GO:0006364 "rRNA processing" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0030686 "90S preribosome" evidence=ISS

GO:0032040 "small-subunit processome" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

UNIPROTKB|F1NN16 RPS7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 82/141 (58%), Positives = 112/141 (79%)

Query:     2 QIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSA 61
             +I+V G RKA++I +P    K+++KI  +LVRELEKKFSGK V+ IA RRIL  P + S 
Sbjct:    57 EIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSR 116

Query:    62 VQ----RPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYK 117
              +    RPRSRTLT+VH+A+LED+V P+EIVGKRIR +LDGS+++KV LD  ++NN E+K
Sbjct:   117 TKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHK 176

Query:   118 LDTFAAVYRKLSGKDVVFDFP 138
             ++TF+ VY+KL+GKDVVF+FP
Sbjct:   177 VETFSGVYKKLTGKDVVFEFP 197

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IEA

ZFIN|ZDB-GENE-040426-1718 rps7 "ribosomal protein S7" [Danio rerio (taxid:7955)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 81/141 (57%), Positives = 112/141 (79%)

Query:     2 QIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSA 61
             +I+V G+RKA++I +P    K+++KI  +LVRELEKKFSGK V+ IA RRIL  P + S 
Sbjct:    50 EIEVGGSRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSR 109

Query:    62 VQ----RPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYK 117
              +    RPRSRTLT+VH+A+LED+V P+EIVGKRIR +LD S+++KV LD  ++NN E+K
Sbjct:   110 TKNKQKRPRSRTLTNVHDAILEDLVFPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHK 169

Query:   118 LDTFAAVYRKLSGKDVVFDFP 138
             ++TFA VY+KL+GKDV+F+FP
Sbjct:   170 VETFAGVYKKLTGKDVIFEFP 190

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0030686 "90S preribosome" evidence=IBA

GO:0006364 "rRNA processing" evidence=IBA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

GO:0032040 "small-subunit processome" evidence=IBA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IMP

GO:0030097 "hemopoiesis" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

UNIPROTKB|P50894 rps7 "40S ribosomal protein S7" [Takifugu rubripes (taxid:31033)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 81/141 (57%), Positives = 114/141 (80%)

Query:     2 QIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL-RPPKKGS 60
             +I+V G+RKA++I +P    K+++KI  +LVRELEKKFSGK V+ IA RRIL +P +K  
Sbjct:    50 EIEVGGSRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSR 109

Query:    61 AV---QRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYK 117
             +    +RPRSRTLTSVH+A+LED+V P+EIVGKRIR ++D S+++KV LD  ++NN E+K
Sbjct:   110 SKNKQKRPRSRTLTSVHDAILEDLVFPSEIVGKRIRVKMDSSRLIKVHLDKAQQNNVEHK 169

Query:   118 LDTFAAVYRKLSGKDVVFDFP 138
             ++TF+ VY+KL+GKDVVF+FP
Sbjct:   170 VETFSGVYKKLTGKDVVFEFP 190

GO:0006364 "rRNA processing" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0030686 "90S preribosome" evidence=ISS

GO:0032040 "small-subunit processome" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

UNIPROTKB|A6H769 RPS7 "40S ribosomal protein S7" [Bos taurus (taxid:9913)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 81/141 (57%), Positives = 111/141 (78%)

Query:     2 QIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSA 61
             +I+V G RKA++I +P    K+++KI  +LVRELEKKFSGK V+ IA RRIL  P + S 
Sbjct:    50 EIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSR 109

Query:    62 VQ----RPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYK 117
              +    RPRSRTLT+VH+A+LED+V P+EIVGKRIR +LDGS+++KV LD  ++NN E+K
Sbjct:   110 TKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHK 169

Query:   118 LDTFAAVYRKLSGKDVVFDFP 138
             ++TF+ VY+KL+GKDV F+FP
Sbjct:   170 VETFSGVYKKLTGKDVNFEFP 190

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

GO:0032040 "small-subunit processome" evidence=ISS

GO:0030686 "90S preribosome" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006364 "rRNA processing" evidence=ISS

