Citrus Sinensis ID: 032415

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDPVAPGVEFGRGGFAGARRRF
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHccccccccccccEEEEEEcccccccccHHHccHHHHHHHHHHccccccEEEEccHHHHHHHHccccccccccccccEEcHHHHHHHHHHccccccccEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEccHHHHHHHHHHHHHHHHHHccccccccHHHHHEEEcccHHHHHHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHccccccccccccEEEccHHHHHHHHHccccccccEEEEccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgrvrtktvkKSSRQVIERYYSRMTLDFHTNKKILEEVAiipskrlrnKIAGFSTHLMKRIQkgpvrgislkLQEEERErrmdfvpdesaiktdqieVDKETLDMLEALgmneipglvrvdpvapgvefgrggfagARRRF
Flexible Loop (DISEMBL)
mgrvrtktvkkssrqvIERYysrmtldfhtnkKILEevaiipskrlrNKIAGFSTHlmkriqkgpvrgislklqeeererrmdfvpdesaiktdqievdKETLDMLEALGMNEIPglvrvdpvapgvefgrggfagarrrf
Low Complexity Region (SEG)
MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDPVAPGVEfgrggfagarrrf
Disordered region (IsUnstruct)
***************VIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPV**********************************ETLDMLEALGMNEIPGLVRVDPVAPGVEFGR**********
Disordered Region (DISOPRED)
*GRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI***********************VPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV*********************
Disordered Region (DISEMBL)
**************QVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDPVAPGVEFGRGGFAGARRRF
Disordered Region (DISPRO)
**RVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDP*******************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDPVAPGVEFGRGGFAGARRRF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	141	2.2.26 [Sep-21-2011]
P49215	144	40S ribosomal protein S17	N/A	no	0.843	0.826	0.932	8e-60
Q9LZ17	141	40S ribosomal protein S17	yes	no	0.936	0.936	0.844	8e-60
P49205	141	40S ribosomal protein S17	yes	no	0.936	0.936	0.844	9e-59
Q9SJ36	140	40S ribosomal protein S17	yes	no	0.921	0.928	0.842	1e-58
Q9SQZ1	140	40S ribosomal protein S17	no	no	0.921	0.928	0.835	1e-57
O42984	131	40S ribosomal protein S17	yes	no	0.914	0.984	0.648	2e-42
Q9P7J6	132	40S ribosomal protein S17	no	no	0.836	0.893	0.686	3e-42
Q962R2	133	40S ribosomal protein S17	N/A	no	0.936	0.992	0.594	2e-40
Q967G1	131	40S ribosomal protein S17	yes	no	0.822	0.885	0.649	3e-40
Q4MYY1	130	40S ribosomal protein S17	yes	no	0.822	0.892	0.649	3e-40

>sp|P49215|RS17_SOLLC 40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3

 Score =  228 bits (581), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 111/119 (93%), Positives = 117/119 (98%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVR 119
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKTD IEVDKETLDML ALGM+++PG+V+
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVK 119

Solanum lycopersicum (taxid: 4081)

>sp|Q9LZ17|RS174_ARATH 40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3

 Score =  228 bits (581), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 114/135 (84%), Positives = 124/135 (91%), Gaps = 3/135 (2%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKTD+I+VDKETL+ML +LGM++ PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP---VAPGVEFGRG 132
           +P   +AP   FG G
Sbjct: 121 EPQQAMAPIAAFGGG 135

Arabidopsis thaliana (taxid: 3702)

>sp|P49205|RS171_ARATH 40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=1 SV=3

 Score =  224 bits (572), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 114/135 (84%), Positives = 123/135 (91%), Gaps = 3/135 (2%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKTD+I+VDKETL+ML +LGM++  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 DP---VAPGVEFGRG 132
           DP   +AP   FG G
Sbjct: 121 DPQQAMAPIPAFGGG 135

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJ36|RS172_ARATH 40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3

 Score =  224 bits (571), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 112/133 (84%), Positives = 122/133 (91%), Gaps = 3/133 (2%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKTD+I+VDKETL+ML +LGM++  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 DP---VAPGVEFG 130
           +P   +AP   FG
Sbjct: 121 EPQQAMAPIAAFG 133

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SQZ1|RS173_ARATH 40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3

 Score =  221 bits (563), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 112/134 (83%), Positives = 123/134 (91%), Gaps = 4/134 (2%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D ++VDKETL+ML +LGM++I G+ +V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 D---PVAPGVEFGR 131
           +    +AP V FGR
Sbjct: 121 ETQQAMAPAV-FGR 133

Arabidopsis thaliana (taxid: 3702)

>sp|O42984|RS17A_SCHPO 40S ribosomal protein S17-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps17a PE=3 SV=1

 Score =  171 bits (432), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/131 (64%), Positives = 108/131 (82%), Gaps = 2/131 (1%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKR
Sbjct: 1   MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
           IQ+GPVRGIS KLQEEERER+  +VP+ S ++ D++ VD++T DML++LG ++IP  VRV
Sbjct: 61  IQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQIP--VRV 118

Query: 121 DPVAPGVEFGR 131
              AP   F R
Sbjct: 119 LAPAPQERFRR 129

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9P7J6|RS17B_SCHPO 40S ribosomal protein S17-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps17b PE=1 SV=1

 Score =  170 bits (430), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 81/118 (68%), Positives = 102/118 (86%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKR
Sbjct: 1   MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLV 118
           IQ+GPVRGIS KLQEEERER+  +VP+ S ++ D+I VD++T DML+ALG + IP +V
Sbjct: 61  IQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSIPTVV 118

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q962R2|RS17_SPOFR 40S ribosomal protein S17 OS=Spodoptera frugiperda GN=RpS17 PE=2 SV=3

 Score =  164 bits (415), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/138 (59%), Positives = 106/138 (76%), Gaps = 6/138 (4%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKK+++ +IE+YY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R
Sbjct: 1   MGRVRTKTVKKAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
           ++   VRGIS+KLQEEERERR ++VP+ SA++ D IEVD +T DML+ L  N I GL   
Sbjct: 61  LRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLT 120

Query: 121 DPVAPGVEFGRGGFAGAR 138
            P        +GG+ G R
Sbjct: 121 QPAT------QGGYGGRR 132

Spodoptera frugiperda (taxid: 7108)

>sp|Q967G1|RS17_THEAN 40S ribosomal protein S17 OS=Theileria annulata GN=RPS17 PE=2 SV=3

 Score =  163 bits (413), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 76/117 (64%), Positives = 101/117 (86%), Gaps = 1/117 (0%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+R
Sbjct: 1   MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGL 117
           IQKGPVRGISLKLQEEERERRMD++P++S ++   I+VD++T DML  L ++ +P L
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS-LPNL 116

Theileria annulata (taxid: 5874)

>sp|Q4MYY1|RS17_THEPA 40S ribosomal protein S17 OS=Theileria parva GN=RPS17 PE=3 SV=3

 Score =  163 bits (412), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 76/117 (64%), Positives = 101/117 (86%), Gaps = 1/117 (0%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+R
Sbjct: 1   MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGL 117
           IQKGPVRGISLKLQEEERERRMD++P++S ++   I+VD++T DML  L ++ +P L
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS-LPNL 116

