Citrus Sinensis ID: 032401

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSSSSPSASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVALESSADNNSRTSESTGCEGREF
Secondary Structure (PSIPRED)
ccccccccccccEEEEcccccHHccHHHHHHHHccccccccccEEEcccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHccccEEEEEcccHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccccccccccccccccccHHHccccEEEEEHHHHHHHHHHcccccccccHHHHHcccEEEEEEEcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mklqcevcEKAEAEVLCcadeavlcsncdvkvhTANKLSRKHQRFSLLKHnaaaassssssspsasqlpscdicqerngfffcledRAILCRqcdvsihmaspflssHQRFLIGGIKVALessadnnsrtsestgcegref
Flexible Loop (DISEMBL)
MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAaassssssspsasqLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKValessadnnsrtsestgcegref
Low Complexity Region (SEG)
MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNaaaassssssspsasQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVALESSADNNSRTSESTGCEGREF
Disordered region (IsUnstruct)
****CEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKL********************************CDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL*********************
Disordered Region (DISOPRED)
MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLL*********************SCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIG***************************
Disordered Region (DISEMBL)
MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLL*********************SCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVALE********************
Disordered Region (DISPRO)
*KLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLK******************LPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL*********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSSSSPSASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVALESSADNNSRTSESTGCEGREF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	141	2.2.26 [Sep-21-2011]
Q9SYM2	299	Probable salt tolerance-l	yes	no	0.851	0.401	0.582	2e-38
Q96288	248	Salt tolerance protein OS	no	no	0.773	0.439	0.536	3e-32
Q0IGM7	242	B-box zinc finger protein	no	no	0.893	0.520	0.482	8e-31
Q9SID1	238	Salt tolerance-like prote	no	no	0.780	0.462	0.5	2e-29
Q9LQZ7	331	Probable salt tolerance-l	no	no	0.801	0.341	0.516	7e-29
O50055	355	Zinc finger protein CONST	no	no	0.794	0.315	0.345	6e-13
Q9SK53	294	Zinc finger protein CONST	no	no	0.609	0.292	0.339	2e-11
Q96502	347	Zinc finger protein CONST	no	no	0.609	0.247	0.330	9e-11
Q940T9	362	Zinc finger protein CONST	no	no	0.609	0.237	0.321	4e-10
Q39057	373	Zinc finger protein CONST	no	no	0.758	0.286	0.307	1e-09

>sp|Q9SYM2|STHY_ARATH Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/134 (58%), Positives = 91/134 (67%), Gaps = 14/134 (10%)

Query: 1   MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSS 60
           MK+QC VCE AEA VLCCADEA LC  CD K+H ANKL+ KHQR  L             
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPL------------- 47

Query: 61  SSPSASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL 120
            S SAS +P CDICQE +GFFFCL+DRA+LCR+CDV+IH  +P +S+HQRFL+ GIKV L
Sbjct: 48  -SASASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGL 106

Query: 121 ESSADNNSRTSEST 134
           ES     S  S  T
Sbjct: 107 ESIDTGPSTKSSPT 120

Arabidopsis thaliana (taxid: 3702)

>sp|Q96288|STO_ARATH Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1

 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/123 (53%), Positives = 85/123 (69%), Gaps = 14/123 (11%)

Query: 1   MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSS 60
           MK+QC+VCEKA A V+CCADEA LC  CD+++H ANKL+ KHQR  L             
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHL------------- 47

Query: 61  SSPSASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL 120
            +  +++ P CDICQE+  F FC+EDRA+LCR CD SIH+A+   ++HQRFL  GIKVAL
Sbjct: 48  -NSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVAL 106

Query: 121 ESS 123
            S+
Sbjct: 107 TST 109

May act as a transcription factor in the salt-stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0IGM7|BBX20_ARATH B-box zinc finger protein 20 OS=Arabidopsis thaliana GN=BBX20 PE=1 SV=1

 Score =  132 bits (331), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 67/139 (48%), Positives = 81/139 (58%), Gaps = 13/139 (9%)

Query: 1   MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSS 60
           MK+ C VC+K EA V CCADEA LC+ CD  VH ANKL+ KH RFSL             
Sbjct: 1   MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSL------------- 47

Query: 61  SSPSASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL 120
           +SP+    P CDIC ER    FC EDRAILCR+CD+ IH A+     H RFL+ G+K++ 
Sbjct: 48  TSPTFKDAPLCDICGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISA 107

Query: 121 ESSADNNSRTSESTGCEGR 139
             SA   +  S S    GR
Sbjct: 108 SPSAYPRASNSNSAAAFGR 126

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SID1|STH_ARATH Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2

 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/124 (50%), Positives = 82/124 (66%), Gaps = 14/124 (11%)

Query: 1   MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSS 60
           MK+QC+VCEKA A ++CCADEA LC+ CDV+VH ANKL+ KHQR  L             
Sbjct: 1   MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFL------------- 47

Query: 61  SSPSASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL 120
               +++ P CDIC E+  F FC+EDRA+LCR CD + H  +   ++HQRFL  GI+VAL
Sbjct: 48  -DSLSTKFPPCDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVAL 106

Query: 121 ESSA 124
            S++
Sbjct: 107 SSTS 110

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQZ7|STHX_ARATH Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1

 Score =  125 bits (314), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 64/124 (51%), Positives = 81/124 (65%), Gaps = 11/124 (8%)

Query: 1   MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSS 60
           MK++C+VC+K EA V C ADEA LC  CD +VH ANKL+ KH RFSLL       SSS++
Sbjct: 1   MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLL-----YPSSSNT 55

Query: 61  SSPSASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL 120
           SSP       CDICQ++    FC +DRAILC+ CD SIH A+     H RFL+ G+K++ 
Sbjct: 56  SSPL------CDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSA 109

Query: 121 ESSA 124
            SS 
Sbjct: 110 TSSV 113

Arabidopsis thaliana (taxid: 3702)

>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/136 (34%), Positives = 62/136 (45%), Gaps = 24/136 (17%)

Query: 5   CEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSSSSPS 64
           C+ C  A   V C AD A LCS+CD +VH AN+L+ +H+R  +                 
Sbjct: 12  CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV----------------- 54

Query: 65  ASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGI-KVALESS 123
                 C  C+     FFC  D A LC  CD  IH A+P    HQR  I  I + +  S+
Sbjct: 55  ------CQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSST 108

Query: 124 ADNNSRTSESTGCEGR 139
           A N+S  +  T  E R
Sbjct: 109 ATNHSCETTVTDPENR 124

Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 23/109 (21%)

Query: 5   CEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSSSSPS 64
           C+ C+   A + C AD A LC +CD K+HTANKL+ +H+R  L                 
Sbjct: 8   CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL----------------- 50

Query: 65  ASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLI 113
                 C++C++      C  D A LC  CD  IH A+P    H+R  I
Sbjct: 51  ------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPI 93

Arabidopsis thaliana (taxid: 3702)

>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 47/109 (43%), Gaps = 23/109 (21%)

Query: 5   CEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSSSSPS 64
           C+ C  A   V C AD A LC+ CD +VH AN+++ +H+R  +                 
Sbjct: 16  CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRV----------------- 58

Query: 65  ASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLI 113
                 C  C+     F C  D A LC  CD  IH A+P    HQR  I
Sbjct: 59  ------CQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPI 101

Putative transcription factor. Does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 23/109 (21%)

Query: 5   CEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSSSSPS 64
           C+ C+ A A + C  D A LC +CD KVH ANKL+ +H R  +                 
Sbjct: 6   CDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWM----------------- 48

Query: 65  ASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLI 113
                 C++C++      C  D A LC  CD  IH A+P    H+R  +
Sbjct: 49  ------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPV 91

