Citrus Sinensis ID: 032435

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MASITACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTVSVIEIIIWHGCCEWEKKIKESF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccccccccccccccccccccccccccccEEEEEEEcccccccccccHHHEEHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHEHHHHHHHEEEEEEEcccHHHHHHHHccc
Coil and Loop (DISEMBL)
masitaclpspllvqgrqklslfitlpklplsplnekQNCLAIVAKasgessesstsLTVFKSVQNvwdnssedrlglIGLGFAGIVALWASVNLitaidklpiipNALELIGILFSTVSVIEIIIWHGCCEWEKKIKESF
Flexible Loop (DISEMBL)
masitaclpspllvqGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKAsgessesstslTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTVSVIEIIIWHGCCEWEKKIKESF
Low Complexity Region (SEG)
MASITACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIvakasgessesstsltvfksVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTVSVIEIIIWHGCCEWEKKIKESF
Disordered region (IsUnstruct)
*****ACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVA*************TVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTVSVIEIIIWHGCCEWEK******
Disordered Region (DISOPRED)
**************************************************************SVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTVSVIEIIIWHGCCEWEKKI****
Disordered Region (DISEMBL)
MASITACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAK************TVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTVSVIEIIIWHGCCEWEKKIKESF
Disordered Region (DISPRO)
*ASITACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKAS******STSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTVSVIEIIIWHGCCEWEKKIKESF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASITACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTVSVIEIIIWHGCCEWEKKIKESF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	141	2.2.26 [Sep-21-2011]
Q8LCA1	174	Thylakoid membrane phosph	no	no	0.404	0.327	0.431	3e-09

>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, chloroplastic OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 60  VFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFS 117
           + K+ Q  W+   +D+  +  L FAG+VALW S  +I+AID+LP++P  LEL+GI ++
Sbjct: 86  IVKTAQEAWEKV-DDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYT 142

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
224070909	146	predicted protein [Populus trichocarpa]	0.815	0.787	0.630	4e-33
18403896	156	uncharacterized protein [Arabidopsis tha	0.829	0.75	0.614	1e-30
21554231	156	unknown [Arabidopsis thaliana]	0.829	0.75	0.606	1e-29
224054368	146	predicted protein [Populus trichocarpa]	0.815	0.787	0.655	1e-29
118488080	146	unknown [Populus trichocarpa]	0.822	0.794	0.627	9e-29
79319729	155	uncharacterized protein [Arabidopsis tha	0.822	0.748	0.606	9e-29
388497330	178	unknown [Lotus japonicus]	0.808	0.640	0.666	7e-27
297852972	158	hypothetical protein ARALYDRAFT_892226 [	0.822	0.734	0.576	1e-25
255549936	146	Thylakoid membrane phosphoprotein 14 kDa	0.815	0.787	0.621	2e-24
388496712	146	unknown [Medicago truncatula]	0.808	0.780	0.644	4e-23

>gi|224070909|ref|XP_002303292.1| predicted protein [Populus trichocarpa] gi|222840724|gb|EEE78271.1| predicted protein [Populus trichocarpa]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 75/119 (63%), Positives = 96/119 (80%), Gaps = 4/119 (3%)

Query: 1   MASITACLPSP-LLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLT 59
           MASITA LPSP LLV G++ LS   TL  LPLSP+ ++QNC+++V +A+GESSESS  L 
Sbjct: 1   MASITASLPSPPLLVHGKRTLS--STLQTLPLSPIKDRQNCVSVVVRATGESSESSAPLG 58

Query: 60  VFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFST 118
           + KSV+N+WD+S EDRL L+GLGFA +VA+W S  LI AIDKLP++P+ LELIGILFS+
Sbjct: 59  IVKSVKNIWDDS-EDRLALVGLGFAALVAIWTSAKLILAIDKLPVVPSVLELIGILFSS 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403896|ref|NP_564603.1| uncharacterized protein [Arabidopsis thaliana] gi|6850346|gb|AAF29409.1|AC022354_8 unknown protein [Arabidopsis thaliana] gi|15294156|gb|AAK95255.1|AF410269_1 At1g52220/F9I5_10 [Arabidopsis thaliana] gi|20453285|gb|AAM19881.1| At1g52220/F9I5_10 [Arabidopsis thaliana] gi|332194648|gb|AEE32769.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/127 (61%), Positives = 94/127 (74%), Gaps = 10/127 (7%)