Theileria parva (taxid: 5875)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
356534524	139	PREDICTED: 40S ribosomal protein S17-4-l	0.978	0.992	0.876	7e-62
449437440	139	PREDICTED: 40S ribosomal protein S17-lik	0.886	0.899	0.936	3e-61
356500621	140	PREDICTED: 40S ribosomal protein S17-4-l	0.879	0.885	0.935	5e-61
255578977	143	40S ribosomal protein S17, putative [Ric	0.879	0.867	0.927	3e-60
449446303	141	PREDICTED: 40S ribosomal protein S17-4-l	0.985	0.985	0.846	4e-60
388497478	144	unknown [Lotus japonicus]	0.879	0.861	0.935	4e-60
255578615	144	40S ribosomal protein S17, putative [Ric	0.879	0.861	0.927	5e-60
255571941	144	40S ribosomal protein S17, putative [Ric	0.879	0.861	0.927	8e-60
313586437	145	40S ribosomal protein S17C [Hevea brasil	0.943	0.917	0.882	1e-59
313586441	145	40S ribosomal protein S17E [Hevea brasil	0.943	0.917	0.875	3e-59

>gi|356534524|ref|XP_003535803.1| PREDICTED: 40S ribosomal protein S17-4-like [Glycine max]

 Score =  241 bits (615), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 121/138 (87%), Positives = 127/138 (92%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAI+TDQIEVDKETLDML ALGM+E+PG+V+V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIRTDQIEVDKETLDMLAALGMSEVPGVVQV 120

Query: 121 DPVAPGVEFGRGGFAGAR 138
           DPVA     G G  AG R
Sbjct: 121 DPVAVQAPLGFGRGAGRR 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437440|ref|XP_004136500.1| PREDICTED: 40S ribosomal protein S17-like [Cucumis sativus] gi|449515869|ref|XP_004164970.1| PREDICTED: 40S ribosomal protein S17-like [Cucumis sativus]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 117/125 (93%), Positives = 121/125 (96%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMT+DFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTIDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKT+QIEVDKETLDML ALGMN+IPGLV+V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPVAP 125
           DP  P
Sbjct: 121 DPTVP 125

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500621|ref|XP_003519130.1| PREDICTED: 40S ribosomal protein S17-4-like [Glycine max]

 Score =  238 bits (607), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 116/124 (93%), Positives = 122/124 (98%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAI+TDQIEVDKETLDML ALGM+E+PG+V+V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIRTDQIEVDKETLDMLAALGMSEVPGIVQV 120

Query: 121 DPVA 124
           DPVA
Sbjct: 121 DPVA 124

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578977|ref|XP_002530341.1| 40S ribosomal protein S17, putative [Ricinus communis] gi|223530145|gb|EEF32057.1| 40S ribosomal protein S17, putative [Ricinus communis]

 Score =  236 bits (602), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 115/124 (92%), Positives = 122/124 (98%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQV+ERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVVERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
           IQKGPVRGISLKLQEEERERRMDFVP+ SAIKTDQIEVDKET+DML ALGM++IPG+V+V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEVSAIKTDQIEVDKETIDMLSALGMSDIPGIVQV 120

Query: 121 DPVA 124
           DPVA
Sbjct: 121 DPVA 124

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446303|ref|XP_004140911.1| PREDICTED: 40S ribosomal protein S17-4-like isoform 1 [Cucumis sativus] gi|449446305|ref|XP_004140912.1| PREDICTED: 40S ribosomal protein S17-4-like isoform 2 [Cucumis sativus] gi|449494136|ref|XP_004159460.1| PREDICTED: 40S ribosomal protein S17-4-like isoform 1 [Cucumis sativus] gi|449494139|ref|XP_004159461.1| PREDICTED: 40S ribosomal protein S17-4-like isoform 2 [Cucumis sativus]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 121/143 (84%), Positives = 129/143 (90%), Gaps = 4/143 (2%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D+I+VDKETLDML A GM++IPGLV V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 DPVA--PGVEFGRGGFAGARRRF 141
           +P A  P   FGRG  AG  RR+
Sbjct: 121 EPQAMIPPQAFGRG--AGGPRRY 141

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497478|gb|AFK36805.1| unknown [Lotus japonicus]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 116/124 (93%), Positives = 120/124 (96%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVA+IPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKTD I VDKETL+ML ALGM EIPG+V+V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDHIAVDKETLEMLAALGMAEIPGVVQV 120

Query: 121 DPVA 124
           DPVA
Sbjct: 121 DPVA 124

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578615|ref|XP_002530169.1| 40S ribosomal protein S17, putative [Ricinus communis] gi|223530330|gb|EEF32224.1| 40S ribosomal protein S17, putative [Ricinus communis]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 115/124 (92%), Positives = 121/124 (97%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
           IQKGPVRGISLKLQEEERERRMDFVP+ SAIKTDQIEVDKET+DML ALGM ++PGLV+V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEVSAIKTDQIEVDKETIDMLSALGMADMPGLVQV 120

Query: 121 DPVA 124
           DPVA
Sbjct: 121 DPVA 124

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571941|ref|XP_002526912.1| 40S ribosomal protein S17, putative [Ricinus communis] gi|223533731|gb|EEF35465.1| 40S ribosomal protein S17, putative [Ricinus communis]

 Score =  234 bits (597), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 115/124 (92%), Positives = 121/124 (97%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
           IQKGPVRGISLKLQEEERERRMDFVP+ SAIKTDQIEVDKET+DML ALGM ++PGLV+V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEVSAIKTDQIEVDKETIDMLAALGMGDMPGLVQV 120

Query: 121 DPVA 124
           DPVA
Sbjct: 121 DPVA 124

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586437|gb|ADR71229.1| 40S ribosomal protein S17C [Hevea brasiliensis]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 120/136 (88%), Positives = 126/136 (92%), Gaps = 3/136 (2%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
           IQKG VRGISLKLQEEERERRMDFVP+ SAIKT+QIEVDKET+DML ALGM +IPG+V+V
Sbjct: 61  IQKGSVRGISLKLQEEERERRMDFVPEVSAIKTEQIEVDKETIDMLAALGMGDIPGIVQV 120

Query: 121 DPVAPGVE---FGRGG 133
           DPVA  V    FGRGG
Sbjct: 121 DPVAVPVTQFGFGRGG 136

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586441|gb|ADR71231.1| 40S ribosomal protein S17E [Hevea brasiliensis]

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 119/136 (87%), Positives = 125/136 (91%), Gaps = 3/136 (2%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
           IQKG VRGISLKLQEEERERRMDFVP+ S IKT+QIEVDKET+DML ALGM +IPG+V+V
Sbjct: 61  IQKGSVRGISLKLQEEERERRMDFVPEVSVIKTEQIEVDKETIDMLAALGMGDIPGIVQV 120

Query: 121 DPVAPGVE---FGRGG 133
           DPVA  V    FGRGG
Sbjct: 121 DPVAVPVAQFGFGRGG 136

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
TAIR|locus:2175428	141	AT5G04800 "AT5G04800" [Arabido	0.865	0.865	0.893	1.1e-53
TAIR|locus:2058324	141	AT2G04390 "AT2G04390" [Arabido	0.865	0.865	0.893	4.9e-53
TAIR|locus:2051229	140	AT2G05220 "AT2G05220" [Arabido	0.865	0.871	0.885	8e-53
TAIR|locus:2075735	140	AT3G10610 "AT3G10610" [Arabido	0.900	0.907	0.838	4.4e-52
UNIPROTKB|Q8H7V0	144	OSJNBb0043C10.11 "40S ribosoma	0.843	0.826	0.831	3.6e-50
UNIPROTKB|Q7XEQ3	141	Os10g0411800 "Os10g0411800 pro	0.886	0.886	0.769	1.1e-48
UNIPROTKB|A8JGK1	139	RPS17 "Ribosomal protein S17"	0.865	0.877	0.713	1.7e-43
POMBASE|SPBC839.05c	131	rps1701 "40S ribosomal protein	0.872	0.938	0.664	1.4e-39
GENEDB_PFALCIPARUM|PFL2055w	137	PFL2055w "40S ribosomal protei	0.794	0.817	0.696	1.8e-39
UNIPROTKB|Q8I502	137	PFL2055w "40S ribosomal protei	0.794	0.817	0.696	1.8e-39

