Citrus Sinensis ID: 032447

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRYINSLEILLLVKCSFNLRQ
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcccccccEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccEEEEccccccEEEcccccccccccccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccEEEEEHHHcccc
Coil and Loop (DISEMBL)
meggvaqnnprtVEEVFRDFKGRRAGMIKALTTDVEEFYqqcdpekenlclygfpseqwevnlpaeevppelpepalginfardgmqdkdwLSLVAVHSDAWLLAVAFYFGarfgfdkadRYINSLEILLLVKCSFNLRQ
Flexible Loop (DISEMBL)
meggvaqnnprtveeVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRYINSLEILllvkcsfnlrq
Low Complexity Region (SEG)
MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWevnlpaeevppelpepalGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRYINSLEILLLVKCSFNLRQ
Disordered region (IsUnstruct)
***************VFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLP***********ALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRYINSLEILLLVKCSFN***
Disordered Region (DISOPRED)
**************EVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRYINSLEILLLVKCSFN***
Disordered Region (DISEMBL)
*********PRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRYINSLEILLLVKCSFNLRQ
Disordered Region (DISPRO)
**********RTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRYINSLEILLLVKCSFN*R*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRYINSLEILLLVKCSFNLRQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	140	2.2.26 [Sep-21-2011]
Q5XEM9	260	PHD finger protein ALFIN-	yes	no	0.864	0.465	0.851	1e-50
Q7XUW3	256	PHD finger protein ALFIN-	yes	no	0.864	0.472	0.712	7e-50
A2XTW9	256	PHD finger protein ALFIN-	N/A	no	0.864	0.472	0.704	5e-49
Q6YTY3	278	PHD finger protein ALFIN-	no	no	0.907	0.456	0.803	1e-48
B8B8C5	277	PHD finger protein ALFIN-	N/A	no	0.907	0.458	0.803	1e-48
Q9M2B4	250	PHD finger protein ALFIN-	no	no	0.864	0.484	0.801	3e-47
Q40359	257	PHD finger protein Alfin1	N/A	no	0.864	0.470	0.842	5e-47
Q2R837	254	PHD finger protein ALFIN-	no	no	0.921	0.507	0.773	4e-46
B8BJV8	254	PHD finger protein ALFIN-	N/A	no	0.921	0.507	0.773	4e-46
Q8LA16	252	PHD finger protein ALFIN-	no	no	0.921	0.511	0.731	3e-45

>sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana GN=AL5 PE=2 SV=1

 Score =  197 bits (501), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 103/121 (85%), Positives = 117/121 (96%)

Query: 1   MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWE 60
           MEGG A  +PRTVEEVFRDFKGRRAG+I+ALTTDVE+F+QQCDPEK+NLCLYGFP+E WE
Sbjct: 1   MEGGTAHYSPRTVEEVFRDFKGRRAGIIQALTTDVEDFFQQCDPEKQNLCLYGFPNEVWE 60

Query: 61  VNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 120
           VNLPAEEVPPELPEPALGINFARDGMQ+++WLSLVAVHSDAWLL+V+FYFG+RFGFD+AD
Sbjct: 61  VNLPAEEVPPELPEPALGINFARDGMQERNWLSLVAVHSDAWLLSVSFYFGSRFGFDRAD 120

Query: 121 R 121
           R
Sbjct: 121 R 121

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XUW3|ALFL4_ORYSJ PHD finger protein ALFIN-LIKE 4 OS=Oryza sativa subsp. japonica GN=Os04g0444900 PE=2 SV=2

 Score =  195 bits (496), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 89/125 (71%), Positives = 107/125 (85%), Gaps = 4/125 (3%)

Query: 1   MEGGVAQ----NNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPS 56
           M+GG       ++ R+ E+VF+DF GRR+G++KALT +VE+FY+QCDPEKENLCLYG P+
Sbjct: 1   MDGGYGSVTIVHDARSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPN 60

Query: 57  EQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGF 116
             W V LPA+EVPPELPEPALGINFARDGMQ+KDWLSL+AVHSD+WLL+VAFYFGARFGF
Sbjct: 61  GTWAVTLPADEVPPELPEPALGINFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGARFGF 120

Query: 117 DKADR 121
           DK  R
Sbjct: 121 DKKAR 125

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2XTW9|ALFL4_ORYSI PHD finger protein ALFIN-LIKE 4 OS=Oryza sativa subsp. indica GN=OsI_16049 PE=3 SV=1

 Score =  192 bits (488), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 88/125 (70%), Positives = 106/125 (84%), Gaps = 4/125 (3%)