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XET4	RS7_SECCE	No assigned EC number	0.7816	1.0	0.7395	N/A	no
Q9ZNS1	RS7_AVIMR	No assigned EC number	0.8297	0.9929	0.7421	N/A	no
Q10101	RS7_SCHPO	No assigned EC number	0.5357	0.9718	0.7076	yes	no
P62082	RS7_MOUSE	No assigned EC number	0.5744	0.9647	0.7061	yes	no
Q9VA91	RS7_DROME	No assigned EC number	0.5514	0.9295	0.6804	yes	no
P62084	RS7_DANRE	No assigned EC number	0.5744	0.9647	0.7061	yes	no
P62083	RS7_RAT	No assigned EC number	0.5744	0.9647	0.7061	yes	no
P62081	RS7_HUMAN	No assigned EC number	0.5744	0.9647	0.7061	yes	no
Q9C514	RS71_ARATH	No assigned EC number	0.8098	1.0	0.7434	yes	no
Q54I41	RS7_DICDI	No assigned EC number	0.5179	0.9577	0.7046	yes	no
Q23312	RS7_CAEEL	No assigned EC number	0.5401	0.9295	0.6804	yes	no
P48164	RS7B_YEAST	No assigned EC number	0.5467	0.9647	0.7210	yes	no
P33514	RS7_ANOGA	No assigned EC number	0.5661	0.9295	0.6875	yes	no
Q9XH45	RS7_BRAOL	No assigned EC number	0.7730	0.9929	0.7382	N/A	no
A6H769	RS7_BOVIN	No assigned EC number	0.5744	0.9647	0.7061	yes	no
Q949H0	RS7_HORVU	No assigned EC number	0.7535	0.9929	0.7382	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00017702001	SubName- Full=Putative uncharacterized protein (Chromosome chr17 scaffold_16, whole genome shotgun sequence); (191 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00031140001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (234 aa)				•	•	•	•		0.926
	GSVIVG00018552001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (155 aa)				•	•	•	•		0.911
	GSVIVG00025575001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (307 aa)				•	•	•	•		0.905
	GSVIVG00034206001	SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (129 aa)				•	•	•	•		0.904
	GSVIVG00017233001	RecName- Full=40S ribosomal protein S12; (140 aa)				•	•	•	•		0.900
	GSVIVG00023139001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (136 aa)				•	•	•	•		0.882
	GSVIVG00005647001	SubName- Full=Chromosome undetermined scaffold_155, whole genome shotgun sequence; (159 aa)				•	•	•			0.866
	GSVIVG00026857001	RecName- Full=60S ribosomal protein L36; (110 aa)				•	•	•	•		0.865
	GSVIVG00029522001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (129 aa)				•	•	•	•		0.856
	GSVIVG00016616001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (107 aa)				•	•	•	•		0.852

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	142
pfam01251	189	pfam01251, Ribosomal_S7e, Ribosomal protein S7e	1e-79
PTZ00389	184	PTZ00389, PTZ00389, 40S ribosomal protein S7; Prov	1e-54

>gnl|CDD|216389 pfam01251, Ribosomal_S7e, Ribosomal protein S7e

 Score =  232 bits (595), Expect = 1e-79
 Identities = 96/144 (66%), Positives = 118/144 (81%), Gaps = 3/144 (2%)

Query: 2   QIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSA 61
           +I+V G +KAVVI +P    KAYRKI  +LVRELEKKFSGK V+ +A RRIL  PK+ S 
Sbjct: 46  EIEVGGGKKAVVIFVPVPQLKAYRKIQQRLVRELEKKFSGKHVVFVAQRRILPKPKRKSR 105

Query: 62  VQ---RPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKL 118
            Q   RPRSRTLT+VH+A+LED+V PAEIVGKRIRYRLDGSK++KVFLD K++ N E+KL
Sbjct: 106 YQKQKRPRSRTLTAVHDAILEDLVYPAEIVGKRIRYRLDGSKLIKVFLDSKDQTNVEHKL 165

Query: 119 DTFAAVYRKLSGKDVVFDFPVTEA 142
           D+F+AVY+KL+GKDVVF+FP T A
Sbjct: 166 DSFSAVYKKLTGKDVVFEFPETNA 189

Length = 189

>gnl|CDD|185592 PTZ00389, PTZ00389, 40S ribosomal protein S7; Provisional

 Score =  169 bits (430), Expect = 1e-54
 Identities = 82/140 (58%), Positives = 108/140 (77%), Gaps = 3/140 (2%)

Query: 3   IDVPGN-RKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSA 61
           + V  + +KAVV+ +PYR+   YRKI  KL+ ELEKK   K V+++A R IL+ P K   
Sbjct: 45  VTVGKDKKKAVVVFVPYRMLMIYRKIQRKLIPELEKKL-KKHVVIVAQRTILKKPVKNYK 103

Query: 62  VQ-RPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDT 120
           ++ RPRSRTLT+VHEA+LED+V P+EIVGKR R R+DGSK++KVFLDPK+R N E KLD 
Sbjct: 104 LKTRPRSRTLTAVHEAILEDLVYPSEIVGKRTRVRVDGSKLLKVFLDPKDRKNVEEKLDA 163