TAIR|locus:2175428 AT5G04800 "AT5G04800" [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 109/122 (89%), Positives = 118/122 (96%)

Query:     1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
             MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct:     1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
             IQKGPVRGISLKLQEEERERRMDFVPDESAIKTD+I+VDKETL+ML +LGM++ PG+  V
Sbjct:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query:   121 DP 122
             +P
Sbjct:   121 EP 122

GO:0000028 "ribosomal small subunit assembly" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2058324 AT2G04390 "AT2G04390" [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 109/122 (89%), Positives = 117/122 (95%)

Query:     1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
             MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct:     1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
             IQKGPVRGISLKLQEEERERRMDFVPDESAIKTD+I+VDKETL+ML +LGM++  G+  V
Sbjct:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query:   121 DP 122
             DP
Sbjct:   121 DP 122

GO:0000028 "ribosomal small subunit assembly" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2051229 AT2G05220 "AT2G05220" [Arabidopsis thaliana (taxid:3702)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 108/122 (88%), Positives = 117/122 (95%)

Query:     1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
             MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct:     1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
             IQKGPVRGISLKLQEEERERRMDFVPDESAIKTD+I+VDKETL+ML +LGM++  G+  V
Sbjct:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query:   121 DP 122
             +P
Sbjct:   121 EP 122

GO:0000028 "ribosomal small subunit assembly" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2075735 AT3G10610 "AT3G10610" [Arabidopsis thaliana (taxid:3702)]

 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 109/130 (83%), Positives = 120/130 (92%)

Query:     1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
             MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct:     1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
             IQKGPVRGISLKLQEEERERRMDFVPDESAIK D ++VDKETL+ML +LGM++I G+ +V
Sbjct:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query:   121 DP---VAPGV 127
             +    +AP V
Sbjct:   121 ETQQAMAPAV 130

GO:0000028 "ribosomal small subunit assembly" evidence=IBA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0006414 "translational elongation" evidence=IBA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

UNIPROTKB|Q8H7V0 OSJNBb0043C10.11 "40S ribosomal protein S17, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 99/119 (83%), Positives = 113/119 (94%)

Query:     1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
             MGRVRTKTVKK+SRQVIE+YYSRMTLDFHTNKK+LEEV+I+PSKRLRNK+AGFSTHLM+R
Sbjct:     1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRR 60

Query:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVR 119
             IQ+GPVRGISLKLQEEERERRMDFVPD SA++ D I VDKETLDML +LGM ++PG+VR
Sbjct:    61 IQRGPVRGISLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGVVR 119

GO:0000028 "ribosomal small subunit assembly" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

UNIPROTKB|Q7XEQ3 Os10g0411800 "Os10g0411800 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 97/126 (76%), Positives = 117/126 (92%)

Query:     1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
             MGRVRTKTVKK+SRQVIE+YYSRMTLDFHTNKK+LEEV+I+PSKRLRNK+AGF+THLM+R
Sbjct:     1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRR 60

Query:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
             IQ+GPVRGISLKLQEEERERRMDFVP++SA++ ++I VDKET++ML ALGM ++PG+ R 
Sbjct:    61 IQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQ 120

Query:   121 DPV-AP 125
               V AP
Sbjct:   121 QEVSAP 126

GO:0000028 "ribosomal small subunit assembly" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

UNIPROTKB|A8JGK1 RPS17 "Ribosomal protein S17" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 87/122 (71%), Positives = 107/122 (87%)

Query:     1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
             MGRVRTKTVKK+SR +IE+YY R+T+DF TNK+++EEVA+I +KRLRNKIAGF+THLMKR
Sbjct:     1 MGRVRTKTVKKASRVIIEKYYGRLTMDFDTNKRVVEEVALIATKRLRNKIAGFTTHLMKR 60

Query:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
             IQ+GPVRGISLKLQEEERERRMDFVP+ESAI T  IEVDK+T+DML+++ M  + G+   
Sbjct:    61 IQRGPVRGISLKLQEEERERRMDFVPEESAINTLSIEVDKDTMDMLKSINMGTLSGVQLA 120

Query:   121 DP 122
              P
Sbjct:   121 QP 122

GO:0000028 "ribosomal small subunit assembly" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

POMBASE|SPBC839.05c rps1701 "40S ribosomal protein S17 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 83/125 (66%), Positives = 106/125 (84%)

Query:     1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
             MGRVRTKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKR
Sbjct:     1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60

Query:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
             IQ+GPVRGIS KLQEEERER+  +VP+ S ++ D++ VD++T DML++LG ++IP  VRV
Sbjct:    61 IQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQIP--VRV 118

Query:   121 DPVAP 125
                AP
Sbjct:   119 LAPAP 123

GO:0002182 "cytoplasmic translational elongation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO

GO:0042254 "ribosome biogenesis" evidence=ISO

GENEDB_PFALCIPARUM|PFL2055w PFL2055w "40S ribosomal protein S17, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 78/112 (69%), Positives = 100/112 (89%)

Query:     1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
             MGRVRTKT+K+++RQ++E+YY+++TLDF  NKKI EEVAIIPSKR++NK+AGF THLMKR
Sbjct:     1 MGRVRTKTIKRAARQIVEKYYAKLTLDFQINKKITEEVAIIPSKRMKNKVAGFVTHLMKR 60

Query:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMN 112
             IQKGPVRGISLKLQEEERERR+DFVP++S I    I V+ +TL M+++LG+N
Sbjct:    61 IQKGPVRGISLKLQEEERERRLDFVPEKSQIDVSVIYVEPDTLRMIKSLGIN 112

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

UNIPROTKB|Q8I502 PFL2055w "40S ribosomal protein S17, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 78/112 (69%), Positives = 100/112 (89%)

Query:     1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
             MGRVRTKT+K+++RQ++E+YY+++TLDF  NKKI EEVAIIPSKR++NK+AGF THLMKR
Sbjct:     1 MGRVRTKTIKRAARQIVEKYYAKLTLDFQINKKITEEVAIIPSKRMKNKVAGFVTHLMKR 60

Query:    61 IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMN 112
             IQKGPVRGISLKLQEEERERR+DFVP++S I    I V+ +TL M+++LG+N
Sbjct:    61 IQKGPVRGISLKLQEEERERRLDFVPEKSQIDVSVIYVEPDTLRMIKSLGIN 112

