Citrus Sinensis ID: 032395

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MRDVGSDKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHICSRVLQDQSSLRLIIIEVGIILLSS
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEEEEEEccccccccEEEEEEEEEcccccEEEEcHHHHHHHHHHcccccccccEEEEEcccccHHHHHHHHcccEEEEEccccHHHHHHccccccccccccccccccEEEEEEEEEcEEccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHccccccEEEEEEEccccccccEEEEEEEEcccccccEEcHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHccEEEEccccccHHHHHHcccHHHHHHHHHHccccccEEEEEEEEEEccc
Coil and Loop (DISEMBL)
mrdvgsdkdedemtdkhMTTVSQHyfvdesdkpsfSIAIIENMKEEYGLFVWPCSVILAEYVWQqryrfsganvvelgagtslpglvaakvgsnvtltddsnRIELlmtslppshicsrvlqdqssLRLIIIEVGIILLSS
Flexible Loop (DISEMBL)
mrdvgsdkdedemtdkHMTTVSqhyfvdesdkPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHICSrvlqdqsslRLIIIEVGIILLSS
Low Complexity Region (SEG)
MRDVGSDKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHICSRVLQDQSSLRLIIIEVGIILLSS
Disordered region (IsUnstruct)
***********************HYFVD****PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHICSRVLQDQSSLRLIIIEVGIILL**
Disordered Region (DISOPRED)
******************TTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHICSRVLQDQSSLRLIIIEVGIILLS*
Disordered Region (DISEMBL)
**************DKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHICSRVLQDQSSLRLIIIEVGIILLSS
Disordered Region (DISPRO)
***************KHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHICSRVLQDQSSLRLIIIEVGIILLS*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRDVGSDKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHICSRVLQDQSSLRLIIIEVGIILLSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	141	2.2.26 [Sep-21-2011]
Q6DJF8	234	Methyltransferase-like pr	N/A	no	0.553	0.333	0.410	2e-14
Q5RJL2	225	Methyltransferase-like pr	yes	no	0.524	0.328	0.435	3e-14
A2AA28	253	Methyltransferase-like pr	yes	no	0.539	0.300	0.407	6e-14
Q86XA0	190	Methyltransferase-like pr	yes	no	0.382	0.284	0.5	5e-12
Q8WXB1	218	Protein-lysine methyltran	no	no	0.496	0.321	0.386	4e-07
Q8CDZ2	244	Protein-lysine methyltran	no	no	0.397	0.229	0.396	8e-06
A4IGU3	215	Protein-lysine methyltran	no	no	0.404	0.265	0.403	8e-06
Q28IN4	224	Protein-lysine methyltran	no	no	0.347	0.218	0.428	1e-05
Q8R1C6	393	Methyltransferase-like pr	no	no	0.390	0.139	0.436	1e-05
A4FV98	226	Protein-lysine methyltran	no	no	0.446	0.278	0.4	2e-05

>sp|Q6DJF8|MET23_XENLA Methyltransferase-like protein 23 OS=Xenopus laevis GN=mettl23 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 51/78 (65%)

Query: 30  SDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAA 89
            D+    + I E +  +YG++VWPC+V+LA+Y+W  R   +   V+E+GAG SLPG++AA
Sbjct: 22  KDEQKMRVTIPEVLNCQYGMYVWPCAVVLAQYLWYHRKNLADKRVLEVGAGVSLPGILAA 81

Query: 90  KVGSNVTLTDDSNRIELL 107
           K G+ V L+D +   + L
Sbjct: 82  KCGAKVILSDSAEMPQCL 99

Probable methyltransferase.
Xenopus laevis (taxid: 8355)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q5RJL2|MET23_RAT Methyltransferase-like protein 23 OS=Rattus norvegicus GN=Mettl23 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 52/78 (66%), Gaps = 4/78 (5%)

Query: 26 FVDE----SDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGT 81
          F DE    +D     + + + +  +YG++VWPC+V+LA+Y+W  R    G  V+E+GAG 
Sbjct: 9  FRDEPGPGADPTVLEVRVPQVLHVQYGMYVWPCAVVLAQYLWFHRRVLPGKAVLEIGAGV 68

Query: 82 SLPGLVAAKVGSNVTLTD 99
          SLPG++AAK G+ VTL+D
Sbjct: 69 SLPGILAAKCGAKVTLSD 86

Probable methyltransferase.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A2AA28|MET23_MOUSE Methyltransferase-like protein 23 OS=Mus musculus GN=Mettl23 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 50/76 (65%)

Query: 27  VDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGL 86
           V   ++    + + + +  +YG++VWPC+V+LA+Y+W  R    G  V+E+GAG SLPG+
Sbjct: 42  VPGGNRAVLEVRVPQVLHVQYGMYVWPCAVVLAQYLWFHRRSLPGKAVLEVGAGVSLPGI 101

Query: 87  VAAKVGSNVTLTDDSN 102
           +AAK G+ V L+D S 
Sbjct: 102 LAAKCGAKVILSDSSE 117

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q86XA0|MET23_HUMAN Methyltransferase-like protein 23 OS=Homo sapiens GN=METTL23 PE=2 SV=3

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 40/54 (74%)

Query: 49  LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102
           ++VWPC+V+LA+Y+W  R    G  ++E+GAG SLPG++AAK G+ V L+D S 
Sbjct: 1   MYVWPCAVVLAQYLWFHRRSLPGKAILEIGAGVSLPGILAAKCGAEVILSDSSE 54

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8WXB1|MT21A_HUMAN Protein-lysine methyltransferase METTL21A OS=Homo sapiens GN=METTL21A PE=1 SV=2

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 5/75 (6%)

Query: 51  VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMT- 109
           VW  +++L+ Y+        G + VELGAGT L G+VAA +G++VT+TD    +E L + 
Sbjct: 46  VWDAAIVLSTYLEMGAVELRGRSAVELGAGTGLVGIVAALLGAHVTITDRKVALEFLKSN 105

Query: 110 ---SLPPSHICSRVL 121
              +LPP HI ++ +
Sbjct: 106 VQANLPP-HIQTKTV 119

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8CDZ2|MT21E_MOUSE Protein-lysine methyltransferase METTL21E OS=Mus musculus GN=Mettl21e PE=2 SV=1

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 2/58 (3%)

Query: 44  KEEYGLFVWPCSVILAEYV--WQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTD 99
           K+ YG FVWP +++L  ++    ++Y     NV+E+GAGT L  +VA+ +G+ V  TD
Sbjct: 61  KDCYGAFVWPSALVLCYFLETHAKQYNMVDKNVIEIGAGTGLVSIVASLLGARVIATD 118

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A4IGU3|MT21A_XENTR Protein-lysine methyltransferase METTL21A OS=Xenopus tropicalis GN=mettl21a PE=2 SV=1

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%)

Query: 51  VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELL 107
           VW  +++L  Y+  +      ++V+ELGAGT L G+VAA +G+ VT+TD    +E L
Sbjct: 46  VWDAALVLCMYLESEGIHLQNSSVIELGAGTGLVGIVAALLGAQVTITDRDLAMEFL 102

Probable methyltransferase.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q28IN4|MT21B_XENTR Protein-lysine methyltransferase METTL21B OS=Xenopus tropicalis GN=mettl21b PE=2 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 32/49 (65%)

Query: 51  VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTD 99
           VW  ++ L  Y  +Q+  F G  V+ELGAGT + G++ + +G +VTLTD
Sbjct: 57  VWDAALFLCGYFEEQKLDFKGKKVIELGAGTGIVGILVSLLGGHVTLTD 105

Probable methyltransferase.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8R1C6|MET22_MOUSE Methyltransferase-like protein 22 OS=Mus musculus GN=Mettl22 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 45  EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTD 99
           E+ G  VW  +++LA+Y+  +R  F G  V+ELGAGT L  +VAA +   V  TD
Sbjct: 169 EDVGKQVWRGALLLADYILFRRDLFQGCTVLELGAGTGLASIVAATMAHTVYCTD 223

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A4FV98|MT21B_BOVIN Protein-lysine methyltransferase METTL21B OS=Bos taurus GN=METTL21B PE=2 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 37  IAIIENMKEEYGLF--VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSN 94
           + I EN     G+   VW  ++ L  Y   Q   F G  V+ELGAGT + G++AA  G +
Sbjct: 40  LNITENFGSRLGVAARVWDAALSLCNYFESQNVDFRGKKVIELGAGTGIVGILAALQGGD 99

Query: 95  VTLTD 99
           VT+TD
Sbjct: 100 VTITD 104

Probable methyltransferase.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
356495346	203	PREDICTED: methyltransferase-like protei	0.737	0.512	0.700	1e-37
255580627	238	conserved hypothetical protein [Ricinus	0.723	0.428	0.728	6e-37
449434120	242	PREDICTED: methyltransferase-like protei	0.716	0.417	0.712	9e-37
449517136	242	PREDICTED: methyltransferase-like protei	0.716	0.417	0.702	2e-36
356540836	212	PREDICTED: methyltransferase-like protei	0.695	0.462	0.722	7e-36
225431332	236	PREDICTED: methyltransferase-like protei	0.730	0.436	0.675	5e-34
357483907	212	hypothetical protein MTR_5g022860 [Medic	0.737	0.490	0.622	6e-32
388519549	104	unknown [Lotus japonicus]	0.680	0.923	0.644	9e-31
297836997	194	predicted protein [Arabidopsis lyrata su	0.631	0.458	0.722	5e-30
357145015	240	PREDICTED: methyltransferase-like protei	0.638	0.375	0.695	2e-28

>gi|356495346|ref|XP_003516539.1| PREDICTED: methyltransferase-like protein 23-like [Glycine max]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/107 (70%), Positives = 92/107 (85%), Gaps = 3/107 (2%)

Query: 1   MRDVGSDKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAE 60
           M D   ++ +D +T   MTTVSQH+F D+S+ PSFSI+IIENMKE+YGLFVWPCSV+LAE
Sbjct: 1   MEDWNDEQCDDTLT---MTTVSQHFFGDDSETPSFSISIIENMKEDYGLFVWPCSVVLAE 57

Query: 61  YVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELL 107
           Y+WQ ++RFSGA VVELGAGTSLPGLVAAK+G+ VTLTDDS R+E+L
Sbjct: 58  YIWQHKHRFSGATVVELGAGTSLPGLVAAKLGARVTLTDDSTRLEVL 104

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580627|ref|XP_002531136.1| conserved hypothetical protein [Ricinus communis] gi|223529249|gb|EEF31221.1| conserved hypothetical protein [Ricinus communis]

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 75/103 (72%), Positives = 89/103 (86%), Gaps = 1/103 (0%)

Query: 5   GSDKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQ 64
           G D DE E + ++M+TVS H F D  +KP+FS++ IENMKEEYGLFVWPCSVILAEY+WQ
Sbjct: 3   GKDDDE-EPSHRNMSTVSHHVFGDGLEKPAFSVSTIENMKEEYGLFVWPCSVILAEYIWQ 61

Query: 65  QRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELL 107
           QR RFSGA+VVELGAGTSLPGL AAK+GS+VTLTDDSN +E+L
Sbjct: 62  QRERFSGADVVELGAGTSLPGLAAAKLGSHVTLTDDSNSLEVL 104

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434120|ref|XP_004134844.1| PREDICTED: methyltransferase-like protein 23-like [Cucumis sativus]

 Score =  158 bits (399), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 72/101 (71%), Positives = 87/101 (86%)

Query: 7   DKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQR 66
           D D D+  D  +TT S H F D++ K  FSIAIIENM+EEYGL+VWPCS+ILAEYVWQQ+
Sbjct: 10  DGDPDKPADPSLTTTSHHVFEDDAGKSVFSIAIIENMEEEYGLYVWPCSIILAEYVWQQK 69

Query: 67  YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELL 107
            RF+GANVVELGAGTSLPGLVAAK+G++VTLTDD+NR+E+L
Sbjct: 70  ARFAGANVVELGAGTSLPGLVAAKLGASVTLTDDANRVEVL 110

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517136|ref|XP_004165602.1| PREDICTED: methyltransferase-like protein 23-like [Cucumis sativus]

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 71/101 (70%), Positives = 87/101 (86%)

Query: 7   DKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQR 66
           D D D+  D  +TT S H F D++ K  FSIAIIENM+EEYGL++WPCS+ILAEYVWQQ+
Sbjct: 10  DGDPDKPADPSLTTTSHHVFEDDAGKSVFSIAIIENMEEEYGLYMWPCSIILAEYVWQQK 69

Query: 67  YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELL 107
            RF+GANVVELGAGTSLPGLVAAK+G++VTLTDD+NR+E+L
Sbjct: 70  ARFAGANVVELGAGTSLPGLVAAKLGASVTLTDDANRVEVL 110

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540836|ref|XP_003538890.1| PREDICTED: methyltransferase-like protein 23-like [Glycine max]

 Score =  155 bits (391), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 88/101 (87%), Gaps = 3/101 (2%)

Query: 7   DKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQR 66
           D ++D +T   MTTVSQH F D+S+ PSF I+IIENMK+EYGLF+WPCSV+LAEYVWQ +
Sbjct: 5   DWNDDSLT---MTTVSQHCFRDDSEAPSFYISIIENMKDEYGLFLWPCSVVLAEYVWQHK 61

Query: 67  YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELL 107
           +RFSGANVVELGAGTSLP LVAAK+G+ VTLTDDS R+E+L
Sbjct: 62  HRFSGANVVELGAGTSLPDLVAAKLGACVTLTDDSTRLEVL 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431332|ref|XP_002277720.1| PREDICTED: methyltransferase-like protein 23 [Vitis vinifera] gi|296084695|emb|CBI25837.3| unnamed protein product [Vitis vinifera]

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 73/108 (67%), Positives = 90/108 (83%), Gaps = 5/108 (4%)

Query: 5   GSDKDE----DEMTDKHMTTVSQHYFVDESDKP-SFSIAIIENMKEEYGLFVWPCSVILA 59
           GSD+DE       +D+HMTT S+H+F +  D   +FSI IIE+MKE+YGLFVWPCSV+LA
Sbjct: 3   GSDEDEPAGASSQSDQHMTTTSRHHFGNARDSGDAFSITIIESMKEDYGLFVWPCSVVLA 62

Query: 60  EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELL 107
           EYVWQQR RF GA+VVELGAGTSLPGLVAAK+GS+VTLTD++ R+E+L
Sbjct: 63  EYVWQQRSRFLGASVVELGAGTSLPGLVAAKLGSDVTLTDNAVRLEVL 110

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483907|ref|XP_003612240.1| hypothetical protein MTR_5g022860 [Medicago truncatula] gi|355513575|gb|AES95198.1| hypothetical protein MTR_5g022860 [Medicago truncatula]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 84/106 (79%), Gaps = 2/106 (1%)

Query: 2   RDVGSDKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEY 61
            D   + D D      M+T+SQH F D+S+  + +I+IIENM E+YGL+VWP +VIL EY
Sbjct: 4   NDRNEESDSDNTATMTMSTISQHNFNDDSE--TLTISIIENMSEDYGLYVWPSAVILGEY 61

Query: 62  VWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELL 107
           +WQ+++RFSGANVVELGAGT LPGLVAAKVG+NVTLTDDS R+E+L
Sbjct: 62  IWQEKHRFSGANVVELGAGTCLPGLVAAKVGANVTLTDDSTRLEVL 107

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519549|gb|AFK47836.1| unknown [Lotus japonicus]

 Score =  138 bits (347), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 67/104 (64%), Positives = 83/104 (79%), Gaps = 8/104 (7%)

Query: 7   DKDEDEMTD---KHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVW 63
           +KD +  +D     MTT+S+H + D+       I++IENMKE+YGLFVWPCSVILAEYVW
Sbjct: 3   EKDRETQSDDTVSTMTTISRHTYGDD-----LCISVIENMKEDYGLFVWPCSVILAEYVW 57

Query: 64  QQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELL 107
           Q R RFSGA V+ELGAGTSLPGLVAAK+G+ VTLTDDS+R+E+L
Sbjct: 58  QHRERFSGATVLELGAGTSLPGLVAAKLGARVTLTDDSSRLEVL 101

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836997|ref|XP_002886380.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332221|gb|EFH62639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 65/90 (72%), Positives = 79/90 (87%), Gaps = 1/90 (1%)

Query: 19  TTVSQHYFVDESD-KPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVEL 77
           TT+SQH F  + D + S SI++IEN+KEEYGLFVWPCSVILAEYVWQQR RF  ++V+EL
Sbjct: 5   TTISQHDFYGDGDSETSISISVIENLKEEYGLFVWPCSVILAEYVWQQRSRFRHSSVLEL 64

Query: 78  GAGTSLPGLVAAKVGSNVTLTDDSNRIELL 107
           GAGTSLPGLVAAKVG+NVTLTDD+++ E+L
Sbjct: 65  GAGTSLPGLVAAKVGANVTLTDDASKPEVL 94

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357145015|ref|XP_003573493.1| PREDICTED: methyltransferase-like protein 23-like [Brachypodium distachyon]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 75/92 (81%), Gaps = 2/92 (2%)

Query: 18  MTTVSQHYFVDESDKPS--FSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVV 75
           MTTVS+HYF   S        + I+ENM+E+YG+FVWPCSVILAEYVWQQR RFSG+ VV
Sbjct: 23  MTTVSRHYFGGASSDRDHHLRVDILENMQEDYGMFVWPCSVILAEYVWQQRPRFSGSAVV 82

Query: 76  ELGAGTSLPGLVAAKVGSNVTLTDDSNRIELL 107
           ELGAGTSLPGLVAAKVG+NVTLTD ++  E+L
Sbjct: 83  ELGAGTSLPGLVAAKVGANVTLTDIADNTEVL 114

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
TAIR|locus:504956172	196	AT1G63855 "AT1G63855" [Arabido	0.624	0.448	0.696	7.1e-29
RGD|1306284	225	Mettl23 "methyltransferase lik	0.496	0.311	0.442	4.9e-14
MGI|MGI:1921569	253	Mettl23 "methyltransferase lik	0.531	0.296	0.413	1e-13
UNIPROTKB|Q86XA0	190	METTL23 "Methyltransferase-lik	0.375	0.278	0.509	5e-12
ZFIN|ZDB-GENE-060825-19	223	mettl21d "methyltransferase li	0.638	0.403	0.363	9.4e-11
UNIPROTKB|A4FV42	218	METTL21A "Protein-lysine methy	0.460	0.298	0.442	6.6e-09
RGD|1311824	218	Mettl21a "methyltransferase li	0.496	0.321	0.4	8.9e-09
UNIPROTKB|Q8WXB1	218	METTL21A "Protein-lysine methy	0.496	0.321	0.386	2e-08
MGI|MGI:1914349	218	Mettl21a "methyltransferase li	0.460	0.298	0.428	2.7e-08
ZFIN|ZDB-GENE-050320-145	218	mettl21a "methyltransferase li	0.432	0.279	0.409	3.5e-08

TAIR|locus:504956172 AT1G63855 "AT1G63855" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 62/89 (69%), Positives = 74/89 (83%)

Query:    19 TTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELG 78
             TT+SQH F    D  +  I+IIEN+KEEYGLFVWPCSVILAEYVWQ R RF  ++++ELG
Sbjct:     7 TTISQHNFYGAGDSET-CISIIENLKEEYGLFVWPCSVILAEYVWQHRSRFRDSSILELG 65

Query:    79 AGTSLPGLVAAKVGSNVTLTDDSNRIELL 107
             AGTSLPGLVAAKVG+NVTLTDD+ + E+L
Sbjct:    66 AGTSLPGLVAAKVGANVTLTDDATKPEVL 94

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1306284 Mettl23 "methyltransferase like 23" [Rattus norvegicus (taxid:10116)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 31/70 (44%), Positives = 49/70 (70%)

Query:    30 SDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAA 89
             +D     + + + +  +YG++VWPC+V+LA+Y+W  R    G  V+E+GAG SLPG++AA
Sbjct:    17 ADPTVLEVRVPQVLHVQYGMYVWPCAVVLAQYLWFHRRVLPGKAVLEIGAGVSLPGILAA 76

Query:    90 KVGSNVTLTD 99
             K G+ VTL+D
Sbjct:    77 KCGAKVTLSD 86

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1921569 Mettl23 "methyltransferase like 23" [Mus musculus (taxid:10090)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 31/75 (41%), Positives = 50/75 (66%)

Query:    27 VDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGL 86
             V   ++    + + + +  +YG++VWPC+V+LA+Y+W  R    G  V+E+GAG SLPG+
Sbjct:    42 VPGGNRAVLEVRVPQVLHVQYGMYVWPCAVVLAQYLWFHRRSLPGKAVLEVGAGVSLPGI 101

Query:    87 VAAKVGSNVTLTDDS 101
             +AAK G+ V L+D S
Sbjct:   102 LAAKCGAKVILSDSS 116

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|Q86XA0 METTL23 "Methyltransferase-like protein 23" [Homo sapiens (taxid:9606)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 27/53 (50%), Positives = 40/53 (75%)

Query:    49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDS 101
             ++VWPC+V+LA+Y+W  R    G  ++E+GAG SLPG++AAK G+ V L+D S
Sbjct:     1 MYVWPCAVVLAQYLWFHRRSLPGKAILEIGAGVSLPGILAAKCGAEVILSDSS 53

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-060825-19 mettl21d "methyltransferase like 21D" [Danio rerio (taxid:7955)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 36/99 (36%), Positives = 59/99 (59%)

Query:    22 SQHYFVDESDKPSFSIA-IIENMKEEYGLFVWPCSVILAEYVWQQRY--------RFSGA 72
             S+ YFV E +K   S+  + +  K + G  VW  +++L++Y+  +++         +S  
Sbjct:     7 SEDYFVREIEKNDGSVLRMYQCSKGDVGCVVWDAAIVLSKYLETEQFCSIGSGVSMWSSK 66

Query:    73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSL 111
             N++ELGAGT L GLVAA +G+NVTLTD  +   LL  ++
Sbjct:    67 NIIELGAGTGLVGLVAASLGANVTLTDLEDLQPLLQLNI 105

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|A4FV42 METTL21A "Protein-lysine methyltransferase METTL21A" [Bos taurus (taxid:9913)]

 Score = 133 (51.9 bits), Expect = 6.6e-09, P = 6.6e-09
 Identities = 31/70 (44%), Positives = 43/70 (61%)

Query:    51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTS 110
             VW  +V+LA Y+        G + VELGAGT L G+VAA +G++VT+TD    +E L ++
Sbjct:    46 VWDAAVVLATYLEMGTVELRGCSAVELGAGTGLVGIVAALLGAHVTITDRKVALEFLKSN 105

Query:   111 ----LPPSHI 116
                 LPP HI
Sbjct:   106 VQANLPP-HI 114

GO:0018022 "peptidyl-lysine methylation" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0006479 "protein methylation" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

RGD|1311824 Mettl21a "methyltransferase like 21A" [Rattus norvegicus (taxid:10116)]

 Score = 132 (51.5 bits), Expect = 8.9e-09, P = 8.9e-09
 Identities = 30/75 (40%), Positives = 46/75 (61%)

Query:    51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTS 110
             VW  +++L+ Y+        G + VELGAGT L G+VAA +G++VT+TD    +E L ++
Sbjct:    46 VWDAAIVLSTYLEMGAVELRGCSAVELGAGTGLVGIVAALLGAHVTITDRKVALEFLKSN 105

Query:   111 ----LPPSHICSRVL 121
                 LPP HI  +V+
Sbjct:   106 VEANLPP-HIQPKVV 119

GO:0006479 "protein methylation" evidence=ISO

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0018022 "peptidyl-lysine methylation" evidence=ISO

UNIPROTKB|Q8WXB1 METTL21A "Protein-lysine methyltransferase METTL21A" [Homo sapiens (taxid:9606)]

 Score = 129 (50.5 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 29/75 (38%), Positives = 46/75 (61%)

Query:    51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTS 110
             VW  +++L+ Y+        G + VELGAGT L G+VAA +G++VT+TD    +E L ++
Sbjct:    46 VWDAAIVLSTYLEMGAVELRGRSAVELGAGTGLVGIVAALLGAHVTITDRKVALEFLKSN 105

Query:   111 ----LPPSHICSRVL 121
                 LPP HI ++ +
Sbjct:   106 VQANLPP-HIQTKTV 119

GO:0016021 "integral to membrane" evidence=IEA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IDA

GO:0006479 "protein methylation" evidence=IDA

GO:0018022 "peptidyl-lysine methylation" evidence=IDA

MGI|MGI:1914349 Mettl21a "methyltransferase like 21A" [Mus musculus (taxid:10090)]

 Score = 128 (50.1 bits), Expect = 2.7e-08, P = 2.7e-08
 Identities = 30/70 (42%), Positives = 42/70 (60%)

Query:    51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTS 110
             VW  +V+L+ Y+        G + VELGAGT L G+VAA +G+ VT+TD    +E L ++
Sbjct:    46 VWDAAVVLSMYLEMGAVELRGCSAVELGAGTGLVGIVAALLGAQVTITDRKVALEFLKSN 105

Query:   111 ----LPPSHI 116
                 LPP HI
Sbjct:   106 VEANLPP-HI 114

GO:0005575 "cellular_component" evidence=ND

GO:0006479 "protein methylation" evidence=ISO

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0018022 "peptidyl-lysine methylation" evidence=ISO

GO:0032259 "methylation" evidence=IEA

ZFIN|ZDB-GENE-050320-145 mettl21a "methyltransferase like 21A" [Danio rerio (taxid:7955)]

 Score = 127 (49.8 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 25/61 (40%), Positives = 38/61 (62%)

Query:    51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTS 110
             VW  +V+L  ++   +    G  V+ELGAGT L G+VAA +G+NVT+TD    +E L  +
Sbjct:    46 VWDAAVVLCMFLEMGKVDLKGKRVIELGAGTGLVGIVAALLGANVTITDREPALEFLTAN 105

Query:   111 L 111
             +
Sbjct:   106 V 106

GO:0006479 "protein methylation" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00011735001 SubName- Full=Chromosome chr4 scaffold_333, whole genome shotgun sequence; (236 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	141
pfam10294	170	pfam10294, Methyltransf_16, Putative methyltransfe	8e-13

>gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase

 Score = 61.6 bits (150), Expect = 8e-13
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 6/95 (6%)

Query: 32  KPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQ----QRYRFSGANVVELGAGTSLPGLV 87
             S  + I E+     G  VW  +V+L++Y+           SG NV+ELG+GT L G+ 
Sbjct: 2   LDSPELKIEEDTGNGIGGHVWDAAVVLSKYLEMKITPGGNNLSGLNVLELGSGTGLVGIA 61

Query: 88  AAKV--GSNVTLTDDSNRIELLMTSLPPSHICSRV 120
            A +  G++VT+TD    IEL+  ++  + + S+V
Sbjct: 62  VALLLPGASVTITDLEEAIELMKKNIELNGLSSKV 96

Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.83
COG3897	218	Predicted methyltransferase [General function pred	99.43
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.27
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.27
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	99.2
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.19
KOG2920	282	consensus Predicted methyltransferase [General fun	98.94
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.81
KOG3201	201	consensus Uncharacterized conserved protein [Funct	98.66
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.65
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.59
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.58
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.45
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.39
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.33
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.28
PRK04148	134	hypothetical protein; Provisional	98.26
COG2890	280	HemK Methylase of polypeptide chain release factor	98.17
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.15
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.13
COG4123	248	Predicted O-methyltransferase [General function pr	98.11
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.11
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.1
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.1
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.07
PRK11207	197	tellurite resistance protein TehB; Provisional	98.04
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.03
PRK14968	188	putative methyltransferase; Provisional	98.0
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.99
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	97.97
PRK14967	223	putative methyltransferase; Provisional	97.94
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.94
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	97.93
PRK12335	287	tellurite resistance protein TehB; Provisional	97.93
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	97.88
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	97.88
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	97.88
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.88
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.87
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.87
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	97.84
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	97.83
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.79
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	97.79
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	97.77
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.76
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.76
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	97.76
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	97.75
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	97.75
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	97.75
PRK10258	251	biotin biosynthesis protein BioC; Provisional	97.75
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.73
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.73
PRK07402	196	precorrin-6B methylase; Provisional	97.7
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.69
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.68
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.68
PLN02672	1082	methionine S-methyltransferase	97.66
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	97.65
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	97.65
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	97.65
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	97.64
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	97.63
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	97.63
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.61
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	97.61
TIGR00452	314	methyltransferase, putative. Known examples to dat	97.61
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	97.61
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	97.6
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.59
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	97.57
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	97.56
PLN02244	340	tocopherol O-methyltransferase	97.56
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	97.51
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.51
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.5
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	97.5
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	97.5
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	97.48
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.48
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.46
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.46
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.45
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	97.45
TIGR00438	188	rrmJ cell division protein FtsJ.	97.44
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.42
PRK05785	226	hypothetical protein; Provisional	97.41
PRK04266	226	fibrillarin; Provisional	97.41
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	97.4
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.39
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.39
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	97.35
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	97.35
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.35
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	97.34
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.33
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.32
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	97.32
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.31
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	97.3
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.29
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.29
TIGR00740	239	methyltransferase, putative. A simple BLAST search	97.28
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.25
COG4976	287	Predicted methyltransferase (contains TPR repeat)	97.25
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.24
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	97.23
PRK06202	232	hypothetical protein; Provisional	97.2
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	97.18
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.18
PLN02336	475	phosphoethanolamine N-methyltransferase	97.18
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	97.15
PRK08317	241	hypothetical protein; Provisional	97.13
PHA03412	241	putative methyltransferase; Provisional	97.12
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	97.11
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.11
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	97.09
TIGR03438	301	probable methyltransferase. This model represents	97.03
PHA03411	279	putative methyltransferase; Provisional	97.01
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	97.01
KOG2904	328	consensus Predicted methyltransferase [General fun	96.99
PLN02233	261	ubiquinone biosynthesis methyltransferase	96.94
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	96.92
PLN02336	475	phosphoethanolamine N-methyltransferase	96.92
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	96.91
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.91
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	96.87
PRK06922	677	hypothetical protein; Provisional	96.84
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	96.84
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	96.84
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	96.82
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	96.82
PRK10901	427	16S rRNA methyltransferase B; Provisional	96.76
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	96.7
COG2265	432	TrmA SAM-dependent methyltransferases related to t	96.68
KOG1271	227	consensus Methyltransferases [General function pre	96.66
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	96.6
PLN02476	278	O-methyltransferase	96.59
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	96.56
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	96.54
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.52
PF13679	141	Methyltransf_32: Methyltransferase domain	96.5
COG4076	252	Predicted RNA methylase [General function predicti	96.5
KOG3010	261	consensus Methyltransferase [General function pred	96.49
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	96.48
PRK14904	445	16S rRNA methyltransferase B; Provisional	96.47
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	96.46
PLN02490	340	MPBQ/MSBQ methyltransferase	96.43
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	96.41
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	96.4
PRK14902	444	16S rRNA methyltransferase B; Provisional	96.39
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	96.39
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	96.37
KOG2899	288	consensus Predicted methyltransferase [General fun	96.36
PHA01634	156	hypothetical protein	96.32
PRK13256	226	thiopurine S-methyltransferase; Reviewed	96.3
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	96.29
COG0742	187	N6-adenine-specific methylase [DNA replication, re	96.27
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	96.18
PRK00811	283	spermidine synthase; Provisional	96.16
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	96.1
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	96.07
PRK14901	434	16S rRNA methyltransferase B; Provisional	95.98
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	95.93
PRK04457	262	spermidine synthase; Provisional	95.91
KOG2497	262	consensus Predicted methyltransferase [General fun	95.83
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	95.8
PRK14903	431	16S rRNA methyltransferase B; Provisional	95.79
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	95.71
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	95.68
COG2520	341	Predicted methyltransferase [General function pred	95.65
PTZ00146	293	fibrillarin; Provisional	95.57
KOG1501	636	consensus Arginine N-methyltransferase [General fu	95.54
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	95.53
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	95.49
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	95.31
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	95.18
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	95.13
COG4122	219	Predicted O-methyltransferase [General function pr	95.11
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	95.04
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	95.02
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	95.0
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	94.92
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	94.85
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	94.8
PLN02589	247	caffeoyl-CoA O-methyltransferase	94.7
PRK03612	521	spermidine synthase; Provisional	94.65
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	94.51
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	94.18
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	94.16
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	94.14
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	94.1
PLN03075	296	nicotianamine synthase; Provisional	93.87
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	93.59
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	93.34
PLN02366	308	spermidine synthase	93.24
PRK01581	374	speE spermidine synthase; Validated	92.89
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	92.6
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	92.28
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	92.25
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	91.95
KOG2361	264	consensus Predicted methyltransferase [General fun	91.87
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	91.81
KOG4300	252	consensus Predicted methyltransferase [General fun	91.8
COG1041	347	Predicted DNA modification methylase [DNA replicat	91.73
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	90.86
PLN02823	336	spermine synthase	90.66
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	90.3
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	90.1
PRK10742	250	putative methyltransferase; Provisional	89.47
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	89.45
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	88.94
COG2521	287	Predicted archaeal methyltransferase [General func	87.69
KOG1227	351	consensus Putative methyltransferase [General func	87.61
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	87.47
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	87.18
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	86.65
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	86.07
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	85.87
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	85.11
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	84.05
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	83.54
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	83.36
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	82.92
COG3129	292	Predicted SAM-dependent methyltransferase [General	82.83
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	82.03
KOG2078	495	consensus tRNA modification enzyme [RNA processing	81.37
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	80.96
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	80.04

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.83  E-value=1.4e-21  Score=146.64  Aligned_cols=98  Identities=31%  Similarity=0.449  Sum_probs=56.8

Q ss_pred             eehhhhhhcccccceeeeehhHHHHHHHHhh------hcccccccEEEecCCCCCchhhhhhc--CCceEEccCCcccee
Q 032395           35 FSIAIIENMKEEYGLFVWPCSVILAEYVWQQ------RYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEL  106 (141)
Q Consensus        35 ~~i~i~~~~~~~~g~~~W~as~~la~~l~~~------~~~~~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~  106 (141)
                      ..+.|.+.....+|.++||++++|++|+..+      ...+++++|||||||+|++||+++++  +++|++||+++   +
T Consensus         4 ~~l~i~e~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~---~   80 (173)
T PF10294_consen    4 KTLQIEEDWGDGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE---V   80 (173)
T ss_dssp             -------------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S----H
T ss_pred             cccccccccccCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch---h
Confidence            3488888888899999999999999999994      56789999999999999999999998  45999999997   6


Q ss_pred             ccccCCCchhhhhhhccCCcceEEEEEEeEE
Q 032395          107 LMTSLPPSHICSRVLQDQSSLRLIIIEVGII  137 (141)
Q Consensus       107 l~n~~~N~~~n~~~~~~~~~v~v~~l~WG~~  137 (141)
                      +++++.|+..|..  ....++.+..|+||..
T Consensus        81 l~~l~~Ni~~N~~--~~~~~v~v~~L~Wg~~  109 (173)
T PF10294_consen   81 LELLRRNIELNGS--LLDGRVSVRPLDWGDE  109 (173)
T ss_dssp             HHHHHHHHHTT----------EEEE--TTS-
T ss_pred             hHHHHHHHHhccc--cccccccCcEEEecCc
Confidence            7777777777754  2247899999999863

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=99.43  E-value=4e-14  Score=108.22  Aligned_cols=104  Identities=20%  Similarity=0.275  Sum_probs=82.4

Q ss_pred             cCcccCCcceeeeeeeecCCCCCCceehhhhhh-----cccccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCc
Q 032395           10 EDEMTDKHMTTVSQHYFVDESDKPSFSIAIIEN-----MKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLP   84 (141)
Q Consensus        10 ~~~~~~~~~~~~~~~~f~~~~~~~~~~i~i~~~-----~~~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~   84 (141)
                      ++-.|+++.+.++-+.-+..   +.+.-+..+.     .++.++...|.+++.+|+|+..+++.++||+|||+|+|+|++
T Consensus        17 ~~~~p~p~~Pe~rl~la~~~---~~l~~~~~e~l~~ig~pPpfwa~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLv   93 (218)
T COG3897          17 LGLLPPPHVPEIRLHLADEA---HELWDRAKEELRLIGLPPPFWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLV   93 (218)
T ss_pred             cccCCCCCCchhheeecccc---cchHhHhHHHHHhcCCCchHHHHHHhhhHHHHHHHhcCccccccceeeecccccChH
Confidence            55666777665554443332   3333333322     235588899999999999999999999999999999999999


Q ss_pred             hhhhhhcCC-ceEEccCCccceeccccCCCchhhh
Q 032395           85 GLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHICS  118 (141)
Q Consensus        85 ~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n~  118 (141)
                      +|++++.|+ .|+.+|+.+  -++.++..|++.|.
T Consensus        94 aIAaa~aGA~~v~a~d~~P--~~~~ai~lNa~ang  126 (218)
T COG3897          94 AIAAARAGAAEVVAADIDP--WLEQAIRLNAAANG  126 (218)
T ss_pred             HHHHHHhhhHHHHhcCCCh--HHHHHhhcchhhcc
Confidence            999999999 999999998  47889999999885

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.27  E-value=7.2e-13  Score=108.54  Aligned_cols=112  Identities=21%  Similarity=0.271  Sum_probs=76.9

Q ss_pred             ceeeeeeeecCCCCCCceehhhhhhccc-ccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ce
Q 032395           18 MTTVSQHYFVDESDKPSFSIAIIENMKE-EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NV   95 (141)
Q Consensus        18 ~~~~~~~~f~~~~~~~~~~i~i~~~~~~-~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~V   95 (141)
                      ......+||....     .+.|++.+-. ..-......      .+.++...|++|+|||+|||||++++++|+.|| +|
T Consensus        18 d~~~~~~Yf~sY~-----~~~iheeML~D~VRt~aYr~------~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V   86 (346)
T KOG1499|consen   18 DMTSDDYYFDSYA-----HFGIHEEMLKDSVRTLAYRN------AILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKV   86 (346)
T ss_pred             ccchhhhhhhhhh-----chHHHHHHHhhhhhHHHHHH------HHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceE
Confidence            3346667777763     2677777632 222222222      277778899999999999999999999999999 99


Q ss_pred             EEccCCccceecc-ccCCCchhh------hhhh--cc-CCcceEEEEEE-eEEeec
Q 032395           96 TLTDDSNRIELLM-TSLPPSHIC------SRVL--QD-QSSLRLIIIEV-GIILLS  140 (141)
Q Consensus        96 v~tD~~~~~~~l~-n~~~N~~~n------~~~~--~~-~~~v~v~~l~W-G~~ll~  140 (141)
                      ++.|.++..+... .++.|...+      +++.  .. ..+|++++.+| ||+||.
T Consensus        87 ~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~  142 (346)
T KOG1499|consen   87 YAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLY  142 (346)
T ss_pred             EEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHHH
Confidence            9999998543322 334443322      2221  11 48999999999 999984

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.27  E-value=9e-13  Score=106.70  Aligned_cols=80  Identities=20%  Similarity=0.256  Sum_probs=66.4

Q ss_pred             CceehhhhhhcccccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccC
Q 032395           33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSL  111 (141)
Q Consensus        33 ~~~~i~i~~~~~~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~  111 (141)
                      ..+.|.|.+.+..++|.|  |++....++|.+.  ..++++|||+|||||+++|+++++|| +|+++|+++  .++++++
T Consensus       128 ~~~~I~idPg~AFGTG~H--~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp--~Av~~a~  201 (295)
T PF06325_consen  128 DEIVIEIDPGMAFGTGHH--PTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDP--LAVEAAR  201 (295)
T ss_dssp             TSEEEEESTTSSS-SSHC--HHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSC--HHHHHHH
T ss_pred             CcEEEEECCCCcccCCCC--HHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCH--HHHHHHH
Confidence            456688888888888887  7888888888775  45889999999999999999999999 899999999  4777888


Q ss_pred             CCchhhh
Q 032395          112 PPSHICS  118 (141)
Q Consensus       112 ~N~~~n~  118 (141)
                      .|+.+|.
T Consensus       202 ~N~~~N~  208 (295)
T PF06325_consen  202 ENAELNG  208 (295)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            8888773

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=99.20  E-value=9.9e-12  Score=98.32  Aligned_cols=100  Identities=28%  Similarity=0.427  Sum_probs=76.3

Q ss_pred             ehhhhhhcccccceeeeehhHHHHHHHHhhhc------ccc-----cccEEEecCCCCCchhhhhh-cCCceEEccCCcc
Q 032395           36 SIAIIENMKEEYGLFVWPCSVILAEYVWQQRY------RFS-----GANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNR  103 (141)
Q Consensus        36 ~i~i~~~~~~~~g~~~W~as~~la~~l~~~~~------~~~-----~~~vLELG~GtGl~~l~~a~-~ga~Vv~tD~~~~  103 (141)
                      ...+..........++|+++..++.++...+.      .+.     .++|||||+|||++|+.+|+ .+++|+.||... 
T Consensus        41 ~~~~~~~~~~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-  119 (248)
T KOG2793|consen   41 KTVIESGLEQGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPK-  119 (248)
T ss_pred             eeecccccccceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchh-
Confidence            34555555678899999999999999888655      222     34699999999999999998 677999999998 


Q ss_pred             ceeccccCCCchhhhhh-hccCCcceEEEEEEeEEe
Q 032395          104 IELLMTSLPPSHICSRV-LQDQSSLRLIIIEVGIIL  138 (141)
Q Consensus       104 ~~~l~n~~~N~~~n~~~-~~~~~~v~v~~l~WG~~l  138 (141)
                        .+.++..|...|... .....++.|.+|.||..+
T Consensus       120 --~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~  153 (248)
T KOG2793|consen  120 --VVENLKFNRDKNNIALNQLGGSVIVAILVWGNAL  153 (248)
T ss_pred             --hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcc
Confidence              455555665555322 333569999999999654

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=1e-11  Score=100.58  Aligned_cols=78  Identities=18%  Similarity=0.270  Sum_probs=63.1

Q ss_pred             ceehhhhhhcccccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCC
Q 032395           34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLP  112 (141)
Q Consensus        34 ~~~i~i~~~~~~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~  112 (141)
                      .+.|+|.+.+..++|+|  |++....+++.+.  ..++++|||+|||+|+++|+++++|| +|+++|+++.  +++..+.
T Consensus       130 ~~~i~lDPGlAFGTG~H--pTT~lcL~~Le~~--~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~--AV~aa~e  203 (300)
T COG2264         130 ELNIELDPGLAFGTGTH--PTTSLCLEALEKL--LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQ--AVEAARE  203 (300)
T ss_pred             ceEEEEccccccCCCCC--hhHHHHHHHHHHh--hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHH--HHHHHHH
Confidence            66688888877888876  7777777777664  33899999999999999999999999 7999999994  5665566


Q ss_pred             Cchhh
Q 032395          113 PSHIC  117 (141)
Q Consensus       113 N~~~n  117 (141)
                      |+.+|
T Consensus       204 Na~~N  208 (300)
T COG2264         204 NARLN  208 (300)
T ss_pred             HHHHc
Confidence            66666

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=98.94  E-value=1.4e-09  Score=87.23  Aligned_cols=72  Identities=39%  Similarity=0.611  Sum_probs=60.0

Q ss_pred             ccceeeeehhHHHHHHHHhh---hcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc-c--eeccccCCCchhh
Q 032395           46 EYGLFVWPCSVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR-I--ELLMTSLPPSHIC  117 (141)
Q Consensus        46 ~~g~~~W~as~~la~~l~~~---~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~-~--~~l~n~~~N~~~n  117 (141)
                      ..|+++|.|+..|..++...   .-.|.+|+|||||||+|++++.+.+.|+ .|.++|++.. +  ..+.|+..|+..+
T Consensus        89 EGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~  167 (282)
T KOG2920|consen   89 EGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAG  167 (282)
T ss_pred             ecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhh
Confidence            57999999999999999865   4567999999999999999999999996 9999999983 1  2344666666555

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=1.8e-09  Score=82.30  Aligned_cols=71  Identities=28%  Similarity=0.352  Sum_probs=57.1

Q ss_pred             ccccceeeeehhHHHHHHHHhh---hcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchh
Q 032395           44 KEEYGLFVWPCSVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        44 ~~~~g~~~W~as~~la~~l~~~---~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      .+..++.++.+..-+|.++...   ...+.|+.|+|||||||++++.++.+|+ +|++.|.++  +.++.++.|+..
T Consensus        16 ~p~~~LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~--~a~ei~r~N~~~   90 (198)
T COG2263          16 NPKLGLEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDP--EALEIARANAEE   90 (198)
T ss_pred             CCCccceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCH--HHHHHHHHHHHh
Confidence            4566677777777777776553   4567899999999999999999999998 999999999  577777777653

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=2.4e-09  Score=80.20  Aligned_cols=70  Identities=29%  Similarity=0.437  Sum_probs=58.7

Q ss_pred             ccc-eeeeehhHHHHHHHHhhhcccccccEEEecCC-CCCchhhhhhcCC--ceEEccCCccceeccccCCCchhh
Q 032395           46 EYG-LFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        46 ~~g-~~~W~as~~la~~l~~~~~~~~~~~vLELG~G-tGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ++| ..+||+..+||.++.+++..+.|++|+|||.| ||+.|+++|....  .|.+||-++  +.++|+++-..+|
T Consensus         4 ntgnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne--~svrnv~ki~~~n   77 (201)
T KOG3201|consen    4 NTGNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNE--ESVRNVEKIRNSN   77 (201)
T ss_pred             CCCcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCH--HHHHHHHHHHhcc
Confidence            344 47999999999999999999999999999999 9999999887643  899999998  5677665544444

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.65  E-value=8.3e-09  Score=76.79  Aligned_cols=59  Identities=24%  Similarity=0.315  Sum_probs=48.3

Q ss_pred             ehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC--ceEEccCCccceeccccCCCchhh
Q 032395           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        53 ~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      +++..|++++..+    ++++|||+|||+|.+++.+++.+.  +|+++|.++  .+++.++.|+..|
T Consensus        18 ~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~--~a~~~a~~n~~~n   78 (170)
T PF05175_consen   18 AGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINP--DALELAKRNAERN   78 (170)
T ss_dssp             HHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBH--HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHHhc
Confidence            3667788888765    778999999999999999999876  599999999  4677666766665

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.59  E-value=1.3e-08  Score=80.15  Aligned_cols=79  Identities=19%  Similarity=0.290  Sum_probs=59.2

Q ss_pred             CceehhhhhhcccccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccC
Q 032395           33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSL  111 (141)
Q Consensus        33 ~~~~i~i~~~~~~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~  111 (141)
                      ....+.|.+.+..++|.  ++++..+.+.+...  ..++++|||+|||+|++++.+++.|+ +|+++|+++.  .++.++
T Consensus        86 ~~~~i~i~p~~afgtg~--h~tt~~~l~~l~~~--~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~--~l~~A~  159 (250)
T PRK00517         86 DEINIELDPGMAFGTGT--HPTTRLCLEALEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQ--AVEAAR  159 (250)
T ss_pred             CeEEEEECCCCccCCCC--CHHHHHHHHHHHhh--cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHH--HHHHHH
Confidence            34556777766667776  56777777776653  34789999999999999999999888 6999999994  566566


Q ss_pred             CCchhh
Q 032395          112 PPSHIC  117 (141)
Q Consensus       112 ~N~~~n  117 (141)
                      .|...|
T Consensus       160 ~n~~~~  165 (250)
T PRK00517        160 ENAELN  165 (250)
T ss_pred             HHHHHc
Confidence            665544

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.58  E-value=1.6e-08  Score=81.28  Aligned_cols=79  Identities=16%  Similarity=0.268  Sum_probs=58.0

Q ss_pred             CceehhhhhhcccccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccC
Q 032395           33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSL  111 (141)
Q Consensus        33 ~~~~i~i~~~~~~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~  111 (141)
                      ....+.|.+.+..++|.+  ++.....+++...  ..++++|||+|||+|++++.+++.|+ +|+++|+++.  .++.++
T Consensus       126 ~~~~i~ldpg~aFgtG~h--~tt~l~l~~l~~~--~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~--al~~a~  199 (288)
T TIGR00406       126 DALIIMLDPGLAFGTGTH--PTTSLCLEWLEDL--DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPL--AVESAR  199 (288)
T ss_pred             CcEEEEECCCCcccCCCC--HHHHHHHHHHHhh--cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHH--HHHHHH
Confidence            345566777766777765  6666555555543  34789999999999999999999987 8999999984  555555


Q ss_pred             CCchhh
Q 032395          112 PPSHIC  117 (141)
Q Consensus       112 ~N~~~n  117 (141)
                      .|+..|
T Consensus       200 ~n~~~n  205 (288)
T TIGR00406       200 KNAELN  205 (288)
T ss_pred             HHHHHc
Confidence            555544

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=5e-08  Score=72.08  Aligned_cols=69  Identities=16%  Similarity=0.110  Sum_probs=57.5

Q ss_pred             cccceeeeehhHHHHHHHHh----hhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCch
Q 032395           45 EEYGLFVWPCSVILAEYVWQ----QRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        45 ~~~g~~~W~as~~la~~l~~----~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      +..++..+++...+|.-|..    ...+++||.+++||||||.+++..+..++ .|++.|+++  ++|+...+|++
T Consensus        19 pk~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdp--eALEIf~rNae   92 (185)
T KOG3420|consen   19 PKLLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDP--EALEIFTRNAE   92 (185)
T ss_pred             cchhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCH--HHHHHHhhchH
Confidence            46777788898888886544    24578999999999999999988888888 899999999  68887777764

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.39  E-value=5.3e-08  Score=66.46  Aligned_cols=43  Identities=28%  Similarity=0.386  Sum_probs=35.3

Q ss_pred             ccccEEEecCCCCCchhhhhh--cCCceEEccCCccceeccccCCCc
Q 032395           70 SGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~--~ga~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      ++++|||||||+|..++.+++  .+++|+++|+++.  .++.+++|.
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~--~~~~a~~~~   45 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPE--MLEIARERA   45 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHH--HHHHHHHHH
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHH
Confidence            578999999999999999999  6779999999994  455444444

...