Arabidopsis thaliana (taxid: 3702)

>sp|Q39057|CONS_ARATH Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 54/130 (41%), Gaps = 23/130 (17%)

Query: 5   CEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSSSSPS 64
           C+ C      V C AD A LC +CD +VH+AN+++ +H+R  +                 
Sbjct: 20  CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRV----------------- 62

Query: 65  ASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVALESSA 124
                 C+ C+     F C  D A LC  CD  +H A+P    HQR  I  I     SS 
Sbjct: 63  ------CESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSM 116

Query: 125 DNNSRTSEST 134
                 SE T
Sbjct: 117 TTTHHQSEKT 126

Putative transcription factor that acts in the long day flowering pathway and may mediate between the circadian clock and the control of flowering. Plays a role in the regulation of flowering time by acting on 'SUPPRESSOR OF OVEREXPRESSION OF CO1', 'TERMINAL FLOWER 1' and 'FLOWERING LOCUS T'. Also regulates P5CS2 and ACS10 (involved in proline and ethylene biosynthesis, respectively).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
225459898	205	PREDICTED: probable salt tolerance-like	0.900	0.619	0.588	7e-40
225461798	293	PREDICTED: probable salt tolerance-like	0.886	0.426	0.553	7e-37
18412037	299	light-regulated zinc finger protein 1 [A	0.851	0.401	0.582	1e-36
4836873	327	Highly similar to rice zinc finger prote	0.851	0.366	0.582	1e-36
334183994	319	light-regulated zinc finger protein 1 [A	0.851	0.376	0.582	1e-36
255567122	290	zinc finger protein, putative [Ricinus c	0.773	0.375	0.601	4e-36
297839731	290	zinc finger (B-box type) family protein	0.851	0.413	0.582	5e-36
356544134	374	PREDICTED: probable salt tolerance-like	0.829	0.312	0.572	8e-36
224114744	298	predicted protein [Populus trichocarpa]	0.773	0.365	0.617	1e-35
312281709	294	unnamed protein product [Thellungiella h	0.773	0.370	0.601	1e-35

>gi|225459898|ref|XP_002263859.1| PREDICTED: probable salt tolerance-like protein At1g78600 [Vitis vinifera] gi|147807230|emb|CAN72879.1| hypothetical protein VITISV_009478 [Vitis vinifera] gi|297734725|emb|CBI16959.3| unnamed protein product [Vitis vinifera]

 Score =  168 bits (425), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 83/141 (58%), Positives = 101/141 (71%), Gaps = 14/141 (9%)

Query: 1   MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSS 60
           MK+ C++C   EAEVLC ADEAVLC  CD +VHTANKLS+KHQR  LLKH          
Sbjct: 1   MKIPCDICGNVEAEVLCSADEAVLCWGCDERVHTANKLSQKHQRVPLLKH---------P 51

Query: 61  SSPSASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL 120
            S S+SQLP CDICQE++G+FFCLEDRA+LC+ CDVS H  + ++SSH+RF+I GIKVAL
Sbjct: 52  PSTSSSQLPPCDICQEKSGYFFCLEDRALLCKNCDVSTHSTNSYVSSHRRFVISGIKVAL 111

Query: 121 ESSADNNSRTSESTGCEGREF 141
           + S  NN R    TGC  R +
Sbjct: 112 Q-SVTNNYR----TGCNSRTY 127

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461798|ref|XP_002283666.1| PREDICTED: probable salt tolerance-like protein At1g78600 [Vitis vinifera] gi|302142816|emb|CBI20111.3| unnamed protein product [Vitis vinifera]

 Score =  158 bits (400), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 77/139 (55%), Positives = 95/139 (68%), Gaps = 14/139 (10%)

Query: 1   MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSS 60
           MK+QC VCE AEA VLCCADEA LC  CD KVH ANKL+ KHQR  L             
Sbjct: 1   MKIQCNVCEAAEANVLCCADEAALCWACDEKVHAANKLASKHQRVPL------------- 47

Query: 61  SSPSASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL 120
            S S+SQ+P CDICQE  G+FFCLEDRA+LCR+CDVSIH A+ ++S+HQRFL+ G+KV L
Sbjct: 48  -STSSSQMPKCDICQETVGYFFCLEDRALLCRKCDVSIHTANTYVSAHQRFLLTGVKVGL 106

Query: 121 ESSADNNSRTSESTGCEGR 139
           E +   +S +   +   G+
Sbjct: 107 EPTQPGSSSSMGKSNLVGK 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412037|ref|NP_565183.1| light-regulated zinc finger protein 1 [Arabidopsis thaliana] gi|52788299|sp|Q9SYM2.2|STHY_ARATH RecName: Full=Probable salt tolerance-like protein At1g78600 gi|20260418|gb|AAM13107.1| highly similar to rice zinc finger protein [Arabidopsis thaliana] gi|21592988|gb|AAM64937.1| zinc finger protein, putative [Arabidopsis thaliana] gi|30023798|gb|AAP13432.1| At1g78600 [Arabidopsis thaliana] gi|332198004|gb|AEE36125.1| light-regulated zinc finger protein 1 [Arabidopsis thaliana]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 78/134 (58%), Positives = 91/134 (67%), Gaps = 14/134 (10%)

Query: 1   MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSS 60
           MK+QC VCE AEA VLCCADEA LC  CD K+H ANKL+ KHQR  L             
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPL------------- 47

Query: 61  SSPSASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL 120
            S SAS +P CDICQE +GFFFCL+DRA+LCR+CDV+IH  +P +S+HQRFL+ GIKV L
Sbjct: 48  -SASASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGL 106

Query: 121 ESSADNNSRTSEST 134
           ES     S  S  T
Sbjct: 107 ESIDTGPSTKSSPT 120

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4836873|gb|AAD30576.1|AC007260_7 Highly similar to rice zinc finger protein [Arabidopsis thaliana]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 78/134 (58%), Positives = 91/134 (67%), Gaps = 14/134 (10%)

Query: 1   MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSS 60
           MK+QC VCE AEA VLCCADEA LC  CD K+H ANKL+ KHQR  L             
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPL------------- 47

Query: 61  SSPSASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL 120
            S SAS +P CDICQE +GFFFCL+DRA+LCR+CDV+IH  +P +S+HQRFL+ GIKV L
Sbjct: 48  -SASASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGL 106

Query: 121 ESSADNNSRTSEST 134
           ES     S  S  T
Sbjct: 107 ESIDTGPSTKSSPT 120

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183994|ref|NP_001185428.1| light-regulated zinc finger protein 1 [Arabidopsis thaliana] gi|332198005|gb|AEE36126.1| light-regulated zinc finger protein 1 [Arabidopsis thaliana]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 78/134 (58%), Positives = 91/134 (67%), Gaps = 14/134 (10%)

Query: 1   MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSS 60
           MK+QC VCE AEA VLCCADEA LC  CD K+H ANKL+ KHQR  L             
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPL------------- 47

Query: 61  SSPSASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL 120
            S SAS +P CDICQE +GFFFCL+DRA+LCR+CDV+IH  +P +S+HQRFL+ GIKV L
Sbjct: 48  -SASASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGL 106

Query: 121 ESSADNNSRTSEST 134
           ES     S  S  T
Sbjct: 107 ESIDTGPSTKSSPT 120

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567122|ref|XP_002524543.1| zinc finger protein, putative [Ricinus communis] gi|223536217|gb|EEF37870.1| zinc finger protein, putative [Ricinus communis]

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 74/123 (60%), Positives = 88/123 (71%), Gaps = 14/123 (11%)

