Citrus Sinensis ID: 032448

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVEMS
Secondary Structure (PSIPRED)
cccEEEEEEEccEEEEEEccccccHHHHHHHHHHcccccccccEEEEEccEEEEEEEEccEEEEEEEEcccccccHHHHHHHHHHHHHHHHcHHHHHccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEcccEEEEEEccccccHHHHHHHHHHHcccccccEEEEEcccEEEEEEEcccEEEEEEEccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAILFSLVARGSVVLAECSATATNASAIARQILdkipgnndshvsysqdryifhvkrtdgltvlcmaddtagrripfaFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEyysddpnadrINRIKGEMSQVEMS
Flexible Loop (DISEMBL)
MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYysddpnadrINRIKGemsqvems
Low Complexity Region (SEG)
MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVEMS
Disordered region (IsUnstruct)
**ILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVL*****************************
Disordered Region (DISOPRED)
MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQM******************MS*V***
Disordered Region (DISEMBL)
MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVEMS
Disordered Region (DISPRO)
MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMS*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVEMS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	140	2.2.26 [Sep-21-2011]
Q9LFP1	221	Vesicle-associated membra	yes	no	0.978	0.619	0.826	1e-64
Q9SIQ9	219	Vesicle-associated membra	no	no	0.978	0.625	0.817	2e-64
O49377	219	Vesicle-associated membra	no	no	0.978	0.625	0.810	4e-64
Q9FMR5	221	Vesicle-associated membra	no	no	0.978	0.619	0.572	2e-45
Q86AQ7	260	Vesicle-associated membra	yes	no	0.978	0.526	0.492	6e-32
Q9JHW5	220	Vesicle-associated membra	yes	no	0.978	0.622	0.369	6e-23
Q5ZL74	220	Vesicle-associated membra	yes	no	0.978	0.622	0.376	1e-22
P70280	220	Vesicle-associated membra	yes	no	0.978	0.622	0.362	2e-22
P51809	220	Vesicle-associated membra	no	no	0.978	0.622	0.369	3e-22
Q17QI5	220	Vesicle-associated membra	yes	no	0.978	0.622	0.369	3e-22

>sp|Q9LFP1|VA713_ARATH Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1

 Score =  244 bits (624), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 114/138 (82%), Positives = 133/138 (96%), Gaps = 1/138 (0%)

Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNN-DSHVSYSQDRYIFHVKRTD 59
           MAI+F+LVARG+VVL+E SAT+TNAS+I++QIL+K+PGN+ DSH+SYSQDRYIFHVKRTD
Sbjct: 1   MAIIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTD 60

Query: 60  GLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYS 119
           GLTVLCMAD+TAGR IPFAFL+DIHQRFVKTYGRA+ SAQAY MNDEFSRVLSQQME+YS
Sbjct: 61  GLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRAIHSAQAYSMNDEFSRVLSQQMEFYS 120

Query: 120 DDPNADRINRIKGEMSQV 137
           +DPNADR++RIKGEMSQV
Sbjct: 121 NDPNADRMSRIKGEMSQV 138

Involved in the targeting and/or fusion of transport vesicles to their target membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIQ9|VA712_ARATH Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=3 SV=1

 Score =  243 bits (620), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 112/137 (81%), Positives = 129/137 (94%)

Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           M+IL++LVARG+VVLAE S T+TNAS IA+QIL+KIPGN DSHVSYSQDRY+FHVKRTDG
Sbjct: 1   MSILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDG 60

Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           LTVLCMAD+ AGRRIPF+FLEDIHQRFV+TYGRA+ SAQAY MNDEFSRVL+QQ+EYYS+
Sbjct: 61  LTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRAIHSAQAYAMNDEFSRVLNQQIEYYSN 120

Query: 121 DPNADRINRIKGEMSQV 137
           DPNAD I+RIKGEM+QV
Sbjct: 121 DPNADTISRIKGEMNQV 137

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|O49377|VA711_ARATH Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2

 Score =  242 bits (618), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 111/137 (81%), Positives = 132/137 (96%)

Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           MAIL++LVARG+VVL+E +AT+TNAS IA+QIL+K+PG+NDS+VSYSQDRY+FHVKRTDG
Sbjct: 1   MAILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDG 60

Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           LTVLCMA++TAGRRIPFAFLEDIHQRFV+TYGRAV +A AY MN+EFSRVLSQQ++YYS+
Sbjct: 61  LTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRAVHTALAYAMNEEFSRVLSQQIDYYSN 120

Query: 121 DPNADRINRIKGEMSQV 137
           DPNADRINRIKGEM+QV
Sbjct: 121 DPNADRINRIKGEMNQV 137

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMR5|VA714_ARATH Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1

 Score =  181 bits (458), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 79/138 (57%), Positives = 111/138 (80%), Gaps = 1/138 (0%)

Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKI-PGNNDSHVSYSQDRYIFHVKRTD 59
           MAI++++VARG+VVLAE SA   N  A+ R+IL+K+ P  +D  + +SQDRYIFH+ R+D
Sbjct: 1   MAIVYAVVARGTVVLAEFSAVTGNTGAVVRRILEKLSPEISDERLCFSQDRYIFHILRSD 60

Query: 60  GLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYS 119
           GLT LCMA+DT GRR+PF++LE+IH RF+K YG+   +A AY MNDEFSRVL QQME++S
Sbjct: 61  GLTFLCMANDTFGRRVPFSYLEEIHMRFMKNYGKVAHNAPAYAMNDEFSRVLHQQMEFFS 120

Query: 120 DDPNADRINRIKGEMSQV 137
            +P+ D +NR++GE+S++
Sbjct: 121 SNPSVDTLNRVRGEVSEI 138

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q86AQ7|VAM7B_DICDI Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1

 Score =  135 bits (341), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/138 (49%), Positives = 91/138 (65%), Gaps = 1/138 (0%)

Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           M I++SLVARGS VLAE ++T  N   I R+ILD IP N D+ +SY  ++YIFH   +D 
Sbjct: 1   MPIIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPN-DTKMSYVYEKYIFHYLVSDT 59

Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           LT LCMAD+  GRRIPF FL+D+  RF   YG    +A AYGMN +FSR L   M++YS+
Sbjct: 60  LTYLCMADEEFGRRIPFTFLDDVKNRFKSMYGDKGKTAIAYGMNSDFSRTLENLMDHYSN 119

