Citrus Sinensis ID: 032442

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MGKLSLCALLFLCSLAIAAAQSASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQLVGRDNSQNQLIVNYQFVNCGD
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccccccccccccccccccccccccccccccEEEEcccccccccccccEEEEEEcccccEEEEEEEEccccccccccHHHHHHHccccccccEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEHHHHHHHHccccccEEEEEEEcccHccccHcHEEEEEcccccccccHHHHHcccEEEEcccccccccccccEEEEEccccccEEEEEEEEccccccccccHHHHHHcccccccccEEEEEEEEEcccc
Coil and Loop (DISEMBL)
MGKLSLCALLFLCSLAIAAAQSASnvratshsynpeqhgwdlnAVGAYcstrdankplawrrkygwtafcgpvgprgqaacgkclrvtnrgtgaQVTVRIVDqcsnggldldaGVFRQlvgrdnsqnqlIVNYQFVNCGD
Flexible Loop (DISEMBL)
MGKLSLCALLFLCSLAIAAAQSASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQLvgrdnsqnqlivnyqfvncgd
Low Complexity Region (SEG)
MGKlslcallflcslaiaaaQSASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQLVGRDNSQNQLIVNYQFVNCGD
Disordered region (IsUnstruct)
***LSLCALLFLCSLAIAAAQSA**V******YNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQLVGRDNSQNQLIVNYQFVNC**
Disordered Region (DISOPRED)
****SLCALLFLCSLAIAAAQSASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQLVGRDNSQNQLIVNYQFVNCGD
Disordered Region (DISEMBL)
MGKLSLCALLFLCSLAIAAAQ************NPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQLVGRDNSQNQLIVNYQFVNCGD
Disordered Region (DISPRO)
*GKLSLCALLFLCSLAIAAAQSASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQLVGRDNSQNQLIVNYQFVNCGD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGKLSLCALLFLCSLAIAAAQSASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQLVGRDNSQNQLIVNYQFVNCGD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	140	2.2.26 [Sep-21-2011]
P09761	200	Wound-induced protein WIN	N/A	no	0.85	0.595	0.768	1e-48
P09762	211	Wound-induced protein WIN	N/A	no	0.85	0.563	0.768	2e-47
P29063	147	Pathogenesis-related prot	N/A	no	0.985	0.938	0.657	2e-45
P02877	204	Pro-hevein OS=Hevea brasi	N/A	no	0.85	0.583	0.710	7e-45
P32045	143	Pathogenesis-related prot	N/A	no	0.957	0.937	0.623	6e-44
P43082	212	Hevein-like preproprotein	yes	no	0.857	0.566	0.704	7e-44
P29062	147	Pathogenesis-related prot	N/A	no	0.985	0.938	0.65	2e-42
P28814	125	Barwin OS=Hordeum vulgare	N/A	no	0.857	0.96	0.664	4e-39
O64393	148	Wheatwin-2 OS=Triticum ae	N/A	no	0.828	0.783	0.661	2e-37
P83343	107	Pathogenesis-related prot	N/A	no	0.721	0.943	0.699	6e-37

>sp|P09761|WIN1_SOLTU Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1

 Score =  191 bits (484), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/121 (76%), Positives = 100/121 (82%), Gaps = 2/121 (1%)

Query: 22  SASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAAC 81
           SA NVRAT H YNP+  GWDLNAV AYCST DANKPL+WR+KYGWTAFCGPVGPRG+ +C
Sbjct: 79  SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSC 138

Query: 82  GKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQL--VGRDNSQNQLIVNYQFVNCG 139
           GKCLRVTN  TGAQ TVRIVDQCSNGGLDLD  VFRQ+   G  N Q  LIVNYQFV+CG
Sbjct: 139 GKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDVNVFRQIDTDGNGNHQGHLIVNYQFVDCG 198

Query: 140 D 140
           D
Sbjct: 199 D 199

Solanum tuberosum (taxid: 4113)

>sp|P09762|WIN2_SOLTU Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1

 Score =  187 bits (474), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/121 (76%), Positives = 98/121 (80%), Gaps = 2/121 (1%)

Query: 22  SASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAAC 81
           SA NVRAT H YNP+  GWDLNAV AYCST DANKP AWR KYGWTAFCGPVGPRG+ +C
Sbjct: 78  SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRGRDSC 137

Query: 82  GKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQL--VGRDNSQNQLIVNYQFVNCG 139
           GKCLRVTN  TGAQ TVRIVDQCSNGGLDLD  VF+Q+   G  N Q  LIVNYQFVNCG
Sbjct: 138 GKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNCG 197

Query: 140 D 140
           D
Sbjct: 198 D 198

Solanum tuberosum (taxid: 4113)

>sp|P29063|PR4B_TOBAC Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1

 Score =  180 bits (456), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/140 (65%), Positives = 106/140 (75%), Gaps = 2/140 (1%)

Query: 3   KLSLCALLFLCSLAIAAAQSASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRR 62
           KL +  L+    +A+AAAQSA+NVR+T H YNP+   WDL A  A+C+T DA+KPLAWR+
Sbjct: 8   KLCVALLIMSVMMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQ 67

Query: 63  KYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQLV-- 120
           KYGWTAFCGP GPRGQ +CG+CLRVTN GTG Q TVRIVDQCSNGGLDLD  VF QL   
Sbjct: 68  KYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATVRIVDQCSNGGLDLDVNVFNQLDTN 127

Query: 121 GRDNSQNQLIVNYQFVNCGD 140
           G    Q  LIVNY+FVNC D
Sbjct: 128 GLGYQQGHLIVNYEFVNCND 147

Nicotiana tabacum (taxid: 4097)

>sp|P02877|HEVE_HEVBR Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2

 Score =  178 bits (452), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 86/121 (71%), Positives = 95/121 (78%), Gaps = 2/121 (1%)

Query: 22  SASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAAC 81
           SASNV AT H YN + HGWDLNA  AYCST DANKP +WR KYGWTAFCGPVG  GQ++C
Sbjct: 69  SASNVLATYHLYNSQDHGWDLNAASAYCSTWDANKPYSWRSKYGWTAFCGPVGAHGQSSC 128

Query: 82  GKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQL--VGRDNSQNQLIVNYQFVNCG 139
           GKCL VTN GTGA+ TVRIVDQCSNGGLDLD  VFRQL   G+   +  + VNYQFV+CG
Sbjct: 129 GKCLSVTNTGTGAKTTVRIVDQCSNGGLDLDVNVFRQLDTDGKGYERGHITVNYQFVDCG 188

Query: 140 D 140
           D
Sbjct: 189 D 189

N-acetyl-D-glucosamine / N-acetyl-D-neuraminic acid binding lectin. Can inhibit fungal growth.

Hevea brasiliensis (taxid: 3981)

>sp|P32045|PRP2_SOLLC Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1

 Score =  175 bits (444), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 100/138 (72%), Gaps = 4/138 (2%)

Query: 5   SLCALLFLCSL--AIAAAQSASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRR 62
            LC   F+ ++  A+AAAQSA+NVRAT H YNP+   WDL     YC+T DA+KPL WRR
Sbjct: 6   KLCVAFFVINMMMAVAAAQSATNVRATYHLYNPQNINWDLRTASVYCATWDADKPLEWRR 65

Query: 63  KYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQLV-- 120
           +YGWTAFCGP GP GQA+CG+CLRVTN GTG Q TVRIVDQC NGGLDLD  VF +L   
Sbjct: 66  RYGWTAFCGPAGPTGQASCGRCLRVTNTGTGTQETVRIVDQCRNGGLDLDVNVFNRLDTN 125

Query: 121 GRDNSQNQLIVNYQFVNC 138
           G    +  L VNY+FVNC
Sbjct: 126 GLGYQRGNLNVNYEFVNC 143

Solanum lycopersicum (taxid: 4081)

>sp|P43082|HEVL_ARATH Hevein-like preproprotein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1

 Score =  175 bits (444), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 86/122 (70%), Positives = 95/122 (77%), Gaps = 2/122 (1%)

Query: 21  QSASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAA 80
           +SASNVRAT H YNP Q+ WDL AV AYCST DA+KP AWR KYGWTAFCGP GPRGQA+
Sbjct: 72  ESASNVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQAS 131

Query: 81  CGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQL--VGRDNSQNQLIVNYQFVNC 138
           CGKCLRV N  T A VTVRIVDQCSNGGLDLD  +F Q+   G    Q  LIV+YQFV+C
Sbjct: 132 CGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVDC 191

Query: 139 GD 140
           G+
Sbjct: 192 GN 193

Arabidopsis thaliana (taxid: 3702)

>sp|P29062|PR4A_TOBAC Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1

 Score =  170 bits (431), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/140 (65%), Positives = 105/140 (75%), Gaps = 2/140 (1%)

Query: 3   KLSLCALLFLCSLAIAAAQSASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRR 62
           KL +  L+    +A+AAAQSA+NVR+T H YNP+   WDL A  A+C+T DA+KPLAWR+
Sbjct: 8   KLCVALLIISMVMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQ 67

Query: 63  KYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQLV-- 120
           KYGWTAFCGP GPRGQ +CG+CLRVTN GTG Q TVRIVDQCSNGGLDLD  VF QL   
Sbjct: 68  KYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQTTVRIVDQCSNGGLDLDVNVFNQLDTN 127

Query: 121 GRDNSQNQLIVNYQFVNCGD 140
           G    Q  L VNY+FVNC D
Sbjct: 128 GVGYQQGHLTVNYEFVNCND 147

Nicotiana tabacum (taxid: 4097)

>sp|P28814|BARW_HORVU Barwin OS=Hordeum vulgare PE=1 SV=1

 Score =  159 bits (402), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/125 (66%), Positives = 94/125 (75%), Gaps = 5/125 (4%)

Query: 21  QSASNVRATSHSYNPEQHGWDLNA--VGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQ 78
           Q A++VRAT H Y P Q+ WDL A  V AYC+T DA+KPL+WR KYGWTAFCGP GPRGQ
Sbjct: 1   QQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQ 60

Query: 79  AACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLD-AGVFRQLV--GRDNSQNQLIVNYQF 135
           AACGKCLRVTN  TGAQ+T RIVDQC+NGGLDLD   VF ++   G    Q  L VNYQF
Sbjct: 61  AACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQF 120

Query: 136 VNCGD 140
           V+C D
Sbjct: 121 VDCRD 125

May be involved in a defense mechanism. Probable plant lectin. Binds weakly a chitin analog.

Hordeum vulgare (taxid: 4513)

>sp|O64393|WHW2_WHEAT Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1

 Score =  154 bits (388), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/121 (66%), Positives = 89/121 (73%), Gaps = 5/121 (4%)

Query: 25  NVRATSHSYNPEQHGWDLNA--VGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAACG 82
           NVRAT H Y P Q+ WDL A  V AYC+T DA+KPL+WR KYGWTAFCGP G  GQAACG
Sbjct: 28  NVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQAACG 87

Query: 83  KCLRVTNRGTGAQVTVRIVDQCSNGGLDLD-AGVFRQLV--GRDNSQNQLIVNYQFVNCG 139
           KCLRVTN  TGAQ+T RIVDQC+NGGLDLD   VF ++   G    Q  L VNYQFV+C 
Sbjct: 88  KCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCR 147

Query: 140 D 140
           D
Sbjct: 148 D 148

Shows antifungal activity towards B.cinerea and towards the wheat-specific pathogenic fungi F.culmorum and F.graminearum (groups 1 and 2).

Triticum aestivum (taxid: 4565)

>sp|P83343|PR4_PRUPE Pathogenesis-related protein PR-4 (Fragment) OS=Prunus persica PE=2 SV=1

 Score =  152 bits (384), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 72/103 (69%), Positives = 82/103 (79%), Gaps = 2/103 (1%)

Query: 40  WDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTVR 99
           WDL     +C+T DA+KPL+WR KYGWTAFCGPVGP GQ +CGKCL VTN GTGA+VTVR
Sbjct: 5   WDLRTASVFCATWDADKPLSWRSKYGWTAFCGPVGPTGQDSCGKCLLVTNTGTGAKVTVR 64

Query: 100 IVDQCSNGGLDLDAGVFRQLV--GRDNSQNQLIVNYQFVNCGD 140
           IVDQCSNGGLDLD  VF Q+   G+ N+Q  LIVNY FV+CGD
Sbjct: 65  IVDQCSNGGLDLDVNVFNQIDTNGQGNAQGHLIVNYDFVDCGD 107

May be involved in protecting plant tissues from pathogen infection.

