Citrus Sinensis ID: 032412

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MAIADWHSRSNSDKKLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATGN
Secondary Structure (PSIPRED)
cccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEccccccEEEEEEEEEccccccEEEEEEccccccEEEEccccEEccccEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccEEEEcccccccccccccccccccccccccccccEEcccccccccccHHHHHHHHHcccHHHcccccccccEcccccccEEEEEEEEEEccccEEEEEEEEcccccEEEcccccEEccccEEEEccc
Coil and Loop (DISEMBL)
maiadwhsrsnsdkklfgfcpfwqtsttatpsssasstqnlttsssnphvgvpnssrpatkTVSYVARsllpprrrlrldpsnnlyfpyepgkqtrsavrlkntskshvafkfqttapkscymrppggvlapgdsiiatgn
Flexible Loop (DISEMBL)
maiadwhsrsnsdkkLFGFCPFWQTSTTATPSSSASSTQNlttsssnphvgvpnssrpatktvsyvarsllpprrrlrldpsnnlyfpyepgkqtrsavrlkNTSKSHVafkfqttapkscymrppggvlapgdsiiatgn
Low Complexity Region (SEG)
MAIADWHSRSNSDKKLFGFCPFWqtsttatpsssasstqnlttsssnpHVGVPNSSRPATKTVSYVArsllpprrrlrldpsnnlYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATGN
Disordered region (IsUnstruct)
**************KLFGFCPFWQT***********************************************************LYF**********************AFKFQ******CY*******************
Disordered Region (DISOPRED)
****************************************************************************LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIA***
Disordered Region (DISEMBL)
**********NSDKKLFGFCPFWQTS*********************************TKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATGN
Disordered Region (DISPRO)
*************KKLFGFCPFWQ**********************************************LPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIADWHSRSNSDKKLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	141	2.2.26 [Sep-21-2011]
Q1ECE0	266	Vesicle-associated protei	yes	no	0.978	0.518	0.621	3e-32
Q8VYN2	295	Vesicle-associated protei	no	no	0.553	0.264	0.769	7e-32
Q8LPQ7	287	Vesicle-associated protei	no	no	0.553	0.271	0.756	7e-31
Q9LVU1	220	Vesicle-associated protei	no	no	0.390	0.25	0.4	6e-06
Q84WW5	239	Vesicle-associated protei	no	no	0.368	0.217	0.452	6e-05
B9DHD7	386	Vesicle-associated protei	no	no	0.340	0.124	0.479	6e-05
Q9SYC9	571	Vesicle-associated protei	no	no	0.652	0.161	0.299	9e-05
Q9SHC8	239	Vesicle-associated protei	no	no	0.390	0.230	0.428	0.0001
Q8VZ95	256	Vesicle-associated protei	no	no	0.347	0.191	0.428	0.0003
Q9CWP6	518	Motile sperm domain-conta	yes	no	0.744	0.202	0.270	0.0007

>sp|Q1ECE0|VAP41_ARATH Vesicle-associated protein 4-1 OS=Arabidopsis thaliana GN=PVA41 PE=2 SV=1

 Score =  136 bits (343), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/140 (62%), Positives = 102/140 (72%), Gaps = 2/140 (1%)

Query: 1   MAIADWHSRSNSDKK-LFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPA 59
           M I D  + S   KK LF  CPFWQ  +T + SS+ +  QN  +   N +  +   S+P 
Sbjct: 1   MPIGDRQNPSVEKKKNLFRLCPFWQRRSTTSSSSTQNPNQNYRSRHGNRNTDISAVSKPP 60

Query: 60  TKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119
             T+S VARSLLP RRRLRLDPS+ LYFPYEPGKQ RSA++LKNTSKSH AFKFQTTAPK
Sbjct: 61  L-TMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPK 119

Query: 120 SCYMRPPGGVLAPGDSIIAT 139
           SCYMRPPGGVLAPG+S+ AT
Sbjct: 120 SCYMRPPGGVLAPGESVFAT 139

May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYN2|VAP42_ARATH Vesicle-associated protein 4-2 OS=Arabidopsis thaliana GN=PVA42 PE=1 SV=1

 Score =  135 bits (340), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 60/78 (76%), Positives = 71/78 (91%)

Query: 62  TVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSC 121
           +VS VA+S LP +RRL+LDPS  LYFPYEPGKQ RSA+++KNTSKSHVAFKFQTTAPKSC
Sbjct: 93  SVSSVAKSFLPTKRRLKLDPSEKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTAPKSC 152

Query: 122 YMRPPGGVLAPGDSIIAT 139
           +MRPPG +LAPG++IIAT
Sbjct: 153 FMRPPGAILAPGETIIAT 170

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPQ7|VAP43_ARATH Vesicle-associated protein 4-3 OS=Arabidopsis thaliana GN=PVA43 PE=2 SV=1

 Score =  132 bits (332), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 59/78 (75%), Positives = 69/78 (88%)

Query: 62  TVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSC 121
           ++S VARSLLP +RRL+LDPS  LYFPYEPGKQ RSA+++KNTSKSHVAFKFQTT PKSC
Sbjct: 85  SMSSVARSLLPTKRRLKLDPSAKLYFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSC 144

Query: 122 YMRPPGGVLAPGDSIIAT 139
           +MRP G +LAPG+ IIAT
Sbjct: 145 FMRPAGAILAPGEEIIAT 162

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 37/55 (67%)

Query: 83  NNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSII 137
           + L F +E  KQ+   +++ N ++++VAFK +TT+PK  ++RP  GV+ P DS I
Sbjct: 15  DELKFLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCI 69

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 84  NLYFPYEPGKQTRSAVRLKN-TSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDS 135
            L FP+E  KQ+  +++L N T+   VAFK +TT P+   +RP  GV+ PGDS
Sbjct: 13  ELKFPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDS 65

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 31/48 (64%)

Query: 85  LYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAP 132
           L F  +  KQT   V+L NT+  +VAFK +TT+PK   +RP  GV+AP
Sbjct: 13  LQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAP 60

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 15/107 (14%)

Query: 29  ATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSYVARSLLPPRRRLRLDPSNNLYFP 88
           ++PS+S S   N +     P VG+ +  R + +               L +DP + + FP
Sbjct: 143 SSPSASVSDKGNASEVFVGPSVGIVDLIRMSDEL--------------LIIDPVD-VQFP 187

Query: 89  YEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDS 135
            E  K+   ++ L N ++++VAFK +TT  K  Y+RP  GV+ P  S
Sbjct: 188 IELNKKVSCSLNLTNKTENYVAFKAKTTNAKKYYVRPNVGVVLPRSS 234

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAP 132
           L +DP + L FP+E  KQ   ++ L N + ++VAFK +TT PK   +RP  GV+ P
Sbjct: 6   LTIDPVD-LQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHP 60

Vesicle-associated protein that binds the oxysterol-binding protein ORP3A and allows its targeting to the ER.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 31/49 (63%)

Query: 84  NLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAP 132
           +L FP+E  KQ   ++ L N + ++VAFK +TT PK   +RP  GV+ P
Sbjct: 29  DLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVLP 77

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CWP6|MSPD2_MOUSE Motile sperm domain-containing protein 2 OS=Mus musculus GN=Mospd2 PE=1 SV=2

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 6/111 (5%)

Query: 26  STTATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSYVARSLLPPRRRLRLDPSNNL 85
           S    P+ S  S    + S  + +  V + ++   K +S     LL       + P+  L
Sbjct: 283 SNEEPPALSEKSNPTESVSKKDENEKVDSKTKTFKKPLSVFKGPLL------HISPAEEL 336

Query: 86  YFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           YF      + ++ + L N +K+ VAFK +TTAP+   ++P      PG SI
Sbjct: 337 YFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASI 387

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
224117290	264	predicted protein [Populus trichocarpa]	0.929	0.496	0.669	4e-39
225461302	264	PREDICTED: vesicle-associated protein 4-	0.957	0.511	0.621	2e-38
224149512	127	predicted protein [Populus trichocarpa]	0.879	0.976	0.700	4e-38
356543790	263	PREDICTED: vesicle-associated protein 4-	0.929	0.498	0.656	4e-37
449475725	276	PREDICTED: vesicle-associated protein 4-	0.957	0.489	0.571	6e-33
388521835	270	unknown [Lotus japonicus]	0.929	0.485	0.567	1e-32
363807736	265	uncharacterized protein LOC100794120 [Gl	0.936	0.498	0.607	1e-32
224116236	235	predicted protein [Populus trichocarpa]	0.553	0.331	0.820	6e-32
357475961	266	Vesicle-associated membrane protein-asso	0.553	0.293	0.833	6e-32
356521293	269	PREDICTED: vesicle-associated protein 4-	0.971	0.509	0.551	6e-32