Query: 121 DPNADRINRIKGEMSQVE 138
               D ++R   E+ +V+
Sbjct: 120 TTRVDTMSRTMAEIDEVK 137

Involved in the targeting and/or fusion of transport vesicles to their target membrane during transport of proteins from the early endosome to the lysosome. Required for heterotypic fusion of late endosomes with lysosomes and homotypic lysosomal fusion.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9JHW5|VAMP7_RAT Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 83/138 (60%), Gaps = 1/138 (0%)

Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           MAILF++VARG+ +LA+ +    N   +  QIL KIP  N+  ++YS   Y+FH    D 
Sbjct: 1   MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 59

Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           +  LC+ DD   R   F FL ++ +RF  TYG    +A  Y MN EFS VL+ Q++++S+
Sbjct: 60  IVYLCITDDDFERSRAFGFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 119

Query: 121 DPNADRINRIKGEMSQVE 138
           + + DR+   + ++ +++
Sbjct: 120 NQSLDRVTETQAQVDELK 137

Involved in the targeting and/or fusion of transport vesicles to their target membrane during transport of proteins from the early endosome to the lysosome. Required for heterotypic fusion of late endosomes with lysosomes and homotypic lysosomal fusion. Required for calcium regulated lysosomal exocytosis. Involved in the export of chylomicrons from the endoplasmic reticulum to the cis Golgi. Required for exocytosis of mediators during eosinophil and neutrophil degranulation, and target cell killing by natural killer cells. Required for focal exocytosis of late endocytic vesicles during phagosome formation.

Rattus norvegicus (taxid: 10116)

>sp|Q5ZL74|VAMP7_CHICK Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/138 (37%), Positives = 81/138 (58%), Gaps = 1/138 (0%)

Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           MAILF++VARG+ +LA+ +    N   +  QIL KIP  N+  ++YS   Y+FH    D 
Sbjct: 1   MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 59

Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           +  LC+ DD   R   F FL +I +RF  TYG    +A  Y MN EFS VL+ Q++Y+S+
Sbjct: 60  IIYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKYHSE 119

Query: 121 DPNADRINRIKGEMSQVE 138
               D++   + ++ +++
Sbjct: 120 SKGTDQVAETQAQVDELK 137

Involved in the targeting and/or fusion of transport vesicles to their target membrane during transport of proteins from the early endosome to the lysosome. Required for heterotypic fusion of late endosomes with lysosomes and homotypic lysosomal fusion. Required for calcium regulated lysosomal exocytosis. Involved in the export of chylomicrons from the endoplasmic reticulum to the cis Golgi. Required for focal exocytosis of late endocytic vesicles during phagosome formation.

Gallus gallus (taxid: 9031)

>sp|P70280|VAMP7_MOUSE Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=1 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 84/138 (60%), Gaps = 1/138 (0%)

Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           MAILF++VARG+ +LA+ +    N   +  QIL KIP  N+  ++YS   Y+FH    D 
Sbjct: 1   MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 59

Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           +  LC+ DD   R   F+FL ++ +RF  TYG    +A  Y MN EFS VL+ Q++++S+
Sbjct: 60  IVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 119

Query: 121 DPNADRINRIKGEMSQVE 138
           + + D++   + ++ +++
Sbjct: 120 NKSLDKVMETQAQVDELK 137

Involved in the targeting and/or fusion of transport vesicles to their target membrane during transport of proteins from the early endosome to the lysosome. Required for heterotypic fusion of late endosomes with lysosomes and homotypic lysosomal fusion. Required for calcium regulated lysosomal exocytosis. Involved in the export of chylomicrons from the endoplasmic reticulum to the cis Golgi. Required for exocytosis of mediators during eosinophil and neutrophil degranulation, and target cell killing by natural killer cells. Required for focal exocytosis of late endocytic vesicles during phagosome formation.

Mus musculus (taxid: 10090)

>sp|P51809|VAMP7_HUMAN Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 82/138 (59%), Gaps = 1/138 (0%)

Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           MAILF++VARG+ +LA+ +    N   +  QIL KIP  N+  ++YS   Y+FH    D 
Sbjct: 1   MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 59

Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           +  LC+ DD   R   F FL +I +RF  TYG    +A  Y MN EFS VL+ Q++++S+
Sbjct: 60  IVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 119

Query: 121 DPNADRINRIKGEMSQVE 138
           +   D++   + ++ +++
Sbjct: 120 NKGLDKVMETQAQVDELK 137

Involved in the targeting and/or fusion of transport vesicles to their target membrane during transport of proteins from the early endosome to the lysosome. Required for heterotypic fusion of late endosomes with lysosomes and homotypic lysosomal fusion. Required for calcium regulated lysosomal exocytosis. Involved in the export of chylomicrons from the endoplasmic reticulum to the cis Golgi. Required for exocytosis of mediators during eosinophil and neutrophil degranulation, and target cell killing by natural killer cells. Required for focal exocytosis of late endocytic vesicles during phagosome formation.

Homo sapiens (taxid: 9606)

>sp|Q17QI5|VAMP7_BOVIN Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 82/138 (59%), Gaps = 1/138 (0%)

Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           MAILF++VARG+ +LA+ +    N   +  QIL KIP  N+  ++YS   Y+FH    D 
Sbjct: 1   MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 59

Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           +  LC+ DD   R   F FL +I +RF  TYG    +A  Y MN EFS VL+ Q++++S+
Sbjct: 60  IVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 119