Query: 121 FAAVYRKLSGKDVVFDFPVT 140
           F+AVY+KL+G+DVVF+FP  
Sbjct: 164 FSAVYKKLTGRDVVFEFPWD 183

Length = 184

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
PF01251	189	Ribosomal_S7e: Ribosomal protein S7e; InterPro: IP	100.0
KOG3320	192	consensus 40S ribosomal protein S7 [Translation, r	100.0
PTZ00389	184	40S ribosomal protein S7; Provisional	100.0
PRK06418	166	transcription elongation factor NusA-like protein;	99.71
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	81.29
COG0195	190	NusA Transcription elongation factor [Transcriptio	80.69

>PF01251 Ribosomal_S7e: Ribosomal protein S7e; InterPro: IPR000554 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=9.6e-80  Score=494.30  Aligned_cols=141  Identities=63%  Similarity=0.988  Sum_probs=121.3

Q ss_pred             CeeeecCCeeEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecCCCCCC----CcccccCCcchhHHHHh
Q 032387            1 MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKG----SAVQRPRSRTLTSVHEA   76 (142)
Q Consensus         1 kei~v~~~kkaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~kp~~~----~~qkrPRSRTLTaVhda   76 (142)
                      ||||||+|+||||||||||||++|||||.||++||||||||+||+|||||||||+|+++    .+|+|||||||||||||
T Consensus        45 KEi~v~~~kKAivIfVP~~~lk~f~KIq~rLv~ELEKKfsgk~Vv~iAqRrIl~kp~r~~~~~~~qkrPRSRTLTaVhda  124 (189)
T PF01251_consen   45 KEIEVGGGKKAIVIFVPVPQLKAFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRQKQKQKRPRSRTLTAVHDA  124 (189)
T ss_dssp             EEEEECTCEEEEEEEE-CCCCHHHHHHCHHHHHHHHHCTTTCEEEEEE------SS-SSS---TTS---CCCSHHHHHHH
T ss_pred             EEEEECCCcEEEEEEEcHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeccceEcCCCCcCccccccccCcCCcchHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999887    48999999999999999


Q ss_pred             hhhcccccceeeeeeEEEeeCCcEEEEEEeCccccccchhhhhHHHHHHHHhhCCcEEEECCCCC
Q 032387           77 MLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTE  141 (142)
Q Consensus        77 iLeDLv~PseIvGKRir~~~DGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLTgKdv~FeFp~~~  141 (142)
                      ||||||||+|||||||||++|||+++|||||++|||++|||+|||++|||+||||||+||||+++
T Consensus       125 ILeDLV~PseIVGKRir~rlDGskl~KV~LD~k~~~~ve~Kl~tfs~VYkkLTgK~v~FeFp~~~  189 (189)
T PF01251_consen  125 ILEDLVYPSEIVGKRIRVRLDGSKLIKVHLDKKDQNNVEHKLDTFSAVYKKLTGKDVVFEFPEQE  189 (189)
T ss_dssp             HHHHHTTTS-ECEEEEEE-TTS-EEEEEEEECCCCHHHHCCHHHHHHHHHHHCS-EEEEEEE---
T ss_pred             HHHhhccHHHhheeeEEEecCCCEEEEEEEChHHcccHHHHHHHHHHHHHHHcCCceEEEcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999864

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities []. One of these families consists of Xenopus S8, and mammalian, insect and yeast S7. These proteins have about 200 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_3 2XZM_3 3U5G_H 3U5C_H.

>KOG3320 consensus 40S ribosomal protein S7 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.9e-75  Score=467.86  Aligned_cols=141  Identities=62%  Similarity=0.964  Sum_probs=138.7

Q ss_pred             CeeeecCCeeEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCc-ccccCCcchhHHHHhhhh
Q 032387            1 MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSA-VQRPRSRTLTSVHEAMLE   79 (142)
Q Consensus         1 kei~v~~~kkaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~kp~~~~~-qkrPRSRTLTaVhdaiLe   79 (142)
                      +|||||||+||||||||+|+|++|||||.+|+|||||||||+||+|||+|||||+|++++. ||||||||||||||||||
T Consensus        50 ~eiev~Gg~Kaivi~VP~p~lk~fqki~~~LvreleKKF~gk~Vifia~Rrilpkp~rks~~qKRprsrtltaVhdaiLe  129 (192)
T KOG3320|consen   50 KEIEVGGGRKAIVIFVPVPQLKAFQKIQVRLVRELEKKFSGKHVIFIAQRRILPKPTRKSRTQKRPRSRTLTAVHDAILE  129 (192)
T ss_pred             EEEEecCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhcCCceEEEEEeeeeccCCCCCcccccCCccchHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999999999999999997 899999999999999999