>gi|224117290|ref|XP_002317531.1| predicted protein [Populus trichocarpa] gi|222860596|gb|EEE98143.1| predicted protein [Populus trichocarpa]

 Score =  165 bits (418), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 91/136 (66%), Positives = 105/136 (77%), Gaps = 5/136 (3%)

Query: 8   SRSNSDK--KLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNP--HVGVPNSSRPATKTV 63
           +++N D   KLF  CPFWQT+T ++ SSS  +  +    S N   HV V NSS   + TV
Sbjct: 7   NKTNGDHNMKLFRLCPFWQTATNSSTSSSTQNLNHSHKGSGNSVRHVAV-NSSGLKSTTV 65

Query: 64  SYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYM 123
           S VARSLLP  RRLRLDP+NNLYFPYEPGKQ RSA+RLKN SKSHVAFKFQTTAPKSCYM
Sbjct: 66  SSVARSLLPAPRRLRLDPANNLYFPYEPGKQVRSAIRLKNRSKSHVAFKFQTTAPKSCYM 125

Query: 124 RPPGGVLAPGDSIIAT 139
           RPPGG+LAPG+S+IAT
Sbjct: 126 RPPGGILAPGESLIAT 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461302|ref|XP_002284424.1| PREDICTED: vesicle-associated protein 4-1 [Vitis vinifera] gi|147780490|emb|CAN60507.1| hypothetical protein VITISV_002788 [Vitis vinifera] gi|302143088|emb|CBI20383.3| unnamed protein product [Vitis vinifera]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 87/140 (62%), Positives = 104/140 (74%), Gaps = 5/140 (3%)

Query: 1   MAIADWHSRSNSDKKLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNS-SRPA 59
           M IAD   + +S+ KL+  CPFWQ+   +    S+SSTQN           V ++ +R +
Sbjct: 1   MGIAD-RRKPSSEGKLWRLCPFWQSGNGSP---SSSSTQNFQQHKIRGRRHVDDTDTRSS 56

Query: 60  TKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119
              VS VARS LP RRRLRLDP+NNLYFPYEPGKQ +SAVR+KNTS+SHVAFKFQTTAPK
Sbjct: 57  PSKVSSVARSFLPTRRRLRLDPANNLYFPYEPGKQVKSAVRMKNTSRSHVAFKFQTTAPK 116

Query: 120 SCYMRPPGGVLAPGDSIIAT 139
           SCYMRPPGG+LAPG+SIIAT
Sbjct: 117 SCYMRPPGGILAPGESIIAT 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224149512|ref|XP_002336820.1| predicted protein [Populus trichocarpa] gi|222836956|gb|EEE75349.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/127 (70%), Positives = 100/127 (78%), Gaps = 3/127 (2%)

Query: 15  KLFGFCPFWQTSTTATPSSSASSTQNLTTSSSNP--HVGVPNSSRPATKTVSYVARSLLP 72
           KLF  CPFWQT+T ++ SSS  +  +    S N   HV V NSS   + TVS VARSLLP
Sbjct: 2   KLFRLCPFWQTATNSSTSSSTQNLNHSHKGSGNSVRHVAV-NSSGLKSTTVSSVARSLLP 60

Query: 73  PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAP 132
             RRLRLDP+NNLYFPYEPGKQ RSA+RLKN SKSHVAFKFQTTAPKSCYMRPPGG+LAP
Sbjct: 61  APRRLRLDPANNLYFPYEPGKQVRSAIRLKNRSKSHVAFKFQTTAPKSCYMRPPGGILAP 120

Query: 133 GDSIIAT 139
           G+S+IAT
Sbjct: 121 GESLIAT 127

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543790|ref|XP_003540343.1| PREDICTED: vesicle-associated protein 4-2-like [Glycine max]

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 88/134 (65%), Positives = 101/134 (75%), Gaps = 3/134 (2%)

Query: 8   SRSNSDKKLFGFC--PFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSY 65
            +S SD K + FC  PFWQT+ T + SSS S   N+   S N    V  SS  ++ TVS 
Sbjct: 6   EKSGSDGKGWSFCRMPFWQTTHTPS-SSSMSYMHNVHQQSQNNAQSVDRSSHHSSTTVSS 64

Query: 66  VARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRP 125
           VA+SLLP +RRLRLDPSN LYFPYEPGKQ RSA+ +KNT KSHVAFKFQTTAPKSCYMRP
Sbjct: 65  VAKSLLPTKRRLRLDPSNKLYFPYEPGKQVRSAIAIKNTCKSHVAFKFQTTAPKSCYMRP 124

Query: 126 PGGVLAPGDSIIAT 139
           PGG+LAPG+SIIAT
Sbjct: 125 PGGILAPGESIIAT 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449475725|ref|XP_004154534.1| PREDICTED: vesicle-associated protein 4-2-like [Cucumis sativus]

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 84/147 (57%), Positives = 103/147 (70%), Gaps = 12/147 (8%)

Query: 1   MAIADWHSRSNSDKKLFGFC--PFWQTSTT-----ATPSSSASSTQNLTTSSSNPHVGVP 53
           MA+AD   +S  D K++  C  PFWQ S       ++ SSS+SS  +     SN H    
Sbjct: 1   MAVAD--EKSGPDGKVWSLCSIPFWQNSNAPSSSSSSSSSSSSSVIHRVHLQSNGHKPAE 58

Query: 54  NSS-RPATKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFK 112
           +SS  P    VS +A+SL P +RRLRLDPSN LYFP+EPGKQ +SA+ +KNTSK+HVAFK
Sbjct: 59  HSSSHPGV--VSAIAKSLCPTKRRLRLDPSNKLYFPFEPGKQVKSAIEIKNTSKNHVAFK 116

Query: 113 FQTTAPKSCYMRPPGGVLAPGDSIIAT 139
           FQTTAPKSCYMRPPGG+LAP +SIIAT
Sbjct: 117 FQTTAPKSCYMRPPGGILAPDESIIAT 143

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521835|gb|AFK48979.1| unknown [Lotus japonicus]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/134 (56%), Positives = 97/134 (72%), Gaps = 3/134 (2%)

Query: 8   SRSNSDKKLFGFC--PFWQTSTTATPSSSASSTQNLTTSSSNPHVGVPNSSRPATKTVSY 65
            ++ SD K+   C  PFWQT+  ++ S++ SS  ++   +      +  S+   + TVS 
Sbjct: 6   EKTGSDVKVRSLCSMPFWQTTRASSSSATGSSMHSVHQQNQVVQ-SLDRSNHQPSSTVSS 64

Query: 66  VARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRP 125
           +A+SLLP  +RLRLDP N LYFPYEPGKQ RSAV +KNT KSHVAFKFQTTAPKSC+MRP
Sbjct: 65  LAKSLLPIWKRLRLDPPNKLYFPYEPGKQVRSAVAIKNTCKSHVAFKFQTTAPKSCFMRP 124

Query: 126 PGGVLAPGDSIIAT 139
           PGG+LAPG+SIIAT
Sbjct: 125 PGGILAPGESIIAT 138

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807736|ref|NP_001241916.1| uncharacterized protein LOC100794120 [Glycine max] gi|255637375|gb|ACU19016.1| unknown [Glycine max]

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/135 (60%), Positives = 100/135 (74%), Gaps = 3/135 (2%)

Query: 8   SRSNSDKKLFGFC--PFWQTSTTATPSSSASS-TQNLTTSSSNPHVGVPNSSRPATKTVS 64
            +S SD K + FC  PFWQT+ T + S+++ S   N+   + N    V  SS  ++ TVS
Sbjct: 6   EKSGSDGKGWSFCRMPFWQTTHTPSSSTTSMSYMHNVHPQNQNNFQSVDRSSHHSSTTVS 65

Query: 65  YVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMR 124
            +A+SLLP +RRL LDPSN LYFPYEPGKQ RSA+ +KNT KSHVAFKFQTTAPKSCYMR
Sbjct: 66  SMAKSLLPTKRRLHLDPSNKLYFPYEPGKQVRSAIAIKNTCKSHVAFKFQTTAPKSCYMR 125

Query: 125 PPGGVLAPGDSIIAT 139
           PP G+LAPG+SIIAT
Sbjct: 126 PPAGILAPGESIIAT 140

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116236|ref|XP_002317246.1| predicted protein [Populus trichocarpa] gi|222860311|gb|EEE97858.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 64/78 (82%), Positives = 73/78 (93%)

Query: 62  TVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSC 121
           +VS VARSLLP RRRL+LDP++ LYFPYEPGKQ RSA+R+KNTSKSHVAFKFQTTAPKSC
Sbjct: 33  SVSSVARSLLPTRRRLKLDPASKLYFPYEPGKQVRSAIRIKNTSKSHVAFKFQTTAPKSC 92