Query: 1   MASITACLPSPLLVQGR-------QKLSLFITLPKLPLSPLNEKQN--CLAIVAKASGES 51
           MASI+A LPSPLL+  R       QKL   +T     LSPL+  +N   ++++ KASGES
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 52  SESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALEL 111
           S+SST L V  ++QNVWD S EDRLGLIGLGFAGIVALWAS+NLITAIDKLP+I +  EL
Sbjct: 61  SDSSTDLDVVSTIQNVWDKS-EDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFEL 119

Query: 112 IGILFST 118
           +GILFST
Sbjct: 120 VGILFST 126

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554231|gb|AAM63306.1| unknown [Arabidopsis thaliana]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/127 (60%), Positives = 93/127 (73%), Gaps = 10/127 (7%)

Query: 1   MASITACLPSPLLVQGR-------QKLSLFITLPKLPLSPLNEKQN--CLAIVAKASGES 51
           MASI+A LPSPLL+  R       QKL   +T     LSPL+  +N   ++++ KASGES
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 52  SESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALEL 111
           S+SST L V  ++QNVWD S EDRLGLIGLGFAGIVALWAS+NLITAIDKL +I +  EL
Sbjct: 61  SDSSTDLDVVSTIQNVWDKS-EDRLGLIGLGFAGIVALWASLNLITAIDKLXVISSGFEL 119

Query: 112 IGILFST 118
           +GILFST
Sbjct: 120 VGILFST 126

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054368|ref|XP_002298225.1| predicted protein [Populus trichocarpa] gi|222845483|gb|EEE83030.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/119 (65%), Positives = 100/119 (84%), Gaps = 4/119 (3%)

Query: 1   MASITACLPSP-LLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLT 59
           MASI A LPSP LLV G++    F TL KLPLS + E+QNC+A+V KA+GESSESSTSL+
Sbjct: 1   MASIYANLPSPPLLVHGKR--IPFRTLQKLPLSTIKERQNCVAVVVKATGESSESSTSLS 58

Query: 60  VFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFST 118
           + KSVQN+WD+ SEDRL L+GLGFA +VA+WAS N+ITA+DKLP++P+ALE +GIL+S+
Sbjct: 59  IVKSVQNIWDD-SEDRLPLVGLGFAALVAVWASANVITAVDKLPVVPSALEFVGILYSS 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488080|gb|ABK95860.1| unknown [Populus trichocarpa]

 Score =  131 bits (330), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 74/118 (62%), Positives = 98/118 (83%), Gaps = 2/118 (1%)

Query: 1   MASITACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLTV 60
           MASI A LPSP L+   +++  F TL KLPLS + E+QNC+A+  KA+GESSESSTSL++
Sbjct: 1   MASIYANLPSPPLLVHSKRIP-FRTLQKLPLSTIKERQNCVAVAVKATGESSESSTSLSI 59

Query: 61  FKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFST 118
            KSVQN+WD+S EDRL L+GLGFA +VA+WAS N+ITA+DKLP++P+ALE +GIL+S+
Sbjct: 60  VKSVQNIWDDS-EDRLPLVGLGFAALVAVWASANVITAVDKLPVVPSALEFVGILYSS 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79319729|ref|NP_001031173.1| uncharacterized protein [Arabidopsis thaliana] gi|332194649|gb|AEE32770.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  131 bits (330), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 77/127 (60%), Positives = 93/127 (73%), Gaps = 11/127 (8%)

Query: 1   MASITACLPSPLLVQGR-------QKLSLFITLPKLPLSPLNEKQN--CLAIVAKASGES 51
           MASI+A LPSPLL+  R       QKL   +T     LSPL+  +N   ++++ KASGES
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query: 52  SESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALEL 111
           S+SST L V  ++QN WD S EDRLGLIGLGFAGIVALWAS+NLITAIDKLP+I +  EL
Sbjct: 61  SDSSTDLDVVSTIQN-WDKS-EDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFEL 118

Query: 112 IGILFST 118
           +GILFST
Sbjct: 119 VGILFST 125

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497330|gb|AFK36731.1| unknown [Lotus japonicus]