Q ss_pred             cccccceeeeeeEEEeeCCcEEEEEEeCccccccchhhhhHHHHHHHHhhCCcEEEECCCCC
Q 032387           80 DVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTE  141 (142)
Q Consensus        80 DLv~PseIvGKRir~~~DGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLTgKdv~FeFp~~~  141 (142)
                      |+|||+|||||||||++||++++|||||++|+||+|||+|+|++||++||||||+||||+.+
T Consensus       130 d~vfP~eIvGkR~rv~ldg~ki~kV~LD~~~~n~~e~K~e~f~~vy~kLtGKdv~fEfp~~~  191 (192)
T KOG3320|consen  130 DLVFPAEIVGKRTRVKLDGSKLVKVHLDKKQQNNVEHKVETFSAVYKKLTGKDVVFEFPEFT  191 (192)
T ss_pred             hccchhhhcceeEEEEecCcEEEEEEechhhccchHHhHHHHHHHHHHhcCCceEEecCccc
Confidence            99999999999999999999999999999999999999999999999999999999999864

>PTZ00389 40S ribosomal protein S7; Provisional

Probab=100.00  E-value=2.3e-74  Score=461.67  Aligned_cols=140  Identities=59%  Similarity=0.957  Sum_probs=136.9

Q ss_pred             CeeeecCC-eeEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCc-ccccCCcchhHHHHhhh
Q 032387            1 MQIDVPGN-RKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSA-VQRPRSRTLTSVHEAML   78 (142)
Q Consensus         1 kei~v~~~-kkaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~kp~~~~~-qkrPRSRTLTaVhdaiL   78 (142)
                      |||||++| |||||||||||||++|||||.||++|||||| |+||+|||||||||+|+++++ |+|||||||||||||||
T Consensus        43 kei~v~~~~kkaivIfVP~~~lk~~~kiq~rLv~ELEKK~-g~~Vv~ia~RrIl~kp~r~~~~q~rPrSRTLTaVhdaiL  121 (184)
T PTZ00389         43 KEVTVGKDKKKAVVVFVPYRMLMIYRKIQRKLIPELEKKL-KKHVVIVAQRTILKKPVKNYKLKTRPRSRTLTAVHEAIL  121 (184)
T ss_pred             EEEEecCCCcEEEEEEecHHHHHHHHHHHHHHHHHHHHHh-CCeEEEEEEEEEcCCCCcCccccCCCCccchHHHHHHHH
Confidence            69999887 9999999999999999999999999999999 999999999999999999986 99999999999999999


Q ss_pred             hcccccceeeeeeEEEeeCCcEEEEEEeCccccccchhhhhHHHHHHHHhhCCcEEEECCCCC
Q 032387           79 EDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTE  141 (142)
Q Consensus        79 eDLv~PseIvGKRir~~~DGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLTgKdv~FeFp~~~  141 (142)
                      ||||||+|||||||||++|||+++||+||++|++++|||+|+|++||++|||+||.||||+++
T Consensus       122 eDLvyPaeIvGkRir~~~DGsk~~KV~Ld~~d~~~ve~Kletf~~VykkLTgkdV~fefp~~~  184 (184)
T PTZ00389        122 EDLVYPSEIVGKRTRVRVDGSKLLKVFLDPKDRKNVEEKLDAFSAVYKKLTGRDVVFEFPWDP  184 (184)
T ss_pred             HHhccchheeeeEEEEecCCcEEEEEEeCHHHhcccchhHHHHHHHHHHHhCCCeEEEecCCC
Confidence            999999999999999999999999999999999999999999999999999999999999864

>PRK06418 transcription elongation factor NusA-like protein; Validated

Probab=99.71  E-value=1.2e-17  Score=132.39  Aligned_cols=87  Identities=18%  Similarity=0.391  Sum_probs=76.1