Query: 1   MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSS 60
           MK+QC VCE AEA VLCCADEA LC  CD KVH ANKL+ KHQR  L             
Sbjct: 1   MKIQCNVCEAAEANVLCCADEAALCWGCDEKVHAANKLASKHQRVPL------------- 47

Query: 61  SSPSASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL 120
            S S+S +P+CDICQE  GFFFCLEDRA+LCR+CDV+IH A+ ++S HQRFL+ G+KV L
Sbjct: 48  -STSSSHIPNCDICQETAGFFFCLEDRALLCRKCDVAIHTANAYVSGHQRFLLTGVKVGL 106

Query: 121 ESS 123
           E +
Sbjct: 107 EPT 109

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839731|ref|XP_002887747.1| zinc finger (B-box type) family protein [Arabidopsis lyrata subsp. lyrata] gi|297333588|gb|EFH64006.1| zinc finger (B-box type) family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 78/134 (58%), Positives = 91/134 (67%), Gaps = 14/134 (10%)

Query: 1   MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSS 60
           MK+QC VCE AEA VLCCADEA LC  CD KVH ANKL+ KHQR  L             
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKVHAANKLAGKHQRVPL------------- 47

Query: 61  SSPSASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL 120
            S S+S +P CDICQE +GFFFCL+DRA+LCR+CDV+IH  +P +S+HQRFL+ GIKV L
Sbjct: 48  -SVSSSSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGL 106

Query: 121 ESSADNNSRTSEST 134
           ES     S  S  T
Sbjct: 107 ESIDTGPSTKSSPT 120

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544134|ref|XP_003540510.1| PREDICTED: probable salt tolerance-like protein At1g78600-like isoform 1 [Glycine max]

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 75/131 (57%), Positives = 92/131 (70%), Gaps = 14/131 (10%)

Query: 1   MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSS 60
           MK+QC VCE AEA+VLCCADEA LC  CD KVH ANKL+ KHQR  L             
Sbjct: 83  MKIQCNVCEAAEAKVLCCADEAGLCWECDEKVHAANKLASKHQRVPL------------- 129

Query: 61  SSPSASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL 120
            S S+S +P CDICQE  G+FFCLEDRA+LCR+CDV+IH A+ ++S HQRFL+ G++V L
Sbjct: 130 -STSSSHMPKCDICQEALGYFFCLEDRALLCRKCDVAIHTANAYVSGHQRFLLTGVRVGL 188

Query: 121 ESSADNNSRTS 131
           E++    S TS
Sbjct: 189 EATDPGASSTS 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114744|ref|XP_002316844.1| predicted protein [Populus trichocarpa] gi|222859909|gb|EEE97456.1| predicted protein [Populus trichocarpa]

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/123 (61%), Positives = 89/123 (72%), Gaps = 14/123 (11%)

Query: 1   MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSS 60
           MK+QC VCE AEA+VLCCADEA LC  CD KVH ANKL+ KHQR  L           S+
Sbjct: 1   MKIQCNVCEAAEAKVLCCADEAALCWTCDEKVHAANKLASKHQRIPL-----------ST 49

Query: 61  SSPSASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL 120
           SSP   Q+P CDICQE  GFFFCLEDRA+LCR+CDV+IH A+  +S HQRFL+ G+KV L
Sbjct: 50  SSP---QMPKCDICQETAGFFFCLEDRALLCRKCDVAIHTANTHVSVHQRFLLTGVKVGL 106

Query: 121 ESS 123
           E +
Sbjct: 107 EPT 109

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312281709|dbj|BAJ33720.1| unnamed protein product [Thellungiella halophila]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 74/123 (60%), Positives = 89/123 (72%), Gaps = 14/123 (11%)

Query: 1   MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSS 60
           MK+QC VCE AEA VLCCADEA LC  CD KVH ANKL+ KHQR  L             
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKVHAANKLAGKHQRVPL------------- 47

Query: 61  SSPSASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL 120
            S S+S +P CDICQE +GFFFCL+DRA+LCR+CDV+IH  +P +S+HQRFL+ GI+V L
Sbjct: 48  -SVSSSSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIRVGL 106

Query: 121 ESS 123
           ES+
Sbjct: 107 EST 109

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
TAIR|locus:2122759	162	bbx23 "B-box domain protein 23	0.879	0.765	0.532	1.5e-33
TAIR|locus:2198841	248	STO "SALT TOLERANCE" [Arabidop	0.773	0.439	0.536	2.6e-31
TAIR|locus:2061330	238	STH "salt tolerance homologue"	0.794	0.470	0.5	3.4e-29
TAIR|locus:2120207	242	BZS1 "BZS1" [Arabidopsis thali	0.893	0.520	0.467	1.2e-28
TAIR|locus:2005624	331	BBX21 "B-box domain protein 21	0.921	0.392	0.439	3.9e-28
TAIR|locus:2143221	355	COL1 "CONSTANS-like 1" [Arabid	0.312	0.123	0.5	6.6e-08
TAIR|locus:2050130	172	BBX18 "B-box domain protein 18	0.851	0.697	0.356	1.8e-16
TAIR|locus:2047246	294	COL3 "CONSTANS-like 3" [Arabid	0.283	0.136	0.6	1.2e-08
TAIR|locus:2074587	347	COL2 "CONSTANS-like 2" [Arabid	0.312	0.126	0.522	3.8e-08
UNIPROTKB|Q9FRZ7	342	Hd1 "Hd1 protein" [Oryza sativ	0.283	0.116	0.6	1.7e-08

TAIR|locus:2122759 bbx23 "B-box domain protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 73/137 (53%), Positives = 88/137 (64%)

Query:     1 MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNXXXXXXXXX 60
             MK+QCEVCEKAEAEVLCC+DEAVLC  CD+KVH ANKL ++H R +L K           
Sbjct:     1 MKIQCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEANKLFQRHHRVALQKDAASATTASGA 60

Query:    61 XXXXXXQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL 120
                     P CDICQER G+FFCLEDRA+LC  CD +IH  +    SHQRFL+ G++V+ 
Sbjct:    61 --------PLCDICQERKGYFFCLEDRAMLCNDCDEAIHTCN----SHQRFLLSGVQVS- 107

Query:   121 ESSADNNSRTSESTGCE 137
             + S   NS  S S   E
Sbjct:   108 DQSLTENSECSTSFSSE 124

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2198841 STO "SALT TOLERANCE" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 66/123 (53%), Positives = 82/123 (66%)

Query:     1 MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNXXXXXXXXX 60
             MK+QC+VCEKA A V+CCADEA LC  CD+++H ANKL+ KHQR  L             
Sbjct:     1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHL------------- 47

Query:    61 XXXXXXQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL 120
                   + P CDICQE+  F FC+EDRA+LCR CD SIH+A+   ++HQRFL  GIKVAL
Sbjct:    48 -NSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVAL 106

Query:   121 ESS 123
              S+
Sbjct:   107 TST 109

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009640 "photomorphogenesis" evidence=IGI

GO:0080167 "response to karrikin" evidence=IEP

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=IGI;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2061330 STH "salt tolerance homologue" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 63/126 (50%), Positives = 81/126 (64%)

Query:     1 MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNXXXXXXXXX 60
             MK+QC+VCEKA A ++CCADEA LC+ CDV+VH ANKL+ KHQR  L             
Sbjct:     1 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFL------------- 47

Query:    61 XXXXXXQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL 120
                   + P CDIC E+  F FC+EDRA+LCR CD + H  +   ++HQRFL  GI+VAL
Sbjct:    48 -DSLSTKFPPCDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVAL 106

Query:   121 ESSADN 126
              S++ N
Sbjct:   107 SSTSCN 112

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0019904 "protein domain specific binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2120207 BZS1 "BZS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 65/139 (46%), Positives = 77/139 (55%)