Prunus persica (taxid: 3760)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
224123436	190	predicted protein [Populus trichocarpa]	0.914	0.673	0.784	2e-52
224123432	196	predicted protein [Populus trichocarpa]	0.828	0.591	0.864	4e-52
224131254	195	predicted protein [Populus trichocarpa]	0.842	0.605	0.841	3e-51
147844408	143	hypothetical protein VITISV_026189 [Viti	0.992	0.972	0.723	7e-51
362097039	143	pathogenesis-related protein 4 [Vitis ps	1.0	0.979	0.727	3e-50
225453022	143	PREDICTED: pathogenesis-related protein	1.0	0.979	0.720	4e-50
3511147	143	PR-4 type protein [Vitis vinifera] gi|29	1.0	0.979	0.713	5e-50
388895491	142	PR-4 protein [Chimonanthus praecox]	1.0	0.985	0.697	1e-49
351721773	142	uncharacterized protein LOC100526916 pre	1.0	0.985	0.676	2e-47
255580937	202	Wound-induced protein WIN2 precursor, pu	0.878	0.608	0.76	2e-47

>gi|224123436|ref|XP_002319078.1| predicted protein [Populus trichocarpa] gi|222857454|gb|EEE95001.1| predicted protein [Populus trichocarpa]

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/130 (78%), Positives = 111/130 (85%), Gaps = 2/130 (1%)

Query: 13  CSLAIAAAQSASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGP 72
           CS    A +SASNVRAT H YNP+Q+GWDLNAV AYCST DANKPL WRRKYGWTAFCGP
Sbjct: 61  CSPGTGAGESASNVRATYHYYNPDQNGWDLNAVSAYCSTWDANKPLEWRRKYGWTAFCGP 120

Query: 73  VGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQL--VGRDNSQNQLI 130
           VGP GQA+CG+CLRVTN GTGAQ TVRIVDQCSNGGLDLDAGVF+Q+   GR N+Q  LI
Sbjct: 121 VGPSGQASCGRCLRVTNTGTGAQATVRIVDQCSNGGLDLDAGVFQQIDTDGRGNAQGHLI 180

Query: 131 VNYQFVNCGD 140
           VNYQFV+CGD
Sbjct: 181 VNYQFVDCGD 190

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123432|ref|XP_002319077.1| predicted protein [Populus trichocarpa] gi|118487978|gb|ABK95810.1| unknown [Populus trichocarpa] gi|222857453|gb|EEE95000.1| predicted protein [Populus trichocarpa]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 102/118 (86%), Positives = 107/118 (90%), Gaps = 2/118 (1%)

Query: 25  NVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAACGKC 84
           NVRAT H YNP+Q+GWDLNAV AYCST DANKPLAWRRKYGWTAFCGPVGPRGQA+CGKC
Sbjct: 79  NVRATYHYYNPDQNGWDLNAVSAYCSTWDANKPLAWRRKYGWTAFCGPVGPRGQASCGKC 138

Query: 85  LRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQL--VGRDNSQNQLIVNYQFVNCGD 140
           LRVTN GTGAQVTVRIVDQCSNGGLDLDAGVFRQ+   GR N+Q  LIVNYQFVNCGD
Sbjct: 139 LRVTNTGTGAQVTVRIVDQCSNGGLDLDAGVFRQIDTDGRGNAQGHLIVNYQFVNCGD 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131254|ref|XP_002328493.1| predicted protein [Populus trichocarpa] gi|222838208|gb|EEE76573.1| predicted protein [Populus trichocarpa]

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/120 (84%), Positives = 108/120 (90%), Gaps = 2/120 (1%)

Query: 21  QSASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAA 80
           +SASNVRAT H YNPEQ+GWDLNAV AYCST DANKPLAWRR+YGWTAFCGPVGPRGQA+
Sbjct: 76  ESASNVRATYHFYNPEQNGWDLNAVRAYCSTWDANKPLAWRRQYGWTAFCGPVGPRGQAS 135

Query: 81  CGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQL--VGRDNSQNQLIVNYQFVNC 138
           CG+CLRVTN GTGAQ T+RIVDQCSNGGLDLDAGVFRQL   GR N+Q  LIVNYQFVNC
Sbjct: 136 CGRCLRVTNTGTGAQATMRIVDQCSNGGLDLDAGVFRQLDTDGRGNAQGHLIVNYQFVNC 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147844408|emb|CAN80017.1| hypothetical protein VITISV_026189 [Vitis vinifera] gi|296087926|emb|CBI35209.3| unnamed protein product [Vitis vinifera]

 Score =  204 bits (520), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 102/141 (72%), Positives = 108/141 (76%), Gaps = 2/141 (1%)

Query: 2   GKLSLCALLFLCSLAIAAAQSASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWR 61
           GK+     + L  +A AAAQ ASNVRAT H YNPEQHGWDLNAV AYC+T DANK LAWR
Sbjct: 3   GKIIYMVAVLLSLVACAAAQHASNVRATYHYYNPEQHGWDLNAVSAYCATWDANKSLAWR 62

Query: 62  RKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQLV- 120
            KYGWTAFCGP GP GQAACGKCL+VTN GTG Q TVRIVDQCSNGGLDLD  VF QL  
Sbjct: 63  SKYGWTAFCGPAGPTGQAACGKCLKVTNTGTGTQATVRIVDQCSNGGLDLDVAVFNQLDT 122

Query: 121 -GRDNSQNQLIVNYQFVNCGD 140
            G    Q  LIVNYQFV+CGD
Sbjct: 123 NGVGYLQGHLIVNYQFVDCGD 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|362097039|gb|AEW12795.1| pathogenesis-related protein 4 [Vitis pseudoreticulata]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 104/143 (72%), Positives = 112/143 (78%), Gaps = 3/143 (2%)

Query: 1   MGKLSLCALLFLCSL-AIAAAQSASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLA 59
           M +  +C ++ L SL A AAAQSASNVRAT H YNP Q+GWDLNAV AYCST DA+KPLA
Sbjct: 1   MERRGICKVVVLLSLVACAAAQSASNVRATYHYYNPAQNGWDLNAVSAYCSTWDASKPLA 60

Query: 60  WRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQL 119
           WR KYGWTAFCGP GP GQAACGKCL VTN  TG Q TVRIVDQCSNGGLDLD+GVF QL
Sbjct: 61  WRSKYGWTAFCGPSGPTGQAACGKCLSVTNTATGTQATVRIVDQCSNGGLDLDSGVFNQL 120

Query: 120 V--GRDNSQNQLIVNYQFVNCGD 140
              G   +Q  L VNYQFVNCGD
Sbjct: 121 DTNGAGYAQGHLKVNYQFVNCGD 143

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453022|ref|XP_002264720.1| PREDICTED: pathogenesis-related protein PR-4B [Vitis vinifera] gi|296087927|emb|CBI35210.3| unnamed protein product [Vitis vinifera]

 Score =  202 bits (513), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 103/143 (72%), Positives = 112/143 (78%), Gaps = 3/143 (2%)

Query: 1   MGKLSLCALLFLCSL-AIAAAQSASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLA 59
           M +  +C ++ L SL A AAAQSASNVRAT H YNP Q+GWDLNAV AYCST DA+KPLA
Sbjct: 1   MERRGICKVVVLLSLVACAAAQSASNVRATYHYYNPAQNGWDLNAVSAYCSTWDASKPLA 60

Query: 60  WRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQL 119
           WR KYGWTAFCGP GP GQAACGKCL VTN  TG Q TVRIVDQCSNGGLDLD+GVF QL
Sbjct: 61  WRSKYGWTAFCGPSGPTGQAACGKCLSVTNTATGTQATVRIVDQCSNGGLDLDSGVFNQL 120

Query: 120 V--GRDNSQNQLIVNYQFVNCGD 140
              G   ++  L VNYQFVNCGD
Sbjct: 121 DTNGAGYAKGHLTVNYQFVNCGD 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3511147|gb|AAC33732.1| PR-4 type protein [Vitis vinifera] gi|295814499|gb|ADG35965.1| pathogenesis-related protein 4 [Vitis hybrid cultivar]

 Score =  202 bits (513), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 102/143 (71%), Positives = 114/143 (79%), Gaps = 3/143 (2%)

Query: 1   MGKLSLCALLFLCSL-AIAAAQSASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLA 59
           M +  +C ++ L SL A AAAQSASNVRAT H YNPEQ+GWDLNAV AYCST DA++PLA
Sbjct: 1   MERRGICKVVVLLSLVACAAAQSASNVRATYHYYNPEQNGWDLNAVSAYCSTWDASQPLA 60

Query: 60  WRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQL 119
           WR KYGWTAFCGP GP GQAACGKCL VTN  TG Q TVRIVDQCSNGGLDLD+GVF +L
Sbjct: 61  WRSKYGWTAFCGPSGPTGQAACGKCLSVTNTATGTQATVRIVDQCSNGGLDLDSGVFNKL 120

Query: 120 V--GRDNSQNQLIVNYQFVNCGD 140
              G   +Q  LIVNY+FV+CGD
Sbjct: 121 DTNGAGYNQGHLIVNYEFVDCGD 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388895491|gb|AFK82275.1| PR-4 protein [Chimonanthus praecox]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 99/142 (69%), Positives = 108/142 (76%), Gaps = 2/142 (1%)

Query: 1   MGKLSLCALLFLCSLAIAAAQSASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAW 60
           MG L +  +  LC  A A AQSASNVRAT H YNP+Q GWD N    +C+T DANKPLAW
Sbjct: 1   MGNLGVSMVFLLCLAAYAEAQSASNVRATYHIYNPQQIGWDYNTASVFCATWDANKPLAW 60

Query: 61  RRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQLV 120
           R KYGWTAFCG VGPRGQA+CGKCLRVTN GTG+Q TVRIVDQCSNGGLDL+ GVFRQL 
Sbjct: 61  RSKYGWTAFCGLVGPRGQASCGKCLRVTNTGTGSQATVRIVDQCSNGGLDLEEGVFRQLD 120

Query: 121 --GRDNSQNQLIVNYQFVNCGD 140
             G    Q  LIVNY FV+CGD
Sbjct: 121 TNGAGIQQGHLIVNYDFVDCGD 142

Source: Chimonanthus praecox

Species: Chimonanthus praecox

Genus: Chimonanthus

Family: Calycanthaceae

Order: Laurales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721773|ref|NP_001235941.1| uncharacterized protein LOC100526916 precursor [Glycine max] gi|255631143|gb|ACU15937.1| unknown [Glycine max]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 96/142 (67%), Positives = 110/142 (77%), Gaps = 2/142 (1%)

Query: 1   MGKLSLCALLFLCSLAIAAAQSASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAW 60
           M K+SL  +  +C LA+A+AQSA+NVRAT H Y PEQH WDL AV AYCST DA+K LAW
Sbjct: 1   MAKVSLFVVCVVCILALASAQSATNVRATYHLYQPEQHNWDLLAVSAYCSTWDADKSLAW 60

Query: 61  RRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQLV 120
           R KYGWTAFCGP GP+GQ +CG+CLRVTN  T AQ TVRIVDQCSNGGLDLD G F++L 
Sbjct: 61  RSKYGWTAFCGPSGPQGQQSCGRCLRVTNTRTNAQETVRIVDQCSNGGLDLDIGPFQKLD 120

Query: 121 GRDN--SQNQLIVNYQFVNCGD 140
              N  +Q  LIVNY FV+CGD
Sbjct: 121 TDGNGIAQGHLIVNYDFVDCGD 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580937|ref|XP_002531287.1| Wound-induced protein WIN2 precursor, putative [Ricinus communis] gi|223529120|gb|EEF31100.1| Wound-induced protein WIN2 precursor, putative [Ricinus communis]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 95/125 (76%), Positives = 99/125 (79%), Gaps = 2/125 (1%)

Query: 18  AAAQSASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRG 77
              +SASNVRAT H YNP+QHGWDLNAV AYCST DANKP +WR KYGWTAFCGP GPRG
Sbjct: 66  GGGESASNVRATYHFYNPQQHGWDLNAVSAYCSTWDANKPYSWRSKYGWTAFCGPAGPRG 125

Query: 78  QAACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQL--VGRDNSQNQLIVNYQF 135
           Q +CGKCLRVTN  TGA  TVRIVDQCSNGGLDLD  VFRQL   G    Q  LIVNYQF
Sbjct: 126 QTSCGKCLRVTNTRTGAATTVRIVDQCSNGGLDLDVNVFRQLDTDGIGYQQGHLIVNYQF 185

Query: 136 VNCGD 140
           VNCGD
Sbjct: 186 VNCGD 190

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
TAIR|locus:2084918	212	PR4 "pathogenesis-related 4" [	0.857	0.566	0.704	1.3e-43
UNIPROTKB|P83343	107	P83343 "Pathogenesis-related p	0.721	0.943	0.699	1.1e-37
ASPGD|ASPL0000063545	366	eglD [Emericella nidulans (tax	0.785	0.300	0.289	0.00058

TAIR|locus:2084918 PR4 "pathogenesis-related 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 86/122 (70%), Positives = 95/122 (77%)

Query:    21 QSASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAA 80
             +SASNVRAT H YNP Q+ WDL AV AYCST DA+KP AWR KYGWTAFCGP GPRGQA+
Sbjct:    72 ESASNVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQAS 131

Query:    81 CGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQLV--GRDNSQNQLIVNYQFVNC 138
             CGKCLRV N  T A VTVRIVDQCSNGGLDLD  +F Q+   G    Q  LIV+YQFV+C
Sbjct:   132 CGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVDC 191

Query:   139 GD 140
             G+
Sbjct:   192 GN 193

GO:0005576 "extracellular region" evidence=ISM

GO:0016998 "cell wall macromolecule catabolic process" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEA;RCA

GO:0050832 "defense response to fungus" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0080027 "response to herbivore" evidence=IEP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0004540 "ribonuclease activity" evidence=IDA

GO:0004568 "chitinase activity" evidence=IDA

GO:0008061 "chitin binding" evidence=ISS

GO:0009615 "response to virus" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP

UNIPROTKB|P83343 P83343 "Pathogenesis-related protein PR-4" [Prunus persica (taxid:3760)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 72/103 (69%), Positives = 82/103 (79%)

Query:    40 WDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTVR 99
             WDL     +C+T DA+KPL+WR KYGWTAFCGPVGP GQ +CGKCL VTN GTGA+VTVR
Sbjct:     5 WDLRTASVFCATWDADKPLSWRSKYGWTAFCGPVGPTGQDSCGKCLLVTNTGTGAKVTVR 64