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.33  E-value=1.8e-07  Score=77.39  Aligned_cols=74  Identities=22%  Similarity=0.385  Sum_probs=54.5

Q ss_pred             hhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceecc-ccCCCchhhhhh---------hccCCcceEEEE
Q 032395           64 QQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLM-TSLPPSHICSRV---------LQDQSSLRLIII  132 (141)
Q Consensus        64 ~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~-n~~~N~~~n~~~---------~~~~~~v~v~~l  132 (141)
                      .+..+|++|.|||+|||+|++++++|+.|| +|.+.+-++..+..+ .++.| .+..++         +..+.+++|++.
T Consensus       171 ~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N-~~~~rItVI~GKiEdieLPEk~DviIS  249 (517)
T KOG1500|consen  171 ENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASN-NLADRITVIPGKIEDIELPEKVDVIIS  249 (517)
T ss_pred             hcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcC-CccceEEEccCccccccCchhccEEEe
Confidence            345689999999999999999999999999 999999988544444 33444 333222         123678888888


Q ss_pred             EE-eEEe
Q 032395          133 EV-GIIL  138 (141)
Q Consensus       133 ~W-G~~l  138 (141)
                      += ||.|
T Consensus       250 EPMG~mL  256 (517)
T KOG1500|consen  250 EPMGYML  256 (517)
T ss_pred             ccchhhh
Confidence            75 7765

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.28  E-value=3.6e-07  Score=69.48  Aligned_cols=50  Identities=24%  Similarity=0.248  Sum_probs=41.3

Q ss_pred             hcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395           66 RYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        66 ~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ...+++++||||+||+|.+|+.++..|+ +|++.|.++  ++++.++.|++.|
T Consensus        45 ~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~--~a~~~~~~N~~~~   95 (189)
T TIGR00095        45 RPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDR--KANQTLKENLALL   95 (189)
T ss_pred             HHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHh
Confidence            3456899999999999999999999998 899999998  4566666665554

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK04148 hypothetical protein; Provisional

Probab=98.26  E-value=3.9e-07  Score=66.14  Aligned_cols=47  Identities=21%  Similarity=0.302  Sum_probs=40.2

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCC-chhhhhhcCCceEEccCCcc
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSL-PGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl-~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .+++|+..+....++++++|+|||+|. ++..+++.|.+|+++|.++.
T Consensus         3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148          3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHH
Confidence            478888776555577899999999997 88888899999999999994

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.17  E-value=8.6e-07  Score=71.36  Aligned_cols=44  Identities=23%  Similarity=0.305  Sum_probs=38.0

Q ss_pred             cEEEecCCCCCchhhhhhcCC--ceEEccCCccceeccccCCCchhhh
Q 032395           73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSHICS  118 (141)
Q Consensus        73 ~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~~n~  118 (141)
                      +|||+|||||.+++.+++.+.  +|+++|+++  ++++.++.|+..|+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~--~Al~~A~~Na~~~~  158 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISP--DALALARENAERNG  158 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCH--HHHHHHHHHHHHcC
Confidence            799999999999999998765  999999999  57777777776654

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.15  E-value=6.3e-07  Score=66.80  Aligned_cols=46  Identities=22%  Similarity=0.239  Sum_probs=36.8

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCch
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      ..++++|||+|||+|..++.++..+.+|+++|+++.  .++.++.|..
T Consensus        17 ~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~--~~~~a~~~~~   62 (179)
T TIGR00537        17 ELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPF--AVKELRENAK   62 (179)
T ss_pred             hcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHH--HHHHHHHHHH
Confidence            446789999999999999999988889999999994  4544444443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.13  E-value=2.2e-06  Score=67.25  Aligned_cols=54  Identities=20%  Similarity=0.089  Sum_probs=48.4

Q ss_pred             eeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        50 ~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      .+..++.-|..++......+++++|||+|||||..+..+++.|+ +|++.|.++.
T Consensus        55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~  109 (228)
T TIGR00478        55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYN  109 (228)
T ss_pred             hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHH
Confidence            56788889998888876678999999999999999999999988 8999999984

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.11  E-value=7.8e-07  Score=70.59  Aligned_cols=65  Identities=17%  Similarity=0.214  Sum_probs=49.9

Q ss_pred             cceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-C-CceEEccCCccceeccccCCCchhh
Q 032395           47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        47 ~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-g-a~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      .|++.=-.++.|+.|....    ..++|||||||+|++++++|+. . ++|++.|+.+  +..+.+++|+++|
T Consensus        25 ~~~~~~~DaiLL~~~~~~~----~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~--~~a~~A~~nv~ln   91 (248)
T COG4123          25 CGFRYGTDAILLAAFAPVP----KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQE--EAAEMAQRNVALN   91 (248)
T ss_pred             CccccccHHHHHHhhcccc----cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCH--HHHHHHHHHHHhC
Confidence            3444444788888887542    4789999999999999999987 5 5999999998  4555666776665

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.11  E-value=9.9e-07  Score=69.58  Aligned_cols=35  Identities=29%  Similarity=0.501  Sum_probs=33.6

Q ss_pred             cccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      +.|++|||+|||.|+++.-+|+.|++|++.|..+.
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~   92 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEK   92 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChH
Confidence            68999999999999999999999999999999984

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.10  E-value=9.1e-07  Score=74.07  Aligned_cols=45  Identities=22%  Similarity=0.331  Sum_probs=35.7

Q ss_pred             cccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCCchhh
Q 032395           71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      +.+|||||||+|.+++.+++..  ++|+++|.++.  +++.++.|+..|
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~--Av~~A~~N~~~n  275 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPM--AVASSRLNVETN  275 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHc
Confidence            4699999999999999998874  49999999983  555555555444

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.10  E-value=1.2e-06  Score=66.59  Aligned_cols=36  Identities=19%  Similarity=0.291  Sum_probs=32.6

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ..++.+|||+|||+|..++.+++.|.+|+++|+++.
T Consensus        28 ~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~   63 (195)
T TIGR00477        28 TVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPA   63 (195)
T ss_pred             cCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHH
Confidence            346789999999999999999999999999999984

Part of a tellurite-reducing operon tehA and tehB

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.07  E-value=2e-06  Score=68.70  Aligned_cols=35  Identities=29%  Similarity=0.477  Sum_probs=32.5

Q ss_pred             cccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      +.|++|||+|||+|+++.-+|+.|+.|+++|..+.
T Consensus        88 ~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~  122 (282)
T KOG1270|consen   88 LLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDD  122 (282)
T ss_pred             cCCceEEEeccCccccchhhHhhCCeeEeecccHH
Confidence            34688999999999999999999999999999985

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.04  E-value=1.4e-06  Score=66.32  Aligned_cols=36  Identities=25%  Similarity=0.284  Sum_probs=32.6

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ..++++|||+|||+|..++.+++.|++|++.|.++.
T Consensus        28 ~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~   63 (197)
T PRK11207         28 VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPM   63 (197)
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHH
Confidence            346789999999999999999999999999999984

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.03  E-value=2e-06  Score=69.88  Aligned_cols=57  Identities=23%  Similarity=0.261  Sum_probs=43.6

Q ss_pred             HHHHHhhhcccccccEEEecCCCCCchhhhhhcCC--ceEEccCCccceeccccCCCchhh
Q 032395           59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ++++.++-....+.+|||+|||.|.+|+.+++...  +++++|.+.  .+++..++|+..|
T Consensus       147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~--~Av~~ar~Nl~~N  205 (300)
T COG2813         147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNA--RAVESARKNLAAN  205 (300)
T ss_pred             HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCH--HHHHHHHHhHHHc
Confidence            33444443333444999999999999999999864  999999998  4777777777766

>PRK14968 putative methyltransferase; Provisional

Probab=98.00  E-value=2.1e-06  Score=63.46  Aligned_cols=55  Identities=29%  Similarity=0.306  Sum_probs=40.8

Q ss_pred             ehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCC
Q 032395           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        53 ~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      +-+..|++++..    .++++|||+|||+|..++.+++.+++|+++|.++.  .++.+++|
T Consensus        10 ~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~--~~~~a~~~   64 (188)
T PRK14968         10 EDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPY--AVECAKCN   64 (188)
T ss_pred             hhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHH--HHHHHHHH
Confidence            444555555543    47789999999999999998888889999999984  44444333

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.99  E-value=2.3e-06  Score=73.10  Aligned_cols=70  Identities=17%  Similarity=0.212  Sum_probs=44.0

Q ss_pred             ccccEEEecCCCCCchhhhhhcC-----C-ceEEccCCccc-eecccc-CCCch------hhhhhh--ccCCcceEEEEE
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG-----S-NVTLTDDSNRI-ELLMTS-LPPSH------ICSRVL--QDQSSLRLIIIE  133 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g-----a-~Vv~tD~~~~~-~~l~n~-~~N~~------~n~~~~--~~~~~v~v~~l~  133 (141)
                      +++.|+++|||+|.++.++++++     + +|++.+.++.. ..++.. +.|.-      .++.+.  ..+.+++|++.+
T Consensus       186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSE  265 (448)
T PF05185_consen  186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSE  265 (448)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE-
T ss_pred             cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEe
Confidence            57899999999999999887765     4 89999999852 334322 22211      112222  226799999999


Q ss_pred             E-eEEee
Q 032395          134 V-GIILL  139 (141)
Q Consensus       134 W-G~~ll  139 (141)
                      | |.|+.
T Consensus       266 lLGsfg~  272 (448)
T PF05185_consen  266 LLGSFGD  272 (448)
T ss_dssp             --BTTBT
T ss_pred             ccCCccc
Confidence            9 98874

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=97.97  E-value=2.3e-06  Score=64.62  Aligned_cols=36  Identities=25%  Similarity=0.594  Sum_probs=30.9

Q ss_pred             ccccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      .+++++|||+|||+|..++.++..+  ++|+++|.++.
T Consensus        40 ~~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~   77 (181)
T TIGR00138        40 YLDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHK   77 (181)
T ss_pred             hcCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHH
Confidence            3468999999999999999887664  38999999984

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK14967 putative methyltransferase; Provisional

Probab=97.94  E-value=2.7e-06  Score=65.66  Aligned_cols=59  Identities=24%  Similarity=0.231  Sum_probs=42.7

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCch
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      .+..|++.+... ...++.+|||+|||+|..++.+++.++ +|+++|+++.  .++.++.|..
T Consensus        21 ds~~l~~~l~~~-~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~--~l~~a~~n~~   80 (223)
T PRK14967         21 DTQLLADALAAE-GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRR--AVRSARLNAL   80 (223)
T ss_pred             cHHHHHHHHHhc-ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHH--HHHHHHHHHH
Confidence            345566666543 233578999999999999999998887 9999999983  4554444443

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.94  E-value=2.5e-06  Score=65.56  Aligned_cols=59  Identities=15%  Similarity=0.117  Sum_probs=41.7

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC---ceEEccCCccceeccccCCCc
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga---~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      .+..+...+......-++.+|||+|||+|..++.+++...   +|+++|.++.  .++.++.|+
T Consensus        61 ~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~--~~~~A~~~~  122 (215)
T TIGR00080        61 SAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPE--LAEKAERRL  122 (215)
T ss_pred             chHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHH
Confidence            4444555555544455788999999999999998888743   5999999984  444444443

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=97.93  E-value=4.2e-06  Score=62.76  Aligned_cols=45  Identities=20%  Similarity=0.169  Sum_probs=35.0

Q ss_pred             cccccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCCch
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      .++.+|||+|||+|.+++.+++.+  .+|+++|.++.  .++.+++|..
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~--~~~~a~~n~~   76 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPD--ALRLIKENRQ   76 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHH
Confidence            367899999999999999888764  38999999984  4544444443

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=97.93  E-value=3.7e-06  Score=67.44  Aligned_cols=42  Identities=24%  Similarity=0.276  Sum_probs=34.9

Q ss_pred             cccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCC
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLP  112 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~  112 (141)
                      +++++|||+|||+|..++.+++.|.+|+++|.++.  .++.++.
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~--ai~~~~~  160 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQ--SLENLQE  160 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHH--HHHHHHH
Confidence            45679999999999999999999999999999984  4444333

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=97.88  E-value=5.5e-06  Score=70.34  Aligned_cols=60  Identities=12%  Similarity=0.030  Sum_probs=43.5

Q ss_pred             HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ..|.+.+.......++.+|||+|||+|..++.+++.+++|+++|.++.  .++.++.|+..|
T Consensus       283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~--al~~A~~n~~~~  342 (443)
T PRK13168        283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEA--MVERARENARRN  342 (443)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHH--HHHHHHHHHHHc
Confidence            334444444333346789999999999999999998889999999994  565555555433

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=97.88  E-value=5.7e-06  Score=67.26  Aligned_cols=46  Identities=17%  Similarity=0.106  Sum_probs=37.4

Q ss_pred             cccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchh
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      .++.+|||+|||+|..++.+++.+++|+++|.++.  .++.++.|+..
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~--av~~A~~n~~~  217 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAE--AIACAKQSAAE  217 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHH--HHHHHHHHHHH
Confidence            35789999999999999999998889999999994  55555554433

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=97.88  E-value=4.3e-06  Score=61.87  Aligned_cols=42  Identities=19%  Similarity=0.192  Sum_probs=34.1

Q ss_pred             HHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        62 l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      +......-.+.+|||+|||+|.++..+++.+++|++.|+++.
T Consensus         5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~   46 (169)
T smart00650        5 IVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPR   46 (169)
T ss_pred             HHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHH
Confidence            333333346679999999999999999988779999999984

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=97.88  E-value=6.1e-06  Score=65.85  Aligned_cols=53  Identities=17%  Similarity=0.129  Sum_probs=40.1

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCC
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLP  112 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~  112 (141)
                      +++.+......-++.+|||+|||+|.++..+++.+.+|+++|.++.  .++.++.
T Consensus        30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~--~~~~~~~   82 (272)
T PRK00274         30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRD--LAPILAE   82 (272)
T ss_pred             HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHH--HHHHHHH
Confidence            4455555434447789999999999999999988889999999994  4443333

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.87  E-value=7.3e-06  Score=56.31  Aligned_cols=43  Identities=19%  Similarity=0.180  Sum_probs=33.1

Q ss_pred             cccccEEEecCCCCCchhhhhhc-C-CceEEccCCccceeccccCCC
Q 032395           69 FSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~-g-a~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      -++++|||+|||+|..++.+++. + .+|+++|+++.  .++.++.|
T Consensus        18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~--~~~~a~~~   62 (124)
T TIGR02469        18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPE--ALRLIERN   62 (124)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHH--HHHHHHHH
Confidence            35789999999999999988875 3 48999999984  44443333

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.87  E-value=6.4e-06  Score=62.67  Aligned_cols=34  Identities=32%  Similarity=0.615  Sum_probs=29.2

Q ss_pred             ccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..++.+++.  +++|+++|.++.
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~   80 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGK   80 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHH
Confidence            3789999999999999988763  459999999984

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=97.84  E-value=6.5e-06  Score=63.26  Aligned_cols=47  Identities=17%  Similarity=0.095  Sum_probs=35.6

Q ss_pred             cccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      .++++|||||||+|.+++.++..++ +|++.|.++  ++++.++.|+..+
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~--~a~~~a~~Nl~~~   99 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDR--AVAQQLIKNLATL   99 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHHHHh
Confidence            4678999999999999996555554 999999998  4555555555443

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=97.83  E-value=2e-05  Score=56.41  Aligned_cols=36  Identities=33%  Similarity=0.267  Sum_probs=32.3

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ..++++|||+|||+|..+..+++.|.+|+++|.++.
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~   55 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQ   55 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHH
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHH
Confidence            347889999999999999888889999999999984

...

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.79  E-value=1.2e-05  Score=65.94  Aligned_cols=35  Identities=29%  Similarity=0.367  Sum_probs=32.5

Q ss_pred             cccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .++.+|||+|||+|..++.+++.|++|+++|+++.
T Consensus       143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~  177 (315)
T PLN02585        143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAA  177 (315)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHH
Confidence            46789999999999999999999999999999995

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=97.79  E-value=5.5e-06  Score=68.01  Aligned_cols=35  Identities=29%  Similarity=0.535  Sum_probs=32.1

Q ss_pred             cccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      +++.+|||+|||+|.++..+++.|++|+++|.++.
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~  164 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDK  164 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHH
Confidence            46779999999999999999999999999999984

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=97.77  E-value=1.1e-05  Score=61.92  Aligned_cols=37  Identities=27%  Similarity=0.273  Sum_probs=31.4

Q ss_pred             cccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ..++..++||||||.|.-++++|+.|.+|++.|.++.
T Consensus        27 ~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~   63 (192)
T PF03848_consen   27 PLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPV   63 (192)
T ss_dssp             TTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHH
T ss_pred             hhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHH
Confidence            3457889999999999999999999999999999994

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.76  E-value=1.1e-05  Score=67.28  Aligned_cols=47  Identities=15%  Similarity=0.119  Sum_probs=38.2

Q ss_pred             cccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ..+++||||+||+|.+++.++..+++|+++|.++  +.++.++.|+..|
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~--~av~~a~~N~~~~  278 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIES--EAIACAQQSAQML  278 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCH--HHHHHHHHHHHHc
Confidence            3578999999999999999998888999999999  4566555555444

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.76  E-value=1.8e-05  Score=63.95  Aligned_cols=37  Identities=22%  Similarity=0.193  Sum_probs=32.9

Q ss_pred             cccccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           67 YRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      ..-+|++|||+|||.|-+++.+|+. |++|+++++++.
T Consensus        69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~  106 (283)
T COG2230          69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEE  106 (283)
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHH
Confidence            3347899999999999999999986 789999999985

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=97.76  E-value=1.2e-05  Score=61.60  Aligned_cols=36  Identities=33%  Similarity=0.456  Sum_probs=32.6

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ..++++|||+|||+|..+..+++.+++|+++|.++.
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~   88 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQ   88 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHH
Confidence            457899999999999999999888889999999984

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=97.75  E-value=5.4e-06  Score=60.06  Aligned_cols=34  Identities=26%  Similarity=0.382  Sum_probs=28.7

Q ss_pred             ccccEEEecCCCCCchhhhh-hc--CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAA-KV--GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a-~~--ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.++ +.  ++++++.|+++.
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~   39 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEE   39 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHH
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHH
Confidence            56899999999999999998 44  459999999994

...

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=97.75  E-value=8.8e-06  Score=66.83  Aligned_cols=45  Identities=13%  Similarity=0.099  Sum_probs=34.7

Q ss_pred             cccEEEecCCCCCchhhhhh-c-CCceEEccCCccceeccccCCCchhh
Q 032395           71 GANVVELGAGTSLPGLVAAK-V-GSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~-~-ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      +.++||+|||+|.+...++. . ++++++||+++  +.++.++.|++.|
T Consensus       115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~--~Al~~A~~Nv~~N  161 (321)
T PRK11727        115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDP--QALASAQAIISAN  161 (321)
T ss_pred             CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCH--HHHHHHHHHHHhc
Confidence            46899999999976655543 3 56999999998  4677777777666

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=97.75  E-value=5e-06  Score=57.08  Aligned_cols=43  Identities=23%  Similarity=0.203  Sum_probs=34.8

Q ss_pred             cccEEEecCCCCCchhhhhhcC-CceEEccCCccceeccccCCCch
Q 032395           71 GANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~g-a~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      |.+|||+|||+|...+.+++.+ .++++.|+++.  .++..+.|..
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~--~~~~a~~~~~   44 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPE--AVELARRNLP   44 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHH--HHHHHHHHCH
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHH--HHHHHHHHHH
Confidence            5689999999999999999998 69999999994  4444444443

...

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=97.75  E-value=1.5e-05  Score=62.14  Aligned_cols=34  Identities=26%  Similarity=0.204  Sum_probs=30.4

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..+..+++.+++|+++|+++.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~   75 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPP   75 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHH
Confidence            4678999999999988888888889999999984

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=97.73  E-value=1.3e-05  Score=63.55  Aligned_cols=47  Identities=19%  Similarity=0.162  Sum_probs=38.0

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .+++.+.......++++|||+|||+|.+++.+++.+.+|++.|+++.
T Consensus        16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~   62 (258)
T PRK14896         16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPR   62 (258)
T ss_pred             HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHH
Confidence            34445555444457889999999999999999998889999999984

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.73  E-value=1.5e-05  Score=61.36  Aligned_cols=47  Identities=23%  Similarity=0.408  Sum_probs=38.8

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ...+|+.......++++|||+|||+|..+..+++.+++|+++|.++.
T Consensus        35 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~   81 (233)
T PRK05134         35 LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEE   81 (233)
T ss_pred             HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHH
Confidence            33456666555567899999999999999988888889999999984

>PRK07402 precorrin-6B methylase; Provisional

Probab=97.70  E-value=1.7e-05  Score=59.94  Aligned_cols=44  Identities=14%  Similarity=0.108  Sum_probs=33.8

Q ss_pred             cccccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCCc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      -++.+|||+|||+|..++.+++..  .+|+++|.++.  .++.++.|+
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~--~~~~a~~n~   84 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEE--VVNLIRRNC   84 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHH--HHHHHHHHH
Confidence            367899999999999999887653  59999999984  444444443

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.69  E-value=1.7e-05  Score=60.65  Aligned_cols=49  Identities=14%  Similarity=0.210  Sum_probs=35.7

Q ss_pred             hHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCcc
Q 032395           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNR  103 (141)
Q Consensus        55 s~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~  103 (141)
                      +..+..++.+....-++.+|||+|||+|..+..+++.   +.+|++.|.++.
T Consensus        57 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~  108 (205)
T PRK13944         57 APHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKE  108 (205)
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHH
Confidence            3344455544433346789999999999999877764   249999999984

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.68  E-value=9.6e-06  Score=72.64  Aligned_cols=47  Identities=26%  Similarity=0.126  Sum_probs=40.2

Q ss_pred             cccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      .++++|||||||||..++.+++.|+ +|+++|+++  ..++.++.|+..|
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~--~al~~a~~N~~~n  584 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSN--TYLEWAERNFALN  584 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHh
Confidence            3689999999999999999999988 799999999  4666666766665

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.68  E-value=1.7e-05  Score=60.50  Aligned_cols=50  Identities=16%  Similarity=0.163  Sum_probs=37.9

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .+..+..++......-++.+|||+|||+|..+..+++...+|+++|.++.
T Consensus        62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~  111 (212)
T PRK00312         62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKT  111 (212)
T ss_pred             CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHH
Confidence            34445555554434446789999999999999888887779999999984

>PLN02672 methionine S-methyltransferase

Probab=97.66  E-value=1.3e-05  Score=74.73  Aligned_cols=63  Identities=19%  Similarity=0.096  Sum_probs=46.7

Q ss_pred             ehhHHHHHHHHhhh-cccccccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCCchhh
Q 032395           53 PCSVILAEYVWQQR-YRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        53 ~as~~la~~l~~~~-~~~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      |-+..|.+.+...+ ..|++++|||+|||+|.+++.+++..  ++|+++|+++  ++++.++.|+..|
T Consensus       100 peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~--~Al~~A~~Na~~n  165 (1082)
T PLN02672        100 DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINP--RAVKVAWINLYLN  165 (1082)
T ss_pred             hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHc
Confidence            34445666544332 23567899999999999999988764  4899999999  5777777777665

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=97.65  E-value=2.9e-05  Score=60.79  Aligned_cols=34  Identities=24%  Similarity=0.264  Sum_probs=29.3

Q ss_pred             ccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..+..+++.  +++|+++|.++.
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~   66 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPA   66 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHH
Confidence            5689999999999999888765  459999999984

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.65  E-value=1.1e-05  Score=63.36  Aligned_cols=34  Identities=26%  Similarity=0.381  Sum_probs=31.3

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.+++.+.+|+++|.++.
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~   77 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAE   77 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHH
Confidence            4579999999999999999999999999999984

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=97.65  E-value=1.6e-05  Score=65.64  Aligned_cols=45  Identities=24%  Similarity=0.296  Sum_probs=34.3

Q ss_pred             cccEEEecCCCCCchhhhhhcCC--ceEEccCCccceeccccCCCchhh
Q 032395           71 GANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ..+|||+|||+|.+++.+++...  +|+++|.++.  .++.++.|...|
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~--Al~~A~~nl~~n  243 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAA--ALESSRATLAAN  243 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHc
Confidence            45799999999999999888753  8999999984  455444444433

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=97.64  E-value=4.1e-05  Score=62.69  Aligned_cols=52  Identities=19%  Similarity=0.232  Sum_probs=38.8

Q ss_pred             eeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        51 ~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      .|++-..... +..+...+++++|||+|||+|..++.++..|+ .|+++|.++.
T Consensus       104 ew~s~~k~~~-l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~  156 (322)
T PRK15068        104 EWRSDWKWDR-VLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQL  156 (322)
T ss_pred             eehHHhHHHH-HHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHH
Confidence            5665443222 22333456899999999999999999998887 7999998874

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=97.63  E-value=2.9e-05  Score=59.61  Aligned_cols=34  Identities=15%  Similarity=0.117  Sum_probs=29.6

Q ss_pred             ccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..+..+++.  +.+++++|+++.
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~   78 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEY   78 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHH
Confidence            5679999999999999888775  459999999994

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=97.63  E-value=2e-05  Score=62.37  Aligned_cols=45  Identities=18%  Similarity=0.119  Sum_probs=34.8

Q ss_pred             cccEEEecCCCCCchhhhhhc--CCceEEccCCccceeccccCCCchhh
Q 032395           71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ..+|||+|||+|.+++.+++.  +.+|+++|+++  +.++.+++|+..|
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~--~al~~A~~N~~~~  133 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDP--AAVRCARRNLADA  133 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHc
Confidence            358999999999999988764  34999999998  4566566665444

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.61  E-value=2.6e-05  Score=59.10  Aligned_cols=46  Identities=17%  Similarity=0.264  Sum_probs=35.0

Q ss_pred             cccccccEEEecCCCCCchhhhhhc-C--CceEEccCCccceeccccCCCc
Q 032395           67 YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      ...++.+|||+|||+|.+++.+++. +  .+|+++|.++.  .++.+++|+
T Consensus        37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~--~~~~a~~n~   85 (198)
T PRK00377         37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEK--AINLTRRNA   85 (198)
T ss_pred             CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHH
Confidence            4457889999999999999988764 3  48999999984  444444443

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=97.61  E-value=1.4e-05  Score=67.34  Aligned_cols=47  Identities=17%  Similarity=0.029  Sum_probs=38.2

Q ss_pred             cccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      .++++|||+|||||..++.++..|+ +|+++|.++.  .++.+++|+..|
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~--al~~a~~N~~~N  266 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQE--ALDIARQNVELN  266 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHHHc
Confidence            3689999999999999998887777 9999999994  565556665555

>TIGR00452 methyltransferase, putative

Probab=97.61  E-value=6.5e-05  Score=61.52  Aligned_cols=37  Identities=14%  Similarity=0.227  Sum_probs=32.8

Q ss_pred             cccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           67 YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      ..+++++|||+|||+|...+.++..|+ .|+++|.++.
T Consensus       118 ~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~  155 (314)
T TIGR00452       118 SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVL  155 (314)
T ss_pred             CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHH
Confidence            457899999999999999988888887 7999999884

Known examples to date are restricted to the proteobacteria.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=97.61  E-value=2.6e-05  Score=66.19  Aligned_cols=57  Identities=23%  Similarity=0.133  Sum_probs=40.7

Q ss_pred             HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc--CCceEEccCCccceeccccCCCchh
Q 032395           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      ..+.+.+....  -++.+|||+|||+|.+++.+++.  +++|+++|+++  +.++.+++|+..
T Consensus       239 E~LVe~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~--~ALe~AreNa~~  297 (423)
T PRK14966        239 EHLVEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISP--PALETARKNAAD  297 (423)
T ss_pred             HHHHHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHH
Confidence            34555554322  14579999999999999988764  35999999998  466666666543

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=97.60  E-value=2.6e-05  Score=62.78  Aligned_cols=44  Identities=16%  Similarity=0.097  Sum_probs=34.9

Q ss_pred             cccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCCchh
Q 032395           71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      +++|||+|||+|..++.+++..  ++|+++|+++  +.++.++.|+..
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~--~al~~A~~n~~~  167 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISP--DALAVAEINIER  167 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHH
Confidence            4689999999999999998763  4999999998  456555555543

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.59  E-value=2.6e-05  Score=60.04  Aligned_cols=51  Identities=18%  Similarity=0.289  Sum_probs=39.6

Q ss_pred             ehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-C--CceEEccCCcc
Q 032395           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNR  103 (141)
Q Consensus        53 ~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~  103 (141)
                      -.+..+..++......-++.+|||+|||+|..+..+++. +  .+|++.|.++.
T Consensus        59 ~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~  112 (212)
T PRK13942         59 ISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPE  112 (212)
T ss_pred             eCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHH
Confidence            355566666666555557899999999999999887765 3  49999999984

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.57  E-value=3.6e-05  Score=60.51  Aligned_cols=58  Identities=24%  Similarity=0.221  Sum_probs=41.0

Q ss_pred             HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCCch
Q 032395           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      ..+.+.+.......++.+|||+|||+|..++.+++..  .+|+++|.++.  .++.++.|..
T Consensus        94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~--~l~~a~~n~~  153 (275)
T PRK09328         94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPE--ALAVARRNAK  153 (275)
T ss_pred             HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHH
Confidence            4455555433333466799999999999999888765  49999999984  4555555443

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=97.56  E-value=3.1e-05  Score=65.31  Aligned_cols=46  Identities=15%  Similarity=0.033  Sum_probs=37.0

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ++.+|||+|||+|..++.+++.+.+|++.|.++.  .++.++.|+..|
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~--av~~a~~n~~~~  337 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPE--SVEKAQQNAELN  337 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHH--HHHHHHHHHHHh
Confidence            4579999999999999999988789999999984  555555554433

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PLN02244 tocopherol O-methyltransferase

Probab=97.56  E-value=3.4e-05  Score=63.43  Aligned_cols=34  Identities=24%  Similarity=0.229  Sum_probs=30.3

Q ss_pred             ccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..++.+++. +++|+++|+++.
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~  152 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPV  152 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHH
Confidence            5679999999999999988875 789999999985

>TIGR00536 hemK_fam HemK family putative methylases

Probab=97.51  E-value=3.3e-05  Score=61.87  Aligned_cols=43  Identities=21%  Similarity=0.209  Sum_probs=34.5

Q ss_pred             ccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCCchh
Q 032395           72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        72 ~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      ++|||+|||+|.+++.+++..  ++|+++|+++  +.++.++.|+..
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~--~al~~a~~n~~~  160 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISP--DALAVAEENAEK  160 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHH
Confidence            689999999999999888764  4999999998  456655555543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.51  E-value=2.4e-05  Score=59.86  Aligned_cols=35  Identities=23%  Similarity=0.425  Sum_probs=31.5

Q ss_pred             cccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .++.+|||+|||+|..+..+++.+.+|+++|.++.
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~   96 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQ   96 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHH
Confidence            36789999999999999999888889999999984

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.50  E-value=4.5e-05  Score=60.07  Aligned_cols=45  Identities=20%  Similarity=0.192  Sum_probs=36.2

Q ss_pred             HHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++.+......-++.+|||+|||+|.++..+++.+.+|++.|.++.
T Consensus        18 ~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~   62 (253)
T TIGR00755        18 IQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPR   62 (253)
T ss_pred             HHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHH
Confidence            344444333446789999999999999999998889999999995

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=97.50  E-value=2.5e-05  Score=59.65  Aligned_cols=34  Identities=18%  Similarity=0.066  Sum_probs=29.1

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      .+.+|||+|||+|..++.+++..  .+|+++|.++.
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~   75 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEP   75 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechH
Confidence            46799999999999999887653  48999999994

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=97.50  E-value=6e-05  Score=59.14  Aligned_cols=34  Identities=26%  Similarity=0.323  Sum_probs=30.1

Q ss_pred             ccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..+..+++.  +++|+++|.++.
T Consensus        29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~   64 (255)
T PRK14103         29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPE   64 (255)
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHH
Confidence            6789999999999999888876  569999999984

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.48  E-value=6.6e-05  Score=50.25  Aligned_cols=38  Identities=18%  Similarity=0.093  Sum_probs=28.5

Q ss_pred             EEecCCCCCchhhhhhc--CCceEEccCCccceeccccCCCc
Q 032395           75 VELGAGTSLPGLVAAKV--GSNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        75 LELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      ||+|||+|.....+...  ..+++++|.++.  .++.+++..
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~--~l~~a~~~~   40 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPS--MLERARERL   40 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSS--TTSTTCCCH
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHh
Confidence            79999999999988776  559999999994  565554443

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.48  E-value=4.8e-05  Score=63.05  Aligned_cols=45  Identities=16%  Similarity=0.017  Sum_probs=36.4

Q ss_pred             cccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395           71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      +++||||+||+|.+++.+++...+|+++|.++  +.++.+++|+..|
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~--~av~~a~~n~~~~  242 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNFRRVLATEIAK--PSVNAAQYNIAAN  242 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhCCEEEEEECCH--HHHHHHHHHHHHc
Confidence            45799999999999998888777999999999  4566666665554

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.46  E-value=9.3e-05  Score=59.43  Aligned_cols=45  Identities=22%  Similarity=0.223  Sum_probs=31.1

Q ss_pred             HHHHHhhhcccccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      .+++......-+|.+|||+|||.|-+++.+|+. |++|+++.+++.
T Consensus        51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~   96 (273)
T PF02353_consen   51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEE   96 (273)
T ss_dssp             HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HH
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHH
Confidence            334444444557899999999999999999987 999999999985

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.46  E-value=0.0001  Score=57.05  Aligned_cols=49  Identities=22%  Similarity=0.038  Sum_probs=38.8

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ....|.+|+..... -++.+||++|||.|.-++++|..|.+|+++|+++.
T Consensus        19 p~~~l~~~~~~l~~-~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~   67 (213)
T TIGR03840        19 VNPLLVKHWPALGL-PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEI   67 (213)
T ss_pred             CCHHHHHHHHhhCC-CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHH
Confidence            34456666554211 15679999999999999999999999999999994

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.45  E-value=5.7e-05  Score=63.31  Aligned_cols=36  Identities=25%  Similarity=0.195  Sum_probs=31.1

Q ss_pred             ccccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      .-++++|||+|||+|..++.+++. +++|+++|+++.
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~  201 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAE  201 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHH
Confidence            346789999999999999988874 779999999984

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=97.45  E-value=5.6e-05  Score=61.79  Aligned_cols=55  Identities=18%  Similarity=0.045  Sum_probs=41.4

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCC
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      .++..+......-++++|||.|||+|...+.++..+++|++.|.++.  .++.++.|
T Consensus       169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~--~~~~a~~n  223 (329)
T TIGR01177       169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWK--MVAGARIN  223 (329)
T ss_pred             HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHH--HHHHHHHH
Confidence            45666655444446789999999999999888888999999999984  44433444

This family is found exclusively in the Archaea.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.44  E-value=0.00017  Score=54.08  Aligned_cols=47  Identities=21%  Similarity=0.107  Sum_probs=34.5

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCCchhhhhhcC---CceEEccCCcc
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNR  103 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~g---a~Vv~tD~~~~  103 (141)
                      -+.+...+....-++++|||+|||+|.++..+++..   .+|+++|+++.
T Consensus        19 ~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~   68 (188)
T TIGR00438        19 KLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM   68 (188)
T ss_pred             HHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc
Confidence            344444444444578999999999999988776643   27999999984

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.42  E-value=4e-05  Score=58.49  Aligned_cols=46  Identities=22%  Similarity=0.205  Sum_probs=38.8

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC--ceEEccCCccceeccccCCCchhh
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      +|.+++|+|||||-+++.++..+.  +|++.|.++  +.++.+++|....
T Consensus        34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~--~a~~~~~~N~~~f   81 (187)
T COG2242          34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDE--EALELIERNAARF   81 (187)
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCH--HHHHHHHHHHHHh
Confidence            788999999999999998887664  999999998  5777777776543

>PRK05785 hypothetical protein; Provisional

Probab=97.41  E-value=9e-05  Score=57.66  Aligned_cols=34  Identities=21%  Similarity=0.161  Sum_probs=30.1

Q ss_pred             ccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||||..+..+++. +.+|+++|.++.
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~   85 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAEN   85 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHH
Confidence            4679999999999999888877 579999999995

>PRK04266 fibrillarin; Provisional

Probab=97.41  E-value=6.8e-05  Score=58.61  Aligned_cols=36  Identities=19%  Similarity=0.144  Sum_probs=30.6

Q ss_pred             ccccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      .-++.+|||+|||+|..++.+++..  .+|++.|.++.
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~  107 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPR  107 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHH
Confidence            3467899999999999999888763  38999999984

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.40  E-value=6.3e-05  Score=61.27  Aligned_cols=43  Identities=16%  Similarity=0.132  Sum_probs=34.3

Q ss_pred             ccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCCchh
Q 032395           72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        72 ~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      ++|||+|||+|.+++.+++..  ++|+++|+++  ..++.++.|+..
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~--~al~~A~~n~~~  179 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISP--DALAVAEINIER  179 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHH
Confidence            689999999999999888763  4999999998  456655555543

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.39  E-value=5.9e-05  Score=61.17  Aligned_cols=46  Identities=15%  Similarity=0.143  Sum_probs=36.9

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      +++.+.......++.+|||+|||+|.++..+++.+.+|+++|+++.
T Consensus        24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~   69 (294)
T PTZ00338         24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPR   69 (294)
T ss_pred             HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHH
Confidence            3444544444457789999999999999998888889999999984

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.39  E-value=7.2e-05  Score=57.04  Aligned_cols=35  Identities=34%  Similarity=0.488  Sum_probs=31.3

Q ss_pred             cccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      +++.+|||+|||+|..+..+++.+++++++|.++.
T Consensus        44 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~   78 (224)
T TIGR01983        44 LFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEE   78 (224)
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHH
Confidence            46889999999999999888888889999999874

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.35  E-value=3e-05  Score=50.44  Aligned_cols=29  Identities=34%  Similarity=0.388  Sum_probs=24.9

Q ss_pred             EEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           75 VELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        75 LELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      ||+|||+|..+..+++. +.+|+++|.++.
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~   30 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEE   30 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HH
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHH
Confidence            79999999999999998 669999999995

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=97.35  E-value=5.1e-05  Score=59.56  Aligned_cols=42  Identities=17%  Similarity=0.264  Sum_probs=32.1

Q ss_pred             ccccEEEecCCCCCchhhhhh----cCCceEEccCCccceeccccCCC
Q 032395           70 SGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~----~ga~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      ++.+|||+|||+|..++.+++    .+++|+++|.++.  .++.++.|
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~--ml~~A~~~  101 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPA--MIERCRRH  101 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHH--HHHHHHHH
Confidence            678999999999999887765    2459999999984  44444333

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.35  E-value=7.5e-05  Score=64.68  Aligned_cols=44  Identities=23%  Similarity=0.182  Sum_probs=33.9

Q ss_pred             cccEEEecCCCCCchhhhhhc--CCceEEccCCccceeccccCCCchh
Q 032395           71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      +.+|||+|||+|.+++.+++.  +++|+++|+++  ++++.++.|+..
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~--~al~~A~~N~~~  184 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISL--DAIEVAKSNAIK  184 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCH--HHHHHHHHHHHH
Confidence            468999999999999987764  45999999998  355555555443

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=97.34  E-value=6.6e-05  Score=58.79  Aligned_cols=59  Identities=17%  Similarity=0.054  Sum_probs=41.4

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCCchhhhhhc--C-CceEEccCCccceeccccCCCchhh
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--G-SNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~--g-a~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      .-..|+.......+.++|||+|||+|..++.++..  + .+|+++|.++  +.++.++.|++.+
T Consensus        55 ~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~--~~~~~A~~n~~~~  116 (234)
T PLN02781         55 DEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDK--EAYEVGLEFIKKA  116 (234)
T ss_pred             HHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHc
Confidence            33556555545567899999999999988866553  2 3999999998  4555555555443

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.33  E-value=0.00017  Score=58.88  Aligned_cols=52  Identities=15%  Similarity=0.211  Sum_probs=40.6

Q ss_pred             eeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        51 ~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      .|.+-.--.. +..+-..++||+|||+|||.|.-+.-++..|| .|+++|-+..
T Consensus        97 EWrSd~KW~r-l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~l  149 (315)
T PF08003_consen   97 EWRSDWKWDR-LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPL  149 (315)
T ss_pred             cccccchHHH-HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChH
Confidence            5665443333 33344478999999999999999999999999 7999998873

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.32  E-value=0.00015  Score=56.39  Aligned_cols=47  Identities=26%  Similarity=0.141  Sum_probs=37.1

Q ss_pred             HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ..|.+|+.... .-++.+||++|||.|.-++.+|..|.+|+++|+++.
T Consensus        24 ~~L~~~~~~~~-~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~   70 (218)
T PRK13255         24 PLLQKYWPALA-LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSEL   70 (218)
T ss_pred             HHHHHHHHhhC-CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHH
Confidence            34555554321 125679999999999999999999999999999984

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=97.32  E-value=7.9e-05  Score=57.59  Aligned_cols=59  Identities=25%  Similarity=0.213  Sum_probs=39.8

Q ss_pred             eehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc--CCceEEccCCccceeccccCCC
Q 032395           52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        52 W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      ++.+..+.+.+..... -.+++|||+|||+|..++.+++.  +++|+++|.++.  .++.++.|
T Consensus        70 ~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~--~~~~a~~~  130 (251)
T TIGR03534        70 RPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPE--ALAVARKN  130 (251)
T ss_pred             CCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHH
Confidence            3444555555544321 14568999999999999988876  349999999984  44444443

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.31  E-value=0.00028  Score=54.34  Aligned_cols=34  Identities=26%  Similarity=0.116  Sum_probs=28.8

Q ss_pred             cccccEEEecCCCCCchhhhhhcC---CceEEccCCc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSN  102 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~g---a~Vv~tD~~~  102 (141)
                      .++.+|||||||+|..+..+++..   .+|+++|+++
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~   86 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP   86 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc
Confidence            367899999999999998777753   3899999987

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=97.30  E-value=0.00013  Score=57.97  Aligned_cols=51  Identities=12%  Similarity=0.108  Sum_probs=36.5

Q ss_pred             ehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhh-cCCceEEccCCcc
Q 032395           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNR  103 (141)
Q Consensus        53 ~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~-~ga~Vv~tD~~~~  103 (141)
                      |.+..-+..+......-++.+|||+|||+|..+..+++ .+++|+++|+++.
T Consensus        35 ~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~   86 (263)
T PTZ00098         35 SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEK   86 (263)
T ss_pred             CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHH
Confidence            33333344444433344778999999999999887765 4669999999984

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=4.6e-05  Score=59.12  Aligned_cols=65  Identities=17%  Similarity=0.115  Sum_probs=49.4

Q ss_pred             cceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCC
Q 032395           47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        47 ~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      .+.-.|=++..+...|.+....-++.+|||+|||+|..+-++|+...+|+.+|..+.  +.+.++.|
T Consensus        49 i~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~--L~~~A~~~  113 (209)
T COG2518          49 IGCGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEE--LAEQARRN  113 (209)
T ss_pred             CCCCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHH--HHHHHHHH
Confidence            344455677767777776656668899999999999999999999889999999983  34344443

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.29  E-value=0.00011  Score=60.97  Aligned_cols=45  Identities=18%  Similarity=0.031  Sum_probs=35.7

Q ss_pred             cccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395           71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      +.+||||+||+|.+++.+++..++|+++|.++.  .++.++.|+..|
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~--ai~~a~~N~~~~  251 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARNFRRVLATEISKP--SVAAAQYNIAAN  251 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhhCCEEEEEECCHH--HHHHHHHHHHHh
Confidence            357999999999999988887679999999994  555555555444

>TIGR00740 methyltransferase, putative

Probab=97.28  E-value=6.8e-05  Score=58.24  Aligned_cols=41  Identities=20%  Similarity=0.263  Sum_probs=31.8

Q ss_pred             ccccEEEecCCCCCchhhhhhc----CCceEEccCCccceeccccCC
Q 032395           70 SGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIELLMTSLP  112 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~----ga~Vv~tD~~~~~~~l~n~~~  112 (141)
                      ++.+|||+|||+|..++.+++.    +++|+++|+++.  .++.++.
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~--ml~~a~~   97 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQP--MVERCRQ   97 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHH--HHHHHHH
Confidence            6679999999999998877764    458999999984  4444433

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.25  E-value=0.00043  Score=59.93  Aligned_cols=78  Identities=13%  Similarity=0.049  Sum_probs=55.4

Q ss_pred             eehhhhhhcccccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCc
Q 032395           35 FSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        35 ~~i~i~~~~~~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      ++++|...+...+..   .++.+|-.++..+...-.++.++|+=||||..|+.+|+.-.+|++.++++  +.+.-++.|+
T Consensus       351 ltF~iSp~AFFQ~Nt---~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~--~aV~dA~~nA  425 (534)
T KOG2187|consen  351 LTFRISPGAFFQTNT---SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISP--DAVEDAEKNA  425 (534)
T ss_pred             eEEEECCchhhccCc---HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecCh--hhcchhhhcc
Confidence            444554444333322   36677777777765554678999999999999999999888999999998  4555555555


Q ss_pred             hhh
Q 032395          115 HIC  117 (141)
Q Consensus       115 ~~n  117 (141)
                      ..|
T Consensus       426 ~~N  428 (534)
T KOG2187|consen  426 QIN  428 (534)
T ss_pred             hhc
Confidence            554

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=97.25  E-value=8.6e-05  Score=58.81  Aligned_cols=33  Identities=27%  Similarity=0.432  Sum_probs=29.9

Q ss_pred             ccEEEecCCCCCchhhhhhcCCceEEccCCccc
Q 032395           72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI  104 (141)
Q Consensus        72 ~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~  104 (141)
                      +++||||||||+.|..+.-+-.+.++.|++.+|
T Consensus       127 ~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nM  159 (287)
T COG4976         127 RRMLDLGCGTGLTGEALRDMADRLTGVDISENM  159 (287)
T ss_pred             ceeeecccCcCcccHhHHHHHhhccCCchhHHH
Confidence            689999999999999888888899999999864

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.24  E-value=4.4e-05  Score=57.89  Aligned_cols=46  Identities=24%  Similarity=0.317  Sum_probs=36.8

Q ss_pred             cccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchh
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      ++|.++|||=||||.+|+-+...|| +|++.|.+.  +++..++.|++.
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~--~a~~~i~~N~~~   87 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNR--KAIKIIKKNLEK   87 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-H--HHHHHHHHHHHH
T ss_pred             cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCH--HHHHHHHHHHHH
Confidence            7899999999999999999999998 999999998  467777777654

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=97.23  E-value=0.00019  Score=54.70  Aligned_cols=34  Identities=29%  Similarity=0.291  Sum_probs=29.8

Q ss_pred             ccccEEEecCCCCCchhhhhhcC---CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g---a~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.++..+   .+|+++|.++.
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~   87 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEG   87 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHH
Confidence            57899999999999999887765   59999999884

>PRK06202 hypothetical protein; Provisional

Probab=97.20  E-value=0.00013  Score=56.44  Aligned_cols=34  Identities=24%  Similarity=0.320  Sum_probs=27.9

Q ss_pred             ccccEEEecCCCCCchhhhhh----cC--CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAK----VG--SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~----~g--a~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..+..+++    .|  .+|+++|.++.
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~   99 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR   99 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH
Confidence            457999999999998877664    23  38999999995

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=97.18  E-value=0.00041  Score=52.69  Aligned_cols=35  Identities=26%  Similarity=0.215  Sum_probs=29.8

Q ss_pred             cccccEEEecCCCCCchhhhhhcCC--ceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~  103 (141)
                      .+.++|||+|||+|..+..+++.+.  +|+++|.++.
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~   69 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAG   69 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHH
Confidence            4567999999999999988888764  7899999984

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.18  E-value=0.00016  Score=59.45  Aligned_cols=48  Identities=23%  Similarity=0.199  Sum_probs=35.3

Q ss_pred             HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC---ceEEccCCcc
Q 032395           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNR  103 (141)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga---~Vv~tD~~~~  103 (141)
                      ..+..++.+....-++.+|||+|||+|..++.+++...   +|+++|.++.
T Consensus        66 p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~  116 (322)
T PRK13943         66 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRK  116 (322)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHH
Confidence            34444454443444678999999999999998887532   6999999984

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=97.18  E-value=0.00019  Score=61.03  Aligned_cols=34  Identities=24%  Similarity=0.259  Sum_probs=29.5

Q ss_pred             ccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.+++. +++|+++|+++.
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~  300 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVN  300 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHH
Confidence            5679999999999998877764 679999999974

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=97.15  E-value=0.00013  Score=55.99  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=29.1

Q ss_pred             ccccEEEecCCCCCchhhhhhc-C--CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..+..+++. +  .+|+++|+++.
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~   81 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSEN   81 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHH
Confidence            5789999999999999888764 3  49999999984

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK08317 hypothetical protein; Provisional

Probab=97.13  E-value=0.0006  Score=51.62  Aligned_cols=37  Identities=22%  Similarity=0.195  Sum_probs=30.2

Q ss_pred             cccccccEEEecCCCCCchhhhhhcC---CceEEccCCcc
Q 032395           67 YRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNR  103 (141)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~l~~a~~g---a~Vv~tD~~~~  103 (141)
                      ...++.+|||+|||+|..+..++...   .+|+++|.++.
T Consensus        16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~   55 (241)
T PRK08317         16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEA   55 (241)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHH
Confidence            34467899999999999988777642   48999999984