Query:     1 MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNXXXXXXXXX 60
             MK+ C VC+K EA V CCADEA LC+ CD  VH ANKL+ KH RFSL             
Sbjct:     1 MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSL------------- 47

Query:    61 XXXXXXQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL 120
                     P CDIC ER    FC EDRAILCR+CD+ IH A+     H RFL+ G+K++ 
Sbjct:    48 TSPTFKDAPLCDICGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISA 107

Query:   121 ESSADNNSRTSESTGCEGR 139
               SA   +  S S    GR
Sbjct:   108 SPSAYPRASNSNSAAAFGR 126

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP

TAIR|locus:2005624 BBX21 "B-box domain protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 62/141 (43%), Positives = 82/141 (58%)

Query:     1 MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNXXXXXXXXX 60
             MK++C+VC+K EA V C ADEA LC  CD +VH ANKL+ KH RFSLL  +         
Sbjct:     1 MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSS--- 57

Query:    61 XXXXXXQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL 120
                     P CDICQ++    FC +DRAILC+ CD SIH A+     H RFL+ G+K++ 
Sbjct:    58 --------PLCDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSA 109

Query:   121 ESSADNNSRTSESTGCEGREF 141
              SS    +  S S+    ++F
Sbjct:   110 TSSVYKPTSKSSSSSSSNQDF 130

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009641 "shade avoidance" evidence=IGI;IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

TAIR|locus:2143221 COL1 "CONSTANS-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 6.6e-08, P = 6.6e-08
 Identities = 22/44 (50%), Positives = 31/44 (70%)

Query:     5 CEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLL 48
             C+ CE+A A   C AD A LC+ CD ++H+AN L+R+HQR  +L
Sbjct:    55 CQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPIL 98

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2050130 BBX18 "B-box domain protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 52/146 (35%), Positives = 68/146 (46%)

Query:     1 MKLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNXXXXXXXXX 60
             M++ C+ CE A A V C ADEA LC +CD KVH  NKL+ +H R  L   +         
Sbjct:     1 MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNA------- 53

Query:    61 XXXXXXQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASP-----FLSSHQRFLIGG 115
                     PSCDIC+    FF+C  D + LC QCD+ +H+        FL   QR    G
Sbjct:    54 --------PSCDICENAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHRRFLLLRQRIEFPG 105

Query:   116 IK------VALESSADNNSRTSESTG 135
              K      + L     ++ R  ES G
Sbjct:   106 DKPNHADQLGLRCQKASSGRGQESNG 131

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2047246 COL3 "CONSTANS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 24/40 (60%), Positives = 29/40 (72%)

Query:     5 CEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQR 44
             CEVCE+A A V C AD A LC  CD  +H+AN LSR+H+R
Sbjct:    51 CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHER 90

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

TAIR|locus:2074587 COL2 "CONSTANS-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query:     5 CEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLL 48
             C+ CE A A  LC AD A LC+ CD ++H+AN L+R+HQR  +L
Sbjct:    59 CQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPIL 102

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

UNIPROTKB|Q9FRZ7 Hd1 "Hd1 protein" [Oryza sativa Indica Group (taxid:39946)]

 Score = 135 (52.6 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 24/40 (60%), Positives = 30/40 (75%)

Query:     5 CEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQR 44
             CE CE+A A + C AD A LC  CDV+VH+AN L+R+HQR
Sbjct:    78 CEACEQAPAALACRADAAALCVACDVQVHSANPLARRHQR 117

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00031947001 SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_61, whole genome shotgun sequence); (205 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	141
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	7e-07
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	2e-06
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	5e-05
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	2e-04

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 43.1 bits (102), Expect = 7e-07
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 6/45 (13%)

Query: 69  PSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLI 113
           P CD   +    FFC E  A+LCR CD + H        H   L+
Sbjct: 4   PKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42

Length = 42

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 41.9 bits (99), Expect = 2e-06
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 69  PSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLI 113
             CD   E     FC  DRA+LC  CD+S+H      S H+R  +
Sbjct: 1   RLCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 38.1 bits (89), Expect = 5e-05
 Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 6/46 (13%)

Query: 2  KLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSL 47
            +C+      AE  C    A+LC  CD   H      R H    L
Sbjct: 3  APKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42

Length = 42

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 36.1 bits (84), Expect = 2e-04
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 5  CEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSL 47
          C+   +    + C  D A+LC +CD+ VH        H+R  L
Sbjct: 3  CDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	98.26
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	98.2
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.88
smart00336	42	BBOX B-Box-type zinc finger.	97.79
KOG4367	699	consensus Predicted Zn-finger protein [Function un	97.71
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	97.61
smart00336	42	BBOX B-Box-type zinc finger.	97.37

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=98.26  E-value=7e-07  Score=51.91  Aligned_cols=38  Identities=42%  Similarity=0.813  Sum_probs=34.4

Q ss_pred             CccccCCcceEEEccCccccccccccccccCCCCCcCCCcceee
Q 032401           70 SCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLI  113 (141)
Q Consensus        70 ~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~~H~an~~~~~H~R~pl  113 (141)
                      .|+.|+.+++.+||.+|...||..|+...|.      .|.++||
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            4999998899999999999999999998875      8888876

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.20  E-value=9.4e-07  Score=52.58  Aligned_cols=40  Identities=33%  Similarity=0.532  Sum_probs=34.7

Q ss_pred             CCCccccCCcceEEEccCccccccccccccccCCCCCcCCCcceee
Q 032401           68 LPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLI  113 (141)
Q Consensus        68 ~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~~H~an~~~~~H~R~pl  113 (141)
                      ...|+.|+..++.+||.+|..+||..|....|.      +|..+||
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~------~H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHK------GHKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTT------TSEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCC------CCEEeEC
Confidence            456999999889999999999999999999986      4888876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.88  E-value=1.2e-05  Score=46.53  Aligned_cols=39  Identities=33%  Similarity=0.766  Sum_probs=33.8

Q ss_pred             CcccccCCCceEEEeeCCCcccchhhhhccccCCCCCCCeeEEEe
Q 032401            3 LQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSL   47 (141)
Q Consensus         3 ~~C~~C~~~~A~~~C~~d~a~LC~~CD~~~H~an~l~~~H~Rv~l   47 (141)
                      ..|+.++++++.+||..|...+|..|+...|.      .|.++||
T Consensus         1 ~~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           1 RLCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            36889988899999999999999999977664      6888875

>smart00336 BBOX B-Box-type zinc finger

Probab=97.79  E-value=2.1e-05  Score=46.13  Aligned_cols=39  Identities=41%  Similarity=0.819  Sum_probs=33.8

Q ss_pred             CCccccCCcceEEEccCccccccccccccccCCCCCcCCCcceee
Q 032401           69 PSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLI  113 (141)
Q Consensus        69 ~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~~H~an~~~~~H~R~pl  113 (141)
                      ..|+.|+..++.+||.+|...||..|....|      .+|.+.||
T Consensus         4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        4 PKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            3599999899999999999999999998866      37887765

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=97.71  E-value=8e-06  Score=71.44  Aligned_cols=91  Identities=24%  Similarity=0.503  Sum_probs=75.6