Query:   100 IVDQCSNGGLDLDAGVFRQLV--GRDNSQNQLIVNYQFVNCGD 140
             IVDQCSNGGLDLD  VF Q+   G+ N+Q  LIVNY FV+CGD
Sbjct:    65 IVDQCSNGGLDLDVNVFNQIDTNGQGNAQGHLIVNYDFVDCGD 107

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEP

ASPGD|ASPL0000063545 eglD [Emericella nidulans (taxid:162425)]

 Score = 94 (38.1 bits), Expect = 0.00058, P = 0.00058
 Identities = 35/121 (28%), Positives = 47/121 (38%)

Query:    22 SASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAAC 81
             S+S+    S +   E   +  N  G  CS  D   P          AF G       A C
Sbjct:   159 SSSSTSTNSGATTGEATFYGGNLSGGTCSFTDYTLP----SHLSGVAFSGQAWDNA-AEC 213

Query:    82 GKCLRVTNRGTGAQVTVRIVD---QCSNGGLDLDAGVFRQLVGRDNSQNQLIVNYQFVNC 138
             G C+ VT    G  V V +VD   +C+   LDL    F  L     S+ Q+ ++Y    C
Sbjct:   214 GACIAVTGPN-GNTVKVMVVDKCPECAQTHLDLFESAFTTLASA--SEGQIPISYSITPC 270

Query:   139 G 139
             G
Sbjct:   271 G 271


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.439    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      140       123   0.00091  102 3  11 22  0.38    31
                                                     29  0.50    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  587 (62 KB)
  Total size of DFA:  145 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.85u 0.22s 11.07t   Elapsed:  00:00:00
  Total cpu time:  10.85u 0.22s 11.07t   Elapsed:  00:00:00
  Start:  Sat May 11 05:23:51 2013   End:  Sat May 11 05:23:51 2013

GO:0031160 "spore wall" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P29063	PR4B_TOBAC	No assigned EC number	0.6571	0.9857	0.9387	N/A	no
P29062	PR4A_TOBAC	No assigned EC number	0.65	0.9857	0.9387	N/A	no
P43082	HEVL_ARATH	No assigned EC number	0.7049	0.8571	0.5660	yes	no
P32045	PRP2_SOLLC	No assigned EC number	0.6231	0.9571	0.9370	N/A	no
P28814	BARW_HORVU	No assigned EC number	0.664	0.8571	0.96	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	140
pfam00967	119	pfam00967, Barwin, Barwin family	7e-65

>gnl|CDD|201533 pfam00967, Barwin, Barwin family

 Score =  192 bits (490), Expect = 7e-65
 Identities = 88/119 (73%), Positives = 95/119 (79%), Gaps = 2/119 (1%)

Query: 22  SASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAAC 81
           SASNVRAT H YNP+Q+ WDLNA  AYC+T DANKPL+WR KYGWTAFCGP GPRGQ++C
Sbjct: 1   SASNVRATYHYYNPQQNNWDLNAASAYCATWDANKPLSWRSKYGWTAFCGPAGPRGQSSC 60

Query: 82  GKCLRVTNRGTGAQVTVRIVDQCSNGGLDLDAGVFRQL--VGRDNSQNQLIVNYQFVNC 138
           GKCLRVTN  TGA VTVRIVDQCSNGGLDLD  VF QL   G    Q  L VNYQFV+C
Sbjct: 61  GKCLRVTNTATGASVTVRIVDQCSNGGLDLDVNVFNQLDTDGAGYQQGHLNVNYQFVDC 119

Length = 119

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
PF00967	119	Barwin: Barwin family; InterPro: IPR001153 Barwin	100.0
PLN03024	125	Putative EG45-like domain containing protein 1; Pr	99.82
PF07249	119	Cerato-platanin: Cerato-platanin; InterPro: IPR010	99.73
PLN00050	247	expansin A; Provisional	99.72
PLN00193	256	expansin-A; Provisional	99.71
PLN03023	247	Expansin-like B1; Provisional	99.68
smart00837	87	DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b	99.57
PF03330	78	DPBB_1: Rare lipoprotein A (RlpA)-like double-psi	99.52
COG0797	233	RlpA Lipoproteins [Cell envelope biogenesis, outer	99.38
PRK10672	361	rare lipoprotein A; Provisional	99.27
TIGR00413	208	rlpA rare lipoprotein A. This is a family of proka	99.26
COG4305	232	Endoglucanase C-terminal domain/subunit and relate	98.73
PF04202	71	Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus	91.77
PF02015	201	Glyco_hydro_45: Glycosyl hydrolase family 45; Inte	88.55
PF08139	25	LPAM_1: Prokaryotic membrane lipoprotein lipid att	87.02

>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds

Probab=100.00  E-value=7.4e-49  Score=283.92  Aligned_cols=117  Identities=74%  Similarity=1.302  Sum_probs=92.7

Q ss_pred             cCCcceEEEeecCCCCCCCCCcccceeecccCCCCcchhccccceeeccCCCCCCCCccCCceEEEEeCCCCCEEEEEEe
Q 032442           22 SASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTVRIV  101 (140)
Q Consensus        22 ~~~~~~~tY~~y~p~~~~~~~~~~~~~Ca~~~~~~~~a~~~~y~~~A~~~p~~p~~~~~CGkci~Vtn~~~g~sv~v~Vv  101 (140)
                      ++++||+|||+|+|+++||+|+++|.||++||+++|++||++|+|+|||+|..|+++..||||++|||+.||++++||||
T Consensus         1 sa~nVraTYh~Y~p~~~nwdl~~~s~yCAtwda~kpl~wr~kYgWtAfCgp~g~~gq~~CGkClrVTNt~tga~~~~RIV   80 (119)
T PF00967_consen    1 SASNVRATYHYYNPAQNNWDLNAVSAYCATWDADKPLAWRSKYGWTAFCGPAGPMGQDSCGKCLRVTNTATGAQVTVRIV   80 (119)
T ss_dssp             EEEEEEEE-EESS-GGGTT-TTTT--TTHHHHTTS-CHHHHHS--EEC-STT---SGGGTT-EEEEE-TTT--EEEEEEE
T ss_pred             CccceeeeeeecCcccCCcccccceeeEeeecCCCCccccccCCeeEEecccCccCcccccceEEEEecCCCcEEEEEEE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCHHHHHHhh--CCCCCCcEEEEEEEEEec
Q 032442          102 DQCSNGGLDLDAGVFRQLV--GRDNSQNQLIVNYQFVNC  138 (140)
Q Consensus       102 D~C~~g~lDLS~~aF~~l~--g~~~~~G~~~V~w~~V~C  138 (140)
                      |+|++|+|||++.+|++|.  |+++..|++.|+|+||+|
T Consensus        81 DqCsnGGLDld~~vF~~iDtdG~G~~~Ghl~V~y~fV~C  119 (119)
T PF00967_consen   81 DQCSNGGLDLDPTVFNQIDTDGQGYAQGHLIVDYEFVDC  119 (119)
T ss_dssp             EE-SSSSEES-SSSHHHH-SSSHHHHHTEEEEEEEEE--
T ss_pred             EcCCCCCcccChhHHhhhccCCcccccceEEEEEEEEcC
Confidence            9999999999999999994  556899999999999999

It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.

>PLN03024 Putative EG45-like domain containing protein 1; Provisional

Probab=99.82  E-value=1.1e-19  Score=134.40  Aligned_cols=111  Identities=27%  Similarity=0.316  Sum_probs=76.5

Q ss_pred             CCchhHHHHHHHHHHHHhhhhcCCcceEEEeecCCCCCCCCCcccceeeccc-CCCCcchhccccceeeccCCCCCCCCc
Q 032442            1 MGKLSLCALLFLCSLAIAAAQSASNVRATSHSYNPEQHGWDLNAVGAYCSTR-DANKPLAWRRKYGWTAFCGPVGPRGQA   79 (140)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~a~~~~~~~~tY~~y~p~~~~~~~~~~~~~Ca~~-~~~~~~a~~~~y~~~A~~~p~~p~~~~   79 (140)
                      |.|.-++++.+++.|..++  .+.+.++||  |++..    .    ++|... ..+.        .-.|++.+.| ++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~--~~~~G~AT~--Y~~~~----~----gAC~~~~~~g~--------~iaAls~~lf-~~G~   59 (125)
T PLN03024          1 MSKRILIFSTVLVFLFSVS--YATPGIATF--YTSYT----P----SACYRGTSFGV--------MIAAASDSLW-NNGR   59 (125)
T ss_pred             CceeeHHHHHHHHHHhhhh--cccceEEEE--eCCCC----C----ccccCCCCCCC--------EeEEeCHHHc-CCCc
Confidence            5555344444444444333  233567887  77642    2    256432 1112        2356666666 7889


Q ss_pred             cCCceEEEEeC---------CCCCEEEEEEeeCCCC---CCCCCCHHHHHHhhCCCCCCcEEEEEEE
Q 032442           80 ACGKCLRVTNR---------GTGAQVTVRIVDQCSN---GGLDLDAGVFRQLVGRDNSQNQLIVNYQ  134 (140)
Q Consensus        80 ~CGkci~Vtn~---------~~g~sv~v~VvD~C~~---g~lDLS~~aF~~l~g~~~~~G~~~V~w~  134 (140)
                      .||+|++|++.         .+|++|+|+|+|+||.   ++||||++||++|+.  .+.|+++|+|.
T Consensus        60 ~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD~CP~~C~~~~DLS~~AF~~iA~--~~aG~v~V~y~  124 (125)
T PLN03024         60 VCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVDHCPSGCASTLDLSREAFAQIAN--PVAGIINIDYI  124 (125)
T ss_pred             ccCceEEEEECCCCccccccccCCeEEEEEEcCCCCCCCCceEcCHHHHHHhcC--ccCCEEEEEEe
Confidence            99999999963         2689999999999973   599999999999964  78999999996

>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family

Probab=99.73  E-value=2.7e-17  Score=120.71  Aligned_cols=101  Identities=20%  Similarity=0.366  Sum_probs=80.1

Q ss_pred             ceEEEeecCCCCCCCCCcccceeecccCCCCcchhccccceeeccC-CCCC----------CCCccCCceEEEEeCCCCC
Q 032442           26 VRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCG-PVGP----------RGQAACGKCLRVTNRGTGA   94 (140)
Q Consensus        26 ~~~tY~~y~p~~~~~~~~~~~~~Ca~~~~~~~~a~~~~y~~~A~~~-p~~p----------~~~~~CGkci~Vtn~~~g~   94 (140)
                      |.++|   |+.+++-+.++.+.+|++..++..    .|| |..+.. |.||          |+++.||.|++|++  +|+
T Consensus         1 vtv~y---d~~YD~~~~sl~~vaCSdg~nGL~----tk~-~~t~g~lp~Fp~IGg~~~V~gWnS~~CGtC~~lty--~g~   70 (119)
T PF07249_consen    1 VTVSY---DTGYDDASRSLTTVACSDGPNGLI----TKG-YPTFGSLPNFPYIGGAPAVAGWNSPNCGTCWKLTY--NGR   70 (119)
T ss_dssp             -EEEE----CCGGSTT-BGGGSSSSSTTTSCC----CCH--SBCCCSTTTTSEEEETT--STT-TTTT-EEEEEE--TTE
T ss_pred             CeeEe---cCCCCCCCCccceEEecCCCCccc----ccC-ccchhhcCCCCeeccccccccCCCCCCCCeEEEEE--CCe
Confidence            35667   999999999999999999999886    787 888877 8888          78999999999996  899


Q ss_pred             EEEEEEeeCCCCCCCCCCHHHHHHh-hCCCCCCcEEEEEEEEEe
Q 032442           95 QVTVRIVDQCSNGGLDLDAGVFRQL-VGRDNSQNQLIVNYQFVN  137 (140)
Q Consensus        95 sv~v~VvD~C~~g~lDLS~~aF~~l-~g~~~~~G~~~V~w~~V~  137 (140)
                      +|.+..+|.- .+++|++++||+.| .|+....|+|+++++.|+
T Consensus        71 si~vlaID~a-~~gfnis~~A~n~LT~g~a~~lG~V~a~~~qV~  113 (119)
T PF07249_consen   71 SIYVLAIDHA-GGGFNISLDAMNDLTNGQAVELGRVDATYTQVD  113 (119)
T ss_dssp             EEEEEEEEE--SSSEEE-HHHHHHHHTS-CCCC-EEE-EEEEE-
T ss_pred             EEEEEEEecC-CCcccchHHHHHHhcCCcccceeEEEEEEEEcC
Confidence            9999999997 67899999999999 457789999999999986

It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.