Query: 121 DPNADRINRIKGEMSQVE 138
           +   D++   + ++ +++
Sbjct: 120 NKGLDKVMETQAQVDELK 137

Involved in the targeting and/or fusion of transport vesicles to their target membrane during transport of proteins from the early endosome to the lysosome. Required for heterotypic fusion of late endosomes with lysosomes and homotypic lysosomal fusion. Required for calcium regulated lysosomal exocytosis. Involved in the export of chylomicrons from the endoplasmic reticulum to the cis Golgi. Required for exocytosis of mediators during eosinophil and neutrophil degranulation, and target cell killing by natural killer cells. Required for focal exocytosis of late endocytic vesicles during phagosome formation.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
255548872	220	Vesicle-associated membrane protein, put	0.978	0.622	0.919	3e-69
444436404	223	VAMP7-like protein [Eucalyptus cladocaly	0.978	0.614	0.912	3e-68
224141911	220	predicted protein [Populus trichocarpa]	0.978	0.622	0.890	3e-68
449437158	219	PREDICTED: vesicle-associated membrane p	0.978	0.625	0.897	6e-68
224089278	220	predicted protein [Populus trichocarpa]	0.978	0.622	0.883	2e-67
356501396	219	PREDICTED: vesicle-associated membrane p	0.978	0.625	0.883	6e-67
388492222	219	unknown [Lotus japonicus]	0.985	0.630	0.855	3e-66
225430324	220	PREDICTED: vesicle-associated membrane p	0.985	0.627	0.869	7e-66
363806654	265	uncharacterized protein LOC100820063 [Gl	0.978	0.516	0.868	2e-65
357493899	219	Vesicle-associated membrane protein 7C [	0.978	0.625	0.832	1e-64

>gi|255548872|ref|XP_002515492.1| Vesicle-associated membrane protein, putative [Ricinus communis] gi|223545436|gb|EEF46941.1| Vesicle-associated membrane protein, putative [Ricinus communis]

 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 126/137 (91%), Positives = 134/137 (97%)

Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           MAIL++LVARGSVVLAE +ATATNASAIARQIL+KIPGNNDSHVSYSQDRYIFHVKRTDG
Sbjct: 1   MAILYALVARGSVVLAEFTATATNASAIARQILEKIPGNNDSHVSYSQDRYIFHVKRTDG 60

Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           LTVLCMADDTAGRRIPFAFLEDIHQRFV+TYGRAV SAQAY MNDEFSRVL+QQMEYYS+
Sbjct: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVRTYGRAVHSAQAYAMNDEFSRVLNQQMEYYSN 120

Query: 121 DPNADRINRIKGEMSQV 137
           DPNADRINR+KGEMSQV
Sbjct: 121 DPNADRINRLKGEMSQV 137

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444436404|gb|AGE09570.1| VAMP7-like protein [Eucalyptus cladocalyx]

 Score =  262 bits (670), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 125/137 (91%), Positives = 132/137 (96%)

Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           MAIL++LVARGSVVLAE SATATNAS IARQIL+KIPG +DSH SYSQDRYIFHVKRTDG
Sbjct: 4   MAILYALVARGSVVLAEFSATATNASQIARQILEKIPGAHDSHASYSQDRYIFHVKRTDG 63

Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           LTVLCMADDTAGRRIPFAFLEDIHQRFV+TYGRAVLSAQAY MNDEFSRVLSQQMEYYS+
Sbjct: 64  LTVLCMADDTAGRRIPFAFLEDIHQRFVRTYGRAVLSAQAYAMNDEFSRVLSQQMEYYSN 123

Query: 121 DPNADRINRIKGEMSQV 137
           DPNADRINR+KGEMSQV
Sbjct: 124 DPNADRINRLKGEMSQV 140

Source: Eucalyptus cladocalyx

Species: Eucalyptus cladocalyx

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141911|ref|XP_002324304.1| predicted protein [Populus trichocarpa] gi|118482139|gb|ABK93000.1| unknown [Populus trichocarpa] gi|222865738|gb|EEF02869.1| predicted protein [Populus trichocarpa]

 Score =  262 bits (670), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 122/137 (89%), Positives = 135/137 (98%)

Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           MAIL++LVARGSVVLAE ++TATNASAIARQILDKIPGN+DS+VSYSQDRYIFHVKRTDG
Sbjct: 1   MAILYALVARGSVVLAEFTSTATNASAIARQILDKIPGNDDSNVSYSQDRYIFHVKRTDG 60

Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           LTVLCMAD+TAGRRIPFAFLEDIHQRFV+TYGRAV++AQAY MNDEFSRVLSQQMEYY++
Sbjct: 61  LTVLCMADETAGRRIPFAFLEDIHQRFVRTYGRAVITAQAYAMNDEFSRVLSQQMEYYTN 120

Query: 121 DPNADRINRIKGEMSQV 137
           DPNADRINR+KGEMSQV
Sbjct: 121 DPNADRINRLKGEMSQV 137

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437158|ref|XP_004136359.1| PREDICTED: vesicle-associated membrane protein 713-like [Cucumis sativus] gi|449516866|ref|XP_004165467.1| PREDICTED: vesicle-associated membrane protein 713-like [Cucumis sativus]

 Score =  261 bits (667), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 123/137 (89%), Positives = 133/137 (97%)

Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           MAI+++LVARGSVVLAE SAT TNAS+I+RQILDKIPGN+DSHVSYSQDRYIFHVKRTDG
Sbjct: 1   MAIIYALVARGSVVLAEFSATPTNASSISRQILDKIPGNDDSHVSYSQDRYIFHVKRTDG 60

Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           LTVLCMADDTAGRRIPFAFLEDIHQRFV+TYGRAV SA AYGMNDEFSRVLSQQ+EYYS+
Sbjct: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVRTYGRAVHSANAYGMNDEFSRVLSQQLEYYSN 120

Query: 121 DPNADRINRIKGEMSQV 137
           DPNADRINR+KGEMSQV
Sbjct: 121 DPNADRINRLKGEMSQV 137

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089278|ref|XP_002308673.1| predicted protein [Populus trichocarpa] gi|118487208|gb|ABK95432.1| unknown [Populus trichocarpa] gi|222854649|gb|EEE92196.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (662), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 121/137 (88%), Positives = 133/137 (97%)

Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           MAIL++LVARGSVVLAE S+TATNASAIARQILDKIPGN+DS+VSYSQDRYIFHVKRTDG
Sbjct: 1   MAILYALVARGSVVLAEFSSTATNASAIARQILDKIPGNDDSNVSYSQDRYIFHVKRTDG 60

Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           L VLCMAD+TAGRRIPFAFLEDIHQRF +TYGRAV++AQAY MNDEFSRVLSQQMEYY++
Sbjct: 61  LAVLCMADETAGRRIPFAFLEDIHQRFARTYGRAVITAQAYAMNDEFSRVLSQQMEYYTN 120