GO:0005739 "mitochondrion" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P42520	RS17_DICDI	No assigned EC number	0.5901	0.8581	0.8962	yes	no
P49205	RS171_ARATH	No assigned EC number	0.8444	0.9361	0.9361	yes	no
Q90YQ6	RS17_ICTPU	No assigned EC number	0.6124	0.9078	0.9552	N/A	no
Q967G1	RS17_THEAN	No assigned EC number	0.6495	0.8226	0.8854	yes	no
P08636	RS17_CHICK	No assigned EC number	0.6124	0.9078	0.9481	yes	no
P0CW22	RS17L_HUMAN	No assigned EC number	0.6124	0.9078	0.9481	yes	no
Q962R2	RS17_SPOFR	No assigned EC number	0.5942	0.9361	0.9924	N/A	no
A5PK63	RS17_BOVIN	No assigned EC number	0.6124	0.9078	0.9481	yes	no
P04644	RS17_RAT	No assigned EC number	0.6124	0.9078	0.9481	yes	no
Q9SQZ1	RS173_ARATH	No assigned EC number	0.8358	0.9219	0.9285	no	no
P17704	RS17_DROME	No assigned EC number	0.6106	0.9148	0.9847	yes	no
O01692	RS17_CAEEL	No assigned EC number	0.6434	0.7943	0.8615	yes	no
Q9SJ36	RS172_ARATH	No assigned EC number	0.8421	0.9219	0.9285	yes	no
Q6QAP7	RS17_PIG	No assigned EC number	0.6124	0.9078	0.9481	yes	no
P08708	RS17_HUMAN	No assigned EC number	0.6124	0.9078	0.9481	yes	no
Q9U9L1	RS17_ANOGA	No assigned EC number	0.6456	0.8794	0.9465	yes	no
P63276	RS17_MOUSE	No assigned EC number	0.6124	0.9078	0.9481	yes	no
P63274	RS17_CRIGR	No assigned EC number	0.6124	0.9078	0.9481	yes	no
P63275	RS17_FELCA	No assigned EC number	0.6124	0.9078	0.9481	N/A	no
Q4MYY1	RS17_THEPA	No assigned EC number	0.6495	0.8226	0.8923	yes	no
P49215	RS17_SOLLC	No assigned EC number	0.9327	0.8439	0.8263	N/A	no
P63273	RS17_CANFA	No assigned EC number	0.6124	0.9078	0.9481	yes	no
O42984	RS17A_SCHPO	No assigned EC number	0.6488	0.9148	0.9847	yes	no
P14127	RS17B_YEAST	No assigned EC number	0.6173	0.7872	0.8161	yes	no
Q7ZUB2	RS17_COTJA	No assigned EC number	0.6124	0.9078	0.9481	N/A	no
P27770	RS17_NEUCR	No assigned EC number	0.5958	0.9787	0.9452	N/A	no
Q9LZ17	RS174_ARATH	No assigned EC number	0.8444	0.9361	0.9361	yes	no
P02407	RS17A_YEAST	No assigned EC number	0.6173	0.7872	0.8161	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00013816001	SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_100, whole genome shotgun sequence); (144 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00031140001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (234 aa)				•	•	•	•		0.960
	GSVIVG00025575001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (307 aa)				•	•	•	•		0.941
	GSVIVG00023139001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (136 aa)				•	•	•	•		0.940
	GSVIVG00016417001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (83 aa)				•	•	•	•		0.921
	GSVIVG00017233001	RecName- Full=40S ribosomal protein S12; (140 aa)				•	•	•	•		0.909
	GSVIVG00034206001	SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (129 aa)				•	•	•	•		0.908
	GSVIVG00019030001	SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (103 aa)				•		•	•		0.906
	GSVIVG00016251001	SubName- Full=Putative uncharacterized protein (Chromosome chr17 scaffold_12, whole genome shot [...] (143 aa)			•	•	•	•	•		0.897
	GSVIVG00030059001	SubName- Full=Putative uncharacterized protein (Chromosome chr1 scaffold_5, whole genome shotgu [...] (146 aa)			•	•	•	•	•		0.894
	GSVIVG00024035001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (246 aa)				•	•	•	•		0.882

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	141
PTZ00154	134	PTZ00154, PTZ00154, 40S ribosomal protein S17; Pro	2e-71
pfam00833	122	pfam00833, Ribosomal_S17e, Ribosomal S17	6e-70
COG1383	74	COG1383, RPS17A, Ribosomal protein S17E [Translati	6e-28
PRK01151	58	PRK01151, rps17E, 30S ribosomal protein S17e; Vali	1e-17

>gnl|CDD|240295 PTZ00154, PTZ00154, 40S ribosomal protein S17; Provisional

 Score =  209 bits (535), Expect = 2e-71
 Identities = 87/125 (69%), Positives = 106/125 (84%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVK+++RQ++E+YYS++TLDFHTNKKI+EEVAIIPSKRLRNKIAGF THLMKR
Sbjct: 1   MGRVRTKTVKRAARQIVEKYYSKLTLDFHTNKKIVEEVAIIPSKRLRNKIAGFVTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
           IQKGPVRGISLKLQEEERERRMD+VP++S +  D I VD++T DML++LG+     +   
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDYVPEKSEVDIDNITVDQDTKDMLKSLGLGVPRPVKVP 120

Query: 121 DPVAP 125
           D    
Sbjct: 121 DVARK 125

Length = 134

>gnl|CDD|216141 pfam00833, Ribosomal_S17e, Ribosomal S17

 Score =  206 bits (525), Expect = 6e-70
 Identities = 82/122 (67%), Positives = 102/122 (83%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVK+++R +IE+YYS++TLDF TNK+I +EVAIIPSKRLRNKIAG+ THLMKR
Sbjct: 1   MGRVRTKTVKRAARVIIEKYYSKLTLDFQTNKRICDEVAIIPSKRLRNKIAGYVTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
           IQ+GPVRGISLKLQEEERERR ++VP+ S +    IEVD +T +ML++LG  EIP +  V
Sbjct: 61  IQRGPVRGISLKLQEEERERRDNYVPEVSELDVPLIEVDPDTKEMLKSLGFGEIPNVKVV 120

Query: 121 DP 122
             
Sbjct: 121 QE 122

Length = 122

>gnl|CDD|224301 COG1383, RPS17A, Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]

 Score = 97.8 bits (244), Expect = 6e-28
 Identities = 41/74 (55%), Positives = 59/74 (79%)

Query: 1  MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
          MGR+R K VK+++R++IE+Y  + T DF TNK+++EE+A I SK+LRN+IAG+ T L+KR
Sbjct: 1  MGRIRPKFVKRTARELIEKYPDKFTDDFETNKRLVEELANIQSKKLRNRIAGYITRLVKR 60

Query: 61 IQKGPVRGISLKLQ 74
          I++GP R I  KLQ
Sbjct: 61 IKEGPKREIEEKLQ 74

Length = 74

>gnl|CDD|179234 PRK01151, rps17E, 30S ribosomal protein S17e; Validated

 Score = 71.1 bits (175), Expect = 1e-17
 Identities = 25/58 (43%), Positives = 42/58 (72%)

Query: 2  GRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMK 59
          G +R K +K+++ +++E+Y    T DF TNKK++EE+  I SK++RN+IAG+ T  +K
Sbjct: 1  GNIRPKYIKRTAEELLEKYPDLFTTDFETNKKLVEELTNIESKKVRNRIAGYITRKVK 58

Length = 58

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
KOG0187	134	consensus 40S ribosomal protein S17 [Translation,	100.0
PTZ00154	134	40S ribosomal protein S17; Provisional	100.0
PF00833	121	Ribosomal_S17e: Ribosomal S17; InterPro: IPR001210	100.0
COG1383	74	RPS17A Ribosomal protein S17E [Translation, riboso	100.0
PRK01151	58	rps17E 30S ribosomal protein S17e; Validated	99.98

>KOG0187 consensus 40S ribosomal protein S17 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.9e-75  Score=445.51  Aligned_cols=126  Identities=66%  Similarity=1.018  Sum_probs=125.0