>PLN00050 expansin A; Provisional

Probab=99.72  E-value=3.8e-17  Score=132.85  Aligned_cols=126  Identities=20%  Similarity=0.365  Sum_probs=86.3

Q ss_pred             CCchhHHHHHHHHHHHHhh--hhcCCcceEEEeecCCCCCCCCCcccceeecccCCCCcchhccccc--eeeccCCCCCC
Q 032442            1 MGKLSLCALLFLCSLAIAA--AQSASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYG--WTAFCGPVGPR   76 (140)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~--a~~~~~~~~tY~~y~p~~~~~~~~~~~~~Ca~~~~~~~~a~~~~y~--~~A~~~p~~p~   76 (140)
                      |+-+..-++.+|.+|-..+  +..=...+|||  |-.. +.  .++.+++|+..+....     .|+  ..|++.+.| +
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~W~~a~AT~--Yg~~-dg--~gt~gGACGYg~l~~~-----~~g~~~AAls~~lf-~   69 (247)
T PLN00050          1 MECLGYTIVALLSILKIVEGYGSGWTGAHATF--YGGG-DA--SGTMGGACGYGNLYSQ-----GYGTNTAALSTALF-N   69 (247)
T ss_pred             CcchhhhHHHHhhhheeccccCCCccccEEEE--cCCC-CC--CCCCCcccCCCCcccc-----CCCceeeeccHhHc-c
Confidence            5555444555555552222  22234567888  4322 11  2345689987753221     122  355555666 7


Q ss_pred             CCccCCceEEEEeCCC-----CCEEEEEEeeCCCC----------------CCCCCCHHHHHHhhCCCCCCcEEEEEEEE
Q 032442           77 GQAACGKCLRVTNRGT-----GAQVTVRIVDQCSN----------------GGLDLDAGVFRQLVGRDNSQNQLIVNYQF  135 (140)
Q Consensus        77 ~~~~CGkci~Vtn~~~-----g~sv~v~VvD~C~~----------------g~lDLS~~aF~~l~g~~~~~G~~~V~w~~  135 (140)
                      ++..||+|++|+++..     +++|+|+|+|+||.                .|||||+.||.+|+.  ...|+++|+|+.
T Consensus        70 ~G~~CGaCyeV~C~~~~~~C~~gsV~V~itd~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~--~~aGii~V~yRR  147 (247)
T PLN00050         70 NGLSCGACFEIKCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQ--YKAGIVPVQYRR  147 (247)
T ss_pred             CCccccceEEEEcCCCCcccCCCcEEEEEecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhh--hcCCeeeeEEEE
Confidence            8999999999998542     24899999999963                799999999999974  788999999999


Q ss_pred             EecC
Q 032442          136 VNCG  139 (140)
Q Consensus       136 V~C~  139 (140)
                      |+|.
T Consensus       148 VpC~  151 (247)
T PLN00050        148 VACR  151 (247)
T ss_pred             ecCc
Confidence            9996

>PLN00193 expansin-A; Provisional

Probab=99.71  E-value=1.1e-16  Score=130.65  Aligned_cols=102  Identities=23%  Similarity=0.383  Sum_probs=75.4

Q ss_pred             cceEEEeecCCCCCCCCCcccceeecccCCCCcchhccccc--eeeccCCCCCCCCccCCceEEEEeCC--------CCC
Q 032442           25 NVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYG--WTAFCGPVGPRGQAACGKCLRVTNRG--------TGA   94 (140)
Q Consensus        25 ~~~~tY~~y~p~~~~~~~~~~~~~Ca~~~~~~~~a~~~~y~--~~A~~~p~~p~~~~~CGkci~Vtn~~--------~g~   94 (140)
                      ..++||  |.....   .++.+++|+..+-..     ..|+  .+|++.+.| +++..||+|++|++..        +|+
T Consensus        32 ~a~AT~--Yg~~d~---~gt~gGACGYg~l~~-----~~~g~~~AAls~~lf-~~G~~CGaCyev~C~~~~~~~~C~~g~  100 (256)
T PLN00193         32 KAHATF--YGGSDA---SGTMGGACGYGNLYS-----TGYGTRTAALSTALF-NDGASCGQCYRIMCDYQADSRWCIKGA  100 (256)
T ss_pred             eeEEEE--cCCCCC---CCCCCcccCCCCccc-----cCCCceeeecCHhHc-cCCccccCeEEEECCCCCCCccccCCC
Confidence            456777  553321   123468998764321     2222  355555666 7889999999999842        467


Q ss_pred             EEEEEEeeCCCC----------------CCCCCCHHHHHHhhCCCCCCcEEEEEEEEEecC
Q 032442           95 QVTVRIVDQCSN----------------GGLDLDAGVFRQLVGRDNSQNQLIVNYQFVNCG  139 (140)
Q Consensus        95 sv~v~VvD~C~~----------------g~lDLS~~aF~~l~g~~~~~G~~~V~w~~V~C~  139 (140)
                      +|+|+|+|+||.                .|||||+.||.+|+.  ...|+++|+|+.|+|.
T Consensus       101 sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~--~~~Giv~V~yrRVpC~  159 (256)
T PLN00193        101 SVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGI--YRGGIVPVLFQRVPCK  159 (256)
T ss_pred             eEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhh--hcCCeEeEEEEEeccc
Confidence            999999999963                589999999999974  7899999999999996

>PLN03023 Expansin-like B1; Provisional

Probab=99.68  E-value=6.9e-16  Score=125.49  Aligned_cols=105  Identities=19%  Similarity=0.337  Sum_probs=76.6

Q ss_pred             CCcceEEEeecCCCCCCCCCcccceeecccCCCCcchhccccce--eeccCCCCCCCCccCCceEEEEeCC----CCCEE
Q 032442           23 ASNVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGW--TAFCGPVGPRGQAACGKCLRVTNRG----TGAQV   96 (140)
Q Consensus        23 ~~~~~~tY~~y~p~~~~~~~~~~~~~Ca~~~~~~~~a~~~~y~~--~A~~~p~~p~~~~~CGkci~Vtn~~----~g~sv   96 (140)
                      =...+|||  |.+.+.   .++.+++|+..+...+.     |+.  .|. .+.| +++..||+|++|+|..    .+++|
T Consensus        25 W~~a~AT~--Yg~~~g---~gt~gGACGYg~~~~~~-----~g~~~aa~-s~Lf-~~G~~CGaCy~irC~~~~~C~~~~v   92 (247)
T PLN03023         25 FTYSRATY--YGSPDC---LGTPTGACGFGEYGRTV-----NGGNVAGV-SRLY-RNGTGCGACYQVRCKAPNLCSDDGV   92 (247)
T ss_pred             cccceEEE--eCCCCC---CCCCCccccCCccccCC-----Ccceeeee-hhhh-cCCchhcccEEeecCCCCccCCCCe
Confidence            34557787  554431   23457899887644432     221  233 2555 7889999999999964    46689


Q ss_pred             EEEEeeCC--CCCCCCCCHHHHHHhhCCC-----CCCcEEEEEEEEEecC
Q 032442           97 TVRIVDQC--SNGGLDLDAGVFRQLVGRD-----NSQNQLIVNYQFVNCG  139 (140)
Q Consensus        97 ~v~VvD~C--~~g~lDLS~~aF~~l~g~~-----~~~G~~~V~w~~V~C~  139 (140)
                      +|+|+|.|  +..|||||..||.+|+..+     ...|+++|+|+.|+|.
T Consensus        93 ~V~iTd~~~~~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~  142 (247)
T PLN03023         93 NVVVTDYGEGDKTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCR  142 (247)
T ss_pred             EEEEEeCCCCCCCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecc
Confidence            99999998  4689999999999996312     4679999999999995

>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Probab=99.57  E-value=4.3e-15  Score=103.61  Aligned_cols=63  Identities=22%  Similarity=0.439  Sum_probs=51.9

Q ss_pred             eccCCCCCCCCccCCceEEEEeC------CCCCEEEEEEeeCCCC----------------CCCCCCHHHHHHhhCCCCC
Q 032442           68 AFCGPVGPRGQAACGKCLRVTNR------GTGAQVTVRIVDQCSN----------------GGLDLDAGVFRQLVGRDNS  125 (140)
Q Consensus        68 A~~~p~~p~~~~~CGkci~Vtn~------~~g~sv~v~VvD~C~~----------------g~lDLS~~aF~~l~g~~~~  125 (140)
                      |++.+.| +++..||+|++|++.      .++++|+|+|+|+||.                +|||||+.||.+|+.  ..
T Consensus         3 A~s~~lf-~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~--~~   79 (87)
T smart00837        3 ALSTALF-NNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQ--YK   79 (87)
T ss_pred             ccCHHHc-cCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhh--hc
Confidence            3444455 788999999999973      1356999999999963                599999999999974  78


Q ss_pred             CcEEEEEE
Q 032442          126 QNQLIVNY  133 (140)
Q Consensus       126 ~G~~~V~w  133 (140)
                      .|+|+|+|
T Consensus        80 ~Gvi~v~y   87 (87)
T smart00837       80 AGIVPVKY   87 (87)
T ss_pred             CCEEeeEC
Confidence            99999986

Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.

>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures

Probab=99.52  E-value=1e-14  Score=98.60  Aligned_cols=55  Identities=33%  Similarity=0.612  Sum_probs=45.5

Q ss_pred             CCccCCceEEEEeC---CC-----C--CEEEEEEeeCCC---CCCCCCCHHHHHHhhCCCCCCcEEEEEE
Q 032442           77 GQAACGKCLRVTNR---GT-----G--AQVTVRIVDQCS---NGGLDLDAGVFRQLVGRDNSQNQLIVNY  133 (140)
Q Consensus        77 ~~~~CGkci~Vtn~---~~-----g--~sv~v~VvD~C~---~g~lDLS~~aF~~l~g~~~~~G~~~V~w  133 (140)
                      ++..||+|+++++.   ..     .  ++|+|+|+|+||   .++||||++||++|+.  .+.|+++|+|
T Consensus        11 ~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~~~~~~lDLS~~aF~~la~--~~~G~i~V~w   78 (78)
T PF03330_consen   11 NGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPGCPPNHLDLSPAAFKALAD--PDAGVIPVEW   78 (78)
T ss_dssp             GGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TTSSSSEEEEEHHHHHHTBS--TTCSSEEEEE
T ss_pred             CCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCCCcCCEEEeCHHHHHHhCC--CCceEEEEEC
Confidence            45889999999981   11     1  999999999996   7999999999999964  8999999999

They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.

>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]

Probab=99.38  E-value=1.7e-12  Score=104.56  Aligned_cols=81  Identities=22%  Similarity=0.200  Sum_probs=71.3

Q ss_pred             ccCCCCcchhccccceeecc--CCCCCCCCccCCceEEEEeCCCCCEEEEEEeeCCC---CCCCCCCHHHHHHhhCCCCC
Q 032442           51 TRDANKPLAWRRKYGWTAFC--GPVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCS---NGGLDLDAGVFRQLVGRDNS  125 (140)
Q Consensus        51 ~~~~~~~~a~~~~y~~~A~~--~p~~p~~~~~CGkci~Vtn~~~g~sv~v~VvD~C~---~g~lDLS~~aF~~l~g~~~~  125 (140)
                      ...+++.++.+++|++.+|.  |+..|.++.     ++|||..||++|+|||.|++|   .+.||||.+|+++|+  ...
T Consensus        92 ~~fhgr~TA~Ge~~n~~~~tAAH~TLP~~t~-----v~VtNl~NgrsvvVRINDRGPf~~gRiIDlS~aAA~~l~--~~~  164 (233)
T COG0797          92 EKFHGRKTANGERYDMNALTAAHKTLPLPTY-----VRVTNLDNGRSVVVRINDRGPFVSGRIIDLSKAAADKLG--MIR  164 (233)
T ss_pred             cccCCccccCcccccccccccccccCCCCCE-----EEEEEccCCcEEEEEEeCCCCCCCCcEeEcCHHHHHHhC--Ccc
Confidence            34557888999999999995  478888887     999999999999999999996   578999999999995  489


Q ss_pred             CcEEEEEEEEEec
Q 032442          126 QNQLIVNYQFVNC  138 (140)
Q Consensus       126 ~G~~~V~w~~V~C  138 (140)
                      .|+.+|..+++.+
T Consensus       165 ~G~a~V~i~~l~~  177 (233)
T COG0797         165 SGVAKVRIEVLGV  177 (233)
T ss_pred             CceEEEEEEEecc
Confidence            9999999999875

>PRK10672 rare lipoprotein A; Provisional

Probab=99.27  E-value=5.9e-11  Score=100.96  Aligned_cols=80  Identities=21%  Similarity=0.268  Sum_probs=62.4

Q ss_pred             cccCCCCcchhccccceeecc--CCCCCCCCccCCceEEEEeCCCCCEEEEEEeeCCC---CCCCCCCHHHHHHhhCCCC
Q 032442           50 STRDANKPLAWRRKYGWTAFC--GPVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCS---NGGLDLDAGVFRQLVGRDN  124 (140)
Q Consensus        50 a~~~~~~~~a~~~~y~~~A~~--~p~~p~~~~~CGkci~Vtn~~~g~sv~v~VvD~C~---~g~lDLS~~aF~~l~g~~~  124 (140)
                      +....++.++.++.|...+|.  |+..|.++-     ++|||..||++|+|+|.|++|   .+.||||+.|+++|+  ..
T Consensus        87 g~~f~G~~TA~Ge~~~~~~~tAAH~tLPlps~-----vrVtNl~ngrsvvVrVnDRGP~~~gRiiDLS~aAA~~Lg--~~  159 (361)
T PRK10672         87 DAEAGSNLTASGERFDPNALTAAHPTLPIPSY-----VRVTNLANGRMIVVRINDRGPYGPGRVIDLSRAAADRLN--TS  159 (361)
T ss_pred             CCccCCCcCcCceeecCCcCeeeccCCCCCCE-----EEEEECCCCcEEEEEEeCCCCCCCCCeeEcCHHHHHHhC--CC
Confidence            344566788999999887774  456665555     999999999999999999995   689999999999994  24


Q ss_pred             CCcEEEEEEEEE
Q 032442          125 SQNQLIVNYQFV  136 (140)
Q Consensus       125 ~~G~~~V~w~~V  136 (140)
                      ..+++.|+.--|
T Consensus       160 ~~~~V~ve~i~v  171 (361)
T PRK10672        160 NNTKVRIDPIIV  171 (361)
T ss_pred             CCceEEEEEEee
Confidence            456666665433

>TIGR00413 rlpA rare lipoprotein A

Probab=99.26  E-value=3.5e-11  Score=95.66  Aligned_cols=86  Identities=21%  Similarity=0.186  Sum_probs=69.3

Q ss_pred             cceeecccCCCCcchhccccceeeccC--CCCCCCCccCCceEEEEeCCCCCEEEEEEeeCCC---CCCCCCCHHHHHHh
Q 032442           45 VGAYCSTRDANKPLAWRRKYGWTAFCG--PVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCS---NGGLDLDAGVFRQL  119 (140)
Q Consensus        45 ~~~~Ca~~~~~~~~a~~~~y~~~A~~~--p~~p~~~~~CGkci~Vtn~~~g~sv~v~VvD~C~---~g~lDLS~~aF~~l  119 (140)
                      +|+| +....++.++.++.|...+|..  +..|.++-     ++|||..||++|+|+|+|++|   ...||||++|+++|
T Consensus         3 ASwY-g~~f~G~~TAnGe~y~~~~~tAAHktLPlgT~-----V~VtNl~ngrsviVrVnDRGPf~~gRiIDLS~aAA~~L   76 (208)
T TIGR00413         3 ASWY-GPKFHGRKTANGEVYNMKALTAAHKTLPFNTY-----VKVTNLHNNRSVIVRINDRGPFSDDRIIDLSHAAAREI   76 (208)
T ss_pred             EeEe-CCCCCCCcCCCCeecCCCccccccccCCCCCE-----EEEEECCCCCEEEEEEeCCCCCCCCCEEECCHHHHHHc
Confidence            3444 4445667778888888777743  55665554     999999999999999999996   58999999999999


Q ss_pred             hCCCCCCcEEEEEEEEEec
Q 032442          120 VGRDNSQNQLIVNYQFVNC  138 (140)
Q Consensus       120 ~g~~~~~G~~~V~w~~V~C  138 (140)
                      .  ....|+.+|+.+.+..
T Consensus        77 g--~~~~G~a~V~vevl~~   93 (208)
T TIGR00413        77 G--LISRGVGQVRIEVLHV   93 (208)
T ss_pred             C--CCcCceEEEEEEEEec
Confidence            4  4899999999998864

This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.