Query: 1   MEGGVAQ----NNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPS 56
           M+GG       ++ R+ E+VF+DF GRR+G++KALT +VE+FY+QCDPEKENLCLYG P+
Sbjct: 1   MDGGYGSVTIVHDARSPEDVFQDFCGRRSGIVKALTIEVEKFYKQCDPEKENLCLYGLPN 60

Query: 57  EQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGF 116
             W V LPA+EVPPELPEPALG NFARDGMQ+KDWLSL+AVHSD+WLL+VAFYFGARFGF
Sbjct: 61  GTWAVTLPADEVPPELPEPALGHNFARDGMQEKDWLSLIAVHSDSWLLSVAFYFGARFGF 120

Query: 117 DKADR 121
           DK  R
Sbjct: 121 DKKAR 125

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q6YTY3|ALFL9_ORYSJ PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. japonica GN=Os07g0608400 PE=2 SV=1

 Score =  191 bits (485), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 106/132 (80%), Positives = 117/132 (88%), Gaps = 5/132 (3%)

Query: 6   AQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPA 65
           AQ NPRTVEEVFRDFKGRRAG+++ALT DVE+F++QCDPEKENLCLYGFP+E WEVNLPA
Sbjct: 3   AQYNPRTVEEVFRDFKGRRAGLVRALTADVEDFFRQCDPEKENLCLYGFPNEHWEVNLPA 62

Query: 66  EEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR---- 121
           EEVPPELPEPALGINFARDGMQ+KDWLS+VAVHSDAWLL+VAFYFGARFGFDK DR    
Sbjct: 63  EEVPPELPEPALGINFARDGMQEKDWLSMVAVHSDAWLLSVAFYFGARFGFDKNDRKRLF 122

Query: 122 -YINSLEILLLV 132
             IN L  +  V
Sbjct: 123 GMINDLPTIFEV 134

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8B8C5|ALFL9_ORYSI PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. indica GN=OsI_26819 PE=3 SV=1

 Score =  191 bits (485), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 106/132 (80%), Positives = 117/132 (88%), Gaps = 5/132 (3%)

Query: 6   AQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPA 65
           AQ NPRTVEEVFRDFKGRRAG+++ALT DVE+F++QCDPEKENLCLYGFP+E WEVNLPA
Sbjct: 3   AQYNPRTVEEVFRDFKGRRAGLVRALTADVEDFFRQCDPEKENLCLYGFPNEHWEVNLPA 62

Query: 66  EEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR---- 121
           EEVPPELPEPALGINFARDGMQ+KDWLS+VAVHSDAWLL+VAFYFGARFGFDK DR    
Sbjct: 63  EEVPPELPEPALGINFARDGMQEKDWLSMVAVHSDAWLLSVAFYFGARFGFDKNDRKRLF 122

Query: 122 -YINSLEILLLV 132
             IN L  +  V
Sbjct: 123 GMINDLPTIFEV 134

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9M2B4|ALFL3_ARATH PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana GN=AL3 PE=2 SV=1

 Score =  186 bits (473), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 97/121 (80%), Positives = 111/121 (91%)

Query: 1   MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWE 60
           MEGG A  NPRTVEEVF+DFKGRR  ++KALTTDV+EFYQQCDPEKENLCLYG P+E+WE
Sbjct: 1   MEGGAALYNPRTVEEVFKDFKGRRTAIVKALTTDVQEFYQQCDPEKENLCLYGLPNEEWE 60

Query: 61  VNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 120
           VNLPAEEVPPELPEPALGINFARDG+ +K+WLSLVA+HSDAWLL+V+FYFG+RF F K +
Sbjct: 61  VNLPAEEVPPELPEPALGINFARDGLSEKEWLSLVAIHSDAWLLSVSFYFGSRFSFHKEE 120

Query: 121 R 121
           R
Sbjct: 121 R 121

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40359|ALFIN_MEDSA PHD finger protein Alfin1 OS=Medicago sativa GN=ALFIN-1 PE=1 SV=1

 Score =  186 bits (471), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 102/121 (84%), Positives = 108/121 (89%)

Query: 1   MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWE 60
           MEG      PRTVEEVF D+KGRRAG+IKALTTDVE+FYQ  DPEKENLCLYGFP+E WE
Sbjct: 1   MEGMAQHPVPRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLVDPEKENLCLYGFPNETWE 60

Query: 61  VNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 120
           VNLP EEVPPELPEPALGINFARDGMQ+KDWLSLVAVHSD+WLLAVAFYFGARFGF K D
Sbjct: 61  VNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKND 120

Query: 121 R 121
           R
Sbjct: 121 R 121

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes (By similarity). Transcriptional regulator that binds specifically to DNA sequences 5'-GNGGTG-3' or 5'-GTGGNG-3', including promoter elements of the salt-inducible PRP2 gene. Plays a role in salinity tolerance.