Q ss_pred             cccccCCC--ceEEEeeCCCcccchhhhhccccCCCCCCCeeEEEecccchhcccCCCCCCCCCCCCCCccccCCcceEE
Q 032401            4 QCEVCEKA--EAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSLLKHNAAAASSSSSSSPSASQLPSCDICQERNGFF   81 (141)
Q Consensus         4 ~C~~C~~~--~A~~~C~~d~a~LC~~CD~~~H~an~l~~~H~Rv~l~~~~~~~~~~~~~~~~~~~~~~~Cd~C~~~~a~~   81 (141)
                      .|.+|+++  .|+|+|..+..++|.-|..+.|-+-..+.+|.-+|-.+       +..+..-.+.+...|..|+-+...+
T Consensus       164 kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~-------grvs~~~s~r~~~~ct~h~~e~~sm  236 (699)
T KOG4367|consen  164 KCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQ-------GRVSRRLSPRKVSTCTDHELENHSM  236 (699)
T ss_pred             hhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCccc-------CceeeccchhhhhhccCCCCCCceE
Confidence            58899885  58999999999999999999999888889998777522       2333445667778899999999999


Q ss_pred             EccCccccccccccccccCC
Q 032401           82 FCLEDRAILCRQCDVSIHMA  101 (141)
Q Consensus        82 ~C~~d~~~LC~~Cd~~~H~a  101 (141)
                      ||.+|.+++|..|-..+..+
T Consensus       237 yc~~ck~pvc~~clee~khs  256 (699)
T KOG4367|consen  237 YCVQCKMPVCYQCLEEGKHS  256 (699)
T ss_pred             EEEecCChHHHHHHHhhccc
Confidence            99999999999998776333

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.61  E-value=8.1e-05  Score=44.09  Aligned_cols=40  Identities=23%  Similarity=0.506  Sum_probs=34.6

Q ss_pred             CCcccccCCCceEEEeeCCCcccchhhhhccccCCCCCCCeeEEEe
Q 032401            2 KLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSL   47 (141)
Q Consensus         2 ~~~C~~C~~~~A~~~C~~d~a~LC~~CD~~~H~an~l~~~H~Rv~l   47 (141)
                      ...|+.+.+.++.+||..|...+|..|....|..      |..+||
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            3679999998899999999999999999988864      888876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>smart00336 BBOX B-Box-type zinc finger

Probab=97.37  E-value=0.00017  Score=42.18  Aligned_cols=40  Identities=33%  Similarity=0.583  Sum_probs=33.6

Q ss_pred             CCcccccCCCceEEEeeCCCcccchhhhhccccCCCCCCCeeEEEe
Q 032401            2 KLQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSL   47 (141)
Q Consensus         2 ~~~C~~C~~~~A~~~C~~d~a~LC~~CD~~~H~an~l~~~H~Rv~l   47 (141)
                      ...|..+++.++.+||..|...+|..|....|      +.|.+++|
T Consensus         3 ~~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        3 PPKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CCcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            35789998889999999999999999997655      56877765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	141
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	99.32
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	97.58
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	97.53
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	97.49
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	97.46
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	97.17
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	96.99
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	96.92
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	96.57
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	95.94
2egm_A	57	Tripartite motif-containing protein 41; ZF-B_BOX d	95.72
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	95.58
2d8v_A	67	Zinc finger FYVE domain-containing protein 19; zfy	94.52
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	92.7
2d8v_A	67	Zinc finger FYVE domain-containing protein 19; zfy	88.01
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	85.61
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	82.32
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	82.06
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	80.32

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=99.32  E-value=1.3e-12  Score=90.13  Aligned_cols=93  Identities=22%  Similarity=0.467  Sum_probs=76.0

Q ss_pred             CCcccccCC---CceEEEeeCCCcccchhhhhccccCCCCCCCeeEE-EecccchhcccCCCCCCCCCCCCCCccccCCc
Q 032401            2 KLQCEVCEK---AEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRF-SLLKHNAAAASSSSSSSPSASQLPSCDICQER   77 (141)
Q Consensus         2 ~~~C~~C~~---~~A~~~C~~d~a~LC~~CD~~~H~an~l~~~H~Rv-~l~~~~~~~~~~~~~~~~~~~~~~~Cd~C~~~   77 (141)
                      ...|++|.+   .+|+.+|..+.+.||..|...+|..++.+++|..+ |+.              ........|+.|+..
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~--------------~~~~~~~~C~~H~~e   68 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIP--------------DSHIRGLMCLEHEDE   68 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCC--------------SCCSSCCCCSSCSSS
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeecccc--------------ccCccCCcCcCcCCC
Confidence            367999984   68999999999999999999889988888899876 441              112244579999989


Q ss_pred             ceEEEccCccccccccccc-cccCCCCCcCCCcceeee
Q 032401           78 NGFFFCLEDRAILCRQCDV-SIHMASPFLSSHQRFLIG  114 (141)
Q Consensus        78 ~a~~~C~~d~~~LC~~Cd~-~~H~an~~~~~H~R~pl~  114 (141)
                      +..+||..|..++|..|.. ..|.      .|..+||.
T Consensus        69 ~l~~fC~~~~~~iC~~C~~~~~H~------~H~~~~l~  100 (101)
T 2jun_A           69 KVNMYCVTDDQLICALCKLVGRHR------DHQVAALS  100 (101)
T ss_dssp             CCCEEETTTTEEECHHHHHHTTTS------SSCBCCCC
T ss_pred             cceEECCCCCCccchhcCCCCCcC------CCCeecCC
Confidence            9999999999999999987 5674      67777765

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=97.58  E-value=5.6e-05  Score=46.07  Aligned_cols=45  Identities=22%  Similarity=0.459  Sum_probs=37.2

Q ss_pred             CCCCccccCCcceEEEccCccccccccccc-cccCCCCCcCCCcceeeecccc
Q 032401           67 QLPSCDICQERNGFFFCLEDRAILCRQCDV-SIHMASPFLSSHQRFLIGGIKV  118 (141)
Q Consensus        67 ~~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~-~~H~an~~~~~H~R~pl~~~~~  118 (141)
                      ....|+.|+ ++..+||..|..++|..|.. ..|.      .|..+||.++..
T Consensus         7 ~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~~   52 (53)
T 2did_A            7 GESLCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPLSGPSS   52 (53)
T ss_dssp             SCCBCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEECCCTTT
T ss_pred             CCCcChhhC-CeeeEEeCCCCeEEeccccCCCCCC------CCcEeeHHHHhc
Confidence            345699998 89999999999999999987 4463      788888887653

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=97.53  E-value=4.5e-05  Score=47.97  Aligned_cols=50  Identities=20%  Similarity=0.370  Sum_probs=40.3

Q ss_pred             CCCCCCCccccCCcceEEEccCcccccccccccc-ccCCCCCcCCCcceeeeccccc
Q 032401           64 SASQLPSCDICQERNGFFFCLEDRAILCRQCDVS-IHMASPFLSSHQRFLIGGIKVA  119 (141)
Q Consensus        64 ~~~~~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~-~H~an~~~~~H~R~pl~~~~~~  119 (141)
                      +......|+.|+..+..+||..|..++|..|... .|.      .|..+||..+...
T Consensus         4 ~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~~   54 (64)
T 2d8u_A            4 GSSGHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQG   54 (64)
T ss_dssp             CCCCCCCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCSS
T ss_pred             CCCCCCcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHHH
Confidence            3444557999988999999999999999999875 564      7888888876654

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=97.49  E-value=0.00011  Score=48.64  Aligned_cols=48  Identities=17%  Similarity=0.329  Sum_probs=39.2

Q ss_pred             CCCCCccccCCcceEEEccCccccccccccc-cccCCCCCcCCCcceeeeccccc
Q 032401           66 SQLPSCDICQERNGFFFCLEDRAILCRQCDV-SIHMASPFLSSHQRFLIGGIKVA  119 (141)
Q Consensus        66 ~~~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~-~~H~an~~~~~H~R~pl~~~~~~  119 (141)
                      .....|+.|+..+..+||..|..++|..|.. ..|.      .|..+||..+...
T Consensus        16 ~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~ea~~~   64 (84)
T 2dja_A           16 LRGITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDRFEK   64 (84)
T ss_dssp             SSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSSCCC
T ss_pred             CCCCcCcCcCCccccEEcCCCCceEcccCcCCCCCC------CCCccCHHHHHHH
Confidence            3445799998899999999999999999988 4564      7888888876543