>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]

Probab=98.73  E-value=4.5e-08  Score=76.72  Aligned_cols=73  Identities=25%  Similarity=0.318  Sum_probs=57.3

Q ss_pred             ccceeeccCCCCC---CCCccCCceEEEEeCCCCCEEEEEEeeCCC---CCCCCCCHHHHHHhhCCCCCCcEEEEEEEEE
Q 032442           63 KYGWTAFCGPVGP---RGQAACGKCLRVTNRGTGAQVTVRIVDQCS---NGGLDLDAGVFRQLVGRDNSQNQLIVNYQFV  136 (140)
Q Consensus        63 ~y~~~A~~~p~~p---~~~~~CGkci~Vtn~~~g~sv~v~VvD~C~---~g~lDLS~~aF~~l~g~~~~~G~~~V~w~~V  136 (140)
                      .-..+|++-.+..   -..+.-|..+||..  .....+|.|+|.-|   .|.|||||.||.+|.  ++.+|||+|.|+.|
T Consensus        55 d~eITAlNPaqlNlGGipAAmAGaYLrVqG--PKG~TTVYVTDlYPegasGaLDLSpNAFakIG--nm~qGrIpvqWrvv  130 (232)
T COG4305          55 DMEITALNPAQLNLGGIPAAMAGAYLRVQG--PKGKTTVYVTDLYPEGASGALDLSPNAFAKIG--NMKQGRIPVQWRVV  130 (232)
T ss_pred             cceeeecCHHHcccCCchhhhccceEEEEC--CCCceEEEEecccccccccccccChHHHhhhc--chhcCccceeEEEe
Confidence            3356787643321   23467899999996  45677899999985   699999999999994  59999999999999


Q ss_pred             ecC
Q 032442          137 NCG  139 (140)
Q Consensus       137 ~C~  139 (140)
                      +-|
T Consensus       131 ~aP  133 (232)
T COG4305         131 KAP  133 (232)
T ss_pred             ccc
Confidence            765

>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels

Probab=91.77  E-value=0.2  Score=33.56  Aligned_cols=33  Identities=33%  Similarity=0.396  Sum_probs=24.5

Q ss_pred             CCchhHHHHHHHHHHHHhhhhcCCcceEEEeecCCCCC
Q 032442            1 MGKLSLCALLFLCSLAIAAAQSASNVRATSHSYNPEQH   38 (140)
Q Consensus         1 m~~~~~~~~~~~~~~~~~~a~~~~~~~~tY~~y~p~~~   38 (140)
                      |+++||-+|+.+.|+.+.+-||..+     .+|.|.++
T Consensus         1 mnn~Si~VLlaLvLIg~fAVqSdag-----~~y~p~y~   33 (71)
T PF04202_consen    1 MNNLSIAVLLALVLIGSFAVQSDAG-----YYYYPGYN   33 (71)
T ss_pred             CCchhHHHHHHHHHHhhheeeecCc-----cccCCCCC
Confidence            8999999888777777777787775     23577754

>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3

Probab=88.55  E-value=0.23  Score=39.72  Aligned_cols=49  Identities=22%  Similarity=0.440  Sum_probs=30.7

Q ss_pred             ccceeeccCCCCCCCCccCCceEEEEeCC---CCCEEEEEEeeCC---CCCCCCCC
Q 032442           63 KYGWTAFCGPVGPRGQAACGKCLRVTNRG---TGAQVTVRIVDQC---SNGGLDLD  112 (140)
Q Consensus        63 ~y~~~A~~~p~~p~~~~~CGkci~Vtn~~---~g~sv~v~VvD~C---~~g~lDLS  112 (140)
                      .|++.|..-... .....|++|+++|-+.   .||+.+|+|...-   ..++|||-
T Consensus        67 ayGfaA~~~~G~-~e~~~Cc~Cy~LtFt~g~l~GKkmiVQ~tNtG~dlg~n~FDl~  121 (201)
T PF02015_consen   67 AYGFAAASITGG-SESSWCCACYELTFTSGPLKGKKMIVQVTNTGGDLGSNQFDLA  121 (201)
T ss_dssp             EEEEEEEE-TT---HHHHTT-EEEEEE-SSTTTT-EEEEEEEEE-TTTTTTEEEEE
T ss_pred             eeeeeeeeecCC-CCCCcccceEEEEEcCCCcCCCEeEEEecccCCCCCCCeEEEE
Confidence            467777642111 2457899999998764   5899999999886   35677765

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.

>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II)

Probab=87.02  E-value=0.28  Score=26.73  Aligned_cols=18  Identities=39%  Similarity=0.381  Sum_probs=11.0

Q ss_pred             CchhHHHHHHHHHHHHhhh
Q 032442            2 GKLSLCALLFLCSLAIAAA   20 (140)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~a   20 (140)
                      ||+ ++.++.+.+|++||.
T Consensus         8 Kki-l~~l~a~~~LagCss   25 (25)
T PF08139_consen    8 KKI-LFPLLALFMLAGCSS   25 (25)
T ss_pred             HHH-HHHHHHHHHHhhccC
Confidence            454 555555566888863

The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	140
1bw3_A	125	Three-Dimensional Structure In Solution Of Barwin,		1e-39

>pdb|1BW3|A Chain A, Three-Dimensional Structure In Solution Of Barwin, A Protein From Barley Seed Length = 125

Iteration: 1
 Score =  158 bits (399), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 82/125 (65%), Positives = 94/125 (75%), Gaps = 5/125 (4%)
Query: 21  QSASNVRATSHSYNPEQHGWDLNA--VGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQ 78
           + A++VRAT H Y P Q+ WDL A  V AYC+T DA+KPL+WR KYGWTAFCGP GPRGQ
Sbjct: 1   EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQ 60
Query: 79  AACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLD-AGVFRQLV--GRDNSQNQLIVNYQF 135
           AACGKCLRVTN  TGAQ+T RIVDQC+NGGLDLD   VF ++   G    Q  L VNYQF
Sbjct: 61  AACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQF 120
Query: 136 VNCGD 140
           V+C D
Sbjct: 121 VDCRD 125

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	140
1bw3_A	125	Barwin, basic barley SEED protein; lectin; NMR {Ho	3e-50
3d30_A	208	YOAJ, expansin like protein; peptidoglycan associa	1e-08

>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A Length = 125

 Score =  155 bits (393), Expect = 3e-50
 Identities = 82/125 (65%), Positives = 94/125 (75%), Gaps = 5/125 (4%)

Query: 21  QSASNVRATSHSYNPEQHGWDLN--AVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQ 78
           + A++VRAT H Y P Q+ WDL   AV AYC+T DA+KPL+WR KYGWTAFCGP GPRGQ
Sbjct: 1   EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQ 60

Query: 79  AACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLD-AGVFRQL--VGRDNSQNQLIVNYQF 135
           AACGKCLRVTN  TGAQ+T RIVDQC+NGGLDLD   VF ++   G    Q  L VNYQF
Sbjct: 61  AACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQF 120

Query: 136 VNCGD 140
           V+C D
Sbjct: 121 VDCRD 125

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 74  GPRGQAACGKCLRVTNRGTGAQVTVRIVDQC---SNGGLDLDAGVFRQLVGRDNSQNQLI 130
           G    A  G  L V   G   + TV + D     + G LDL    FR++        ++ 
Sbjct: 45  GGVKAALAGSYLEVE--GPKGKTTVYVTDLYPEGARGALDLSPNAFRKIGNMK--DGKIN 100

Query: 131 VNYQFVNCG 139
           + ++ V   
Sbjct: 101 IKWRVVKAP 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	140
1bw3_A	125	Barwin, basic barley SEED protein; lectin; NMR {Ho	100.0
3d30_A	208	YOAJ, expansin like protein; peptidoglycan associa	99.76
2hcz_X	245	Beta-expansin 1A; domain 1 is A beta barrel and do	99.72
1n10_A	241	PHL P I, pollen allergen PHL P 1; plant allergen,	99.69
3m3g_A	120	EPL1 protein; fungal, plant defense, fungus, polys	99.69
2kqa_A	129	Cerato-platanin; elicitor, secreted, toxin; NMR {C	99.68
4avr_A	95	PA4485; unknown function, GRAM-negative bacteria,	99.67
3suj_A	127	Cerato-platanin 1; double PSI beta barrel, unknown	99.64
3suk_A	125	Cerato-platanin-like protein; double PSI beta barr	99.64
3sul_A	122	Cerato-platanin-like protein; double PSI beta barr	99.62
3sum_A	136	Cerato-platanin-like protein; double PSI beta barr	99.53
1wc2_A	181	Endoglucanase; hydrolase, cellulase, cellulose, do	99.36
2eng_A	210	Endoglucanase V; cellulose degradation, hydrolase	92.18

>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A

Probab=100.00  E-value=2.1e-47  Score=280.70  Aligned_cols=120  Identities=68%  Similarity=1.213  Sum_probs=113.9

Q ss_pred             hcCCcceEEEeecCCCCCCCCCcc--cceeecccCCCCcchhccccceeeccCCCCCCCCccCCceEEEEeCCCCCEEEE
Q 032442           21 QSASNVRATSHSYNPEQHGWDLNA--VGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTV   98 (140)
Q Consensus        21 ~~~~~~~~tY~~y~p~~~~~~~~~--~~~~Ca~~~~~~~~a~~~~y~~~A~~~p~~p~~~~~CGkci~Vtn~~~g~sv~v   98 (140)
                      |++++||+|||||+|++++|||+.  .++||++||++++++|+++|+|+||++|.+|++++.||+|++|||+.||++|+|
T Consensus         1 ~~~~~~~~ty~~y~~~~~~~~~~~~~~s~~C~t~da~~~~~~~~~y~wtA~~g~~gp~~g~~CG~cv~Vtn~~nGksV~V   80 (125)
T 1bw3_A            1 EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITA   80 (125)
T ss_dssp             CEEEEEEEECCCSSCGGGTTCTTSTTTCCTTHHHHTTSCHHHHHHSCCEESCSTTCCCSGGGTTCEEEEEETTTTEEEEE
T ss_pred             CCccceEEEEEEecCCCcCcccccceeeEeeecccCCCceeEecCCCceEeccCCCCCCCcccCCEEEeEeCCCCCEEEE
Confidence            678899999999999999999998  999999999999999999999999999999999999999999999989999999


Q ss_pred             EEeeCCCCCCCCCC-HHHHHHhhCC--CCCCcEEEEEEEEEecCC
Q 032442           99 RIVDQCSNGGLDLD-AGVFRQLVGR--DNSQNQLIVNYQFVNCGD  140 (140)
Q Consensus        99 ~VvD~C~~g~lDLS-~~aF~~l~g~--~~~~G~~~V~w~~V~C~~  140 (140)
                      +|+|+||.++|||| ++||++|++.  +++.|+++|+|+||+|+|
T Consensus        81 ~VvD~CP~ggLDLS~~~AF~~Ia~~g~G~~~G~i~V~w~~V~C~~  125 (125)
T 1bw3_A           81 RIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD  125 (125)
T ss_dssp             EEEECCSSSSCCSCSSSSHHHHCSSCHHHHHSEEEEEEEEECCCC
T ss_pred             EEEEeCCCCCCCCCCHHHHHHHhccCCcccCcEEEEEEEEEeCCC
Confidence            99999999999999 9999999531  167999999999999997

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A

Probab=99.76  E-value=5e-19  Score=139.11  Aligned_cols=96  Identities=21%  Similarity=0.222  Sum_probs=70.2