Q ss_pred             HHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCcccccCCcchhHHHHhhhhcccccceeeeeeEEEeeCCcEEEEEEeCc
Q 032387           29 TKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDP  108 (142)
Q Consensus        29 ~rLv~ELEKKfsg~~Vv~iaqRrIl~kp~~~~~qkrPRSRTLTaVhdaiLeDLv~PseIvGKRir~~~DGskl~KV~LD~  108 (142)
                      ...++.|++++ ||+|=+|-                 .|-+    -+.+|+||+||++|+|+|++++.||+..+||++|+
T Consensus        79 G~~ik~l~~~l-gk~VevVE-----------------~s~d----~~~fl~Nl~~PA~V~gV~i~~~~dG~~~~kV~Vd~  136 (166)
T PRK06418         79 GKIAKALSRKL-GKKVRVVE-----------------KTND----IKKLAVQLLSPARVLGVNTVWLPDGTVQYVIRVSR  136 (166)
T ss_pred             chHHHHHHHHh-CCcEEEEE-----------------cCCC----HHHHHHhcCCCcEEEEEEEEEeCCCcEEEEEEECH
Confidence            45667777777 77776663                 2222    46789999999999999999999999999999999


Q ss_pred             cccccchhhhhHHHHHHHHhhCCcEEEEC
Q 032387          109 KERNNTEYKLDTFAAVYRKLSGKDVVFDF  137 (142)
Q Consensus       109 ~~~~~ve~Kl~tfs~VYkkLTgKdv~FeF  137 (142)
                      +|++++++|+++|++||++|||++|.|+|
T Consensus       137 ~Dk~~l~~k~e~~~~v~~kltgk~v~~~f  165 (166)
T PRK06418        137 RDRRRLPAKPELLESILSKITGTEVKIRV  165 (166)
T ss_pred             HHhhcccccHHHHHHHHHHHHCCcEEEEe
Confidence            99999999999999999999999999998

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=81.29  E-value=11  Score=30.92  Aligned_cols=95  Identities=22%  Similarity=0.264  Sum_probs=58.5

Q ss_pred             hhHHHHHHHHHHHHHHHHh-hcCCCeEEEEeeeeecCCCCCCCcccccCCcchhHHHHhhhhcccccceeeeeeEEEee-
Q 032387           19 RLRKAYRKIHTKLVRELEK-KFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRL-   96 (142)
Q Consensus        19 ~~lk~f~kiq~rLv~ELEK-Kfsg~~Vv~iaqRrIl~kp~~~~~qkrPRSRTLTaVhdaiLeDLv~PseIvGKRir~~~-   96 (142)
                      +.+..|.+.+.+++.=|.. +-.|++|+|+|-+.+-..+ -  .--.+.+|=....++...+-+.--+++|| |+.+.. 
T Consensus       110 ~~~~~yg~~~~~fl~~l~~L~~~g~nII~tAhe~~~~~~-d--e~G~~~~r~~P~i~~K~~n~l~G~~DvV~-rl~i~~~  185 (220)
T TIGR01618       110 PELQHYQKLDLWFLDLLTVLKESNKNIYATAWELTNQSS-G--ESGQIYNRYQPDIREKVLNAFLGLTDVVG-RIVLNGE  185 (220)
T ss_pred             cccccHHHHHHHHHHHHHHHHhCCCcEEEEEeecccccc-C--CCCCCcceechhhhhhHHHhhcccccEEE-EEEEccC
Confidence            3567888887665543321 2259999999988642111 1  11123445566677888888888999999 666655 


Q ss_pred             CCcEEEEEEeCccccccchhhhh
Q 032387           97 DGSKIMKVFLDPKERNNTEYKLD  119 (142)
Q Consensus        97 DGskl~KV~LD~~~~~~ve~Kl~  119 (142)
                      +|.+.+  .+++.+.....++||
T Consensus       186 ~g~R~~--~~~~~~~~~AKNrld  206 (220)
T TIGR01618       186 TGERGF--ILDPSKGNYAKNRLD  206 (220)
T ss_pred             CCceEE--EECCCCCcccccccc
Confidence            477665  455555444444443

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>COG0195 NusA Transcription elongation factor [Transcription]

Probab=80.69  E-value=4.7  Score=32.87  Aligned_cols=61  Identities=18%  Similarity=0.279  Sum_probs=53.2

Q ss_pred             hhhcccccceeeeeeEEEeeCCcEEEEEEeCccccccchhhhhHHHHHHHHhhCCcEEEECCC
Q 032387           77 MLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPV  139 (142)
Q Consensus        77 iLeDLv~PseIvGKRir~~~DGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLTgKdv~FeFp~  139 (142)
                      .+-++++|+++++-.+... ||. .+.|.+.+.|...+-.|-..-...-++|||..+..++..
T Consensus       121 fI~nal~Pa~v~~V~~~~~-d~~-~~~v~V~~~~~~~aIGk~G~Nvrla~~Ltg~~i~I~~~~  181 (190)
T COG0195         121 FIKNALAPAEVLSVNIKED-DGH-VAIVVVPPDQLSLAIGKGGQNVRLASQLTGWEIDIETIS  181 (190)
T ss_pred             HHHHhcCcceEeEEEEEeC-CCc-EEEEEECHHHHhhccCcccHHHHHHHHHhCCEEEEEehh
Confidence            4567888999999888877 776 899999999999999999999999999999999988753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	142
3u5c_H	190	The Structure Of The Eukaryotic Ribosome At 3.0 A R		4e-36
3zey_4	202	High-resolution Cryo-electron Microscopy Structure		3e-23
2xzm_3	197	Crystal Structure Of The Eukaryotic 40s Ribosomal S		5e-16