Query: 121 DPNADRINRIKGEMSQV 137
           DPNADRINR+KGEMSQV
Sbjct: 121 DPNADRINRLKGEMSQV 137

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501396|ref|XP_003519511.1| PREDICTED: vesicle-associated membrane protein 713-like [Glycine max]

 Score =  258 bits (658), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 121/137 (88%), Positives = 129/137 (94%)

Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           M IL++LV RGSVVLAE S T TNASAIARQIL+KIPGNND+HVSYSQDRYIFHVKRTDG
Sbjct: 1   MGILYALVGRGSVVLAEFSGTTTNASAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDG 60

Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           LTVLCMADDTAGRRIPFAFLEDIHQ+FV+TYGRAV SAQ YGMN+EFSRVLSQQMEYYS 
Sbjct: 61  LTVLCMADDTAGRRIPFAFLEDIHQKFVRTYGRAVHSAQPYGMNEEFSRVLSQQMEYYSS 120

Query: 121 DPNADRINRIKGEMSQV 137
           DPNADRINR+KGEMSQV
Sbjct: 121 DPNADRINRLKGEMSQV 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492222|gb|AFK34177.1| unknown [Lotus japonicus]

 Score =  256 bits (653), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/138 (85%), Positives = 129/138 (93%)

Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           M IL++LVARGSV LAE S TATNAS IA+QILDKIPGNND+HVSYSQDR+IFH+KRTDG
Sbjct: 1   MGILYALVARGSVALAEFSGTATNASTIAKQILDKIPGNNDTHVSYSQDRFIFHLKRTDG 60

Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           LTVLCMADD AGRRIPFAFLE+IHQRFV+TYGRAV SAQ YGMNDEFSRVLSQQMEY+S 
Sbjct: 61  LTVLCMADDNAGRRIPFAFLEEIHQRFVRTYGRAVFSAQPYGMNDEFSRVLSQQMEYFSS 120

Query: 121 DPNADRINRIKGEMSQVE 138
           DPNADRINR+KGEMSQV+
Sbjct: 121 DPNADRINRLKGEMSQVK 138

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430324|ref|XP_002285207.1| PREDICTED: vesicle-associated membrane protein 713 [Vitis vinifera] gi|296082055|emb|CBI21060.3| unnamed protein product [Vitis vinifera]

 Score =  254 bits (650), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 120/138 (86%), Positives = 131/138 (94%)

Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           M IL++LVARGS+VLAE S T+TNASAIARQIL+KIPG+NDS+VSYSQDRYIFHVKRTDG
Sbjct: 1   MTILYALVARGSLVLAEFSGTSTNASAIARQILEKIPGDNDSNVSYSQDRYIFHVKRTDG 60

Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           LTVLCMADDTAGRRIPFAFLEDIHQRFV+TYGRAV SAQAY MND+FSRVLSQQMEYYS+
Sbjct: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVRTYGRAVHSAQAYAMNDDFSRVLSQQMEYYSN 120

Query: 121 DPNADRINRIKGEMSQVE 138
           DPNADRINR+KGEM QV 
Sbjct: 121 DPNADRINRLKGEMGQVR 138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806654|ref|NP_001242259.1| uncharacterized protein LOC100820063 [Glycine max] gi|255639293|gb|ACU19944.1| unknown [Glycine max]

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/137 (86%), Positives = 127/137 (92%)

Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           M IL++LV RGSVVLAE S T TNASAIARQIL+K PGNND HVSYSQDRYIFHVKRTDG
Sbjct: 1   MGILYALVGRGSVVLAEFSGTTTNASAIARQILEKTPGNNDMHVSYSQDRYIFHVKRTDG 60

Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           LTVLCMADDTAGRRIPFAFLEDIHQ+FV+TYGRAV SAQ YGMN+EFSR+LSQQMEYYS 
Sbjct: 61  LTVLCMADDTAGRRIPFAFLEDIHQKFVRTYGRAVHSAQPYGMNEEFSRILSQQMEYYSS 120

Query: 121 DPNADRINRIKGEMSQV 137
           DPNADRINR+KGEMSQV
Sbjct: 121 DPNADRINRLKGEMSQV 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493899|ref|XP_003617238.1| Vesicle-associated membrane protein 7C [Medicago truncatula] gi|355518573|gb|AET00197.1| Vesicle-associated membrane protein 7C [Medicago truncatula]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 114/137 (83%), Positives = 130/137 (94%)

Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           M IL++LVARG+VVLAE + T TNA+AIARQIL+KIPGNND+HVSYSQDRYIFHVKRTDG
Sbjct: 1   MGILYALVARGTVVLAEFTGTTTNAAAIARQILEKIPGNNDTHVSYSQDRYIFHVKRTDG 60

Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           LTVLCMADD+ GRRIPFAFLE+IHQRFV++YGRAVL+A+AY MNDEFSRVL+QQMEY+S 
Sbjct: 61  LTVLCMADDSVGRRIPFAFLEEIHQRFVRSYGRAVLTAEAYAMNDEFSRVLNQQMEYFSS 120

Query: 121 DPNADRINRIKGEMSQV 137
           DPNADRINR+KGEMSQV
Sbjct: 121 DPNADRINRLKGEMSQV 137

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
TAIR|locus:2147952	221	VAMP713 "AT5G11150" [Arabidops	0.978	0.619	0.826	6.6e-58
TAIR|locus:2059591	219	VAMP712 "vesicle-associated me	0.978	0.625	0.817	1.4e-57
TAIR|locus:2116672	219	VAMP711 "vesicle-associated me	0.978	0.625	0.810	3.6e-57
TAIR|locus:2176342	221	VAMP714 "AT5G22360" [Arabidops	0.978	0.619	0.572	3.6e-41
DICTYBASE|DDB_G0277173	260	vamp7B "vesicle-associated mem	0.978	0.526	0.492	2.7e-29
RGD|621558	220	Vamp7 "vesicle-associated memb	0.978	0.622	0.369	7e-22
ZFIN|ZDB-GENE-040426-1055	220	sybl1 "synaptobrevin-like 1" [	0.978	0.622	0.384	1.5e-21
FB|FBgn0033452	218	CG1599 [Drosophila melanogaste	0.978	0.628	0.355	1.9e-21
UNIPROTKB|E1C278	167	VAMP7 "Vesicle-associated memb	0.978	0.820	0.376	1.9e-21
UNIPROTKB|F1NTP7	178	VAMP7 "Vesicle-associated memb	0.978	0.769	0.376	1.9e-21