>PHA03412 putative methyltransferase; Provisional

Probab=97.12  E-value=0.00016  Score=57.27  Aligned_cols=54  Identities=13%  Similarity=0.046  Sum_probs=38.2

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-----CCceEEccCCccceeccccCCCc
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-----GSNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-----ga~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      .+|+++...  ...+.+|||+|||+|.+++.+++.     .++|++.|+++.  +++.++.|.
T Consensus        38 ~iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~--Al~~Ar~n~   96 (241)
T PHA03412         38 GLARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHT--YYKLGKRIV   96 (241)
T ss_pred             HHHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHH--HHHHHHhhc
Confidence            355555422  224779999999999999988763     238999999994  455555553

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=97.11  E-value=7.2e-05  Score=50.46  Aligned_cols=37  Identities=30%  Similarity=0.316  Sum_probs=26.4

Q ss_pred             EEEecCCCCCchhhhhhc---C--CceEEccCCccceeccccCC
Q 032395           74 VVELGAGTSLPGLVAAKV---G--SNVTLTDDSNRIELLMTSLP  112 (141)
Q Consensus        74 vLELG~GtGl~~l~~a~~---g--a~Vv~tD~~~~~~~l~n~~~  112 (141)
                      |||+|||+|.....++..   +  .+++++|+++.  .++.+++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~--~l~~~~~   42 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPE--MLELAKK   42 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HH--HHHHHHH
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHH--HHHHHHH
Confidence            799999999999988776   3  69999999994  4544433

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.11  E-value=0.00012  Score=55.53  Aligned_cols=34  Identities=18%  Similarity=0.077  Sum_probs=29.0

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      ...++||+|||+|..++.+++..  ++|+++|.++.
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~   51 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTP   51 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHH
Confidence            45689999999999999888763  49999999984

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=97.09  E-value=0.00015  Score=57.35  Aligned_cols=34  Identities=29%  Similarity=0.496  Sum_probs=28.5

Q ss_pred             ccccEEEecCCCCCchhhhhhc-CC--ceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-ga--~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..++.+++. +.  +|+++|.++.
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~  113 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPE  113 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHH
Confidence            6789999999999988876654 44  7999999984

>TIGR03438 probable methyltransferase

Probab=97.03  E-value=0.00018  Score=58.21  Aligned_cols=34  Identities=26%  Similarity=0.316  Sum_probs=29.2

Q ss_pred             ccccEEEecCCCCCchhhhhhc---CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~  103 (141)
                      ++.+|||||||+|..+..+++.   +.+|++.|+++.
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~   99 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISAD   99 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHH
Confidence            4679999999999998877765   469999999994

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PHA03411 putative methyltransferase; Provisional

Probab=97.01  E-value=0.0002  Score=57.76  Aligned_cols=41  Identities=10%  Similarity=0.080  Sum_probs=31.7

Q ss_pred             ccccEEEecCCCCCchhhhhhc--CCceEEccCCccceeccccCC
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIELLMTSLP  112 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~l~n~~~  112 (141)
                      ...+|||+|||+|.+++.+++.  +.+|+++|+++.  .++.+++
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~--al~~Ar~  106 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPE--FARIGKR  106 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHH--HHHHHHH
Confidence            3568999999999999887765  359999999994  4443333

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=97.01  E-value=0.00037  Score=55.14  Aligned_cols=50  Identities=22%  Similarity=0.193  Sum_probs=37.9

Q ss_pred             eeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcC--CceEEccCCccc
Q 032395           49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRI  104 (141)
Q Consensus        49 ~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~  104 (141)
                      .+.|...      +......-+|.+|||+|||||-.++.+++..  ++|++.|+++.|
T Consensus        36 ~~~Wr~~------~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~M   87 (238)
T COG2226          36 HRLWRRA------LISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESM   87 (238)
T ss_pred             hHHHHHH------HHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHH
Confidence            3577764      2222222278999999999999999988864  499999999964

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=96.99  E-value=0.0004  Score=56.25  Aligned_cols=50  Identities=16%  Similarity=0.166  Sum_probs=38.1

Q ss_pred             hcccccccEEEecCCCCCchhhhhh-cCC-ceEEccCCccceeccccCCCchhh
Q 032395           66 RYRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        66 ~~~~~~~~vLELG~GtGl~~l~~a~-~ga-~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ...+++..++|+|||+|..++.++. ++. .|+++|.+++  ++..+.+|+..+
T Consensus       144 ~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~--Ai~La~eN~qr~  195 (328)
T KOG2904|consen  144 SEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKA--AIKLAKENAQRL  195 (328)
T ss_pred             hhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHH--HHHHHHHHHHHH
Confidence            3456777899999999999997654 454 8999999994  666666666544

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=96.94  E-value=0.00071  Score=53.65  Aligned_cols=34  Identities=24%  Similarity=0.297  Sum_probs=29.2

Q ss_pred             ccccEEEecCCCCCchhhhhhc-C--CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.+++. +  ++|+++|.++.
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~  109 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSE  109 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHH
Confidence            5789999999999998887764 4  48999999995

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=96.92  E-value=0.00037  Score=57.76  Aligned_cols=43  Identities=19%  Similarity=0.148  Sum_probs=35.2

Q ss_pred             cEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395           73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        73 ~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      .+|||=||+|..|+.+|+...+|+++|..+  ++++.++.|+..|
T Consensus       199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~--~av~~A~~Na~~N  241 (352)
T PF05958_consen  199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVE--EAVEDARENAKLN  241 (352)
T ss_dssp             EEEEES-TTTCCHHHHHCCSSEEEEEES-H--HHHHHHHHHHHHT
T ss_pred             cEEEEeecCCHHHHHHHhhCCeEEEeeCCH--HHHHHHHHHHHHc
Confidence            799999999999999999999999999998  4666666666655

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=96.92  E-value=0.00076  Score=57.40  Aligned_cols=35  Identities=31%  Similarity=0.296  Sum_probs=31.6

Q ss_pred             cccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .++++|||+|||+|..+..+++.+.+|++.|+++.
T Consensus        36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~   70 (475)
T PLN02336         36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIES   70 (475)
T ss_pred             cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHH
Confidence            36779999999999999999988889999999984

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.91  E-value=0.00044  Score=52.98  Aligned_cols=50  Identities=18%  Similarity=0.217  Sum_probs=37.6

Q ss_pred             hhHHHHHHHHhhhcccc---cccEEEecCCCCCchhhhhhc-C--CceEEccCCcc
Q 032395           54 CSVILAEYVWQQRYRFS---GANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNR  103 (141)
Q Consensus        54 as~~la~~l~~~~~~~~---~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~  103 (141)
                      -++.|.+-+......++   .+.++|+|||+|.++-++++. +  +...+||+++.
T Consensus        24 DTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~   79 (209)
T KOG3191|consen   24 DTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPE   79 (209)
T ss_pred             hhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHH
Confidence            45666666766544443   468999999999999888874 3  37899999994

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=96.91  E-value=0.00021  Score=59.93  Aligned_cols=45  Identities=18%  Similarity=0.171  Sum_probs=36.5

Q ss_pred             cccEEEecCCCCCchhhhhhc-CC-ceEEccCCccceeccccCCCchhh
Q 032395           71 GANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~-ga-~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      +.+|||++||+|..|+.+++. ++ +|++.|.++  +.++.+++|++.|
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~--~Av~~a~~N~~~N  104 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINP--DAVELIKKNLELN  104 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHh
Confidence            358999999999999988764 54 899999999  4666666766665

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=96.87  E-value=0.0004  Score=53.65  Aligned_cols=60  Identities=15%  Similarity=0.011  Sum_probs=42.7

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCccceeccccCCCch
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      .+..-..++.......+-++|||+|+++|..++.+|..   +.+|+.+|.++  +..+.++.|+.
T Consensus        29 i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~--~~~~~A~~~~~   91 (205)
T PF01596_consen   29 ISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDP--ERAEIARENFR   91 (205)
T ss_dssp             HHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSH--HHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcH--HHHHHHHHHHH
Confidence            44455556555444557799999999999999988864   45999999998  34455555544

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK06922 hypothetical protein; Provisional

Probab=96.84  E-value=0.00048  Score=61.46  Aligned_cols=36  Identities=19%  Similarity=0.225  Sum_probs=29.7

Q ss_pred             ccccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~  103 (141)
                      .+++.+|||+|||+|..+..+++.  +.+|+++|+++.
T Consensus       416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~  453 (677)
T PRK06922        416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISEN  453 (677)
T ss_pred             hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHH
Confidence            346789999999999988766653  359999999995

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=96.84  E-value=0.00089  Score=52.54  Aligned_cols=50  Identities=22%  Similarity=0.170  Sum_probs=28.7

Q ss_pred             eeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-C--CceEEccCCccc
Q 032395           49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRI  104 (141)
Q Consensus        49 ~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~~  104 (141)
                      .+.|..  .+++.+    ..-++.+|||+|||||.+++.+++. +  .+|+++|+++.|
T Consensus        32 ~~~wr~--~~~~~~----~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~M   84 (233)
T PF01209_consen   32 DRRWRR--KLIKLL----GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGM   84 (233)
T ss_dssp             -----S--HHHHHH----T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHH
T ss_pred             HHHHHH--HHHhcc----CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHH
Confidence            356776  223322    2347789999999999999987764 4  389999999953

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=96.84  E-value=0.00027  Score=54.47  Aligned_cols=46  Identities=20%  Similarity=0.105  Sum_probs=35.1

Q ss_pred             ccccEEEecCCCCCchhhhhh--cCCceEEccCCccceeccccCCCchhh
Q 032395           70 SGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~--~ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      +|..|+|+-||.|..++.+|+  .+++|++.|++|  .+++.+++|+.+|
T Consensus       101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np--~a~~~L~~Ni~lN  148 (200)
T PF02475_consen  101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNP--DAVEYLKENIRLN  148 (200)
T ss_dssp             TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-H--HHHHHHHHHHHHT
T ss_pred             cceEEEEccCCccHHHHHHhhhcCccEEEEecCCH--HHHHHHHHHHHHc
Confidence            678999999999999999998  455899999998  4566666666666

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=96.82  E-value=0.00051  Score=57.58  Aligned_cols=44  Identities=11%  Similarity=0.073  Sum_probs=37.4

Q ss_pred             ccEEEecCCCCCchhhhhhc--CC-ceEEccCCccceeccccCCCchhh
Q 032395           72 ANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        72 ~~vLELG~GtGl~~l~~a~~--ga-~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      .+|||+-||+|..||.+++.  |+ +|++.|.++  ++++.++.|+.+|
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~--~Av~~i~~N~~~N   92 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINP--KAVESIKNNVEYN   92 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCH--HHHHHHHHHHHHh
Confidence            58999999999999999886  65 899999999  4677777777666

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=96.82  E-value=0.00028  Score=54.68  Aligned_cols=58  Identities=16%  Similarity=0.221  Sum_probs=38.6

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-CC--ceEEccCCccceeccccCCC
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-ga--~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      ++..+...+.+....-+|.+|||+|||+|..+-+++++ |.  +|+..|..+.  +.+.++.|
T Consensus        56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~--l~~~A~~~  116 (209)
T PF01135_consen   56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPE--LAERARRN  116 (209)
T ss_dssp             --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHH--HHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHH--HHHHHHHH
Confidence            55555555555555558899999999999999888876 44  6999999984  44444443

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=96.76  E-value=0.00061  Score=57.69  Aligned_cols=45  Identities=13%  Similarity=0.039  Sum_probs=34.8

Q ss_pred             cccccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCCch
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      .+|.+|||+|||+|..++.++...  .+|++.|.++.  .++.++.|..
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~--~l~~~~~n~~  289 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQ--RLERVRENLQ  289 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHH--HHHHHHHHHH
Confidence            378899999999999999888764  48999999994  4444444443

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=96.70  E-value=0.0011  Score=49.95  Aligned_cols=34  Identities=29%  Similarity=0.324  Sum_probs=29.1

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC---ceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga---~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..+..+++...   +++++|.++.
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~   75 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSE   75 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHH
Confidence            678999999999999887776543   8999999873

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.68  E-value=0.00091  Score=57.07  Aligned_cols=59  Identities=22%  Similarity=0.097  Sum_probs=45.2

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhhh
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHICS  118 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n~  118 (141)
                      |..+........++.++|||=||.|..|+.+|+...+|+++++.+  +.++.+++|++.|+
T Consensus       281 l~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~--~aV~~A~~NA~~n~  339 (432)
T COG2265         281 LYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISP--EAVEAAQENAAANG  339 (432)
T ss_pred             HHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCH--HHHHHHHHHHHHcC
Confidence            444444433344567999999999999999999999999999999  56666666666663

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=96.66  E-value=0.0016  Score=50.07  Aligned_cols=74  Identities=20%  Similarity=0.183  Sum_probs=49.2

Q ss_pred             hhhhhhcccccceeee---ehhHHHHHHHHhhhccc---ccc-cEEEecCCCCCchhhhhhcCC--ceEEccCCccc-ee
Q 032395           37 IAIIENMKEEYGLFVW---PCSVILAEYVWQQRYRF---SGA-NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRI-EL  106 (141)
Q Consensus        37 i~i~~~~~~~~g~~~W---~as~~la~~l~~~~~~~---~~~-~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~-~~  106 (141)
                      ..+......+....+|   ++-..+.+|+..+...+   +.. +|||||||-|.+-.-+++.|.  +.+++||++.. ++
T Consensus        27 ~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L  106 (227)
T KOG1271|consen   27 LELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL  106 (227)
T ss_pred             HHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH
Confidence            3444333333344566   44556777887764422   333 999999999999888888876  69999999942 44


Q ss_pred             cccc
Q 032395          107 LMTS  110 (141)
Q Consensus       107 l~n~  110 (141)
                      .+|+
T Consensus       107 A~ni  110 (227)
T KOG1271|consen  107 AQNI  110 (227)
T ss_pred             HHHH
Confidence            4444

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=96.60  E-value=0.00057  Score=52.21  Aligned_cols=32  Identities=16%  Similarity=0.059  Sum_probs=27.1

Q ss_pred             ccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        72 ~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      ++|||+|||+|..+..+++..  .+|+++|+++.
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~   34 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPE   34 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHH
Confidence            579999999999988877653  58999999884

>PLN02476 O-methyltransferase

Probab=96.59  E-value=0.00087  Score=54.14  Aligned_cols=56  Identities=14%  Similarity=0.119  Sum_probs=39.9

Q ss_pred             HHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCccceeccccCCCchh
Q 032395           59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      ..++.......+.++|||+|+++|..++.+|+.   +.+|+.+|.++  +..+.++.|++.
T Consensus       107 g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~--e~~~~Ar~n~~~  165 (278)
T PLN02476        107 AQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDS--NSLEVAKRYYEL  165 (278)
T ss_pred             HHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHH
Confidence            344444344557899999999999999988863   33799999998  345555555543

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=96.56  E-value=0.0017  Score=48.94  Aligned_cols=34  Identities=15%  Similarity=0.102  Sum_probs=28.0

Q ss_pred             ccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      .+++|||+|||+|..+..+++. +.+++++|.++.
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~   47 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQD   47 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHH
Confidence            5679999999999988877654 458899999874

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=96.54  E-value=0.002  Score=50.91  Aligned_cols=34  Identities=24%  Similarity=0.366  Sum_probs=31.3

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      +..-|||+|||+|+.|-.+...|...++.|+++.
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSps   83 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPS   83 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCCceEEeecCCHH
Confidence            5678999999999999999999989999999995

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.52  E-value=0.0036  Score=49.59  Aligned_cols=53  Identities=19%  Similarity=0.122  Sum_probs=47.2

Q ss_pred             eeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        51 ~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      +=.+++-|...+.+..-.++|+++||+|+.||=.+-++.+.|| +|++.|....
T Consensus        60 VSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~  113 (245)
T COG1189          60 VSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYG  113 (245)
T ss_pred             cccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCC
Confidence            3468888888888887788999999999999999999999999 9999999873

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.50  E-value=0.0031  Score=45.42  Aligned_cols=34  Identities=24%  Similarity=0.212  Sum_probs=29.3

Q ss_pred             ccccEEEecCCCCCchhhhhh-----c-CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAK-----V-GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~-----~-ga~Vv~tD~~~~  103 (141)
                      ....|+|+|||.|.++.+++.     . +.+|++.|.++.
T Consensus        25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~   64 (141)
T PF13679_consen   25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNES   64 (141)
T ss_pred             CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcH
Confidence            556999999999999998887     3 459999999984

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=96.50  E-value=0.0018  Score=50.12  Aligned_cols=45  Identities=20%  Similarity=0.278  Sum_probs=35.6

Q ss_pred             cccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395           71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ...+-|||+|+|++++++|+...+|++++.++.  ..+.+.+|...+
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk--~a~~a~eN~~v~   77 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPK--RARLAEENLHVP   77 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhceEEEEecCcH--HHHHhhhcCCCC
Confidence            367899999999999999999669999999994  444455554443

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=96.49  E-value=0.0018  Score=51.50  Aligned_cols=32  Identities=22%  Similarity=0.138  Sum_probs=29.2

Q ss_pred             ccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        72 ~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      +.++|+|||+|..++.+|..-.+|++||.++.
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~   66 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEA   66 (261)
T ss_pred             ceEEEeccCCCcchHHHHHhhhhheeecCCHH
Confidence            38999999999999999988889999999995

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=96.48  E-value=0.0012  Score=53.19  Aligned_cols=34  Identities=12%  Similarity=0.086  Sum_probs=28.3

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.+++..  .++++.|..+.
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~  184 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGA  184 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHH
Confidence            45799999999999999888764  38999998653

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=96.47  E-value=0.0016  Score=55.47  Aligned_cols=61  Identities=18%  Similarity=0.119  Sum_probs=41.2

Q ss_pred             eeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCccceeccccCCCc
Q 032395           49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        49 ~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      +.+++.+..++..+..   ..+|++|||+|||+|..++.++..   +.+|++.|.++.  .++.++.|+
T Consensus       232 ~~vqd~~s~l~~~~l~---~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~--~l~~~~~~~  295 (445)
T PRK14904        232 VSVQNPTQALACLLLN---PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQ--KLEKIRSHA  295 (445)
T ss_pred             EEEeCHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHH--HHHHHHHHH
Confidence            3566555444444332   346789999999999988877653   348999999994  454444444

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=96.46  E-value=0.0011  Score=55.92  Aligned_cols=34  Identities=18%  Similarity=0.090  Sum_probs=29.0

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      .+..+||+|||+|...+.+|+..  ..++++|+.+.
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~  157 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTP  157 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHH
Confidence            35689999999999999888864  48999999873

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=96.43  E-value=0.001  Score=55.19  Aligned_cols=34  Identities=35%  Similarity=0.479  Sum_probs=28.3

Q ss_pred             ccccEEEecCCCCCchhhhhhc-C-CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-g-a~Vv~tD~~~~  103 (141)
                      .+.+|||+|||+|..++.+++. + .+|+++|.++.
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~  148 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH  148 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHH
Confidence            4579999999999988877664 3 48999999884

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=96.41  E-value=0.00077  Score=47.81  Aligned_cols=43  Identities=16%  Similarity=0.119  Sum_probs=32.7

Q ss_pred             cEEEecCCCCCchhhhhhcCC--ceEEccCCccceeccccCCCchhh
Q 032395           73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        73 ~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      .+||+|||.|..++.+++.+.  +|++.|-++.  ..+.++.|...|
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~--~~~~l~~~~~~n   45 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPD--AYEILEENVKLN   45 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHH--HHHHHHHHHHHc
Confidence            489999999999999888775  6999999984  444444444433

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=96.40  E-value=0.0035  Score=50.19  Aligned_cols=50  Identities=22%  Similarity=0.256  Sum_probs=39.8

Q ss_pred             HHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccc-eecc
Q 032395           59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI-ELLM  108 (141)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~-~~l~  108 (141)
                      .+.+......-++..|||+|+|.|.++..+++.+++|++.++++.+ +.|.
T Consensus        19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~   69 (259)
T COG0030          19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLK   69 (259)
T ss_pred             HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHH
Confidence            4445554455567899999999999999999999999999999953 4444

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=96.39  E-value=0.0014  Score=55.65  Aligned_cols=43  Identities=16%  Similarity=0.064  Sum_probs=33.1

Q ss_pred             ccccEEEecCCCCCchhhhhhc---CCceEEccCCccceeccccCCCc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      ++++|||+|||+|..++.+++.   ..+|++.|+++.  .++.++.|+
T Consensus       250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~--~l~~~~~n~  295 (444)
T PRK14902        250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEH--KLKLIEENA  295 (444)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHH
Confidence            5789999999999999988765   249999999984  444444443

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=96.39  E-value=0.0012  Score=52.52  Aligned_cols=34  Identities=15%  Similarity=0.137  Sum_probs=27.0

Q ss_pred             ccccEEEecCCCCCchhhhhhc-----CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-----GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-----ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..+..+++.     +.+|+++|+++.
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~  123 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKV  123 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHH
Confidence            3468999999999988776653     237999999984

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=96.37  E-value=0.0063  Score=48.24  Aligned_cols=54  Identities=19%  Similarity=0.169  Sum_probs=41.9

Q ss_pred             hHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccc-eecc
Q 032395           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI-ELLM  108 (141)
Q Consensus        55 s~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~-~~l~  108 (141)
                      ...+++.+......-++..|||+|+|+|.++-.+++.+++|++.|.++.+ +.|+
T Consensus        15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~   69 (262)
T PF00398_consen   15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLK   69 (262)
T ss_dssp             HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHH
Confidence            34455555555444478999999999999999999999999999999953 3444

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=96.36  E-value=0.0012  Score=52.70  Aligned_cols=48  Identities=17%  Similarity=0.219  Sum_probs=39.6

Q ss_pred             cccccccEEEecCCCCCchhhhhh-cCC-ceEEccCCccceeccccCCCchh
Q 032395           67 YRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~l~~a~-~ga-~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      ..|.++.+||+||-+|.+++.+|+ .|+ .|++.|+++.  +++.++.|+..
T Consensus        55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~--LI~~Ark~~r~  104 (288)
T KOG2899|consen   55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPV--LIQRARKEIRF  104 (288)
T ss_pred             cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHH--HHHHHHHhccc
Confidence            467889999999999999998887 466 8999999995  66666666544

>PHA01634 hypothetical protein

Probab=96.32  E-value=0.0017  Score=47.28  Aligned_cols=36  Identities=14%  Similarity=0.120  Sum_probs=33.4

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      .+++|+|+++|++.|-.+|+.+..|| +|++.+.++.
T Consensus        26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~k   62 (156)
T PHA01634         26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEK   62 (156)
T ss_pred             eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHH
Confidence            56899999999999999999999999 8999999884

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=96.30  E-value=0.0039  Score=48.91  Aligned_cols=56  Identities=14%  Similarity=0.039  Sum_probs=42.2

Q ss_pred             cceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        47 ~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      +|++.=.....|.+|+...... ++.+||..|||.|.=.+.+|..|.+|++.|+++.
T Consensus        21 ~~f~~~~pnp~L~~~~~~l~~~-~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~   76 (226)
T PRK13256         21 VGFCQESPNEFLVKHFSKLNIN-DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEK   76 (226)
T ss_pred             CCCccCCCCHHHHHHHHhcCCC-CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHH
Confidence            4443333455666666543221 5689999999999999999999999999999994

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=96.29  E-value=0.0016  Score=51.90  Aligned_cols=41  Identities=15%  Similarity=0.119  Sum_probs=29.4

Q ss_pred             cccEEEecCCCCC----chhhhhhc-------CCceEEccCCccceeccccCCC
Q 032395           71 GANVVELGAGTSL----PGLVAAKV-------GSNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        71 ~~~vLELG~GtGl----~~l~~a~~-------ga~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      +.+|+++|||||-    +++.++..       +.+|++||+++.  .|+.++.+
T Consensus       100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~--~L~~Ar~~  151 (264)
T smart00138      100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLK--ALEKARAG  151 (264)
T ss_pred             CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHH--HHHHHHcC
Confidence            4589999999996    45555443       248999999994  56555444

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=96.27  E-value=0.0013  Score=50.25  Aligned_cols=46  Identities=24%  Similarity=0.314  Sum_probs=39.4

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCch
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      .+.|.++|||=||+|.+|+-|...|| ++++.|.+.  +....++.|++
T Consensus        41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~--~a~~~l~~N~~   87 (187)
T COG0742          41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDR--KAVKILKENLK   87 (187)
T ss_pred             ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCH--HHHHHHHHHHH
Confidence            47999999999999999999999999 999999998  45555566644

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=96.18  E-value=0.0037  Score=39.89  Aligned_cols=31  Identities=39%  Similarity=0.406  Sum_probs=26.2

Q ss_pred             cEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           73 NVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        73 ~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      +++|+|||+|..+..+++. ..+++++|.++.
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~   32 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPV   32 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHH
Confidence            5899999999998888873 349999999984

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK00811 spermidine synthase; Provisional

Probab=96.16  E-value=0.0024  Score=51.32  Aligned_cols=41  Identities=17%  Similarity=0.161  Sum_probs=32.0

Q ss_pred             ccccEEEecCCCCCchhhhhhc-CC-ceEEccCCccceeccccCC
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIELLMTSLP  112 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-ga-~Vv~tD~~~~~~~l~n~~~  112 (141)
                      +.++||++|||.|..+..+++. +. +|++.|+++.  +++.+++
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~--vv~~a~~  118 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDER--VVEVCRK  118 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHH--HHHHHHH
Confidence            4579999999999998877776 44 8999999994  4443333

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=96.10  E-value=0.0015  Score=51.90  Aligned_cols=44  Identities=7%  Similarity=0.029  Sum_probs=33.3

Q ss_pred             ccccEEEecCCCCCchhhhhhc-C--CceEEccCCccceeccccCCCch
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      ++.+|||+|||+|-.++.++.. +  ..|++.|.++.  .++.++.|+.
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~--~l~~~~~n~~  117 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKS--RTKVLIANIN  117 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHH--HHHHHHHHHH
Confidence            6789999999999999877664 2  38999999984  4444444443

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=96.07  E-value=0.0027  Score=53.69  Aligned_cols=44  Identities=9%  Similarity=-0.000  Sum_probs=33.9

Q ss_pred             ccccEEEecCCCCCchhhhhhc-C-CceEEccCCccceeccccCCCch
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-g-a~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      +|.+|||+|||+|..++.++.. + ++|++.|.++.  .++.++.|+.
T Consensus       238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~--~l~~~~~n~~  283 (426)
T TIGR00563       238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEH--RLKRVYENLK  283 (426)
T ss_pred             CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHH--HHHHHHHHHH
Confidence            6789999999999999888764 3 59999999984  4444444443

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=95.98  E-value=0.0035  Score=53.22  Aligned_cols=45  Identities=16%  Similarity=0.116  Sum_probs=34.0

Q ss_pred             cccccEEEecCCCCCchhhhhhc-C--CceEEccCCccceeccccCCCch
Q 032395           69 FSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      -+|.+|||+|||+|..++.++.. +  .+|++.|.++.  .++.++.|+.
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~--rl~~~~~n~~  298 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSAS--RLKKLQENAQ  298 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHH--HHHHHHHHHH
Confidence            36789999999999999888765 2  38999999984  4444444443

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=95.93  E-value=0.0026  Score=51.90  Aligned_cols=47  Identities=21%  Similarity=0.215  Sum_probs=31.0

Q ss_pred             ccEEEecCCCCCc-hhhhhh-cCCceEEccCCccceeccccCCCchhhhhh
Q 032395           72 ANVVELGAGTSLP-GLVAAK-VGSNVTLTDDSNRIELLMTSLPPSHICSRV  120 (141)
Q Consensus        72 ~~vLELG~GtGl~-~l~~a~-~ga~Vv~tD~~~~~~~l~n~~~N~~~n~~~  120 (141)
                      -++||+|+|.-.+ .|+.++ .+.++++||+++  +.++.++.|+..|..+
T Consensus       104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~--~sl~~A~~nv~~N~~L  152 (299)
T PF05971_consen  104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDIDP--KSLESARENVERNPNL  152 (299)
T ss_dssp             -EEEEES-TTTTHHHHHHHHHH--EEEEEES-H--HHHHHHHHHHHHT-T-
T ss_pred             eEeecCCccHHHHHHHHhhhhcCCeEEEecCCH--HHHHHHHHHHHhcccc
Confidence            4799999996544 555554 577999999999  5788888888877433

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PRK04457 spermidine synthase; Provisional

Probab=95.91  E-value=0.0021  Score=51.15  Aligned_cols=34  Identities=9%  Similarity=0.121  Sum_probs=28.5

Q ss_pred             ccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~  103 (141)
                      +.++||++|||+|.++..+++.  +.+|++.|+++.
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~  101 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQ  101 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHH
Confidence            4579999999999999877664  348999999984

>KOG2497 consensus Predicted methyltransferase [General function prediction only]

Probab=95.83  E-value=0.0012  Score=52.91  Aligned_cols=56  Identities=29%  Similarity=0.340  Sum_probs=47.0

Q ss_pred             cccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccC
Q 032395           45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDD  100 (141)
Q Consensus        45 ~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~  100 (141)
                      ..+|..+|+++..|.+++.+++..++++++.++|||+++..+.+++...-|...+-
T Consensus        65 ~~tg~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~  120 (262)
T KOG2497|consen   65 ARTGLSVWESALSLEADLRDKPDLSSELTVEELGCDIALKHVLAARVPDCVVTLDS  120 (262)
T ss_pred             HHhccccchHHHHHHHHHhhCcccccccchHhhccCHHHHHHHHHhcccceecCCc
Confidence            57899999999999999999998889999999999999999777776654444333

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=95.80  E-value=0.0032  Score=50.21  Aligned_cols=51  Identities=20%  Similarity=0.174  Sum_probs=38.4

Q ss_pred             hhhcccccccEEEecCCCCCchhhhhhc-CC--ceEEccCCccceeccccCCCchh
Q 032395           64 QQRYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        64 ~~~~~~~~~~vLELG~GtGl~~l~~a~~-ga--~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      .......|.+|||-|.|+|.++.++|+. |.  +|+..|+.+  +.++.+++|...
T Consensus        88 ~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~--d~~k~A~~Nl~~  141 (256)
T COG2519          88 ARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIRE--DFAKTARENLSE  141 (256)
T ss_pred             HHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecH--HHHHHHHHHHHH
Confidence            3334568999999999999999999863 43  999999988  455555555443

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=95.79  E-value=0.0041  Score=52.88  Aligned_cols=45  Identities=13%  Similarity=0.052  Sum_probs=34.3

Q ss_pred             cccccEEEecCCCCCchhhhhhc---CCceEEccCCccceeccccCCCch
Q 032395           69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      -+|.+|||+|||+|-.++.++..   +.+|++.|.++.  .++.++.|+.
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~--rl~~~~~n~~  283 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISRE--KIQLVEKHAK  283 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHH--HHHHHHHHHH
Confidence            36789999999999998877764   349999999984  4554444443

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=95.71  E-value=0.011  Score=45.98  Aligned_cols=49  Identities=27%  Similarity=0.197  Sum_probs=39.1

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ....|.+|+... ..-.+.+||.-|||.|.=.+.+|..|.+|++.|+++.
T Consensus        22 ~~p~L~~~~~~l-~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~   70 (218)
T PF05724_consen   22 PNPALVEYLDSL-ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPT   70 (218)
T ss_dssp             STHHHHHHHHHH-TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HH
T ss_pred             CCHHHHHHHHhc-CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHH
Confidence            356677777662 2225569999999999999999999999999999994

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=95.68  E-value=0.013  Score=48.87  Aligned_cols=35  Identities=26%  Similarity=0.227  Sum_probs=32.3

Q ss_pred             cccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .+|+++|||||++|-.+-.+.+.|++|+++|..+.
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l  244 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPM  244 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhc
Confidence            47899999999999999999999999999998773

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=95.65  E-value=0.0038  Score=51.84  Aligned_cols=47  Identities=19%  Similarity=0.135  Sum_probs=40.7

Q ss_pred             cccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ..|.+|+|+=||.|-.+|.+|+.|+ +|++.|+||  ...+-+++|+.+|
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP--~A~~~L~eNi~LN  234 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINP--DAVEYLKENIRLN  234 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCCceEEEEecCH--HHHHHHHHHHHhc
Confidence            3688999999999999999999998 599999999  4666666777776

>PTZ00146 fibrillarin; Provisional

Probab=95.57  E-value=0.013  Score=47.73  Aligned_cols=58  Identities=22%  Similarity=0.169  Sum_probs=41.1

Q ss_pred             ccceeeeehhH-HHHHHHHhhh---cccccccEEEecCCCCCchhhhhhc-C--CceEEccCCcc
Q 032395           46 EYGLFVWPCSV-ILAEYVWQQR---YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNR  103 (141)
Q Consensus        46 ~~g~~~W~as~-~la~~l~~~~---~~~~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~  103 (141)
                      ...+++|+.-. -||.-+....   .+-++.+|||||||+|..+..++.. +  .+|++.|+++.
T Consensus       104 ~~eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r  168 (293)
T PTZ00146        104 KIEYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHR  168 (293)
T ss_pred             cceeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHH
Confidence            44589998532 2444443322   2336789999999999999988876 3  28999999973

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=95.54  E-value=0.0047  Score=53.15  Aligned_cols=30  Identities=30%  Similarity=0.520  Sum_probs=27.2

Q ss_pred             cEEEecCCCCCchhhhhhcCC-ceEEccCCc
Q 032395           73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSN  102 (141)
Q Consensus        73 ~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~  102 (141)
                      .||++|+|||++++.|++.|+ .|++.+.-.
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~Evfk   99 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFK   99 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhc
Confidence            589999999999999999999 899887655

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=95.53  E-value=0.017  Score=43.91  Aligned_cols=54  Identities=30%  Similarity=0.263  Sum_probs=44.3

Q ss_pred             eeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC---ceEEccCCcc
Q 032395           50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNR  103 (141)
Q Consensus        50 ~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga---~Vv~tD~~~~  103 (141)
                      .+=|+|-.+|+-|...-..-+|+-|||||.|||...=...+.|.   .+++.++++.
T Consensus        28 aI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~d   84 (194)
T COG3963          28 AILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPD   84 (194)
T ss_pred             eecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHH
Confidence            34588999999988865555889999999999999877776663   7899999984

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=95.49  E-value=0.012  Score=45.97  Aligned_cols=32  Identities=28%  Similarity=0.510  Sum_probs=27.3

Q ss_pred             cccEEEecCCCCCchhhhhhcCC--ceEEccCCc
Q 032395           71 GANVVELGAGTSLPGLVAAKVGS--NVTLTDDSN  102 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~  102 (141)
                      +++++|+|+|.|++|+.+|-...  +|+..|-..
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~  101 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLG  101 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCc
Confidence            68999999999999998885543  799988776

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=95.31  E-value=0.0049  Score=52.07  Aligned_cols=49  Identities=24%  Similarity=0.095  Sum_probs=44.3

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhhh
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHICS  118 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n~  118 (141)
                      ..+|++||+|=|=||-.|+.||+.|| +|+..|++.  ..|+.+++|..+|+
T Consensus       215 ~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~--~al~~a~~N~~LNg  264 (393)
T COG1092         215 LAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSK--RALEWARENAELNG  264 (393)
T ss_pred             hccCCeEEEecccCcHHHHHHHhcCCCceEEEeccH--HHHHHHHHHHHhcC
Confidence            34799999999999999999999999 999999999  58888888888884

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=95.18  E-value=0.034  Score=42.28  Aligned_cols=30  Identities=30%  Similarity=0.620  Sum_probs=25.9

Q ss_pred             cEEEecCCCCCchhhhhhcCC--ceEEccCCc
Q 032395           73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSN  102 (141)
Q Consensus        73 ~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~  102 (141)
                      +++|+|+|.|++||.+|-+..  +|++.|-..
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~   82 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVG   82 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSH
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCc
Confidence            799999999999998887654  799999877

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=95.13  E-value=0.006  Score=48.48  Aligned_cols=53  Identities=15%  Similarity=0.103  Sum_probs=35.0

Q ss_pred             HHhhhcccccccEEEecCCCCCchhhhhhc-CC--ceEEccCCccceeccccCCCchh
Q 032395           62 VWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        62 l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-ga--~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      |.....+.+|.+|||-|.|+|.+++++++. +.  +|+..|+.+  +..+.++.|+..
T Consensus        32 I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~--~~~~~A~~n~~~   87 (247)
T PF08704_consen   32 ILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFRE--DRAEKARKNFER   87 (247)
T ss_dssp             HHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSH--HHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCH--HHHHHHHHHHHH
Confidence            444445668999999999999999998874 32  999999998  345555554443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=95.11  E-value=0.009  Score=46.75  Aligned_cols=47  Identities=13%  Similarity=0.080  Sum_probs=37.7

Q ss_pred             ccccccEEEecCCCCCchhhhhh-cC--CceEEccCCccceeccccCCCchh
Q 032395           68 RFSGANVVELGAGTSLPGLVAAK-VG--SNVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~-~g--a~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      ....|+|||+|.+.|..++.+|. +.  .+++.+|.++  +..+.+++|+..
T Consensus        57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~--e~~~~A~~n~~~  106 (219)
T COG4122          57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDE--ERAEIARENLAE  106 (219)
T ss_pred             hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCH--HHHHHHHHHHHH
Confidence            33779999999999999998776 33  3899999999  567777777654

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=95.04  E-value=0.03  Score=45.52  Aligned_cols=37  Identities=22%  Similarity=0.191  Sum_probs=32.9

Q ss_pred             cccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ..-+...|||+|-|||.++..+...|++|++.++++.
T Consensus        55 ~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dpr   91 (315)
T KOG0820|consen   55 DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPR   91 (315)
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcH
Confidence            3335679999999999999999999999999999995

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=95.02  E-value=0.011  Score=45.63  Aligned_cols=32  Identities=19%  Similarity=0.122  Sum_probs=26.1

Q ss_pred             ccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        72 ~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .++||+|||.|.++..+|....+++++|.++.
T Consensus        45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~   76 (201)
T PF05401_consen   45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPR   76 (201)
T ss_dssp             EEEEEE--TTSHHHHHHGGGEEEEEEEES-HH
T ss_pred             ceeEecCCCccHHHHHHHHhhCceEEEeCCHH
Confidence            47999999999999988888779999999983

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=95.00  E-value=0.015  Score=44.61  Aligned_cols=34  Identities=15%  Similarity=0.087  Sum_probs=27.0

Q ss_pred             ccccEEEecCCCCCchhhhhh-cCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~-~ga~Vv~tD~~~~  103 (141)
                      +|.+|||||||.|-+--.+.. .+.+..+.|+++.
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~   47 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPD   47 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHH
Confidence            678999999999977655544 5668999999984

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=94.92  E-value=0.015  Score=45.86  Aligned_cols=34  Identities=26%  Similarity=0.305  Sum_probs=28.5

Q ss_pred             cccEEEecCCCCCchhhhhhc--CCceEEccCCccc
Q 032395           71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRI  104 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~  104 (141)
                      -.+|.|||||+|...-.+++.  ++.++++|-++.|
T Consensus        31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~M   66 (257)
T COG4106          31 PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAM   66 (257)
T ss_pred             cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHH
Confidence            458999999999998877765  4699999999954

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=94.85  E-value=0.031  Score=41.38  Aligned_cols=50  Identities=22%  Similarity=0.107  Sum_probs=36.2

Q ss_pred             hhHHHHHHHHhhhcc-c-ccccEEEecCCCCCchhhhhhcC---CceEEccCCcc
Q 032395           54 CSVILAEYVWQQRYR-F-SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNR  103 (141)
Q Consensus        54 as~~la~~l~~~~~~-~-~~~~vLELG~GtGl~~l~~a~~g---a~Vv~tD~~~~  103 (141)
                      |+.-|.+........ . ++.+||||||++|-.+-++.+.+   .+|++.|+.+.
T Consensus         5 a~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen    5 AAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             HHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             HHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            445555555554311 1 34899999999999999998887   49999999984

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=94.80  E-value=0.0058  Score=49.58  Aligned_cols=48  Identities=23%  Similarity=0.138  Sum_probs=40.8

Q ss_pred             cccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhhh
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHICS  118 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n~  118 (141)
                      .+|++||+|=|=||-.|+.+++.|| +|+..|.+.  ..++..+.|..+|+
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~--~al~~a~~N~~lNg  170 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSK--RALEWAKENAALNG  170 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-H--HHHHHHHHHHHHTT
T ss_pred             cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHcC
Confidence            4789999999999999999999999 899999998  57888888888774

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=94.70  E-value=0.011  Score=46.92  Aligned_cols=54  Identities=17%  Similarity=0.143  Sum_probs=37.8

Q ss_pred             HHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCccceeccccCCCc
Q 032395           59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      +.++.......+-++|||+|+++|..++.+|..   +.+|+.+|.++.  ..+..+.|+
T Consensus        68 g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~--~~~~Ar~~~  124 (247)
T PLN02589         68 GQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRE--NYELGLPVI  124 (247)
T ss_pred             HHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHH--HHHHHHHHH
Confidence            344444334456789999999999999988763   349999999983  344444444

>PRK03612 spermidine synthase; Provisional

Probab=94.65  E-value=0.015  Score=50.69  Aligned_cols=42  Identities=24%  Similarity=0.181  Sum_probs=33.1

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCC
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      +.++||++|||+|.....+++.+  .+|++.|+++.  +++.+++|
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~--vi~~ar~~  340 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPA--MTELARTS  340 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHH--HHHHHHhC
Confidence            46799999999999988777765  49999999994  45544443

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.51  E-value=0.016  Score=48.00  Aligned_cols=79  Identities=25%  Similarity=0.340  Sum_probs=52.0

Q ss_pred             eeeeeeeecCCCCCCceehhhhhhcccccceeeeehhHHHHHHHHhhhcccccccEEEecCC-CCCchhhhhh-cCC-ce
Q 032395           19 TTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NV   95 (141)
Q Consensus        19 ~~~~~~~f~~~~~~~~~~i~i~~~~~~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~G-tGl~~l~~a~-~ga-~V   95 (141)
                      -+..+|+-+.    ..+-.++.++.+.+-|..+=|  +..+-+-.+....-.|.+||-+||| .|++.+.+|+ +|| +|
T Consensus       124 G~la~y~~~~----~dfc~KLPd~vs~eeGAl~eP--LsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~V  197 (354)
T KOG0024|consen  124 GTLAEYYVHP----ADFCYKLPDNVSFEEGALIEP--LSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDV  197 (354)
T ss_pred             CceEEEEEec----hHheeeCCCCCchhhcccccc--hhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcE
Confidence            3445555554    344566666655555554433  2233333343444578899999999 8999998888 588 99


Q ss_pred             EEccCCcc
Q 032395           96 TLTDDSNR  103 (141)
Q Consensus        96 v~tD~~~~  103 (141)
                      +++|..+.
T Consensus       198 Vi~d~~~~  205 (354)
T KOG0024|consen  198 VITDLVAN  205 (354)
T ss_pred             EEeecCHH
Confidence            99999984

>TIGR00417 speE spermidine synthase

Probab=94.18  E-value=0.014  Score=46.47  Aligned_cols=34  Identities=21%  Similarity=0.159  Sum_probs=27.8

Q ss_pred             ccccEEEecCCCCCchhhhhhcC-C-ceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG-S-NVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g-a-~Vv~tD~~~~  103 (141)
                      +.++||++|||+|..+..+++.. . +|+++|+++.
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~  107 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEK  107 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHH
Confidence            35699999999998877666654 3 8999999984

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=94.16  E-value=0.027  Score=46.54  Aligned_cols=53  Identities=21%  Similarity=0.186  Sum_probs=35.3

Q ss_pred             eeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        51 ~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      -|=.+..+..|+.......++.+|||||||-|-=-.-..+.+. .++++|++..
T Consensus        43 NwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~   96 (331)
T PF03291_consen   43 NWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEE   96 (331)
T ss_dssp             HHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HH
T ss_pred             HHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHH
Confidence            4778888888876543333778999999998754444444454 8999999984

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=94.14  E-value=0.0089  Score=44.74  Aligned_cols=42  Identities=14%  Similarity=0.027  Sum_probs=32.0

Q ss_pred             ccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCch
Q 032395           72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        72 ~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      +.|+|+-||.|--++..|+.+.+|+++|+++.  .++-++.|+.
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~--~~~~a~hNa~   42 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPE--RLECAKHNAE   42 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-EEEEEES-HH--HHHHHHHHHH
T ss_pred             CEEEEeccCcCHHHHHHHHhCCeEEEEECCHH--HHHHHHHHHH
Confidence            36899999999999999999999999999994  5555555544

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=94.10  E-value=0.033  Score=44.87  Aligned_cols=53  Identities=17%  Similarity=0.080  Sum_probs=36.9

Q ss_pred             cccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc--------CCceEEccCCcc
Q 032395           45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--------GSNVTLTDDSNR  103 (141)
Q Consensus        45 ~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~--------ga~Vv~tD~~~~  103 (141)
                      ....+++|.-      .........++.++||++||||-++....+.        ..+|++.|+++.
T Consensus        81 SlGiHRlWKd------~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~  141 (296)
T KOG1540|consen   81 SLGIHRLWKD------MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPH  141 (296)
T ss_pred             hcchhHHHHH------HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHH
Confidence            3556677743      1222223457789999999999998866442        248999999995

>PLN03075 nicotianamine synthase; Provisional

Probab=93.87  E-value=0.027  Score=45.93  Aligned_cols=42  Identities=17%  Similarity=0.046  Sum_probs=29.2

Q ss_pred             ccccEEEecCC-CCCchhhhh-hcC--CceEEccCCccceeccccCCC
Q 032395           70 SGANVVELGAG-TSLPGLVAA-KVG--SNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        70 ~~~~vLELG~G-tGl~~l~~a-~~g--a~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      ..++|+|+||| .|+.++.++ ...  .+++++|.++.  .++.++.+
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~--ai~~Ar~~  168 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPS--ANDVARRL  168 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHH
Confidence            67899999999 556666555 333  38999999994  44444433

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=93.59  E-value=0.048  Score=43.80  Aligned_cols=35  Identities=23%  Similarity=0.219  Sum_probs=30.9

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCccc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI  104 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~  104 (141)
                      +.+++||||||.|-++..++.+-.+|.+|+.+..|
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~M  128 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPM  128 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHH
Confidence            45689999999999999999888899999999854

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.34  E-value=0.14  Score=39.78  Aligned_cols=50  Identities=28%  Similarity=0.144  Sum_probs=39.4

Q ss_pred             ehhHHHHHHHHhhhccc-ccccEEEecCCCCCchhhhhhcC-C--ceEEccCCcc
Q 032395           53 PCSVILAEYVWQQRYRF-SGANVVELGAGTSLPGLVAAKVG-S--NVTLTDDSNR  103 (141)
Q Consensus        53 ~as~~la~~l~~~~~~~-~~~~vLELG~GtGl~~l~~a~~g-a--~Vv~tD~~~~  103 (141)
                      .+++-|.+...++ ..| ++++|+||||-.|-.+-+++++. +  +|++.|+.|.
T Consensus        28 RAa~KL~el~~k~-~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~   81 (205)
T COG0293          28 RAAYKLLELNEKF-KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM   81 (205)
T ss_pred             hHHHHHHHHHHhc-CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc
Confidence            4666777766666 444 56899999999999999888763 3  5999999994

>PLN02366 spermidine synthase

Probab=93.24  E-value=0.052  Score=44.40  Aligned_cols=34  Identities=12%  Similarity=0.117  Sum_probs=28.6

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      +.++||++|||.|.....+++..  .+|++.|+++.
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~  126 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKM  126 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHH
Confidence            45899999999999888777764  38999999984

>PRK01581 speE spermidine synthase; Validated

Probab=92.89  E-value=0.036  Score=46.63  Aligned_cols=34  Identities=26%  Similarity=0.230  Sum_probs=28.4

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      ..++||++|||+|.....+.+..  .+|++.|+++.
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpe  185 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGS  185 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHH
Confidence            45799999999998777777765  39999999995

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=92.60  E-value=0.12  Score=40.00  Aligned_cols=38  Identities=24%  Similarity=0.206  Sum_probs=28.0

Q ss_pred             cccEEEecCCCCCchhhhhhcC--CceEEccCCccceecc
Q 032395           71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLM  108 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~  108 (141)
                      .++|+|+|+|+|..++.+++.-  .++++.|+..+++..+
T Consensus       101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~  140 (241)
T PF00891_consen  101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAK  140 (241)
T ss_dssp             SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHH
T ss_pred             ccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccc
Confidence            4689999999999998777653  3899999987644433

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.28  E-value=0.059  Score=42.29  Aligned_cols=69  Identities=19%  Similarity=0.157  Sum_probs=44.3

Q ss_pred             ccceeeeehhHHHHHHHHhhh--cccccccEEEecCCCCCchhhhhh-cCC---ceEEccCCccceeccccCCCchh
Q 032395           46 EYGLFVWPCSVILAEYVWQQR--YRFSGANVVELGAGTSLPGLVAAK-VGS---NVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        46 ~~g~~~W~as~~la~~l~~~~--~~~~~~~vLELG~GtGl~~l~~a~-~ga---~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      ..|+.+-=+++.+=.++....  ...+|.+.|++|+|+|.++-.+++ .++   .++++|.-+  ++++..++|+..
T Consensus        56 ~~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~--eLVe~Sk~nl~k  130 (237)
T KOG1661|consen   56 KIGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIP--ELVEYSKKNLDK  130 (237)
T ss_pred             ccCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhH--HHHHHHHHHHHh
Confidence            344333335555544444432  244899999999999999877774 344   458999887  466666666543

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=92.25  E-value=0.075  Score=43.35  Aligned_cols=34  Identities=9%  Similarity=-0.088  Sum_probs=29.4

Q ss_pred             ccccEEEecCCCCCchhhhhhcC---CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g---a~Vv~tD~~~~  103 (141)
                      ++..+||.+||.|--+..+++..   .+|++.|.++.
T Consensus        19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~   55 (296)
T PRK00050         19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPD   55 (296)
T ss_pred             CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHH
Confidence            56799999999999999888763   48999999994