Q ss_pred             cceEEEeecCCCCCCCCCcccceeecccCCCCcchhccccceeeccCCCCCCC---CccCCceEEEEeCCCCCEEEEEEe
Q 032442           25 NVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRG---QAACGKCLRVTNRGTGAQVTVRIV  101 (140)
Q Consensus        25 ~~~~tY~~y~p~~~~~~~~~~~~~Ca~~~~~~~~a~~~~y~~~A~~~p~~p~~---~~~CGkci~Vtn~~~g~sv~v~Vv  101 (140)
                      ..++||  |.+..       ..++|+....+.      ....+|++.+.|.++   ++.||+|++|+++  +++|+|+|+
T Consensus         8 ~G~aT~--Y~~g~-------~~GACG~~~~~~------~~~~aAls~~~f~~G~~~~~~CG~c~~v~~~--~gsv~V~v~   70 (208)
T 3d30_A            8 EGYATY--TGSGY-------SGGAFLLDPIPS------DMEITAINPADLNYGGVKAALAGSYLEVEGP--KGKTTVYVT   70 (208)
T ss_dssp             EEEEEE--CSTTS-------SSCTTCCCCCCT------TCCEEEECHHHHTGGGCTTTTTTCEEEEEET--TEEEEEEEE
T ss_pred             EEEEEE--cCCCC-------CCCcCCCCCCCC------CCEEEEeCHHHhCCCCcCccccCCEEEEEeC--CCcEEEEEE
Confidence            346777  66643       246787542211      112355554444222   3789999999984  569999999


Q ss_pred             eCCC---CCCCCCCHHHHHHhhCCCCCCcEEEEEEEEEecC
Q 032442          102 DQCS---NGGLDLDAGVFRQLVGRDNSQNQLIVNYQFVNCG  139 (140)
Q Consensus       102 D~C~---~g~lDLS~~aF~~l~g~~~~~G~~~V~w~~V~C~  139 (140)
                      |+||   .+|||||+.||++|+.  ++.|+++|+|++|+|+
T Consensus        71 D~CP~C~~~~~DLS~~aF~~la~--~~~G~i~v~~~~V~C~  109 (208)
T 3d30_A           71 DLYPEGARGALDLSPNAFRKIGN--MKDGKINIKWRVVKAP  109 (208)
T ss_dssp             EECTTCCTTCEEECHHHHHHHSC--GGGSSEEEEEEEECCC
T ss_pred             ECCCCCCCCeEECCHHHHHHhcc--cCCCEEEEEEEEeCCC
Confidence            9994   6999999999999964  7999999999999997

>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}

Probab=99.72  E-value=6e-18  Score=136.11  Aligned_cols=106  Identities=25%  Similarity=0.358  Sum_probs=75.7

Q ss_pred             cceEEEeecCCCCCCCCCcc--cceeecccCCCCcchhccccceeeccCCCCCCCCccCCceEEEEeCC----CCCEEEE
Q 032442           25 NVRATSHSYNPEQHGWDLNA--VGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRG----TGAQVTV   98 (140)
Q Consensus        25 ~~~~tY~~y~p~~~~~~~~~--~~~~Ca~~~~~~~~a~~~~y~~~A~~~p~~p~~~~~CGkci~Vtn~~----~g~sv~v   98 (140)
                      ..++||  |.+...   .+.  .+++|+..+..+.   ...-.-+|++.+.| +++..||+|++|++..    .+++|+|
T Consensus        21 ~g~AT~--Yg~~~~---~gt~~~gGACGyg~~~~~---p~~~~~aAls~~lf-~~G~~CG~Cy~V~c~~~~~C~~~sv~V   91 (245)
T 2hcz_X           21 TARATW--YGQPNG---AGAPDNGGACGIKNVNLP---PYSGMTACGNVPIF-KDGKGCGSCYEVRCKEKPECSGNPVTV   91 (245)
T ss_dssp             EEEEEE--CSCTTS---CSSTTSCCTTCCCCTTST---TTTTCEEEECHHHH-GGGTSTTCEEEEECCSSSSBCSSCEEE
T ss_pred             eeEEEE--eCCCCC---CCcCCCCccCCCCCCCcC---CCCCEEEEeCHHHc-CCchhcCCeEEEEeCCCCccCCCCEEE
Confidence            346776  665531   122  3578987653211   01112356655555 6789999999999864    3789999


Q ss_pred             EEeeCC----CCCCCCCCHHHHHHhhCCC-----CCCcEEEEEEEEEecC
Q 032442           99 RIVDQC----SNGGLDLDAGVFRQLVGRD-----NSQNQLIVNYQFVNCG  139 (140)
Q Consensus        99 ~VvD~C----~~g~lDLS~~aF~~l~g~~-----~~~G~~~V~w~~V~C~  139 (140)
                      +|+|+|    +.+|||||+.||.+|+..+     +..|+++|+|++|+|+
T Consensus        92 ~VtD~C~C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~  141 (245)
T 2hcz_X           92 YITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCK  141 (245)
T ss_dssp             EEEEECCCTTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEEEEEEEECCC
T ss_pred             EEEeccCCCCCCccEEcCHHHHHHHhccccccccccCCEEEEEEEEEecC
Confidence            999998    3589999999999996311     6899999999999996

>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3

Probab=99.69  E-value=6e-18  Score=135.85  Aligned_cols=105  Identities=22%  Similarity=0.412  Sum_probs=73.0

Q ss_pred             cceEEEeecCCCCCCCCCcc--cceeecccCCCC-cchhccccceeeccCCCCCCCCccCCceEEEEeCCC----CCEEE
Q 032442           25 NVRATSHSYNPEQHGWDLNA--VGAYCSTRDANK-PLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGT----GAQVT   97 (140)
Q Consensus        25 ~~~~tY~~y~p~~~~~~~~~--~~~~Ca~~~~~~-~~a~~~~y~~~A~~~p~~p~~~~~CGkci~Vtn~~~----g~sv~   97 (140)
                      ..++||  |.+...   .++  .+++|+..+-.. +.    .-..+|++.+.| +++..||+|++|+++.+    +++|+
T Consensus        21 ~g~AT~--Yg~~~~---~gt~~~gGACGyg~~~~~~~----g~~~aAls~~lf-~~G~~CG~CyeV~c~~~~~C~~~~v~   90 (241)
T 1n10_A           21 DAKSTW--YGKPTG---AGPKDNGGACGYKDVDKPPF----SGMTGCGNTPIF-KSGRGCGSCFEIKCTKPEACSGEPVV   90 (241)
T ss_dssp             EEEEEE--EC-------------CCTTCCCCTTSTTT----TTCEEEECHHHH-GGGTTSSCEEEEEECSSTTBCSCCEE
T ss_pred             eeEEEE--eCCCCC---CCcCCCCeeCCCCCcCcCCC----CcEEEEeCHHHc-cCcccCCCeEEEEeCCCCccCCCCEE
Confidence            346777  665531   122  367898664221 21    112355555555 67899999999999753    78999


Q ss_pred             EEEeeCC----CCCCCCCCHHHHHHhhCCC-----CCCcEEEEEEEEEecC
Q 032442           98 VRIVDQC----SNGGLDLDAGVFRQLVGRD-----NSQNQLIVNYQFVNCG  139 (140)
Q Consensus        98 v~VvD~C----~~g~lDLS~~aF~~l~g~~-----~~~G~~~V~w~~V~C~  139 (140)
                      |+|+|+|    +..|||||+.||.+|+..+     +..|+++|+|++|+|+
T Consensus        91 V~VtD~C~C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~  141 (241)
T 1n10_A           91 VHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCK  141 (241)
T ss_dssp             EEEEEECSSCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCC
T ss_pred             EEEeEecCCCCCCcceecCHHHHHHhhccCcccccccCCEEEEEEEEEeCC
Confidence            9999998    3589999999999996311     5889999999999996

>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens}

Probab=99.69  E-value=1.8e-17  Score=120.75  Aligned_cols=100  Identities=18%  Similarity=0.346  Sum_probs=88.5

Q ss_pred             EEEeecCCCCCCCCCcccceeecccCCCCcchhccccceeeccC-CCCC----------CCCccCCceEEEEeCCCCCEE
Q 032442           28 ATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCG-PVGP----------RGQAACGKCLRVTNRGTGAQV   96 (140)
Q Consensus        28 ~tY~~y~p~~~~~~~~~~~~~Ca~~~~~~~~a~~~~y~~~A~~~-p~~p----------~~~~~CGkci~Vtn~~~g~sv   96 (140)
                      ++|   ||.+++-+.+..+.+|++..++..    .||+|+.+.. |.||          |+++.||.|++|++  +|++|
T Consensus         3 v~y---d~~YD~~~~sl~~vaCsdg~nGL~----tk~g~~t~g~lp~FP~IGg~~~i~gwns~~CGtC~~lty--~g~si   73 (120)
T 3m3g_A            3 VSY---DTGYDNGSRSLNDVSCSDGPNGLE----TRYHWSTQGQIPRFPYIGGAAAVAGWNSASCGTCWKLQY--SGHTI   73 (120)
T ss_dssp             EEE---CGGGGCTTCBGGGSSSSSSTTSHH----HHHCCCBGGGSTTTTSEEEETTCCSTTCTTTTCEEEEEE--TTEEE
T ss_pred             eEe---cCCCCCCCCccceEEecCCCCccc----cccCCcccccCCCCCccccccccccCCCCCCCceEEEEE--CCeEE
Confidence            456   999999899999999999998876    7899999977 7777          69999999999996  79999


Q ss_pred             EEEEeeCCCCCCCCCCHHHHHHhh-CCCCCCcEEEEEEEEEe
Q 032442           97 TVRIVDQCSNGGLDLDAGVFRQLV-GRDNSQNQLIVNYQFVN  137 (140)
Q Consensus        97 ~v~VvD~C~~g~lDLS~~aF~~l~-g~~~~~G~~~V~w~~V~  137 (140)
                      .+..+|.- .++|++|.+||+.|. |+....|+|++++++|+
T Consensus        74 ~vlaID~a-~~Gfnis~~A~n~LT~G~a~~lG~V~a~~~~V~  114 (120)
T 3m3g_A           74 YVLAVDHA-ASGFNIALDAMNALTGGQAVQLGRVSATATQVP  114 (120)
T ss_dssp             EEEEEEEC-SSSEEECHHHHHHHHTSCHHHHCEEECEEEEEC
T ss_pred             EEEEEecC-CCceeecHHHHHHhhCCcceeeeeEeEEEEEcC
Confidence            99999998 667999999999995 44456699999999986

>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani}

Probab=99.68  E-value=1e-16  Score=117.83  Aligned_cols=99  Identities=28%  Similarity=0.486  Sum_probs=87.9

Q ss_pred             ceEEEeecCCCCCCCCCcccceeecccCCCCcchhccccceeeccC-CCCC----------CCCccCCceEEEEeCCCCC
Q 032442           26 VRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCG-PVGP----------RGQAACGKCLRVTNRGTGA   94 (140)
Q Consensus        26 ~~~tY~~y~p~~~~~~~~~~~~~Ca~~~~~~~~a~~~~y~~~A~~~-p~~p----------~~~~~CGkci~Vtn~~~g~   94 (140)
                      +.++|   |+.|+ -+.+....+|++..++..    .|  |+.+.. |.||          |+++.||+|++|+++ +|+
T Consensus        10 ~~vsy---D~~YD-~~~sl~~vaCSdG~nGL~----tk--y~t~g~lp~FP~IGga~~iagWNS~~CGtC~~lty~-ng~   78 (129)
T 2kqa_A           10 VSISY---DPIYA-ADLSMGSVACSNGDHGLM----AQ--YPTLGEVPGFPNVGGIPDIAGWDSPSCGTCWKVTIP-NGN   78 (129)
T ss_dssp             CCEEE---CSSCS-TTCBGGGSSCCSTTTCST----TT--CSBSSSSSCSSSEEEETTCCSTTCTTCSCEEEEEET-TTE
T ss_pred             EEEEe---cCCcC-CCCccceEEecCCCCCce----ec--CcccccCCCCCeeccchhhccCCCCCCCceEEEEEc-CCC
Confidence            56777   99999 889999999999999875    55  788876 7777          789999999999986 899


Q ss_pred             EEEEEEeeCCCCCCCCCCHHHHHHhhCCCCCCcEE-EEEEEEEe
Q 032442           95 QVTVRIVDQCSNGGLDLDAGVFRQLVGRDNSQNQL-IVNYQFVN  137 (140)
Q Consensus        95 sv~v~VvD~C~~g~lDLS~~aF~~l~g~~~~~G~~-~V~w~~V~  137 (140)
                      +|.+..+|.- .++|+++++||+.|.++ ...||| +++|++|+
T Consensus        79 sI~vlaID~A-~~gFnIs~~Amn~LT~G-~~lG~V~~a~~~qV~  120 (129)
T 2kqa_A           79 SIFIRGVDSG-RGGFNVNPTAFTKLVGS-TEAGRVDNVNYVQVD  120 (129)
T ss_dssp             EEEEEEEEEC-SSSEEECHHHHHHHHSS-SSSCCBCSCEEEECC
T ss_pred             EEEEEEEccC-CCceeehHHHHHHhcCC-cccCcEeEEEEEEcC
Confidence            9999999999 57899999999999764 899999 99999986

>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01}

Probab=99.67  E-value=6.3e-17  Score=113.63  Aligned_cols=80  Identities=21%  Similarity=0.157  Sum_probs=63.4