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 78/117 (66%), Positives = 90/117 (76%), Gaps = 3/117 (2%)

Query: 1   MASITACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLTV 60
           MASI A L  PLL+ GR+  S     P  P+S L  ++N +A+V KASGESSESSTSLTV
Sbjct: 34  MASIAASLQPPLLLHGRK--SHTGNFPSFPVSLLPGRRNLIALVVKASGESSESSTSLTV 91

Query: 61  FKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFS 117
            +SVQNVWD   EDRLGLIG GFAGIVALWAS NLITA+D+LP++P  LELIGILFS
Sbjct: 92  LQSVQNVWDKP-EDRLGLIGFGFAGIVALWASANLITAVDQLPVLPTVLELIGILFS 147

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852972|ref|XP_002894367.1| hypothetical protein ARALYDRAFT_892226 [Arabidopsis lyrata subsp. lyrata] gi|297340209|gb|EFH70626.1| hypothetical protein ARALYDRAFT_892226 [Arabidopsis lyrata subsp. lyrata]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/130 (57%), Positives = 89/130 (68%), Gaps = 14/130 (10%)

Query: 1   MASITACLPSPLLVQGR-------QKLSLFITLPKLPLSPL--NEK---QNCLAIVAKAS 48
           MASI+A LPSPLL+  R       QKLS  +T     +  +  N +   ++ L ++ KAS
Sbjct: 1   MASISATLPSPLLLTQRKSNLTSIQKLSFSLTRGTNDIFSVFSNSRFHLKSSLTLMVKAS 60

Query: 49  GESSESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNA 108
            ESSESST L V  S+QNVWD S EDRLGLIGL FA IVALWAS+NLITAIDKLP+I   
Sbjct: 61  -ESSESSTDLNVVTSIQNVWDKS-EDRLGLIGLSFAAIVALWASLNLITAIDKLPVISTG 118

Query: 109 LELIGILFST 118
            EL+GILFST
Sbjct: 119 FELVGILFST 128

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549936|ref|XP_002516019.1| Thylakoid membrane phosphoprotein 14 kDa, chloroplast precursor, putative [Ricinus communis] gi|223544924|gb|EEF46439.1| Thylakoid membrane phosphoprotein 14 kDa, chloroplast precursor, putative [Ricinus communis]

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/119 (62%), Positives = 93/119 (78%), Gaps = 4/119 (3%)

Query: 1   MASITACLPSP-LLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLT 59
           MASI A LP+P LLV  R   +LF T  K P+ PL E QN +A+V KA+GESSESS+SL+
Sbjct: 1   MASIVANLPAPALLVPSRT--TLFRTPQKGPVFPLKETQNRVAVVMKAAGESSESSSSLS 58

Query: 60  VFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFST 118
           + KSV+NVWD SSEDR  + GLGFA IV +WAS NL++A+DKLP+IP+ LELIGIL+S+
Sbjct: 59  IVKSVKNVWD-SSEDRWAIGGLGFAAIVGVWASANLVSAVDKLPLIPSVLELIGILYSS 116

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496712|gb|AFK36422.1| unknown [Medicago truncatula]

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/118 (64%), Positives = 85/118 (72%), Gaps = 4/118 (3%)

Query: 1   MASITACLPSPLLVQGRQKL-SLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLT 59
           MASI A LP PLL+ GR      F       L P   +++ +  V KASGESSESSTSLT
Sbjct: 1   MASIIASLPPPLLLHGRNSFPGNFQNFSVSSLPP--GRRSNVPFVVKASGESSESSTSLT 58

Query: 60  VFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFS 117
           VFKSVQNVWD   EDRLGL GLGFA +VALWAS NLI AIDKLP++P +LELIGILFS
Sbjct: 59  VFKSVQNVWDKP-EDRLGLFGLGFAAVVALWASTNLIAAIDKLPVVPISLELIGILFS 115

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
TAIR|locus:2037435	156	AT1G52220 "AT1G52220" [Arabido	0.829	0.75	0.519	4.2e-24
TAIR|locus:2044335	174	PSI-P "photosystem I P subunit	0.347	0.281	0.48	2.9e-09

TAIR|locus:2037435 AT1G52220 "AT1G52220" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 66/127 (51%), Positives = 79/127 (62%)