>pdb|3U5C|H Chain H, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 190

Iteration: 1
 Score =  146 bits (368), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 74/139 (53%), Positives = 98/139 (70%), Gaps = 2/139 (1%)
Query: 2   QIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL-RPPKKGS 60
           +IDV G +KA+ I +P      + K+ TKL RELEKKF  + VI +A RRIL +P +   
Sbjct: 48  EIDVAGGKKALAIFVPVPSLAGFHKVQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSR 107
Query: 61  AVQ-RPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLD 119
            VQ RPRSRTLT+VH+ +LED+V P EIVGKR+RY + G+KI KV LD K+    +YKL+
Sbjct: 108 QVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLE 167
Query: 120 TFAAVYRKLSGKDVVFDFP 138
           +F AVY KL+GK +VF+ P
Sbjct: 168 SFQAVYNKLTGKQIVFEIP 186

>pdb|3ZEY|4 Chain 4, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 202

Iteration: 1
 Score =  103 bits (258), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/128 (43%), Positives = 79/128 (61%), Gaps = 1/128 (0%)
Query: 11  AVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQR-PRSRT 69
           A++I  P R     RKI   L  ELEK+F G  V+L+A R+I + P     +Q+  RSRT
Sbjct: 63  AMIILYPLRFIMLVRKIQRTLTAELEKRFPGNIVVLVAQRKITKRPNDVYKLQQVQRSRT 122
Query: 70  LTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLS 129
             +V E +L D++ P ++VG+R RYR DGSK+MKVFLD ++R   E +L   A VY+ L+
Sbjct: 123 SVAVFENILNDLIYPCDVVGRRWRYRTDGSKLMKVFLDARDRKRVESRLPLLAHVYKLLT 182
Query: 130 GKDVVFDF 137
            + V F F
Sbjct: 183 HRTVTFGF 190

>pdb|2XZM|3 Chain 3, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 197

Iteration: 1
 Score = 79.7 bits (195), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 82/131 (62%), Gaps = 4/131 (3%)
Query: 9   RKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPP--KKGSAVQRPR 66
           + AV+I++ ++  +       KL+ ELEKK   K ++    +R +     K+  + QRPR
Sbjct: 58  KSAVLIYVHFQSYRVLLSAARKLIIELEKKL--KQIVFFTAQRKIESKWVKEHKSQQRPR 115
Query: 67  SRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYR 126
           SR LT V++A+L+D++LP+ ++GKRIR RLDG+   ++ LD  +R+  E KLD    +Y+
Sbjct: 116 SRCLTYVYDALLDDLLLPSTLIGKRIRARLDGTSFYRIQLDQNDRDFLEEKLDAITHIYK 175
Query: 127 KLSGKDVVFDF 137
            ++ ++V F+F
Sbjct: 176 TVTTREVTFEF 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
3u5c_H	190	RP30, RP40, 40S ribosomal protein S7-A; translatio	1e-62
2xzm_3	197	RPS7E, 40S ribosomal protein RPS7E; ribosome, tran	3e-57

>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_H Length = 190

 Score =  189 bits (481), Expect = 1e-62
 Identities = 73/141 (51%), Positives = 97/141 (68%), Gaps = 2/141 (1%)

Query: 2   QIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS- 60
           +IDV G +KA+ I +P      + K+ TKL RELEKKF  + VI +A RRIL  P + S 
Sbjct: 48  EIDVAGGKKALAIFVPVPSLAGFHKVQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSR 107

Query: 61  -AVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLD 119
              +RPRSRTLT+VH+ +LED+V P EIVGKR+RY + G+KI KV LD K+    +YKL+
Sbjct: 108 QVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLE 167

Query: 120 TFAAVYRKLSGKDVVFDFPVT 140
           +F AVY KL+GK +VF+ P  
Sbjct: 168 SFQAVYNKLTGKQIVFEIPSE 188

>2xzm_3 RPS7E, 40S ribosomal protein RPS7E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_3 Length = 197