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=91.95  E-value=0.11  Score=39.69  Aligned_cols=32  Identities=19%  Similarity=0.173  Sum_probs=25.4

Q ss_pred             ccEEEecCCCCCchhhhhhcCC--ceEEccCCcc
Q 032395           72 ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNR  103 (141)
Q Consensus        72 ~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~  103 (141)
                      ..+||+|||.|-..+..|+.-.  .+++.|....
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~   52 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKK   52 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HH
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchH
Confidence            4899999999999888887644  8999999874

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=91.87  E-value=0.073  Score=42.51  Aligned_cols=43  Identities=21%  Similarity=0.132  Sum_probs=30.2

Q ss_pred             cEEEecCCCCCchhhhhhcC----CceEEccCCccceeccccCCCchhh
Q 032395           73 NVVELGAGTSLPGLVAAKVG----SNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        73 ~vLELG~GtGl~~l~~a~~g----a~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      +|||+|||.|-...-+.+-.    -+|.+.|.++.  +++..+.|...+
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~--Ai~~vk~~~~~~  120 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPR--AIELVKKSSGYD  120 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChH--HHHHHHhccccc
Confidence            69999999998877555432    37999999994  444444444333

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=91.81  E-value=0.19  Score=35.40  Aligned_cols=31  Identities=23%  Similarity=0.214  Sum_probs=27.5

Q ss_pred             ccEEEecCCCCCchhhhhhcCCceEEccCCc
Q 032395           72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSN  102 (141)
Q Consensus        72 ~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~  102 (141)
                      ...+|||||-|++--.+.+-|.+=.+.|...
T Consensus        60 ~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~   90 (112)
T PF07757_consen   60 QGFVDLGCGNGLLVYILNSEGYPGWGIDARR   90 (112)
T ss_pred             CceEEccCCchHHHHHHHhCCCCcccccccc
Confidence            4789999999999999999998888888865

; GO: 0008168 methyltransferase activity

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=91.80  E-value=0.077  Score=41.72  Aligned_cols=45  Identities=22%  Similarity=0.245  Sum_probs=32.9

Q ss_pred             cEEEecCCCCCchhhhh-hcCCceEEccCCccc-eecc-ccCCCchhh
Q 032395           73 NVVELGAGTSLPGLVAA-KVGSNVTLTDDSNRI-ELLM-TSLPPSHIC  117 (141)
Q Consensus        73 ~vLELG~GtGl~~l~~a-~~ga~Vv~tD~~~~~-~~l~-n~~~N~~~n  117 (141)
                      .|||+|||||---=+.- +.+..|++.|-++.| +.+. .+++|...+
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~  126 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQ  126 (252)
T ss_pred             ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcc
Confidence            58999999997655443 346699999999976 4444 666666555

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=91.73  E-value=0.11  Score=43.28  Aligned_cols=59  Identities=19%  Similarity=0.045  Sum_probs=49.4

Q ss_pred             hHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCch
Q 032395           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        55 s~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      ...||..+.+....-+|..|||==||||-.-+.+...|++|+++|++..  .++-++.|.+
T Consensus       182 ~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~--mv~gak~Nl~  240 (347)
T COG1041         182 DPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDER--MVRGAKINLE  240 (347)
T ss_pred             CHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHH--HHhhhhhhhh
Confidence            3468888888777778999999999999999999999999999999984  5555666654

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=90.86  E-value=0.086  Score=45.73  Aligned_cols=34  Identities=12%  Similarity=0.108  Sum_probs=26.4

Q ss_pred             ccccEEEecCCCCCchhhhhhcC----------CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG----------SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g----------a~Vv~tD~~~~  103 (141)
                      ...+|||.+||+|...+.++...          .++++.|+++.
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~   74 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKT   74 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHH
Confidence            34689999999999988665421          36899999884

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PLN02823 spermine synthase

Probab=90.66  E-value=0.14  Score=42.50  Aligned_cols=42  Identities=12%  Similarity=0.101  Sum_probs=31.3

Q ss_pred             ccccEEEecCCCCCchhhhhhcC-C-ceEEccCCccceeccccCCC
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG-S-NVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g-a-~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      +.++||.+|+|.|.....+.+.. . +|++.|+++.  +++.++++
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~--vv~lar~~  146 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQE--VVDFCRKH  146 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHH--HHHHHHHh
Confidence            34799999999998887776653 3 8999999994  44444333

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=90.30  E-value=0.25  Score=38.33  Aligned_cols=31  Identities=19%  Similarity=0.276  Sum_probs=25.2

Q ss_pred             cEEEecCCCCCchhhhhhc-CC-ceEEccCCcc
Q 032395           73 NVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNR  103 (141)
Q Consensus        73 ~vLELG~GtGl~~l~~a~~-ga-~Vv~tD~~~~  103 (141)
                      +|||+|||||--+.+.|+. .. ...-+|.++.
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~   60 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDN   60 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChH
Confidence            6999999999999977764 33 6778888874

The function of this family is unknown.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=90.10  E-value=0.1  Score=41.95  Aligned_cols=50  Identities=10%  Similarity=0.014  Sum_probs=34.7

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc---------CCceEEccCCcc
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---------GSNVTLTDDSNR  103 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---------ga~Vv~tD~~~~  103 (141)
                      +...++++|.......++.+|+|-.||+|-.-+.+.+.         ..++++.|+++.
T Consensus        30 TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~   88 (311)
T PF02384_consen   30 TPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPE   88 (311)
T ss_dssp             --HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HH
T ss_pred             hHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHH
Confidence            55667788877665557789999999999877666542         338999999985

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK10742 putative methyltransferase; Provisional

Probab=89.47  E-value=0.27  Score=39.30  Aligned_cols=31  Identities=29%  Similarity=0.402  Sum_probs=30.0

Q ss_pred             cEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        73 ~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      +|||+-+|+|..|+.++..|++|++.|.++.
T Consensus        91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~  121 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASVGCRVRMLERNPV  121 (250)
T ss_pred             EEEECCCCccHHHHHHHHcCCEEEEEECCHH
Confidence            8999999999999999999999999999995

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=89.45  E-value=0.088  Score=40.66  Aligned_cols=41  Identities=15%  Similarity=0.093  Sum_probs=32.3

Q ss_pred             EEEecCCCCCchhhhhhcCC--ceEEccCCccceeccccCCCchh
Q 032395           74 VVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        74 vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      |.|+||--|.+++.+.+.|.  +++++|+++.  -+++++.|+..
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~g--pL~~A~~~i~~   43 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPG--PLEKAKENIAK   43 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHH--HHHHHHHHHHH
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHHHH
Confidence            67999999999999999987  8999999994  45555555443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=88.94  E-value=0.58  Score=33.70  Aligned_cols=44  Identities=27%  Similarity=0.296  Sum_probs=27.8

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCC-chhhhhhcCCceEEccCCcc
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSL-PGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl-~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .+|+|+....   ...+|+|+|-|-=. ++..+...|..|++||.++.
T Consensus         3 ~~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~   47 (127)
T PF03686_consen    3 DFAEYIARLN---NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR   47 (127)
T ss_dssp             HHHHHHHHHS----SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S
T ss_pred             hHHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc
Confidence            5778887632   33499999999433 35566678899999999984

; PDB: 2K4M_A.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=87.69  E-value=0.48  Score=38.00  Aligned_cols=42  Identities=17%  Similarity=0.250  Sum_probs=37.0

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCC
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      +|.+|||--.|.|..++.+++.|| +|+-.+.+++  +|+....|
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~--VLeLa~lN  176 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPN--VLELAKLN  176 (287)
T ss_pred             cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCC--eEEeeccC
Confidence            688999999999999999999999 9999999994  66655555

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=87.61  E-value=0.2  Score=41.30  Aligned_cols=67  Identities=15%  Similarity=0.116  Sum_probs=47.6

Q ss_pred             eeeeehhHHHHHH---HHhhh--c-ccccccEEEecCCCCCchh-hhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395           49 LFVWPCSVILAEY---VWQQR--Y-RFSGANVVELGAGTSLPGL-VAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        49 ~~~W~as~~la~~---l~~~~--~-~~~~~~vLELG~GtGl~~l-~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ...|++...|-.+   ..+.+  . .-.+..|.||=+|-|...+ ++.++|| .|++.|.+|.  .++.+++|++.|
T Consensus       167 ~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~--svEaLrR~~~~N  241 (351)
T KOG1227|consen  167 TQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPW--SVEALRRNAEAN  241 (351)
T ss_pred             EEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHH--HHHHHHHHHHhc
Confidence            3689987766554   11111  1 1146789999999999999 9999999 8999999994  555555555555

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=87.47  E-value=0.42  Score=37.53  Aligned_cols=32  Identities=22%  Similarity=0.064  Sum_probs=27.3

Q ss_pred             ccEEEecCCCCCchhhhhhcCC--ceEEccCCcc
Q 032395           72 ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNR  103 (141)
Q Consensus        72 ~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~  103 (141)
                      ..+||+|||.|-.-+..|+...  .+++++....
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~   83 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVP   83 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehH
Confidence            4899999999999888888765  7899998873

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=87.18  E-value=0.52  Score=39.37  Aligned_cols=34  Identities=26%  Similarity=0.262  Sum_probs=27.8

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      ++..+++||||-|-=.+-.-+.|. .++++|+.++
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAev  151 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEV  151 (389)
T ss_pred             cccccceeccCCcccHhHhhhhcccceEeeehhhc
Confidence            456789999999976666667776 8999999985

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=86.65  E-value=0.69  Score=35.70  Aligned_cols=34  Identities=18%  Similarity=0.113  Sum_probs=24.3

Q ss_pred             ccccEEEecCCCCCchhhhhh-cCC-ceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~-~ga-~Vv~tD~~~~  103 (141)
                      ++...+|||||.|-+-+.+|. .+. +++++++.+.
T Consensus        42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~   77 (205)
T PF08123_consen   42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPE   77 (205)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechH
Confidence            577999999999999886664 566 6999999984

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=86.07  E-value=0.18  Score=37.77  Aligned_cols=56  Identities=18%  Similarity=0.085  Sum_probs=36.9

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCc-----------eEEccCCccceeccccCCCch
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSN-----------VTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~-----------Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      +|.-|......-++..+||-=||+|-+-+.++..+..           +++.|+++.  .++.++.|..
T Consensus        16 lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~--~v~~a~~N~~   82 (179)
T PF01170_consen   16 LAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPK--AVRGARENLK   82 (179)
T ss_dssp             HHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHH--HHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHH--HHHHHHHHHH
Confidence            4455555444446789999999999999888877653           669999984  5555555544

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=85.87  E-value=0.6  Score=37.37  Aligned_cols=36  Identities=22%  Similarity=0.407  Sum_probs=25.5

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      .++|.++||+|||.-+--++.|..-+ +++++|+.+.
T Consensus        54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~   90 (256)
T PF01234_consen   54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQ   90 (256)
T ss_dssp             SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHH
T ss_pred             CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHh
Confidence            34778999999999887766665544 8999999984

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=85.11  E-value=0.9  Score=36.37  Aligned_cols=38  Identities=21%  Similarity=0.238  Sum_probs=27.4

Q ss_pred             cccccccEEEecCCCCCchhhhhh-cC-C-ceEEccCCccc
Q 032395           67 YRFSGANVVELGAGTSLPGLVAAK-VG-S-NVTLTDDSNRI  104 (141)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~l~~a~-~g-a-~Vv~tD~~~~~  104 (141)
                      ..|+.++|||+|||+|....++.. .+ . ++++.|.++.+
T Consensus        30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~   70 (274)
T PF09243_consen   30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEM   70 (274)
T ss_pred             cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHH
Confidence            357788999999999965444433 22 2 89999998853

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=84.05  E-value=0.25  Score=39.00  Aligned_cols=32  Identities=28%  Similarity=0.203  Sum_probs=26.8

Q ss_pred             ccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        72 ~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      +++||||+|-|-++..++..-.+|.+|+++.-
T Consensus       114 ~~lLDlGAGdGeit~~m~p~feevyATElS~t  145 (288)
T KOG3987|consen  114 VTLLDLGAGDGEITLRMAPTFEEVYATELSWT  145 (288)
T ss_pred             eeEEeccCCCcchhhhhcchHHHHHHHHhhHH
Confidence            58999999999999887776667888888764

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=83.54  E-value=0.28  Score=41.23  Aligned_cols=46  Identities=24%  Similarity=0.172  Sum_probs=35.0

Q ss_pred             cccEEEecCCCCCchhhhhhc--CC-ceEEccCCccceeccccCCCchhhh
Q 032395           71 GANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIELLMTSLPPSHICS  118 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~--ga-~Vv~tD~~~~~~~l~n~~~N~~~n~  118 (141)
                      .-+|||-=||||+=||-.++-  +. +|++-|+++  ++.+.+++|+++|.
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~--~a~~~i~~N~~~N~   98 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISP--EAVELIKRNLELNG   98 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-H--HHHHHHHHHHHHCT
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCH--HHHHHHHHhHhhcc
Confidence            348999999999999988876  33 899999999  46777777777663

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=83.36  E-value=0.63  Score=39.67  Aligned_cols=51  Identities=14%  Similarity=0.068  Sum_probs=34.6

Q ss_pred             ccceeeeehhHHHHHHHHh-hhcccccccEEEecCC-CCCchhhhhh-cCCceEEccCCcc
Q 032395           46 EYGLFVWPCSVILAEYVWQ-QRYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNR  103 (141)
Q Consensus        46 ~~g~~~W~as~~la~~l~~-~~~~~~~~~vLELG~G-tGl~~l~~a~-~ga~Vv~tD~~~~  103 (141)
                      ++|..+|++       +.+ ....+.|++|+=+||| .|+.....++ +|++|+++|.++.
T Consensus       183 g~g~s~~~~-------i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         183 GCRESLIDG-------IKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             hhchhhHHH-------HHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            345555544       444 3345789999999999 5655544443 5889999998873

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=82.92  E-value=0.55  Score=42.45  Aligned_cols=34  Identities=18%  Similarity=0.077  Sum_probs=24.3

Q ss_pred             HHHHHHHhhhcc-cccccEEEecCCCCCchhhhhh
Q 032395           57 ILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAK   90 (141)
Q Consensus        57 ~la~~l~~~~~~-~~~~~vLELG~GtGl~~l~~a~   90 (141)
                      .||.-|...... -.+..++|-.||+|-+.|.+|.
T Consensus       176 tlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~  210 (702)
T PRK11783        176 NLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAM  210 (702)
T ss_pred             HHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHH
Confidence            466655554333 2467999999999999987765

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=82.83  E-value=0.56  Score=37.56  Aligned_cols=47  Identities=11%  Similarity=0.167  Sum_probs=31.2

Q ss_pred             cccEEEecCCCC--CchhhhhhcCCceEEccCCccceeccccCCCchhhhh
Q 032395           71 GANVVELGAGTS--LPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHICSR  119 (141)
Q Consensus        71 ~~~vLELG~GtG--l~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n~~  119 (141)
                      +-++||+|.|.-  .+-|.....|.+.+++|+++.  .+..++.|+..|..
T Consensus        79 ~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~--sl~sA~~ii~~N~~  127 (292)
T COG3129          79 NIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQ--SLSSAKAIISANPG  127 (292)
T ss_pred             ceEEEeeccCcccccccccceeecceeecCccCHH--HHHHHHHHHHcCcc
Confidence            346788887733  233345567889999999994  56666666665533

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=82.03  E-value=1.5  Score=35.15  Aligned_cols=34  Identities=26%  Similarity=0.272  Sum_probs=27.1

Q ss_pred             ccccEEEecCCCCCchhhhhhcC-------CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG-------SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g-------a~Vv~tD~~~~  103 (141)
                      ++..++|+|||.|.++-.++.+-       ..++++|-...
T Consensus        18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~   58 (259)
T PF05206_consen   18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN   58 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc
Confidence            56689999999999999887642       37888888663

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=81.37  E-value=0.7  Score=39.82  Aligned_cols=68  Identities=22%  Similarity=0.189  Sum_probs=48.6

Q ss_pred             ccceeeeehhHHHHHHHHhhhccc-ccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395           46 EYGLFVWPCSVILAEYVWQQRYRF-SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        46 ~~g~~~W~as~~la~~l~~~~~~~-~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ..|-.-|.+- ...+...-. ..| .|..|=|+=||.|-.++-+++.++.|++-|+++  +.++.++.|+.+|
T Consensus       226 DfskVYWnsR-L~~Eherls-g~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNp--esik~Lk~ni~lN  294 (495)
T KOG2078|consen  226 DFSKVYWNSR-LSHEHERLS-GLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNP--ESIKWLKANIKLN  294 (495)
T ss_pred             ecceEEeecc-chhHHHHHh-hccCCcchhhhhhcCcCccccchhhcCcEEEecCCCH--HHHHHHHHhcccc
Confidence            4566679843 222221111 134 467888999999999999999999999999999  5666666776666

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=80.96  E-value=1.2  Score=28.80  Aligned_cols=29  Identities=31%  Similarity=0.444  Sum_probs=21.5

Q ss_pred             EEEecCCCCCchhhhhhcC---CceEEccCCcc
Q 032395           74 VVELGAGTSLPGLVAAKVG---SNVTLTDDSNR  103 (141)
Q Consensus        74 vLELG~GtGl~~l~~a~~g---a~Vv~tD~~~~  103 (141)
                      ++|+|||+|... .++...   ..+++.|.++.
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~   83 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPE   83 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHH
Confidence            999999999876 333333   37888888874

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=80.04  E-value=1.2  Score=38.75  Aligned_cols=34  Identities=15%  Similarity=0.023  Sum_probs=28.0

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC--ceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~  103 (141)
                      .+..+||+|||.|-..+..|+...  .+++.|....
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~  382 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLN  382 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHH
Confidence            356899999999988887777654  8999999873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	141
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	2e-16

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281

 Score = 72.6 bits (177), Expect = 2e-16
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 2/97 (2%)

Query: 8   KDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEE-YGLFVWPCSVILAEYVWQQR 66
               +   +   +  + Y          S+ +    +   +   VW  +  LA+ +  Q 
Sbjct: 16  GTPPDFYRERQRSRVERYQSPAGAPLQCSVQVQTTQEHPLWTSHVWSGARALADTLCWQP 75

Query: 67  YRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSN 102
              +G  V ELGAG  L  +VA   G   V  TD  +
Sbjct: 76  ELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPD 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	141
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.33
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.23
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.5
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.44
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.38
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.32
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.32
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.3
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.3
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.29
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.29
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.29
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.29
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.26
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.25
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.23
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.21
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.2
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.2
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.2
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.19
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.19
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.17
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.16
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.14
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.14
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.14
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.12
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.12
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.12
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.1
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.1
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.1
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.1
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.1
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.09
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.09
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.09
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.09
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.08
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.07
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.04
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.04
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.03
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.02
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.02
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.02
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.01
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.01
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.0
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.0
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.0
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	97.99
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.99
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	97.98
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	97.98
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	97.97
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	97.97
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	97.97
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	97.96
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	97.95
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	97.95
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.94
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	97.94
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.94
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	97.94
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	97.94
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	97.94
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	97.93
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	97.93
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	97.93
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	97.93
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	97.93
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	97.93
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	97.92
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	97.92
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.92
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.91
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.91
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	97.9
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	97.89
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	97.89
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.88
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	97.88
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	97.88
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	97.87
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	97.87
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	97.87
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	97.86
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	97.86
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	97.86
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	97.85
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	97.85
2h00_A	254	Methyltransferase 10 domain containing protein; st	97.84
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	97.84
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.84
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	97.83
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	97.83
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	97.83
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	97.83
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	97.83
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	97.82
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	97.82
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	97.82
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.82
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.82
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	97.81
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.81
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.81
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	97.81
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.8
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	97.79
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.79
2p7i_A	250	Hypothetical protein; putative methyltransferase,	97.78
1xxl_A	239	YCGJ protein; structural genomics, protein structu	97.78
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.78
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	97.78
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	97.77
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	97.77
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.77
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	97.77
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.77
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	97.77
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.76
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.76
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	97.76
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	97.75
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	97.75
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	97.75
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.75
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	97.75
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.74
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.74
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	97.74
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.74
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	97.74
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.73
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	97.73
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	97.72
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	97.71
3lcc_A	235	Putative methyl chloride transferase; halide methy	97.71
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	97.71
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	97.71
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.7
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	97.7
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	97.69
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.69
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	97.68
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	97.68
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	97.68
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	97.68
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	97.68
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	97.67
3f4k_A	257	Putative methyltransferase; structural genomics, P	97.67
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.67
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	97.67
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.67
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.67
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	97.66
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	97.66
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	97.66
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	97.66
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.66
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	97.65
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	97.65
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	97.64
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.63
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	97.63
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.63
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	97.62
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.62
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	97.62
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	97.62
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	97.61
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	97.61
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	97.61
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	97.6
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	97.6
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.6
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	97.59
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.59
3i9f_A	170	Putative type 11 methyltransferase; structural gen	97.58
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	97.57
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.56
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	97.55
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	97.54
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	97.54
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	97.54
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.53
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	97.53
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	97.52
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	97.52
3cc8_A	230	Putative methyltransferase; structural genomics, j	97.51
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.49
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	97.48
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	97.48
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	97.47
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	97.47
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	97.47
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	97.46
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.45
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	97.44
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	97.4
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	97.4
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	97.34
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	97.34
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.34
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.3
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	97.29
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.28
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.27
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	97.25
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.23
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	97.23
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.2
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	97.19
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	97.15
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	97.15
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	97.13
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	97.13
3ocj_A	305	Putative exported protein; structural genomics, PS	97.09
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	97.08
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	97.07
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.05
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	97.04
2pt6_A	321	Spermidine synthase; transferase, structural genom	97.03
2qm3_A	373	Predicted methyltransferase; putative methyltransf	96.99
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	96.98
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	96.96
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	96.95
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.95
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	96.94
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	96.93
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	96.93
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	96.92
2o07_A	304	Spermidine synthase; structural genomics, structur	96.88
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	96.84
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	96.84
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	96.78
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	96.77
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	96.76
2i7c_A	283	Spermidine synthase; transferase, structural genom	96.76
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	96.64
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	96.63
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	96.49
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	96.46
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	96.45
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.44
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	96.44
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	96.39
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	96.32
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	96.32
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	96.29
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	96.26
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	96.21
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	96.18
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	96.09
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	96.06
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	96.04
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	96.01
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	95.99
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	95.96
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	95.95
3sso_A	419	Methyltransferase; macrolide, natural product, ros	95.88
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	95.88
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	95.87
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	95.83
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	95.75
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	95.71
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	95.52
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	95.36
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	95.15
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	95.13
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	94.87
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	94.82
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	94.79
3cvo_A	202	Methyltransferase-like protein of unknown functio;	94.58
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	94.0
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	93.74
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	93.66
3lkd_A	542	Type I restriction-modification system methyltrans	93.58
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	93.56
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	93.21
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	93.12
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	92.61
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	92.35
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	91.95
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	91.31
3khk_A	544	Type I restriction-modification system methylation	91.04
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	90.08
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	87.89
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	86.75
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	85.0
2oo3_A	283	Protein involved in catabolism of external DNA; st	84.79
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	84.49
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	82.04
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	80.94
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	80.56

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.33  E-value=2.9e-13  Score=106.34  Aligned_cols=99  Identities=23%  Similarity=0.280  Sum_probs=65.4

Q ss_pred             eehhhhhhcccccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccC-CccceeccccCC
Q 032395           35 FSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDD-SNRIELLMTSLP  112 (141)
Q Consensus        35 ~~i~i~~~~~~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~-~~~~~~l~n~~~  112 (141)
                      ..+++... ...+|..+|+++..|++++.......++++|||||||+|.+++.+++.|+ +|+++|+ ++  +.++.++.
T Consensus        45 ~~~~i~g~-~~~~g~~~~~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~--~~~~~a~~  121 (281)
T 3bzb_A           45 VQVQTTQE-HPLWTSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDP--EILNSLES  121 (281)
T ss_dssp             EEEECC------------CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCH--HHHHHHHH
T ss_pred             eEEEECCC-CCCCCceeecHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCH--HHHHHHHH
Confidence            44555433 46678899999999999999887677899999999999999999999988 9999999 77  35665566


Q ss_pred             Cchhhhh-hhcc----CCcceEEEEEEeE
Q 032395          113 PSHICSR-VLQD----QSSLRLIIIEVGI  136 (141)
Q Consensus       113 N~~~n~~-~~~~----~~~v~v~~l~WG~  136 (141)
                      |+..|.. ....    ...+++..++||.
T Consensus       122 n~~~N~~~~~~~~~~~~~~v~~~~~~~~~  150 (281)
T 3bzb_A          122 NIREHTANSCSSETVKRASPKVVPYRWGD  150 (281)
T ss_dssp             HHHTTCC----------CCCEEEECCTTS
T ss_pred             HHHHhhhhhcccccCCCCCeEEEEecCCC
Confidence            6544311 1111    1367777777864

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.23  E-value=8.2e-13  Score=108.83  Aligned_cols=106  Identities=20%  Similarity=0.193  Sum_probs=68.1

Q ss_pred             eeeecCCCCCCceehhhhhhccccc-ceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccC
Q 032395           23 QHYFVDESDKPSFSIAIIENMKEEY-GLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDD  100 (141)
Q Consensus        23 ~~~f~~~~~~~~~~i~i~~~~~~~~-g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~  100 (141)
                      .+||++..     .+.|++.|-... -...+      .+.|.++...|+|++|||+|||||++++++|+.|| +|+++|.
T Consensus        46 ~~Yf~sY~-----~~~iH~~ML~D~~Rt~aY------~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~  114 (376)
T 4hc4_A           46 QLYYECYS-----DVSVHEEMIADRVRTDAY------RLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEA  114 (376)
T ss_dssp             ---CCCHH-----HHHHHHHHHHCHHHHHHH------HHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEEC
T ss_pred             hhhhhhcc-----CcHHHHHHhCCHHHHHHH------HHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeC
Confidence            46777753     256676653322 11111      22366677789999999999999999999999998 8999999


Q ss_pred             Cccceecc-ccCCCchhh------hhhh--ccCCcceEEEEEE-eEEee
Q 032395          101 SNRIELLM-TSLPPSHIC------SRVL--QDQSSLRLIIIEV-GIILL  139 (141)
Q Consensus       101 ~~~~~~l~-n~~~N~~~n------~~~~--~~~~~v~v~~l~W-G~~ll  139 (141)
                      ++..+..+ +++.|...+      +.+.  ..+.+++++..+| |++|+
T Consensus       115 s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~l~  163 (376)
T 4hc4_A          115 SAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGLL  163 (376)
T ss_dssp             STTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTTBT
T ss_pred             hHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccccc
Confidence            87432222 233332111      1111  1257899999999 88876

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.50  E-value=2.6e-08  Score=76.84  Aligned_cols=77  Identities=17%  Similarity=0.206  Sum_probs=51.9

Q ss_pred             ceehhhhhhcccccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCC
Q 032395           34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        34 ~~~i~i~~~~~~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      .+.+.+.+.+...+|.  +++...+.+++...  ..++++|||+|||+|.+++.+++.|++|+++|+++.  .++.++.|
T Consensus        88 ~~~~~l~p~~~fgtg~--~~tt~~~~~~l~~~--~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~--~v~~a~~n  161 (254)
T 2nxc_A           88 EIPLVIEPGMAFGTGH--HETTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPM--VLPQAEAN  161 (254)
T ss_dssp             SEEEECCCC-----CC--SHHHHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGG--GHHHHHHH
T ss_pred             ceEEEECCCccccCCC--CHHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHH--HHHHHHHH
Confidence            3445555554444444  45666666666543  336789999999999999999999999999999994  55555555


Q ss_pred             chh
Q 032395          114 SHI  116 (141)
Q Consensus       114 ~~~  116 (141)
                      ...
T Consensus       162 ~~~  164 (254)
T 2nxc_A          162 AKR  164 (254)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.44  E-value=4e-08  Score=71.72  Aligned_cols=63  Identities=21%  Similarity=0.255  Sum_probs=43.5

Q ss_pred             eeehhHHHHHHHHhhhcc---cccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCch
Q 032395           51 VWPCSVILAEYVWQQRYR---FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        51 ~W~as~~la~~l~~~~~~---~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      .+|+...+.+.+......   .++++|||+|||+|..++.+++.++ +|+++|+++.  .++.++.|+.
T Consensus        22 ~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~--~~~~a~~~~~   88 (189)
T 3p9n_A           22 TRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQR--SAAVIARNIE   88 (189)
T ss_dssp             C---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHH--HHHHHHHHHH
T ss_pred             CccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHH--HHHHHHHHHH
Confidence            355665665555443222   5889999999999999997777777 8999999984  5555555543

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.38  E-value=1.2e-07  Score=77.35  Aligned_cols=81  Identities=20%  Similarity=0.292  Sum_probs=54.9

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceecc-ccCCCchhh------hhhhc--cCCcc
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLM-TSLPPSHIC------SRVLQ--DQSSL  127 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~-n~~~N~~~n------~~~~~--~~~~v  127 (141)
                      ..+++......+++++|||+|||+|.+++.+++.|+ +|+++|.++.++..+ +++.|...+      ..+..  ...++
T Consensus        51 ~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  130 (376)
T 3r0q_C           51 YFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKV  130 (376)
T ss_dssp             HHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCE
T ss_pred             HHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcc
Confidence            444566666677899999999999999999999998 999999995323222 222221111      11111  13679


Q ss_pred             eEEEEEE-eEEe
Q 032395          128 RLIIIEV-GIIL  138 (141)
Q Consensus       128 ~v~~l~W-G~~l  138 (141)
                      +++..+| ++++
T Consensus       131 D~Iv~~~~~~~l  142 (376)
T 3r0q_C          131 DVIISEWMGYFL  142 (376)
T ss_dssp             EEEEECCCBTTB
T ss_pred             eEEEEcChhhcc
Confidence            9999988 7765

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.32  E-value=1.4e-07  Score=76.16  Aligned_cols=79  Identities=23%  Similarity=0.274  Sum_probs=52.8

Q ss_pred             HHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceecc-ccCCCchhh------hhhh--cc-CCcce
Q 032395           60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLM-TSLPPSHIC------SRVL--QD-QSSLR  128 (141)
Q Consensus        60 ~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~-n~~~N~~~n------~~~~--~~-~~~v~  128 (141)
                      +.+......+++++|||+|||+|..++.+++.|+ +|+++|.++.++..+ +++.|...+      ..+.  +. ..+++
T Consensus        56 ~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  135 (349)
T 3q7e_A           56 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVD  135 (349)
T ss_dssp             HHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEE
T ss_pred             HHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceE
Confidence            3455555567899999999999999999999988 999999996322222 222221111      1111  11 36899


Q ss_pred             EEEEEE-eEEe
Q 032395          129 LIIIEV-GIIL  138 (141)
Q Consensus       129 v~~l~W-G~~l  138 (141)
                      ++..+| |+++
T Consensus       136 ~Iis~~~~~~l  146 (349)
T 3q7e_A          136 IIISEWMGYCL  146 (349)
T ss_dssp             EEEECCCBBTB
T ss_pred             EEEEccccccc
Confidence            999988 6665

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.32  E-value=1.7e-07  Score=75.42  Aligned_cols=79  Identities=24%  Similarity=0.349  Sum_probs=52.2

Q ss_pred             HHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceecc-ccCCC-----chhh-hhhh--cc-CCcce
Q 032395           60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLM-TSLPP-----SHIC-SRVL--QD-QSSLR  128 (141)
Q Consensus        60 ~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~-n~~~N-----~~~n-~~~~--~~-~~~v~  128 (141)
                      +++.......++++|||+|||+|.+++.+++.|+ +|+++|.++.++..+ +++.|     +..- ..+.  +. ..+++
T Consensus        54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D  133 (340)
T 2fyt_A           54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVD  133 (340)
T ss_dssp             HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEE
T ss_pred             HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEE
Confidence            4455555567889999999999999999999987 999999997322222 22211     1110 1111  11 25789


Q ss_pred             EEEEEE-eEEe
Q 032395          129 LIIIEV-GIIL  138 (141)
Q Consensus       129 v~~l~W-G~~l  138 (141)
                      ++..+| +++|
T Consensus       134 ~Ivs~~~~~~l  144 (340)
T 2fyt_A          134 VIISEWMGYFL  144 (340)
T ss_dssp             EEEECCCBTTB
T ss_pred             EEEEcCchhhc
Confidence            999888 7665

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.30  E-value=2.9e-07  Score=70.53  Aligned_cols=52  Identities=15%  Similarity=0.107  Sum_probs=43.1

Q ss_pred             eehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        52 W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      -.++..|.+.+.......++++|||+|||||..+..+++.|+ +|+++|+++.
T Consensus        19 srg~~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~   71 (232)
T 3opn_A           19 SRGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTN   71 (232)
T ss_dssp             STTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCC
T ss_pred             CCcHHHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHH
Confidence            356666777676655556789999999999999999999887 9999999995

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.30  E-value=1.2e-07  Score=68.24  Aligned_cols=51  Identities=22%  Similarity=0.296  Sum_probs=36.7

Q ss_pred             ehhHHHHHHHHhhhc-ccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           53 PCSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        53 ~as~~la~~l~~~~~-~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      |+...+.+.+..... ..++++|||+|||+|..++.+++.+. +|+++|+++.
T Consensus        13 p~~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~   65 (177)
T 2esr_A           13 PTSDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRK   65 (177)
T ss_dssp             -----CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHH
T ss_pred             cCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHH
Confidence            444445555544333 45788999999999999998888875 9999999984

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.29  E-value=2.1e-07  Score=74.41  Aligned_cols=80  Identities=25%  Similarity=0.294  Sum_probs=51.7

Q ss_pred             HHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceecc-ccCCCc-----hh-hhhhh--cc-CCcc
Q 032395           59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLM-TSLPPS-----HI-CSRVL--QD-QSSL  127 (141)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~-n~~~N~-----~~-n~~~~--~~-~~~v  127 (141)
                      .+.+.......++++|||+|||+|.+++.+++.|+ +|+++|.++.++..+ ++..|.     .. ++.+.  .. ..++
T Consensus        27 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  106 (328)
T 1g6q_1           27 RNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKV  106 (328)
T ss_dssp             HHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCE
T ss_pred             HHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcc
Confidence            33455545566889999999999999999999987 999999996323222 222111     10 01111  11 2578


Q ss_pred             eEEEEEE-eEEe
Q 032395          128 RLIIIEV-GIIL  138 (141)
Q Consensus       128 ~v~~l~W-G~~l  138 (141)
                      +++..+| +++|
T Consensus       107 D~Ivs~~~~~~l  118 (328)
T 1g6q_1          107 DIIISEWMGYFL  118 (328)
T ss_dssp             EEEEECCCBTTB
T ss_pred             cEEEEeCchhhc
Confidence            8888887 5554

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.29  E-value=1.4e-07  Score=66.89  Aligned_cols=61  Identities=20%  Similarity=0.215  Sum_probs=43.2

Q ss_pred             eehhHHHHHHHHhhhc-cc-ccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCc
Q 032395           52 WPCSVILAEYVWQQRY-RF-SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        52 W~as~~la~~l~~~~~-~~-~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      .++...+.+.+..... .+ ++++|||+|||+|..++.+++.+++|+++|+++.  .++.++.|.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~--~~~~a~~~~   83 (171)
T 1ws6_A           21 RPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPE--AVRLLKENV   83 (171)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHH--HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHH--HHHHHHHHH
Confidence            3444445554444322 24 7889999999999999999999889999999984  444444433

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.29  E-value=1.4e-07  Score=67.96  Aligned_cols=60  Identities=15%  Similarity=0.139  Sum_probs=43.7

Q ss_pred             ehhHHHHHHHHhhh-cccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCc
Q 032395           53 PCSVILAEYVWQQR-YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        53 ~as~~la~~l~~~~-~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      |+...+.+.+.... ...++++|||+|||+|..++.+++.++ +|+++|+++.  .++.++.|.
T Consensus        26 p~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~--~~~~a~~~~   87 (187)
T 2fhp_A           26 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFA--ALKVIKENI   87 (187)
T ss_dssp             CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHH--HHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHH--HHHHHHHHH
Confidence            45555666655543 235788999999999999998888775 9999999984  455444444

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.29  E-value=3.6e-07  Score=66.74  Aligned_cols=58  Identities=24%  Similarity=0.214  Sum_probs=35.2

Q ss_pred             HHHHHHHHhhhcc-cccccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCCch
Q 032395           56 VILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        56 ~~la~~l~~~~~~-~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      ..+.+++...... .++++|||+|||+|..++.+++.+  ++|+++|+++.  .++.++.|..
T Consensus        15 ~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~--~~~~a~~~~~   75 (215)
T 4dzr_A           15 EVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMD--ALAVARRNAE   75 (215)
T ss_dssp             HHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------
T ss_pred             HHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHH--HHHHHHHHHH
Confidence            3444555443222 477899999999999999999884  49999999984  5555555543

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.26  E-value=9.8e-08  Score=69.08  Aligned_cols=42  Identities=17%  Similarity=0.078  Sum_probs=34.9

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCC
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      ++.+|||+|||+|..++.+++.+.+|+++|+++.  .++.++.|
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~--~l~~a~~~   63 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQ--ALGKTSQR   63 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHH--HHHHHHHH
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHH--HHHHHHHH
Confidence            6789999999999999999998889999999984  44443333

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.25  E-value=1.4e-07  Score=74.69  Aligned_cols=46  Identities=20%  Similarity=0.146  Sum_probs=40.2

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      +|++|||+|||+|..++.+|+.|+ +|++.|+++  .+++.++.|+.+|
T Consensus       125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np--~a~~~~~~N~~~N  171 (278)
T 3k6r_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDP--YTFKFLVENIHLN  171 (278)
T ss_dssp             TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCH--HHHHHHHHHHHHT
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCH--HHHHHHHHHHHHc
Confidence            588999999999999999999986 999999999  4667667777666

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.23  E-value=1.8e-07  Score=69.41  Aligned_cols=44  Identities=14%  Similarity=0.056  Sum_probs=34.8

Q ss_pred             cccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      +++++|||+|||+|..++.++..++ +|+++|+++.  .++.++.|+
T Consensus        52 ~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~--~l~~a~~~~   96 (201)
T 2ift_A           52 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKT--VANQLKKNL   96 (201)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHH--HHHHHHHHH
T ss_pred             cCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHH--HHHHHHHHH
Confidence            4788999999999999998777776 9999999984  444444443

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.21  E-value=3.1e-07  Score=67.50  Aligned_cols=61  Identities=18%  Similarity=0.140  Sum_probs=43.4

Q ss_pred             eehhHHHHHHHHhhh---cccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCc
Q 032395           52 WPCSVILAEYVWQQR---YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        52 W~as~~la~~l~~~~---~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      |++...++..+....   ...++++|||+|||+|..++.+++.++ +|+++|+++.  .++.++.|.
T Consensus        28 ~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~--~~~~a~~~~   92 (207)
T 1wy7_A           28 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKE--AVDVLIENL   92 (207)
T ss_dssp             CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHH--HHHHHHHHT
T ss_pred             ecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHH--HHHHHHHHH
Confidence            445555555554332   244688999999999999999998877 7999999984  444444443

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.20  E-value=1.6e-07  Score=72.25  Aligned_cols=46  Identities=9%  Similarity=0.139  Sum_probs=38.5

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC--ceEEccCCccceeccccCCCchhh
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ++.+|+|+|||+|.+++.+++.+.  +|+++|+++  ..++.++.|+..|
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~--~al~~A~~N~~~~   62 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVE--GPYQSAVKNVEAH   62 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSH--HHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHc
Confidence            577999999999999999999874  899999999  4666666666555

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.20  E-value=1.3e-07  Score=82.59  Aligned_cols=76  Identities=12%  Similarity=0.038  Sum_probs=50.9

Q ss_pred             hhhcccccccEEEecCCCCCchhhhhhcC---C---ceEEccCCccc-eeccccCCCchhh------hhhh--ccCCcce
Q 032395           64 QQRYRFSGANVVELGAGTSLPGLVAAKVG---S---NVTLTDDSNRI-ELLMTSLPPSHIC------SRVL--QDQSSLR  128 (141)
Q Consensus        64 ~~~~~~~~~~vLELG~GtGl~~l~~a~~g---a---~Vv~tD~~~~~-~~l~n~~~N~~~n------~~~~--~~~~~v~  128 (141)
                      ++...+++++|+++|||+|++..++++++   +   +|++.+.++.. .+++..+.|.-.+      +++.  ..+.+++
T Consensus       351 ~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVD  430 (637)
T 4gqb_A          351 EEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKAD  430 (637)
T ss_dssp             GGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEE
T ss_pred             hccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceeccCCcccC
Confidence            34445677899999999999966555443   2   68999999853 2333333332111      2222  2268999


Q ss_pred             EEEEEE-eEEee
Q 032395          129 LIIIEV-GIILL  139 (141)
Q Consensus       129 v~~l~W-G~~ll  139 (141)
                      |++.+| |+||+
T Consensus       431 IIVSEwMG~fLl  442 (637)
T 4gqb_A          431 IIVSELLGSFAD  442 (637)
T ss_dssp             EEECCCCBTTBG
T ss_pred             EEEEEcCccccc
Confidence            999999 99987

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.20  E-value=2.6e-07  Score=68.63  Aligned_cols=60  Identities=17%  Similarity=0.107  Sum_probs=40.3

Q ss_pred             ehhHHHHHHHHhhhc-ccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCc
Q 032395           53 PCSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        53 ~as~~la~~l~~~~~-~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      |+...+.+.+..... .+++++|||+|||+|..++.+++.++ +|+++|+++.  .++.++.|+
T Consensus        36 p~~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~--~l~~a~~~~   97 (202)
T 2fpo_A           36 PTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRA--VSQQLIKNL   97 (202)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHH--HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHH--HHHHHHHHH
Confidence            344444444433222 24788999999999999998777776 9999999984  444444443

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.19  E-value=3.1e-07  Score=65.40  Aligned_cols=58  Identities=14%  Similarity=-0.009  Sum_probs=43.0

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCC
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      ....+..++.......++.+|||+|||+|..++.+++.+.+|+++|.++.  .++.++.|
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~--~~~~a~~~   76 (183)
T 2yxd_A           19 TKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDG--AIEVTKQN   76 (183)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHH--HHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHH--HHHHHHHH
Confidence            44455556655545557889999999999999999886669999999984  44444443

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.19  E-value=3.4e-07  Score=68.29  Aligned_cols=50  Identities=8%  Similarity=0.041  Sum_probs=37.9

Q ss_pred             HHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCC
Q 032395           62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        62 l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      +.......++.+|||+|||+|..++.+++.+++|+++|+++.  .++.++.|
T Consensus        47 ~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~--~~~~a~~~   96 (204)
T 3njr_A           47 TLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRAD--RIENIQKN   96 (204)
T ss_dssp             HHHHHCCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHH--HHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHH--HHHHHHHH
Confidence            333333446789999999999999999988889999999984  44443333

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.17  E-value=2.8e-07  Score=72.28  Aligned_cols=43  Identities=28%  Similarity=0.189  Sum_probs=35.7

Q ss_pred             HHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        61 ~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .+......-++.+|||+|||+|..++.+++.+++|+++|.++.
T Consensus        36 ~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~   78 (261)
T 3iv6_A           36 NDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQR   78 (261)
T ss_dssp             HHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHH
T ss_pred             HHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHH
Confidence            3333333446889999999999999999999999999999995

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.16  E-value=2.4e-07  Score=72.21  Aligned_cols=46  Identities=7%  Similarity=0.060  Sum_probs=38.6

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC--ceEEccCCccceeccccCCCchhh
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ++.+|||+|||+|.+++.+++.+.  +|+++|+++  ..++.++.|+..|
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~--~al~~A~~N~~~~   68 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVD--GPFQSAQKQVRSS   68 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSH--HHHHHHHHHHHHT
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHc
Confidence            578999999999999999999874  899999999  4666666666555

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.14  E-value=1.9e-06  Score=65.78  Aligned_cols=53  Identities=21%  Similarity=0.138  Sum_probs=40.4

Q ss_pred             HHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCc
Q 032395           60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        60 ~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      +.+......-++.+|||+|||+|..+..+++.+++|+++|+++.  .++.++.|.
T Consensus        19 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~--~~~~a~~~~   71 (245)
T 1yub_A           19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSH--LFNLSSEKL   71 (245)
T ss_dssp             HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCS--SSSSSSCTT
T ss_pred             HHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHH--HHHHHHHHh
Confidence            33444333346789999999999999999998899999999984  555555554

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.14  E-value=3.8e-07  Score=70.03  Aligned_cols=63  Identities=13%  Similarity=0.158  Sum_probs=44.9

Q ss_pred             ceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCch
Q 032395           48 GLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        48 g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      +++....+..|+.|+..   .+++++|||+|||+|..++.+++.+. +|+++|+++.  .++.++.|+.
T Consensus        30 ~~~~~~d~~ll~~~~~~---~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~--~~~~a~~n~~   93 (259)
T 3lpm_A           30 VFSFSIDAVLLAKFSYL---PIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQER--LADMAKRSVA   93 (259)
T ss_dssp             TBCCCHHHHHHHHHCCC---CSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHH--HHHHHHHHHH
T ss_pred             CccCcHHHHHHHHHhcC---CCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHH--HHHHHHHHHH
Confidence            33433446677776521   12578999999999999999998877 9999999984  4444444443

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.14  E-value=2.8e-07  Score=71.22  Aligned_cols=46  Identities=13%  Similarity=0.169  Sum_probs=38.8

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC--ceEEccCCccceeccccCCCchhh
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ++.+|+|+|||+|.+++.+++.+.  +|+++|+++  ..++.++.|+..|
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~--~al~~A~~N~~~~   68 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVN--GPYQSALKNVSEH   68 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSH--HHHHHHHHHHHHT
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCH--HHHHHHHHHHHHc
Confidence            578999999999999999999874  899999999  4666666666655

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.12  E-value=4.2e-07  Score=68.41  Aligned_cols=44  Identities=18%  Similarity=0.063  Sum_probs=36.6

Q ss_pred             cccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      .++.+|||+|||+|..++.+++.+.+|+++|+++.  .++.++.|+
T Consensus        77 ~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~--~~~~a~~~~  120 (241)
T 3gdh_A           77 FKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPV--KIALARNNA  120 (241)
T ss_dssp             SCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHH--HHHHHHHHH
T ss_pred             cCCCEEEECccccCHHHHHHHHcCCEEEEEECCHH--HHHHHHHHH
Confidence            37899999999999999999999999999999984  454444443

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.12  E-value=2.1e-06  Score=66.40  Aligned_cols=47  Identities=19%  Similarity=-0.006  Sum_probs=38.3

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .+.+|+......-++.+|||+|||+|..+..+++.|++|+++|+++.
T Consensus        55 ~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~  101 (252)
T 2gb4_A           55 LLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEI  101 (252)
T ss_dssp             HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHH
T ss_pred             HHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHH
Confidence            46666654322236789999999999999999999999999999995

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.12  E-value=5.8e-07  Score=64.36  Aligned_cols=48  Identities=17%  Similarity=0.021  Sum_probs=38.6

Q ss_pred             HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ..+..++.......++++|||+|||+|..++.+++.+.+|+++|.++.
T Consensus        19 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~   66 (192)
T 1l3i_A           19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPE   66 (192)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHH
Confidence            344555555445557889999999999999999888899999999984

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.10  E-value=8.7e-07  Score=72.66  Aligned_cols=63  Identities=24%  Similarity=0.285  Sum_probs=47.6

Q ss_pred             eehhHHHHHHHHhhh--cccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchh
Q 032395           52 WPCSVILAEYVWQQR--YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        52 W~as~~la~~l~~~~--~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      .+++..+.+.+....  ...++++|||+|||+|..++.+++.+++|+++|+++.  .++.++.|+..
T Consensus       213 d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~--al~~A~~n~~~  277 (381)
T 3dmg_A          213 DPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLA--SVLSLQKGLEA  277 (381)
T ss_dssp             CHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHH--HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHH
Confidence            356666666665532  2347889999999999999999999999999999984  55555555443

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.10  E-value=6.2e-07  Score=66.02  Aligned_cols=48  Identities=13%  Similarity=0.135  Sum_probs=38.1

Q ss_pred             HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ..+...+......-++.+|||+|||+|..++.+++.+.+|+++|+++.
T Consensus        63 ~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~  110 (210)
T 3lbf_A           63 PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKG  110 (210)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHH
Confidence            344444444434457889999999999999999999889999999984

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.10  E-value=2.2e-06  Score=66.61  Aligned_cols=51  Identities=16%  Similarity=0.197  Sum_probs=39.5

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCC
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLP  112 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~  112 (141)
                      +.+++.....  .+.+|||+|||+|..+..++..+++|+++|.++.  .++.++.
T Consensus        29 l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~--ml~~a~~   79 (257)
T 4hg2_A           29 LFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEA--QIRQALR   79 (257)
T ss_dssp             HHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHH--HHHTCCC
T ss_pred             HHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHH--hhhhhhh
Confidence            4566655432  4568999999999999999999999999999984  4554443

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.10  E-value=2.5e-06  Score=63.15  Aligned_cols=50  Identities=16%  Similarity=0.101  Sum_probs=39.2

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      +++-|.+...+....-++.+|||||||+|..+..+++.+++|+++|+++.
T Consensus         9 a~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~   58 (191)
T 3dou_A            9 AAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEM   58 (191)
T ss_dssp             HHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCC
T ss_pred             HHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEecccc
Confidence            45555555554433336789999999999999999988789999999984

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.10  E-value=6e-07  Score=66.00  Aligned_cols=73  Identities=16%  Similarity=0.163  Sum_probs=48.1