Medicago sativa (taxid: 3879)

>sp|Q2R837|ALFL8_ORYSJ PHD finger protein ALFIN-LIKE 8 OS=Oryza sativa subsp. japonica GN=Os11g0244800 PE=2 SV=1

 Score =  182 bits (463), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 106/137 (77%), Positives = 114/137 (83%), Gaps = 8/137 (5%)

Query: 1   MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWE 60
           M+GG A    RT E+VFRDF+ RRAGMIKALTTDVE+FYQQCDPEKENLCLYG P+E WE
Sbjct: 1   MDGGGAH---RTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPNETWE 57

Query: 61  VNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 120
           VNLPAEEVPPELPEPALGINFARDGM +KDWLSLVAVHSD WLLAVAFYFGARFGFDK  
Sbjct: 58  VNLPAEEVPPELPEPALGINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKES 117

Query: 121 R-----YINSLEILLLV 132
           R      IN+L  +  V
Sbjct: 118 RKRLFSMINNLPTIYEV 134

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8BJV8|ALFL8_ORYSI PHD finger protein ALFIN-LIKE 8 OS=Oryza sativa subsp. indica GN=OsI_35671 PE=3 SV=1

 Score =  182 bits (463), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 106/137 (77%), Positives = 114/137 (83%), Gaps = 8/137 (5%)

Query: 1   MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWE 60
           M+GG A    RT E+VFRDF+ RRAGMIKALTTDVE+FYQQCDPEKENLCLYG P+E WE
Sbjct: 1   MDGGGAH---RTPEDVFRDFRARRAGMIKALTTDVEKFYQQCDPEKENLCLYGLPNETWE 57

Query: 61  VNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 120
           VNLPAEEVPPELPEPALGINFARDGM +KDWLSLVAVHSD WLLAVAFYFGARFGFDK  
Sbjct: 58  VNLPAEEVPPELPEPALGINFARDGMDEKDWLSLVAVHSDTWLLAVAFYFGARFGFDKES 117

Query: 121 R-----YINSLEILLLV 132
           R      IN+L  +  V
Sbjct: 118 RKRLFSMINNLPTIYEV 134

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q8LA16|ALFL7_ARATH PHD finger protein ALFIN-LIKE 7 OS=Arabidopsis thaliana GN=AL7 PE=1 SV=1

 Score =  180 bits (456), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 98/134 (73%), Positives = 112/134 (83%), Gaps = 5/134 (3%)

Query: 4   GVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNL 63
           G+    PRTVEEVF DF+GRRAG+IKAL+TDV++FY QCDPEKENLCLYG P+E WEVNL
Sbjct: 3   GIQHPIPRTVEEVFSDFRGRRAGLIKALSTDVQKFYHQCDPEKENLCLYGLPNETWEVNL 62

Query: 64  PAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR-- 121
           P EEVPPELPEPALGINFARDGMQ+KDW+SLVAVHSD+WL++VAFYFGARFGF K +R  
Sbjct: 63  PVEEVPPELPEPALGINFARDGMQEKDWISLVAVHSDSWLISVAFYFGARFGFGKNERKR 122

Query: 122 ---YINSLEILLLV 132
               IN L  +  V
Sbjct: 123 LFQMINDLPTIFEV 136

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
116790051	254	unknown [Picea sitchensis]	0.864	0.476	0.851	5e-56
293332673	262	uncharacterized LOC100382843 [Zea mays]	0.807	0.431	0.858	4e-54
255550121	251	DNA binding protein, putative [Ricinus c	0.935	0.521	0.868	1e-52
255546033	251	DNA binding protein, putative [Ricinus c	0.935	0.521	0.875	1e-52
224142915	253	predicted protein [Populus trichocarpa]	0.935	0.517	0.861	1e-52
168034327	248	predicted protein [Physcomitrella patens	0.942	0.532	0.734	2e-52
351721187	210	uncharacterized protein LOC100500110 [Gl	0.857	0.571	0.942	4e-52
224088776	253	predicted protein [Populus trichocarpa]	0.857	0.474	0.933	4e-52
351724691	252	PHD2 [Glycine max] gi|115394650|gb|ABI97	0.864	0.480	0.917	2e-51
225429632	253	PREDICTED: PHD finger protein ALFIN-LIKE	0.935	0.517	0.861	5e-51