Query: 122 YMRPPGGVLAPGDSIIAT 139
           +MRPPG +LAPG+SIIAT
Sbjct: 93  FMRPPGAILAPGESIIAT 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475961|ref|XP_003608266.1| Vesicle-associated membrane protein-associated protein A [Medicago truncatula] gi|87240479|gb|ABD32337.1| Major sperm protein [Medicago truncatula] gi|355509321|gb|AES90463.1| Vesicle-associated membrane protein-associated protein A [Medicago truncatula]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 65/78 (83%), Positives = 73/78 (93%)

Query: 62  TVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSC 121
           +VS VARSLLP RRRL+LDPSN LYFPYEPGKQ RSA+R+KNTSKS+VAFKFQTTAPKSC
Sbjct: 65  SVSSVARSLLPTRRRLKLDPSNKLYFPYEPGKQVRSAIRIKNTSKSNVAFKFQTTAPKSC 124

Query: 122 YMRPPGGVLAPGDSIIAT 139
           +MRPPG +LAPG+SIIAT
Sbjct: 125 FMRPPGAILAPGESIIAT 142

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521293|ref|XP_003529291.1| PREDICTED: vesicle-associated protein 4-2-like [Glycine max]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 81/147 (55%), Positives = 101/147 (68%), Gaps = 10/147 (6%)

Query: 1   MAIADWHSRSNSDKKLFGF--CPFWQTSTTATPSSSASSTQNLTTSSSNPHVGV------ 52
           MA+AD   + +S+ K++ F   PF  ++ T T  SSA+        + + H         
Sbjct: 1   MAVAD--PKPHSEPKVWNFFKLPFRHSAATNTTPSSANLHHLHHHHNHHHHHHNPNNLPL 58

Query: 53  PNSSRPATKTVSYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFK 112
             S+   + +VS VARSLLP RRRL+LDPSN LYFPYEPGKQ RSA+R+KNTSKS VAFK
Sbjct: 59  EGSTSHTSNSVSSVARSLLPTRRRLKLDPSNKLYFPYEPGKQVRSAIRIKNTSKSSVAFK 118

Query: 113 FQTTAPKSCYMRPPGGVLAPGDSIIAT 139
           FQTTAPKSC+MRPPG +LAPG+SIIAT
Sbjct: 119 FQTTAPKSCFMRPPGAILAPGESIIAT 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
TAIR|locus:2166582	266	MAMI "membrane-associated mann	0.978	0.518	0.464	1.2e-26
UNIPROTKB|Q6YZ10	233	P0473D02.15 "cDNA clone:001-01	0.382	0.231	0.851	3.4e-22
TAIR|locus:2138401	287	AT4G05060 [Arabidopsis thalian	0.382	0.188	0.796	8e-21
TAIR|locus:2171594	220	AT5G47180 [Arabidopsis thalian	0.361	0.231	0.411	9.8e-06
TAIR|locus:2126921	239	AT4G00170 [Arabidopsis thalian	0.375	0.221	0.444	1.6e-05
TAIR|locus:2025585	386	VAP27-2 "vamp/synaptobrevin-as	0.326	0.119	0.478	8.5e-05
UNIPROTKB|Q5F419	151	VAPA "Uncharacterized protein"	0.290	0.271	0.414	0.0001
WB|WBGene00018008	245	vpr-1 [Caenorhabditis elegans	0.276	0.159	0.538	0.00013
UNIPROTKB|O44782	245	vpr-1 "Major sperm protein" [C	0.276	0.159	0.538	0.00013
TAIR|locus:2055557	239	PVA12 "plant VAP homolog 12" [	0.347	0.205	0.428	0.00021

TAIR|locus:2166582 MAMI "membrane-associated mannitol-induced" [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 65/140 (46%), Positives = 74/140 (52%)

Query:     1 MAIADWHSRSNSDKK-LFGFCPFWXXXXXXXXXXXXXXXXXXXXXXXXXHVGVPNSSRPA 59
             M I D  + S   KK LF  CPFW                         +  +   S+P 
Sbjct:     1 MPIGDRQNPSVEKKKNLFRLCPFWQRRSTTSSSSTQNPNQNYRSRHGNRNTDISAVSKPP 60

Query:    60 TKTVSYVAXXXXXXXXXXXXXXXXXXYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK 119
               T+S VA                  YFPYEPGKQ RSA++LKNTSKSH AFKFQTTAPK
Sbjct:    61 L-TMSSVARSLLPARRRLRLDPSSYLYFPYEPGKQVRSAIKLKNTSKSHTAFKFQTTAPK 119

Query:   120 SCYMRPPGGVLAPGDSIIAT 139
             SCYMRPPGGVLAPG+S+ AT
Sbjct:   120 SCYMRPPGGVLAPGESVFAT 139

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006970 "response to osmotic stress" evidence=IEP

UNIPROTKB|Q6YZ10 P0473D02.15 "cDNA clone:001-014-D04, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 46/54 (85%), Positives = 52/54 (96%)

Query:    86 YFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIAT 139
             +FPYEPGKQ RSAV++KN SKSHVAFKFQTTAPKSC+MRPPGG+LAPG+SIIAT
Sbjct:    55 FFPYEPGKQVRSAVKIKNISKSHVAFKFQTTAPKSCFMRPPGGILAPGESIIAT 108

GO:0009739 "response to gibberellin stimulus" evidence=IMP

TAIR|locus:2138401 AT4G05060 [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 43/54 (79%), Positives = 49/54 (90%)

Query:    86 YFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIAT 139
             YFPYEPGKQ RSA+++KNTSKSHVAFKFQTT PKSC+MRP G +LAPG+ IIAT
Sbjct:   109 YFPYEPGKQVRSAIKIKNTSKSHVAFKFQTTVPKSCFMRPAGAILAPGEEIIAT 162

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 9.8e-06, P = 9.8e-06
 Identities = 21/51 (41%), Positives = 35/51 (68%)

Query:    87 FPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSII 137
             F +E  KQ+   +++ N ++++VAFK +TT+PK  ++RP  GV+ P DS I
Sbjct:    19 FLFELEKQSYCDLKVANKTENYVAFKVKTTSPKKYFVRPNTGVIQPWDSCI 69

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 24/54 (44%), Positives = 34/54 (62%)

Query:    87 FPYEPGKQTRSAVRLKN-TSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIAT 139
             FP+E  KQ+  +++L N T+   VAFK +TT P+   +RP  GV+ PGDS   T
Sbjct:    16 FPFELKKQSSCSMQLTNKTTTQCVAFKVKTTNPRKYCVRPNTGVVLPGDSCNVT 69

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2025585 VAP27-2 "vamp/synaptobrevin-associated protein 27-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 8.5e-05, P = 8.5e-05
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query:    87 FPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAP 132
             F  +  KQT   V+L NT+  +VAFK +TT+PK   +RP  GV+AP
Sbjct:    15 FAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAP 60

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0046907 "intracellular transport" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q5F419 VAPA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
 Identities = 17/41 (41%), Positives = 27/41 (65%)

Query:    99 VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIAT 139
             ++L+N S   V FK +TTAP+   +RP  G++ PG S+I +
Sbjct:    36 LKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSSVIVS 76

GO:0005198 "structural molecule activity" evidence=IEA

WB|WBGene00018008 vpr-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 97 (39.2 bits), Expect = 0.00013, P = 0.00013
 Identities = 21/39 (53%), Positives = 26/39 (66%)

Query:    97 SAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDS 135
             S + LKNTS + V FK +TTAPK   +RP  G+L  GDS
Sbjct:    28 SHMTLKNTSTNPVCFKVKTTAPKQYCVRPNSGLLKSGDS 66

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0046875 "ephrin receptor binding" evidence=IPI

GO:0019904 "protein domain specific binding" evidence=IPI

UNIPROTKB|O44782 vpr-1 "Major sperm protein" [Caenorhabditis elegans (taxid:6239)]

 Score = 97 (39.2 bits), Expect = 0.00013, P = 0.00013
 Identities = 21/39 (53%), Positives = 26/39 (66%)

Query:    97 SAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDS 135
             S + LKNTS + V FK +TTAPK   +RP  G+L  GDS
Sbjct:    28 SHMTLKNTSTNPVCFKVKTTAPKQYCVRPNSGLLKSGDS 66

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 0.00021, P = 0.00021
 Identities = 21/49 (42%), Positives = 30/49 (61%)

Query:    87 FPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDS 135
             FP+E  KQ   ++ L N + ++VAFK +TT PK   +RP  GV+ P  S
Sbjct:    15 FPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPRSS 63

GO:0005198 "structural molecule activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006605 "protein targeting" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00110991 hypothetical protein (265 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	141
pfam00635	109	pfam00635, Motile_Sperm, MSP (Major sperm protein)	2e-20
COG5066	242	COG5066, SCS2, VAMP-associated protein involved in	0.003

>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain

 Score = 79.7 bits (197), Expect = 2e-20
 Identities = 27/63 (42%), Positives = 36/63 (57%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L +DP + L+F     KQ  S + L N S   VAFK +TT PK   +RP  G+L PG+S+
Sbjct: 2   LTIDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGESV 61