Q ss_pred             eehhhhhhcccccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCC
Q 032395           35 FSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        35 ~~i~i~~~~~~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      +.+.+.+......|  .++....+.+++....  -++++|||+|||+|..++.+++.+. +|+++|+++.  .++.++.|
T Consensus        29 ~~~~~~~~~~f~~~--~~~~~~~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~--~~~~a~~~  102 (205)
T 3grz_A           29 EIIRLDPGLAFGTG--NHQTTQLAMLGIERAM--VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDE--SMTAAEEN  102 (205)
T ss_dssp             EEEEESCC-----C--CHHHHHHHHHHHHHHC--SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHH--HHHHHHHH
T ss_pred             eeEEecCCcccCCC--CCccHHHHHHHHHHhc--cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHH--HHHHHHHH
Confidence            33444444333333  3466666666666532  2678999999999999999998877 9999999984  44444443

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.09  E-value=2.5e-06  Score=67.90  Aligned_cols=54  Identities=17%  Similarity=0.039  Sum_probs=44.6

Q ss_pred             eeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccc
Q 032395           51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRI  104 (141)
Q Consensus        51 ~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~  104 (141)
                      +-.+++.|.+.+.......++++|||+|||||..+..+++.|+ +|+++|.++.|
T Consensus        66 vsrg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~m  120 (291)
T 3hp7_A           66 VSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQ  120 (291)
T ss_dssp             SSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSC
T ss_pred             ccchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHH
Confidence            3456677777777665566889999999999999999988887 99999999853

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.09  E-value=6.6e-07  Score=66.79  Aligned_cols=44  Identities=25%  Similarity=0.369  Sum_probs=36.0

Q ss_pred             ccccEEEecCC-CCCchhhhhhc-CCceEEccCCccceeccccCCCch
Q 032395           70 SGANVVELGAG-TSLPGLVAAKV-GSNVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        70 ~~~~vLELG~G-tGl~~l~~a~~-ga~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      ++++|||+||| +|..++.+++. +++|+++|+++.  .++.++.|+.
T Consensus        55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~--~~~~a~~~~~  100 (230)
T 3evz_A           55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEE--FFEYARRNIE  100 (230)
T ss_dssp             SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHH--HHHHHHHHHH
T ss_pred             CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHH--HHHHHHHHHH
Confidence            67899999999 99999999988 779999999984  4554444443

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.09  E-value=4.1e-07  Score=70.04  Aligned_cols=36  Identities=25%  Similarity=0.512  Sum_probs=32.1

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      ..++++|||+|||+|+..+.++..++ +|+++|+++.
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~   89 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDR   89 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHH
T ss_pred             CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHH
Confidence            35788999999999999998888887 7999999995

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.09  E-value=2.1e-06  Score=65.72  Aligned_cols=54  Identities=17%  Similarity=0.125  Sum_probs=41.5

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCC
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLP  112 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~  112 (141)
                      .+++++.......++++|||+|||+|..++.+++.+++|+++|+++.  .++.++.
T Consensus        21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~--~~~~a~~   74 (261)
T 3ege_A           21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIV--MRQQAVV   74 (261)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHH--HHHSSCC
T ss_pred             HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHH--HHHHHHh
Confidence            45555655444457889999999999999999998889999999984  4444333

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.08  E-value=5.3e-07  Score=70.37  Aligned_cols=46  Identities=20%  Similarity=0.152  Sum_probs=37.7

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ++++|||+|||+|..++.+++.++ +|+++|+++.  .++.++.|+..|
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~--~~~~a~~n~~~n  171 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPY--TFKFLVENIHLN  171 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHH--HHHHHHHHHHHT
T ss_pred             CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHH--HHHHHHHHHHHc
Confidence            488999999999999999999988 6999999984  555555555444

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.07  E-value=7.5e-07  Score=65.51  Aligned_cols=46  Identities=11%  Similarity=0.052  Sum_probs=36.4

Q ss_pred             cccccccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCCc
Q 032395           67 YRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      ..-++.+|||+|||+|..++.+++.+  .+|+++|.++.  .++.++.|+
T Consensus        37 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~--~~~~a~~~~   84 (204)
T 3e05_A           37 RLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQ--YLGFIRDNL   84 (204)
T ss_dssp             TCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHH--HHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHH--HHHHHHHHH
Confidence            33467899999999999999999887  59999999984  454444443

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.04  E-value=9.5e-07  Score=69.40  Aligned_cols=59  Identities=20%  Similarity=0.215  Sum_probs=42.2

Q ss_pred             HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-CCceEEccCCccceeccccCCCchh
Q 032395           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      ..+.+++......-++.+|||+|||+|..++.+++. +++|+++|+++  +.++.++.|+..
T Consensus       109 e~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~--~al~~A~~n~~~  168 (284)
T 1nv8_A          109 EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSS--KAVEIARKNAER  168 (284)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHH
Confidence            345555544322225679999999999999999888 66999999998  355555555443

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.04  E-value=9.4e-07  Score=66.08  Aligned_cols=55  Identities=15%  Similarity=0.094  Sum_probs=39.6

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCccceeccccCCCc
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      .+.++.......++++|||+|||+|..++.+++.   +++|+++|+++.  .++.++.|+
T Consensus        46 ~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~--~~~~a~~~~  103 (221)
T 3u81_A           46 KGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPD--CAAITQQML  103 (221)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChH--HHHHHHHHH
Confidence            3444444333447789999999999999988874   569999999984  444444443

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.03  E-value=7.6e-07  Score=65.72  Aligned_cols=52  Identities=13%  Similarity=-0.089  Sum_probs=39.8

Q ss_pred             eehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        52 W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      |-....+..++.......++++|||+|||+|..+..+++.+++|+++|+++.
T Consensus        33 ~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~   84 (216)
T 3ofk_A           33 PFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPR   84 (216)
T ss_dssp             HHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHH
T ss_pred             HhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHH
Confidence            3333345555554444446789999999999999999999889999999984

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.02  E-value=5.1e-06  Score=60.38  Aligned_cols=45  Identities=33%  Similarity=0.327  Sum_probs=37.5

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCC-chhhhhh-cCCceEEccCCcc
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSL-PGLVAAK-VGSNVTLTDDSNR  103 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl-~~l~~a~-~ga~Vv~tD~~~~  103 (141)
                      .|++|+.++..  .+.+|||+|||.|. ++..++. .|.+|++||+++.
T Consensus        24 ~LaeYI~~~~~--~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~   70 (153)
T 2k4m_A           24 DLAVYIIRCSG--PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPS   70 (153)
T ss_dssp             HHHHHHHHHSC--SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCS
T ss_pred             HHHHHHHhcCC--CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCcc
Confidence            48888876532  45799999999996 9999987 8999999999983

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.02  E-value=9.1e-07  Score=64.88  Aligned_cols=36  Identities=22%  Similarity=0.348  Sum_probs=31.9

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      ..++++|||+|||+|..++.+++.++ +|+++|+++.
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~   85 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPD   85 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHH
Confidence            34778999999999999999988877 7999999984

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.02  E-value=9.6e-07  Score=68.17  Aligned_cols=46  Identities=17%  Similarity=0.304  Sum_probs=37.2

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      +.+++.......++++|||+|||+|..++.++..+++|+++|+++.
T Consensus        45 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~   90 (293)
T 3thr_A           45 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDK   90 (293)
T ss_dssp             HHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHH
T ss_pred             HHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHH
Confidence            3345544433446789999999999999999999999999999984

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.01  E-value=1.5e-06  Score=67.65  Aligned_cols=46  Identities=13%  Similarity=0.084  Sum_probs=37.3

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      +++.+......-++.+|||+|||+|.++..+++.+++|+++|+++.
T Consensus        17 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~   62 (255)
T 3tqs_A           17 VLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRD   62 (255)
T ss_dssp             HHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHH
T ss_pred             HHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHH
Confidence            3444444444446789999999999999999999899999999995

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.01  E-value=3.2e-06  Score=61.02  Aligned_cols=47  Identities=21%  Similarity=0.140  Sum_probs=37.2

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .+..|.+++...  ..++++|||+|||+|..++.+++.+ +|+++|+++.
T Consensus         9 ~~~~l~~~l~~~--~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~   55 (170)
T 3q87_B            9 DTYTLMDALERE--GLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIR   55 (170)
T ss_dssp             HHHHHHHHHHHH--TCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHH
T ss_pred             cHHHHHHHHHhh--cCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHH
Confidence            344555554331  2477899999999999999999999 9999999995

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.00  E-value=1.4e-06  Score=62.47  Aligned_cols=34  Identities=24%  Similarity=0.440  Sum_probs=31.2

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..++.+++.+.+|+++|+++.
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~   85 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADEVKSTTMADINRR   85 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHH
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHH
Confidence            7789999999999999988888779999999984

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.00  E-value=1.3e-06  Score=62.15  Aligned_cols=42  Identities=7%  Similarity=0.026  Sum_probs=33.3

Q ss_pred             HHhhhcccccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395           62 VWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR  103 (141)
Q Consensus        62 l~~~~~~~~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~  103 (141)
                      +......-++.+|||+|||+|..++.+++.  +++|+++|+++.
T Consensus        17 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~   60 (178)
T 3hm2_A           17 AISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEE   60 (178)
T ss_dssp             HHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHH
T ss_pred             HHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHH
Confidence            333333446789999999999999988876  459999999984

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.00  E-value=1.6e-06  Score=64.39  Aligned_cols=46  Identities=22%  Similarity=0.061  Sum_probs=36.7

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .|.+|+... ..-++.+|||+|||+|..+..+++.|++|+++|+++.
T Consensus        10 ~l~~~~~~l-~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~   55 (203)
T 1pjz_A           10 DLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEA   55 (203)
T ss_dssp             HHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHH
T ss_pred             HHHHHHHhc-ccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHH
Confidence            345555432 1226789999999999999999999999999999995

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=97.99  E-value=1.3e-06  Score=65.90  Aligned_cols=53  Identities=9%  Similarity=0.089  Sum_probs=42.3

Q ss_pred             eeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        51 ~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      .++.+..+++.+......-++.+|||+|||+|..++.+++. +++|+++|+++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~   89 (266)
T 3ujc_A           36 ISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSN   89 (266)
T ss_dssp             CSTTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHH
T ss_pred             cccchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHH
Confidence            45666666666666544446789999999999999988886 789999999984

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.99  E-value=8.5e-07  Score=71.37  Aligned_cols=46  Identities=26%  Similarity=0.240  Sum_probs=37.6

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ++++|||+|||+|..++.+++.|++|+++|+++.  .++.++.|+..|
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~--al~~a~~n~~~~  198 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKK--AIGWAKENQVLA  198 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHH--HHHHHHHHHHHH
T ss_pred             CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHH--HHHHHHHHHHHc
Confidence            5679999999999999999999999999999984  555555555443

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=97.98  E-value=2.1e-06  Score=63.59  Aligned_cols=50  Identities=18%  Similarity=0.035  Sum_probs=38.0

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      -.....+++.......++++|||+|||+|..+..+++.+  ++|+++|+++.
T Consensus        13 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~   64 (219)
T 3jwg_A           13 LNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYS   64 (219)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHH
T ss_pred             chHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHH
Confidence            333444455444344578899999999999999998876  49999999984

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=97.98  E-value=1.2e-06  Score=68.51  Aligned_cols=45  Identities=24%  Similarity=0.253  Sum_probs=35.7

Q ss_pred             cccccccEEEecCCCCCchhhhhhc--CCceEEccCCccceeccccCCC
Q 032395           67 YRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      ..+++++|||+|||+|..++.+++.  +++|+++|+++.  +++.++.|
T Consensus        43 ~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~--~i~~A~~~   89 (292)
T 3g07_A           43 EWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSR--LIHSARQN   89 (292)
T ss_dssp             GGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHH--HHHHHHHT
T ss_pred             hhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHH--HHHHHHHH
Confidence            3568899999999999999988886  459999999984  44444333

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.97  E-value=1.5e-06  Score=64.65  Aligned_cols=48  Identities=10%  Similarity=0.101  Sum_probs=36.7

Q ss_pred             HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCcc
Q 032395           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNR  103 (141)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~  103 (141)
                      ...+.++.......++++|||+|||+|..++.+++.   +.+|+++|.++.
T Consensus        50 ~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~  100 (225)
T 3tr6_A           50 PEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEK  100 (225)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHH
T ss_pred             HHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHH
Confidence            334444444334457889999999999999988886   569999999984

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=97.97  E-value=1e-06  Score=72.06  Aligned_cols=47  Identities=23%  Similarity=0.097  Sum_probs=38.5

Q ss_pred             cccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      .++++|||+|||+|..++.+|+.|+ +|+++|+++  +.++.++.|+..|
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~--~al~~A~~N~~~n  258 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAK--RSRALSLAHFEAN  258 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCT--THHHHHHHHHHHT
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHc
Confidence            4788999999999999999999887 899999999  4555555555444

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=97.97  E-value=9.9e-07  Score=72.69  Aligned_cols=46  Identities=20%  Similarity=0.070  Sum_probs=39.3

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      +|++|||+|||||..++.+++.|++|+++|+++  ..++.++.|+..|
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~--~al~~a~~n~~~n  259 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDL--EALGVLDQAALRL  259 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHH
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCeEEEEECCH--HHHHHHHHHHHHh
Confidence            389999999999999999999999999999999  4666666666555

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=97.96  E-value=1.6e-06  Score=64.53  Aligned_cols=49  Identities=16%  Similarity=0.180  Sum_probs=37.8

Q ss_pred             hHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCcc
Q 032395           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNR  103 (141)
Q Consensus        55 s~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~  103 (141)
                      +...+.++.......++++|||+|||+|..++.+++.   +++|+++|+++.
T Consensus        43 ~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~   94 (223)
T 3duw_A           43 SPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEK   94 (223)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHH
T ss_pred             CHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHH
Confidence            4444555544434457899999999999999988886   679999999984

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=97.95  E-value=1.7e-06  Score=65.33  Aligned_cols=46  Identities=20%  Similarity=0.060  Sum_probs=35.7

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      ..+.+......-++.+|||+|||+|..++.+++. +++|+++|+++.
T Consensus        24 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~   70 (256)
T 1nkv_A           24 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSL   70 (256)
T ss_dssp             HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHH
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHH
Confidence            3444444434447789999999999999988775 679999999984

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=97.95  E-value=5.4e-06  Score=60.42  Aligned_cols=50  Identities=10%  Similarity=-0.024  Sum_probs=36.1

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-C---CceEEccCCcc
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G---SNVTLTDDSNR  103 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-g---a~Vv~tD~~~~  103 (141)
                      ++..|.+........-++.+|||+|||+|..++.+++. +   ++|+++|+++.
T Consensus         6 ~~~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~   59 (201)
T 2plw_A            6 AAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM   59 (201)
T ss_dssp             THHHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC
T ss_pred             HHHHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc
Confidence            34445554443322235789999999999999988875 3   59999999984

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.94  E-value=1.6e-06  Score=70.80  Aligned_cols=55  Identities=20%  Similarity=0.251  Sum_probs=40.6

Q ss_pred             HHHhhhcccccccEEEecCCCCCchhhhhhc--CCceEEccCCccceeccccCCCchhh
Q 032395           61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        61 ~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ++........+.+|||+|||+|..++.+++.  +++|+++|.++.  .++.++.|+..|
T Consensus       213 ~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~--al~~Ar~n~~~n  269 (375)
T 4dcm_A          213 FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPM--AVASSRLNVETN  269 (375)
T ss_dssp             HHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHH--HHHHHHHHHHHH
T ss_pred             HHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHH--HHHHHHHHHHHc
Confidence            3444333335689999999999999999988  459999999984  565555655544

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=97.94  E-value=2.8e-06  Score=70.43  Aligned_cols=60  Identities=12%  Similarity=0.016  Sum_probs=43.4

Q ss_pred             hHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchh
Q 032395           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        55 s~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      +..+.+.+.......++.+|||+|||+|..++.+++.+++|+++|.++.  .++.++.|+..
T Consensus       271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~--al~~A~~n~~~  330 (433)
T 1uwv_A          271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPA--LVEKGQQNARL  330 (433)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHH--HHHHHHHHHHH
Confidence            3344444444333336789999999999999999998889999999983  55555555443

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.94  E-value=1.5e-06  Score=66.13  Aligned_cols=41  Identities=12%  Similarity=0.215  Sum_probs=33.2

Q ss_pred             ccccEEEecCCCCCchhhhhhcC-CceEEccCCccceeccccCC
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIELLMTSLP  112 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g-a~Vv~tD~~~~~~~l~n~~~  112 (141)
                      +|.+|||+|||+|..+..+++.. ++|+++|+++.  .++.+++
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~--~~~~a~~  101 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDG--VFQRLRD  101 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHH--HHHHHHH
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHH--HHHHHHH
Confidence            78899999999999999888764 59999999984  4444433

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=97.94  E-value=1.5e-06  Score=65.80  Aligned_cols=34  Identities=26%  Similarity=0.454  Sum_probs=29.7

Q ss_pred             ccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..++.+++.  +.+|+++|.++.
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~  105 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNK  105 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHH
Confidence            5789999999999999988853  559999999984

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=97.94  E-value=1.9e-06  Score=65.13  Aligned_cols=36  Identities=17%  Similarity=0.410  Sum_probs=32.6

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      ..++++|||+|||+|..++.+++.++ +|+++|+++.
T Consensus        54 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~   90 (265)
T 2i62_A           54 AVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQ   90 (265)
T ss_dssp             SCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHH
T ss_pred             ccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHH
Confidence            35788999999999999999999888 9999999984

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=97.94  E-value=1.8e-06  Score=66.52  Aligned_cols=43  Identities=23%  Similarity=0.358  Sum_probs=33.9

Q ss_pred             ccccEEEecCCCCCchhhhhhc--CCceEEccCCccceeccccCCCc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      ++.+|||+|||+|.+++.++..  +++|+++|.++.  .++.++.|+
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~--~~~~a~~~~  124 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRK--KVAFVERAI  124 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHH--HHHHHHHHH
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHH
Confidence            5789999999999999998876  459999999984  444444443

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=97.93  E-value=3.1e-06  Score=64.77  Aligned_cols=58  Identities=17%  Similarity=0.084  Sum_probs=41.4

Q ss_pred             hHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCccceeccccCCCc
Q 032395           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        55 s~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      +...+.++.......++++|||+|||+|..++.+++.   +++|+++|+++.  .++.++.|+
T Consensus        45 ~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~--~~~~a~~~~  105 (242)
T 3r3h_A           45 APEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEG--WTKHAHPYW  105 (242)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCS--SCCCSHHHH
T ss_pred             CHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHH
Confidence            3344445544434457789999999999999988874   459999999984  455554444

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=97.93  E-value=2.3e-06  Score=63.34  Aligned_cols=44  Identities=23%  Similarity=0.147  Sum_probs=34.7

Q ss_pred             HHHHhhhcccccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        60 ~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      +++.......++++|||+|||+|..+..+++.+  ++|+++|+++.
T Consensus        19 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~   64 (217)
T 3jwh_A           19 NGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYR   64 (217)
T ss_dssp             HHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHH
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHH
Confidence            344443334477899999999999999998875  49999999984

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=97.93  E-value=2.4e-06  Score=62.56  Aligned_cols=34  Identities=29%  Similarity=0.613  Sum_probs=30.2

Q ss_pred             ccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..++.+++.  +.+|+++|.++.
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~  100 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGK  100 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHH
Confidence            5889999999999999988876  459999999984

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=97.93  E-value=1.9e-06  Score=66.19  Aligned_cols=47  Identities=15%  Similarity=0.084  Sum_probs=37.6

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .+++.+......-++.+|||+|||+|.++..+++.+++|+++|+++.
T Consensus        17 ~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~   63 (244)
T 1qam_A           17 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHK   63 (244)
T ss_dssp             HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHH
T ss_pred             HHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHH
Confidence            34444554433446789999999999999999998899999999984

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=97.93  E-value=1.9e-06  Score=62.25  Aligned_cols=36  Identities=22%  Similarity=0.275  Sum_probs=32.3

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ..++++|||+|||+|..++.+++.+.+|+++|.++.
T Consensus        30 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~   65 (199)
T 2xvm_A           30 VVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAM   65 (199)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHH
Confidence            346789999999999999999988889999999984

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=97.93  E-value=8.6e-07  Score=67.19  Aligned_cols=45  Identities=9%  Similarity=-0.066  Sum_probs=35.4

Q ss_pred             ccccEEEecCCCCCchhhhhhc--CCceEEccCCccceeccccCCCchh
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      ...+|||||||+|.+++.++..  +++|+++|+++.  .++.++.|...
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~--~leiar~~~~~   95 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRA--EIAFLSSIIGK   95 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHH--HHHHHHHHHHH
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHH--HHHHHHHHHHh
Confidence            4679999999999999998876  559999999994  45555555433

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=97.92  E-value=1.8e-06  Score=66.58  Aligned_cols=35  Identities=29%  Similarity=0.412  Sum_probs=32.4

Q ss_pred             cccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .++.+|||+|||+|..++.+++.|++|+++|+++.
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~  153 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNEN  153 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHH
Confidence            37889999999999999999999999999999984

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=97.92  E-value=2.3e-06  Score=64.55  Aligned_cols=34  Identities=29%  Similarity=0.353  Sum_probs=31.3

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..++.+++.|.+|+++|+++.
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~   74 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEE   74 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHH
Confidence            5679999999999999999999999999999984

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.92  E-value=9.2e-06  Score=58.82  Aligned_cols=49  Identities=20%  Similarity=0.068  Sum_probs=35.9

Q ss_pred             hHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-C----------CceEEccCCcc
Q 032395           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G----------SNVTLTDDSNR  103 (141)
Q Consensus        55 s~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-g----------a~Vv~tD~~~~  103 (141)
                      +..|.+........-++.+|||+|||+|..++.+++. +          .+|+++|+++.
T Consensus         7 ~~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~   66 (196)
T 2nyu_A            7 AFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI   66 (196)
T ss_dssp             HHHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC
T ss_pred             HHHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc
Confidence            3344444433333336789999999999999988876 4          68999999984

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.91  E-value=1.4e-06  Score=67.78  Aligned_cols=48  Identities=19%  Similarity=0.191  Sum_probs=38.2

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCccc-----eeccccCCCchhh
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI-----ELLMTSLPPSHIC  117 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~-----~~l~n~~~N~~~n  117 (141)
                      ++.+|||+|||+|..++.+|+.+++|+++|.++.+     +.++.++.|...|
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~  135 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQ  135 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhh
Confidence            56899999999999999999999999999999932     3455555555443

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.91  E-value=2.4e-06  Score=63.73  Aligned_cols=51  Identities=16%  Similarity=0.216  Sum_probs=39.1

Q ss_pred             eehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        52 W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      |... .+..++.......++.+|||+|||+|..+..+++.+.+|+++|.++.
T Consensus        53 ~~~~-~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~  103 (231)
T 1vbf_A           53 TTAL-NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEK  103 (231)
T ss_dssp             ECCH-HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHH
T ss_pred             cCCH-HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHH
Confidence            4433 34444544444457789999999999999999998899999999984

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=97.90  E-value=3.4e-06  Score=66.35  Aligned_cols=47  Identities=21%  Similarity=0.301  Sum_probs=37.5

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccc
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI  104 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~  104 (141)
                      .+++.+......-++ +|||+|||+|.++..+++.+++|+++|+++.+
T Consensus        34 ~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~   80 (271)
T 3fut_A           34 AHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRL   80 (271)
T ss_dssp             HHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGG
T ss_pred             HHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHH
Confidence            344445554444467 99999999999999999999999999999953

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=97.89  E-value=2.5e-06  Score=64.48  Aligned_cols=47  Identities=15%  Similarity=0.196  Sum_probs=36.1

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR  103 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~  103 (141)
                      ..+.++.......++++|||+|||+|..++.+++.  +.+|+++|+++.
T Consensus        58 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~  106 (232)
T 3ntv_A           58 LTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNET  106 (232)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHH
T ss_pred             HHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHH
Confidence            34444444434447889999999999999998884  459999999984

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=97.89  E-value=1.8e-06  Score=67.16  Aligned_cols=46  Identities=15%  Similarity=0.034  Sum_probs=37.1

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC--ceEEccCCccceeccccCCCchhh
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ++++|||+|||+|..++.+++.+.  +|+++|.++  +.++.++.|+..|
T Consensus       119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~--~av~~a~~n~~~n  166 (272)
T 3a27_A          119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNP--TAYHYLCENIKLN  166 (272)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCH--HHHHHHHHHHHHT
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHHc
Confidence            678999999999999999998743  999999998  4566555555544

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.88  E-value=2.5e-06  Score=65.21  Aligned_cols=48  Identities=6%  Similarity=0.059  Sum_probs=36.7

Q ss_pred             HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCcc
Q 032395           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNR  103 (141)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~  103 (141)
                      ...+.++.......++++|||+|||+|..++.+++.   +.+|+++|+++.
T Consensus        49 ~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~   99 (248)
T 3tfw_A           49 ANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAH   99 (248)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHH
T ss_pred             HHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHH
Confidence            344444444333447899999999999999988886   569999999984

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=97.88  E-value=4.5e-06  Score=62.11  Aligned_cols=34  Identities=18%  Similarity=-0.025  Sum_probs=31.6

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..+..+++.+.+|+++|.++.
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~   70 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQE   70 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHH
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHH
Confidence            6789999999999999999999999999999984

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=97.88  E-value=9.9e-06  Score=65.06  Aligned_cols=44  Identities=20%  Similarity=0.403  Sum_probs=36.7

Q ss_pred             HHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        60 ~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      +.+......+++++|||+|||+|.+++.+++.++ +|+++|.++.
T Consensus        40 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~   84 (348)
T 2y1w_A           40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTM   84 (348)
T ss_dssp             HHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTH
T ss_pred             HHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHH
Confidence            3455544556889999999999999999999887 9999999973

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=97.87  E-value=4e-06  Score=66.29  Aligned_cols=46  Identities=20%  Similarity=0.166  Sum_probs=37.2

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      +++.+......-++.+|||+|||+|..+..+++.+++|+++|+++.
T Consensus        30 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~   75 (299)
T 2h1r_A           30 ILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSR   75 (299)
T ss_dssp             HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHH
T ss_pred             HHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHH
Confidence            4444544434446789999999999999999998889999999984

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=97.87  E-value=2.3e-06  Score=69.91  Aligned_cols=47  Identities=17%  Similarity=0.029  Sum_probs=38.0

Q ss_pred             cccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      .++++|||+|||+|..++.+++.|+ +|+++|+++.  .++.++.|+..|
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~--al~~a~~n~~~n  266 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQE--ALDIARQNVELN  266 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHH--HHHHHHHHHHHT
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHHc
Confidence            3788999999999999999999876 9999999983  555555554433

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=97.87  E-value=2.3e-06  Score=63.34  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=31.6

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..++.+++.+++|+++|+++.
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~   63 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSE   63 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHH
Confidence            6789999999999999999999999999999984

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=97.86  E-value=2.1e-06  Score=64.40  Aligned_cols=34  Identities=18%  Similarity=0.108  Sum_probs=31.7

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..++.+++.+++|+++|+++.
T Consensus        48 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~   81 (226)
T 3m33_A           48 PQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPE   81 (226)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHH
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHH
Confidence            6789999999999999999999999999999984

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=97.86  E-value=3.7e-06  Score=61.72  Aligned_cols=35  Identities=20%  Similarity=0.179  Sum_probs=32.0

Q ss_pred             cccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .++++|||+|||+|..+..+++.+++|+++|+++.
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~   85 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRT   85 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHH
Confidence            36789999999999999999999999999999984

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=97.86  E-value=3.2e-06  Score=65.85  Aligned_cols=36  Identities=19%  Similarity=0.098  Sum_probs=31.9

Q ss_pred             ccccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      .-++.+|||+|||+|..++.+++. |++|+++|+++.
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~  106 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSEN  106 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHH
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHH
Confidence            346789999999999999988887 889999999984

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=97.85  E-value=5.2e-06  Score=70.97  Aligned_cols=34  Identities=24%  Similarity=0.293  Sum_probs=31.6

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|+++..+|+.|++|+++|.++.
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~   99 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQE   99 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHH
Confidence            4569999999999999999999999999999984

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=97.85  E-value=2e-06  Score=66.88  Aligned_cols=34  Identities=21%  Similarity=0.340  Sum_probs=29.7

Q ss_pred             ccccEEEecCCCCCchhhhhhc----CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~----ga~Vv~tD~~~~  103 (141)
                      +|.+|||||||+|..++.+++.    +++|+++|+++.
T Consensus        70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~  107 (261)
T 4gek_A           70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPA  107 (261)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHH
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHH
Confidence            6789999999999999888764    458999999985

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=97.84  E-value=2.5e-06  Score=64.78  Aligned_cols=42  Identities=12%  Similarity=0.048  Sum_probs=32.5

Q ss_pred             ccccEEEecCCCCCchhhhhhc--CCceEEccCCccceeccccCCC
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      ++++|||+|||+|..++.+++.  +++|+++|+++.  .++.++.|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~--~~~~a~~~  108 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDM--CFNYAKKN  108 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHH--HHHHHHHH
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHH--HHHHHHHH
Confidence            4679999999999999877765  569999999984  44433333

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=97.84  E-value=3.3e-06  Score=63.48  Aligned_cols=35  Identities=11%  Similarity=0.065  Sum_probs=32.0

Q ss_pred             cccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      -++.+|||+|||+|..+..+++.+.+|+++|+++.
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~   89 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKS   89 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHH
Confidence            36789999999999999999999889999999984

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.84  E-value=1.4e-05  Score=55.90  Aligned_cols=49  Identities=20%  Similarity=0.125  Sum_probs=36.7

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-C--CceEEccCCc
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSN  102 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~  102 (141)
                      +...+.+.+......-++.+|||+|||+|..+..+++. +  .+|+++|.++
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~   57 (180)
T 1ej0_A            6 AWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP   57 (180)
T ss_dssp             HHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC
T ss_pred             HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc
Confidence            34445555544433446789999999999999988876 3  5999999998

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=97.83  E-value=4.6e-06  Score=66.34  Aligned_cols=47  Identities=15%  Similarity=0.101  Sum_probs=38.2

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .+++.+......-++.+|||+|||+|.++..+++.+++|+++|+++.
T Consensus        37 ~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~   83 (295)
T 3gru_A           37 NFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKS   83 (295)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGG
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHH
Confidence            34455555444457889999999999999999998889999999994

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=97.83  E-value=5.8e-06  Score=61.70  Aligned_cols=34  Identities=21%  Similarity=0.274  Sum_probs=31.6

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..+..+++.+++|+++|+++.
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~   86 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEV   86 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHH
Confidence            6789999999999999999999999999999984

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=97.83  E-value=8.2e-06  Score=61.33  Aligned_cols=34  Identities=15%  Similarity=0.122  Sum_probs=31.3

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..+..+++.+++|+++|+++.
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~   74 (240)
T 3dli_A           41 GCRRVLDIGCGRGEFLELCKEEGIESIGVDINED   74 (240)
T ss_dssp             TCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHH
T ss_pred             CCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHH
Confidence            5689999999999999999998999999999984

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=97.83  E-value=4e-06  Score=61.91  Aligned_cols=34  Identities=21%  Similarity=0.217  Sum_probs=31.1

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..+..+++.+.+|+++|+++.
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~   71 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISED   71 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHH
Confidence            3789999999999999999998889999999984

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=97.83  E-value=4.9e-06  Score=65.28  Aligned_cols=46  Identities=15%  Similarity=0.126  Sum_probs=37.3

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      +++.+......-++.+|||+|||+|..+..+++.+++|+++|+++.
T Consensus        16 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~   61 (285)
T 1zq9_A           16 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPR   61 (285)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHH
T ss_pred             HHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHH
Confidence            4444554444446789999999999999999999899999999984

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=97.82  E-value=4.7e-06  Score=64.46  Aligned_cols=54  Identities=15%  Similarity=0.110  Sum_probs=40.3

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhcC-CceEEccCCccceeccccCCC
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~g-a~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      +++.+.......++.+|||+|||+|.++..+++.+ ++|+++|+++.  +++.++.|
T Consensus        19 i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~--~~~~~~~~   73 (249)
T 3ftd_A           19 VLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDRE--MVENLKSI   73 (249)
T ss_dssp             HHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHH--HHHHHTTS
T ss_pred             HHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHH--HHHHHHhc
Confidence            34444444444467899999999999999999986 69999999994  44444444

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=97.82  E-value=6.3e-06  Score=62.45  Aligned_cols=33  Identities=15%  Similarity=0.010  Sum_probs=28.6

Q ss_pred             ccccEEEecCCCCCchhhhhh--cCCceEEccCCc
Q 032395           70 SGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSN  102 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~--~ga~Vv~tD~~~  102 (141)
                      ++.+|||+|||+|..++.+++  .+++|+++|+++
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~   58 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVK   58 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCC
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCH
Confidence            678999999999999998884  355999999994

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=97.82  E-value=5.5e-06  Score=67.13  Aligned_cols=59  Identities=15%  Similarity=0.055  Sum_probs=42.4

Q ss_pred             HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ..|..++..... .++++|||||||+|..++.+|+.+.+|+++|.++  +.++.++.|+..|
T Consensus       200 ~~l~~~~~~~~~-~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~--~ai~~a~~n~~~n  258 (369)
T 3bt7_A          200 IQMLEWALDVTK-GSKGDLLELYCGNGNFSLALARNFDRVLATEIAK--PSVAAAQYNIAAN  258 (369)
T ss_dssp             HHHHHHHHHHTT-TCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCH--HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh-cCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCH--HHHHHHHHHHHHc
Confidence            344555544322 2467899999999999999998767999999999  4555555555444

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.82  E-value=4.5e-06  Score=62.13  Aligned_cols=47  Identities=15%  Similarity=0.117  Sum_probs=36.0

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCcc
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNR  103 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~  103 (141)
                      ..+.++.......++++|||+|||+|..++.+++.   +.+|+++|.++.
T Consensus        56 ~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~  105 (229)
T 2avd_A           56 EQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQ  105 (229)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSH
T ss_pred             HHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHH
Confidence            34445544334457889999999999999988875   459999999984

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.82  E-value=3.3e-06  Score=70.16  Aligned_cols=57  Identities=12%  Similarity=0.156  Sum_probs=42.8

Q ss_pred             hHHHHHHHHhhhcccc-cccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchh
Q 032395           55 SVILAEYVWQQRYRFS-GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        55 s~~la~~l~~~~~~~~-~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      +...+.|..   ..++ |++|||||||+|..++.+++.+++|+++|.++.  .++.++.|+..
T Consensus        80 ~e~vA~~~a---~~l~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~--~l~~Ar~N~~~  137 (410)
T 3ll7_A           80 GAVTSSYKS---RFIREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDE--TAVAARHNIPL  137 (410)
T ss_dssp             CHHHHHHGG---GGSCTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHH---HhcCCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHH--HHHHHHHhHHH
Confidence            344455532   2344 899999999999999999999999999999994  55555555543

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=97.81  E-value=2.4e-06  Score=63.93  Aligned_cols=34  Identities=18%  Similarity=-0.005  Sum_probs=29.9

Q ss_pred             ccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.+|+.  +.+|+++|+++.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~   73 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKS   73 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechH
Confidence            4678999999999999988886  459999999984

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.81  E-value=2.9e-06  Score=64.54  Aligned_cols=44  Identities=11%  Similarity=-0.040  Sum_probs=34.4

Q ss_pred             ccccEEEecCCCCCchhhhhhc----CCceEEccCCccceeccccCCCch
Q 032395           70 SGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~----ga~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      ++.+|||+|||+|..++.+++.    +.+|+++|+++.  .++.++.|+.
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~--~l~~A~~~~~   98 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPA--PLELAAKNLA   98 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHH--HHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHH--HHHHHHHHHH
Confidence            5679999999999999988876    459999999984  4554444443

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.81  E-value=4.8e-06  Score=64.34  Aligned_cols=58  Identities=16%  Similarity=0.126  Sum_probs=40.7

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc--CCceEEccCCccceeccccCCCc
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      .+..+.+.+..... -++.+|||+|||+|..++.+++.  +++|+++|+++.  .++.++.|+
T Consensus        94 ~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~--~l~~a~~n~  153 (276)
T 2b3t_A           94 DTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPD--AVSLAQRNA  153 (276)
T ss_dssp             THHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHH--HHHHHHHHH
T ss_pred             hHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHH
Confidence            34445555544322 35679999999999999988865  459999999984  455444444

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=97.81  E-value=4.7e-06  Score=70.25  Aligned_cols=41  Identities=22%  Similarity=0.460  Sum_probs=34.1

Q ss_pred             HHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCc
Q 032395           62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSN  102 (141)
Q Consensus        62 l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~  102 (141)
                      +.......++++|||+|||+|.+++.+++.++ +|+++|+++
T Consensus       150 il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~  191 (480)
T 3b3j_A          150 ILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST  191 (480)
T ss_dssp             HHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH
T ss_pred             HHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH
Confidence            33333445788999999999999999999876 999999997

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.80  E-value=3.9e-06  Score=61.91  Aligned_cols=52  Identities=15%  Similarity=0.153  Sum_probs=38.0

Q ss_pred             eeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcC---CceEEccCCcc
Q 032395           51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNR  103 (141)
Q Consensus        51 ~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~g---a~Vv~tD~~~~  103 (141)
                      .|.... +..++.......++.+|||+|||+|..++.+++.+   .+|+++|.++.
T Consensus        59 ~~~~~~-~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~  113 (215)
T 2yxe_A           59 TISAIH-MVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPE  113 (215)
T ss_dssp             EECCHH-HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHH
T ss_pred             EeCcHH-HHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHH
Confidence            344333 34444444344578899999999999999888865   69999999984

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=97.79  E-value=5.3e-06  Score=65.38  Aligned_cols=46  Identities=11%  Similarity=0.047  Sum_probs=36.6

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCc----eEEccCCcc
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSN----VTLTDDSNR  103 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~----Vv~tD~~~~  103 (141)
                      +++.+......-++.+|||+|||+|.++..+++.+++    |+++|+++.
T Consensus        30 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~   79 (279)
T 3uzu_A           30 VIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRD   79 (279)
T ss_dssp             HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHH
T ss_pred             HHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHH
Confidence            3444444444446789999999999999999988776    999999994

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.79  E-value=4.7e-06  Score=63.12  Aligned_cols=45  Identities=18%  Similarity=0.141  Sum_probs=35.3

Q ss_pred             cccccccEEEecCCCCCchhhhhhc---CCceEEccCCccceeccccCCC
Q 032395           67 YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      ...++++|||+|||+|..++.+++.   +.+|+++|.++.  .++.++.|
T Consensus        90 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~--~~~~a~~~  137 (255)
T 3mb5_A           90 GISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIRED--FAKLAWEN  137 (255)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHH--HHHHHHHH
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHH--HHHHHHHH
Confidence            3447889999999999999998887   459999999983  44444444

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=97.78  E-value=1.9e-05  Score=58.61  Aligned_cols=36  Identities=19%  Similarity=0.124  Sum_probs=32.7

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ..++++|||+|||+|..+..+++.+.+|+++|.++.
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~   75 (250)
T 2p7i_A           40 FFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEE   75 (250)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHH
T ss_pred             hcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHH
Confidence            457889999999999999999998889999999984

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=97.78  E-value=5.5e-06  Score=62.43  Aligned_cols=49  Identities=12%  Similarity=0.096  Sum_probs=38.1

Q ss_pred             eeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        51 ~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .||.+.-+.+.+    ..-++++|||+|||+|..+..+++.+.+|+++|.++.
T Consensus         6 ~~~~~~~~~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~   54 (239)
T 1xxl_A            6 HHHSLGLMIKTA----ECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKE   54 (239)
T ss_dssp             CHHHHHHHHHHH----TCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHH
T ss_pred             cCCCcchHHHHh----CcCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHH
Confidence            355544444443    3347789999999999999999998889999999984

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.78  E-value=4.8e-06  Score=62.70  Aligned_cols=49  Identities=12%  Similarity=0.225  Sum_probs=38.3

Q ss_pred             hHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcC-CceEEccCCcc
Q 032395           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNR  103 (141)
Q Consensus        55 s~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~g-a~Vv~tD~~~~  103 (141)
                      ...++..+.......++.+|||+|||+|..++.+++.+ .+|+++|.++.
T Consensus        76 ~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~  125 (235)
T 1jg1_A           76 APHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPE  125 (235)
T ss_dssp             CHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHH
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHH
Confidence            34455555554444578899999999999999998877 79999999984

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=97.78  E-value=3e-06  Score=62.88  Aligned_cols=34  Identities=24%  Similarity=0.072  Sum_probs=29.7

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.+++..  .+|+++|+++.
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~   76 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKS   76 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHH
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHH
Confidence            46799999999999999888763  59999999984

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=97.77  E-value=6.1e-06  Score=62.76  Aligned_cols=34  Identities=18%  Similarity=0.099  Sum_probs=31.3

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..+..+++.+++|+++|+++.
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~   83 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFGTVEGLELSAD   83 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHH
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHH
Confidence            5689999999999999999999999999999984

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.77  E-value=2.7e-06  Score=64.07  Aligned_cols=34  Identities=15%  Similarity=0.260  Sum_probs=30.6

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.+++.+. +|+++|.++.
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~   94 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDG   94 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHH
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHH
Confidence            578999999999999998888766 9999999995

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.77  E-value=4.4e-06  Score=64.41  Aligned_cols=47  Identities=28%  Similarity=0.350  Sum_probs=37.2

Q ss_pred             ehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        53 ~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      --++.|+.|+.    ..++++|||+|||+|.+++.+++..  .+|+++|+++.
T Consensus        23 ~D~~lL~~~~~----~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~   71 (260)
T 2ozv_A           23 MDAMLLASLVA----DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQE   71 (260)
T ss_dssp             CHHHHHHHTCC----CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHH
T ss_pred             cHHHHHHHHhc----ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHH
Confidence            35566666653    2367899999999999999988875  49999999984

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=97.77  E-value=5.8e-06  Score=61.61  Aligned_cols=36  Identities=28%  Similarity=0.283  Sum_probs=32.3

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      ..++++|||+|||+|..+..+++.+. +|+++|+++.
T Consensus        41 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~   77 (243)
T 3bkw_A           41 EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEK   77 (243)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHH
T ss_pred             ccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHH
Confidence            34778999999999999999998888 9999999984

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.77  E-value=5.1e-06  Score=62.72  Aligned_cols=50  Identities=16%  Similarity=0.123  Sum_probs=38.0

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCcc
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNR  103 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~  103 (141)
                      .+...+.++.......++++|||+|||+|..++.+++.   +.+|+++|.++.
T Consensus        44 ~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~   96 (239)
T 2hnk_A           44 ISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEE   96 (239)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHH
T ss_pred             cCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHH
Confidence            34444555555444447889999999999999988876   469999999984

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=97.77  E-value=6.1e-06  Score=62.29  Aligned_cols=36  Identities=33%  Similarity=0.432  Sum_probs=32.5

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      ..++++|||+|||+|..+..+++.++ +|+++|+++.
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~   78 (253)
T 3g5l_A           42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSER   78 (253)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHH
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHH
Confidence            44788999999999999999999888 9999999984

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.76  E-value=1.3e-05  Score=61.00  Aligned_cols=35  Identities=17%  Similarity=0.054  Sum_probs=30.8

Q ss_pred             cccccEEEecCCCCCchhhhhhc------CCceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKV------GSNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~------ga~Vv~tD~~~~  103 (141)
                      .++++|||+|||+|..++.+++.      +++|+++|+++.
T Consensus        80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~  120 (236)
T 2bm8_A           80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLS  120 (236)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCT
T ss_pred             cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChH
Confidence            36789999999999999988876      569999999985

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.76  E-value=1.3e-05  Score=62.21  Aligned_cols=44  Identities=14%  Similarity=0.142  Sum_probs=33.4

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCc--eEEccCCcc
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSN--VTLTDDSNR  103 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~--Vv~tD~~~~  103 (141)
                      +++.+......-++.+|||+|||+|.++. +++ +++  |+++|+++.
T Consensus         9 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~   54 (252)
T 1qyr_A            9 VIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRD   54 (252)
T ss_dssp             HHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHH
T ss_pred             HHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHH
Confidence            44445554444467899999999999999 654 566  999999984

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=97.76  E-value=5.9e-06  Score=68.63  Aligned_cols=47  Identities=21%  Similarity=0.237  Sum_probs=39.4

Q ss_pred             cccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      -++++|||+|||+|..++.+|+.+++|+++|.++  +.++.++.|+..|
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~--~ai~~A~~n~~~n  335 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNE--FAIEMARRNVEIN  335 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHH
T ss_pred             CCCCEEEEeeccchHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHHc
Confidence            3678999999999999999999888999999998  4666666666554

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=97.75  E-value=3.2e-06  Score=62.18  Aligned_cols=34  Identities=32%  Similarity=0.498  Sum_probs=31.4

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..+..+++.+++|+++|+++.
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~   76 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPE   76 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHH
Confidence            5789999999999999999998899999999984

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=97.75  E-value=4.2e-06  Score=61.72  Aligned_cols=34  Identities=29%  Similarity=0.209  Sum_probs=31.6

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..+..+++.+++|+++|+++.
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~   78 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSRE   78 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHH
Confidence            6789999999999999999988889999999984

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=97.75  E-value=1.8e-05  Score=57.81  Aligned_cols=34  Identities=26%  Similarity=0.256  Sum_probs=31.3

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..+..+++.+++|+++|+++.
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~   79 (218)
T 3ou2_A           46 IRGDVLELASGTGYWTRHLSGLADRVTALDGSAE   79 (218)
T ss_dssp             SCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHH
Confidence            5679999999999999999998999999999984

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.75  E-value=7e-06  Score=64.96  Aligned_cols=49  Identities=22%  Similarity=0.223  Sum_probs=37.6

Q ss_pred             hHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCc---eEEccCCcc
Q 032395           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSN---VTLTDDSNR  103 (141)
Q Consensus        55 s~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~---Vv~tD~~~~  103 (141)
                      ...+...+......-++.+|||+|||+|..++.+++.+.+   |+++|+++.
T Consensus        60 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~  111 (317)
T 1dl5_A           60 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRK  111 (317)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHH
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHH
Confidence            3345555555444447889999999999999999887654   999999984

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=97.75  E-value=3.4e-06  Score=64.18  Aligned_cols=34  Identities=6%  Similarity=-0.034  Sum_probs=30.1

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC--ceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.+++.++  +|+++|+++.
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~   84 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQ   84 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHH
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHH
Confidence            567999999999999999998764  7999999984

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.74  E-value=6.1e-06  Score=61.91  Aligned_cols=37  Identities=19%  Similarity=0.171  Sum_probs=32.3

Q ss_pred             cccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ...++.+|||+|||+|..++.+++.+.+|+++|.++.
T Consensus        88 ~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~  124 (248)
T 2yvl_A           88 NLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEE  124 (248)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHH
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHH
Confidence            3446789999999999999988888779999999984

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.74  E-value=3.5e-06  Score=61.35  Aligned_cols=42  Identities=19%  Similarity=0.222  Sum_probs=32.9

Q ss_pred             ccccEEEecCCCCCchhhhhhc-C--CceEEccCCccceeccccCCC
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      ++++|||+|||+|..++.+++. +  .+|+++|+++.  .++.++.|
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~--~~~~a~~~   66 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDK--AIANTTKK   66 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHH--HHHHHHHH
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHH
Confidence            6789999999999999988876 2  49999999984  44443333

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=97.74  E-value=7.8e-06  Score=59.69  Aligned_cols=35  Identities=26%  Similarity=0.281  Sum_probs=28.9

Q ss_pred             cccccEEEecCCCCCchh-hhhhcCCceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGL-VAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l-~~a~~ga~Vv~tD~~~~  103 (141)
                      -++++|||+|||+|..++ .++..+.+|+++|.++.
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~   57 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDL   57 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHH
Confidence            357899999999999854 44567789999999984

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.74  E-value=4e-06  Score=73.68  Aligned_cols=47  Identities=19%  Similarity=0.074  Sum_probs=39.4

Q ss_pred             cccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      .+|++|||+|||||..++.+++.|+ +|+++|+++  ..++.++.|+..|
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~--~al~~a~~N~~~n  585 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSR--TYLEWAERNLRLN  585 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHT
T ss_pred             cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCH--HHHHHHHHHHHHc
Confidence            4789999999999999999999888 699999999  4566666665555

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=97.74  E-value=1e-05  Score=59.78  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=30.8

Q ss_pred             ccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.+++.  +++|+++|+++.
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~   62 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKS   62 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGG
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHH
Confidence            6789999999999999999887  459999999995

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.73  E-value=6.7e-06  Score=61.62  Aligned_cols=46  Identities=13%  Similarity=0.181  Sum_probs=35.2

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR  103 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~  103 (141)
                      .+.++.......++++|||+|||+|..++.+++.  +.+|+++|.++.
T Consensus        42 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~   89 (233)
T 2gpy_A           42 GMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDER   89 (233)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHH
T ss_pred             HHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHH
Confidence            3344444333447789999999999999988886  569999999984

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=97.73  E-value=4.9e-06  Score=61.42  Aligned_cols=44  Identities=18%  Similarity=0.067  Sum_probs=34.5

Q ss_pred             cccccEEEecCCCCCchhhhhhc---CCceEEccCCccceeccccCCCc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      .++++|||+|||+|..++.+++.   +.+|+++|.++.  .++.++.|+
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~--~~~~a~~~~  101 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRD--NVEHARRML  101 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHH--HHHHHHHHH
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHH
Confidence            46789999999999999988876   569999999984  444444443

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=97.72  E-value=4.1e-06  Score=68.30  Aligned_cols=46  Identities=24%  Similarity=0.197  Sum_probs=37.6