 Score =  175 bits (446), Expect = 3e-57
 Identities = 50/145 (34%), Positives = 86/145 (59%), Gaps = 6/145 (4%)

Query: 2   QIDVPGNRK----AVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRIL-RPP 56
           +  +    K    AV+I++ ++  +       KL+ ELEKK   + V   A R+I  +  
Sbjct: 47  EFQINKTNKKAKSAVLIYVHFQSYRVLLSAARKLIIELEKKLK-QIVFFTAQRKIESKWV 105

Query: 57  KKGSAVQRPRSRTLTSVHEAMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEY 116
           K+  + QRPRSR LT V++A+L+D++LP+ ++GKRIR RLDG+   ++ LD  +R+  E 
Sbjct: 106 KEHKSQQRPRSRCLTYVYDALLDDLLLPSTLIGKRIRARLDGTSFYRIQLDQNDRDFLEE 165

Query: 117 KLDTFAAVYRKLSGKDVVFDFPVTE 141
           KLD    +Y+ ++ ++V F+F   +
Sbjct: 166 KLDAITHIYKTVTTREVTFEFKEDK 190

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
3u5c_H	190	RP30, RP40, 40S ribosomal protein S7-A; translatio	100.0
2xzm_3	197	RPS7E, 40S ribosomal protein RPS7E; ribosome, tran	100.0
2cxc_A	144	NUSA; transcription termination, RNA binding prote	84.79

>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_H

Probab=100.00  E-value=3.8e-81  Score=501.36  Aligned_cols=141  Identities=52%  Similarity=0.884  Sum_probs=136.9

Q ss_pred             CeeeecCCeeEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCC--cccccCCcchhHHHHhhh
Q 032387            1 MQIDVPGNRKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS--AVQRPRSRTLTSVHEAML   78 (142)
Q Consensus         1 kei~v~~~kkaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~kp~~~~--~qkrPRSRTLTaVhdaiL   78 (142)
                      ||||||||+||||||||+|||++|||||+||++||||||||+||+|||||||||||++++  +|+|||||||||||||||
T Consensus        47 kEiev~~~kKAivIfVP~p~lk~f~KIq~rLvrELEKKfsgkhVvfiAqRrIlpkp~r~~~~kqkRPRSRTLTaVhdaiL  126 (190)
T 3u5c_H           47 REIDVAGGKKALAIFVPVPSLAGFHKVQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKIL  126 (190)
T ss_dssp             EEEECTTSCEEEEEEECSSSHHHHHHHTHHHHHHHHHTTCSEEEEEEECCCCCCCCCSSSCCCSCCCGGGSHHHHHHHHH
T ss_pred             EEEEecCCcEEEEEEecHHHHHHHHHHHHHHHHHHHhccCCCEEEEEecceEcCCCccCCcccccCCCCCchhHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999887  499999999999999999


Q ss_pred             hcccccceeeeeeEEEeeCCcEEEEEEeCccccccchhhhhHHHHHHHHhhCCcEEEECCCCC
Q 032387           79 EDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTE  141 (142)
Q Consensus        79 eDLv~PseIvGKRir~~~DGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLTgKdv~FeFp~~~  141 (142)
                      ||||||+|||||||||++|||+++|||||++||||+|||+|||++|||+||||||+||||+.+
T Consensus       127 eDLv~P~eIVGKRir~rlDGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLTgkdv~FeFp~~~  189 (190)
T 3u5c_H          127 EDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIPSET  189 (190)
T ss_dssp             HHHSCSSCEEEEEEEECSSSCEEEEEEECSSSTHHHHTTHHHHHHHHHHHHSCEEEEECCC--
T ss_pred             hhcccchheeeeEEEEecCCCEEEEEEECHHHhcccchhhHHHHHHHHHhhCCcEEEEecCcc
Confidence            999999999999999999999999999999999999999999999999999999999999864

>2xzm_3 RPS7E, 40S ribosomal protein RPS7E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_3

Probab=100.00  E-value=1e-69  Score=437.34  Aligned_cols=140  Identities=36%  Similarity=0.588  Sum_probs=135.0