Query: 137 IAT 139
             T
Sbjct: 62  TIT 64

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109

>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

 Score = 36.1 bits (83), Expect = 0.003
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 82  SNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           S    F      +++    ++N S   V FK +TTAPK   +RP  G++ P  ++
Sbjct: 6   SPQTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTV 60

Length = 242

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
PF00635	109	Motile_Sperm: MSP (Major sperm protein) domain; In	99.79
KOG0439	218	consensus VAMP-associated protein involved in inos	99.78
COG5066	242	SCS2 VAMP-associated protein involved in inositol	99.57
PF14874	102	PapD-like: Flagellar-associated PapD-like	98.56
PF00345	122	PapD_N: Pili and flagellar-assembly chaperone, Pap	95.96
PF14646	426	MYCBPAP: MYCBP-associated protein family	92.71
PF07610	45	DUF1573: Protein of unknown function (DUF1573); In	92.18
PF11614	118	FixG_C: IG-like fold at C-terminal of FixG, putati	91.38
PRK09918	230	putative fimbrial chaperone protein; Provisional	90.39
PRK09926	246	putative chaperone protein EcpD; Provisional	84.77
PRK15249	253	fimbrial chaperone protein StbB; Provisional	83.01
TIGR03079	399	CH4_NH3mon_ox_B methane monooxygenase/ammonia mono	80.87
PRK15295	226	fimbrial assembly chaperone SthB; Provisional	80.51
PF06280	112	DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0	80.31

>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm

Probab=99.79  E-value=3.9e-19  Score=125.29  Aligned_cols=64  Identities=33%  Similarity=0.559  Sum_probs=58.2

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        77 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      |.|+|.+.|.|.++.++...+.|+|+|.++.+||||||||+|.+|+|+|+.|+|+||+++.|.|
T Consensus         2 l~v~P~~~i~F~~~~~~~~~~~l~l~N~s~~~i~fKiktt~~~~y~v~P~~G~i~p~~~~~i~I   65 (109)
T PF00635_consen    2 LSVEPSELIFFNAPFNKQQSCELTLTNPSDKPIAFKIKTTNPNRYRVKPSYGIIEPGESVEITI   65 (109)
T ss_dssp             CEEESSSEEEEESSTSS-EEEEEEEEE-SSSEEEEEEEES-TTTEEEESSEEEE-TTEEEEEEE
T ss_pred             eEEeCCcceEEcCCCCceEEEEEEEECCCCCcEEEEEEcCCCceEEecCCCEEECCCCEEEEEE
Confidence            7899999999999999999999999999999999999999999999999999999999999986

These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=8.3e-19  Score=138.64  Aligned_cols=70  Identities=40%  Similarity=0.669  Sum_probs=66.6

Q ss_pred             CCCCCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412           71 LPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        71 ~p~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      +..+..|.|+|.++|+|.+++.+++.+.|+|+|+++.+||||||||+|++|+|||+.|+|.||+++.|.|
T Consensus         3 ~~~~~~l~i~P~~~l~F~~~~~~~~~~~l~l~N~t~~~vaFKvktT~p~~y~VrP~~G~i~p~~t~~i~v   72 (218)
T KOG0439|consen    3 LETESLLEIEPSDELVFPLPLNEQVKCSLTLKNPTKLRVAFKVKTTAPKLYCVRPNGGVIDPGSTVEIEV   72 (218)
T ss_pred             ccccCccccCCCceEEeccCCCceEEEEEEEecCCCCceEEEEEcCCCCeEEEcCCcceECCCCcEEEEE
Confidence            4567889999988999999999999999999999999999999999999999999999999999999986

>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion]

Probab=99.57  E-value=5e-15  Score=121.81  Aligned_cols=63  Identities=25%  Similarity=0.426  Sum_probs=58.7

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        76 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      .|+|+|  ++.|..++..+.++.+.|.|.+..+|+||||||+|+.||||||.|+|+|++++.|.|
T Consensus         2 aveisp--~~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeV   64 (242)
T COG5066           2 AVEISP--QTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEV   64 (242)
T ss_pred             ceEecC--ceEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEE
Confidence            378888  677777888999999999999999999999999999999999999999999999987

>PF14874 PapD-like: Flagellar-associated PapD-like

Probab=98.56  E-value=6.1e-07  Score=62.88  Aligned_cols=64  Identities=30%  Similarity=0.446  Sum_probs=56.3

Q ss_pred             cEEecCCCceEeeC-CCCCeeEEEEEEECCCCCeEEEEEeeCC--CceeEecCCcceeCCCCEEEEEc
Q 032412           76 RLRLDPSNNLYFPY-EPGKQTRSAVRLKNTSKSHVAFKFQTTA--PKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        76 ~L~IdP~~eL~F~~-e~~k~v~s~L~LtN~S~~~VAFKVKTTa--Pk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      .|.++|. +|.|-. ..|......|+|+|.+..+..|+|+.-.  ...|.|.|..|+|+||+++.+.|
T Consensus         3 ~l~v~P~-~ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V   69 (102)
T PF14874_consen    3 TLEVSPK-ELDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEV   69 (102)
T ss_pred             EEEEeCC-EEEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEE
Confidence            5899996 999974 5678889999999999999999997543  57899999999999999999887

>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors

Probab=95.96  E-value=0.037  Score=39.95  Aligned_cols=60  Identities=18%  Similarity=0.299  Sum_probs=49.2

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCC---C------ceeEecCCcceeCCCCEEEEEc
Q 032412           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA---P------KSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        77 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTa---P------k~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      |.|+|. .+.|..   .+....++|+|.++.++.+.+....   .      +-|.|-|+.-.|+||+...|.|
T Consensus         2 i~i~~t-rii~~~---~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv   70 (122)
T PF00345_consen    2 IQISPT-RIIFNE---SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV   70 (122)
T ss_dssp             EEESSS-EEEEET---TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE
T ss_pred             EEEccE-EEEEeC---CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE
Confidence            678896 788874   2347899999999999999987654   1      2699999999999999988875

Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....

>PF14646 MYCBPAP: MYCBP-associated protein family

Probab=92.71  E-value=0.6  Score=41.12  Aligned_cols=63  Identities=21%  Similarity=0.402  Sum_probs=51.6

Q ss_pred             EecCCCceEeeCCCCCeeEEEEE-EECCCCCeEEEEEeeCC------------CceeEecCCcceeCCCCEEEEEc
Q 032412           78 RLDPSNNLYFPYEPGKQTRSAVR-LKNTSKSHVAFKFQTTA------------PKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        78 ~IdP~~eL~F~~e~~k~v~s~L~-LtN~S~~~VAFKVKTTa------------Pk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      .+.+.-.|.|.-.++..+...|. |.|.+..-|-|..+--.            ...|......|+|.||++..+.|
T Consensus       232 ~~~~~~~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~  307 (426)
T PF14646_consen  232 EVSISIRLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPF  307 (426)
T ss_pred             ccCcceEEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEE
Confidence            34444589999988887777777 99999999999876433            45799999999999999999876

>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini

Probab=92.18  E-value=0.6  Score=29.01  Aligned_cols=41  Identities=22%  Similarity=0.139  Sum_probs=33.6

Q ss_pred             EEEECCCCCeE-EEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412           99 VRLKNTSKSHV-AFKFQTTAPKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        99 L~LtN~S~~~V-AFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      ++|+|.++.++ ..+|+| +=+...+......|+||++..|.|
T Consensus         2 F~~~N~g~~~L~I~~v~t-sCgCt~~~~~~~~i~PGes~~i~v   43 (45)
T PF07610_consen    2 FEFTNTGDSPLVITDVQT-SCGCTTAEYSKKPIAPGESGKIKV   43 (45)
T ss_pred             EEEEECCCCcEEEEEeeE-ccCCEEeeCCcceECCCCEEEEEE
Confidence            57999999955 456666 557888888889999999999987

>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A

Probab=91.38  E-value=0.85  Score=32.84  Aligned_cols=45  Identities=11%  Similarity=0.286  Sum_probs=31.2

Q ss_pred             EEEEEEECCCCCeEEEEEeeCCCceeEe-cCCcce-eCCCCEEEEEc
Q 032412           96 RSAVRLKNTSKSHVAFKFQTTAPKSCYM-RPPGGV-LAPGDSIIATG  140 (141)
Q Consensus        96 ~s~L~LtN~S~~~VAFKVKTTaPk~Y~V-RP~~Gi-I~Pgesv~ItV  140 (141)
                      ...|+|.|.+.++..|.|+...+..+.+ .|...+ |+||++..+.|
T Consensus        34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v   80 (118)
T PF11614_consen   34 QYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPV   80 (118)
T ss_dssp             EEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEE
T ss_pred             EEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEE
Confidence            4899999999999999999988888888 665555 88999887654