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ++++|||+|||+|..++.+++.|+ +|+++|+++.  .++.++.|+..|
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~--~l~~a~~n~~~n  263 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPR--AIETAKENAKLN  263 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHH--HHHHHHHHHHHT
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHH--HHHHHHHHHHHc
Confidence            678999999999999999999877 9999999983  555555555443

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=97.71  E-value=7.7e-06  Score=64.14  Aligned_cols=34  Identities=24%  Similarity=0.245  Sum_probs=30.8

Q ss_pred             ccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.+++. +++|+++|+++.
T Consensus       117 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~  151 (312)
T 3vc1_A          117 PDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAA  151 (312)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHH
Confidence            5789999999999999988887 889999999984

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=97.71  E-value=3.3e-06  Score=63.23  Aligned_cols=45  Identities=16%  Similarity=0.056  Sum_probs=35.4

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .+.+++...  .+++.+|||+|||+|..++.+++.+++|+++|+++.
T Consensus        55 ~l~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~   99 (235)
T 3lcc_A           55 LIVHLVDTS--SLPLGRALVPGCGGGHDVVAMASPERFVVGLDISES   99 (235)
T ss_dssp             HHHHHHHTT--CSCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHH
T ss_pred             HHHHHHHhc--CCCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHH
Confidence            344444332  335679999999999999999888889999999984

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=97.71  E-value=6.2e-06  Score=60.14  Aligned_cols=44  Identities=23%  Similarity=0.142  Sum_probs=35.4

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      +..++...  .-++.+|||+|||+|..++.+++.+. +|+++|+++.
T Consensus        32 ~~~~l~~~--~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~   76 (215)
T 2pxx_A           32 FRALLEPE--LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSV   76 (215)
T ss_dssp             HHHHHGGG--CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHH
T ss_pred             HHHHHHHh--cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHH
Confidence            44445443  23678999999999999999998887 9999999984

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=97.71  E-value=7.8e-06  Score=60.22  Aligned_cols=35  Identities=20%  Similarity=0.235  Sum_probs=31.0

Q ss_pred             cccccEEEecCCCCCchhhhhhcC---CceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~g---a~Vv~tD~~~~  103 (141)
                      -++++|||+|||+|..+..+++.+   .+|+++|.++.
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~   73 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEE   73 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHH
Confidence            367899999999999999998876   59999999984

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.70  E-value=2.1e-05  Score=61.36  Aligned_cols=49  Identities=22%  Similarity=0.062  Sum_probs=38.3

Q ss_pred             ehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        53 ~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .++..|.+.+.. ...-++++|||||||+|..+..+++. .+|+++|+++.
T Consensus        58 R~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~m  106 (265)
T 2oxt_A           58 RGTAKLAWMEER-GYVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYTL  106 (265)
T ss_dssp             THHHHHHHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEECC
T ss_pred             hHHHHHHHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECchh
Confidence            455556655554 22336889999999999999999888 79999999983

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=97.70  E-value=8.6e-06  Score=66.16  Aligned_cols=57  Identities=11%  Similarity=0.065  Sum_probs=43.5

Q ss_pred             HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC--ceEEccCCccceeccccCCCch
Q 032395           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      ..++..+.... .-++.+|||+|||+|..++.+++.+.  +|+++|+++.  .++.++.|+.
T Consensus       204 ~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~--~l~~A~~n~~  262 (373)
T 3tm4_A          204 ASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRK--HLIGAEMNAL  262 (373)
T ss_dssp             HHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHH--HHHHHHHHHH
T ss_pred             HHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHH--HHHHHHHHHH
Confidence            34555555544 44788999999999999999999887  9999999994  5555555543

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=97.69  E-value=6.2e-06  Score=63.27  Aligned_cols=56  Identities=16%  Similarity=0.115  Sum_probs=39.2

Q ss_pred             HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCccceeccccCCC
Q 032395           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      ...+.++.......++++|||+|||+|..++.+++.   +.+|+++|.++.  .++.++.|
T Consensus        65 ~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~--~~~~a~~~  123 (247)
T 1sui_A           65 ADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKE--NYELGLPV  123 (247)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCH--HHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHH
Confidence            333444443333446789999999999999988875   569999999984  34433333

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.69  E-value=8.5e-06  Score=61.46  Aligned_cols=37  Identities=22%  Similarity=0.186  Sum_probs=31.5

Q ss_pred             cccccccEEEecCCCCCchhhhhhc---CCceEEccCCcc
Q 032395           67 YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNR  103 (141)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~  103 (141)
                      ...++.+|||+|||+|..++.+++.   +.+|+++|.++.
T Consensus        93 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~  132 (258)
T 2pwy_A           93 DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPH  132 (258)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHH
T ss_pred             CCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHH
Confidence            3446789999999999999988887   459999999984

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=97.68  E-value=2.5e-05  Score=60.03  Aligned_cols=46  Identities=17%  Similarity=0.110  Sum_probs=35.5

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhh-hcCCceEEccCCcc
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAA-KVGSNVTLTDDSNR  103 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a-~~ga~Vv~tD~~~~  103 (141)
                      +.+.+......-++.+|||+|||+|..++.++ +.+++|+++|+++.
T Consensus        52 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~   98 (287)
T 1kpg_A           52 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKN   98 (287)
T ss_dssp             HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHH
T ss_pred             HHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHH
Confidence            34444443334467899999999999999887 56889999999984

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=97.68  E-value=8.3e-06  Score=62.81  Aligned_cols=34  Identities=26%  Similarity=0.368  Sum_probs=31.2

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..+..+++.+++|+++|+++.
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~  101 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQ  101 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHH
Confidence            4679999999999999999998999999999984

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.68  E-value=2.7e-05  Score=59.31  Aligned_cols=34  Identities=32%  Similarity=0.426  Sum_probs=31.6

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..+..+++.+++|+++|.++.
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~   87 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKE   87 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHH
Confidence            6789999999999999999988889999999984

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=97.68  E-value=7.3e-06  Score=63.73  Aligned_cols=34  Identities=26%  Similarity=0.230  Sum_probs=31.0

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.+++.+.+|+++|+++.
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~  115 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTS  115 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHH
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHH
Confidence            4569999999999999999999999999999984

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=97.68  E-value=5.1e-06  Score=68.07  Aligned_cols=46  Identities=17%  Similarity=0.065  Sum_probs=39.4

Q ss_pred             ccccEEEecCCCCCchhhhhhc-CC-ceEEccCCccceeccccCCCchhh
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-ga-~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ++.+|||+|||+|..++.+++. ++ +|++.|+++  +.++.+++|++.|
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~--~av~~a~~N~~~n   94 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISE--DAYELMKRNVMLN   94 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCH--HHHHHHHHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCH--HHHHHHHHHHHHh
Confidence            7889999999999999998886 55 899999999  4677777777766

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=97.67  E-value=7.3e-06  Score=62.55  Aligned_cols=35  Identities=23%  Similarity=0.154  Sum_probs=31.2

Q ss_pred             cccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      -++++|||+|||+|..++.+++.+. +|+++|+++.
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~   80 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSG   80 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHH
Confidence            3678999999999999999888866 9999999984

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=97.67  E-value=8.1e-06  Score=61.53  Aligned_cols=51  Identities=20%  Similarity=0.064  Sum_probs=37.7

Q ss_pred             ehhHHHHHHHHhhh-cccccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           53 PCSVILAEYVWQQR-YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        53 ~as~~la~~l~~~~-~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      +....+...+.... ..-++.+|||+|||+|..++.+++.+. +|+++|+++.
T Consensus        28 ~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~   80 (257)
T 3f4k_A           28 PGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPD   80 (257)
T ss_dssp             SCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHH
T ss_pred             CCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHH
Confidence            44444444444432 333578999999999999999988765 9999999984

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.67  E-value=5.1e-06  Score=62.82  Aligned_cols=40  Identities=13%  Similarity=0.142  Sum_probs=31.4

Q ss_pred             ccEEEecCCCCCchhhhhhc---CCceEEccCCccceeccccCCC
Q 032395           72 ANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        72 ~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      .+|||+|||+|..++.+++.   +++|+++|.++.  .++.++.|
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~--~~~~a~~~  100 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESE--HQRQAKAL  100 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHH--HHHHHHHH
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHH
Confidence            39999999999999988874   469999999994  44444343

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=97.67  E-value=3e-05  Score=58.96  Aligned_cols=48  Identities=23%  Similarity=0.175  Sum_probs=36.8

Q ss_pred             HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      ..+.+.+......-++.+|||+|||+|..++.+++. +.+|+++|+++.
T Consensus        47 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~   95 (273)
T 3bus_A           47 DRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRP   95 (273)
T ss_dssp             HHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHH
Confidence            344455555444447789999999999999988874 679999999984

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.67  E-value=5.6e-06  Score=62.24  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=30.1

Q ss_pred             ccccEEEecCCCCCchhhhhhc-C-CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-g-a~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.+++. + .+|+++|.++.
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~  109 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPR  109 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHH
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHH
Confidence            5789999999999999988876 5 59999999984

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.67  E-value=2.5e-05  Score=61.36  Aligned_cols=48  Identities=23%  Similarity=0.041  Sum_probs=37.2

Q ss_pred             ehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCc
Q 032395           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN  102 (141)
Q Consensus        53 ~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~  102 (141)
                      .++..|.+.+.. ...-++++|||||||+|..+..+++. .+|+++|+++
T Consensus        66 R~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~  113 (276)
T 2wa2_A           66 RGTAKLAWIDER-GGVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT  113 (276)
T ss_dssp             HHHHHHHHHHHT-TSCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC
T ss_pred             hHHHHHHHHHHc-CCCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch
Confidence            455555555544 22236889999999999999999888 7999999998

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=97.66  E-value=3.5e-05  Score=57.99  Aligned_cols=34  Identities=24%  Similarity=0.213  Sum_probs=31.4

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.+++.+++|+++|.++.
T Consensus        39 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~   72 (263)
T 2yqz_A           39 EEPVFLELGVGTGRIALPLIARGYRYIALDADAA   72 (263)
T ss_dssp             SCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHH
Confidence            5789999999999999999988889999999984

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=97.66  E-value=6.3e-06  Score=62.17  Aligned_cols=34  Identities=15%  Similarity=0.112  Sum_probs=29.6

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.+|+..  ++|+++|.++.
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~   69 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSP   69 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHH
Confidence            56799999999999999888764  37999999984

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=97.66  E-value=5.3e-06  Score=66.52  Aligned_cols=45  Identities=13%  Similarity=0.043  Sum_probs=37.1

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ++++|||+|||+|..++. ++.+++|++.|.++  ..++.++.|+..|
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~--~ai~~a~~n~~~n  239 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINP--HAIELLKKNIKLN  239 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCH--HHHHHHHHHHHHT
T ss_pred             CCCEEEEccCccCHHHHh-ccCCCEEEEEECCH--HHHHHHHHHHHHc
Confidence            678999999999999999 88444999999998  4666666666655

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=97.66  E-value=1.7e-05  Score=59.32  Aligned_cols=34  Identities=18%  Similarity=0.136  Sum_probs=29.4

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..+..+++..  .+|+++|+++.
T Consensus        57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~   92 (210)
T 1nt2_A           57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAK   92 (210)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHH
T ss_pred             CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHH
Confidence            67899999999999988877653  49999999984

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.66  E-value=2.8e-05  Score=60.81  Aligned_cols=44  Identities=16%  Similarity=0.080  Sum_probs=34.9

Q ss_pred             HHHHhhhcccccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        60 ~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      +.+.......++.+|||+|||+|..++.+++. |++|+++|+++.
T Consensus        80 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~  124 (318)
T 2fk8_A           80 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKN  124 (318)
T ss_dssp             HHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHH
T ss_pred             HHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHH
Confidence            34444333446789999999999999988876 889999999984

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=97.65  E-value=2.6e-05  Score=60.27  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=29.2

Q ss_pred             cccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      .++.+|||+|||+|...++++.. +.+|+++|+++.
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~  105 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEV  105 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHH
Confidence            46789999999999977766654 569999999985

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=97.65  E-value=8.5e-06  Score=62.26  Aligned_cols=49  Identities=24%  Similarity=0.298  Sum_probs=37.3

Q ss_pred             hHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR  103 (141)
Q Consensus        55 s~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~  103 (141)
                      ...+..++......-++++|||+|||+|..+..+++.  +.+|+++|.++.
T Consensus        22 ~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~   72 (276)
T 3mgg_A           22 AETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPE   72 (276)
T ss_dssp             -CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHH
T ss_pred             HHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHH
Confidence            3345555555444447889999999999999988887  459999999984

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=97.64  E-value=6.8e-06  Score=59.92  Aligned_cols=33  Identities=27%  Similarity=0.375  Sum_probs=30.2

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++ +|||+|||+|..+..+++.+.+|+++|.++.
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~   62 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASLGYEVTAVDQSSV   62 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHH
T ss_pred             CC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHH
Confidence            45 9999999999999999998889999999984

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.63  E-value=1.1e-05  Score=62.14  Aligned_cols=44  Identities=16%  Similarity=0.237  Sum_probs=34.3

Q ss_pred             ccccccEEEecCCCCCchhhhhhc-C--CceEEccCCccceeccccCCC
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      ..++.+|||+|||+|..++.+++. +  .+|+++|.++.  .++.++.|
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~--~~~~a~~~  156 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREE--FAKLAESN  156 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHH--HHHHHHHH
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHH--HHHHHHHH
Confidence            346789999999999999988887 4  49999999984  44444444

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=97.63  E-value=7.2e-06  Score=58.66  Aligned_cols=34  Identities=29%  Similarity=0.342  Sum_probs=31.4

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..+..+++.+.+|+++|.++.
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~   79 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPI   79 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHH
Confidence            6789999999999999999988889999999984

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.63  E-value=1.1e-05  Score=60.87  Aligned_cols=46  Identities=15%  Similarity=0.137  Sum_probs=34.6

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCcc
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNR  103 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~  103 (141)
                      .+.++.......++++|||+|||+|..++.+++.   +.+|+++|.++.
T Consensus        60 ~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~  108 (232)
T 3cbg_A           60 QAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPN  108 (232)
T ss_dssp             HHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHH
T ss_pred             HHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHH
Confidence            3344433333346789999999999999988875   459999999984

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=97.62  E-value=1.4e-05  Score=60.01  Aligned_cols=34  Identities=15%  Similarity=0.039  Sum_probs=29.9

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.+++.+. +|+++|+++.
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~  113 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITED  113 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHH
Confidence            478999999999999998877755 9999999984

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.62  E-value=1.4e-05  Score=61.62  Aligned_cols=58  Identities=14%  Similarity=0.138  Sum_probs=44.0

Q ss_pred             ccceeeeehhH-HHHHHHHhhhc---ccccccEEEecCCCCCchhhhhhc-CC--ceEEccCCcc
Q 032395           46 EYGLFVWPCSV-ILAEYVWQQRY---RFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNR  103 (141)
Q Consensus        46 ~~g~~~W~as~-~la~~l~~~~~---~~~~~~vLELG~GtGl~~l~~a~~-ga--~Vv~tD~~~~  103 (141)
                      ....+.|+.-- -||..+...-.   .-+|.+|||+|||+|.....+|+. |.  +|++.|+++.
T Consensus        49 ~~e~r~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~  113 (233)
T 4df3_A           49 GEEYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPR  113 (233)
T ss_dssp             TEEEEECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHH
T ss_pred             CceeeeECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHH
Confidence            45789998644 35555555322   337899999999999999988875 54  8999999995

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=97.62  E-value=1.2e-05  Score=61.00  Aligned_cols=54  Identities=17%  Similarity=0.102  Sum_probs=38.1

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCccceeccccCCC
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      .+.++.......+.++|||+|||+|..++.+++.   +.+|+++|.++.  .++.++.|
T Consensus        58 ~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~--~~~~a~~~  114 (237)
T 3c3y_A           58 AGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDRE--AYEIGLPF  114 (237)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHH--HHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHH
Confidence            3344433333446789999999999999988875   569999999984  34433333

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=97.62  E-value=8.3e-06  Score=59.50  Aligned_cols=46  Identities=20%  Similarity=0.293  Sum_probs=34.1

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      .+++.+..... .+..+|||+|||+|..+..+++. +.+|+++|+++.
T Consensus        31 ~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~   77 (219)
T 3dlc_A           31 IIAENIINRFG-ITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKH   77 (219)
T ss_dssp             HHHHHHHHHHC-CCEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHH
T ss_pred             HHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHH
Confidence            34444444322 23349999999999999988887 559999999984

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=97.61  E-value=2.4e-05  Score=56.95  Aligned_cols=33  Identities=18%  Similarity=0.265  Sum_probs=31.0

Q ss_pred             cccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      +.+|||+|||+|..+..+++.+++|+++|+++.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~   74 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATR   74 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHH
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHH
Confidence            889999999999999999998999999999984

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=97.61  E-value=4.2e-05  Score=57.91  Aligned_cols=34  Identities=15%  Similarity=0.123  Sum_probs=31.4

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..+..+++.+.+|+++|.++.
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~   70 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTED   70 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHH
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHH
Confidence            6789999999999999999988889999999984

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=97.61  E-value=8.1e-06  Score=63.11  Aligned_cols=35  Identities=14%  Similarity=0.268  Sum_probs=30.7

Q ss_pred             cccccEEEecCCCCCchhhhhhc---CCceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~  103 (141)
                      .++.+|||+|||+|..++.+++.   +.+|+++|.++.
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~  146 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDED  146 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHH
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHH
Confidence            36789999999999999988886   569999999984

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=97.60  E-value=7.7e-06  Score=60.94  Aligned_cols=35  Identities=29%  Similarity=0.425  Sum_probs=30.9

Q ss_pred             cccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~  103 (141)
                      .++.+|||+|||+|..+..+++.  +.+|+++|.++.
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~   79 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEK   79 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHH
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHH
Confidence            36789999999999999988887  669999999984

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=97.60  E-value=4.3e-05  Score=58.96  Aligned_cols=37  Identities=16%  Similarity=0.119  Sum_probs=32.0

Q ss_pred             cccccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           67 YRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      ..-++.+|||+|||+|..+..+++. +++|+++|+++.
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~  116 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPV  116 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHH
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHH
Confidence            3446789999999999999988876 789999999984

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.60  E-value=1.4e-05  Score=61.23  Aligned_cols=37  Identities=27%  Similarity=0.349  Sum_probs=31.2

Q ss_pred             cccccccEEEecCCCCCchhhhhhc---CCceEEccCCcc
Q 032395           67 YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNR  103 (141)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~  103 (141)
                      ...++.+|||+|||+|..++.+++.   +.+|+++|.++.
T Consensus        96 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~  135 (280)
T 1i9g_A           96 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRAD  135 (280)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             CCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHH
Confidence            3446789999999999999988875   459999999984

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=97.59  E-value=5.4e-06  Score=67.44  Aligned_cols=46  Identities=17%  Similarity=0.039  Sum_probs=37.3

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ++++|||+|||+|..++.+++.+.+|+++|+++  +.++.++.|+..|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~--~~~~~a~~n~~~n  254 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFREVVAVDSSA--EALRRAEENARLN  254 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCH--HHHHHHHHHHHHT
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCH--HHHHHHHHHHHHc
Confidence            788999999999999999998855999999998  3555555555444

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.59  E-value=4.9e-06  Score=73.43  Aligned_cols=69  Identities=14%  Similarity=0.094  Sum_probs=43.9

Q ss_pred             cccEEEecCCCCCchhhh---hh-cC----------C-ceEEccCCcc-ceeccccCCCchhh------hhhh--cc---
Q 032395           71 GANVVELGAGTSLPGLVA---AK-VG----------S-NVTLTDDSNR-IELLMTSLPPSHIC------SRVL--QD---  123 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~---a~-~g----------a-~Vv~tD~~~~-~~~l~n~~~N~~~n------~~~~--~~---  123 (141)
                      ++.|+++|||+|+++.++   ++ .+          + +|++.|.++. ...++....|.-.+      +++.  ..   
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~  489 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK  489 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence            468999999999997543   22 23          2 8999999974 22333222221111      1221  11   


Q ss_pred             ---CCcceEEEEEE-eEEee
Q 032395          124 ---QSSLRLIIIEV-GIILL  139 (141)
Q Consensus       124 ---~~~v~v~~l~W-G~~ll  139 (141)
                         ..+++|++.+| |+|++
T Consensus       490 ~~~~ekVDIIVSElmGsfl~  509 (745)
T 3ua3_A          490 DRGFEQPDIIVSELLGSFGD  509 (745)
T ss_dssp             HTTCCCCSEEEECCCBTTBG
T ss_pred             cCCCCcccEEEEeccccccc
Confidence               47999999999 99973

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=97.58  E-value=2.6e-05  Score=55.20  Aligned_cols=34  Identities=12%  Similarity=0.115  Sum_probs=31.0

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..+..+++.+.+|+++|+++.
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~   50 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVI   50 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHH
T ss_pred             CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHH
Confidence            6779999999999999999988779999999984

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=97.57  E-value=1.4e-05  Score=64.12  Aligned_cols=58  Identities=21%  Similarity=0.097  Sum_probs=43.3

Q ss_pred             HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcC---CceEEccCCccceeccccCCCch
Q 032395           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~g---a~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      ..++..+......-++.+|||+|||+|...+.++..+   .+|+++|+++.  .++.++.|+.
T Consensus       189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~--~i~~a~~n~~  249 (354)
T 3tma_A          189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEK--RLGLAREAAL  249 (354)
T ss_dssp             HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHH--HHHHHHHHHH
Confidence            3466666555444467899999999999999998865   69999999994  5555555543

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.56  E-value=1.7e-05  Score=58.90  Aligned_cols=36  Identities=14%  Similarity=0.170  Sum_probs=30.6

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCC-------ceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGS-------NVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga-------~Vv~tD~~~~  103 (141)
                      .-++.+|||+|||+|..++.+++...       +|+++|.++.
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~  120 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKD  120 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHH
Confidence            33678999999999999998887643       9999999984

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=97.55  E-value=4.8e-05  Score=58.79  Aligned_cols=36  Identities=28%  Similarity=0.371  Sum_probs=31.3

Q ss_pred             ccccccEEEecCCCCCchhhhhhc---CCceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~  103 (141)
                      ..++++|||+|||+|..++.+++.   +++|+++|+++.
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~   58 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGET   58 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHH
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHH
Confidence            346789999999999999988876   569999999984

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=97.54  E-value=1.7e-05  Score=59.05  Aligned_cols=33  Identities=30%  Similarity=0.408  Sum_probs=29.7

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..++.+++. .+|+++|.++.
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~   65 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH-YEVTGVDLSEE   65 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHH
T ss_pred             CCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHH
Confidence            4689999999999999988887 89999999984

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=97.54  E-value=6.7e-06  Score=65.81  Aligned_cols=42  Identities=21%  Similarity=0.302  Sum_probs=33.5

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCC
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      .+.+|||+|||+|..++.+++.+  .+|+++|.++.  .++.++.|
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~--~l~~a~~~  239 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAP--AVEASRAT  239 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHH--HHHHHHHH
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHH
Confidence            46799999999999999998876  38999999984  44444443

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=97.54  E-value=1e-05  Score=62.86  Aligned_cols=34  Identities=21%  Similarity=0.190  Sum_probs=30.0

Q ss_pred             ccccEEEecCCCCCchhhhhh---cCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAK---VGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~---~ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..++.+++   .+.+|+++|+++.
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~   72 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSAT   72 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHH
Confidence            678999999999999998884   4569999999984

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.53  E-value=1.5e-05  Score=63.20  Aligned_cols=46  Identities=20%  Similarity=0.125  Sum_probs=35.9

Q ss_pred             cccccccEEEecCCCCCchhhhhhc-C--CceEEccCCccceeccccCCCc
Q 032395           67 YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      ...++.+|||+|||+|..++.+++. |  .+|+++|.++.  .++.++.|+
T Consensus       102 ~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~--~~~~a~~~~  150 (336)
T 2b25_A          102 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKD--HHDLAKKNY  150 (336)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHH--HHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHH--HHHHHHHHH
Confidence            4457889999999999999998886 5  58999999984  444444443

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=97.53  E-value=1.3e-05  Score=59.78  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=29.8

Q ss_pred             ccccEEEecCCCCCchhhhhhc-C--CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.+++. |  .+|+++|.++.
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~  109 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPR  109 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHH
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHH
Confidence            5789999999999999988875 4  59999999984

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=97.52  E-value=5.6e-05  Score=56.06  Aligned_cols=34  Identities=12%  Similarity=0.033  Sum_probs=31.1

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..+..+++.+.+|+++|.++.
T Consensus        40 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~   73 (239)
T 3bxo_A           40 EASSLLDVACGTGTHLEHFTKEFGDTAGLELSED   73 (239)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHH
T ss_pred             CCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHH
Confidence            6789999999999999999988889999999884

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=97.52  E-value=9.7e-06  Score=66.93  Aligned_cols=47  Identities=6%  Similarity=-0.053  Sum_probs=38.6

Q ss_pred             ccccEEEecCCCCCchhhhhhc--CC-ceEEccCCccceeccccCCCchhhh
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIELLMTSLPPSHICS  118 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--ga-~Vv~tD~~~~~~~l~n~~~N~~~n~  118 (141)
                      ++.+|||++||+|..|+.+++.  |+ +|++.|+++  +.++.+++|+++|.
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~--~av~~~~~N~~~Ng  101 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISS--KAIEIMKENFKLNN  101 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCH--HHHHHHHHHHHHTT
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHhC
Confidence            4789999999999999998874  65 899999999  46666667766663

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=97.51  E-value=2.2e-05  Score=57.65  Aligned_cols=34  Identities=15%  Similarity=0.237  Sum_probs=30.9

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..+..+++.+.+|+++|.++.
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~   65 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPE   65 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHH
T ss_pred             CCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHH
Confidence            6789999999999999988888889999999984

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.49  E-value=2.6e-05  Score=65.14  Aligned_cols=37  Identities=19%  Similarity=0.088  Sum_probs=31.5

Q ss_pred             cccccccEEEecCCCCCchhhhhhc-CC-ceEEccCCcc
Q 032395           67 YRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNR  103 (141)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~l~~a~~-ga-~Vv~tD~~~~  103 (141)
                      ..-++.+|||+|||+|..++.+|+. ++ +|+++|+++.
T Consensus       239 ~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~  277 (433)
T 1u2z_A          239 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDD  277 (433)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHH
T ss_pred             CCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHH
Confidence            3346789999999999999998885 65 8999999984

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=97.48  E-value=2.2e-05  Score=58.88  Aligned_cols=34  Identities=12%  Similarity=0.045  Sum_probs=30.1

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..+..+++.+. +|+++|.++.
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~  127 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKH  127 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHH
T ss_pred             CCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHH
Confidence            578999999999999998887765 7999999984

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=97.48  E-value=6.6e-05  Score=56.43  Aligned_cols=35  Identities=17%  Similarity=0.083  Sum_probs=31.0

Q ss_pred             cccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~  103 (141)
                      .++.+|||+|||+|..+..+++.  +++|+++|.++.
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~   68 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDD   68 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHH
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHH
Confidence            36789999999999999988887  679999999984

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=97.47  E-value=1.9e-05  Score=60.50  Aligned_cols=35  Identities=23%  Similarity=0.215  Sum_probs=31.2

Q ss_pred             cccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      -++.+|||+|||+|..++.+++.+. +|+++|+++.
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~   98 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEV   98 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHH
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHH
Confidence            3678999999999999998888887 9999999984

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=97.47  E-value=3.3e-05  Score=59.27  Aligned_cols=35  Identities=29%  Similarity=0.367  Sum_probs=31.5

Q ss_pred             cccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .++.+|||+|||+|..+..+++.+++|+++|.++.
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~   90 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAAT   90 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHH
Confidence            36789999999999999998888889999999984

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=97.47  E-value=6.4e-05  Score=61.10  Aligned_cols=34  Identities=15%  Similarity=0.127  Sum_probs=31.5

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|.....+++.+.+|+++|.++.
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~  140 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSG  140 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHH
Confidence            5789999999999999999999999999999984

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=97.46  E-value=9.2e-05  Score=56.30  Aligned_cols=35  Identities=29%  Similarity=0.348  Sum_probs=30.6

Q ss_pred             ccccccEEEecCCCCCchhhhhhc-C--CceEEccCCc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSN  102 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~  102 (141)
                      .-++++|||+|||+|..++.+++. |  .+|+++|.++
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~   78 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIAS   78 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCc
Confidence            347789999999999999988877 4  6999999997

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.45  E-value=3.3e-05  Score=61.70  Aligned_cols=43  Identities=19%  Similarity=0.242  Sum_probs=32.1

Q ss_pred             cccccEEEecCCCCC-chhhhhh-cCCceEEccCCccceeccccCCC
Q 032395           69 FSGANVVELGAGTSL-PGLVAAK-VGSNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        69 ~~~~~vLELG~GtGl-~~l~~a~-~ga~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      -++++|||+|||+|- .++.+|+ .|++|+++|+++.  .++.++.|
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~--~l~~Ar~~  165 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPD--IAELSRKV  165 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHH--HHHHHHHH
T ss_pred             CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHH--HHHHHHHH
Confidence            367899999999875 4566666 5789999999994  45444443

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=97.44  E-value=1.8e-05  Score=60.38  Aligned_cols=34  Identities=6%  Similarity=-0.022  Sum_probs=29.3

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.+|+..  .+|+++|+++.
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~   81 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVK   81 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHH
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHH
Confidence            45689999999999999888763  48999999984

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=97.40  E-value=2e-05  Score=59.08  Aligned_cols=34  Identities=29%  Similarity=0.344  Sum_probs=29.5

Q ss_pred             ccccEEEecCCCCCchhhhhhc-C--CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.+++. |  .+|+++|+++.
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~  113 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHR  113 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHH
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHH
Confidence            5789999999999999988876 3  59999999973

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=97.40  E-value=3.1e-05  Score=61.67  Aligned_cols=42  Identities=10%  Similarity=0.060  Sum_probs=33.5

Q ss_pred             ccccEEEecCCCCCchhhhhhc--CCceEEccCCccceeccccCCC
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      ++.+|||+|||+|..++.+++.  +.+|+++|.++.  .++.++.|
T Consensus        26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~--al~~A~~~   69 (301)
T 1m6y_A           26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSE--VLRIAEEK   69 (301)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHH--HHHHHHHH
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHH--HHHHHHHH
Confidence            6789999999999999988876  369999999994  44433333

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=97.34  E-value=3.7e-05  Score=62.30  Aligned_cols=44  Identities=27%  Similarity=0.305  Sum_probs=33.9

Q ss_pred             ccccccEEEecCCCCCchhhhhhc---CCceEEccCCccceeccccCCC
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      ..++++|||+|||+|..++.+++.   +++|+++|+++.  .++.++.|
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~--~l~~a~~~  127 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDN--QLEVARKY  127 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHH--HHHHHHHT
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHH
Confidence            346789999999999999988775   349999999984  44444433

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=97.34  E-value=8.9e-05  Score=58.60  Aligned_cols=52  Identities=10%  Similarity=0.005  Sum_probs=33.7

Q ss_pred             eehhHHHHHHHHhhhc-ccccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           52 WPCSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        52 W~as~~la~~l~~~~~-~~~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      |-.+..+..|+..... .-++.+|||+|||+|......++. +++|+++|+++.
T Consensus        29 ~vks~li~~~~~~~~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~   82 (302)
T 2vdw_A           29 YVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDAD   82 (302)
T ss_dssp             HHHHHHHHHHTCTTTSSCCSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHH
T ss_pred             HHHHHHHHHHHhhhhhccCCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHH
Confidence            4455555555433111 114689999999999755544444 469999999995

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.34  E-value=0.00012  Score=58.12  Aligned_cols=46  Identities=22%  Similarity=0.169  Sum_probs=35.2

Q ss_pred             ehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccC
Q 032395           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDD  100 (141)
Q Consensus        53 ~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~  100 (141)
                      .+++.|.+.+.. ...-++++|||||||+|..+..+++. ++|+++|.
T Consensus        66 R~a~KL~~i~~~-~~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~  111 (305)
T 2p41_A           66 RGSAKLRWFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKG  111 (305)
T ss_dssp             THHHHHHHHHHT-TSSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEE
T ss_pred             cHHHHHHHHHHc-CCCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEec
Confidence            355556555544 22235789999999999999999988 68999998

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.30  E-value=2.6e-05  Score=57.87  Aligned_cols=35  Identities=23%  Similarity=0.432  Sum_probs=30.1

Q ss_pred             cccccEEEecCCCCCchhhhhhc-C--CceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~  103 (141)
                      -++.+|||+|||+|..+..+++. +  .+|+++|+++.
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~  113 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKE  113 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHH
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHH
Confidence            36789999999999999988875 4  48999999984

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=97.29  E-value=2.7e-05  Score=61.65  Aligned_cols=45  Identities=11%  Similarity=-0.048  Sum_probs=35.5

Q ss_pred             cccEEEecCCCCCchhhhhhc-CC-ceEEccCCccceeccccCCCchhh
Q 032395           71 GANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~-ga-~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      -.+|||||||+|.+++.++.. +. +|++.|+++.  .++.++.|...|
T Consensus       133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~--~le~a~~~l~~~  179 (281)
T 3lcv_B          133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDAR--LVGFVDEALTRL  179 (281)
T ss_dssp             CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHH--HHHHHHHHHHHT
T ss_pred             CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHH--HHHHHHHHHHhc
Confidence            459999999999999988876 33 9999999994  566555665444

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.28  E-value=3.9e-05  Score=59.88  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=30.5

Q ss_pred             ccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        72 ~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .+|||+|||+|..++.+++.|++|+++|.++.
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~  121 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPV  121 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHH
T ss_pred             CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHH
Confidence            79999999999999999999999999999984

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.27  E-value=6.3e-05  Score=59.16  Aligned_cols=55  Identities=24%  Similarity=0.115  Sum_probs=41.4

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCc
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      .|.+.+..... .++..|||++||+|-+++.+++.|.+++++|+++.  .++.++.|+
T Consensus       223 ~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~--~~~~a~~r~  277 (297)
T 2zig_A          223 ELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPR--YAQLAKERF  277 (297)
T ss_dssp             HHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHH--HHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHH--HHHHHHHHH
Confidence            44444444322 36789999999999999999999999999999994  455444443

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=97.25  E-value=4e-05  Score=59.93  Aligned_cols=44  Identities=16%  Similarity=0.015  Sum_probs=33.8

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchh
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      ...+|||||||+|.+++..+ .+.+++++|+++.  .++.++.|...
T Consensus       105 ~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~--~i~~ar~~~~~  148 (253)
T 3frh_A          105 TPRRVLDIACGLNPLALYER-GIASVWGCDIHQG--LGDVITPFARE  148 (253)
T ss_dssp             CCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHH--HHHHHHHHHHH
T ss_pred             CCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHH--HHHHHHHHHHh
Confidence            45699999999999999877 4449999999994  55555555433

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.23  E-value=6.2e-05  Score=56.16  Aligned_cols=43  Identities=14%  Similarity=0.268  Sum_probs=33.1

Q ss_pred             cccccEEEecCCCCCchhhhhh-cC-------CceEEccCCccceeccccCCC
Q 032395           69 FSGANVVELGAGTSLPGLVAAK-VG-------SNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~-~g-------a~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      -++.+|||+|||+|..+..+++ .+       .+|+++|.++.  .++.++.|
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~--~~~~a~~~  133 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAE--LVRRSKAN  133 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHH--HHHHHHHH
T ss_pred             CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHH--HHHHHHHH
Confidence            3678999999999999998877 44       48999999984  44444333

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=97.23  E-value=0.0002  Score=57.85  Aligned_cols=51  Identities=6%  Similarity=-0.053  Sum_probs=39.7

Q ss_pred             ehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCcc
Q 032395           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNR  103 (141)
Q Consensus        53 ~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~  103 (141)
                      -+...+++++.......++.+|||+|||+|..++.+++.   +.+|+++|+++.
T Consensus        22 ~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~   75 (421)
T 2ih2_A           22 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPK   75 (421)
T ss_dssp             CCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTT
T ss_pred             eCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHH
Confidence            345667787777544345679999999999999988874   359999999984

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.20  E-value=0.00018  Score=54.64  Aligned_cols=34  Identities=18%  Similarity=0.131  Sum_probs=30.3

Q ss_pred             ccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..+..+++.  +++|+++|.++.
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~  120 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKV  120 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHH
Confidence            5789999999999999988876  679999999984

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=97.19  E-value=0.00027  Score=59.11  Aligned_cols=36  Identities=17%  Similarity=0.129  Sum_probs=30.4

Q ss_pred             ccccccEEEecCCCCCchhhhhh-cCC-ceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~-~ga-~Vv~tD~~~~  103 (141)
                      .-++.+|||||||+|.+.+.+|+ .++ +|+++|+++.
T Consensus       171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~  208 (438)
T 3uwp_A          171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADI  208 (438)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHH
Confidence            34678999999999999998875 566 5999999984

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=97.15  E-value=0.00035  Score=54.51  Aligned_cols=52  Identities=25%  Similarity=0.318  Sum_probs=35.1

Q ss_pred             eehhHHHHHHHHhhhcc-cccccEEEecCCCCCchhhhhhcC-CceEEccCCcc
Q 032395           52 WPCSVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNR  103 (141)
Q Consensus        52 W~as~~la~~l~~~~~~-~~~~~vLELG~GtGl~~l~~a~~g-a~Vv~tD~~~~  103 (141)
                      |-....+..++...... -++.+|||+|||+|..+..+++.+ .+|+++|+++.
T Consensus        15 ~~k~~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~   68 (313)
T 3bgv_A           15 WMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADV   68 (313)
T ss_dssp             HHHHHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHH
T ss_pred             HHHHHHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHH
Confidence            33444444444332222 256799999999999998887654 49999999984

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=97.13  E-value=0.00027  Score=63.71  Aligned_cols=45  Identities=18%  Similarity=0.166  Sum_probs=36.3

Q ss_pred             HHHHHhhhcccccccEEEecCCCCCchhhhhhcC---CceEEccCCcc
Q 032395           59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNR  103 (141)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~g---a~Vv~tD~~~~  103 (141)
                      .+++.......++++|||+|||+|..++.+++.+   ++|+++|+++.
T Consensus       710 le~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~e  757 (950)
T 3htx_A          710 VEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPK  757 (950)
T ss_dssp             HHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHH
T ss_pred             HHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHH
Confidence            3444444334478899999999999999999987   69999999994

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=97.13  E-value=5.8e-05  Score=58.90  Aligned_cols=34  Identities=12%  Similarity=0.109  Sum_probs=30.3

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..++.+++.+. +|+++|+++.
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~  109 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDED  109 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHH
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHH
Confidence            568999999999999998888765 9999999984

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=97.09  E-value=6.3e-05  Score=58.71  Aligned_cols=34  Identities=18%  Similarity=0.116  Sum_probs=28.4

Q ss_pred             ccccEEEecCCCCCchhhhh--hc-CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAA--KV-GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a--~~-ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..++.++  .. +.+|+++|+++.
T Consensus       118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~  154 (305)
T 3ocj_A          118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPE  154 (305)
T ss_dssp             TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHH
Confidence            57899999999999998874  33 459999999984

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=97.08  E-value=7.2e-05  Score=54.73  Aligned_cols=31  Identities=23%  Similarity=0.176  Sum_probs=27.3

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..+..+   +. +|+++|.++.
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~   67 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEA   67 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHH
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHH
Confidence            7789999999999887766   77 9999999984

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=97.07  E-value=8e-05  Score=58.05  Aligned_cols=42  Identities=19%  Similarity=0.096  Sum_probs=33.5

Q ss_pred             ccccEEEecCCCCCchhhhhhc-CC-ceEEccCCccceeccccCCC
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-ga-~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      +.++|||+|||+|.++..+++. +. +|++.|+++.  +++.+++|
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~--~v~~ar~~  118 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGK--VIEYSKKF  118 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHH--HHHHHHHH
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHH--HHHHHHHH
Confidence            5689999999999999988887 54 9999999984  44444443

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.05  E-value=7e-05  Score=58.81  Aligned_cols=42  Identities=19%  Similarity=0.087  Sum_probs=31.2

Q ss_pred             cccEEEecCCCCC----chhhhhhc-C-----CceEEccCCccceeccccCCCc
Q 032395           71 GANVVELGAGTSL----PGLVAAKV-G-----SNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        71 ~~~vLELG~GtGl----~~l~~a~~-g-----a~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      ..+||++|||||-    +++.++.. +     .+|++||+++.  +|+.++.|+
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~--~L~~Ar~~~  157 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTE--VLEKARSGI  157 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHH--HHHHHHHTE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHH--HHHHHHhcC
Confidence            4689999999998    66666554 3     48999999994  566555543

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=97.04  E-value=0.00011  Score=60.22  Aligned_cols=59  Identities=19%  Similarity=0.067  Sum_probs=44.3

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCCchhhhhhcC----------------------------------------CceE
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG----------------------------------------SNVT   96 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~g----------------------------------------a~Vv   96 (141)
                      .||..|......-++.+|||.+||+|-+.+.+|..+                                        .+|+
T Consensus       182 ~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~  261 (385)
T 3ldu_A          182 TLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY  261 (385)
T ss_dssp             HHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred             HHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence            466666665444467899999999999999887764                                        3599


Q ss_pred             EccCCccceeccccCCCchhh
Q 032395           97 LTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        97 ~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ++|+++  ..++.++.|+..+
T Consensus       262 GvDid~--~ai~~Ar~Na~~~  280 (385)
T 3ldu_A          262 GYDIDE--ESIDIARENAEIA  280 (385)
T ss_dssp             EEESCH--HHHHHHHHHHHHH
T ss_pred             EEECCH--HHHHHHHHHHHHc
Confidence            999999  4666666666544

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=97.03  E-value=8.6e-05  Score=59.25  Aligned_cols=34  Identities=18%  Similarity=0.168  Sum_probs=29.8

Q ss_pred             ccccEEEecCCCCCchhhhhhc-C-CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-g-a~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..++.+++. + .+|+++|+++.
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~  151 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDET  151 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHH
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHH
Confidence            5689999999999999988887 3 49999999984

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=96.99  E-value=0.00013  Score=59.11  Aligned_cols=45  Identities=16%  Similarity=0.235  Sum_probs=35.6

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCC--ceEEccCCccceeccccCCCch
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      ..++++|||+| |+|..++.+++.++  +|+++|+++.  .++.++.|+.
T Consensus       170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~--~l~~a~~~~~  216 (373)
T 2qm3_A          170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDER--LTKFIEKAAN  216 (373)
T ss_dssp             CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHH--HHHHHHHHHH
T ss_pred             CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHHH
Confidence            34688999999 99999999998864  8999999983  4555555543

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=96.98  E-value=0.0001  Score=58.09  Aligned_cols=42  Identities=12%  Similarity=0.063  Sum_probs=33.2

Q ss_pred             ccccEEEecCCCCCchhhhhhc-C-CceEEccCCccceeccccCCC
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-g-a~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      ++++|||+|||+|..+..+++. + .+|+++|+++.  .++.++.|
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~--~~~~a~~~  133 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGL--VIEAARKY  133 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHH--HHHHHHHH
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHH--HHHHHHHH
Confidence            4679999999999999988887 4 49999999984  44444333

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=96.96  E-value=0.00012  Score=58.96  Aligned_cols=42  Identities=12%  Similarity=0.085  Sum_probs=33.2

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCC
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      +.++|||+|||+|..++.+++..  .+|+++|+++.  .++.+++|
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~--~l~~Ar~~  163 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKM--VVDVSKQF  163 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHH--HHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHH--HHHHHHHH
Confidence            46799999999999999888863  49999999984  44444444

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=96.95  E-value=0.00012  Score=56.66  Aligned_cols=34  Identities=9%  Similarity=0.088  Sum_probs=29.4

Q ss_pred             ccccEEEecCCCCCchhhhhhc--C-CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--G-SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--g-a~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.++..  + .+|+++|.++.
T Consensus        83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~  119 (274)
T 3ajd_A           83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKT  119 (274)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHH
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHH
Confidence            6789999999999999887763  4 49999999984

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=96.95  E-value=0.00039  Score=53.32  Aligned_cols=55  Identities=18%  Similarity=0.111  Sum_probs=39.0

Q ss_pred             eeeeehhHH-HHHHHHhhhc---ccccccEEEecCCCCCchhhhhhc-C--CceEEccCCcc
Q 032395           49 LFVWPCSVI-LAEYVWQQRY---RFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNR  103 (141)
Q Consensus        49 ~~~W~as~~-la~~l~~~~~---~~~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~  103 (141)
                      .+.|..-.. ++..+...-.   .-+|.+|||+|||+|..+..++.. +  .+|++.|+++.
T Consensus        51 yr~w~~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~  112 (232)
T 3id6_C           51 YREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPR  112 (232)
T ss_dssp             EEECCTTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHH
T ss_pred             hhhhchHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHH
Confidence            566654332 4555544322   336889999999999998888765 3  29999999985

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=96.94  E-value=0.00029  Score=54.72  Aligned_cols=43  Identities=7%  Similarity=-0.038  Sum_probs=34.4

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      ..++|||+|||+|..+..+++.+.+|+++|+++  ++++.++++.
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~--~~i~~ar~~~  114 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADE--KILDSFISFF  114 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCH--HHHGGGTTTS
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCH--HHHHHHHHHH
Confidence            457999999999999887766667999999998  4566666654

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=96.93  E-value=0.00019  Score=56.84  Aligned_cols=34  Identities=15%  Similarity=0.119  Sum_probs=29.4

Q ss_pred             ccccEEEecCCCCCchhhhhhc---CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.++..   +.+|+++|+++.
T Consensus       118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~  154 (315)
T 1ixk_A          118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDEN  154 (315)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHH
Confidence            6789999999999999988864   248999999984

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=96.93  E-value=0.00061  Score=49.88  Aligned_cols=31  Identities=16%  Similarity=0.121  Sum_probs=26.3

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..+..+   +.+|+++|.++.
T Consensus        67 ~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~   97 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSI---RNPVHCFDLASL   97 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHC---CSCEEEEESSCS
T ss_pred             CCCeEEEECCcCCHHHHHh---hccEEEEeCCCC
Confidence            5689999999999987766   369999999873

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=96.92  E-value=0.00017  Score=59.31  Aligned_cols=59  Identities=15%  Similarity=0.072  Sum_probs=42.6

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC----------------------------------------ceE
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS----------------------------------------NVT   96 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga----------------------------------------~Vv   96 (141)
                      .||..|......-.+..|||.+||+|-+.+.+|..++                                        +|+
T Consensus       188 ~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~  267 (393)
T 3k0b_A          188 TMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII  267 (393)
T ss_dssp             HHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred             HHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence            4566555544444678999999999999998887654                                        399


Q ss_pred             EccCCccceeccccCCCchhh
Q 032395           97 LTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        97 ~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ++|+++.  .++.++.|+..+
T Consensus       268 GvDid~~--al~~Ar~Na~~~  286 (393)
T 3k0b_A          268 GGDIDAR--LIEIAKQNAVEA  286 (393)
T ss_dssp             EEESCHH--HHHHHHHHHHHT
T ss_pred             EEECCHH--HHHHHHHHHHHc
Confidence            9999994  566555665443

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=96.88  E-value=0.00013  Score=57.72  Aligned_cols=42  Identities=14%  Similarity=0.048  Sum_probs=33.2

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCC
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      ++++|||+|||+|..++.+++..  .+|+++|+++.  .++.+++|
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~--~i~~ar~~  138 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDED--VIQVSKKF  138 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHH--HHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHH--HHHHHHHH
Confidence            56899999999999999988874  49999999984  44433333

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=96.84  E-value=0.00015  Score=57.47  Aligned_cols=34  Identities=15%  Similarity=0.101  Sum_probs=29.7

Q ss_pred             ccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~  103 (141)
                      +.++|||+|||+|..+..+++.  +.+|+++|+++.
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~  112 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGE  112 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHH
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHH
Confidence            5679999999999999988886  349999999984

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=96.84  E-value=0.00015  Score=57.13  Aligned_cols=34  Identities=18%  Similarity=0.172  Sum_probs=29.6

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..+..+++..  .+|+++|+++.
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~  130 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGE  130 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHH
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHH
Confidence            56799999999999999888763  49999999984

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=96.78  E-value=0.00021  Score=56.97  Aligned_cols=34  Identities=18%  Similarity=0.098  Sum_probs=29.7

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      +.++|||+|||+|..++.+++..  .+|+++|+++.
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~  143 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEM  143 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHH
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHH
Confidence            46799999999999999888763  49999999984

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=96.77  E-value=0.00027  Score=57.98  Aligned_cols=60  Identities=13%  Similarity=0.096  Sum_probs=44.1

Q ss_pred             HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC----------------------------------------ce
Q 032395           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS----------------------------------------NV   95 (141)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga----------------------------------------~V   95 (141)
                      ..||..|......-.+..+||.+||+|-+.+.+|..++                                        +|
T Consensus       180 e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v  259 (384)
T 3ldg_A          180 ENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDI  259 (384)
T ss_dssp             HHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCE
T ss_pred             HHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceE
Confidence            35666666554444678999999999999998886544                                        39


Q ss_pred             EEccCCccceeccccCCCchhh
Q 032395           96 TLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        96 v~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      +++|+++  ..++.++.|+..+
T Consensus       260 ~GvDid~--~al~~Ar~Na~~~  279 (384)
T 3ldg_A          260 SGFDFDG--RMVEIARKNAREV  279 (384)
T ss_dssp             EEEESCH--HHHHHHHHHHHHT
T ss_pred             EEEECCH--HHHHHHHHHHHHc
Confidence            9999999  4566666665544

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=96.76  E-value=0.00041  Score=55.31  Aligned_cols=32  Identities=13%  Similarity=0.079  Sum_probs=27.8

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSN  102 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~  102 (141)
                      ++++|||+|||+|..+..+++..  .+++++|+ +
T Consensus       190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~  223 (359)
T 1x19_A          190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-P  223 (359)
T ss_dssp             TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-G
T ss_pred             CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-H
Confidence            56799999999999999888763  49999999 6