>gi|116790051|gb|ABK25484.1| unknown [Picea sitchensis]

 Score =  222 bits (565), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 103/121 (85%), Positives = 112/121 (92%)

Query: 1   MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWE 60
           MEG     NPRTVEEVF+DFK RR G+IKALTTDVEEFYQQCDP+KENLCLYGFP+E WE
Sbjct: 1   MEGVSGSYNPRTVEEVFKDFKMRRNGLIKALTTDVEEFYQQCDPDKENLCLYGFPNESWE 60

Query: 61  VNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 120
           VNLPA+EVPPELPEPALGINFARDGMQ+KDWLSLVAVHSDAWLL+VAFYFGARFGFD+ +
Sbjct: 61  VNLPADEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDRNE 120

Query: 121 R 121
           R
Sbjct: 121 R 121

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|293332673|ref|NP_001169011.1| uncharacterized LOC100382843 [Zea mays] gi|223973689|gb|ACN31032.1| unknown [Zea mays] gi|414887547|tpg|DAA63561.1| TPA: putative RING zinc finger and PHD zinc finger domain family protein [Zea mays]

 Score =  215 bits (548), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 97/113 (85%), Positives = 109/113 (96%)

Query: 9   NPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEV 68
           NPRTVEEVFRDFKGRRAG+I+ALTTD E+F++QCDPEKENLCLYGFP+E WEVNLPAEEV
Sbjct: 6   NPRTVEEVFRDFKGRRAGIIRALTTDAEDFFKQCDPEKENLCLYGFPNESWEVNLPAEEV 65

Query: 69  PPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR 121
           PP+LPEPALGINFARDGMQ+K+WLS+VA HSDAWLL+VAFYFGARFGF+K DR
Sbjct: 66  PPDLPEPALGINFARDGMQEKEWLSMVAAHSDAWLLSVAFYFGARFGFNKNDR 118

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550121|ref|XP_002516111.1| DNA binding protein, putative [Ricinus communis] gi|223544597|gb|EEF46113.1| DNA binding protein, putative [Ricinus communis]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 119/137 (86%), Positives = 123/137 (89%), Gaps = 6/137 (4%)

Query: 1   MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWE 60
           M+GG A  NPRTVEEVFRDFKGRRAGMI+ALTTDVEEFYQQCDPEKENLCLYGFPSEQWE
Sbjct: 1   MDGG-ASYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQQCDPEKENLCLYGFPSEQWE 59

Query: 61  VNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 120
           VNLPAEEVPPELPEPALGINFARDGMQ+KDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD
Sbjct: 60  VNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 119

Query: 121 R-----YINSLEILLLV 132
           R      IN L  +  V
Sbjct: 120 RKRLFNMINDLPTIFEV 136

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546033|ref|XP_002514076.1| DNA binding protein, putative [Ricinus communis] gi|223546532|gb|EEF48030.1| DNA binding protein, putative [Ricinus communis]

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 120/137 (87%), Positives = 124/137 (90%), Gaps = 6/137 (4%)

Query: 1   MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWE 60
           M+GGV Q NPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFP+EQWE
Sbjct: 1   MDGGV-QYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWE 59

Query: 61  VNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 120
           VNLPAEEVPPELPEPALGINFARDGMQ+KDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD
Sbjct: 60  VNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 119

Query: 121 R-----YINSLEILLLV 132
           R      IN L  +  V
Sbjct: 120 RKRLFTMINDLPTIFEV 136

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142915|ref|XP_002324777.1| predicted protein [Populus trichocarpa] gi|222866211|gb|EEF03342.1| predicted protein [Populus trichocarpa]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 118/137 (86%), Positives = 123/137 (89%), Gaps = 6/137 (4%)

Query: 1   MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWE 60
           M+GG A  NPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWE
Sbjct: 1   MDGG-ASYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWE 59

Query: 61  VNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 120
           VNLPAEEVPPELPEPALGINFARDGMQ+KDWLSLVAVHSDAWLL+VAFYFG+RFGFDKAD
Sbjct: 60  VNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGSRFGFDKAD 119

Query: 121 R-----YINSLEILLLV 132
           R      IN L  +  V
Sbjct: 120 RKRLFSMINDLPTIFEV 136

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168034327|ref|XP_001769664.1| predicted protein [Physcomitrella patens subsp. patens] gi|162679013|gb|EDQ65465.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/132 (73%), Positives = 110/132 (83%)