>PRK09918 putative fimbrial chaperone protein; Provisional

Probab=90.39  E-value=1.8  Score=35.37  Aligned_cols=61  Identities=16%  Similarity=0.178  Sum_probs=46.3

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCC-----ceeEecCCcceeCCCCEEEEEc
Q 032412           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAP-----KSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        76 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP-----k~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      -|.++|. .+.|..   ++....++|+|.++.++.........     .-|.|-|+.-.|+||+...|.|
T Consensus        25 ~v~l~~t-Rvi~~~---~~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRi   90 (230)
T PRK09918         25 GMVPETS-VVIVEE---SDGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRF   90 (230)
T ss_pred             eEEEccE-EEEEEC---CCCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEE
Confidence            5888885 777764   33457999999999876665543221     2599999999999999988875

>PRK09926 putative chaperone protein EcpD; Provisional

Probab=84.77  E-value=5.9  Score=32.71  Aligned_cols=63  Identities=13%  Similarity=0.156  Sum_probs=47.0

Q ss_pred             CCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCc----------eeEecCCcceeCCCCEEEEEc
Q 032412           74 RRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPK----------SCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        74 ~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk----------~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      ---|.|+|. .+.|+.   ++-...|.|.|.++.++.--.-..+.+          -|.|-|+.--|+||+...|.|
T Consensus        24 ~A~i~l~~T-RvI~~~---~~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRI   96 (246)
T PRK09926         24 IADIVISGT-RIIYKS---DQKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKL   96 (246)
T ss_pred             eeeEEeCce-EEEEeC---CCceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEE
Confidence            345899996 888874   334579999999998766555432211          299999999999999888775

>PRK15249 fimbrial chaperone protein StbB; Provisional

Probab=83.01  E-value=7.3  Score=32.41  Aligned_cols=62  Identities=16%  Similarity=0.189  Sum_probs=44.8

Q ss_pred             CcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCC------C-----ceeEecCCcceeCCCCEEEEEc
Q 032412           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA------P-----KSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        75 ~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTa------P-----k~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      --|.|+|. .+.|+..   .....|+|.|.++.++....-+.+      |     .-|.|-|+.--|+||+...|.|
T Consensus        28 A~l~l~~T-Rviy~~~---~~~~sl~l~N~~~~p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI  100 (253)
T PRK15249         28 ASVTILGS-RIIYPST---ASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRV  100 (253)
T ss_pred             eEEEeCce-EEEEeCC---CcceeEEEEcCCCCcEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEE
Confidence            35889995 7888632   245789999999886554442211      1     1399999999999999988875

>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B

Probab=80.87  E-value=4  Score=36.80  Aligned_cols=50  Identities=22%  Similarity=0.337  Sum_probs=37.1

Q ss_pred             CCCeeEEEEEEECCCCCeEEEEEeeCC------C-ceeEecCCcce--------------eCCCCEEEEEc
Q 032412           91 PGKQTRSAVRLKNTSKSHVAFKFQTTA------P-KSCYMRPPGGV--------------LAPGDSIIATG  140 (141)
Q Consensus        91 ~~k~v~s~L~LtN~S~~~VAFKVKTTa------P-k~Y~VRP~~Gi--------------I~Pgesv~ItV  140 (141)
                      +|+..+-.++++|.++++|-.+==+|+      | +.|...|...-              |+||||..|.|
T Consensus       280 PGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v  350 (399)
T TIGR03079       280 PGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKM  350 (399)
T ss_pred             CCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEE
Confidence            689999999999999999988744444      4 44444444422              88999988876

Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.

>PRK15295 fimbrial assembly chaperone SthB; Provisional

Probab=80.51  E-value=11  Score=30.82  Aligned_cols=59  Identities=15%  Similarity=0.200  Sum_probs=43.5

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEee--CC-------CceeEecCCcceeCCCCEEEEEc
Q 032412           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQT--TA-------PKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        76 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKT--Ta-------Pk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      -|.|++. .+.|+..   .-...|.|.|.++.++.  |++  .+       ..-|.|-|+.--|+||+...|.|
T Consensus        20 ~i~l~~T-RvI~~~~---~~~~si~i~N~~~~p~L--vQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI   87 (226)
T PRK15295         20 SIVVGGT-RLVFDGN---NDESSINVENKDSKANL--VQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRV   87 (226)
T ss_pred             cEEeCce-EEEEeCC---CceeEEEEEeCCCCcEE--EEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEE
Confidence            4888885 7777642   34579999999988543  442  11       12499999999999999988875

>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=80.31  E-value=4.3  Score=28.97  Aligned_cols=25  Identities=16%  Similarity=0.331  Sum_probs=18.4

Q ss_pred             CCeeEEEEEEECCCCCeEEEEEeeC
Q 032412           92 GKQTRSAVRLKNTSKSHVAFKFQTT  116 (141)
Q Consensus        92 ~k~v~s~L~LtN~S~~~VAFKVKTT  116 (141)
                      +...+..|+|+|.+++.+.|+|.-.
T Consensus         7 ~~~~~~~itl~N~~~~~~ty~~~~~   31 (112)
T PF06280_consen    7 GNKFSFTITLHNYGDKPVTYTLSHV   31 (112)
T ss_dssp             -SEEEEEEEEEE-SSS-EEEEEEEE
T ss_pred             CCceEEEEEEEECCCCCEEEEEeeE
Confidence            3446789999999999999998654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	141
2cri_A	147	Vesicle-associated membrane protein-associated pro	9e-19
1z9l_A	128	Vesicle-associated membrane protein-associated pro	1e-18
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	2e-17
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	1e-15
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	2e-09
1row_A	109	SSP-19, MSP-domain protein like family member; bet	3e-07
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	3e-05

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147

 Score = 76.3 bits (187), Expect = 9e-19
 Identities = 22/74 (29%), Positives = 37/74 (50%)

Query: 64  SYVARSLLPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYM 123
           S  +  +    + L LDP ++L F         + ++L+N S   V FK +TTAP+   +
Sbjct: 2   SSGSSGMAKHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCV 61

Query: 124 RPPGGVLAPGDSII 137
           RP  G++ PG  + 
Sbjct: 62  RPNSGIIDPGSIVT 75

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128

 Score = 75.4 bits (185), Expect = 1e-18
 Identities = 22/66 (33%), Positives = 34/66 (51%)

Query: 72  PPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLA 131
              + L LDP ++L F         + ++L+N S   V FK +TTAP+   +RP  GV+ 
Sbjct: 6   KHEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVID 65

Query: 132 PGDSII 137
           PG  + 
Sbjct: 66  PGSIVT 71

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152

 Score = 72.8 bits (178), Expect = 2e-17
 Identities = 21/61 (34%), Positives = 33/61 (54%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L + P+  LYF      + ++ + L N +K+ VAFK +TTAP+   ++P      PG SI
Sbjct: 19  LHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASI 78

Query: 137 I 137
            
Sbjct: 79  D 79

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126

 Score = 67.2 bits (164), Expect = 1e-15
 Identities = 13/67 (19%), Positives = 27/67 (40%)

Query: 73  PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAP 132
           P   +   PS  + F      +    +++ N     + +  +TT  +   + PP GVL P
Sbjct: 5   PPGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDP 64

Query: 133 GDSIIAT 139
            + ++  
Sbjct: 65  KEKVLMA 71

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116

 Score = 51.0 bits (122), Expect = 2e-09
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           + +DP     +P   G  T     + + S S +AFK +++  +   +RP  G +      
Sbjct: 11  INVDPPT-GNYPATGGNST---HNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKS 66

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109

 Score = 45.2 bits (107), Expect = 3e-07
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L  DP      P      T    +L N     + FK +++      + P  G + P  S 
Sbjct: 3   LTADPPA-CTVPAAGVSST---HKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSK 58

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 122

 Score = 39.9 bits (93), Expect = 3e-05
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 76  RLRLDPSNNLYFPYEPGKQTRSA-VRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGD 134
           R  LD  + L F   P K +    + ++N    +  F  +T  P    + P  G L  G+
Sbjct: 23  RAILDFPDKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTCRP--FSIEPAIGTLNVGE 80

Query: 135 SI 136
           S+
Sbjct: 81  SM 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	141
1msp_A	126	MSP, major sperm protein; cytoskeletal protein, ce	99.89
1z9l_A	128	Vesicle-associated membrane protein-associated pro	99.89
2cri_A	147	Vesicle-associated membrane protein-associated pro	99.89
1wic_A	152	Hypothetical protein riken cDNA 6030424E15; beta s	99.89
1row_A	109	SSP-19, MSP-domain protein like family member; bet	99.84
1m1s_A	116	WR4; structural genomics, major sperm protein, bio	99.82
2ys4_A	122	Hydrocephalus-inducing protein homolog; hydin, PAP	98.27
3qbt_B	140	Inositol polyphosphate 5-phosphatase OCRL-1; prote	97.95
2e6j_A	112	Hydin protein; PAPD, structural genomics, NPPSFA,	97.9
3qis_A	366	Inositol polyphosphate 5-phosphatase OCRL-1; DENT	97.43
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	96.49
2qsv_A	220	Uncharacterized protein; MCSG, structural genomics	95.72
3q48_A	257	Chaperone CUPB2; IG fold, periplasmic chaperone; 2	83.2
1yew_A	382	Particulate methane monooxygenase, B subunit; memb	81.23