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=96.76  E-value=0.00031  Score=54.84  Aligned_cols=34  Identities=18%  Similarity=0.153  Sum_probs=29.9

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..+..+++..  .+|+++|+++.
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~  113 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDET  113 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHH
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHH
Confidence            56899999999999999888874  49999999984

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=96.64  E-value=0.00032  Score=58.86  Aligned_cols=57  Identities=12%  Similarity=0.019  Sum_probs=38.9

Q ss_pred             ehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-C--CceEEccCCccceeccccCCCch
Q 032395           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        53 ~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      +++..++..+.    .-++.+|||+|||+|..++.+|.. +  .+|++.|+++.  .++.++.|+.
T Consensus        92 ~ss~l~~~~L~----~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~--rl~~~~~n~~  151 (456)
T 3m4x_A           92 PSAMIVGTAAA----AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPK--RAKILSENIE  151 (456)
T ss_dssp             TTTHHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHH--HHHHHHHHHH
T ss_pred             HHHHHHHHHcC----CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHH
Confidence            34444444442    236789999999999999988764 2  48999999984  4444444443

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=96.63  E-value=0.0003  Score=59.15  Aligned_cols=44  Identities=16%  Similarity=0.126  Sum_probs=34.1

Q ss_pred             ccccEEEecCCCCCchhhhhhc-C--CceEEccCCccceeccccCCCch
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      ++.+|||+|||+|..++.+|.. +  .+|++.|+++.  .++.++.|+.
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~--~l~~a~~n~~  147 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGK--RVRGLLENVE  147 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHH--HHHHHHHHHH
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHHH
Confidence            6789999999999999988764 2  48999999984  4554445443

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=96.49  E-value=0.00053  Score=54.44  Aligned_cols=31  Identities=16%  Similarity=0.204  Sum_probs=26.5

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccC
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDD  100 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~  100 (141)
                      ++++|||+|||+|..++.+++..  .+++++|+
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~  215 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM  215 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC
Confidence            46799999999999999888765  38889998

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=96.46  E-value=0.00048  Score=54.86  Aligned_cols=32  Identities=19%  Similarity=0.088  Sum_probs=27.5

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSN  102 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~  102 (141)
                      ++.+|||+|||+|..++.+++..  .+++++|+ +
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~  215 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-A  215 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-H
Confidence            46799999999999999888764  48999999 5

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=96.45  E-value=0.0007  Score=55.73  Aligned_cols=43  Identities=16%  Similarity=0.143  Sum_probs=33.7

Q ss_pred             cccccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCC
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      -++.+|||+|||+|..++.++...  .+|++.|.++.  .++.++.|
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~--~l~~~~~~  289 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQ--RLSRVYDN  289 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTT--THHHHHHH
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHH--HHHHHHHH
Confidence            367899999999999999888765  49999999984  34443343

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.44  E-value=0.00079  Score=51.82  Aligned_cols=47  Identities=21%  Similarity=0.166  Sum_probs=37.5

Q ss_pred             HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ..|.+.+..... -+|..|||..||+|-.+++++++|.+++++|+++.
T Consensus       199 ~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~  245 (260)
T 1g60_A          199 RDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAE  245 (260)
T ss_dssp             HHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHH
T ss_pred             HHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHH
Confidence            345554444322 36789999999999999999999999999999984

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=96.44  E-value=0.00098  Score=49.15  Aligned_cols=30  Identities=23%  Similarity=0.191  Sum_probs=25.7

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..+..+++.    +++|.++.
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~   76 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK----IGVEPSER   76 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC----EEEESCHH
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH----hccCCCHH
Confidence            4889999999999998877665    89999874

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=96.39  E-value=0.00052  Score=54.64  Aligned_cols=42  Identities=12%  Similarity=0.056  Sum_probs=32.1

Q ss_pred             ccccEEEecCCCCCchhhhhhcC-------CceEEccCCccceeccccCCC
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG-------SNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g-------a~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      ++.+|||+|||+|...+.+++..       .+|+++|+++.  .++.++.|
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~--~~~~a~~n  178 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDL--LISLALVG  178 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHH--HHHHHHHH
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHH--HHHHHHHH
Confidence            56799999999999998887653       58999999984  44444444

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=96.32  E-value=0.0014  Score=51.45  Aligned_cols=32  Identities=16%  Similarity=0.283  Sum_probs=27.2

Q ss_pred             ccccEEEecCCCCCchhhhhhc--CCceEEccCCc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSN  102 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~  102 (141)
                      ++++|||+|||+|..++.+++.  +.+++++|+ +
T Consensus       167 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~  200 (334)
T 2ip2_A          167 RGRSFVDVGGGSGELTKAILQAEPSARGVMLDR-E  200 (334)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-T
T ss_pred             CCCEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-H
Confidence            3489999999999999888776  348999999 5

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=96.32  E-value=0.00068  Score=53.91  Aligned_cols=43  Identities=14%  Similarity=0.087  Sum_probs=32.9

Q ss_pred             ccccEEEecCCCCCchhhhhhc--C-CceEEccCCccceeccccCCCc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--G-SNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--g-a~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      ++.+|||+|||+|-.++.++..  + .+|++.|.++.  .++.++.|+
T Consensus       102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~--~l~~~~~n~  147 (309)
T 2b9e_A          102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAK--RLASMATLL  147 (309)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHH--HHHHHHHHH
T ss_pred             CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHH
Confidence            6789999999999999988764  2 49999999984  344333433

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=96.29  E-value=0.0031  Score=49.20  Aligned_cols=33  Identities=18%  Similarity=0.247  Sum_probs=28.5

Q ss_pred             ccccEEEecCCCCCchhhhhhc--CCceEEccCCc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSN  102 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~  102 (141)
                      ++.+|||+|||+|..++.+++.  +.+++++|++.
T Consensus       165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~  199 (335)
T 2r3s_A          165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWAS  199 (335)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHH
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHH
Confidence            5679999999999999888876  45999999984

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=96.26  E-value=0.00099  Score=56.05  Aligned_cols=43  Identities=7%  Similarity=-0.016  Sum_probs=33.2

Q ss_pred             ccccEEEecCCCCCchhhhhhc-C--CceEEccCCccceeccccCCCc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      ++.+|||+|||+|..++.+|.. +  .+|++.|+++.  .++.++.|+
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~--~l~~~~~n~  162 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSAS--RVKVLHANI  162 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHH--HHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHH
Confidence            5789999999999999988764 2  48999999984  444444443

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=96.21  E-value=0.0018  Score=51.45  Aligned_cols=39  Identities=13%  Similarity=0.219  Sum_probs=29.9

Q ss_pred             ccccEEEecCCCCCchhhhhhc--CCceEEccCCccceeccccC
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIELLMTSL  111 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~l~n~~  111 (141)
                      .+.+|||+|||+|..+..+++.  +.+++++|+ +  +.++.++
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~--~~~~~a~  228 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-P--QVVENLS  228 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H--HHHTTCC
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-H--HHHhhcc
Confidence            3479999999999999988775  348999999 5  2444443

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=96.18  E-value=0.00072  Score=54.22  Aligned_cols=33  Identities=15%  Similarity=0.192  Sum_probs=27.6

Q ss_pred             ccccEEEecCCCCCchhhhhhc--CCceEEccCCc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSN  102 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~  102 (141)
                      ..++|||+|||+|..++.+++.  +.+++++|+..
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~  213 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQ  213 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHH
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHH
Confidence            4579999999999999988775  34899999943

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=96.09  E-value=0.00064  Score=54.59  Aligned_cols=32  Identities=19%  Similarity=0.178  Sum_probs=27.9

Q ss_pred             ccEEEecCCCCCchhhhhh-c-CCceEEccCCcc
Q 032395           72 ANVVELGAGTSLPGLVAAK-V-GSNVTLTDDSNR  103 (141)
Q Consensus        72 ~~vLELG~GtGl~~l~~a~-~-ga~Vv~tD~~~~  103 (141)
                      .+||+||||+|.++..+++ . +.+|+++|+++.
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~  124 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAE  124 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHH
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHH
Confidence            3999999999999998887 3 459999999994

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=96.06  E-value=0.0054  Score=47.47  Aligned_cols=33  Identities=24%  Similarity=0.252  Sum_probs=26.8

Q ss_pred             cccEEEecCCC---CCchhhhhhc--CCceEEccCCcc
Q 032395           71 GANVVELGAGT---SLPGLVAAKV--GSNVTLTDDSNR  103 (141)
Q Consensus        71 ~~~vLELG~Gt---Gl~~l~~a~~--ga~Vv~tD~~~~  103 (141)
                      ..+|||||||+   |.....+.+.  +++|+++|+++.
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~  115 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPM  115 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHH
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChH
Confidence            36999999999   9877666554  469999999984

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=96.04  E-value=0.0017  Score=52.19  Aligned_cols=31  Identities=19%  Similarity=0.158  Sum_probs=26.8

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccC
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDD  100 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~  100 (141)
                      ++.+|||+|||+|..++.+++..  .+++++|+
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~  234 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER  234 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC
Confidence            45799999999999999888763  48999999

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=96.01  E-value=0.0037  Score=49.35  Aligned_cols=32  Identities=13%  Similarity=0.044  Sum_probs=27.3

Q ss_pred             cccEEEecCCCCCchhhhhhcC--CceEEccCCc
Q 032395           71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSN  102 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~  102 (141)
                      +++|||+|||+|..+..+++..  .+++++|+..
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~  213 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPT  213 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHH
Confidence            6899999999999998887763  4899999944

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=95.99  E-value=0.0016  Score=53.98  Aligned_cols=34  Identities=21%  Similarity=0.203  Sum_probs=29.3

Q ss_pred             ccccEEEecCCCCCchhhhhhc--C-CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV--G-SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~--g-a~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.++..  + .+|+++|.++.
T Consensus       259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~  295 (450)
T 2yxl_A          259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKM  295 (450)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHH
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHH
Confidence            6789999999999999988764  3 48999999984

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=95.96  E-value=0.0026  Score=49.09  Aligned_cols=34  Identities=21%  Similarity=0.355  Sum_probs=23.7

Q ss_pred             ccccEEEecCCCCCchhhh-----hhc-CCce--EEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVA-----AKV-GSNV--TLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~-----a~~-ga~V--v~tD~~~~  103 (141)
                      ++.+|||+|||+|.+++.+     ++. +..|  +++|.++.
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~   93 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAE   93 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHH
Confidence            4579999999999665422     221 2344  99999985

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=95.95  E-value=0.0014  Score=54.07  Aligned_cols=50  Identities=16%  Similarity=0.013  Sum_probs=37.7

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc---------------CCceEEccCCcc
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---------------GSNVTLTDDSNR  103 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---------------ga~Vv~tD~~~~  103 (141)
                      +...++++|........+.+|+|.|||+|...+.+++.               ..++++.|+++.
T Consensus       155 TP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~  219 (445)
T 2okc_A          155 TPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPL  219 (445)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHH
T ss_pred             CcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHH
Confidence            44456777766544446789999999999998877653               358999999984

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=95.88  E-value=0.0048  Score=51.36  Aligned_cols=35  Identities=20%  Similarity=0.135  Sum_probs=28.0

Q ss_pred             ccccEEEecCC------CCCchhhhhhc---CCceEEccCCccc
Q 032395           70 SGANVVELGAG------TSLPGLVAAKV---GSNVTLTDDSNRI  104 (141)
Q Consensus        70 ~~~~vLELG~G------tGl~~l~~a~~---ga~Vv~tD~~~~~  104 (141)
                      ++.+|||+|||      +|..++.+++.   +++|+++|+++.+
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m  259 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKS  259 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCG
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHH
Confidence            56799999999      77777766553   4699999999964

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=95.88  E-value=0.006  Score=48.81  Aligned_cols=32  Identities=13%  Similarity=0.006  Sum_probs=26.6

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC--ceEEccCC
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDS  101 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~  101 (141)
                      ++.+|||+|||+|..+..+++...  +++++|+.
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~  242 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLP  242 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChH
Confidence            357999999999999998887654  78888993

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=95.83  E-value=0.0062  Score=48.91  Aligned_cols=32  Identities=19%  Similarity=0.139  Sum_probs=26.7

Q ss_pred             cccEEEecCCCCCchhhhhhcC--CceEEccCCc
Q 032395           71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSN  102 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~  102 (141)
                      ..+|||+|||+|..++.+++..  .++++.|+..
T Consensus       204 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~  237 (368)
T 3reo_A          204 LTTIVDVGGGTGAVASMIVAKYPSINAINFDLPH  237 (368)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHH
Confidence            4799999999999999887753  3899999943

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=95.75  E-value=0.0049  Score=48.90  Aligned_cols=34  Identities=18%  Similarity=0.174  Sum_probs=28.0

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC--ceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..+..+++...  ++++.|+++.
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~  219 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEV  219 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHH
T ss_pred             CCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHH
Confidence            467999999999999998877543  8899999654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=95.71  E-value=0.0022  Score=56.29  Aligned_cols=59  Identities=14%  Similarity=0.126  Sum_probs=43.6

Q ss_pred             HHHHHHHhhhcccccccEEEecCCCCCchhhhhhcC--------------------------------------------
Q 032395           57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--------------------------------------------   92 (141)
Q Consensus        57 ~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~g--------------------------------------------   92 (141)
                      .||..|......-.+..+||.+||+|-+.|.+|..+                                            
T Consensus       177 ~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~  256 (703)
T 3v97_A          177 TLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS  256 (703)
T ss_dssp             HHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence            566666665444467899999999999999877653                                            


Q ss_pred             CceEEccCCccceeccccCCCchhh
Q 032395           93 SNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        93 a~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      .+|+++|+++  ..++.++.|+..+
T Consensus       257 ~~i~G~Did~--~av~~A~~N~~~a  279 (703)
T 3v97_A          257 SHFYGSDSDA--RVIQRARTNARLA  279 (703)
T ss_dssp             CCEEEEESCH--HHHHHHHHHHHHT
T ss_pred             ccEEEEECCH--HHHHHHHHHHHHc
Confidence            3799999999  4666666665544

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=95.52  E-value=0.0099  Score=47.68  Aligned_cols=32  Identities=16%  Similarity=0.033  Sum_probs=26.7

Q ss_pred             cccEEEecCCCCCchhhhhhcC--CceEEccCCc
Q 032395           71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSN  102 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~  102 (141)
                      ..+|||+|||+|..+..+++..  .++++.|+.+
T Consensus       202 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~  235 (364)
T 3p9c_A          202 LGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPH  235 (364)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHH
Confidence            4799999999999998887753  3899999944

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=95.36  E-value=0.0054  Score=48.77  Aligned_cols=33  Identities=18%  Similarity=0.210  Sum_probs=27.3

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSN  102 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~  102 (141)
                      ...+|||+|||+|..+..+++..  .++++.|++.
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~  227 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQ  227 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHH
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHH
Confidence            34799999999999999888764  3889999954

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=95.15  E-value=0.0082  Score=47.08  Aligned_cols=31  Identities=19%  Similarity=0.082  Sum_probs=26.0

Q ss_pred             cccEEEecCCCCCchhhhhhcC--CceEEccCCc
Q 032395           71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSN  102 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~  102 (141)
                      ..+|||+|||+|..++.+++..  .+++++|+ +
T Consensus       170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~  202 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-Q  202 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H
T ss_pred             CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-H
Confidence            4699999999999998777643  48999999 5

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=95.13  E-value=0.014  Score=46.17  Aligned_cols=54  Identities=24%  Similarity=0.073  Sum_probs=42.2

Q ss_pred             ceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhh-cCC-ceEEccCCc
Q 032395           48 GLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSN  102 (141)
Q Consensus        48 g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~-~ga-~Vv~tD~~~  102 (141)
                      |...=.|++-|.+...+. ...++.+|||||||.|-.+-++++ .++ .|++.|+..
T Consensus        69 g~YrSRAAfKL~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~  124 (282)
T 3gcz_A           69 GIAVSRGSAKLRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGV  124 (282)
T ss_dssp             SBCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             CCEecHHHHHHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEecc
Confidence            555567888888888775 344677999999999999998885 565 788888864

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=94.87  E-value=0.011  Score=46.75  Aligned_cols=33  Identities=15%  Similarity=0.220  Sum_probs=23.8

Q ss_pred             ccccEEEecCCC------CCchhhhhhcC--CceEEccCCcc
Q 032395           70 SGANVVELGAGT------SLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~Gt------Gl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      ++.+|||||||+      |- .+++...+  ++|+++|+++.
T Consensus        63 ~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~  103 (290)
T 2xyq_A           63 YNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF  103 (290)
T ss_dssp             TTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC
T ss_pred             CCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC
Confidence            678999999955      44 23333344  59999999984

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=94.82  E-value=0.015  Score=47.76  Aligned_cols=34  Identities=24%  Similarity=0.086  Sum_probs=31.5

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      +|++||||||.+|-.+-.+++.|++|+++|..+.
T Consensus       211 ~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l  244 (375)
T 4auk_A          211 NGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPM  244 (375)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhc
Confidence            6899999999999999999999999999998763

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=94.79  E-value=0.019  Score=45.32  Aligned_cols=55  Identities=20%  Similarity=0.074  Sum_probs=41.0

Q ss_pred             ccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-CC-ceEEccCC
Q 032395           46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDS  101 (141)
Q Consensus        46 ~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-ga-~Vv~tD~~  101 (141)
                      .+|...=.|++-|.+...+ ...-.+.+|||||||+|-.+-+++.. ++ .|++.|+.
T Consensus        51 ~~~~YrSRaA~KL~ei~ek-~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVG  107 (277)
T 3evf_A           51 DTGVAVSRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLG  107 (277)
T ss_dssp             SSCBCSSTHHHHHHHHHHT-TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCC
T ss_pred             cCCCccccHHHHHHHHHHh-CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEe
Confidence            3466666799999998887 33335679999999999999988765 44 66666655

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=94.58  E-value=0.0056  Score=46.07  Aligned_cols=42  Identities=19%  Similarity=0.183  Sum_probs=31.5

Q ss_pred             ccccEEEecCCCCCchhhhhhc-CCceEEccCCccceeccccCCCch
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      +.++|||+||  |..++.+|+. +.+|+.+|.++.  ..+.++.|+.
T Consensus        30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~--~~~~ar~~l~   72 (202)
T 3cvo_A           30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRA--WARMMKAWLA   72 (202)
T ss_dssp             HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHH--HHHHHHHHHH
T ss_pred             CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHH--HHHHHHHHHH
Confidence            5689999998  4688888886 579999999983  4444444443

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=94.00  E-value=0.032  Score=44.68  Aligned_cols=57  Identities=19%  Similarity=0.039  Sum_probs=44.3

Q ss_pred             ccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhh-cCC-ceEEccCCcc
Q 032395           46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNR  103 (141)
Q Consensus        46 ~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~-~ga-~Vv~tD~~~~  103 (141)
                      .+|...=.+++-|.+.... ..+..+.+||||||++|-.+-+++. .|+ +|++.|+...
T Consensus        71 ~~g~y~SR~~~KL~ei~~~-~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~  129 (321)
T 3lkz_A           71 TGGHPVSRGTAKLRWLVER-RFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGP  129 (321)
T ss_dssp             SSCCCSSTHHHHHHHHHHT-TSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCST
T ss_pred             cCCCccchHHHHHHHHHHh-cCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCC
Confidence            3466666788888887776 4445778999999999999996665 566 7999999874

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=93.74  E-value=0.019  Score=51.56  Aligned_cols=53  Identities=11%  Similarity=-0.036  Sum_probs=38.2

Q ss_pred             eeehhHHHHHHHHhhh-----c-ccccccEEEecCCCCCchhhhhhcC-----CceEEccCCcc
Q 032395           51 VWPCSVILAEYVWQQR-----Y-RFSGANVVELGAGTSLPGLVAAKVG-----SNVTLTDDSNR  103 (141)
Q Consensus        51 ~W~as~~la~~l~~~~-----~-~~~~~~vLELG~GtGl~~l~~a~~g-----a~Vv~tD~~~~  103 (141)
                      ...+...++++|....     . .-++.+|+|.|||+|.+.+.+++..     .++++.|+++.
T Consensus       296 qFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~  359 (878)
T 3s1s_A          296 VVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETL  359 (878)
T ss_dssp             SSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGG
T ss_pred             eEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHH
Confidence            3455666777766641     1 1246799999999999888877642     37999999995

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=93.66  E-value=0.033  Score=44.42  Aligned_cols=35  Identities=14%  Similarity=0.140  Sum_probs=28.1

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC--ceEEccCCccc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRI  104 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~~  104 (141)
                      ..++|+|+|||+|..++.+++...  ++++.|+.+++
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~  215 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVV  215 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHH
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHH
Confidence            346899999999999998887643  78888987643

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=93.58  E-value=0.023  Score=48.44  Aligned_cols=50  Identities=12%  Similarity=-0.001  Sum_probs=36.1

Q ss_pred             hhHHHHHHHHhhhc----ccccccEEEecCCCCCchhhhhhc-----CCceEEccCCcc
Q 032395           54 CSVILAEYVWQQRY----RFSGANVVELGAGTSLPGLVAAKV-----GSNVTLTDDSNR  103 (141)
Q Consensus        54 as~~la~~l~~~~~----~~~~~~vLELG~GtGl~~l~~a~~-----ga~Vv~tD~~~~  103 (141)
                      +...++++|.....    ...+.+|+|.+||||-+.+.+++.     ..++++.|+++.
T Consensus       201 TP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~  259 (542)
T 3lkd_A          201 TPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTS  259 (542)
T ss_dssp             CCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHH
T ss_pred             ccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHH
Confidence            34445666655432    235679999999999888877665     348999999984

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=93.56  E-value=0.015  Score=49.45  Aligned_cols=50  Identities=12%  Similarity=-0.109  Sum_probs=36.0

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc--------------------CCceEEccCCcc
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--------------------GSNVTLTDDSNR  103 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~--------------------ga~Vv~tD~~~~  103 (141)
                      +...++++|.......++.+|+|.+||+|-+.+.+++.                    ..++++.|+++.
T Consensus       153 TP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~  222 (541)
T 2ar0_A          153 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPG  222 (541)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHH
T ss_pred             CCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHH
Confidence            33445666665444446789999999999888776642                    137999999984

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=93.21  E-value=0.067  Score=42.63  Aligned_cols=55  Identities=18%  Similarity=0.019  Sum_probs=43.2

Q ss_pred             cceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-CC-ceEEccCCc
Q 032395           47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSN  102 (141)
Q Consensus        47 ~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-ga-~Vv~tD~~~  102 (141)
                      +|...=.+++-|.+...+ ...-++++||||||++|-.+-++++. ++ .|++.|+..
T Consensus        59 ~g~yrSRaa~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~  115 (300)
T 3eld_A           59 VGISVSRGAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGI  115 (300)
T ss_dssp             SCCCSSTTHHHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             CCCccchHHHHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecc
Confidence            355556788888888877 43447899999999999999999864 55 788888864

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=93.12  E-value=0.083  Score=41.21  Aligned_cols=55  Identities=18%  Similarity=0.064  Sum_probs=42.6

Q ss_pred             ceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhh-cCC-ceEEccCCcc
Q 032395           48 GLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNR  103 (141)
Q Consensus        48 g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~-~ga-~Vv~tD~~~~  103 (141)
                      |...=.+++-|.+...+. ....+.+|+||||++|-.+-+++. .|+ +|++.|+...
T Consensus        57 g~yrSRa~~KL~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~  113 (267)
T 3p8z_A           57 HHAVSRGSAKLQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGP  113 (267)
T ss_dssp             SCCSSTHHHHHHHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCST
T ss_pred             CCccchHHHHHHHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCC
Confidence            555556777787777665 445788999999999999996665 466 8999999874

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=92.61  E-value=0.072  Score=42.12  Aligned_cols=46  Identities=15%  Similarity=0.003  Sum_probs=35.1

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      |.+-+...-..-++..+||.+||.|-.+..+++.+.+|++.|.++.
T Consensus        10 Ll~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~   55 (285)
T 1wg8_A           10 LYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPE   55 (285)
T ss_dssp             THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHH
T ss_pred             HHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHH
Confidence            3333333323336789999999999999988887779999999994

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=92.35  E-value=0.063  Score=42.11  Aligned_cols=52  Identities=21%  Similarity=0.033  Sum_probs=39.2

Q ss_pred             cceeeeehhHHHHHHHHhhhccc-ccccEEEecCCCCCchhhhhhc---C---CceEEccC
Q 032395           47 YGLFVWPCSVILAEYVWQQRYRF-SGANVVELGAGTSLPGLVAAKV---G---SNVTLTDD  100 (141)
Q Consensus        47 ~g~~~W~as~~la~~l~~~~~~~-~~~~vLELG~GtGl~~l~~a~~---g---a~Vv~tD~  100 (141)
                      +|...=.+++-|.+.-.+.  .+ ++.+||||||+.|-.+.++++.   +   ..|++.|+
T Consensus        51 ~g~yRSRAayKL~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~  109 (269)
T 2px2_A           51 GGHPVSRGTAKLRWLVERR--FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG  109 (269)
T ss_dssp             CSCCSSTHHHHHHHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT
T ss_pred             CCCcccHHHHHHHHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc
Confidence            3454556788887777664  44 5889999999999999999886   1   26788884

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=91.95  E-value=0.077  Score=41.70  Aligned_cols=32  Identities=22%  Similarity=0.310  Sum_probs=23.0

Q ss_pred             ccEEEecCCCC---Cchhhhhhc--CCceEEccCCcc
Q 032395           72 ANVVELGAGTS---LPGLVAAKV--GSNVTLTDDSNR  103 (141)
Q Consensus        72 ~~vLELG~GtG---l~~l~~a~~--ga~Vv~tD~~~~  103 (141)
                      ..|||||||++   .+.-++.+.  +++|+++|.++.
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~  116 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPI  116 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHH
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChH
Confidence            58999999974   333333332  469999999995

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=91.31  E-value=0.097  Score=42.41  Aligned_cols=38  Identities=13%  Similarity=0.239  Sum_probs=30.9

Q ss_pred             cccEEEecCCCCCchhhhhhc--CCceEEccCCccc-eecc
Q 032395           71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRI-ELLM  108 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~-~~l~  108 (141)
                      +..|||+|.|.|.++..++..  +++|++.+.+..+ +.|+
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~   99 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLN   99 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHH
Confidence            578999999999999988875  4599999999853 3443

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=91.04  E-value=0.044  Score=46.73  Aligned_cols=49  Identities=10%  Similarity=0.053  Sum_probs=33.2

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-----------------CCceEEccCCcc
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-----------------GSNVTLTDDSNR  103 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-----------------ga~Vv~tD~~~~  103 (141)
                      +...++++|........+ +|+|.+||||-+.+.+++.                 ..++++.|+++.
T Consensus       229 TP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~  294 (544)
T 3khk_A          229 TPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPT  294 (544)
T ss_dssp             CCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHH
T ss_pred             CCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHH
Confidence            444566666654333233 8999999999776655431                 237999999984

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=90.08  E-value=0.13  Score=39.66  Aligned_cols=32  Identities=22%  Similarity=0.013  Sum_probs=25.4

Q ss_pred             cccEEEecCCCCCchhhhhhc-------C-------CceEEccCCc
Q 032395           71 GANVVELGAGTSLPGLVAAKV-------G-------SNVTLTDDSN  102 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~-------g-------a~Vv~tD~~~  102 (141)
                      ..+|||+|+|+|+..+.+++.       .       .+++.++..+
T Consensus        61 ~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p  106 (257)
T 2qy6_A           61 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFP  106 (257)
T ss_dssp             EEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSC
T ss_pred             CCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCc
Confidence            358999999999998876542       1       2789999887

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=87.89  E-value=0.097  Score=41.69  Aligned_cols=35  Identities=20%  Similarity=0.179  Sum_probs=30.3

Q ss_pred             cccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      .++.++|||-||+|-+++.+.+.|. .|++.|+++.
T Consensus         9 ~~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~   44 (327)
T 2c7p_A            9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKY   44 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHH
T ss_pred             cCCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHH
Confidence            3557899999999999999999999 6788999984

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=86.75  E-value=0.12  Score=42.29  Aligned_cols=44  Identities=16%  Similarity=0.050  Sum_probs=32.5

Q ss_pred             ccccEEEecCCCCCchhhhh-hc-C--CceEEccCCccceeccccCCCch
Q 032395           70 SGANVVELGAGTSLPGLVAA-KV-G--SNVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a-~~-g--a~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      ++..|+|+||+.|..++.++ +. +  ++|++.+-++.  ..+.++.|..
T Consensus       226 ~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~--~~~~L~~n~~  273 (409)
T 2py6_A          226 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRI--NLQTLQNVLR  273 (409)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHH--HHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHH--HHHHHHHHHH
Confidence            56789999999999999776 43 3  48999999984  3444444443

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=85.00  E-value=0.13  Score=41.10  Aligned_cols=32  Identities=19%  Similarity=0.051  Sum_probs=28.3

Q ss_pred             ccEEEecCCCCCchhhhhhcC--C-ceEEccCCcc
Q 032395           72 ANVVELGAGTSLPGLVAAKVG--S-NVTLTDDSNR  103 (141)
Q Consensus        72 ~~vLELG~GtGl~~l~~a~~g--a-~Vv~tD~~~~  103 (141)
                      .+||||-||+|-+++.+.+.|  + .|++.|.++.
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~   37 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTV   37 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHH
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHH
Confidence            579999999999999998888  4 6899999984

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=84.79  E-value=0.075  Score=41.96  Aligned_cols=64  Identities=13%  Similarity=0.119  Sum_probs=46.6

Q ss_pred             eeeeh----hHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchh
Q 032395           50 FVWPC----SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        50 ~~W~a----s~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      ++|.+    ...+..|+..... |.+..+||+=+|||.+|+-+.+.+.+++++|.++  +..+.++.|+..
T Consensus        68 rl~~~~~~~p~~l~~yf~~l~~-~n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~--~a~~~L~~Nl~~  135 (283)
T 2oo3_A           68 PVWLDRENLPSLFLEYISVIKQ-INLNSTLSYYPGSPYFAINQLRSQDRLYLCELHP--TEYNFLLKLPHF  135 (283)
T ss_dssp             HHHHTGGGSCGGGHHHHHHHHH-HSSSSSCCEEECHHHHHHHHSCTTSEEEEECCSH--HHHHHHTTSCCT
T ss_pred             HHHhcccCCcHHHHHHHHHHHH-hcCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCH--HHHHHHHHHhCc
Confidence            56662    3345666555443 6788899999999999999888556999999998  355566666543

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=84.49  E-value=0.77  Score=36.11  Aligned_cols=47  Identities=19%  Similarity=0.187  Sum_probs=37.5

Q ss_pred             HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ..|.+.+.... .-+|..|||-=||+|-.++++.++|.+.+++|+++.
T Consensus       239 ~~l~~~~i~~~-~~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~  285 (323)
T 1boo_A          239 AKLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPE  285 (323)
T ss_dssp             THHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHH
T ss_pred             HHHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHH
Confidence            44555554422 236789999999999999999999999999999995

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=82.04  E-value=1.1  Score=34.96  Aligned_cols=37  Identities=24%  Similarity=0.206  Sum_probs=26.1

Q ss_pred             cccccccEEEecCC-CCCchhhhhh-cCCceEEccCCcc
Q 032395           67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNR  103 (141)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~l~~a~-~ga~Vv~tD~~~~  103 (141)
                      ..-+|++||-.||| .|+..+.+++ .|++|+++|.++.
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~  201 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDA  201 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            34478889989986 3555554454 5889999998763

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=80.94  E-value=1  Score=36.44  Aligned_cols=32  Identities=22%  Similarity=0.364  Sum_probs=24.9

Q ss_pred             ccEEEecCCCCCchhhhhhc------------C----C--ceEEccCCcc
Q 032395           72 ANVVELGAGTSLPGLVAAKV------------G----S--NVTLTDDSNR  103 (141)
Q Consensus        72 ~~vLELG~GtGl~~l~~a~~------------g----a--~Vv~tD~~~~  103 (141)
                      -+|+||||++|-.++.+...            +    .  .|+..|+..+
T Consensus        53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~N  102 (359)
T 1m6e_X           53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGN  102 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTS
T ss_pred             eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCch
Confidence            47999999999999866533            1    1  6888998875

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=80.56  E-value=1.2  Score=34.83  Aligned_cols=36  Identities=19%  Similarity=0.181  Sum_probs=25.9

Q ss_pred             cccccccEEEecCC-CCCchhhhhh-cCCceEEccCCc
Q 032395           67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN  102 (141)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~l~~a~-~ga~Vv~tD~~~  102 (141)
                      ..-+|.+||-.|+| .|+..+.+++ +|++|+++|.++
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~  210 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNE  210 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            34468899999986 3555554454 588999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	141
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.19
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.96
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.89
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.89
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.82
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.76
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.61
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.58
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	98.56
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	98.47
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.44
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.39
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.36
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.34
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.33
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.32
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.27
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.26
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.24
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.23
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.22
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.21
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.2
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.17
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.14
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.09
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.05
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.03
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.97
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	97.97
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	97.96
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	97.93
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	97.92
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	97.92
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	97.91
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.88
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	97.86
d2h00a1	250	Methyltransferase 10 domain containing protein MET	97.81
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.79
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.79
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	97.76
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.73
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.72
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.72
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.71
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.71
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.69
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	97.69
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.68
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.68
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	97.68
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.67
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	97.64
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.64
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.53
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	97.48
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.46
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.43
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.42
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.37
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.35
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.33
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.32
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	97.17
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	97.16
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	97.02
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	96.94
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	96.93
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	96.78
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	96.77
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	96.76
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	96.74
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.52
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	96.49
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	96.36
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	96.04
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	95.71
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	95.61
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	95.14
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	95.11
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	95.02
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	94.22
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	93.77
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	92.86
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	92.45
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	92.15
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	91.85
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	91.39
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	90.63
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	89.34
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	89.33
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	89.28
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	89.25
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	88.22
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	87.87
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	86.74
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	86.28
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	86.19
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	86.02
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	83.83
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	83.8
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	83.77
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	83.7
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	83.45
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	81.68
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	81.21
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	80.44

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.19  E-value=2e-12  Score=99.48  Aligned_cols=79  Identities=16%  Similarity=0.196  Sum_probs=61.1

Q ss_pred             CceehhhhhhcccccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCC
Q 032395           33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLP  112 (141)
Q Consensus        33 ~~~~i~i~~~~~~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~  112 (141)
                      ..+.|.|.+.+..++|.|  |++..+.+++...  ..+|++|||+|||+|.+++.+++.|++|+++|+++  +.++.++.
T Consensus        87 ~~~~i~i~pg~aFGTG~H--~TT~l~l~~l~~~--~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~--~av~~A~~  160 (254)
T d2nxca1          87 AEIPLVIEPGMAFGTGHH--ETTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDP--MVLPQAEA  160 (254)
T ss_dssp             SSEEEECCCC-----CCS--HHHHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCG--GGHHHHHH
T ss_pred             cceEEEEccccccCcccc--chhhHHHHHHHhh--cCccCEEEEcccchhHHHHHHHhcCCEEEEEECCh--HHHHHHHH
Confidence            456788877777788877  6888888888764  34899999999999999999999999999999999  46777777


Q ss_pred             Cchhh
Q 032395          113 PSHIC  117 (141)
Q Consensus       113 N~~~n  117 (141)
                      |+..|
T Consensus       161 na~~n  165 (254)
T d2nxca1         161 NAKRN  165 (254)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            76655

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.96  E-value=6.6e-11  Score=87.86  Aligned_cols=86  Identities=17%  Similarity=0.199  Sum_probs=56.5

Q ss_pred             ccceeeeehhHHHHHHHHhh---hcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCch----hh
Q 032395           46 EYGLFVWPCSVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSH----IC  117 (141)
Q Consensus        46 ~~g~~~W~as~~la~~l~~~---~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~----~n  117 (141)
                      ...+.++++...+|.++...   ...+.|++|||+|||+|.+++.+++.|+ +|+++|+++.  +++.+++|..    .+
T Consensus        21 ~~~leQy~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~--a~~~ar~N~~~~~~~~   98 (197)
T d1ne2a_          21 KNYLEQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPD--AIETAKRNCGGVNFMV   98 (197)
T ss_dssp             ------CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHH--HHHHHHHHCTTSEEEE
T ss_pred             CcccccCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHH--HHHHHHHccccccEEE
Confidence            44455666777777766442   4567999999999999999999999997 7999999984  4554444443    22


Q ss_pred             hhhhccCCcceEEEEE
Q 032395          118 SRVLQDQSSLRLIIIE  133 (141)
Q Consensus       118 ~~~~~~~~~v~v~~l~  133 (141)
                      +.+.....+++++..+
T Consensus        99 ~D~~~l~~~fD~Vi~N  114 (197)
T d1ne2a_          99 ADVSEISGKYDTWIMN  114 (197)
T ss_dssp             CCGGGCCCCEEEEEEC
T ss_pred             EehhhcCCcceEEEeC
Confidence            2222235667766654

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=1.4e-10  Score=90.72  Aligned_cols=78  Identities=23%  Similarity=0.268  Sum_probs=53.9

Q ss_pred             HHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccce-eccccCCCchhh------hhhh---ccCCcceE
Q 032395           61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIE-LLMTSLPPSHIC------SRVL---QDQSSLRL  129 (141)
Q Consensus        61 ~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~-~l~n~~~N~~~n------~~~~---~~~~~v~v  129 (141)
                      +|..+...++|++|||+|||+|++++.+|++|| +|+++|.++.+. +.++++.|...+      +...   ....++++
T Consensus        24 ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~  103 (316)
T d1oria_          24 SMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDI  103 (316)
T ss_dssp             HHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEE
T ss_pred             HHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEE
Confidence            355556678999999999999999999999998 899999988532 222333332211      1111   11468899


Q ss_pred             EEEEE-eEEe
Q 032395          130 IIIEV-GIIL  138 (141)
Q Consensus       130 ~~l~W-G~~l  138 (141)
                      +..+| +.+|
T Consensus       104 ivs~~~~~~l  113 (316)
T d1oria_         104 IISEWMGYCL  113 (316)
T ss_dssp             EEECCCBBTB
T ss_pred             Eeeeeeeeee
Confidence            98888 5544

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2e-10  Score=89.38  Aligned_cols=78  Identities=24%  Similarity=0.303  Sum_probs=54.1

Q ss_pred             HHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccce-eccccCCC-chhh-----hhhh---ccCCcceEE
Q 032395           62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIE-LLMTSLPP-SHIC-----SRVL---QDQSSLRLI  130 (141)
Q Consensus        62 l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~-~l~n~~~N-~~~n-----~~~~---~~~~~v~v~  130 (141)
                      +.++...+++++|||+|||+|++++.+|+.|+ +|+++|.++.+. +.++++.| ...+     +.+.   ....+++++
T Consensus        27 i~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~I  106 (311)
T d2fyta1          27 IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVI  106 (311)
T ss_dssp             HHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEE
T ss_pred             HHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEE
Confidence            56666778999999999999999999999998 899999998542 22222222 1111     1111   114688999


Q ss_pred             EEEE-eEEee
Q 032395          131 IIEV-GIILL  139 (141)
Q Consensus       131 ~l~W-G~~ll  139 (141)
                      ..+| |.+++
T Consensus       107 vse~~~~~~~  116 (311)
T d2fyta1         107 ISEWMGYFLL  116 (311)
T ss_dssp             EECCCBTTBT
T ss_pred             EEeeeeeecc
Confidence            8888 65543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.82  E-value=3.5e-10  Score=88.67  Aligned_cols=78  Identities=26%  Similarity=0.277  Sum_probs=53.5

Q ss_pred             HHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceecc-ccCCCchhh------hhhh--cc-CCcceE
Q 032395           61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLM-TSLPPSHIC------SRVL--QD-QSSLRL  129 (141)
Q Consensus        61 ~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~-n~~~N~~~n------~~~~--~~-~~~v~v  129 (141)
                      .+.++...++|++|||+|||+|++++++|+.|+ +|++.|.++.++..+ +++.|...+      +.+.  .. ..++++
T Consensus        29 aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~  108 (328)
T d1g6q1_          29 AIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDI  108 (328)
T ss_dssp             HHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEE
T ss_pred             HHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeE
Confidence            355556678999999999999999999999998 899999998533322 222222111      1111  11 467888


Q ss_pred             EEEEE-eEEe
Q 032395          130 IIIEV-GIIL  138 (141)
Q Consensus       130 ~~l~W-G~~l  138 (141)
                      +..+| +.++
T Consensus       109 i~se~~~~~~  118 (328)
T d1g6q1_         109 IISEWMGYFL  118 (328)
T ss_dssp             EEECCCBTTB
T ss_pred             EEEEecceee
Confidence            88888 5544

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.76  E-value=1e-09  Score=80.99  Aligned_cols=64  Identities=19%  Similarity=0.126  Sum_probs=47.4

Q ss_pred             eehhHHHHHHHHh---hhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395           52 WPCSVILAEYVWQ---QRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        52 W~as~~la~~l~~---~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      .++...+|..+..   ....++|++|||+|||||.+++.++..|+ +|+++|+++  +.++.++.|+..+
T Consensus        25 y~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~--~~~~~a~~N~~~~   92 (201)
T d1wy7a1          25 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDK--EAVDVLIENLGEF   92 (201)
T ss_dssp             CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHTGGG
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcH--HHHHHHHHHHHHc
Confidence            3455555665543   23467999999999999999999999997 899999998  3555555554433

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.61  E-value=2.2e-09  Score=75.67  Aligned_cols=48  Identities=19%  Similarity=0.202  Sum_probs=39.0

Q ss_pred             cccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchh
Q 032395           67 YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      ..++|++|||||||||.+|+.++..|| +|+++|.++.  +++.+++|+..
T Consensus        11 ~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~--a~~~~~~n~~~   59 (152)
T d2esra1          11 PYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRK--AQAIIQDNIIM   59 (152)
T ss_dssp             SCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHH--HHHHHHHHHHT
T ss_pred             hhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchh--hhhhhhhhhhh
Confidence            357899999999999999999999998 9999999983  45444444443

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.58  E-value=4.9e-09  Score=76.14  Aligned_cols=59  Identities=20%  Similarity=0.233  Sum_probs=43.5

Q ss_pred             eehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchh
Q 032395           52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        52 W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      .+++..|++.+    ...++++|||+|||+|..++.+++.+++|+++|+++.  .++.+++|+..
T Consensus        38 d~~t~lLi~~l----~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~--~i~~a~~n~~~   96 (194)
T d1dusa_          38 DKGTKILVENV----VVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRR--AIKLAKENIKL   96 (194)
T ss_dssp             CHHHHHHHHHC----CCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHH--HHHHHHHHHHH
T ss_pred             CHHHHHHHHhC----CcCCCCeEEEEeecCChhHHHHHhhccccceeeeccc--cchhHHHHHHH
Confidence            44554554443    3447899999999999999999998889999999984  44444444433

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.56  E-value=5.8e-09  Score=75.32  Aligned_cols=50  Identities=18%  Similarity=0.009  Sum_probs=40.6

Q ss_pred             hcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395           66 RYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        66 ~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ...-++.+|||+|||+|..++.+|+.+++|+++|.++.  .++.+++|+..+
T Consensus        29 l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~--~l~~a~~n~~~~   78 (186)
T d1l3ia_          29 AEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPE--AISTTEMNLQRH   78 (186)
T ss_dssp             HCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHH--HHHHHHHHHHHT
T ss_pred             cCCCCCCEEEEEECCeEcccccccccceEEEEecCCHH--HHHHHHHHHHHc
Confidence            34458899999999999999999998889999999984  566666665443

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.47  E-value=1.6e-08  Score=74.78  Aligned_cols=46  Identities=13%  Similarity=0.114  Sum_probs=39.0

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ..++|.+..+.-+|.+|||+|||+|..+..+++.+++|+++|+++.
T Consensus         4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~   49 (234)
T d1xxla_           4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKE   49 (234)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHH
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChh
Confidence            3455666555557899999999999999999999999999999984

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.44  E-value=2.1e-08  Score=71.98  Aligned_cols=47  Identities=19%  Similarity=0.115  Sum_probs=40.0

Q ss_pred             cccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      -+|++|||+|||+|..|+.+++.|++|+++|.++  +.++.++.|+..|
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~--~a~~~~~~N~~~~   86 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDP--EAVRLLKENVRRT   86 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCH--HHHHHHHHHHHHH
T ss_pred             cCCCeEEEeccccchhhhhhhhccchhhhcccCH--HHHhhhhHHHHhh
Confidence            4789999999999999999999999999999999  4666666666554

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.39  E-value=3e-08  Score=73.31  Aligned_cols=34  Identities=29%  Similarity=0.353  Sum_probs=31.8

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      +.++|||+|||||..++.+++.|++|+++|.++.
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~   74 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEE   74 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCCCccchhhcccceEEEEEeeccc
Confidence            5678999999999999999999999999999994

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.36  E-value=4.4e-08  Score=69.04  Aligned_cols=45  Identities=22%  Similarity=0.090  Sum_probs=36.7

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      |..|+... ..-++++|||+|||+|..++.+|+.|.+|+++|+++.
T Consensus         9 ~~~~~~~l-~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~   53 (201)
T d1pjza_           9 LQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEA   53 (201)
T ss_dssp             HHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHH
T ss_pred             HHHHHHHc-CCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHH
Confidence            33444332 2337899999999999999999999999999999984

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.6e-07  Score=69.26  Aligned_cols=50  Identities=18%  Similarity=-0.037  Sum_probs=41.8

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ....|.+++......-++.+|||+|||+|..++.+|+.|++|+++|+++.
T Consensus        29 ~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~   78 (229)
T d2bzga1          29 GHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISEL   78 (229)
T ss_dssp             CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHH
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHH
Confidence            34556777766544457889999999999999999999999999999994

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.33  E-value=4.5e-08  Score=71.59  Aligned_cols=34  Identities=32%  Similarity=0.426  Sum_probs=32.1

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..+..+++.|++|+++|.++.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~   75 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKE   75 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCCchhcccccccceEEEEeecccc
Confidence            6789999999999999999999999999999995

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.32  E-value=5.3e-08  Score=71.73  Aligned_cols=45  Identities=16%  Similarity=0.106  Sum_probs=37.2

Q ss_pred             HHHHHhh-hcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           59 AEYVWQQ-RYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        59 a~~l~~~-~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .+|+... ...+++++|||+|||+|..+..+++.|++|+++|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~   53 (225)
T d2p7ia1           8 HPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEE   53 (225)
T ss_dssp             HHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHH
T ss_pred             HHHHHHHhhhhCCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHH
Confidence            3455443 34568899999999999999999999999999999984

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.27  E-value=7e-08  Score=70.40  Aligned_cols=34  Identities=15%  Similarity=0.123  Sum_probs=31.9

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|..++.+++.+++|+++|+++.
T Consensus        15 ~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~   48 (231)
T d1vl5a_          15 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTED   48 (231)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHH
T ss_pred             CcCEEEEecccCcHHHHHHHHhCCEEEEEECCHH
Confidence            6789999999999999999999999999999984

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.26  E-value=4.8e-08  Score=70.60  Aligned_cols=34  Identities=21%  Similarity=0.217  Sum_probs=31.5

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..++.+++.+++|+++|.++.
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~   70 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISED   70 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEECCCcchhhhhHhhhhccccccccccc
Confidence            5678999999999999999999999999999984

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.24  E-value=7.4e-08  Score=73.52  Aligned_cols=34  Identities=24%  Similarity=0.415  Sum_probs=31.8

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .+++|||+|||+|..++.+++.|++|+++|+++.
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~   89 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDK   89 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCCeeeeccCchH
Confidence            5679999999999999999999999999999984

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=1e-07  Score=70.78  Aligned_cols=52  Identities=19%  Similarity=0.054  Sum_probs=43.3

Q ss_pred             eehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        52 W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      +|.+......+.......+|++|||+|||+|..++.+++. +++|+++|.++.
T Consensus        15 ~p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~   67 (245)
T d1nkva_          15 NPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSL   67 (245)
T ss_dssp             SSCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHH
T ss_pred             CCCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccc
Confidence            5677777777777766778999999999999988887764 779999999984

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.22  E-value=8.4e-08  Score=73.23  Aligned_cols=46  Identities=20%  Similarity=0.146  Sum_probs=39.9

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      +|.+|||+|||+|..++.+|+.|+ +|+++|+++  .+++.++.|+.+|
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~--~a~~~~~~N~~~n  153 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDP--YTFKFLVENIHLN  153 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCH--HHHHHHHHHHHHT
T ss_pred             CccEEEECcceEcHHHHHHHHhCCcEEEEecCCH--HHHHHHHHHHHHh
Confidence            688999999999999999999886 999999999  4666667777666

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=1.1e-07  Score=68.70  Aligned_cols=47  Identities=17%  Similarity=0.093  Sum_probs=39.7

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchh
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      .+.+++||||+||||.+|+.++..|| +|+++|.++  ++++.++.|++.
T Consensus        41 ~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~--~a~~~~k~N~~~   88 (183)
T d2fpoa1          41 VIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDR--AVSQQLIKNLAT   88 (183)
T ss_dssp             HHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCH--HHHHHHHHHHHH
T ss_pred             ccchhhhhhhhccccceeeeEEecCcceeEEEEEee--chhhHHHHHHhh
Confidence            46899999999999999999999999 899999998  456655555543

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.20  E-value=1.3e-07  Score=70.15  Aligned_cols=35  Identities=17%  Similarity=-0.005  Sum_probs=32.6

Q ss_pred             cccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .++++|||+|||+|..++.+++.|.+|+++|.++.
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~   70 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQE   70 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHH
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchh
Confidence            46789999999999999999999999999999995

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.17  E-value=1.4e-07  Score=68.07  Aligned_cols=36  Identities=25%  Similarity=0.307  Sum_probs=32.7