Q ss_pred             CCcccchhHHHHHHHHHHHhhcccCcchhHhHHHHHHhhccCcccccccccchhhhhhhhhhcCccccceecccHHHHhh
Q 032415            1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERER   80 (141)
Q Consensus         1 MGrVRtk~VKr~ar~liEkY~~~~t~DFe~NK~vv~eva~I~SKrlRNkIAGYVThLmKriqrgpvrgisiklqEEerer   80 (141)
                      ||+|||||||++|++|+||||.++++||||||++|+|+|+|+||+|||+||||+||||||||+|||||||||||||||||
T Consensus         1 MGrVrtktvKkaar~iiEkYy~rl~~dF~tNk~vceEvAII~SKkLrNkIAGyvtHLmkrIqkGpvRGISiKLQEEEREr   80 (134)
T KOG0187|consen    1 MGRVRTKTVKKAARVIIEKYYTRLTLDFHTNKRVCEEVAIIPSKKLRNKIAGYVTHLMKRIQKGPVRGISIKLQEEERER   80 (134)
T ss_pred             CCcchhHHHHHHHHHHHHHHhccccccccccchhehheeeecchhhhhHHHHHHHHHHHHHHcCCccceeEeecHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCcccccccceeechHHHHHHHHcCCCCCCCeeeeCCCCCC
Q 032415           81 RMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDPVAPG  126 (141)
Q Consensus        81 r~nyvpe~S~ld~~~i~VD~~T~eMlk~l~~~~~~~~~~~~~~~~~  126 (141)
                      |||||||+|+||+|+|+||+||+||||+|||++++|+++++|++++
T Consensus        81 rdnyVPevSaLd~d~ieVD~dT~eMlk~lg~~~~~~~~~~~~~~~~  126 (134)
T KOG0187|consen   81 RDNYVPEVSALDQDIIEVDPDTKEMLKLLGFGSLSGVQVTEPQVEM  126 (134)
T ss_pred             hcccCcchhhcchhheeeChhHHHHHHHcCCCCcCceeeeccchhh
Confidence            9999999999999999999999999999999999999999999886

>PTZ00154 40S ribosomal protein S17; Provisional

Probab=100.00  E-value=4.7e-69  Score=413.54  Aligned_cols=127  Identities=69%  Similarity=1.064  Sum_probs=123.2

Q ss_pred             CCcccchhHHHHHHHHHHHhhcccCcchhHhHHHHHHhhccCcccccccccchhhhhhhhhhcCccccceecccHHHHhh
Q 032415            1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERER   80 (141)
Q Consensus         1 MGrVRtk~VKr~ar~liEkY~~~~t~DFe~NK~vv~eva~I~SKrlRNkIAGYVThLmKriqrgpvrgisiklqEEerer   80 (141)
                      ||+|||++||++|++|+|+||++||+|||+||++|+|+|+|+||+|||+||||||||||+||+|||||||||||||||||
T Consensus         1 MG~VRtk~VKr~a~~LiEkY~~~ft~DFe~NKkvv~eva~I~SKrlRNrIAGYIThlmkri~~gpvrgis~klqeeerer   80 (134)
T PTZ00154          1 MGRVRTKTVKRAARQIVEKYYSKLTLDFHTNKKIVEEVAIIPSKRLRNKIAGFVTHLMKRIQKGPVRGISLKLQEEERER   80 (134)
T ss_pred             CCCcchHHHHHHHHHHHHHhHHHhcccHHHHHHHHHHHhcccchhhhhHHHHHHHHHHhhhccCCccccceehhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCcccccccceeechHHHHHHHHcCCCCCC-CeeeeCCCCCCCC
Q 032415           81 RMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIP-GLVRVDPVAPGVE  128 (141)
Q Consensus        81 r~nyvpe~S~ld~~~i~VD~~T~eMlk~l~~~~~~-~~~~~~~~~~~~~  128 (141)
                      |||||||+|+||++.|+||+||+|||++|||+ +| ++++++|+.....
T Consensus        81 r~~yvPe~s~~~~~~i~vd~~t~~ml~~~~~~-~~~~~~~~~~~~~~~~  128 (134)
T PTZ00154         81 RMDYVPEKSEVDIDNITVDQDTKDMLKSLGLG-VPRPVKVPDVARKKQK  128 (134)
T ss_pred             hhccCCcchhcccceeEECHHHHHHHHHcCCC-CCCCceeccccccccc
Confidence            99999999999999999999999999999997 88 8999999765443

>PF00833 Ribosomal_S17e: Ribosomal S17; InterPro: IPR001210 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=2.7e-69  Score=409.27  Aligned_cols=121  Identities=64%  Similarity=1.030  Sum_probs=111.6

Q ss_pred             CCcccchhHHHHHHHHHHHhhcccCcchhHhHHHHHHhhccCcccccccccchhhhhhhhhhcCccccceecccHHHHhh
Q 032415            1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERER   80 (141)
Q Consensus         1 MGrVRtk~VKr~ar~liEkY~~~~t~DFe~NK~vv~eva~I~SKrlRNkIAGYVThLmKriqrgpvrgisiklqEEerer   80 (141)
                      ||+|||++||++|++|+|+||++||+|||+||++|+|+|+|+||+|||+||||||||||+||+|||||||||||||||||
T Consensus         1 MG~Vrtk~IKr~a~~lieky~~~~t~DF~~NK~v~~eva~i~SKklRNkIAGYvThlmKriq~g~vrgis~klqEeErer   80 (121)
T PF00833_consen    1 MGRVRTKTIKRAARELIEKYYDRFTNDFETNKKVVEEVAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERER   80 (121)
T ss_dssp             ------HHHHHHHHHHHTTCTTTSSSSHHHHHHHHHHCSSSSSTTHHHHHHHHHHHHHHHHTSSSSTTCSSCCCCHHHHC
T ss_pred             CCCCcchHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHccccchhhHHHHHHHHHHHHHHHHhccccccchhhhHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCcccccccceeechHHHHHHHHcCCCCCCCeeeeC
Q 032415           81 RMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVD  121 (141)
Q Consensus        81 r~nyvpe~S~ld~~~i~VD~~T~eMlk~l~~~~~~~~~~~~  121 (141)
                      ||||||++|+||++.|+|||||+||||+|||+++||++|+|
T Consensus        81 r~n~vpe~s~~d~~~i~VD~~T~emlk~l~~~~~~~~~~~~  121 (121)
T PF00833_consen   81 RDNYVPEVSALDQEIIEVDPDTKEMLKSLGFGSLPNLQVTQ  121 (121)
T ss_dssp             CTSSSSSSSEEESCS-ECTHHHHHHHHHTTTTSSS-EEEE-
T ss_pred             hcccCCccccccCCcceeChhHHHHHHHcCCCCCCcceecC
Confidence            99999999999999999999999999999999999999986

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped in this family of ribosomal proteins, S17e. They include, vertebrate, Drosophila and Neurospora crassa (crp-3) S17's as well as yeast S17a (RP51A) and S17b (RP51B) and archaebacterial S17e [, , ].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1RQ6_A 2XZM_V 2XZN_V 3IZ6_Q 3IZB_Q 3O30_K 3O2Z_K 3U5G_R 3U5C_R.