>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A

Probab=99.89  E-value=1.8e-23  Score=154.99  Aligned_cols=66  Identities=18%  Similarity=0.391  Sum_probs=63.9

Q ss_pred             CcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412           75 RRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        75 ~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      ..|.++|.++|.|++++++++++.|+|+|+++++||||||||+|++|+|||++|+|+||+++.|.|
T Consensus         7 ~~l~i~P~~~l~F~~p~~~~~~~~l~l~N~s~~~vaFKVKTT~p~~y~VrP~~Gii~P~~s~~v~V   72 (126)
T 1msp_A            7 GDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLDPKEKVLMAV   72 (126)
T ss_dssp             CCEEEESSSCEEEESCCSSCCCEEEEEEECSSSCEEEEEEESCTTTEEEESCEEEECTTCEEEEEE
T ss_pred             CeEEEcCCCeEEEcCcCCcceEEEEEEECCCCCeEEEEEEcCCCCcEEEECCCeEECCCCEEEEEE
Confidence            369999999999999999999999999999999999999999999999999999999999999987

>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A

Probab=99.89  E-value=2.3e-23  Score=153.43  Aligned_cols=68  Identities=32%  Similarity=0.530  Sum_probs=65.4

Q ss_pred             CCCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412           73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        73 ~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      .+++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||+++.|.|
T Consensus         7 ~~~~L~i~P~~~l~F~~p~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~y~VrP~~G~i~P~~s~~v~V   74 (128)
T 1z9l_A            7 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSV   74 (128)
T ss_dssp             CCCCSEEESSSEEEEESCCSSCEEEEEEEECCSSSCEEEEEEESCGGGEEEESCEEEECTTCEEEEEE
T ss_pred             CCCeEEECCCCeEEEcCCCCceEEEEEEEECCCCCeEEEEEECCCCCceEEeCCCcEECCCCeEEEEE
Confidence            46789999988999999999999999999999999999999999999999999999999999999987

>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.89  E-value=2.3e-23  Score=157.45  Aligned_cols=68  Identities=31%  Similarity=0.528  Sum_probs=65.5

Q ss_pred             CCCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412           73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        73 ~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      .+++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||+++.|.|
T Consensus        11 ~~~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V   78 (147)
T 2cri_A           11 HEQILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSV   78 (147)
T ss_dssp             CCCCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEE
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEE
Confidence            46789999988999999999999999999999999999999999999999999999999999999987

>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2

Probab=99.89  E-value=2e-23  Score=159.40  Aligned_cols=68  Identities=31%  Similarity=0.471  Sum_probs=65.5

Q ss_pred             CCCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412           73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        73 ~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      .+++|.|+|.++|.|.+++++++++.|+|+|+++.+||||||||+|++|+|||+.|+|+||++++|.|
T Consensus        15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V   82 (152)
T 1wic_A           15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIV   82 (152)
T ss_dssp             CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEE
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEE
Confidence            56789999988999999999999999999999999999999999999999999999999999999987

>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.84  E-value=2.5e-21  Score=141.44  Aligned_cols=60  Identities=22%  Similarity=0.270  Sum_probs=56.4

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        77 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      |.|+|. +|.|.++.+   .+.|+|+|+++++||||||||+|++|||||+.|+|+||++++|.|
T Consensus         3 L~i~P~-~l~F~~~~~---~~~l~L~N~t~~~vaFKVKtT~p~~y~VrP~~G~I~P~~~~~i~I   62 (109)
T 1row_A            3 LTADPP-ACTVPAAGV---SSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVI   62 (109)
T ss_dssp             CEEESS-SEEEETTCE---EEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEE
T ss_pred             EEEECC-EeEEeCCCC---eEEEEEEcCCCCeEEEEEEeCCCCceEEcCCceEECCCCeEEEEE
Confidence            789997 699998843   699999999999999999999999999999999999999999987

>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2

Probab=99.82  E-value=2.4e-20  Score=138.38  Aligned_cols=61  Identities=21%  Similarity=0.325  Sum_probs=57.3

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        76 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      ++.++|. +|.|+++.|   .+.|+|+|+++++||||||||+|++|||||+.|+|+||++++|.|
T Consensus        10 ~~~~~p~-~l~F~~~gg---~~~l~L~N~t~~~vAFKVKtT~p~~YrVrP~~G~I~Pg~~~~I~I   70 (116)
T 1m1s_A           10 MINVDPP-TGNYPATGG---NSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDI   70 (116)
T ss_dssp             SEEEESS-EEEECTTCE---EEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEE
T ss_pred             eeecCCC-eEEEecCCC---EEEEEEECCCCCeEEEEEEecCCCceEEcCCceEECCCCeEEEEE
Confidence            6889996 999998753   799999999999999999999999999999999999999999987

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=2.3e-06  Score=61.30  Aligned_cols=61  Identities=21%  Similarity=0.342  Sum_probs=51.6

Q ss_pred             cEEecCCCceEeeCC-CCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412           76 RLRLDPSNNLYFPYE-PGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        76 ~L~IdP~~eL~F~~e-~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      .|.+ | +.|.|..- -+...+..+.|+|.++.++.|++++.  .-|.|.|..|.|+||+++.|+|
T Consensus        25 ~l~~-p-~~l~fg~~~v~~~~~~~~~l~N~g~~~~~f~~~~~--~~F~i~P~~g~L~pg~~~~i~V   86 (122)
T 2ys4_A           25 ILDF-P-DKLNFSTCPVKYSTQKILLVRNIGNKNAVFHIKTC--RPFSIEPAIGTLNVGESMQLEV   86 (122)
T ss_dssp             CCCC-C-SEECCCSEESSSCEEEEEEEECCSSSCEEEEEECC--TTEEEESSEEEECTTCEEEEEE
T ss_pred             EECC-C-CeeecCCeecCCeEEEEEEEEECCCCCEEEEEecC--CCeEEECCcCEECCCCEEEEEE
Confidence            3444 5 58888753 46678899999999999999999984  4699999999999999999987

>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}

Probab=97.95  E-value=3.8e-05  Score=57.08  Aligned_cols=65  Identities=15%  Similarity=0.234  Sum_probs=55.2

Q ss_pred             CcEEecCCCceEeeC-CCCCeeEEEEEEECCCCCeEEEEEeeC------CCceeEecCCcceeCCCCEEEEEc
Q 032412           75 RRLRLDPSNNLYFPY-EPGKQTRSAVRLKNTSKSHVAFKFQTT------APKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        75 ~~L~IdP~~eL~F~~-e~~k~v~s~L~LtN~S~~~VAFKVKTT------aPk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      ..|.+++. +|.|-. .+++..+..|+|+|++.-+..|++.-.      .+..+.|.|..|.|.||+++.|.|
T Consensus        25 P~i~v~~~-~ldFG~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~Pge~~~I~v   96 (140)
T 3qbt_B           25 PSLELSRR-EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISL   96 (140)
T ss_dssp             CCEEESCC-EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEE
T ss_pred             CceEeeee-eEEeeeceeeeeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccCCCCeeEEEE
Confidence            46888885 999973 567778999999999999999999752      345799999999999999999886

>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.90  E-value=2.7e-05  Score=53.95  Aligned_cols=65  Identities=12%  Similarity=0.149  Sum_probs=53.8

Q ss_pred             CcEEecCCCceEeeC-CCCCeeEEEEEEECCCCCeEEEEEeeCCC---ceeEecCCcceeCCCCEEEEEc
Q 032412           75 RRLRLDPSNNLYFPY-EPGKQTRSAVRLKNTSKSHVAFKFQTTAP---KSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        75 ~~L~IdP~~eL~F~~-e~~k~v~s~L~LtN~S~~~VAFKVKTTaP---k~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      ..+.+++. .|.|-. ..+...+..++|+|+++-++.|++.....   ..|.+.|..|.|+||++..|.|
T Consensus         8 P~i~~~~~-~ldFG~v~~g~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~pg~~~~i~V   76 (112)
T 2e6j_A            8 PKIHFNFE-LLDIGKVFTGSAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIEPSGVQAIQI   76 (112)
T ss_dssp             CSEEESCS-EEEEEEEESSCCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEECTTBCCEEEE
T ss_pred             CEEEECcc-cEecEeEEECCEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEECCCCEEEEEE
Confidence            45889985 788864 34667889999999999999999964221   5699999999999999999887