Query:     1 MASITACLPSPLLVQGR-------QKLSLFITLPKLPLSPLNEKQN--CLAIXXXXXXXX 51
             MASI+A LPSPLL+  R       QKL   +T     LSPL+  +N   +++        
Sbjct:     1 MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query:    52 XXXXXXXXXXXXVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALEL 111
                         +QNVWD S EDRLGLIGLGFAGIVALWAS+NLITAIDKLP+I +  EL
Sbjct:    61 SDSSTDLDVVSTIQNVWDKS-EDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFEL 119

Query:   112 IGILFST 118
             +GILFST
Sbjct:   120 VGILFST 126

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2044335 PSI-P "photosystem I P subunit" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 24/50 (48%), Positives = 35/50 (70%)

Query:    65 QNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGI 114
             Q  W+   +D+  +  L FAG+VALW S  +I+AID+LP++P  LEL+GI
Sbjct:    91 QEAWEKV-DDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGI 139


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.140   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      141       121   0.00091  102 3  11 22  0.47    30
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  135 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.33u 0.09s 11.42t   Elapsed:  00:00:01
  Total cpu time:  11.33u 0.09s 11.42t   Elapsed:  00:00:01
  Start:  Sat May 11 05:07:28 2013   End:  Sat May 11 05:07:29 2013

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0003677 "DNA binding" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=ISS;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=IDA

GO:0030093 "chloroplast photosystem I" evidence=IMP;IDA

GO:0009295 "nucleoid" evidence=IDA

GO:0009508 "plastid chromosome" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	141
PLN02777	167	PLN02777, PLN02777, photosystem I P subunit (PSI-P	1e-14
pfam14159	90	pfam14159, DUF4308, Domain of unknown function (DU	4e-12

>gnl|CDD|178376 PLN02777, PLN02777, photosystem I P subunit (PSI-P)

 Score = 66.6 bits (162), Expect = 1e-14
 Identities = 40/108 (37%), Positives = 60/108 (55%), Gaps = 15/108 (13%)

Query: 24  ITLPKLPLSPLNEKQN-------CLAI----VAKASGES---SESSTSLTVFKSVQNVWD 69
           ++LP LP  P+            C  I    V  A+GE+    E++    + K+VQ  WD
Sbjct: 29  VSLPTLPPPPVQSHNRPAKATAYCRKIARNVVTMATGEAPAEVETTELPEIVKTVQEAWD 88

Query: 70  NSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFS 117
              ED+  +  L FAG+VALW S  +I+AID+LP++P  LEL+GI ++
Sbjct: 89  KV-EDKYAVSSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYT 135

Length = 167

>gnl|CDD|222574 pfam14159, DUF4308, Domain of unknown function (DUF4308)

 Score = 58.0 bits (141), Expect = 4e-12
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 61  FKSVQNVWDNSSEDRLGLIGLGFAGI----VALWASVNLITAIDKLPIIPNALELIGILF 116
            K + N W    ED+     LG   I    VALW S  ++ AID +P++P  LEL+G+ +
Sbjct: 1   LKKLPNYWG-KFEDKYKRPLLGVGAIIAVIVALWLSAAVLDAIDSIPLLPGLLELVGLGY 59

Query: 117 ST 118
           S 
Sbjct: 60  SG 61

This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is approximately 90 amino acids in length. The domain is found in several amino-acyl tRNA synthetase enzymes as well as in isolation in single domain proteins. Length = 90

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
PLN02777	167	photosystem I P subunit (PSI-P)	100.0
PF14159	90	CAAD: CAAD domains of cyanobacterial aminoacyl-tRN	99.96
PF14159	90	CAAD: CAAD domains of cyanobacterial aminoacyl-tRN	88.47

>PLN02777 photosystem I P subunit (PSI-P)

Probab=100.00  E-value=4.2e-43  Score=277.32  Aligned_cols=119  Identities=34%  Similarity=0.647  Sum_probs=110.6