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ..++.+|||+|||+|..++.+++.|++|+++|+++.
T Consensus        28 ~~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~   63 (198)
T d2i6ga1          28 VVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPA   63 (198)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHH
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHHhhhhccccCcHH
Confidence            446679999999999999999999999999999984

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=2.3e-07  Score=71.40  Aligned_cols=60  Identities=15%  Similarity=0.137  Sum_probs=42.8

Q ss_pred             hHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcC--CceEEccCCccceeccccCCCchhh
Q 032395           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        55 s~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      +..|.+....... -++.+|||||||+|.+++.+++..  ++|+++|+++  ++++.+++|+..+
T Consensus        94 TE~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~--~Al~~A~~Na~~~  155 (274)
T d2b3ta1          94 TECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMP--DAVSLAQRNAQHL  155 (274)
T ss_dssp             HHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSH--HHHHHHHHHHHHH
T ss_pred             hhhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchh--HHHhHHHHHHHHh
Confidence            3345554443221 245689999999999999887754  3999999999  5777777776544

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.8e-07  Score=69.11  Aligned_cols=35  Identities=26%  Similarity=0.536  Sum_probs=30.8

Q ss_pred             cccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      .++++|||+|||+|..++.++..+. +|+++|+++.
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~   85 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDR   85 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHH
Confidence            4678999999999999988887766 8999999995

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.05  E-value=2.4e-07  Score=66.95  Aligned_cols=48  Identities=17%  Similarity=0.126  Sum_probs=40.1

Q ss_pred             cccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchh
Q 032395           67 YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHI  116 (141)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~  116 (141)
                      ..++|++||||.||||.+|+.++..|| +|+++|.++  ++++.++.|+..
T Consensus        38 ~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~--~a~~~~~~N~~~   86 (182)
T d2fhpa1          38 PYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNF--AALKVIKENIAI   86 (182)
T ss_dssp             SCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHH
T ss_pred             HhcCCCEEEEcccccccccceeeecchhHHHHHHHHH--HHHHHHHHHhhh
Confidence            356899999999999999999999999 899999998  456666666543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=3.6e-07  Score=67.58  Aligned_cols=34  Identities=15%  Similarity=0.282  Sum_probs=30.5

Q ss_pred             ccccEEEecCCCCCchhhhhhcC-CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g-a~Vv~tD~~~~  103 (141)
                      +|++|||+|||+|..+..+++.+ ++|+++|+++.
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~   87 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDG   87 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHH
T ss_pred             CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHH
Confidence            78899999999999999888865 49999999984

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.97  E-value=3.9e-07  Score=71.21  Aligned_cols=46  Identities=22%  Similarity=0.166  Sum_probs=40.1

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      +|++|||++||+|..++.+++.|+ +|+++|+++  +.++.++.|+..|
T Consensus       145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~--~al~~a~~N~~~n  191 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSP--RAIETAKENAKLN  191 (324)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCH--HHHHHHHHHHHHT
T ss_pred             CCCeeecccCcccchhhhhhhcCCcEEEeecCCH--HHHHHHHHHHHHc
Confidence            589999999999999999999998 899999999  4677777776666

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.97  E-value=7.9e-07  Score=65.03  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=29.5

Q ss_pred             ccccEEEecCCCCCchhhhhhc----CCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~----ga~Vv~tD~~~~  103 (141)
                      ++.+|||||||+|..++.+++.    +++|+++|.++.
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~   76 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQP   76 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHH
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHH
Confidence            6789999999999999887763    569999999995

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=97.96  E-value=2.3e-06  Score=64.54  Aligned_cols=36  Identities=17%  Similarity=0.133  Sum_probs=31.4

Q ss_pred             ccccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      .-++.+|||+|||+|..++.+++. +++|+++|+++.
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~  101 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPV  101 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccch
Confidence            336889999999999999888775 789999999985

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.93  E-value=1.1e-06  Score=65.62  Aligned_cols=58  Identities=16%  Similarity=0.133  Sum_probs=44.7

Q ss_pred             ccceeeeehhH-HHHHHHHhhhc---ccccccEEEecCCCCCchhhhhhcCC--ceEEccCCcc
Q 032395           46 EYGLFVWPCSV-ILAEYVWQQRY---RFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNR  103 (141)
Q Consensus        46 ~~g~~~W~as~-~la~~l~~~~~---~~~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~  103 (141)
                      ....+.|+.-. -||.-+.....   .-+|.+|||||||+|.....+|..+.  .|+++|+++.
T Consensus        46 ~~e~r~w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~  109 (230)
T d1g8sa_          46 DEEYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPR  109 (230)
T ss_dssp             TEEEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHH
T ss_pred             CceeeeECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHH
Confidence            45689998755 46666655433   33688999999999999998888753  8999999995

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=6.4e-07  Score=65.50  Aligned_cols=35  Identities=14%  Similarity=0.068  Sum_probs=28.6

Q ss_pred             cccccEEEecCCCCCchhhhhh-cCCceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~-~ga~Vv~tD~~~~  103 (141)
                      ..+.+|||+|||+|..+..+++ .+.+|+++|+++.
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~   94 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITED   94 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHH
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHH
Confidence            3567899999999998876654 4558999999994

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.92  E-value=1.3e-06  Score=64.24  Aligned_cols=56  Identities=18%  Similarity=0.136  Sum_probs=41.6

Q ss_pred             ceeeeehhH-HHHHHHHhhh--cccccccEEEecCCCCCchhhhhhc-CC-ceEEccCCcc
Q 032395           48 GLFVWPCSV-ILAEYVWQQR--YRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNR  103 (141)
Q Consensus        48 g~~~W~as~-~la~~l~~~~--~~~~~~~vLELG~GtGl~~l~~a~~-ga-~Vv~tD~~~~  103 (141)
                      +.+.|+.-. -||..+....  ..-+|.+|||+|||+|.....++.. +. +|+++|+++.
T Consensus        31 ~~r~w~p~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~   91 (209)
T d1nt2a_          31 GYREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAK   91 (209)
T ss_dssp             TEEECCGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHH
T ss_pred             ceeeeCCcchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHH
Confidence            568898543 4566665532  2336899999999999998888875 43 8999999984

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.91  E-value=6.9e-07  Score=69.86  Aligned_cols=46  Identities=26%  Similarity=0.229  Sum_probs=41.4

Q ss_pred             ccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ++++||+|.||||..++.+++.|++|+.+|.+.  ..++.++.|..+|
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~--~al~~a~~N~~ln  177 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASK--KAIGWAKENQVLA  177 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCH--HHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCCcHHHHHHHhCCCeEEEEeChH--HHHHHHHHhhhhh
Confidence            688999999999999999999999999999998  5777777877776

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.88  E-value=1.3e-06  Score=65.25  Aligned_cols=51  Identities=16%  Similarity=0.265  Sum_probs=41.4

Q ss_pred             ehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        53 ~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      -.+..+..+|.+....-++.+|||+|||+|..+..+|+++.+|+++|.++.
T Consensus        53 ~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~  103 (224)
T d1vbfa_          53 TTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEK  103 (224)
T ss_dssp             ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHH
T ss_pred             eehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHhcccccccccHH
Confidence            344555555666555558899999999999999999999999999999984

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=97.86  E-value=3.1e-06  Score=62.94  Aligned_cols=34  Identities=24%  Similarity=0.254  Sum_probs=30.6

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      ++++|||||||+|.....+++.+. +|+++|.++.
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~   58 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEV   58 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHH
T ss_pred             CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHH
Confidence            678999999999988888888886 8999999995

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=1.4e-06  Score=65.73  Aligned_cols=45  Identities=11%  Similarity=-0.000  Sum_probs=37.4

Q ss_pred             cccEEEecCCCCCchhhhhhc--CCceEEccCCccceeccccCCCchhh
Q 032395           71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ..++||+|||+|.+++.+++.  +++|+++|+++  ++++.+++|++.|
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~--~al~~A~~N~~~n  108 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDD--MCFNYAKKNVEQN  108 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCH--HHHHHHHHHHHHT
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCH--HHHHHHHHHHHHh
Confidence            358999999999999988765  56999999999  5777777777665

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.79  E-value=8.4e-07  Score=69.19  Aligned_cols=48  Identities=21%  Similarity=0.118  Sum_probs=39.7

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      ..+|++|||++||+|..++.+|+.+++|+++|.++  ..++.+++|+..|
T Consensus       143 ~~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~--~al~~a~~n~~~n  190 (318)
T d1wxxa2         143 RFRGERALDVFSYAGGFALHLALGFREVVAVDSSA--EALRRAEENARLN  190 (318)
T ss_dssp             GCCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCH--HHHHHHHHHHHHT
T ss_pred             HhCCCeeeccCCCCcHHHHHHHhcCCcEEeecchH--HHHHHHHHHHHHc
Confidence            34899999999999999998887666999999999  4666666666655

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.79  E-value=6.3e-06  Score=63.00  Aligned_cols=46  Identities=15%  Similarity=0.063  Sum_probs=36.2

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      ..+.+......-+|.+|||+|||+|-+++.+++. |++|+++|+++.
T Consensus        40 k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~   86 (280)
T d2fk8a1          40 KVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKN   86 (280)
T ss_dssp             HHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHH
T ss_pred             HHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHH
Confidence            3344444444457899999999999999888865 889999999995

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=97.76  E-value=2.6e-06  Score=65.33  Aligned_cols=61  Identities=20%  Similarity=0.208  Sum_probs=44.5

Q ss_pred             hHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        55 s~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      +..|.+++......-...+++|+|||+|..++.+++... +|+++|+++  +++..+++|+..+
T Consensus        95 TE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~--~Al~~A~~Na~~~  156 (271)
T d1nv8a_          95 TEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSS--KAVEIARKNAERH  156 (271)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCH--HHHHHHHHHHHHT
T ss_pred             hhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhh--hHHHHHHHHHHHc
Confidence            344555555433333456899999999999998887654 999999999  5777777776655

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.73  E-value=3.1e-06  Score=64.51  Aligned_cols=52  Identities=15%  Similarity=0.158  Sum_probs=38.9

Q ss_pred             HHhhhcccccccEEEecCCCCCchhhhhhc-C--CceEEccCCccceeccccCCCch
Q 032395           62 VWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        62 l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      |......-+|++|||+|||+|.+++.+|+. +  .+|++.|.++  +.++.+++|+.
T Consensus        95 Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~--~~~~~A~~~~~  149 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKRE--EFAKLAESNLT  149 (266)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCH--HHHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCH--HHHHHHHHHHH
Confidence            333344558999999999999999988875 3  3899999998  45555555543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.72  E-value=2.7e-06  Score=62.52  Aligned_cols=50  Identities=24%  Similarity=0.258  Sum_probs=37.8

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-CC--ceEEccCCcc
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNR  103 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-ga--~Vv~tD~~~~  103 (141)
                      ++..+...+.+....-+|.+|||+|||+|..+..+|+. +.  +|+++|.++.
T Consensus        59 ~~P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~  111 (213)
T d1dl5a1          59 SQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRK  111 (213)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHH
T ss_pred             ccchhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchh
Confidence            44444445555445557899999999999999988874 43  8999999984

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.72  E-value=2.1e-06  Score=65.12  Aligned_cols=46  Identities=13%  Similarity=0.170  Sum_probs=35.2

Q ss_pred             cccccccEEEecCCCCCchhhhhhc-C--CceEEccCCccceeccccCCCc
Q 032395           67 YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      ...+|.+|||+|||+|.+++.+|+. +  .+|+++|.++.  .++.+++|+
T Consensus        82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~--~~~~A~~n~  130 (250)
T d1yb2a1          82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDED--NLKKAMDNL  130 (250)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHH--HHHHHHHHH
T ss_pred             CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHH--HHHHHHHHH
Confidence            3457899999999999999988875 3  38999999984  444444443

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=6e-06  Score=64.27  Aligned_cols=61  Identities=11%  Similarity=0.009  Sum_probs=45.7

Q ss_pred             hHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccceeccccCCCchhh
Q 032395           55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        55 s~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      +..|.+.+......-++.+||||-||+|..|+.+|+.+++|+++|.++  +.++.+++|+..|
T Consensus       197 ~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~--~ai~~A~~na~~n  257 (358)
T d1uwva2         197 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVP--ALVEKGQQNARLN  257 (358)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCH--HHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEeccCcH--HHHHHHHHhHHhc
Confidence            334444444433344678999999999999999999999999999998  4666666666655

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.71  E-value=1.3e-05  Score=60.40  Aligned_cols=42  Identities=21%  Similarity=0.185  Sum_probs=35.1

Q ss_pred             HHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        62 l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      +......-++.+|||+|||+|.++..+++.+++|++.|+++.
T Consensus        21 Iv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~   62 (245)
T d1yuba_          21 IIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSH   62 (245)
T ss_dssp             HHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCS
T ss_pred             HHHhcCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeeccc
Confidence            444333446789999999999999999999999999999995

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.69  E-value=2.1e-06  Score=61.69  Aligned_cols=46  Identities=13%  Similarity=0.050  Sum_probs=39.0

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCch
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      .+.+.+||||-||||.+|+-++..|| +|++.|.+.  ++++.++.|++
T Consensus        41 ~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~--~a~~~ik~Ni~   87 (183)
T d2ifta1          41 YIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDK--TVANQLKKNLQ   87 (183)
T ss_dssp             HHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCH--HHHHHHHHHHH
T ss_pred             hcccceEeecccCccceeeeeeeecceeeEEeeccc--chhhhHhhHHh
Confidence            46889999999999999999999999 999999998  45555555544

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1e-05  Score=60.71  Aligned_cols=38  Identities=24%  Similarity=0.343  Sum_probs=30.7

Q ss_pred             cccccccEEEecCCCCCchhhhh-hcCCceEEccCCccc
Q 032395           67 YRFSGANVVELGAGTSLPGLVAA-KVGSNVTLTDDSNRI  104 (141)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~l~~a-~~ga~Vv~tD~~~~~  104 (141)
                      ..++|+++||+|||+|+..++.+ +.+.+|+++|+++.+
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~   89 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVN   89 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHH
T ss_pred             CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHH
Confidence            34578899999999999887655 445589999999953

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.68  E-value=1.2e-05  Score=61.85  Aligned_cols=46  Identities=15%  Similarity=0.070  Sum_probs=36.5

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhh-hcCCceEEccCCcc
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAA-KVGSNVTLTDDSNR  103 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a-~~ga~Vv~tD~~~~  103 (141)
                      ..+++......-+|.+|||+|||.|-+++.+| +.|++|+++++++.
T Consensus        49 k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~   95 (291)
T d1kpia_          49 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSEN   95 (291)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHH
T ss_pred             HHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHH
Confidence            34445554555588999999999999998766 56889999999985

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=6.3e-06  Score=61.07  Aligned_cols=59  Identities=19%  Similarity=0.282  Sum_probs=40.0

Q ss_pred             hhHHHHHHHHhhh--cccccccEEEecCCCCCchhhhhhc-C--CceEEccCCccceeccccCCCc
Q 032395           54 CSVILAEYVWQQR--YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        54 as~~la~~l~~~~--~~~~~~~vLELG~GtGl~~l~~a~~-g--a~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      .+..+...+.+.-  ..-+|.+|||+|||+|..+..+|++ +  .+|+++|..+.  +++.++.|.
T Consensus        58 s~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~--l~~~a~~~l  121 (224)
T d1i1na_          58 SAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKE--LVDDSVNNV  121 (224)
T ss_dssp             CCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHH--HHHHHHHHH
T ss_pred             hhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHH--HHHHHHHhc
Confidence            3444444444432  3347889999999999998888775 3  38999999984  454444443

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=97.68  E-value=2.8e-06  Score=66.30  Aligned_cols=46  Identities=24%  Similarity=0.116  Sum_probs=39.4

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC-ceEEccCCccceeccccCCCchhh
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIELLMTSLPPSHIC  117 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~~~~l~n~~~N~~~n  117 (141)
                      +|++|||+.||+|-.++.++..|+ +|+++|.++  ..++.++.|..+|
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~--~a~~~a~~N~~~n  190 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAK--RSRALSLAHFEAN  190 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCT--THHHHHHHHHHHT
T ss_pred             CCCceeecCCCCcHHHHHHHhCCCceEEEecCCH--HHHHHHHHHHHHh
Confidence            789999999999999999999898 899999998  4666666666655

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.67  E-value=1.2e-05  Score=61.66  Aligned_cols=50  Identities=14%  Similarity=0.108  Sum_probs=39.3

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhh-cCCceEEccCCcc
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNR  103 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~-~ga~Vv~tD~~~~  103 (141)
                      |-..+.+++......-+|.+|||+|||.|-+++.+|+ .|++|+++++++.
T Consensus        46 AQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~   96 (285)
T d1kpga_          46 AQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKN   96 (285)
T ss_dssp             HHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHH
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHH
Confidence            4444556666655566889999999999999997554 6889999999985

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=97.64  E-value=4.7e-06  Score=63.20  Aligned_cols=45  Identities=22%  Similarity=0.306  Sum_probs=33.8

Q ss_pred             HHHHHhhh-cccccccEEEecCCCCCchhhhhhc---CCceEEccCCcc
Q 032395           59 AEYVWQQR-YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNR  103 (141)
Q Consensus        59 a~~l~~~~-~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~  103 (141)
                      ..|+.... ..-+..+|||+|||+|..++.+++.   +++|+++|+++.
T Consensus        15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~   63 (281)
T d2gh1a1          15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGET   63 (281)
T ss_dssp             HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHH
T ss_pred             HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchh
Confidence            34454432 2336679999999999999988874   458999999984

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.64  E-value=4.8e-06  Score=63.57  Aligned_cols=46  Identities=24%  Similarity=0.299  Sum_probs=36.2

Q ss_pred             ccccccEEEecCCCCCchhhhhhc-CC--ceEEccCCccceeccccCCCch
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~-ga--~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      .-+|.+|||+|||+|.+++.+|+. |.  +|+..|.++  +.++.+++|..
T Consensus        94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~--~~~~~Ar~n~~  142 (264)
T d1i9ga_          94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRA--DHAEHARRNVS  142 (264)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCH--HHHHHHHHHHH
T ss_pred             CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCH--HHHHHHHHhhh
Confidence            347899999999999999999875 43  899999998  45555555443

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.53  E-value=9.4e-06  Score=60.05  Aligned_cols=50  Identities=12%  Similarity=0.236  Sum_probs=38.8

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-CCceEEccCCcc
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNR  103 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-ga~Vv~tD~~~~  103 (141)
                      .+..+...|.+....-++.+|||+|||||..+..+|++ |.+|++.|.++.
T Consensus        62 s~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~  112 (215)
T d1jg1a_          62 SAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPE  112 (215)
T ss_dssp             CCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHH
T ss_pred             hhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHH
Confidence            33444445555555668899999999999999988875 668999999984

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=97.48  E-value=2e-05  Score=58.93  Aligned_cols=34  Identities=12%  Similarity=0.112  Sum_probs=28.4

Q ss_pred             ccccEEEecCCCCCchhhhhh-cCCceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~-~ga~Vv~tD~~~~  103 (141)
                      ++++|||+|||+|.++..++. .+.+|+++|.++.
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~  127 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKH  127 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHH
T ss_pred             CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHH
Confidence            567999999999999886654 4558999999995

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=9.7e-06  Score=63.41  Aligned_cols=47  Identities=21%  Similarity=0.161  Sum_probs=36.5

Q ss_pred             cccccccEEEecCCCCCchhhhhhc-CC--ceEEccCCccceeccccCCCch
Q 032395           67 YRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIELLMTSLPPSH  115 (141)
Q Consensus        67 ~~~~~~~vLELG~GtGl~~l~~a~~-ga--~Vv~tD~~~~~~~l~n~~~N~~  115 (141)
                      ...+|.+|||+|||+|.+++.+|+. |.  +|++.|+++  +.++.+++|+.
T Consensus        95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~--~~~~~A~~n~~  144 (324)
T d2b25a1          95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRK--DHHDLAKKNYK  144 (324)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSH--HHHHHHHHHHH
T ss_pred             CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCH--HHHHHHHHHHH
Confidence            3458999999999999999998875 43  899999998  34555555443

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.43  E-value=3.7e-05  Score=57.35  Aligned_cols=49  Identities=14%  Similarity=0.117  Sum_probs=38.5

Q ss_pred             HHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCccc-eecc
Q 032395           60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI-ELLM  108 (141)
Q Consensus        60 ~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~-~~l~  108 (141)
                      +.+......-++.+|||+|||+|.++..+++.+++|++.|+++.+ +.++
T Consensus        11 ~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~   60 (235)
T d1qama_          11 DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTE   60 (235)
T ss_dssp             HHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHH
T ss_pred             HHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHH
Confidence            334444444578899999999999999999999999999999853 3443

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=4e-05  Score=57.81  Aligned_cols=45  Identities=13%  Similarity=0.122  Sum_probs=37.0

Q ss_pred             HHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++.+......-++..|||+|||+|.++-.+++.+++|++.|+++.
T Consensus        10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~   54 (252)
T d1qyra_          10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRD   54 (252)
T ss_dssp             HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHH
T ss_pred             HHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccc
Confidence            334444444456889999999999999999999999999999995

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.37  E-value=1.9e-05  Score=58.68  Aligned_cols=58  Identities=16%  Similarity=0.129  Sum_probs=42.8

Q ss_pred             ccceeeeehhH-HHHHHHHhhh---cccccccEEEecCCCCCchhhhhhc-CC--ceEEccCCcc
Q 032395           46 EYGLFVWPCSV-ILAEYVWQQR---YRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNR  103 (141)
Q Consensus        46 ~~g~~~W~as~-~la~~l~~~~---~~~~~~~vLELG~GtGl~~l~~a~~-ga--~Vv~tD~~~~  103 (141)
                      ....+.|+.-. -||..+....   ..-+|.+|||||||+|.....+|+. |.  +|+++|+++.
T Consensus        45 ~~e~R~w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~  109 (227)
T d1g8aa_          45 GEEYRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPR  109 (227)
T ss_dssp             TEEEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHH
T ss_pred             CeeEEEECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHH
Confidence            45788998522 2555555432   2337899999999999999988875 43  8999999995

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=1.9e-05  Score=63.52  Aligned_cols=42  Identities=24%  Similarity=0.177  Sum_probs=33.0

Q ss_pred             HHhhhcccccccEEEecCCCCCchhhhhh-cCC-ceEEccCCcc
Q 032395           62 VWQQRYRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNR  103 (141)
Q Consensus        62 l~~~~~~~~~~~vLELG~GtGl~~l~~a~-~ga-~Vv~tD~~~~  103 (141)
                      +.+....-+|.++||||||+|-+.+.+|+ .++ +|+++|+++.
T Consensus       208 Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~  251 (406)
T d1u2za_         208 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDD  251 (406)
T ss_dssp             HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHH
T ss_pred             HHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHH
Confidence            33333445788999999999999997776 465 8999999994

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.33  E-value=2.9e-05  Score=57.52  Aligned_cols=57  Identities=14%  Similarity=0.224  Sum_probs=38.9

Q ss_pred             hHHHHHHHHhhh--cccccccEEEecCCCCCchhhhhhc----C----CceEEccCCccceeccccCCC
Q 032395           55 SVILAEYVWQQR--YRFSGANVVELGAGTSLPGLVAAKV----G----SNVTLTDDSNRIELLMTSLPP  113 (141)
Q Consensus        55 s~~la~~l~~~~--~~~~~~~vLELG~GtGl~~l~~a~~----g----a~Vv~tD~~~~~~~l~n~~~N  113 (141)
                      +..+...+.+.-  +.-++.+|||+|||||..+.+++++    |    .+|++.|.++  ++++..++|
T Consensus        63 ~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~--~l~~~a~~~  129 (223)
T d1r18a_          63 APHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQA--ELVRRSKAN  129 (223)
T ss_dssp             CHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCH--HHHHHHHHH
T ss_pred             hhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCH--HHHHHHHHh
Confidence            344444444432  4457899999999999998887764    2    3799999998  345544444

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=3.8e-05  Score=59.58  Aligned_cols=45  Identities=13%  Similarity=0.077  Sum_probs=34.0

Q ss_pred             HHHHHhhhcccccccEEEecCCCCCchhhhhhc-CC-ceEEccCCcc
Q 032395           59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNR  103 (141)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-ga-~Vv~tD~~~~  103 (141)
                      ...+......-++.+|||+|||+|-+.+.+|+. ++ +++++|+++.
T Consensus       140 ~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~  186 (328)
T d1nw3a_         140 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADI  186 (328)
T ss_dssp             HHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHH
T ss_pred             HHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHH
Confidence            333444333446789999999999999987764 55 8999999994

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=9.7e-05  Score=55.37  Aligned_cols=34  Identities=18%  Similarity=0.095  Sum_probs=29.6

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      ++.+|||+|||+|..+..+++.+  .+++++|+++.
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~  119 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKV  119 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHH
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHh
Confidence            66799999999999998888774  48999999985

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=2e-05  Score=58.29  Aligned_cols=92  Identities=11%  Similarity=-0.062  Sum_probs=54.9

Q ss_pred             eeeeeeecCCCCCCceehhhhhhcccccceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceE
Q 032395           20 TVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVT   96 (141)
Q Consensus        20 ~~~~~~f~~~~~~~~~~i~i~~~~~~~~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv   96 (141)
                      .+.+|.+..+..++++--.+++..... +....-.+..-+.|+.......+-|+|||+|||+|..++.+|..   +.+|+
T Consensus        10 ~l~~Y~~~~~~~~~~~l~~l~~~t~~~-~~~~~~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~   88 (219)
T d2avda1          10 RLWQYLLSRSMREHPALRSLRLLTLEQ-PQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVV   88 (219)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHHHHHTS-TTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEE
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHhC-CCCCcccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEE
Confidence            344444444433354333444433211 11111234445666666656668899999999999999988764   45999


Q ss_pred             EccCCccceeccccCCCc
Q 032395           97 LTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        97 ~tD~~~~~~~l~n~~~N~  114 (141)
                      .+|.++.  ..+.++.|+
T Consensus        89 tie~~~~--~~~~A~~~~  104 (219)
T d2avda1          89 TCEVDAQ--PPELGRPLW  104 (219)
T ss_dssp             EEESCSH--HHHHHHHHH
T ss_pred             EEeechh--HHHHHHHHH
Confidence            9999984  344444443

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.02  E-value=8e-05  Score=54.57  Aligned_cols=54  Identities=15%  Similarity=0.122  Sum_probs=38.5

Q ss_pred             HHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCccceeccccCCCc
Q 032395           59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      .+++...-...+.++|||+|||+|..++.+|+.   +.+|+.+|.++.  .++.++.|+
T Consensus        45 G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~--~~~~a~~~~  101 (214)
T d2cl5a1          45 GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPD--YAAITQQML  101 (214)
T ss_dssp             HHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHH--HHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHH--HHHHHHHHH
Confidence            334444334447789999999999999988864   459999999983  444444444

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=96.94  E-value=0.00015  Score=53.62  Aligned_cols=34  Identities=15%  Similarity=0.199  Sum_probs=27.9

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      ..++|||+|||+|..++.+++..  .++++.|+++.
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~  115 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGT  115 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTH
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHH
Confidence            34799999999999999888764  38888998653

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=96.93  E-value=0.00031  Score=49.67  Aligned_cols=31  Identities=23%  Similarity=0.204  Sum_probs=24.6

Q ss_pred             cccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        69 ~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .++.+|||+|||+|.....+    ++++++|.++.
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~----~~~~giD~s~~   65 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPL----KIKIGVEPSER   65 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHH----TCCEEEESCHH
T ss_pred             CCCCeEEEECCCCccccccc----ceEEEEeCChh
Confidence            35668999999999776544    46789999985

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.78  E-value=0.00027  Score=51.36  Aligned_cols=33  Identities=18%  Similarity=-0.007  Sum_probs=28.2

Q ss_pred             cccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      +..|||+|||+|-..+.+|+..  ++++++|+.+.
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~   64 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKS   64 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchH
Confidence            4579999999999999888875  48999999874

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.00035  Score=51.07  Aligned_cols=36  Identities=28%  Similarity=0.573  Sum_probs=30.5

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCC--ceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~  103 (141)
                      .+++++++|+|+|.|++|+.+|.+..  +|++.|-...
T Consensus        63 ~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~K  100 (207)
T d1jsxa_          63 YLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGK  100 (207)
T ss_dssp             GCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHH
T ss_pred             hhcCCceeeeeccCCceeeehhhhcccceEEEEecchH
Confidence            34678999999999999999987643  8999998873

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00058  Score=52.01  Aligned_cols=45  Identities=16%  Similarity=0.108  Sum_probs=36.7

Q ss_pred             HHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        59 a~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      ++-+......-++..|||+|+|+|.++..+++.+++|++.++++.
T Consensus        10 ~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~   54 (278)
T d1zq9a1          10 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPR   54 (278)
T ss_dssp             HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHH
T ss_pred             HHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccc
Confidence            334444444446789999999999999999999999999999985

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.74  E-value=0.00085  Score=47.56  Aligned_cols=48  Identities=8%  Similarity=-0.025  Sum_probs=36.0

Q ss_pred             HHHHHHHHhhhcccccccEEEecCCCCCchhhhhh-cC--CceEEccCCcc
Q 032395           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VG--SNVTLTDDSNR  103 (141)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~-~g--a~Vv~tD~~~~  103 (141)
                      ..++++|......-++.+|||.|||+|-..+.+.+ ..  .++++.|+++.
T Consensus         5 ~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~   55 (223)
T d2ih2a1           5 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPK   55 (223)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTT
T ss_pred             HHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHH
Confidence            45778888765555788999999999976554443 22  37999999984

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.52  E-value=0.00016  Score=57.30  Aligned_cols=49  Identities=16%  Similarity=0.053  Sum_probs=40.5

Q ss_pred             ccccccEEEecCCCCCchhhhhh-cCC-ceEEccCCccceeccccCCCchhhh
Q 032395           68 RFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIELLMTSLPPSHICS  118 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~-~ga-~Vv~tD~~~~~~~l~n~~~N~~~n~  118 (141)
                      .+++++|||..||||+-||-+|+ .++ +|++.|+++  ++++.+++|+.+|+
T Consensus        43 ~~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~--~A~~~i~~N~~lN~   93 (375)
T d2dula1          43 ILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISE--DAYELMKRNVMLNF   93 (375)
T ss_dssp             HHCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCH--HHHHHHHHHHHHHC
T ss_pred             HhCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCH--HHHHHHHHHHHhcC
Confidence            34789999999999999996655 566 899999999  57777778877773

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00039  Score=51.62  Aligned_cols=31  Identities=19%  Similarity=0.326  Sum_probs=23.9

Q ss_pred             cEEEecCCCCCchhhhhhc------CC--ceEEccCCcc
Q 032395           73 NVVELGAGTSLPGLVAAKV------GS--NVTLTDDSNR  103 (141)
Q Consensus        73 ~vLELG~GtGl~~l~~a~~------ga--~Vv~tD~~~~  103 (141)
                      +|||+|||+|..+..+++.      +.  +++++|.++.
T Consensus        43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~   81 (280)
T d1jqea_          43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAE   81 (280)
T ss_dssp             EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHH
T ss_pred             eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHH
Confidence            7999999999887755432      22  6899999874

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.36  E-value=0.00072  Score=48.98  Aligned_cols=32  Identities=25%  Similarity=0.067  Sum_probs=27.4

Q ss_pred             ccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        72 ~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      ..|||+|||+|-..+.+|+..  ..++++|+++.
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~   66 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKS   66 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHH
T ss_pred             CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHH
Confidence            479999999999988888874  38999999884

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=96.04  E-value=0.00074  Score=50.10  Aligned_cols=32  Identities=19%  Similarity=0.120  Sum_probs=27.4

Q ss_pred             ccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        72 ~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      ++|||+|||+|..+..+++..  .++++.|+++.
T Consensus        83 ~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~  116 (256)
T d1qzza2          83 RHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGP  116 (256)
T ss_dssp             CEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH
T ss_pred             CEEEEECCCCCHHHHHHHHhhcCcEEEEecChHH
Confidence            689999999999999888763  48999999664

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.71  E-value=0.00099  Score=49.13  Aligned_cols=57  Identities=16%  Similarity=0.102  Sum_probs=40.4

Q ss_pred             HHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc---CCceEEccCCccceeccccCCCc
Q 032395           56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        56 ~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~---ga~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      ..-..|+.......+-++|||+|+++|..++.+|..   +.+|+.+|.++.  ..+.++.|+
T Consensus        45 ~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~--~~~~A~~~~  104 (227)
T d1susa1          45 ADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKE--NYELGLPVI  104 (227)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccch--hHHHHHHHH
Confidence            334455555444557799999999999999988853   459999999983  343444444

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=95.61  E-value=0.0033  Score=46.74  Aligned_cols=34  Identities=26%  Similarity=0.471  Sum_probs=28.6

Q ss_pred             ccccEEEecCCCCCchhhhhhc-CC-ceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~-ga-~Vv~tD~~~~  103 (141)
                      .+++++|+|+|.|++||.+|-+ .. +|++.|-..-
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~K  105 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNK  105 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHH
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHH
Confidence            4578999999999999999875 33 8999998873

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.14  E-value=0.0061  Score=44.98  Aligned_cols=37  Identities=16%  Similarity=0.128  Sum_probs=29.5

Q ss_pred             ccccc-ccEEEecCCCCCchhhhhhcCC--ceEEccCCcc
Q 032395           67 YRFSG-ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNR  103 (141)
Q Consensus        67 ~~~~~-~~vLELG~GtGl~~l~~a~~ga--~Vv~tD~~~~  103 (141)
                      ..|++ ++|+|+|||+|..++.+++.-.  ++++.|+.+.
T Consensus        77 ~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~v  116 (244)
T d1fp1d2          77 TGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQV  116 (244)
T ss_dssp             CTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH
T ss_pred             ccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhh
Confidence            34554 6899999999999998877643  8999999874

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.11  E-value=0.0093  Score=43.62  Aligned_cols=33  Identities=15%  Similarity=-0.040  Sum_probs=28.0

Q ss_pred             cccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        71 ~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      .++|+|+|||+|..++.+++.-  .++++.|+.+.
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v  116 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV  116 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh
Confidence            3689999999999999887763  39999999874

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.02  E-value=0.002  Score=46.17  Aligned_cols=46  Identities=9%  Similarity=-0.006  Sum_probs=33.2

Q ss_pred             HHHHHHhhhcccccccEEEecCCCCCchhhhhhc--CCceEEccCCcc
Q 032395           58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNR  103 (141)
Q Consensus        58 la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~--ga~Vv~tD~~~~  103 (141)
                      |.+-+......-++..+||.+||+|-.+...++.  +.+|++.|.++.
T Consensus        11 ll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~   58 (192)
T d1m6ya2          11 MVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSE   58 (192)
T ss_dssp             THHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHH
T ss_pred             HHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHH
Confidence            3433444334457889999999999877766553  349999999984

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=94.22  E-value=0.0092  Score=37.25  Aligned_cols=47  Identities=23%  Similarity=0.219  Sum_probs=32.6

Q ss_pred             ccccccEEEecCC-CCCchh-hhhhcCCceEEccCCccceeccccCCCc
Q 032395           68 RFSGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNRIELLMTSLPPS  114 (141)
Q Consensus        68 ~~~~~~vLELG~G-tGl~~l-~~a~~ga~Vv~tD~~~~~~~l~n~~~N~  114 (141)
                      .|+||+|+=+|.| ||+... ++++.|++|++.|..+..+..+.+..+.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~   50 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAV   50 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTS
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhcc
Confidence            4789999999988 665332 3456789999999977544444554443

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=93.77  E-value=0.015  Score=42.74  Aligned_cols=36  Identities=19%  Similarity=0.351  Sum_probs=29.2

Q ss_pred             cccc-ccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           68 RFSG-ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~-~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      .|.+ ++|+|+|||+|..++.+++.-  .++++.|+.++
T Consensus        77 ~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v  115 (244)
T d1fp2a2          77 VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQV  115 (244)
T ss_dssp             HHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH
T ss_pred             cccCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHH
Confidence            4454 689999999999999877763  49999999874

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=92.86  E-value=0.047  Score=38.23  Aligned_cols=50  Identities=20%  Similarity=0.111  Sum_probs=35.3

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhc-CC--ceEEccCCcc
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNR  103 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~-ga--~Vv~tD~~~~  103 (141)
                      |++-|.+-..+..-.-++.+||||||+.|-.+-++++. +.  +|++.|+.+.
T Consensus         6 aafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~   58 (180)
T d1ej0a_           6 AWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM   58 (180)
T ss_dssp             HHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred             HHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc
Confidence            45555554433322226789999999999999888764 32  7999999883

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=92.45  E-value=0.056  Score=39.46  Aligned_cols=56  Identities=18%  Similarity=0.036  Sum_probs=39.2

Q ss_pred             cceeeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhh----c--CCceEEccCCcc
Q 032395           47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK----V--GSNVTLTDDSNR  103 (141)
Q Consensus        47 ~g~~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~----~--ga~Vv~tD~~~~  103 (141)
                      -|..+|.....++.|-.- -..++.++|||+|++.|-.+++.+.    .  .++|+++|+++.
T Consensus        58 ~G~p~~k~p~d~~~~~el-i~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~  119 (232)
T d2bm8a1          58 RGLRMLKDPDTQAVYHDM-LWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLS  119 (232)
T ss_dssp             TTEECCSCHHHHHHHHHH-HHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCT
T ss_pred             cceecccCHHHHHHHHHH-HHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChh
Confidence            466777777777666222 2344788999999999976665543    2  248999999863

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=92.15  E-value=0.018  Score=43.30  Aligned_cols=34  Identities=12%  Similarity=0.119  Sum_probs=26.0

Q ss_pred             ccccEEEecCCCCCchhhhhhc----C---CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKV----G---SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~----g---a~Vv~tD~~~~  103 (141)
                      ++.+|||.+||+|...+.+...    .   .++++.|+++.
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~  157 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDL  157 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHH
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHH
Confidence            5678999999999877766431    1   27999999984

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.85  E-value=0.055  Score=36.75  Aligned_cols=37  Identities=24%  Similarity=0.277  Sum_probs=28.2

Q ss_pred             cccccccEEEecCC-CCCchhhhhh-cCCceEEccCCcc
Q 032395           67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNR  103 (141)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~l~~a~-~ga~Vv~tD~~~~  103 (141)
                      ..-+|.+|+-+|+| .|+..+.+++ +|++|+++|.++.
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            34478899999998 6666665554 5889999998874

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.39  E-value=0.038  Score=42.08  Aligned_cols=39  Identities=13%  Similarity=0.219  Sum_probs=31.1

Q ss_pred             ccccEEEecCCCCCchhhhhhcC-C-ceEEccCCccc-eecc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG-S-NVTLTDDSNRI-ELLM  108 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g-a-~Vv~tD~~~~~-~~l~  108 (141)
                      ++..|||+|.|.|.++..+...+ + +|++.+.++.+ +.|+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~   84 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLN   84 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHH
Confidence            56689999999999998887664 3 89999999853 4444

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=90.63  E-value=0.11  Score=38.67  Aligned_cols=50  Identities=20%  Similarity=0.097  Sum_probs=34.6

Q ss_pred             eeeehhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcC--CceEEccC
Q 032395           50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDD  100 (141)
Q Consensus        50 ~~W~as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~  100 (141)
                      .+=.++.-|.+...+. ....+.+|+|||||.|-.+-+++...  ..|.++++
T Consensus        47 ~~SR~~~Kl~~~~~~~-~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i   98 (257)
T d2p41a1          47 AVSRGSAKLRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK   98 (257)
T ss_dssp             CSSTHHHHHHHHHHTT-SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred             CcchHHHHHHHHHHhc-CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEe
Confidence            3446777776655543 33456689999999999999888664  25655555

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=89.34  E-value=0.054  Score=41.15  Aligned_cols=34  Identities=15%  Similarity=0.118  Sum_probs=27.9

Q ss_pred             ccccEEEecCCCCCchhhhhhcC--CceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~g--a~Vv~tD~~~~  103 (141)
                      +.++||.+|.|.|.....+.+..  .+|++.|+++.
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~  112 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGE  112 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHH
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHH
Confidence            45799999999998877776653  38999999994

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.33  E-value=0.12  Score=34.69  Aligned_cols=37  Identities=22%  Similarity=0.189  Sum_probs=27.1

Q ss_pred             cccccccEEEecCC-CCCchhhhhh-cCCceEEccCCcc
Q 032395           67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNR  103 (141)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~l~~a~-~ga~Vv~tD~~~~  103 (141)
                      ..-+|.+|+=+||| .|+..+.+++ +|++|+++|.++.
T Consensus        24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~   62 (166)
T d1llua2          24 NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDA   62 (166)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhh
Confidence            34467888889987 5665555555 4789999999873

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=89.28  E-value=0.12  Score=34.71  Aligned_cols=37  Identities=38%  Similarity=0.416  Sum_probs=27.0

Q ss_pred             cccccccEEEecCC-CCCchhhhhh-cCCceEEccCCcc
Q 032395           67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNR  103 (141)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~l~~a~-~ga~Vv~tD~~~~  103 (141)
                      ..-+|.+||=+||| .|+..+.+++ .|++|+++|.++.
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            34467888889988 5555554444 5789999999874

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=89.25  E-value=0.12  Score=35.42  Aligned_cols=37  Identities=27%  Similarity=0.335  Sum_probs=28.3

Q ss_pred             cccccccEEEecCC-CCCchhhhhh-cCC-ceEEccCCcc
Q 032395           67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNR  103 (141)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~l~~a~-~ga-~Vv~tD~~~~  103 (141)
                      ..-+|.+|+=+||| .|+.++.+++ +|+ +|+++|.++.
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~   63 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPI   63 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHH
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhh
Confidence            34468888889998 4777776666 577 8999999874

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=88.22  E-value=0.079  Score=39.21  Aligned_cols=33  Identities=27%  Similarity=0.412  Sum_probs=30.7

Q ss_pred             ccEEEecCCCCCchhhhhhcCCceEEccCCccc
Q 032395           72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI  104 (141)
Q Consensus        72 ~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~~  104 (141)
                      .+|||+-||.|.-++++|..|++|++++.++.+
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l  122 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVV  122 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHH
T ss_pred             CEEEECCCcccHHHHHHHhCCCEEEEEccCHHH
Confidence            389999999999999999999999999999853

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.87  E-value=0.088  Score=36.83  Aligned_cols=32  Identities=19%  Similarity=0.077  Sum_probs=22.9

Q ss_pred             ccEEEecCCCCC----chhhhhhc----CC--ceEEccCCcc
Q 032395           72 ANVVELGAGTSL----PGLVAAKV----GS--NVTLTDDSNR  103 (141)
Q Consensus        72 ~~vLELG~GtGl----~~l~~a~~----ga--~Vv~tD~~~~  103 (141)
                      .+|+..|||||-    +++.+...    +.  +|++||+++.
T Consensus        26 lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~   67 (193)
T d1af7a2          26 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTE   67 (193)
T ss_dssp             EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHH
T ss_pred             eEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChH
Confidence            489999999997    34333321    22  6999999984

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.74  E-value=0.092  Score=38.99  Aligned_cols=34  Identities=12%  Similarity=0.109  Sum_probs=28.5

Q ss_pred             ccccEEEecCCCCCchhhhhhcCC-ceEEccCCcc
Q 032395           70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNR  103 (141)
Q Consensus        70 ~~~~vLELG~GtGl~~l~~a~~ga-~Vv~tD~~~~  103 (141)
                      +.++||-+|+|.|.....+.+.+. +|++.|+++.
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~  106 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDED  106 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHH
T ss_pred             CCceEEEecCCchHHHHHHHHhCCceEEEecCCHH
Confidence            457999999999988877777665 8999999984

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=86.28  E-value=0.13  Score=35.40  Aligned_cols=37  Identities=19%  Similarity=0.373  Sum_probs=29.4

Q ss_pred             cccccccEEEecCC-CCCchhhhhh-cCC-ceEEccCCcc
Q 032395           67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNR  103 (141)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~l~~a~-~ga-~Vv~tD~~~~  103 (141)
                      ..-+|.+|+=+||| .|+.++.+++ .|+ +|+++|.++.
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            34477899999998 5888887776 577 7999999884

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=86.19  E-value=0.19  Score=34.14  Aligned_cols=36  Identities=42%  Similarity=0.619  Sum_probs=26.9

Q ss_pred             ccccccEEEecCC-CCCchhhhhh-cCC-ceEEccCCcc
Q 032395           68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~G-tGl~~l~~a~-~ga-~Vv~tD~~~~  103 (141)
                      .-+|.+||-+||| .|+..+.+++ .|+ +|+++|.++.
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCCCCEEEEECCCccchhheecccccccccccccccccc
Confidence            3478899999988 4555555555 577 8999999884

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.02  E-value=0.19  Score=35.12  Aligned_cols=37  Identities=27%  Similarity=0.303  Sum_probs=28.1

Q ss_pred             cccccccEEEecCCC-CCchhhhhh-cCC-ceEEccCCcc
Q 032395           67 YRFSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSNR  103 (141)
Q Consensus        67 ~~~~~~~vLELG~Gt-Gl~~l~~a~-~ga-~Vv~tD~~~~  103 (141)
                      ..-+|.+||-+|||. |+..+.+++ .|+ +|+++|.++.
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~   61 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA   61 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccch
Confidence            344788999999984 666666665 466 8999999873

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.83  E-value=0.47  Score=31.27  Aligned_cols=37  Identities=27%  Similarity=0.221  Sum_probs=25.2

Q ss_pred             cccccccEEEecCC-CCCchhhhhh-cCCceEEccCCcc
Q 032395           67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNR  103 (141)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~l~~a~-~ga~Vv~tD~~~~  103 (141)
                      ..-++.+||=.||| .|+..+.+++ .|++|+++|.++.
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~   62 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDE   62 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHH
Confidence            34478888888887 4444443344 4779999998874

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=83.80  E-value=0.19  Score=34.55  Aligned_cols=32  Identities=28%  Similarity=0.381  Sum_probs=24.1

Q ss_pred             cccEEEecCC-CCCch-hhhhhcCCceEEccCCc
Q 032395           71 GANVVELGAG-TSLPG-LVAAKVGSNVTLTDDSN  102 (141)
Q Consensus        71 ~~~vLELG~G-tGl~~-l~~a~~ga~Vv~tD~~~  102 (141)
                      +|+|+=+|+| .|+.+ +.+++.|.+|++.|-.+
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            5889999999 55543 34566788999999876

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=83.77  E-value=0.36  Score=33.58  Aligned_cols=36  Identities=17%  Similarity=0.048  Sum_probs=29.7

Q ss_pred             ccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      .-+|..++|..+|.|-.+..+.+.+.+|++.|.++.
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~   51 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPE   51 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhh
Confidence            447889999999999776666666679999999994

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=83.70  E-value=0.41  Score=32.00  Aligned_cols=37  Identities=24%  Similarity=0.268  Sum_probs=25.6

Q ss_pred             cccccccEEEecCC-CCCchhhhhh-cCCceEEccCCcc
Q 032395           67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNR  103 (141)
Q Consensus        67 ~~~~~~~vLELG~G-tGl~~l~~a~-~ga~Vv~tD~~~~  103 (141)
                      ..-+|.+|+=+||| .|+..+.+++ +|++++++|.++.
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~   65 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA   65 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence            34478888889987 4555554454 5888888887764

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=83.45  E-value=0.23  Score=33.83  Aligned_cols=38  Identities=16%  Similarity=0.302  Sum_probs=28.5

Q ss_pred             hcccccccEEEecCC-CCCchhhhhh-cCC-ceEEccCCcc
Q 032395           66 RYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNR  103 (141)
Q Consensus        66 ~~~~~~~~vLELG~G-tGl~~l~~a~-~ga-~Vv~tD~~~~  103 (141)
                      ...-+|.+|+=+||| .|+.++..++ +|+ +|+++|.++.
T Consensus        23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~   63 (174)
T d1p0fa2          23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD   63 (174)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG
T ss_pred             hCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHH
Confidence            345578899999998 5666665555 577 8999999884

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.68  E-value=0.48  Score=31.67  Aligned_cols=36  Identities=36%  Similarity=0.455  Sum_probs=26.2

Q ss_pred             ccccccEEEecCC-CCCchhhhhh-cCC-ceEEccCCcc
Q 032395           68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~G-tGl~~l~~a~-~ga-~Vv~tD~~~~  103 (141)
                      .-++.+|+=+||| .|+..+.+++ +|+ +|+++|.++.
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT   62 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH
Confidence            3467889999987 5555554444 588 8999999884

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=81.21  E-value=0.28  Score=33.52  Aligned_cols=36  Identities=22%  Similarity=0.340  Sum_probs=27.4

Q ss_pred             ccccccEEEecCC-CCCchhhhhh-cCC-ceEEccCCcc
Q 032395           68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNR  103 (141)
Q Consensus        68 ~~~~~~vLELG~G-tGl~~l~~a~-~ga-~Vv~tD~~~~  103 (141)
                      .-+|..|+=.||| .|+.++..++ +|+ +|+++|.++.
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            4468899999998 6666665555 575 8999999884

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=80.44  E-value=0.78  Score=32.37  Aligned_cols=49  Identities=22%  Similarity=0.255  Sum_probs=39.9

Q ss_pred             hhHHHHHHHHhhhcccccccEEEecCCCCCchhhhhhcCCceEEccCCcc
Q 032395           54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR  103 (141)
Q Consensus        54 as~~la~~l~~~~~~~~~~~vLELG~GtGl~~l~~a~~ga~Vv~tD~~~~  103 (141)
                      -.+.|.+++..... .+|..|||-=||+|-.++++.++|.+.+++|+++.
T Consensus       192 kP~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~  240 (279)
T d1eg2a_         192 KPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPV  240 (279)
T ss_dssp             CCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTH
T ss_pred             cchhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHH
Confidence            34556666655432 37889999999999999999999999999999994