>COG1383 RPS17A Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.3e-36  Score=211.87  Aligned_cols=74  Identities=55%  Similarity=0.877  Sum_probs=73.0

Q ss_pred             CCcccchhHHHHHHHHHHHhhcccCcchhHhHHHHHHhhccCcccccccccchhhhhhhhhhcCccccceeccc
Q 032415            1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQ   74 (141)
Q Consensus         1 MGrVRtk~VKr~ar~liEkY~~~~t~DFe~NK~vv~eva~I~SKrlRNkIAGYVThLmKriqrgpvrgisiklq   74 (141)
                      ||+|||++|||+|++|+|+||+.||+||++||++|+|++.|+||+|||+|||||||||++++.|++++|++|+|
T Consensus         1 MG~IR~~~vKR~a~el~ekY~~~ft~dFe~NK~~V~e~~~i~SK~lRN~IAGYiT~~~~~~~~~~~~e~~~k~~   74 (74)
T COG1383           1 MGRIRPKFVKRTARELIEKYPDKFTDDFETNKRLVEELANIQSKKLRNRIAGYITRLVKRIKEGPKREIEEKLQ   74 (74)
T ss_pred             CCCcchHHHHHHHHHHHHHhHHHhcccHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999876

>PRK01151 rps17E 30S ribosomal protein S17e; Validated

Probab=99.98  E-value=1.4e-33  Score=191.18  Aligned_cols=58  Identities=43%  Similarity=0.744  Sum_probs=57.2

Q ss_pred             CcccchhHHHHHHHHHHHhhcccCcchhHhHHHHHHhhccCcccccccccchhhhhhh
Q 032415            2 GRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMK   59 (141)
Q Consensus         2 GrVRtk~VKr~ar~liEkY~~~~t~DFe~NK~vv~eva~I~SKrlRNkIAGYVThLmK   59 (141)
                      |+|||++||++|++|+|+||++||+|||+||++|+|+|+|+||+|||+|||||||||+
T Consensus         1 G~Ir~k~IKr~a~~lieky~~~ft~DFe~NK~~v~e~a~i~SK~lRNrIAGYiT~~~~   58 (58)
T PRK01151          1 GNIRPKYIKRTAEELLEKYPDLFTTDFETNKKLVEELTNIESKKVRNRIAGYITRKVK   58 (58)
T ss_pred             CCcchHHHHHHHHHHHHHhHHHhcccHHHHHHHHHHHhcCccHhHHHHHhhhhhhccC
Confidence            8999999999999999999999999999999999999999999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	141
3iz6_Q	141	Localization Of The Small Subunit Ribosomal Protein		3e-53
2xzm_V	130	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-45
3izb_Q	136	Localization Of The Small Subunit Ribosomal Protein		2e-37
3zey_L	142	High-resolution Cryo-electron Microscopy Structure		2e-34
1rq6_A	62	Solution Structure Of Ribosomal Protein S17e From M		3e-09
3j20_S	67	Promiscuous Behavior Of Proteins In Archaeal Riboso		5e-08

>pdb|3IZ6|Q Chain Q, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 141

Iteration: 1
 Score =  203 bits (516), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 95/124 (76%), Positives = 116/124 (93%)
Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKK+SRQVIE+YYSRMTLDFHTNKK+LEEV+I+PSKRLRNK+AGF+THLM+R
Sbjct: 1   MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRR 60
Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
           IQ+GPVRGISLKLQEEERERRMDFVP++SA++ ++I VDKET++ML ALGM ++PG+ R 
Sbjct: 61  IQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQ 120
Query: 121 DPVA 124
             V+
Sbjct: 121 QEVS 124

>pdb|2XZM|V Chain V, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 130

Iteration: 1
 Score =  177 bits (448), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 83/124 (66%), Positives = 103/124 (83%)
Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVK++++ +IE YYS++T DFH NKKIL EVA +PSKRLRNKIAGF+THLMKR
Sbjct: 1   MGRVRTKTVKRAAKSLIEHYYSKLTNDFHFNKKILSEVAQVPSKRLRNKIAGFATHLMKR 60
Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
           IQKGPVRGISLK+QEEERERR+D+VP++S I  +++ +D ET +ML+ LG   IPGLV  
Sbjct: 61  IQKGPVRGISLKVQEEERERRLDYVPEKSIIDIEKVTIDNETKEMLKKLGYQNIPGLVSA 120
Query: 121 DPVA 124
              A
Sbjct: 121 SAPA 124

>pdb|3IZB|Q Chain Q, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 136

Iteration: 1
 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/115 (61%), Positives = 95/115 (82%), Gaps = 4/115 (3%)
Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVK++S+ +IERYY ++TLDF TNK++ +E+A I SKRLRNKIAG++THLMKR
Sbjct: 1   MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKR 60
Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQ----IEVDKETLDMLEALGM 111
           IQKGPVRGIS KLQEEERER+  +VP+ SA+   +    + VD +T D++++LG+
Sbjct: 61  IQKGPVRGISFKLQEEERERKDQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGL 115

>pdb|3ZEY|L Chain L, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 142

Iteration: 1
 Score =  140 bits (353), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 65/112 (58%), Positives = 93/112 (83%), Gaps = 3/112 (2%)
Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MG++RTKTVK++S+Q++E+Y+S++  DF+ NK+I+ +V I  SK+L+NKIAG++TH+MKR
Sbjct: 1   MGKIRTKTVKRASKQIVEKYFSKLNKDFYQNKRIVMDVTIARSKKLKNKIAGYATHIMKR 60
Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIK---TDQIEVDKETLDMLEAL 109
           + +GPVRGISLKLQEEERERRMD+VP+ S +     D I VDK+TL ML+ +
Sbjct: 61  LARGPVRGISLKLQEEERERRMDYVPEVSHVDQAIQDGIRVDKQTLAMLKRM 112

>pdb|1RQ6|A Chain A, Solution Structure Of Ribosomal Protein S17e From Methanobacterium Thermoautotrophicum, Northeast Structural Genomics Consortium Target Tt802 ONTARIO CENTER FOR Structural Proteomics Target Mth0803 Length = 62

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 43/60 (71%)
Query: 1  MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
          MG +RT  VK+ ++++IE +  + T DF TNKK++EE + + +K LRNKIAG+ T ++ +
Sbjct: 1  MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITRIISQ 60

>pdb|3J20|S Chain S, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 67

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 45/66 (68%)
Query: 1  MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
          MG++R   +K+ +R+++ +Y +  T DF  NKK ++E+  + SK++RN+IAG+ T L++ 
Sbjct: 1  MGKIRQGFIKRVARELVNKYPNEFTTDFEHNKKKVQELTNVTSKKIRNRIAGYVTKLVRM 60
Query: 61 IQKGPV 66
            +G +
Sbjct: 61 KMEGKI 66

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	141
3iz6_Q	141	40S ribosomal protein S17 (S17E); eukaryotic ribos	7e-56
2xzm_V	130	RPS17E; ribosome, translation; 3.93A {Tetrahymena	1e-54
3u5c_R	136	RP51A, 40S ribosomal protein S17-A; translation, r	8e-48
1rq6_A	62	30S ribosomal protein S17E; alpha protein, structu	2e-30

>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 141

 Score =  170 bits (432), Expect = 7e-56
 Identities = 99/139 (71%), Positives = 121/139 (87%), Gaps = 1/139 (0%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKK+SRQVIE+YYSRMTLDFHTNKK+LEEV+I+PSKRLRNK+AGF+THLM+R
Sbjct: 1   MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
           IQ+GPVRGISLKLQEEERERRMDFVP++SA++ ++I VDKET++ML ALGM ++PG+ R 
Sbjct: 61  IQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQ 120