Q ss_pred             Ceeeec-CC---eeEEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCC-cccccCCcchhHHHH
Q 032387            1 MQIDVP-GN---RKAVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGS-AVQRPRSRTLTSVHE   75 (142)
Q Consensus         1 kei~v~-~~---kkaivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~kp~~~~-~qkrPRSRTLTaVhd   75 (142)
                      |||||| ||   +||||||||+||+++|||||.||++|||||| |+||+|||||||||+|+++. +|+||||||||||||
T Consensus        46 Keiev~~~~~k~kkaivIfVP~~~lk~f~kiq~rLvrELEKKf-g~~Vv~ia~RrIl~kp~~~~~~q~rprsrTltaV~~  124 (197)
T 2xzm_3           46 KEFQINKTNKKAKSAVLIYVHFQSYRVLLSAARKLIIELEKKL-KQIVFFTAQRKIESKWVKEHKSQQRPRSRCLTYVYD  124 (197)
T ss_dssp             EEEEEECTTCCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHTT-SSEEEEEECCCCCCSSCCCCTTCCCCGGGSHHHHHH
T ss_pred             EEEEecCCCCccceEEEEEEccchhhHHHHHHHHHHHHHHHHh-CCcEEEEecccccCCCcccCccccCCCccchhhhHH
Confidence            689997 67   7799999999999999999999999999999 89999999999999997754 899999999999999


Q ss_pred             hhhhcccccceeeeeeEEEeeCCcEEEEEEeCccccccchhhhhHHHHHHHHhhCCcEEEECCCCC
Q 032387           76 AMLEDVVLPAEIVGKRIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVVFDFPVTE  141 (142)
Q Consensus        76 aiLeDLv~PseIvGKRir~~~DGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLTgKdv~FeFp~~~  141 (142)
                      |||||||||+|||||||||++|||+++||+||++||+++|||+|+|++||++|||+||+||||+.+
T Consensus       125 aiLeDLv~PaeIvGkRir~~~DGs~~~KV~Ld~~d~~~ve~Kletf~~VykkLTGkdV~feFp~~~  190 (197)
T 2xzm_3          125 ALLDDLLLPSTLIGKRIRARLDGTSFYRIQLDQNDRDFLEEKLDAITHIYKTVTTREVTFEFKEDK  190 (197)
T ss_dssp             HHHHHHSTTSCCSEEEEEECSSSCEECCEEEESTTHHHHHHHHHHHHHHHHHHSCCBCCEEEECCC
T ss_pred             HHHHHhccchheeeeEEEEecCCCEEEEEEeCHHHhcccccchHHHHHHHHHHhCCCEEEEEcCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999865

>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A

Probab=84.79  E-value=2.4  Score=31.98  Aligned_cols=101  Identities=14%  Similarity=0.128  Sum_probs=71.5

Q ss_pred             EEEEEecchhHHHHHHHHHHHHHHHHhhcCCCeEEEEeeeeecCCCCCCCcccccCCcchhHHHHhhhhcccccceeeee
Q 032387           11 AVVIHIPYRLRKAYRKIHTKLVRELEKKFSGKDVILIATRRILRPPKKGSAVQRPRSRTLTSVHEAMLEDVVLPAEIVGK   90 (142)
Q Consensus        11 aivifVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~kp~~~~~qkrPRSRTLTaVhdaiLeDLv~PseIvGK   90 (142)
                      .+++.|+=-.+-+.--.....++.+++.+ |..+=+|-.                 |-    =-...+..+++|+++.+-
T Consensus        37 r~i~vVk~g~vGa~IG~~G~ri~~i~~el-gekIdIV~~-----------------s~----d~~~fI~naLsPA~V~~V   94 (144)
T 2cxc_A           37 RLIFLVSEGEAGRAIGRGGRLIKLLREAL-GKNIEVVEY-----------------SS----DLERIVKNLFPGVKIESI   94 (144)
T ss_dssp             EEEEEECTTCHHHHHCGGGHHHHHHHHHH-SSEEEEEEC-----------------CS----SHHHHHHHHSTTSCEEEE
T ss_pred             EEEEEEeCCCccccCccCchHHHHHHHHh-CCeeEEEEc-----------------CC----CHHHHHHHhcCCceEEEE
Confidence            45566655556555545566777777777 888877631                 11    134456788999999999


Q ss_pred             eEEEeeCCcEEEEEEeCccccccchhhhhHHHHHHHHhhCCcEE
Q 032387           91 RIRYRLDGSKIMKVFLDPKERNNTEYKLDTFAAVYRKLSGKDVV  134 (142)
Q Consensus        91 Rir~~~DGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLTgKdv~  134 (142)
                      .+-.. ||++.+.|.+++.|....--|-..-...-.+|||....
T Consensus        95 ~i~~~-~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~id  137 (144)
T 2cxc_A           95 NVRER-NGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFG  137 (144)
T ss_dssp             EEEEE-TTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHC
T ss_pred             EEeec-CCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeC
Confidence            87666 89999999999888776666666666677788876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00