TAIR|locus:2147952 VAMP713 "AT5G11150" [Arabidopsis thaliana (taxid:3702)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 114/138 (82%), Positives = 133/138 (96%)

Query:     1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNN-DSHVSYSQDRYIFHVKRTD 59
             MAI+F+LVARG+VVL+E SAT+TNAS+I++QIL+K+PGN+ DSH+SYSQDRYIFHVKRTD
Sbjct:     1 MAIIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTD 60

Query:    60 GLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYS 119
             GLTVLCMAD+TAGR IPFAFL+DIHQRFVKTYGRA+ SAQAY MNDEFSRVLSQQME+YS
Sbjct:    61 GLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRAIHSAQAYSMNDEFSRVLSQQMEFYS 120

Query:   120 DDPNADRINRIKGEMSQV 137
             +DPNADR++RIKGEMSQV
Sbjct:   121 NDPNADRMSRIKGEMSQV 138

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=TAS

GO:0009651 "response to salt stress" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2059591 VAMP712 "vesicle-associated membrane protein 712" [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 112/137 (81%), Positives = 129/137 (94%)

Query:     1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
             M+IL++LVARG+VVLAE S T+TNAS IA+QIL+KIPGN DSHVSYSQDRY+FHVKRTDG
Sbjct:     1 MSILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDG 60

Query:    61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
             LTVLCMAD+ AGRRIPF+FLEDIHQRFV+TYGRA+ SAQAY MNDEFSRVL+QQ+EYYS+
Sbjct:    61 LTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRAIHSAQAYAMNDEFSRVLNQQIEYYSN 120

Query:   121 DPNADRINRIKGEMSQV 137
             DPNAD I+RIKGEM+QV
Sbjct:   121 DPNADTISRIKGEMNQV 137

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=TAS

TAIR|locus:2116672 VAMP711 "vesicle-associated membrane protein 711" [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 111/137 (81%), Positives = 132/137 (96%)

Query:     1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
             MAIL++LVARG+VVL+E +AT+TNAS IA+QIL+K+PG+NDS+VSYSQDRY+FHVKRTDG
Sbjct:     1 MAILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDG 60

Query:    61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
             LTVLCMA++TAGRRIPFAFLEDIHQRFV+TYGRAV +A AY MN+EFSRVLSQQ++YYS+
Sbjct:    61 LTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRAVHTALAYAMNEEFSRVLSQQIDYYSN 120

Query:   121 DPNADRINRIKGEMSQV 137
             DPNADRINRIKGEM+QV
Sbjct:   121 DPNADRINRIKGEMNQV 137

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0046909 "intermembrane transport" evidence=TAS

GO:0009651 "response to salt stress" evidence=RCA;IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010118 "stomatal movement" evidence=IMP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2176342 VAMP714 "AT5G22360" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 79/138 (57%), Positives = 111/138 (80%)

Query:     1 MAILFSLVARGSVVLAECSATATNASAIARQILDKI-PGNNDSHVSYSQDRYIFHVKRTD 59
             MAI++++VARG+VVLAE SA   N  A+ R+IL+K+ P  +D  + +SQDRYIFH+ R+D
Sbjct:     1 MAIVYAVVARGTVVLAEFSAVTGNTGAVVRRILEKLSPEISDERLCFSQDRYIFHILRSD 60

Query:    60 GLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYS 119
             GLT LCMA+DT GRR+PF++LE+IH RF+K YG+   +A AY MNDEFSRVL QQME++S
Sbjct:    61 GLTFLCMANDTFGRRVPFSYLEEIHMRFMKNYGKVAHNAPAYAMNDEFSRVLHQQMEFFS 120

Query:   120 DDPNADRINRIKGEMSQV 137
              +P+ D +NR++GE+S++
Sbjct:   121 SNPSVDTLNRVRGEVSEI 138

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=TAS

GO:0009651 "response to salt stress" evidence=IMP

DICTYBASE|DDB_G0277173 vamp7B "vesicle-associated membrane protein 7B" [Dictyostelium discoideum (taxid:44689)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 68/138 (49%), Positives = 91/138 (65%)

Query:     1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
             M I++SLVARGS VLAE ++T  N   I R+ILD IP N D+ +SY  ++YIFH   +D 
Sbjct:     1 MPIIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPN-DTKMSYVYEKYIFHYLVSDT 59

Query:    61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
             LT LCMAD+  GRRIPF FL+D+  RF   YG    +A AYGMN +FSR L   M++YS+
Sbjct:    60 LTYLCMADEEFGRRIPFTFLDDVKNRFKSMYGDKGKTAIAYGMNSDFSRTLENLMDHYSN 119

Query:   121 DPNADRINRIKGEMSQVE 138
                 D ++R   E+ +V+
Sbjct:   120 TTRVDTMSRTMAEIDEVK 137

GO:0005768 "endosome" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000331 "contractile vacuole" evidence=IDA

GO:0006906 "vesicle fusion" evidence=ISS

GO:0005765 "lysosomal membrane" evidence=IEA;ISS

GO:0031902 "late endosome membrane" evidence=IEA;ISS

GO:0031201 "SNARE complex" evidence=ISS

GO:0008333 "endosome to lysosome transport" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;ISS

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0030658 "transport vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

RGD|621558 Vamp7 "vesicle-associated membrane protein 7" [Rattus norvegicus (taxid:10116)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 51/138 (36%), Positives = 83/138 (60%)

Query:     1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
             MAILF++VARG+ +LA+ +    N   +  QIL KIP  N+  ++YS   Y+FH    D 
Sbjct:     1 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 59

Query:    61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
             +  LC+ DD   R   F FL ++ +RF  TYG    +A  Y MN EFS VL+ Q++++S+
Sbjct:    60 IVYLCITDDDFERSRAFGFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 119

Query:   121 DPNADRINRIKGEMSQVE 138
             + + DR+   + ++ +++
Sbjct:   120 NQSLDRVTETQAQVDELK 137

GO:0005737 "cytoplasm" evidence=ISO

GO:0005765 "lysosomal membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0006906 "vesicle fusion" evidence=ISO;IDA