Q ss_pred             CCCCcchhccccceeeccCCCCCCCCccCCceEEEEeCCCCCEEEEEEeeCCC---CCCCCCCHHHHHHhhCCCCCCcEE
Q 032442           53 DANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTVRIVDQCS---NGGLDLDAGVFRQLVGRDNSQNQL  129 (140)
Q Consensus        53 ~~~~~~a~~~~y~~~A~~~p~~p~~~~~CGkci~Vtn~~~g~sv~v~VvD~C~---~g~lDLS~~aF~~l~g~~~~~G~~  129 (140)
                      ..++..|.++.|...+|..   .+.+-.||..++|||..||++|+|+|+|+||   .+.||||++||++|.  ..+.|+.
T Consensus        13 f~G~~TA~Ge~~~~~~~tA---AH~tlP~gt~vrVtNl~nGksVvVrVnDRGP~~~griIDLS~aAa~~Lg--~~~~G~~   87 (95)
T 4avr_A           13 HAGLRTASGERYNPNAMTA---AHRTLPFGARVRVTNLDNRRSVVVRINDRGPFRRGRIIDVSRKAAEGLG--MIRSGVA   87 (95)
T ss_dssp             GTTSBCTTSCBCCTTSCEE---ECSSSCTTCEEEEEETTTCCEEEEEEEECCCCSTTEEEEECHHHHHHHT--CTTTSCE
T ss_pred             cCCCCCCCccCcCCCCCEE---EcCCCCCCcEEEEEECCCCcEEEEEEccCCCCCCCCEEEeCHHHHHHhC--CcCCCEE
Confidence            4456667777776665532   1223348888999999999999999999996   578999999999995  4889999


Q ss_pred             EEEEEEEe
Q 032442          130 IVNYQFVN  137 (140)
Q Consensus       130 ~V~w~~V~  137 (140)
                      +|+|++++
T Consensus        88 ~V~ve~~~   95 (95)
T 4avr_A           88 PVRIESLD   95 (95)
T ss_dssp             EEEEEEC-
T ss_pred             EEEEEEeC
Confidence            99999874

>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}

Probab=99.64  E-value=2.6e-16  Score=115.56  Aligned_cols=100  Identities=17%  Similarity=0.314  Sum_probs=85.4

Q ss_pred             ceEEEeecCCCCCCCCCcccceeecccCCCCcchhccccceeeccC-CCCC----------CCCccCCceEEEEeCCCC-
Q 032442           26 VRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCG-PVGP----------RGQAACGKCLRVTNRGTG-   93 (140)
Q Consensus        26 ~~~tY~~y~p~~~~~~~~~~~~~Ca~~~~~~~~a~~~~y~~~A~~~-p~~p----------~~~~~CGkci~Vtn~~~g-   93 (140)
                      +.++|   ||.|++-+.++.+.+|++..++..    .|  |..+.. |.||          |+++.||.|++|++  +| 
T Consensus         3 ~~vsy---d~~YD~~~~sl~~vaCSdg~nGL~----tk--y~t~g~lp~FP~IGg~~~i~gwns~~CGtC~~lty--~g~   71 (127)
T 3suj_A            3 VKLSY---DEAYDNPSSSLLSVTCSDGENGLY----PK--YRTFGDLPGFPCIGGSSDIAGYNSPNCGSCYQLTY--SSA   71 (127)
T ss_dssp             EEEEE---CGGGGCTTSBGGGSSSCSSTTCCT----TT--SCBGGGSTTTTSEEEETTCCSTTCTTTTCEEEEEE--CCS
T ss_pred             EEEEe---cCCCCCCCCeeeeEEecCCCCcce----ec--cccccccCCCCeeccccccccCCCCCCCceEEEEE--CCC
Confidence            45666   999999999999999999999875    45  667765 7676          68999999999997  46 


Q ss_pred             ----CEEEEEEeeCCCCCCCCCCHHHHHHhh-CCCCCCcEEEEEEEEEe
Q 032442           94 ----AQVTVRIVDQCSNGGLDLDAGVFRQLV-GRDNSQNQLIVNYQFVN  137 (140)
Q Consensus        94 ----~sv~v~VvD~C~~g~lDLS~~aF~~l~-g~~~~~G~~~V~w~~V~  137 (140)
                          ++|.+..+|.- .++|||+.+||+.|. |+....|+|+++|++|+
T Consensus        72 ~~~~~si~vlaID~a-~~Gfnis~~Amn~LT~g~a~~lG~V~~~~~~V~  119 (127)
T 3suj_A           72 HTTPKSIYMVAIDRS-AEGFTASKQAMDDLTNKRAEELGTVNVDVRKVD  119 (127)
T ss_dssp             SSCCEEEEEEEEEEC-SSSEEECHHHHHHHHTSCHHHHSSEEEEEEEEC
T ss_pred             CCcceEEEEEEEecC-CCceeecHHHHHHhcCCccccceeEEEEEEEeC
Confidence                99999999998 667999999999995 54566799999999986

>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}

Probab=99.64  E-value=2.4e-16  Score=115.48  Aligned_cols=100  Identities=19%  Similarity=0.320  Sum_probs=85.3

Q ss_pred             ceEEEeecCCCCCCCCCcccceeecccCCCCcchhccccceeeccC-CCCC----------CCCccCCceEEEEeCCCC-
Q 032442           26 VRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCG-PVGP----------RGQAACGKCLRVTNRGTG-   93 (140)
Q Consensus        26 ~~~tY~~y~p~~~~~~~~~~~~~Ca~~~~~~~~a~~~~y~~~A~~~-p~~p----------~~~~~CGkci~Vtn~~~g-   93 (140)
                      +.++|   ||.|++-+.+..+..|++..++..    .|  |..+.. |.||          |+++.||.|++|++  +| 
T Consensus         4 ~~vsy---d~~YD~~~~sl~~vaCSdg~nGL~----tk--y~t~g~lp~FP~IGg~~~i~gwnS~~CGtC~~lty--~g~   72 (125)
T 3suk_A            4 VQLRF---DNTYDNASGSMNTVACSTGANGLS----QR--FPTFGSVPTFPHIGASSDIGGFNSPACGNCYTISF--TFQ   72 (125)
T ss_dssp             EEEEE---CGGGGCTTCBGGGSSSSSSTTCCT----TT--CSBGGGSTTTTSEEEETTCCSTTCTTTTCEEEEEE--EET
T ss_pred             EEEEe---cCCCCCCCCccceEEecCCCCCce----ec--cccccccCCCCeeccccccccCCCCCCCeeEEEEE--cCC
Confidence            45667   999999999999999999999875    45  666655 6666          78999999999997  56 


Q ss_pred             ---CEEEEEEeeCCCCCCCCCCHHHHHHhh-CCCCCCcEEEEEEEEEe
Q 032442           94 ---AQVTVRIVDQCSNGGLDLDAGVFRQLV-GRDNSQNQLIVNYQFVN  137 (140)
Q Consensus        94 ---~sv~v~VvD~C~~g~lDLS~~aF~~l~-g~~~~~G~~~V~w~~V~  137 (140)
                         ++|.+..+|.- .++|||+++||+.|. |+....|+|++++++|+
T Consensus        73 ~~~~si~vlaID~a-~~Gfnis~~Amn~LT~G~a~~lG~V~~~~~~V~  119 (125)
T 3suk_A           73 GVTRSINLVAIDHA-GNGFNVAQAAMDELTNGNAVALGTIDVQSQQVA  119 (125)
T ss_dssp             TEEEEEEEEEEEEC-SSSEEECHHHHHHHHTSCHHHHCEEEEEEEEEC
T ss_pred             CcceEEEEEEEecC-CCceeecHHHHHHhcCCcccccceEeEEEEEcC
Confidence               99999999998 667999999999995 44566799999999986

>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa}

Probab=99.62  E-value=7.2e-16  Score=112.54  Aligned_cols=103  Identities=23%  Similarity=0.397  Sum_probs=84.9

Q ss_pred             ceEEEeecCCCCCCCCCcccceeecccCCCCcchhccccceeeccC-CC--------CCCCCccCCceEEEEeCCCCCEE
Q 032442           26 VRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCG-PV--------GPRGQAACGKCLRVTNRGTGAQV   96 (140)
Q Consensus        26 ~~~tY~~y~p~~~~~~~~~~~~~Ca~~~~~~~~a~~~~y~~~A~~~-p~--------~p~~~~~CGkci~Vtn~~~g~sv   96 (140)
                      +.++|   ||.|++-+.++.+..|++..++..    .| +|+.+.. |.        -.|+++.||.|++|++..+|++|
T Consensus         4 ~~vsy---d~~YD~~~~sl~~vaCSdg~nGl~----tk-g~~t~g~lp~FIGg~~~V~gwnS~~CGtC~~lty~~~g~si   75 (122)
T 3sul_A            4 VQLQY---DPVYDNADQSFGTVACSDGPNGML----TK-GYSTFGSVPSYVGAVDTITGWNSESCGTCYQITWSGTGKTI   75 (122)
T ss_dssp             EEEEE---CGGGGCTTCBGGGSSSSSSTTSTT----TT-TCCBGGGSSSEEEEETTCCSTTCTTTTCEEEEEETTTTEEE
T ss_pred             EEEEe---cCCCCCCCCccceEEecCCCCccc----cC-CCccccccccccccccccccCCCCCCCceEEEEEcCCCcEE
Confidence            45666   999999999999999999988865    45 5666633 22        11688999999999986569999


Q ss_pred             EEEEeeCCCCCCCCCCHHHHHHhh-CCCCCCcEEEEEEEEEe
Q 032442           97 TVRIVDQCSNGGLDLDAGVFRQLV-GRDNSQNQLIVNYQFVN  137 (140)
Q Consensus        97 ~v~VvD~C~~g~lDLS~~aF~~l~-g~~~~~G~~~V~w~~V~  137 (140)
                      .+..+|.- .++|||+.+||+.|. |+....|++++++++|+
T Consensus        76 ~vlaID~a-~~Gfnis~~Amn~LT~G~a~~lG~V~a~~~qV~  116 (122)
T 3sul_A           76 HVVGVDVA-GNGFNVGQRAMDDLTNGQAVALGNIDVTATLVD  116 (122)
T ss_dssp             EEEEEEEC-SSSEEECHHHHHHHHTSCHHHHSEEEEEEEEEC
T ss_pred             EEEEEecC-CCceeehHHHHHHhcCCcceecceEeEEEEEcC
Confidence            99999998 667999999999995 54566799999999996

>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa}

Probab=99.53  E-value=7.8e-15  Score=108.47  Aligned_cols=99  Identities=17%  Similarity=0.160  Sum_probs=83.4

Q ss_pred             cceEEEeecCCCCCCCCCcccceeecccCCCCcchhcccc-----ce-eeccC-CCCC------CCCccCCceEEEEeCC
Q 032442           25 NVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKY-----GW-TAFCG-PVGP------RGQAACGKCLRVTNRG   91 (140)
Q Consensus        25 ~~~~tY~~y~p~~~~~~~~~~~~~Ca~~~~~~~~a~~~~y-----~~-~A~~~-p~~p------~~~~~CGkci~Vtn~~   91 (140)
                      +|.++|   |+.+++-++++.+..|++        ...||     +| +.+.. |.||      ++++.||.|++|++  
T Consensus         2 ~v~v~y---d~~YD~~~~sls~vaCS~--------l~~ky~~~~~g~~~t~g~lp~FP~igg~~wns~~CGtCwkLtY--   68 (136)
T 3sum_A            2 NWLIKW---DDKFQNDTLSISEFKCSA--------ALAKLGPDPKHPPTKLGEVLNFPHFVAAPEAQTECGSCWKLRY--   68 (136)
T ss_dssp             CCEEEE---CGGGGCTTSBGGGSTTHH--------HHHTCSSSSSSCCSBGGGSTTTTSEEECCBTTBCTTCEEEEEE--
T ss_pred             cEEEEe---cCCCCCCCCeeeeEEHHH--------HHhhccccccCccccccccCCCCcccccccCCCCCCceEEEEE--
Confidence            677888   999999999999999998        22677     67 67765 6665      79999999999996  


Q ss_pred             CCCEEEEEEeeCCCCCC--CCCCHHHHHHhh-CC----CCCCcEEEE-EEEEEe
Q 032442           92 TGAQVTVRIVDQCSNGG--LDLDAGVFRQLV-GR----DNSQNQLIV-NYQFVN  137 (140)
Q Consensus        92 ~g~sv~v~VvD~C~~g~--lDLS~~aF~~l~-g~----~~~~G~~~V-~w~~V~  137 (140)
                      +|++|.+..+|.- .++  ||||.+||+.|. |+    +...|+|.+ +|++|+
T Consensus        69 ~G~sI~vlaID~a-~~g~~FnIs~~Amn~LT~G~~a~~a~elG~Vda~~~~qVd  121 (136)
T 3sum_A           69 KGNHAFVTVVDRV-EEANLFVGGTDLVKNLTTFNGAPEGYDWGTAQLFSAYQVD  121 (136)
T ss_dssp             TTEEEEEEEEECC-CSTTEEEECHHHHHHHTCBTTBCHHHHHSEEECSEEEEEC
T ss_pred             CCeEEEEEEEecC-CCcceEeehHHHHHHHhCCCccccceecceeeeeEEEEcC
Confidence            7999999999999 455  999999999995 33    345799999 999996

>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1

Probab=99.36  E-value=1.1e-13  Score=106.75  Aligned_cols=91  Identities=26%  Similarity=0.459  Sum_probs=63.1