Query: 1   MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWE 60
           MEG     NPR+V+EVF+D++GRR GM+KAL  DVEEFY+QCDPEKENLCLYG+P E WE
Sbjct: 1   MEGASVSTNPRSVDEVFKDYRGRRGGMLKALIADVEEFYRQCDPEKENLCLYGYPDESWE 60

Query: 61  VNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 120
           VNLPA+EVPPELPEPALGINFARDGMQ KDWLSLVAVHSDAWLLAVAFY+GARF  ++  
Sbjct: 61  VNLPADEVPPELPEPALGINFARDGMQRKDWLSLVAVHSDAWLLAVAFYYGARFDKNERK 120

Query: 121 RYINSLEILLLV 132
           R  N +  L  V
Sbjct: 121 RLFNLINELPTV 132

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721187|ref|NP_001236945.1| uncharacterized protein LOC100500110 [Glycine max] gi|255629259|gb|ACU14974.1| unknown [Glycine max]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 114/121 (94%), Positives = 118/121 (97%), Gaps = 1/121 (0%)

Query: 1   MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWE 60
           M+GGV   NPRTVEEVFRDFKGRRAGMIKALTTDVEEF+QQCDPEK+NLCLYGFP+EQWE
Sbjct: 1   MDGGV-NYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFFQQCDPEKDNLCLYGFPNEQWE 59

Query: 61  VNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 120
           VNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD
Sbjct: 60  VNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 119

Query: 121 R 121
           R
Sbjct: 120 R 120

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088776|ref|XP_002308535.1| predicted protein [Populus trichocarpa] gi|222854511|gb|EEE92058.1| predicted protein [Populus trichocarpa]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 113/121 (93%), Positives = 118/121 (97%), Gaps = 1/121 (0%)

Query: 1   MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWE 60
           M+GG A  NPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWE
Sbjct: 1   MDGG-ASYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWE 59

Query: 61  VNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 120
           VNLPAEEVPPELPEPALGINFARDGMQ+KDWLSLVAVHSDAWLL+V+FYFG+RFGFDKAD
Sbjct: 60  VNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVSFYFGSRFGFDKAD 119

Query: 121 R 121
           R
Sbjct: 120 R 120

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724691|ref|NP_001237834.1| PHD2 [Glycine max] gi|115394650|gb|ABI97241.1| PHD2 [Glycine max]

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 111/121 (91%), Positives = 116/121 (95%)

Query: 1   MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWE 60
           M+GG    NPRTVE+VFRDFKGRRAGMIKALTTDVEEF+QQCDPEK+NLCLYGFP+EQWE
Sbjct: 1   MDGGGVNYNPRTVEQVFRDFKGRRAGMIKALTTDVEEFFQQCDPEKDNLCLYGFPNEQWE 60

Query: 61  VNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 120
           VNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFD AD
Sbjct: 61  VNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDNAD 120

Query: 121 R 121
           R
Sbjct: 121 R 121

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429632|ref|XP_002280895.1| PREDICTED: PHD finger protein ALFIN-LIKE 5 [Vitis vinifera] gi|296081695|emb|CBI20700.3| unnamed protein product [Vitis vinifera]

 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 118/137 (86%), Positives = 122/137 (89%), Gaps = 6/137 (4%)

Query: 1   MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWE 60
           M+GG    NPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDP+KENLCLYGFPSEQWE
Sbjct: 1   MDGG-PPYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPDKENLCLYGFPSEQWE 59

Query: 61  VNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 120
           VNLPAEEVPPELPEPALGINFARDGMQ+KDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD
Sbjct: 60  VNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 119

Query: 121 R-----YINSLEILLLV 132
           R      IN L  +  V
Sbjct: 120 RKRLFNMINDLPTIFEV 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
TAIR|locus:2149867	260	AL5 "AT5G20510" [Arabidopsis t	0.864	0.465	0.702	6.4e-44
TAIR|locus:2179709	255	AL4 "AT5G26210" [Arabidopsis t	0.857	0.470	0.735	4.5e-43
TAIR|locus:2099321	250	AL3 "AT3G42790" [Arabidopsis t	0.864	0.484	0.652	3.6e-41
UNIPROTKB|Q40359	257	ALFIN-1 "PHD finger protein Al	0.864	0.470	0.702	7.5e-41
TAIR|locus:2012577	252	AL7 "AT1G14510" [Arabidopsis t	0.857	0.476	0.652	2.9e-39
TAIR|locus:2056281	256	AL6 "AT2G02470" [Arabidopsis t	0.857	0.468	0.652	1.6e-38
TAIR|locus:2074663	246	AL2 "AT3G11200" [Arabidopsis t	0.921	0.524	0.553	5.1e-35
TAIR|locus:2169707	241	AL1 "AT5G05610" [Arabidopsis t	0.892	0.518	0.546	2.9e-32