Q ss_pred             cccccCCCCCCCCch-----------hhhhhHhHHHHhcCCCCCCcc--h-hhHHHHHHHHhhhhccchhHHHHHHHHHH
Q 032435           21 SLFITLPKLPLSPLN-----------EKQNCLAIVAKASGESSESST--S-LTVFKSVQNVWDNSSEDRLGLIGLGFAGI   86 (141)
Q Consensus        21 ~~~~~~~~~p~~~~~-----------~~~~~~~v~~~as~e~~~~~~--~-~e~~~~lq~~Wd~~~e~k~~~~~l~~aai   86 (141)
                      +++.++|.||.|++.           ||+..++|++||++|++++..  + +|++|++||+||+ +|||+++++++++++
T Consensus        26 ~~~~~lp~lppp~~~~~~~~~~~~~~c~~~~r~vv~~a~ge~s~~~~~~~~~ei~k~~~e~Wd~-~EdK~av~~l~~aai  104 (167)
T PLN02777         26 PQCVSLPTLPPPPVQSHNRPAKATAYCRKIARNVVTMATGEAPAEVETTELPEIVKTVQEAWDK-VEDKYAVSSLAFAGV  104 (167)
T ss_pred             CccccCCCCCCCCcccCCCcchhHHHHHHhHHHHHHHhccCCCcccccccHHHHHHHHHHHHhh-hcchhHHHHHHHHHH
Confidence            478889999877763           889999999999999887532  2 5999999999999 999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCCchhhHHHHHHHHHhhhhhhhhhcccchh-HHHHhhhc
Q 032435           87 VALWASVNLITAIDKLPIIPNALELIGILFSTVSVIEIIIWHGCCE-WEKKIKES  140 (141)
Q Consensus        87 val~~~~~vl~AId~iPLlp~llELVGigYt~WFvyRyLl~~~~R~-l~~kik~~  140 (141)
                      |++|++.+||+|||+|||+|++||||||||++||+||||+|++||| |++||++.
T Consensus       105 Val~v~~~VL~AId~lPLlP~lLELVGigYs~WF~yRyLLfke~ReeL~~ki~~l  159 (167)
T PLN02777        105 VALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFAYKNLVFKPDREALIEKIKDT  159 (167)
T ss_pred             HHHHHHHHHHHHHhccccccchHHHhhhhhhhhhhhhHhcCcccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999 99999975

>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Probab=99.96  E-value=5.2e-29  Score=179.40  Aligned_cols=81  Identities=27%  Similarity=0.428  Sum_probs=71.7

Q ss_pred             hHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHHHHHhhhhhhhhhcccchh-HHHHh
Q 032435           59 TVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITAIDKLPIIPNALELIGILFSTVSVIEIIIWHGCCE-WEKKI  137 (141)
Q Consensus        59 e~~~~lq~~Wd~~~e~k~~~~~l~~aaival~~~~~vl~AId~iPLlp~llELVGigYt~WFvyRyLl~~~~R~-l~~ki  137 (141)
                      ++.+++++.|++ +......+++++++++++|++.++++|||+||++|++||+||+||++||+||||+|++||| |.+|+
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ryLL~~~~R~el~~~i   81 (90)
T PF14159_consen    3 KLPEYWGEFFDK-YKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRYLLFAENRQELLQKI   81 (90)
T ss_pred             hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHHHcChHhHHHHHHHH
Confidence            455666666666 6666667778888899999999999999999999999999999999999999999999999 99999


Q ss_pred             hhc
Q 032435          138 KES  140 (141)
Q Consensus       138 k~~  140 (141)
                      ++.
T Consensus        82 ~~~   84 (90)
T PF14159_consen   82 QSL   84 (90)
T ss_pred             HHH
Confidence            864

>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Probab=88.47  E-value=0.86  Score=32.89  Aligned_cols=47  Identities=17%  Similarity=0.273  Sum_probs=36.4

Q ss_pred             HHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHH-HHhhccCCchhh
Q 032435           61 FKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLI-TAIDKLPIIPNA  108 (141)
Q Consensus        61 ~~~lq~~Wd~~~e~k~~~~~l~~aaival~~~~~vl-~AId~iPLlp~l  108 (141)
                      ++++++.|++ .++++....++++++++.-+..-+. ..+|.|--+|-+
T Consensus         1 l~~~~~~~~~-~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll   48 (90)
T PF14159_consen    1 LSKLPEYWGE-FFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLL   48 (90)
T ss_pred             CchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcch
Confidence            3689999999 8999999999999988876666555 456767666643

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00