GO:0006911 "phagocytosis, engulfment" evidence=IDA

GO:0008333 "endosome to lysosome transport" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISO;IDA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IDA

GO:0019905 "syntaxin binding" evidence=IPI

GO:0030054 "cell junction" evidence=IEA

GO:0030658 "transport vesicle membrane" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0031201 "SNARE complex" evidence=IDA

GO:0031902 "late endosome membrane" evidence=IDA

GO:0034197 "triglyceride transport" evidence=IMP

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA;ISO

GO:0043005 "neuron projection" evidence=ISO;ISS

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043308 "eosinophil degranulation" evidence=IDA

GO:0043312 "neutrophil degranulation" evidence=IDA

GO:0045177 "apical part of cell" evidence=IEA;ISO

GO:0045202 "synapse" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=ISO;ISS

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO

GO:1900483 "regulation of protein targeting to vacuolar membrane" evidence=IEA;ISO

ZFIN|ZDB-GENE-040426-1055 sybl1 "synaptobrevin-like 1" [Danio rerio (taxid:7955)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 53/138 (38%), Positives = 81/138 (58%)

Query:     1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
             MAILF++VARGS VLA+ +  + N   +  QIL KIP  N+  ++YS   Y+FH    + 
Sbjct:     1 MAILFAVVARGSTVLAKHACFSGNFLEVTEQILAKIPSENNK-LTYSHGSYLFHYICHER 59

Query:    61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
             +  LC+ DD   R   F FL ++ +RF  TYG    +A  Y MN EFS  L+ QM+++SD
Sbjct:    60 IVYLCITDDEFERSRAFGFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSTLAAQMKHHSD 119

Query:   121 DPNADRINRIKGEMSQVE 138
                +DR+   + ++  ++
Sbjct:   120 PKGSDRLTETQMQVDDLK 137

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

FB|FBgn0033452 CG1599 [Drosophila melanogaster (taxid:7227)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 49/138 (35%), Positives = 85/138 (61%)

Query:     1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
             M IL+S+++RG+ VLA+ +    N + +   I+ +I G ++  ++Y+   Y+ H    + 
Sbjct:     1 MPILYSVISRGTTVLAKFAECVGNFAEVTEHIIGRI-GVHNHKMTYTHGDYLIHYTCENK 59

Query:    61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
             L  +C+ D+   R   F FL DI Q+F++TYG  V +A AY MN EFS++L+QQM Y+S 
Sbjct:    60 LVYMCITDNEFERSRAFLFLADIKQKFIQTYGLQVATAIAYSMNTEFSKILAQQMVYFSQ 119

Query:   121 DPNADRINRIKGEMSQVE 138
                 D I+R+ G++ +++
Sbjct:   120 SREVDTISRVHGQIDELK 137

GO:0006886 "intracellular protein transport" evidence=IC

GO:0005484 "SNAP receptor activity" evidence=NAS

GO:0005886 "plasma membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|E1C278 VAMP7 "Vesicle-associated membrane protein 7" [Gallus gallus (taxid:9031)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 52/138 (37%), Positives = 81/138 (58%)

Query:     1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
             MAILF++VARG+ +LA+ +    N   +  QIL KIP  N+  ++YS   Y+FH    D 
Sbjct:     1 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 59

Query:    61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
             +  LC+ DD   R   F FL +I +RF  TYG    +A  Y MN EFS VL+ Q++Y+S+
Sbjct:    60 IIYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKYHSE 119

Query:   121 DPNADRINRIKGEMSQVE 138
                 D++   + ++ +++
Sbjct:   120 SKGTDQVAETQAQVDELK 137

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:1900483 "regulation of protein targeting to vacuolar membrane" evidence=IEA

UNIPROTKB|F1NTP7 VAMP7 "Vesicle-associated membrane protein 7" [Gallus gallus (taxid:9031)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 52/138 (37%), Positives = 81/138 (58%)

Query:     1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
             MAILF++VARG+ +LA+ +    N   +  QIL KIP  N+  ++YS   Y+FH    D 
Sbjct:     1 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 59

Query:    61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
             +  LC+ DD   R   F FL +I +RF  TYG    +A  Y MN EFS VL+ Q++Y+S+
Sbjct:    60 IIYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKYHSE 119

Query:   121 DPNADRINRIKGEMSQVE 138
                 D++   + ++ +++
Sbjct:   120 SKGTDQVAETQAQVDELK 137

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:1900483 "regulation of protein targeting to vacuolar membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LFP1	VA713_ARATH	No assigned EC number	0.8260	0.9785	0.6199	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	140
pfam13774	82	pfam13774, Longin, Regulated-SNARE-like domain	2e-26

>gnl|CDD|222370 pfam13774, Longin, Regulated-SNARE-like domain

 Score = 94.1 bits (235), Expect = 2e-26
 Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 28  IARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRF 87
           +A+ IL+K+P  N    SY +  Y FH    DGL  LC+AD    RR+ FAFLE+I   F
Sbjct: 1   VAKTILEKLP-PNSPRQSYEEGNYTFHYLVEDGLCYLCIADKEYPRRLAFAFLEEIKDEF 59

Query: 88  VKTYGRA-VLSAQAYGMNDEFSRV 110
           +K YG +   +A  Y    EF   
Sbjct: 60  LKKYGGSQAATASPYAFP-EFDTF 82

Longin is one of the approximately 26 components required for transporting proteins from the ER to the plasma membrane, via the Golgi apparatus. It is necessary for the steps of the transfer from the ER to the Golgi complex. Longins are the only R-SNAREs that are common to all eukaryotes, and they are characterized by a conserved N-terminal domain with a profilin-like fold called a longin domain. Length = 82