Q ss_pred             ceeecccCCC--CcchhccccceeeccCCCCCCC-----CccCCceEEEEeCC-----------CCCEEEEEEeeCCC--
Q 032442           46 GAYCSTRDAN--KPLAWRRKYGWTAFCGPVGPRG-----QAACGKCLRVTNRG-----------TGAQVTVRIVDQCS--  105 (140)
Q Consensus        46 ~~~Ca~~~~~--~~~a~~~~y~~~A~~~p~~p~~-----~~~CGkci~Vtn~~-----------~g~sv~v~VvD~C~--  105 (140)
                      +++|+.....  ..+.|.-...=+|++...|-++     ++.||+|++|++..           .|++|+|+|+|.||  
T Consensus        27 gGACGyG~~~~~~l~~~gyg~~tAALStaLFn~G~~~w~G~~CG~Cyel~c~~~~c~~cg~~~~~g~SI~VtaTN~CPpn  106 (181)
T 1wc2_A           27 KGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQHCGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNI  106 (181)
T ss_dssp             CTTTTCSCSSSSBCCSSGGGSCEEEEEHHHHCTTCCSSSCTTTTCEEEEEEEEEECTTSCCCCCTTCEEEEEEEEEECSS
T ss_pred             CcccCcCcCCCCCccccCCcceeeecCHHHhCCCccccccccCCCcEEEEcCCCCcccccccCCCCCeEEEEEecCCCCC
Confidence            4677766321  2222222212244444445223     38999999999632           47899999999997  


Q ss_pred             ---------------------CCCCCCCHHHHHHhhCCCCCCcEEEEEEEEEecC
Q 032442          106 ---------------------NGGLDLDAGVFRQLVGRDNSQNQLIVNYQFVNCG  139 (140)
Q Consensus       106 ---------------------~g~lDLS~~aF~~l~g~~~~~G~~~V~w~~V~C~  139 (140)
                                           ..||||++.+ .+|+.  +..|+++|+|+.|+|+
T Consensus       107 ~~nggWCn~pp~~~~~n~~G~~~HFDLs~pa-~~Ia~--~~~GivpV~yrrV~C~  158 (181)
T 1wc2_A          107 YPNQDWCNQGSQYGGHNKYGYELHLDLENGR-SQVTG--MGWNNPETTWEVVNCD  158 (181)
T ss_dssp             TTSTTTSCCSSSSSCCCTTSCSEEEEEECTT-STTGG--GTCSSEEEEEEEECHH
T ss_pred             CCCCCccCCCcccCcccccCccccccccchH-HHhhh--hcCCCceeEEEEEeCC
Confidence                                 2499999999 78864  7889999999999994

>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A

Probab=92.18  E-value=0.066  Score=41.88  Aligned_cols=49  Identities=20%  Similarity=0.388  Sum_probs=34.0

Q ss_pred             ccceeeccCCCCCCCCccCCceEEEEeCC---CCCEEEEEEeeCC---CCCCCCCC
Q 032442           63 KYGWTAFCGPVGPRGQAACGKCLRVTNRG---TGAQVTVRIVDQC---SNGGLDLD  112 (140)
Q Consensus        63 ~y~~~A~~~p~~p~~~~~CGkci~Vtn~~---~g~sv~v~VvD~C---~~g~lDLS  112 (140)
                      .|++.|..-. +......|++|+++|-+.   .||+.+|+|+...   ..++|||.
T Consensus        69 ayGFaA~~~~-g~~e~~~Cc~C~~LtFt~~~~~GKkmiVQ~TNtG~Dl~~n~FDl~  123 (210)
T 2eng_A           69 ALGFAATSIA-GSNEAGWCCACYELTFTSGPVAGKKMVVQSTSTGGDLGSNHFDLN  123 (210)
T ss_dssp             EEEEEEEECT-TCCHHHHTTCEEEEEECSGGGTTCEEEEEEEEC-----CCEEEEE
T ss_pred             ceeeeeeecc-CCccccccceeEEEEEcCCCcCCCEEEEEEecccCCCCCCceeEe
Confidence            5677775421 123457899999999865   5899999999988   35667663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	140
d1bw3a_	125	b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [Ta	8e-65

>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 125

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Barwin
domain: Barwin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  191 bits (486), Expect = 8e-65
 Identities = 82/125 (65%), Positives = 94/125 (75%), Gaps = 5/125 (4%)

Query: 21  QSASNVRATSHSYNPEQHGWDLN--AVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQ 78
           + A++VRAT H Y P Q+ WDL   AV AYC+T DA+KPL+WR KYGWTAFCGP GPRGQ
Sbjct: 1   EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQ 60

Query: 79  AACGKCLRVTNRGTGAQVTVRIVDQCSNGGLDLD-AGVFRQL--VGRDNSQNQLIVNYQF 135
           AACGKCLRVTN  TGAQ+T RIVDQC+NGGLDLD   VF ++   G    Q  L VNYQF
Sbjct: 61  AACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQF 120

Query: 136 VNCGD 140
           V+C D
Sbjct: 121 VDCRD 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	140
d1bw3a_	125	Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}	100.0
d1n10a2	143	Pollen allergen PHL P 1 N-terminal domain {Timothy	99.68
d1wc2a1	180	Endoglucanase (CMCase) {Blue mussel (Mytilus eduli	99.58
d2enga_	210	Endoglucanase V (Eng V) {Humicola insolens [TaxId:	89.89

>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Barwin
domain: Barwin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=100.00  E-value=3.8e-49  Score=282.29  Aligned_cols=120  Identities=68%  Similarity=1.229  Sum_probs=115.0

Q ss_pred             hcCCcceEEEeecCCCCCCCCCc--ccceeecccCCCCcchhccccceeeccCCCCCCCCccCCceEEEEeCCCCCEEEE
Q 032442           21 QSASNVRATSHSYNPEQHGWDLN--AVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGTGAQVTV   98 (140)
Q Consensus        21 ~~~~~~~~tY~~y~p~~~~~~~~--~~~~~Ca~~~~~~~~a~~~~y~~~A~~~p~~p~~~~~CGkci~Vtn~~~g~sv~v   98 (140)
                      |++++||+|||||+|++++|||+  .++.||++||+++||+||+||+|+|||+|.+|.+++.||||++|||++||+++++
T Consensus         1 q~a~nVRaTYh~Ynp~~~~wdl~~~a~sayCatwDa~kpL~wr~kygWtAfCgp~gp~gq~sCGkclrvTN~atga~~~~   80 (125)
T d1bw3a_           1 EQANDVRATYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITA   80 (125)
T ss_dssp             CEEEEEEEECCCSSCGGGTTCTTSTTTCCTTHHHHTTSCHHHHHHSCCEESCSTTCCCSGGGTTCEEEEEETTTTEEEEE
T ss_pred             CCcccceeEEEeccccccCcccchhhhhhheecccCCCccccccCCCCeEEecCCCCcCcccccceEEeeecccCcEEEE
Confidence            57889999999999999999998  6789999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCCCCCCC-HHHHHHh--hCCCCCCcEEEEEEEEEecCC
Q 032442           99 RIVDQCSNGGLDLD-AGVFRQL--VGRDNSQNQLIVNYQFVNCGD  140 (140)
Q Consensus        99 ~VvD~C~~g~lDLS-~~aF~~l--~g~~~~~G~~~V~w~~V~C~~  140 (140)
                      ||||+|++|+|||+ +.+|++|  .|+++..|++.|+++||+|+|
T Consensus        81 RiVDqCsngGlDLD~~~vFn~iDtdG~G~~~Ghl~V~y~fV~C~d  125 (125)
T d1bw3a_          81 RIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD  125 (125)
T ss_dssp             EEEECCSSSSCCSCSSSSHHHHCSSCHHHHHSEEEEEEEEECCCC
T ss_pred             EEeecccCCCCccccHhhhheecCCCcccccccEEEEEEEecCCC
Confidence            99999999999999 8899999  456689999999999999987

>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=99.68  E-value=6.8e-18  Score=124.25  Aligned_cols=108  Identities=22%  Similarity=0.389  Sum_probs=72.6

Q ss_pred             cceEEEeecCCCCCCCCCcccceeecccCCCCcchhccccceeeccCCCCCCCCccCCceEEEEeCCC----CCEEEEEE
Q 032442           25 NVRATSHSYNPEQHGWDLNAVGAYCSTRDANKPLAWRRKYGWTAFCGPVGPRGQAACGKCLRVTNRGT----GAQVTVRI  100 (140)
Q Consensus        25 ~~~~tY~~y~p~~~~~~~~~~~~~Ca~~~~~~~~a~~~~y~~~A~~~p~~p~~~~~CGkci~Vtn~~~----g~sv~v~V  100 (140)
                      +.++||  |-... ..+....+++|+..+....   .....-+|++...| +++..||+|++|++..+    +++|+|+|
T Consensus        19 ~g~AT~--Yg~~~-~~~~~~~gGACGyg~~~~~---p~g~~~aAls~~l~-~~g~~CG~cyev~c~~~~~c~~~sv~V~v   91 (143)
T d1n10a2          19 DAKSTW--YGKPT-GAGPKDNGGACGYKDVDKP---PFSGMTGCGNTPIF-KSGRGCGSCFEIKCTKPEACSGEPVVVHI   91 (143)
T ss_dssp             EEEEEE--EC-----------CCTTCCCCTTST---TTTTCEEEECHHHH-GGGTTSSCEEEEEECSSTTBCSCCEEEEE
T ss_pred             eeEEeE--eCCCC-CCCCCCCcccCCCCCcccC---CCcceEEEeCHhHc-cCCCcCCcceEeEcCCCCcccCCCEEEEE
Confidence            346776  64332 1111223578987643321   01112456665566 68889999999999754    68999999


Q ss_pred             eeCCC----CCCCCCCHHHHHHhhCCC-----CCCcEEEEEEEEEecC
Q 032442          101 VDQCS----NGGLDLDAGVFRQLVGRD-----NSQNQLIVNYQFVNCG  139 (140)
Q Consensus       101 vD~C~----~g~lDLS~~aF~~l~g~~-----~~~G~~~V~w~~V~C~  139 (140)
                      +|.|+    .+|||||+.||.+|+..+     ...|+++|+|+.|+|.
T Consensus        92 td~c~~~~~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~  139 (143)
T d1n10a2          92 TDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCK  139 (143)
T ss_dssp             EEECSSCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCC
T ss_pred             EecccCCCCCccccCCHHHHhhhccccchhhheecCccceEEEEEecc
Confidence            99983    468999999999996422     2679999999999995

>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=99.58  E-value=1.1e-16  Score=121.91  Aligned_cols=59  Identities=32%  Similarity=0.596  Sum_probs=50.9

Q ss_pred             CccCCceEEEEeCC-----------CCCEEEEEEeeCCCC-----------------------CCCCCCHHHHHHhhCCC
Q 032442           78 QAACGKCLRVTNRG-----------TGAQVTVRIVDQCSN-----------------------GGLDLDAGVFRQLVGRD  123 (140)
Q Consensus        78 ~~~CGkci~Vtn~~-----------~g~sv~v~VvD~C~~-----------------------g~lDLS~~aF~~l~g~~  123 (140)
                      +..||+|++|++..           .|++|+|+|+|.||.                       .||||+ .+|.+|+.  
T Consensus        66 G~~CG~CyeV~C~~~~~~~~~~~~~~g~sV~V~iTd~CP~n~~n~gWCn~p~~~~~~n~~g~~~HFDLs-~af~~ia~--  142 (180)
T d1wc2a1          66 GQHCGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELHLDLE-NGRSQVTG--  142 (180)
T ss_dssp             CTTTTCEEEEEEEEEECTTSCCCCCTTCEEEEEEEEEECSSTTSTTTSCCSSSSSCCCTTSCSEEEEEE-CTTSTTGG--
T ss_pred             ccccCCEEEEEECCCCCCccCCCCCCCCcEEEEEEecCCCCCCCCCccCCccccccccccCcccceech-HHHHHHhh--
Confidence            68999999999642           478999999999962                       189998 59999975  


Q ss_pred             CCCcEEEEEEEEEecC
Q 032442          124 NSQNQLIVNYQFVNCG  139 (140)
Q Consensus       124 ~~~G~~~V~w~~V~C~  139 (140)
                      ...|+|+|+|+.|+|+
T Consensus       143 ~~~G~v~V~yrrV~C~  158 (180)
T d1wc2a1         143 MGWNNPETTWEVVNCD  158 (180)
T ss_dssp             GTCSSEEEEEEEECHH
T ss_pred             hcCCcceeEEEEeeCC
Confidence            7889999999999995

>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase V (Eng V)
species: Humicola insolens [TaxId: 34413]

Probab=89.89  E-value=0.07  Score=39.84  Aligned_cols=49  Identities=20%  Similarity=0.388  Sum_probs=32.6

Q ss_pred             ccceeeccCCCCCCCCccCCceEEEEeCC---CCCEEEEEEeeCC---CCCCCCCC
Q 032442           63 KYGWTAFCGPVGPRGQAACGKCLRVTNRG---TGAQVTVRIVDQC---SNGGLDLD  112 (140)
Q Consensus        63 ~y~~~A~~~p~~p~~~~~CGkci~Vtn~~---~g~sv~v~VvD~C---~~g~lDLS  112 (140)
                      .|++.|..-. +...+..|.+|+++|-+.   +||+.+|+|+..-   ..++|||.
T Consensus        69 ayGfAA~~~~-g~~e~~~Cc~Cy~LtFTs~~~~GKkMiVQ~tNTGgDlg~n~FDl~  123 (210)
T d2enga_          69 ALGFAATSIA-GSNEAGWCCACYELTFTSGPVAGKKMVVQSTSTGGDLGSNHFDLN  123 (210)
T ss_dssp             EEEEEEEECT-TCCHHHHTTCEEEEEECSGGGTTCEEEEEEEEC-----CCEEEEE
T ss_pred             eeeeeeeeec-CCCccccccccEEEEeecCCcCCCEEEEEEeccCCccCCCeeeEe
Confidence            4666665321 112456799999999763   6999999999886   34566653