TAIR|locus:2149867 AL5 "AT5G20510" [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
 Identities = 85/121 (70%), Positives = 99/121 (81%)

Query:     1 MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWX 60
             MEGG A  +PRTVEEVFRDFKGRRAG+I+ALTTDVE+F+QQCDPEK+NLCLYGFP+E W 
Sbjct:     1 MEGGTAHYSPRTVEEVFRDFKGRRAGIIQALTTDVEDFFQQCDPEKQNLCLYGFPNEVWE 60

Query:    61 XXXXXXXXXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 120
                              GINFARDGMQ+++WLSLVAVHSDAWLL+V+FYFG+RFGFD+AD
Sbjct:    61 VNLPAEEVPPELPEPALGINFARDGMQERNWLSLVAVHSDAWLLSVSFYFGSRFGFDRAD 120

Query:   121 R 121
             R
Sbjct:   121 R 121

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

TAIR|locus:2179709 AL4 "AT5G26210" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 89/121 (73%), Positives = 95/121 (78%)

Query:     1 MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWX 60
             ME G A N PRTVEEVFRDFKGRRAGMIKALTTDV+EF++ CDPEKENLCLYG P+E W 
Sbjct:     1 MEAGGAYN-PRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWE 59

Query:    61 XXXXXXXXXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 120
                              GINFARDGM +KDWLSLVAVHSDAWLLAVAF+FGARFGFDKAD
Sbjct:    60 VNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKAD 119

Query:   121 R 121
             R
Sbjct:   120 R 120

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2099321 AL3 "AT3G42790" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 79/121 (65%), Positives = 93/121 (76%)

Query:     1 MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWX 60
             MEGG A  NPRTVEEVF+DFKGRR  ++KALTTDV+EFYQQCDPEKENLCLYG P+E+W 
Sbjct:     1 MEGGAALYNPRTVEEVFKDFKGRRTAIVKALTTDVQEFYQQCDPEKENLCLYGLPNEEWE 60

Query:    61 XXXXXXXXXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 120
                              GINFARDG+ +K+WLSLVA+HSDAWLL+V+FYFG+RF F K +
Sbjct:    61 VNLPAEEVPPELPEPALGINFARDGLSEKEWLSLVAIHSDAWLLSVSFYFGSRFSFHKEE 120

Query:   121 R 121
             R
Sbjct:   121 R 121

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

UNIPROTKB|Q40359 ALFIN-1 "PHD finger protein Alfin1" [Medicago sativa (taxid:3879)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 85/121 (70%), Positives = 91/121 (75%)

Query:     1 MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWX 60
             MEG      PRTVEEVF D+KGRRAG+IKALTTDVE+FYQ  DPEKENLCLYGFP+E W 
Sbjct:     1 MEGMAQHPVPRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLVDPEKENLCLYGFPNETWE 60

Query:    61 XXXXXXXXXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 120
                              GINFARDGMQ+KDWLSLVAVHSD+WLLAVAFYFGARFGF K D
Sbjct:    61 VNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKND 120

Query:   121 R 121
             R
Sbjct:   121 R 121

GO:0003677 "DNA binding" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0045727 "positive regulation of translation" evidence=IDA

GO:0071472 "cellular response to salt stress" evidence=IDA

TAIR|locus:2012577 AL7 "AT1G14510" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 79/121 (65%), Positives = 92/121 (76%)

Query:     1 MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWX 60
             MEG +    PRTVEEVF DF+GRRAG+IKAL+TDV++FY QCDPEKENLCLYG P+E W 
Sbjct:     1 MEG-IQHPIPRTVEEVFSDFRGRRAGLIKALSTDVQKFYHQCDPEKENLCLYGLPNETWE 59

Query:    61 XXXXXXXXXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 120
                              GINFARDGMQ+KDW+SLVAVHSD+WL++VAFYFGARFGF K +
Sbjct:    60 VNLPVEEVPPELPEPALGINFARDGMQEKDWISLVAVHSDSWLISVAFYFGARFGFGKNE 119

Query:   121 R 121
             R
Sbjct:   120 R 120

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IDA

TAIR|locus:2056281 AL6 "AT2G02470" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 79/121 (65%), Positives = 90/121 (74%)