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
KOG0859	217	consensus Synaptobrevin/VAMP-like protein [Intrace	100.0
KOG0862	216	consensus Synaptobrevin/VAMP-like protein SEC22 [I	99.96
PF13774	83	Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3	99.92
KOG0861	198	consensus SNARE protein YKT6, synaptobrevin/VAMP s	99.9
COG5143	190	SNC1 Synaptobrevin/VAMP-like protein [Intracellula	99.62
PF04086	279	SRP-alpha_N: Signal recognition particle, alpha su	96.65
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	94.13
KOG0781	587	consensus Signal recognition particle receptor, al	93.9
KOG0938	446	consensus Adaptor complexes medium subunit family	93.86
PF04628	132	Sedlin_N: Sedlin, N-terminal conserved region; Int	91.42
PF09426	141	Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro	91.41
PF04099	142	Sybindin: Sybindin-like family ; InterPro: IPR0072	86.86
PF03164	415	Mon1: Trafficking protein Mon1; InterPro: IPR00435	81.51

>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.4e-46  Score=258.11  Aligned_cols=139  Identities=50%  Similarity=0.830  Sum_probs=135.7

Q ss_pred             CceEEEEEEeCCeeEeeecCCCCCHHHHHHHHhccCCCCCCCceEEeeCCeEEEEEEeCCeEEEEEecCCCCcccHHHHH
Q 032448            1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFL   80 (140)
Q Consensus         1 M~I~Ya~Var~~~iL~e~~~~~~~~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~citd~~~~~~~af~fL   80 (140)
                      |+|+|++||||++|||||++.+|||..++..+|+++|+.+++|.+|..|+|+|||+++||++||||+|++.++++||.||
T Consensus         1 m~iiYs~VARGTvvLaeft~~~gNf~sva~qiL~klp~~~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaFL   80 (217)
T KOG0859|consen    1 MSIIYSFVARGTVILAEFTEFSGNFSSIAAQILQKLPSSSNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAFL   80 (217)
T ss_pred             CceeEEEEecceEEEEeeeeccCCHHHHHHHHHHhCCCCCCCceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHHH
Confidence            89999999999999999999999999999999999998667899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccccCCCccchhhHHHHHHHHHHhcCCchhhHHHHHHhhhhhhcc
Q 032448           81 EDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVEM  139 (140)
Q Consensus        81 ~~i~~~F~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~~dkl~~l~~~l~evk~  139 (140)
                      ++|+.+|.+.||....++.+|++|++|++.|++.|++|.++|+.|+|++++.|++|||.
T Consensus        81 e~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~id~lskvkaqv~evk~  139 (217)
T KOG0859|consen   81 ERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPEISKLAKVKAQVTEVKG  139 (217)
T ss_pred             HHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHH
Confidence            99999999999988999999999999999999999999999999999999999999984

>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.6e-29  Score=176.30  Aligned_cols=135  Identities=24%  Similarity=0.521  Sum_probs=122.6

Q ss_pred             eEEEEEEeC--CeeEeeecC-C--CCC----HHHHHHHHhccCCCCCCCceEEeeCCeEEEEEEeCCeEEEEEecCCCCc
Q 032448            3 ILFSLVARG--SVVLAECSA-T--ATN----ASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGR   73 (140)
Q Consensus         3 I~Ya~Var~--~~iL~e~~~-~--~~~----~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~citd~~~~~   73 (140)
                      |++++|+|.  ++|||...+ .  +|+    .++.++.+++++.+.++.|++++.|.|.|||++++|+||+||||+.||+
T Consensus         2 i~~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s~~r~Sietg~f~fHfli~~~Vcylvicd~~yP~   81 (216)
T KOG0862|consen    2 ILLTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQSPTRCSIETGPFVFHFLIESGVCYLVICDKSYPR   81 (216)
T ss_pred             ceeEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCCCcccccccCCeEEEEEecCCEEEEEEecCCCcH
Confidence            789999995  799998775 2  233    4799999999999867999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhhcccccc--ccCCCccchhhHHHHHHHHHHhcCCchhhHHHHHHhhhhhhc
Q 032448           74 RIPFAFLEDIHQRFVKTYGRAVL--SAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVE  138 (140)
Q Consensus        74 ~~af~fL~~i~~~F~~~~~~~~~--~~~~~~~~~~F~~~l~~~~~~yn~~~~~dkl~~l~~~l~evk  138 (140)
                      +.||+||++|.++|.+.|+....  ..+||++. +|++.|++..++|||++..+.+.+++.++.+|+
T Consensus        82 kLAF~YLedL~~EF~~~~~~~~~~~~~RPY~Fi-eFD~~IQk~Kk~ynd~r~~~n~~~~n~el~~v~  147 (216)
T KOG0862|consen   82 KLAFSYLEDLAQEFDKSYGKNIIQPASRPYAFI-EFDTFIQKTKKRYNDTRSQRNLLKLNQELQDVQ  147 (216)
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCccCCCeeEE-ehhHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            99999999999999999997643  57999997 999999999999999988899999999998886

>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D

Probab=99.92  E-value=2.3e-24  Score=134.49  Aligned_cols=81  Identities=43%  Similarity=0.838  Sum_probs=73.8

Q ss_pred             HHHHHhccCCCCCCCceEEeeCCeEEEEEEeCCeEEEEEecCCCCcccHHHHHHHHHHHHHhhcc-ccccccCCCccchh
Q 032448           28 IARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG-RAVLSAQAYGMNDE  106 (140)
Q Consensus        28 ~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~citd~~~~~~~af~fL~~i~~~F~~~~~-~~~~~~~~~~~~~~  106 (140)
                      +|++||++++++.++|.+++.|+|.||+++++|++||||||+++|+|+||.||++|+++|..+|+ +++.++.+|++ .+
T Consensus         1 ~a~~il~~i~~~~~~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~~~~~~a~~~~~-~~   79 (83)
T PF13774_consen    1 QARKILKRIPPNGNSKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGGDQIKSASPYSF-KE   79 (83)
T ss_dssp             HHHHHHHTS-TTSESEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTTTTTTTSTTTTT-HH
T ss_pred             CHHHHHHhcCCCCCCeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCcchhcccCCcch-hh
Confidence            58999999996445899999999999999999999999999999999999999999999999999 78889889999 79


Q ss_pred             hHH
Q 032448          107 FSR  109 (140)
Q Consensus       107 F~~  109 (140)
                      |++
T Consensus        80 F~~   82 (83)
T PF13774_consen   80 FDS   82 (83)
T ss_dssp             HHH
T ss_pred             cCC
Confidence            986

...