>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A

Probab=97.43  E-value=0.00051  Score=57.89  Aligned_cols=67  Identities=15%  Similarity=0.199  Sum_probs=54.9

Q ss_pred             CCCcEEecCCCceEee-CCCCCeeEEEEEEECCCCCeEEEEEeeC------CCceeEecCCcceeCCCCEEEEEc
Q 032412           73 PRRRLRLDPSNNLYFP-YEPGKQTRSAVRLKNTSKSHVAFKFQTT------APKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        73 ~~~~L~IdP~~eL~F~-~e~~k~v~s~L~LtN~S~~~VAFKVKTT------aPk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      ....|.|++. +|.|. -.++...+..|+|+|++.-++.|++...      .+..+.|.|..|.|.||+++.|.|
T Consensus        26 ~~P~v~v~~~-~idFg~v~~~~~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l~Pge~~~i~l   99 (366)
T 3qis_A           26 FLPSLELSRR-EFVFENVKFRQLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLEPNETVDISL   99 (366)
T ss_dssp             --CCEEESCS-EEEEEEECBTCCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEECTTCEEEEEE
T ss_pred             cCCeEEEecC-eEEeeeeeeCCeEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEECCCCEEEEEE
Confidence            3456889985 99996 3677889999999999999999999753      233478999999999999999876

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=96.49  E-value=0.01  Score=46.16  Aligned_cols=63  Identities=16%  Similarity=0.181  Sum_probs=53.2

Q ss_pred             cEEecCCCceEeeC-CCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412           76 RLRLDPSNNLYFPY-EPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        76 ~L~IdP~~eL~F~~-e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      .|++++. .+.|.. +.|+.....+.++|+++.++-++.-.. |..+.+++..+.|+||++..|.|
T Consensus         2 ~i~~~~~-~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-p~~~~~~~~~~~I~PG~~g~I~v   65 (220)
T 2qsv_A            2 PLQVSNA-RLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-PSFVSLDDRAFRLQAREPRELNL   65 (220)
T ss_dssp             CEEESCS-EEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-CTTEECSCCEEEECSSSCEEEEE
T ss_pred             ceEEecC-eeEcccccCCCcceEEEEEEeCCCCceEEEeccC-CCceEeeeCcceeCCCCceEEEE
Confidence            3899995 999985 446667779999999999999987543 88889999999999999988876

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}

Probab=95.72  E-value=0.041  Score=42.68  Aligned_cols=64  Identities=17%  Similarity=0.247  Sum_probs=53.8

Q ss_pred             CCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEE-EEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412           74 RRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAF-KFQTTAPKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        74 ~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAF-KVKTTaPk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      ...|.++ . .+.|-.=.|+..+..++|+|..+.++.+ +|++++ +...+.+..+.|+||++..|.|
T Consensus       117 ~~~i~~~-~-~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~sc-gct~~~~~~~~i~PGe~~~i~v  181 (220)
T 2qsv_A          117 TGVMELS-T-YLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTTRN-PALTAVPDRTEIKPGGSTLLRI  181 (220)
T ss_dssp             CCCEECC-C-EEEEEECTTSCEEEEEEEEECSSSCEEEEEEEECS-TTEEEEESCSEECTTCEEEEEE
T ss_pred             CCEEEEE-e-EEeeeccCCCeEEEEEEEEECCCCCEEEEEEEeCC-CCEeeecCCccCCCCCEEEEEE
Confidence            4468888 4 8888732278888999999999999888 888765 7889999999999999999887

>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}

Probab=83.20  E-value=3  Score=33.61  Aligned_cols=61  Identities=18%  Similarity=0.221  Sum_probs=43.4

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCC------C----ceeEecCCcceeCCCCEEEEEc
Q 032412           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTA------P----KSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        76 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTa------P----k~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      -|.|+|. .+.|+..   +....|+|+|.++.++.-.+-..+      |    .-|.|-|+.-.|+||+.-.|.|
T Consensus        29 ~v~i~~T-RvIy~~~---~k~~sl~l~N~~~~P~LvQsWid~~~~~~~p~~~~~pfivtPPl~rl~pg~~q~lRI   99 (257)
T 3q48_A           29 GLIAQGT-RVVFPAS---EREVTLRVSNTSGTPVLAQAWIDDGRQDVPPEELQVPFSVTPAVTRVEPNGGAVLRI   99 (257)
T ss_dssp             --CCSCS-EEEEETT---CSEEEEEEEECSSSCEEEEEEEESSCCSSCGGGGCCSEEEESSEEEECTTEEEEEEE
T ss_pred             eEEEcce-EEEEeCC---CcEEEEEEEeCCCCeEEEEEEEEcCCCccCcccccCCEEEcCCEEEECCCCceEEEE
Confidence            4778885 7777643   234799999999987665543221      1    1399999999999999888765

>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A

Probab=81.23  E-value=9.3  Score=33.15  Aligned_cols=67  Identities=19%  Similarity=0.275  Sum_probs=48.7

Q ss_pred             CCCCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEe---------cCC------------ccee
Q 032412           72 PPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYM---------RPP------------GGVL  130 (141)
Q Consensus        72 p~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~V---------RP~------------~GiI  130 (141)
                      +....+.++-. .-.|.. +|+..+-.++++|.++++|-.+==+|+.-+|.-         -|.            ..=|
T Consensus       245 ~~~~~V~~~v~-~A~Y~v-pgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI  322 (382)
T 1yew_A          245 LPAPTVSVKVE-DATYRV-PGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPL  322 (382)
T ss_dssp             CCCCSEEEEEE-EEEEES-SCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCB
T ss_pred             CCCCceEEEee-ccEEec-CCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCc
Confidence            34556777774 666664 588999999999999999988866667766643         221            1228


Q ss_pred             CCCCEEEEEc
Q 032412          131 APGDSIIATG  140 (141)
Q Consensus       131 ~Pgesv~ItV  140 (141)
                      +|||+..|.|
T Consensus       323 ~PGETr~~~v  332 (382)
T 1yew_A          323 APGETRTVDV  332 (382)
T ss_dssp             CTTCEEEEEE
T ss_pred             CCCceeEEEE
Confidence            9999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	141
d1wica_	152	b.1.11.2 (A:) MSP domain containing protein 2, Mos	8e-16
d1grwa_	124	b.1.11.2 (A:) Major sperm protein, MSP {Nematode (	2e-14
d1m1sa_	109	b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan	2e-12
d1rowa_	107	b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele	6e-12

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.3 bits (164), Expect = 8e-16
 Identities = 21/63 (33%), Positives = 33/63 (52%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L + P+  LYF      + ++ + L N +K+ VAFK +TTAP+   ++P      PG SI
Sbjct: 19  LHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASI 78

Query: 137 IAT 139
              
Sbjct: 79  DII 81

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 63.4 bits (154), Expect = 2e-14
 Identities = 14/67 (20%), Positives = 30/67 (44%)

Query: 73  PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAP 132
           P   ++  P   + F      +    +++ N+S   + +  +TT  K   + PP GVL P
Sbjct: 3   PPGDIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDP 62

Query: 133 GDSIIAT 139
            ++++  
Sbjct: 63  KEAVLLA 69

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 57.9 bits (140), Expect = 2e-12
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           + +DP     +P   G  T     + + S S +AFK +++  +   +RP  G +      
Sbjct: 4   INVDP-PTGNYPATGGNST---HNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKS 59

Query: 137 IAT 139
              
Sbjct: 60  KLD 62

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.0 bits (135), Expect = 6e-12
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 77  LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSI 136
           L  DP         P     S  +L N     + FK +++      + P  G + P  S 
Sbjct: 1   LTADPPACTV----PAAGVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSK 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	141
d1grwa_	124	Major sperm protein, MSP {Nematode (Caenorhabditis	99.85
d1wica_	152	MSP domain containing protein 2, Mospd2 {Mouse (Mu	99.85
d1m1sa_	109	WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623	99.79
d1rowa_	107	SSP-19 {Nematode (Caenorhabditis elegans) [TaxId:	99.75
d1p5va1	141	Chaperone protein Caf1m {Yersinia pestis [TaxId: 6	90.96
d2co7b1	128	Periplasmic chaperone SafB {Salmonella typhimurium	90.16
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	87.9
d2j2za1	124	Pilus chaperone PapD, N-domain {Escherichia coli [	84.41

>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: Major sperm protein, MSP
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.85  E-value=1.1e-21  Score=143.83  Aligned_cols=69  Identities=22%  Similarity=0.451  Sum_probs=65.4