Query:     1 MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWX 60
             MEG +    PRTVEEVF DF+GRRAG+IKALT D+ +FYQ CDPEKENLCLYG P+E W 
Sbjct:     1 MEG-ITHPIPRTVEEVFSDFRGRRAGLIKALTNDMVKFYQTCDPEKENLCLYGLPNETWE 59

Query:    61 XXXXXXXXXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 120
                              GINFARDGMQ+KDW+SLVAVHSD+WLL+VAFYFGARFGF K +
Sbjct:    60 VNLPVEEVPPELPEPALGINFARDGMQEKDWVSLVAVHSDSWLLSVAFYFGARFGFGKNE 119

Query:   121 R 121
             R
Sbjct:   120 R 120

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2074663 AL2 "AT3G11200" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 73/132 (55%), Positives = 87/132 (65%)

Query:     1 MEGGVAQNNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWX 60
             M      +NPRTVEE+F+D+  RRA +++ALT DV++FY QCDPEKENLCLYG P+E W 
Sbjct:     1 MAAAAVSSNPRTVEEIFKDYSARRAALLRALTKDVDDFYSQCDPEKENLCLYGHPNESWE 60

Query:    61 XXXXXXXXXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKAD 120
                              GINFARDGMQ KDWLSLVAVHSD WLL+V+FYFGAR   ++  
Sbjct:    61 VNLPAEEVPPELPEPALGINFARDGMQRKDWLSLVAVHSDCWLLSVSFYFGARLNRNERK 120

Query:   121 RY---INSLEIL 129
             R    IN L  L
Sbjct:   121 RLFSLINDLPTL 132

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007067 "mitosis" evidence=RCA

TAIR|locus:2169707 AL1 "AT5G05610" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 70/128 (54%), Positives = 84/128 (65%)

Query:     8 NNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWXXXXXXXX 67
             +NPRTVEE+F+DF GRR+G ++AL+ DV++FY  CDPE ENLCLYG P+  W        
Sbjct:     6 SNPRTVEEIFKDFSGRRSGFLRALSVDVDKFYSLCDPEMENLCLYGHPNGTWEVNLPAEE 65

Query:    68 XXXXXXXXXXGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRY---IN 124
                       GINFARDGMQ KDWLSLVAVHSD WLL+V+ YFGAR   ++  R    IN
Sbjct:    66 VPPELPEPALGINFARDGMQRKDWLSLVAVHSDCWLLSVSSYFGARLNRNERKRLFSLIN 125

Query:   125 SLEILLLV 132
              L  L  V
Sbjct:   126 DLPTLFEV 133


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.140   0.440    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      140       122   0.00091  102 3  11 22  0.46    30
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  146 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.70u 0.17s 10.87t   Elapsed:  00:00:00
  Total cpu time:  10.70u 0.17s 10.87t   Elapsed:  00:00:00
  Start:  Sat May 11 05:33:06 2013   End:  Sat May 11 05:33:06 2013

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5XEM9	ALFL5_ARATH	No assigned EC number	0.8512	0.8642	0.4653	yes	no
Q7XUW3	ALFL4_ORYSJ	No assigned EC number	0.712	0.8642	0.4726	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	140
pfam12165	137	pfam12165, DUF3594, Domain of unknown function (DU	5e-82

>gnl|CDD|221449 pfam12165, DUF3594, Domain of unknown function (DUF3594)

 Score =  237 bits (605), Expect = 5e-82
 Identities = 96/111 (86%), Positives = 107/111 (96%)

Query: 11  RTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPP 70
           RTVEE+F+DFK RRAG++KALTTDVE+FYQQCDPEKENLCLYG P+E WEVNLPAEEVPP
Sbjct: 1   RTVEEIFKDFKARRAGIVKALTTDVEDFYQQCDPEKENLCLYGLPNESWEVNLPAEEVPP 60

Query: 71  ELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR 121
           ELPEPALGINFARDGMQ+KDWLSLVAVHSD+WLL+VAFYFGARFGF++ DR
Sbjct: 61  ELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLSVAFYFGARFGFNRNDR 111

This presumed domain is functionally uncharacterized.This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam00628. Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
PF12165	137	DUF3594: Domain of unknown function (DUF3594); Int	100.0
KOG1632	345	consensus Uncharacterized PHD Zn-finger protein [G	99.96

>PF12165 DUF3594: Domain of unknown function (DUF3594); InterPro: IPR021998 This presumed domain is functionally uncharacterised

Probab=100.00  E-value=4.4e-92  Score=542.19  Aligned_cols=130  Identities=78%  Similarity=1.323  Sum_probs=128.2