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=97.46  E-value=5.2e-05  Score=45.63  Aligned_cols=44  Identities=20%  Similarity=0.505  Sum_probs=36.3

Q ss_pred             CCCccccCCcceEEEccCccccccccccccccCCCCCcCCCcceeeeccc
Q 032401           68 LPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIK  117 (141)
Q Consensus        68 ~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~~H~an~~~~~H~R~pl~~~~  117 (141)
                      ...|+.|+..+..+||..|..++|..|....|.      .|..+||..+.
T Consensus         6 ~~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~------~H~~~~l~ea~   49 (50)
T 2yvr_A            6 TVYCNVHKHEPLVLFCESCDTLTCRDCQLNAHK------DHQYQFLEDAV   49 (50)
T ss_dssp             SCBCSSSTTCBCCEEETTTTEEECHHHHHTTTT------TCCEEETTC--
T ss_pred             CCcCcCCCCCCEEEEeCCCCEEEecccCCCcCC------CCceecHHHHh
Confidence            345999988999999999999999999887664      78888887653

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=97.17  E-value=0.00024  Score=42.35  Aligned_cols=42  Identities=21%  Similarity=0.426  Sum_probs=34.3

Q ss_pred             CCCCccccCCcceEEEccCcccccccccccc-ccCCCCCcCCCcceeee
Q 032401           67 QLPSCDICQERNGFFFCLEDRAILCRQCDVS-IHMASPFLSSHQRFLIG  114 (141)
Q Consensus        67 ~~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~-~H~an~~~~~H~R~pl~  114 (141)
                      +...|..|+.++..+||..|..++|..|... .|.      .|..+||.
T Consensus         5 ~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~   47 (48)
T 3ddt_A            5 SHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQ   47 (48)
T ss_dssp             TSCBCSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TSCEEECC
T ss_pred             cCCcCCCCCCccccEEcCCCCeeEcccccCCCcCC------CCcEEeCC
Confidence            4456999998899999999999999999754 564      67777764

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.99  E-value=0.00076  Score=42.11  Aligned_cols=43  Identities=28%  Similarity=0.607  Sum_probs=35.9

Q ss_pred             CCCccccCCcceEEEccCcccccccccccc-ccCCCCCcCCCcceeeeccc
Q 032401           68 LPSCDICQERNGFFFCLEDRAILCRQCDVS-IHMASPFLSSHQRFLIGGIK  117 (141)
Q Consensus        68 ~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~-~H~an~~~~~H~R~pl~~~~  117 (141)
                      ...|..|+ .+..+||..|...||..|... .|.      .|..+||.++.
T Consensus        14 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH~------~H~~~~l~ea~   57 (59)
T 2yrg_A           14 VDHCARHG-EKLLLFCQEDGKVICWLCERSQEHR------GHHTFPTSGPS   57 (59)
T ss_dssp             SSBCTTTC-CBCCEEETTTCSEECHHHHTSTTTT------TCCEEECCSSC
T ss_pred             CccChhhC-ceeeeecCCCCcEEecccCCCCcCC------CCcEeeHHHHh
Confidence            35699997 789999999999999999874 464      78888888765

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=96.92  E-value=0.00028  Score=45.51  Aligned_cols=46  Identities=20%  Similarity=0.457  Sum_probs=38.2

Q ss_pred             CCCCccccCCcceEEEccCccccccccccccccCCCCCcCCCcceeeeccccc
Q 032401           67 QLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIKVA  119 (141)
Q Consensus        67 ~~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~~H~an~~~~~H~R~pl~~~~~~  119 (141)
                      ....|+.|+ .+..+||..|..++|..|....|.      .|..+||.++...
T Consensus        17 ~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H~------~H~~~~l~ea~~~   62 (72)
T 2csv_A           17 EARKCPVHG-KTMELFCQTDQTCICYLCMFQEHK------NHSTVTVEEAKAE   62 (72)
T ss_dssp             SCCBCTTTC-CBCCEEESSSCCEECHHHHHTTTS------SSCEEEHHHHHHH
T ss_pred             ccCcCcccC-CceEEEeCCCCeEEccccCCCCCC------CCCEecHHHHHHH
Confidence            445799995 899999999999999999886564      7888898876554

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=96.57  E-value=0.00094  Score=38.50  Aligned_cols=30  Identities=23%  Similarity=0.528  Sum_probs=26.1

Q ss_pred             CccccCCcceEEEccCcccccccccccc-ccC
Q 032401           70 SCDICQERNGFFFCLEDRAILCRQCDVS-IHM  100 (141)
Q Consensus        70 ~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~-~H~  100 (141)
                      .|..|+ ++..+||..|...+|..|..+ .|.
T Consensus         5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~   35 (42)
T 1fre_A            5 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA   35 (42)
T ss_dssp             CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred             cchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence            599997 789999999999999999884 454

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=95.94  E-value=0.0036  Score=42.16  Aligned_cols=43  Identities=16%  Similarity=0.462  Sum_probs=37.0

Q ss_pred             CCccccCC---cceEEEccCccccccccccccccCCCCCcCCCcce
Q 032401           69 PSCDICQE---RNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRF  111 (141)
Q Consensus        69 ~~Cd~C~~---~~a~~~C~~d~~~LC~~Cd~~~H~an~~~~~H~R~  111 (141)
                      ..|++|..   .++..+|..|...||..|....|..+....+|+.+
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~   49 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   49 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred             CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence            34999984   68999999999999999999889877777788876

>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.72  E-value=0.0044  Score=38.30  Aligned_cols=32  Identities=28%  Similarity=0.446  Sum_probs=27.2

Q ss_pred             CCCccccCCcceEEEccCcccccccccccc-ccC
Q 032401           68 LPSCDICQERNGFFFCLEDRAILCRQCDVS-IHM  100 (141)
Q Consensus        68 ~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~-~H~  100 (141)
                      ...|..|+ ++..+||..|...||..|... .|.
T Consensus        18 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~   50 (57)
T 2egm_A           18 QGICPKHQ-EALKLFCEVDEEAICVVCRESRSHK   50 (57)
T ss_dssp             TSBCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred             cCcChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence            44699995 899999999999999999874 464

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=95.58  E-value=0.0081  Score=39.50  Aligned_cols=43  Identities=26%  Similarity=0.551  Sum_probs=36.6

Q ss_pred             CCcccccCC---CceEEEeeCCCcccchhhhhccccCCCCCCCeeE
Q 032401            2 KLQCEVCEK---AEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQR   44 (141)
Q Consensus         2 ~~~C~~C~~---~~A~~~C~~d~a~LC~~CD~~~H~an~l~~~H~R   44 (141)
                      .+.|++|..   .+|+..|..+.+.||..|-...|...+.+++|.-
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L   75 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL   75 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence            368999975   6799999999999999999766987777888864

>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1

Probab=94.52  E-value=0.057  Score=34.88  Aligned_cols=56  Identities=25%  Similarity=0.324  Sum_probs=45.3