Query: 121 DPVAPGVEFGRGGFAGARR 139
             V     + R  + G RR
Sbjct: 121 QEV-SAPTYSRPPYGGPRR 138

>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V Length = 130

 Score =  166 bits (422), Expect = 1e-54
 Identities = 83/126 (65%), Positives = 103/126 (81%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVK++++ +IE YYS++T DFH NKKIL EVA +PSKRLRNKIAGF+THLMKR
Sbjct: 1   MGRVRTKTVKRAAKSLIEHYYSKLTNDFHFNKKILSEVAQVPSKRLRNKIAGFATHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRV 120
           IQKGPVRGISLK+QEEERERR+D+VP++S I  +++ +D ET +ML+ LG   IPGLV  
Sbjct: 61  IQKGPVRGISLKVQEEERERRLDYVPEKSIIDIEKVTIDNETKEMLKKLGYQNIPGLVSA 120

Query: 121 DPVAPG 126
              A  
Sbjct: 121 SAPANK 126

>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R Length = 136

 Score =  149 bits (378), Expect = 8e-48
 Identities = 72/129 (55%), Positives = 98/129 (75%), Gaps = 4/129 (3%)

Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVK++S+ +IERYY ++TLDF TNK++ +E+A I SKRLRNKIAG++THLMKR
Sbjct: 1   MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDQ----IEVDKETLDMLEALGMNEIPG 116
           IQKGPVRGIS KLQEEERER+  +VP+ SA+   +    + VD +T D++++LG+     
Sbjct: 61  IQKGPVRGISFKLQEEERERKDQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGLKLPLS 120

Query: 117 LVRVDPVAP 125
           ++ V     
Sbjct: 121 VINVSAQRD 129

>1rq6_A 30S ribosomal protein S17E; alpha protein, structural genomics, protein structure initiative, PSI, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.15.1 Length = 62

 Score =  103 bits (259), Expect = 2e-30
 Identities = 26/62 (41%), Positives = 44/62 (70%)

Query: 1  MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
          MG +RT  VK+ ++++IE +  + T DF TNKK++EE + + +K LRNKIAG+ T ++ +
Sbjct: 1  MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITRIISQ 60

Query: 61 IQ 62
           +
Sbjct: 61 QK 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	141
3iz6_Q	141	40S ribosomal protein S17 (S17E); eukaryotic ribos	100.0
2xzm_V	130	RPS17E; ribosome, translation; 3.93A {Tetrahymena	100.0
3u5c_R	136	RP51A, 40S ribosomal protein S17-A; translation, r	100.0
3j20_S	67	30S ribosomal protein S17E; archaea, archaeal, KIN	100.0
1rq6_A	62	30S ribosomal protein S17E; alpha protein, structu	100.0

>3iz6_Q 40S ribosomal protein S17 (S17E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.3e-77  Score=461.65  Aligned_cols=139  Identities=71%  Similarity=1.079  Sum_probs=132.2

Q ss_pred             CCcccchhHHHHHHHHHHHhhcccCcchhHhHHHHHHhhccCcccccccccchhhhhhhhhhcCccccceecccHHHHhh
Q 032415            1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERER   80 (141)
Q Consensus         1 MGrVRtk~VKr~ar~liEkY~~~~t~DFe~NK~vv~eva~I~SKrlRNkIAGYVThLmKriqrgpvrgisiklqEEerer   80 (141)
                      ||+||||+||++|++|||+||++||+|||+||++|+|+|+||||+|||+||||||||||+||+|||||||||||||||||
T Consensus         1 MG~Vrtk~VKr~Ar~IiEkY~~~ft~DFetNK~vveeia~I~SKklRNkIAGYVThlmKriq~GpvrgisiklqEeERer   80 (141)
T 3iz6_Q            1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVRGISLKLQEEERER   80 (141)
T ss_dssp             CCCCCCSHHHHHHHHHHTTTCCCCSCCHHHHHHHHHHSSSCCCTTTHHHHHHHHHHHHHHHCSCCCCCSSCCSSCCCCCS
T ss_pred             CCCcccHHHHHHHHHHHHHhhhhhcCcHHhhhHHHHHhccccchhhhhhhhheeeehhhccccCCccccceehhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCcccccccceeechHHHHHHHHcCCCCCCCeeeeCCCCCCCCCCCC-CCCCCccC
Q 032415           81 RMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDPVAPGVEFGRG-GFAGARRR  140 (141)
Q Consensus        81 r~nyvpe~S~ld~~~i~VD~~T~eMlk~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~  140 (141)
                      |||||||+|+||+|+|+|||||+||||+||||+|||++|+||++++ +|++. ...|+|||
T Consensus        81 rdnyvpe~S~ld~~~ieVD~dT~eMlk~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  140 (141)
T 3iz6_Q           81 RMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQEVSAP-TYSRPPYGGPRRDR  140 (141)
T ss_dssp             CSSSSCCCSEEEECCCCSSHHHHHHHHHTTTTCCSCEEEECCCSSC-CCCCTTTSCSCCSC
T ss_pred             HhccCCccccccccceeECHHHHHHHHHcCCCCCCCceecCCcccc-CcCCCccCCcccCc
Confidence            9999999999999999999999999999999999999999998764 56653 45566676

>2xzm_V RPS17E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_V

Probab=100.00  E-value=4e-74  Score=438.93  Aligned_cols=125  Identities=66%  Similarity=1.040  Sum_probs=120.8

Q ss_pred             CCcccchhHHHHHHHHHHHhhcccCcchhHhHHHHHHhhccCcccccccccchhhhhhhhhhcCccccceecccHHHHhh
Q 032415            1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERER   80 (141)
Q Consensus         1 MGrVRtk~VKr~ar~liEkY~~~~t~DFe~NK~vv~eva~I~SKrlRNkIAGYVThLmKriqrgpvrgisiklqEEerer   80 (141)
                      ||+|||++||++|++|||+||++||+|||+||++|+|+|+|+||+|||+||||||||||++|+|||||||||||||||||
T Consensus         1 MG~Vrtk~VKr~a~~liEkY~~~ft~DFe~NK~vv~eia~I~SKklRNkIAGYVThlmkriq~gpvrgis~klqEeerer   80 (130)
T 2xzm_V            1 MGRVRTKTVKRAAKSLIEHYYSKLTNDFHFNKKILSEVAQVPSKRLRNKIAGFATHLMKRIQKGPVRGISLKVQEEERER   80 (130)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHSBCCSHHHHHHHHHHHHHHHHHTTTSCCTTCCCTTTTHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHhhhcCCHHHhhHHHHHHccCCChhheecccchhhhHhhhcccCcccccccchhHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCcccccccceeechHHHHHHHHcCCCCCCCeeeeCCCCC
Q 032415           81 RMDFVPDESAIKTDQIEVDKETLDMLEALGMNEIPGLVRVDPVAP  125 (141)
Q Consensus        81 r~nyvpe~S~ld~~~i~VD~~T~eMlk~l~~~~~~~~~~~~~~~~  125 (141)
                      |||||||+|+||+++|+|||||+||||+||||++||++|++|+++
T Consensus        81 rd~yvPe~S~ld~~~i~vD~~t~emlk~l~~~~~~~~~~~~~~~~  125 (130)
T 2xzm_V           81 RLDYVPEKSIIDIEKVTIDNETKEMLKKLGYQNIPGLVSASAPAN  125 (130)
T ss_dssp             TTSCCCSSCSSCSSSCCBCHHHHHHHHHHTCSSSSCCBCCCC---
T ss_pred             hhccCCcccccccceeEECHHHHHHHHHcCCCCCCCceecCCCCc
Confidence            999999999999999999999999999999999999999999765