Q ss_pred             CCHHHHHHhhhhhHhHHHHhhhhhHHHHhhcCCcCCcceeeeeCCCCceeeeCCCCCCCCCCCCCccCccccCCCCcchh
Q 032447           11 RTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQDKD   90 (140)
Q Consensus        11 rtvE~iF~Df~~RR~giirALT~Dve~Fy~~CDP~kenLcLYG~p~~~WeV~lPaeevPpeLPEPalGINfaRDgM~rkd   90 (140)
                      ||||+||+||++||+|||||||+|||+||+||||+||||||||+|||+|||+||+||||||||||+||||||||||+|||
T Consensus         1 rtve~if~df~~RR~g~v~ALT~dve~Fy~~CDP~kenLCLYG~p~~~WeV~lP~eevPpeLPEPaLGINfaRDgM~r~d   80 (137)
T PF12165_consen    1 RTVEEIFRDFSGRRAGIVRALTTDVEEFYQQCDPEKENLCLYGHPDGTWEVNLPAEEVPPELPEPALGINFARDGMQRKD   80 (137)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccceEEecCCCCCeEEeCChHhCCCCCCCcccCcccccCCccHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhHHHHHHHHhhhccccCcccc-----ccccchhhhhhhhcccccC
Q 032447           91 WLSLVAVHSDAWLLAVAFYFGARFGFDKADR-----YINSLEILLLVKCSFNLRQ  140 (140)
Q Consensus        91 WLslVAvHSDsWLlsvAfy~gar~gfd~~~R-----miN~lpTv~Evv~~~~~~~  140 (140)
                      |||||||||||||||||||||||||||+++|     |||+||||||||+|..-||
T Consensus        81 WLslVAvHsDsWLlsvAfy~gar~~~~~~~R~rLF~mIN~lpTv~Evv~g~~~~q  135 (137)
T PF12165_consen   81 WLSLVAVHSDSWLLSVAFYFGARFGFDKNERKRLFSMINDLPTVFEVVTGRAKKQ  135 (137)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhhccChHHHHHHHHHHhcCchHHHHHhcccccc
Confidence            9999999999999999999999999999999     9999999999999988776

This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00628 from PFAM.

>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]

Probab=99.96  E-value=1.7e-30  Score=219.32  Aligned_cols=131  Identities=37%  Similarity=0.532  Sum_probs=125.9

Q ss_pred             CCCCCHHHHHHhhhhhHhHHHHhhhhhHHHHhhcCCc----CCcceeeeeCCCCceeeeCCCCCCCCCCCCCccCccccC
Q 032447            8 NNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDP----EKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFAR   83 (140)
Q Consensus         8 ~~prtvE~iF~Df~~RR~giirALT~Dve~Fy~~CDP----~kenLcLYG~p~~~WeV~lPaeevPpeLPEPalGINfaR   83 (140)
                      +.+++++++|.+|++||+++++|+++++.+||.+|||    .++++|+|+++++.|+|++|.+|+|+++++++.|+|+++
T Consensus        35 ~~~~~~~~~~~~~k~~~~~~~~a~~~~~~~~~~~~~p~~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~  114 (345)
T KOG1632|consen   35 PIERPVPDVFRGRKGRRGGLLKALTQRYCKCYKPCDPDDLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQ  114 (345)
T ss_pred             CCCCCCcccccccccccccccHhhhhchhhcccccCchhhhhccccccccccccccccCchhhcCCccccccccccchhh
Confidence            7889999999999999999999999999999999999    689999999999999999999999999999999999999


Q ss_pred             CCCcchhhhhhhhhhhhhHHHHHHHHhhhcc-----ccCcccc-----ccccchhhhhhhhcccc
Q 032447           84 DGMQDKDWLSLVAVHSDAWLLAVAFYFGARF-----GFDKADR-----YINSLEILLLVKCSFNL  138 (140)
Q Consensus        84 DgM~rkdWLslVAvHSDsWLlsvAfy~gar~-----gfd~~~R-----miN~lpTv~Evv~~~~~  138 (140)
                      |||+.+|||+++++|+|+|+.+++||||+++     ++.+.+|     ++|++|||++++++...
T Consensus       115 ~~~~~~~~l~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~t~~~~~~~~~~  179 (345)
T KOG1632|consen  115 DGMSESDGLSCVCRQDDSELLSPSFYFGKRGCQFWVKLQKLGRVRLEAEKNDDPTVFEVVSGTAT  179 (345)
T ss_pred             hhhhhhccceeecccccccccccccccCCccccccccchhhhhhhhhhhhcccchhhhccccccc
Confidence            9999999999999999999999999999998     7777777     99999999999998653

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00