Q ss_pred             CCCCCCCCccccCCcceEEEccCc-cccccccccccccCCCCCcCCCcceeeecccccc
Q 032401           63 PSASQLPSCDICQERNGFFFCLED-RAILCRQCDVSIHMASPFLSSHQRFLIGGIKVAL  120 (141)
Q Consensus        63 ~~~~~~~~Cd~C~~~~a~~~C~~d-~~~LC~~Cd~~~H~an~~~~~H~R~pl~~~~~~~  120 (141)
                      ......+.|-+|... |.+.|..| .-+.|..|-...|. ....+.|+-++....++.-
T Consensus         3 ~~~ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~~~~k~~   59 (67)
T 2d8v_A            3 SGSSGLPWCCICNED-ATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHPRRPCQ   59 (67)
T ss_dssp             SSCCCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCCSSSSC
T ss_pred             CcCcCCCeeEEeCCC-CeEEecCCCCceehHHHHHHHcc-chhhhccceeeccCCCCCc
Confidence            445667889999865 99999988 78999999999995 5677899999987665443

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=92.70  E-value=0.094  Score=34.24  Aligned_cols=44  Identities=16%  Similarity=0.436  Sum_probs=36.1

Q ss_pred             CCCccccCC---cceEEEccCccccccccccccccCCCCCcCCCcce
Q 032401           68 LPSCDICQE---RNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRF  111 (141)
Q Consensus        68 ~~~Cd~C~~---~~a~~~C~~d~~~LC~~Cd~~~H~an~~~~~H~R~  111 (141)
                      ...|++|..   .+|.-+|..|.+.+|..|-...|...+...+|.-+
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~   76 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   76 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence            456999975   67999999999999999988778776666777654

>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1

Probab=88.01  E-value=0.7  Score=29.73  Aligned_cols=46  Identities=22%  Similarity=0.388  Sum_probs=38.9

Q ss_pred             CCcccccCCCceEEEeeCC-CcccchhhhhccccCCCCCCCeeEEEecc
Q 032401            2 KLQCEVCEKAEAEVLCCAD-EAVLCSNCDVKVHTANKLSRKHQRFSLLK   49 (141)
Q Consensus         2 ~~~C~~C~~~~A~~~C~~d-~a~LC~~CD~~~H~an~l~~~H~Rv~l~~   49 (141)
                      .+.|-+|... |++.|..+ ...+|..|=+..|. ..-.+.|+.+++..
T Consensus         8 ~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~~   54 (67)
T 2d8v_A            8 LPWCCICNED-ATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHP   54 (67)
T ss_dssp             CSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCC
T ss_pred             CCeeEEeCCC-CeEEecCCCCceehHHHHHHHcc-chhhhccceeeccC
Confidence            4679999974 99999988 78899999999996 45578999999943

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=85.61  E-value=0.83  Score=26.97  Aligned_cols=38  Identities=24%  Similarity=0.591  Sum_probs=29.7

Q ss_pred             CcccccCCCceEEEeeCCCcccchhhhh-ccccCCCCCCCeeEEEe
Q 032401            3 LQCEVCEKAEAEVLCCADEAVLCSNCDV-KVHTANKLSRKHQRFSL   47 (141)
Q Consensus         3 ~~C~~C~~~~A~~~C~~d~a~LC~~CD~-~~H~an~l~~~H~Rv~l   47 (141)
                      ..|..-. .+-.+||..|...+|..|.. .-|      +.|..+||
T Consensus         9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l   47 (53)
T 2did_A            9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPL   47 (53)
T ss_dssp             CBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEEC
T ss_pred             CcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeH
Confidence            4566555 57789999999999999985 445      45888888

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=82.32  E-value=1.3  Score=25.69  Aligned_cols=39  Identities=23%  Similarity=0.600  Sum_probs=30.0

Q ss_pred             CcccccCCCceEEEeeCCCcccchhhhhccccCCCCCCCeeEEEe
Q 032401            3 LQCEVCEKAEAEVLCCADEAVLCSNCDVKVHTANKLSRKHQRFSL   47 (141)
Q Consensus         3 ~~C~~C~~~~A~~~C~~d~a~LC~~CD~~~H~an~l~~~H~Rv~l   47 (141)
                      ..|..-...+-.+||..|...+|..|-..-|      +.|..++|
T Consensus         7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l   45 (50)
T 2yvr_A            7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFL   45 (50)
T ss_dssp             CBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEET
T ss_pred             CcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecH
Confidence            3566554456789999999999999986544      35888888

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=82.06  E-value=1.3  Score=25.52  Aligned_cols=37  Identities=24%  Similarity=0.521  Sum_probs=26.9

Q ss_pred             ccccCCCceEEEeeCCCcccchhhh-hccccCCCCCCCeeEEEe
Q 032401            5 CEVCEKAEAEVLCCADEAVLCSNCD-VKVHTANKLSRKHQRFSL   47 (141)
Q Consensus         5 C~~C~~~~A~~~C~~d~a~LC~~CD-~~~H~an~l~~~H~Rv~l   47 (141)
                      |..=...+-.+||..|...+|..|. ..-|.      .|..+||
T Consensus         9 C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l   46 (48)
T 3ddt_A            9 CKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPL   46 (48)
T ss_dssp             CSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TSCEEEC
T ss_pred             CCCCCCccccEEcCCCCeeEcccccCCCcCC------CCcEEeC
Confidence            4443335578999999999999996 33454      4777777

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.32  E-value=1.7  Score=26.35  Aligned_cols=38  Identities=26%  Similarity=0.563  Sum_probs=29.1

Q ss_pred             CcccccCCCceEEEeeCCCcccchhhhh-ccccCCCCCCCeeEEEe
Q 032401            3 LQCEVCEKAEAEVLCCADEAVLCSNCDV-KVHTANKLSRKHQRFSL   47 (141)
Q Consensus         3 ~~C~~C~~~~A~~~C~~d~a~LC~~CD~-~~H~an~l~~~H~Rv~l   47 (141)
                      ..|..-+ .+-.+||..|...+|..|.. .-|      +.|..+||
T Consensus        15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l   53 (59)
T 2yrg_A           15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPT   53 (59)
T ss_dssp             SBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEEC
T ss_pred             ccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeH
Confidence            3465554 46789999999999999986 444      45888888

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	141
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	97.83
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	97.43
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	97.41
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	97.24
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	97.15
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	97.09
d2fc7a1	69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	88.34
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	83.5
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	80.61

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=3.5e-06  Score=50.34  Aligned_cols=43  Identities=21%  Similarity=0.431  Sum_probs=33.4

Q ss_pred             CCccccCCcceEEEccCcccccccccccc-ccCCCCCcCCCcceeeeccc
Q 032401           69 PSCDICQERNGFFFCLEDRAILCRQCDVS-IHMASPFLSSHQRFLIGGIK  117 (141)
Q Consensus        69 ~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~-~H~an~~~~~H~R~pl~~~~  117 (141)
                      +.|+.|++++..|||..|..++|..|.+. .|.      +|.-.+|..+.
T Consensus         2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~Hk------~H~v~~l~~a~   45 (51)
T d2d8ua1           2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVF   45 (51)
T ss_dssp             CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCC
T ss_pred             CCCcccCcCcceEEcCCCCceECccccCcCCcC------cCcCcCHHHHH
Confidence            35999999999999999999999999765 352      46555554433

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=4e-05  Score=44.85  Aligned_cols=40  Identities=20%  Similarity=0.498  Sum_probs=33.2

Q ss_pred             CCccccCCcceEEEccCcccccccccccc-ccCCCCCcCCCcceeee
Q 032401           69 PSCDICQERNGFFFCLEDRAILCRQCDVS-IHMASPFLSSHQRFLIG  114 (141)
Q Consensus        69 ~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~-~H~an~~~~~H~R~pl~  114 (141)
                      ..|+.|++++..+||.+|..++|..|.+. .|.      .|.-.+|.
T Consensus         6 ~~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H~------~H~~~~l~   46 (47)
T d2dq5a1           6 LMCLEHEDEKVNMYCVTDDQLICALCKLVGRHR------DHQVAALS   46 (47)
T ss_dssp             CBCSSCTTSBEEEEETTTTEEEEHHHHHTSSTT------SSCCCCSC
T ss_pred             ccchhhCCCcceEEcCCCCccCCccCcCcCCcC------CCeEeeCC
Confidence            35999999999999999999999999765 464      57666654