>3u5c_R RP51A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_Q 3o30_K 3o2z_K 3u5g_R

Probab=100.00  E-value=1e-72  Score=433.66  Aligned_cols=123  Identities=59%  Similarity=0.934  Sum_probs=114.3

Q ss_pred             CCcccchhHHHHHHHHHHHhhcccCcchhHhHHHHHHhhccCcccccccccchhhhhhhhhhcCccccceecccHHHHhh
Q 032415            1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERER   80 (141)
Q Consensus         1 MGrVRtk~VKr~ar~liEkY~~~~t~DFe~NK~vv~eva~I~SKrlRNkIAGYVThLmKriqrgpvrgisiklqEEerer   80 (141)
                      ||+|||||||++|++|||+||++||+|||+||++|+|+|+||||+|||+||||||||||+||+|||||||||||||||||
T Consensus         1 MG~Vrtk~VKr~Ar~IiEkY~~~ft~DFetNK~vveeia~I~SKklRNkIAGYVThLmKriq~GpvrgisiklqEeERer   80 (136)
T 3u5c_R            1 MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKIAGYTTHLMKRIQKGPVRGISFKLQEEERER   80 (136)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCSSCCSCHHHHHHHHHHHEECSCHHHHHHHHHHHHHHHHHHTTSCBTTBCCSHHHHHHHT
T ss_pred             CCCccchHHHHHHHHHHHHhhhhhcCcHHhhhHHHHHhhcccchhheeehhhhhhhhhcccccCCcccceeehhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCccccccc----ceeechHHHHHHHHcCCCCCCCeeeeCCCC
Q 032415           81 RMDFVPDESAIKTD----QIEVDKETLDMLEALGMNEIPGLVRVDPVA  124 (141)
Q Consensus        81 r~nyvpe~S~ld~~----~i~VD~~T~eMlk~l~~~~~~~~~~~~~~~  124 (141)
                      |||||||+|+||++    +|+|||||+||||+|||+ |||++|+.|..
T Consensus        81 rdnyvpe~S~ld~~~~~~~ieVD~~T~~mlk~l~~~-~~~~~~~~~~~  127 (136)
T 3u5c_R           81 KDQYVPEVSALDLSRSNGVLNVDNQTSDLVKSLGLK-LPLSVINVSAQ  127 (136)
T ss_dssp             TCCCCSSCC-----CCSSSCCBCHHHHHHHHHHCCC-CCCCBCCCCC-
T ss_pred             hhccCCcchhhcccccCCceEEChHHHHHHHHcCCC-CCcceeccccc
Confidence            99999999999998    899999999999999998 99999988744

>3j20_S 30S ribosomal protein S17E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.3e-39  Score=224.82  Aligned_cols=66  Identities=35%  Similarity=0.691  Sum_probs=65.3

Q ss_pred             CCcccchhHHHHHHHHHHHhhcccCcchhHhHHHHHHhhccCcccccccccchhhhhhhhhhcCcc
Q 032415            1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPV   66 (141)
Q Consensus         1 MGrVRtk~VKr~ar~liEkY~~~~t~DFe~NK~vv~eva~I~SKrlRNkIAGYVThLmKriqrgpv   66 (141)
                      ||+|||++||++|++|+|+||++||+|||+||++|+|+|+||||+|||+||||||||||++|+||.
T Consensus         1 MG~vr~k~VKr~a~~liekY~~~~t~DF~~NK~vv~eia~i~SKklRNkIAGYvT~l~k~~~~g~~   66 (67)
T 3j20_S            1 MGKIRQGFIKRVARELVNKYPNEFTTDFEHNKKKVQELTNVTSKKIRNRIAGYVTKLVRMKMEGKI   66 (67)
T ss_dssp             CCCCCCHHHHHHHHHHHHHSGGGCCSCHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCcchHHHHHHHHHHHHHhhhhhcccHHHhhHHHHHHhcccchhhhHHHHHHHHHHHHHHhccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999985

>1rq6_A 30S ribosomal protein S17E; alpha protein, structural genomics, protein structure initiative, PSI, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.15.1

Probab=100.00  E-value=6.7e-37  Score=208.70  Aligned_cols=61  Identities=43%  Similarity=0.685  Sum_probs=60.2

Q ss_pred             CCcccchhHHHHHHHHHHHhhcccCcchhHhHHHHHHhhccCcccccccccchhhhhhhhh
Q 032415            1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRI   61 (141)
Q Consensus         1 MGrVRtk~VKr~ar~liEkY~~~~t~DFe~NK~vv~eva~I~SKrlRNkIAGYVThLmKri   61 (141)
                      ||+|||++||++|++|+|+||++||+|||+||++|+|+|+||||+|||+||||||||||+.
T Consensus         1 MG~vr~k~iK~~a~~liekY~~~~t~DF~~NK~~v~e~a~i~SK~lRNkIAGYvT~l~k~~   61 (62)
T 1rq6_A            1 MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITRIISQQ   61 (62)
T ss_dssp             CCCCCCHHHHHHHHHHHTTSCCCCCCCHHHHHHHHHTTCCCSSTTHHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHhHhHhcCCHHHhhHHHHHHcccccHhHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999999976

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	141
d1rq6a_	62	a.4.15.1 (A:) ribosomal protein S17e {Methanobacte	5e-32

>d1rq6a_ a.4.15.1 (A:) ribosomal protein S17e {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 62

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Rps17e-like
family: Rps17e-like
domain: ribosomal protein S17e
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score =  106 bits (266), Expect = 5e-32
 Identities = 26/62 (41%), Positives = 44/62 (70%)

Query: 1  MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
          MG +RT  VK+ ++++IE +  + T DF TNKK++EE + + +K LRNKIAG+ T ++ +
Sbjct: 1  MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITRIISQ 60

Query: 61 IQ 62
           +
Sbjct: 61 QK 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	141
d1rq6a_	62	ribosomal protein S17e {Methanobacterium thermoaut	100.0

>d1rq6a_ a.4.15.1 (A:) ribosomal protein S17e {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Rps17e-like
family: Rps17e-like
domain: ribosomal protein S17e
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=1.3e-36  Score=205.64  Aligned_cols=62  Identities=42%  Similarity=0.682  Sum_probs=60.7

Q ss_pred             CCcccchhHHHHHHHHHHHhhcccCcchhHhHHHHHHhhccCcccccccccchhhhhhhhhh
Q 032415            1 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQ   62 (141)
Q Consensus         1 MGrVRtk~VKr~ar~liEkY~~~~t~DFe~NK~vv~eva~I~SKrlRNkIAGYVThLmKriq   62 (141)
                      ||+|||++||++|++|+|+||++||+|||+||++|+|+|+||||+|||+||||||||||+.+
T Consensus         1 MG~Ir~k~iKr~a~~lieky~~~ft~DF~~NK~~v~e~a~i~SKklRN~IAGYvTrl~k~~k   62 (62)
T d1rq6a_           1 MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITRIISQQK   62 (62)
T ss_dssp             CCCCCCHHHHHHHHHHHTTSCCCCCCCHHHHHHHHHTTCCCSSTTHHHHHHHHHHHHHHHHC
T ss_pred             CCCcchhHHHHHHHHHHHHchhHhccCHHHHHHHHHHHhcCCchhHhHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999863