Q ss_pred             CCCCCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412           71 LPPRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        71 ~p~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      +|++ .|.++|.++|.|++++++.+++.|+|+|.++.+||||||||+|++|+|||+.|+|+||+++.|.|
T Consensus         2 ~p~~-~l~i~P~~~L~F~~p~~~~~~~~l~l~N~s~~~vafKvktt~p~~y~v~P~~G~i~p~~~~~i~V   70 (124)
T d1grwa_           2 VPPG-DIQTQPGTKIVFNAPYDDKHTYHIKVINSSARRIGYGIKTTNMKRLGVDPPCGVLDPKEAVLLAV   70 (124)
T ss_dssp             CCCC-CEEEESSSCEEEESCCSSCEEEEEEEEECSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEE
T ss_pred             cCCC-ceEECCCCeEEEecCCCcEEEEEEEEECCCCCeEEEEEEeCCCceEEEECCCCEECCCCEEEEEE
Confidence            3555 59999999999999999999999999999999999999999999999999999999999999987

>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=5.3e-22  Score=149.85  Aligned_cols=68  Identities=31%  Similarity=0.471  Sum_probs=65.2

Q ss_pred             CCCcEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412           73 PRRRLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        73 ~~~~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      .+.+|.|+|.++|.|.+++++++++.|+|+|.++++||||||||+|++|+|||+.|+|+||+++.|.|
T Consensus        15 ~~~lL~i~P~~~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v   82 (152)
T d1wica_          15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIV   82 (152)
T ss_dssp             CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEE
T ss_pred             CCCeEEEcCCCCeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEE
Confidence            36789999998999999999999999999999999999999999999999999999999999999987

>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: WR4
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.79  E-value=1.3e-19  Score=130.36  Aligned_cols=61  Identities=21%  Similarity=0.325  Sum_probs=57.2

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        76 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      +|.|+|. +|.|++++|   .+.++|+|.++.+||||||||+|++|+|+|++|+|+||++++|.|
T Consensus         3 ~L~i~P~-~l~F~~~~g---~~~~~l~N~s~~~vafKiktt~~~~y~V~P~~G~I~P~~~~~i~I   63 (109)
T d1m1sa_           3 MINVDPP-TGNYPATGG---NSTHNITSESDSRLAFKVKSSNNEHYRVRPVYGFVDAKGKSKLDI   63 (109)
T ss_dssp             SEEEESS-EEEECTTCE---EEEEEEEECSSSEEEEEEEESCTTTEEEECSEEEECTTCEEEEEE
T ss_pred             eEEEeCC-EEEeecCCC---cEEEEEECCCCCcEEEEEEcCCCCeEEEeCCeeEECCCCeEEEEE
Confidence            6999996 999997764   578999999999999999999999999999999999999999987

>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: SSP-19
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.75  E-value=8.8e-19  Score=126.07  Aligned_cols=60  Identities=22%  Similarity=0.289  Sum_probs=55.8

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAPKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        77 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      |.+||. +|.|+...   ..+.|+|+|.++.+||||||||+|++|+|+|+.|+|+||+++.|.|
T Consensus         1 l~~dP~-~~~f~~~~---g~~~~~l~N~s~~~vafKvKtt~~~~y~V~P~~G~i~P~~~~~I~I   60 (107)
T d1rowa_           1 LTADPP-ACTVPAAG---VSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVI   60 (107)
T ss_dssp             CEEESS-SEEEETTC---EEEEEEEEECSSSCEEEEEEESCSSSEEEECSEEEECTTEEEEEEE
T ss_pred             CeeCCC-cceeeCCC---CeEEEEEEcCCCCeEEEEEEcCCCCeEEEECCEEEECCCCEEEEEE
Confidence            679997 89998665   5689999999999999999999999999999999999999999987

>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Chaperone protein Caf1m
species: Yersinia pestis [TaxId: 632]

Probab=90.96  E-value=0.53  Score=32.86  Aligned_cols=61  Identities=16%  Similarity=0.169  Sum_probs=46.7

Q ss_pred             cEEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeCCC-------ceeEecCCcceeCCCCEEEEEc
Q 032412           76 RLRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTTAP-------KSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        76 ~L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTTaP-------k~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      -|.|+.. .+.|+..   .-...++|+|.++.++...+...+.       .-|.|-|+.-.|+||+...|.|
T Consensus         7 Gv~l~~T-RvIy~~~---~~~~s~~v~N~~~~p~lvQ~wv~~~~~~~~~~~pfivtPPl~rl~p~~~~~lRI   74 (141)
T d1p5va1           7 GVTIGES-RIIYPLD---AAGVMVSVKNTQDYPVLIQSRIYDENKEKESEDPFVVTPPLFRLDAKQQNSLRI   74 (141)
T ss_dssp             EEEESCS-EEEEETT---CSCEEEEEEECSSSCEEEEEEECC---------CEEEESSEEEECTTCEEEEEE
T ss_pred             eeEeCcc-EEEEcCC---CcEEEEEEEeCCCCCEEEEEEEEcCCCCcCCCCCeEEcCCeEEECCCCceEEEE
Confidence            3677885 7778743   2356899999999998888765432       1299999999999999988876

>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Periplasmic chaperone SafB
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.16  E-value=0.51  Score=32.27  Aligned_cols=60  Identities=10%  Similarity=0.158  Sum_probs=45.2

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEECCCCCeEEEEEeeC-----CCceeEecCCcceeCCCCEEEEEc
Q 032412           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKSHVAFKFQTT-----APKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        77 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~~VAFKVKTT-----aPk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      |.|+.. .+.|...   +-...++|+|.++.++-..+...     ...-|.|-|+.--|+||+...|.|
T Consensus         7 v~l~~T-Rvi~~~~---~~~~sv~l~N~~~~p~lvQ~~v~~~~~~~~~~fivtPPl~rl~p~~~q~vRI   71 (128)
T d2co7b1           7 VKLGAT-RVIYHAG---TAGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRI   71 (128)
T ss_dssp             CEESCS-EEEEETT---SSCEEEEEECCSSSCEEEEEEEEETTSSSBCSEEEESSEEEECTTCEEEEEE
T ss_pred             EEECCe-EEEEcCC---CCEEEEEEEeCCCCcEEEEEEEEcCCCCccCCEEEeCceeEECCCCceEEEE
Confidence            677885 7788632   23578999999999776665432     223599999999999999988765

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=87.90  E-value=0.27  Score=32.88  Aligned_cols=52  Identities=25%  Similarity=0.253  Sum_probs=43.4

Q ss_pred             CCCCCeeEEEEEEECCCCCeEE-EEEeeCCCceeEecCCcceeCCCCEEEEEc
Q 032412           89 YEPGKQTRSAVRLKNTSKSHVA-FKFQTTAPKSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        89 ~e~~k~v~s~L~LtN~S~~~VA-FKVKTTaPk~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      .++|+.+...++|+|.....+. .++--..|.-..+.|..--|+||++..+++
T Consensus        13 v~pG~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~~~~~L~pG~s~~~~~   65 (103)
T d1w8oa1          13 LEPGQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQGSVEPLMPGRQAKGQV   65 (103)
T ss_dssp             ECTTCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEEEECCBCTTCEEEEEE
T ss_pred             eCCCCeEEEEEEEEeCCCCceeeeeEEEcCCCCccccCcceeeCCCCcEEEEE
Confidence            3478899999999999988653 466667899999998888899999988765

>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: Pilus chaperone
domain: Pilus chaperone PapD, N-domain
species: Escherichia coli [TaxId: 562]

Probab=84.41  E-value=3  Score=28.03  Aligned_cols=60  Identities=17%  Similarity=0.197  Sum_probs=41.0

Q ss_pred             EEecCCCceEeeCCCCCeeEEEEEEECCCCC-eEEEEEee--CCC-----ceeEecCCcceeCCCCEEEEEc
Q 032412           77 LRLDPSNNLYFPYEPGKQTRSAVRLKNTSKS-HVAFKFQT--TAP-----KSCYMRPPGGVLAPGDSIIATG  140 (141)
Q Consensus        77 L~IdP~~eL~F~~e~~k~v~s~L~LtN~S~~-~VAFKVKT--TaP-----k~Y~VRP~~GiI~Pgesv~ItV  140 (141)
                      |.|+.. .+.|...   +-...++|+|.+++ ++-.....  .+.     .-|.|-|+.--|+||+.-.|.|
T Consensus         2 i~l~~T-RvI~~~~---~~~~~i~v~N~~~~~p~LvQswv~~~~~~~~~~~~fivtPPl~rl~p~~~~~vRI   69 (124)
T d2j2za1           2 VSLDRT-RAVFDGS---EKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRL   69 (124)
T ss_dssp             EEESCS-EEEEETT---SSEEEEEEEECCSSSCEEEEEEEECTTSCEESSSSEEEECSEEEECTTCEEEEEE
T ss_pred             eEeCCc-EEEEeCC---CCEEEEEEEeCCCCccEEEEEEEecCCCCccccCCeEECCCeEEECCCCcceEEE
Confidence            566774 7777632   34579999998875 44333222  122     2299999999999999888765