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=6e-05  Score=47.14  Aligned_cols=47  Identities=17%  Similarity=0.314  Sum_probs=37.5

Q ss_pred             CCCCCccccCCcceEEEccCccccccccccccc-cCCCCCcCCCcceeeecccc
Q 032401           66 SQLPSCDICQERNGFFFCLEDRAILCRQCDVSI-HMASPFLSSHQRFLIGGIKV  118 (141)
Q Consensus        66 ~~~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~~-H~an~~~~~H~R~pl~~~~~  118 (141)
                      .....|+.|++.+..|||.+|..++|..|...+ |.      +|.-.+|..+..
T Consensus         9 ~r~~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~Hk------~H~~~~i~~a~~   56 (71)
T d2djaa1           9 LRGITCLDHENEKVNMYCVSDDQLICALCKLVGRHR------DHQVASLNDRFE   56 (71)
T ss_dssp             SSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTTT------TCCBCCCCSSCC
T ss_pred             cCCCcCcccCCccceeEcCCCCceeccccccCCCCC------CCcCcCHHHHHH
Confidence            333469999999999999999999999997764 53      687777776543

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=5e-05  Score=46.34  Aligned_cols=47  Identities=19%  Similarity=0.423  Sum_probs=38.1

Q ss_pred             CCCCCCCccccCCcceEEEccCccccccccccccccCCCCCcCCCcceeeeccc
Q 032401           64 SASQLPSCDICQERNGFFFCLEDRAILCRQCDVSIHMASPFLSSHQRFLIGGIK  117 (141)
Q Consensus        64 ~~~~~~~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~~H~an~~~~~H~R~pl~~~~  117 (141)
                      ...+...|..|+ .+..|||..|..++|..|....|.      .|.-+||..+.
T Consensus         7 ~~~~~~~C~~H~-e~l~lyC~~c~~~iC~~C~~~~H~------~H~~~~l~~a~   53 (59)
T d2csva1           7 RDFEARKCPVHG-KTMELFCQTDQTCICYLCMFQEHK------NHSTVTVEEAK   53 (59)
T ss_dssp             SSSSCCBCTTTC-CBCCEEESSSCCEECHHHHHTTTS------SSCEEEHHHHH
T ss_pred             hhhhhCchhhhC-CccceECCCCCceECcccCcccCC------CCCeeCHHHHH
Confidence            334456799995 799999999999999999776674      78888887654

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.15  E-value=7.7e-05  Score=42.09  Aligned_cols=37  Identities=27%  Similarity=0.557  Sum_probs=30.7

Q ss_pred             CccccCCcceEEEccCccccccccccccc-cCCCCCcCCCcceee
Q 032401           70 SCDICQERNGFFFCLEDRAILCRQCDVSI-HMASPFLSSHQRFLI  113 (141)
Q Consensus        70 ~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~~-H~an~~~~~H~R~pl  113 (141)
                      .|+.|+ ++..+||.+|..++|..|...+ |.      +|.-+||
T Consensus         2 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~v~pi   39 (39)
T d1frea_           2 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA------SHNFLPI   39 (39)
T ss_dssp             CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT------TCCCCCC
T ss_pred             CCcccC-cceeEEcccCCcEeeccCcCCCCcC------CCcEeeC
Confidence            499996 7999999999999999997754 64      6776665

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00011  Score=41.68  Aligned_cols=37  Identities=27%  Similarity=0.579  Sum_probs=31.1

Q ss_pred             CccccCCcceEEEccCcccccccccccc-ccCCCCCcCCCcceee
Q 032401           70 SCDICQERNGFFFCLEDRAILCRQCDVS-IHMASPFLSSHQRFLI  113 (141)
Q Consensus        70 ~Cd~C~~~~a~~~C~~d~~~LC~~Cd~~-~H~an~~~~~H~R~pl  113 (141)
                      .|+.|+ ++..+||.+|+.++|..|..+ .|.      .|.-+||
T Consensus         3 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~------~H~v~pi   40 (40)
T d2dida1           3 LCPQHH-EALSLFCYEDQEAVCLICAISHTHR------AHTVVPL   40 (40)
T ss_dssp             BCTTTC-CBCCEEESSSCSEECHHHHTSSTTT------TSCEEEC
T ss_pred             cchhhC-ccceEEcccCCcEeeccCcCCCCcC------CCcEecC
Confidence            599995 899999999999999999876 463      6777775

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 3, ZZZ3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.34  E-value=0.32  Score=29.62  Aligned_cols=44  Identities=23%  Similarity=0.400  Sum_probs=31.1

Q ss_pred             CccccCCcc---eEEEccCc----cccccccccccccCCCCCcCCCcceee
Q 032401           70 SCDICQERN---GFFFCLED----RAILCRQCDVSIHMASPFLSSHQRFLI  113 (141)
Q Consensus        70 ~Cd~C~~~~---a~~~C~~d----~~~LC~~Cd~~~H~an~~~~~H~R~pl  113 (141)
                      .|+.|...+   ..|.|..|    ..-||..|-...+....-...|.-.||
T Consensus        16 ~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~~~~~~~H~~~H~~~~I   66 (69)
T d2fc7a1          16 KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPI   66 (69)
T ss_dssp             CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEE
T ss_pred             EcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcCcccCCCCCCCCCEEEe
Confidence            599999886   57889998    689999997766543322235555554

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.50  E-value=0.56  Score=25.40  Aligned_cols=37  Identities=24%  Similarity=0.626  Sum_probs=26.9

Q ss_pred             cccccCCCceEEEeeCCCcccchhhhh-ccccCCCCCCCeeEEEe
Q 032401            4 QCEVCEKAEAEVLCCADEAVLCSNCDV-KVHTANKLSRKHQRFSL   47 (141)
Q Consensus         4 ~C~~C~~~~A~~~C~~d~a~LC~~CD~-~~H~an~l~~~H~Rv~l   47 (141)
                      +|..=+ .+=.+||..|...+|..|.. .-|      +.|.-+||
T Consensus         3 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~v~pi   40 (40)
T d2dida1           3 LCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPL   40 (40)
T ss_dssp             BCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEEC
T ss_pred             cchhhC-ccceEEcccCCcEeeccCcCCCCc------CCCcEecC
Confidence            455443 46689999999999999974 245      34777775

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.61  E-value=0.39  Score=28.71  Aligned_cols=40  Identities=30%  Similarity=0.654  Sum_probs=30.8

Q ss_pred             CcccccCCCceEEEeeCCCcccchhhhhc-cccCCCCCCCeeEEEec
Q 032401            3 LQCEVCEKAEAEVLCCADEAVLCSNCDVK-VHTANKLSRKHQRFSLL   48 (141)
Q Consensus         3 ~~C~~C~~~~A~~~C~~d~a~LC~~CD~~-~H~an~l~~~H~Rv~l~   48 (141)
                      ..|..-...+..+||..|...+|..|-.. .|      +.|..++|.
T Consensus        12 ~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H------k~H~~~~i~   52 (71)
T d2djaa1          12 ITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLN   52 (71)
T ss_dssp             CCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCC
T ss_pred             CcCcccCCccceeEcCCCCceeccccccCCCC------CCCcCcCHH
Confidence            35777666788999999999999999643 45      348888883