>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2.3e-23  Score=142.48  Aligned_cols=134  Identities=19%  Similarity=0.334  Sum_probs=111.4

Q ss_pred             CceEEEEEEeCC----eeEeeecCCC-------CC----HHHHHHHHhccCCCCCCCceEEeeCCeEEE-EEEeCCeEEE
Q 032448            1 MAILFSLVARGS----VVLAECSATA-------TN----ASAIARQILDKIPGNNDSHVSYSQDRYIFH-VKRTDGLTVL   64 (140)
Q Consensus         1 M~I~Ya~Var~~----~iL~e~~~~~-------~~----~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h-~l~~~~~~~~   64 (140)
                      |.|++..|.+.+    .+|+.-++.+       ++    +..+++.+.+|.+|  +.|+++++++|.+| |.+.+|++++
T Consensus         1 Mki~sl~V~~~~~~~~~ll~~a~dls~FsfFqRssV~Efm~F~sktvaeRt~~--g~rqsvk~~~Y~~h~yvrndgL~~V   78 (198)
T KOG0861|consen    1 MKIYSLSVLHKGTSDVKLLKTASDLSSFSFFQRSSVQEFMTFISKTVAERTGP--GQRQSVKHEEYLVHVYVRNDGLCGV   78 (198)
T ss_pred             CceEEEEEEeeCCcchhhhhhhcccccccceeeccHHHHHHHHHHHHHHhcCc--ccccccccceeEEEEEEecCCeeEE
Confidence            888998888873    5666544322       22    35788999999998  99999999999999 7777899999


Q ss_pred             EEecCCCCcccHHHHHHHHHHHHHhhc-cccccccCCCccchhhHHHHHHHHHHhcCCchhhHHHHHHhhhhhhcc
Q 032448           65 CMADDTAGRRIPFAFLEDIHQRFVKTY-GRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVEM  139 (140)
Q Consensus        65 citd~~~~~~~af~fL~~i~~~F~~~~-~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~~dkl~~l~~~l~evk~  139 (140)
                      +++|.+||.|+||.+|++|.++|..+. +.+|+...+-..  . .|.|..++.+|+||.++|+|.+||+||||+|.
T Consensus        79 ~~~D~eYP~rvA~tLL~kvld~~~~k~~~~~W~~~~~~~~--~-~~~L~~~l~kyqdP~ead~l~kvQ~EldETKi  151 (198)
T KOG0861|consen   79 LIADDEYPVRVAFTLLNKVLDEFTTKVPATQWPVGETADL--S-YPYLDTLLSKYQDPAEADPLLKVQNELDETKI  151 (198)
T ss_pred             EEecCcCchhHHHHHHHHHHHHHhhcCcccccCcCCCcCC--C-chhHHHHHHHhcChhhhChHHHHHHHHHHHHH
Confidence            999999999999999999999997665 477874322222  3 58899999999999999999999999999984

>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]

Probab=99.62  E-value=4.2e-15  Score=104.06  Aligned_cols=135  Identities=15%  Similarity=0.348  Sum_probs=104.5

Q ss_pred             CceEEEEEEeCC--eeEeeec-CCCCCH--HHHHHHHhccCCCCCCCceEEeeCCeEEEEEEe-CCeEEEEEecCCCCcc
Q 032448            1 MAILFSLVARGS--VVLAECS-ATATNA--SAIARQILDKIPGNNDSHVSYSQDRYIFHVKRT-DGLTVLCMADDTAGRR   74 (140)
Q Consensus         1 M~I~Ya~Var~~--~iL~e~~-~~~~~~--~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~-~~~~~~citd~~~~~~   74 (140)
                      |.++|..+..+.  .+|++-- ..+..|  ...+..+|.++.|...++.+++.++|.|||... .|++|.|+|+.++|.+
T Consensus         1 i~s~~~~~~~~~~~~~~~~~~s~~~~~ff~~~~v~~~l~~~~~~~a~~~~ies~~~~~~~~~~s~gi~y~~~~~~e~p~~   80 (190)
T COG5143           1 IASISLFRVKGEPLRTLSDAESLSSFSFFHRSKVKEVLRFLSKTSASRASIESGDYFFHYLKMSSGIVYVPISDKEYPNK   80 (190)
T ss_pred             CceEEEEeecCCcceeeccccccCcccccccchHHHHHHHhcccccchhccccCceEEEEEecCCCceeEEecccccchh
Confidence            567777777773  3344322 222222  578888888888766778999999999998766 5999999999999999


Q ss_pred             cHHHHHHHHHHHHHhhcc-ccccc-cCCCccchhhHHHHHHHHHHhcCCchhhHHHHHHhhhhhhcc
Q 032448           75 IPFAFLEDIHQRFVKTYG-RAVLS-AQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVEM  139 (140)
Q Consensus        75 ~af~fL~~i~~~F~~~~~-~~~~~-~~~~~~~~~F~~~l~~~~~~yn~~~~~dkl~~l~~~l~evk~  139 (140)
                      .||+.++++..+|....+ .+|.. ..++.+. +|++.+++   .|+++..+|++.+++.++++||.
T Consensus        81 la~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~-~~d~~~e~---~y~d~s~~D~~d~l~~el~e~K~  143 (190)
T COG5143          81 LAYGYLNSIATEFLKSSALEQLIDDTVGIMRV-NIDKVIEK---GYRDPSIQDKLDQLQQELEETKR  143 (190)
T ss_pred             hhhHHHHhhccHhhhhhhHhhcccCccchhhh-hHHHHHHh---hcCCchhhhHHHHHHHHHHHHHH
Confidence            999999999999998887 34433 3444443 77777777   39999999999999999999973

>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=96.65  E-value=0.013  Score=44.11  Aligned_cols=67  Identities=21%  Similarity=0.350  Sum_probs=43.1

Q ss_pred             HHHHHHHHhccCCCCCCCceEEeeCCeEEEEEEeC--CeEEEEEecCCCCcccHHHHHHHHHHHHHhhcccc
Q 032448           25 ASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTD--GLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRA   94 (140)
Q Consensus        25 ~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~--~~~~~citd~~~~~~~af~fL~~i~~~F~~~~~~~   94 (140)
                      ...+++.||-.=.   ....+|++++|..+|...|  +|+|++|=.+-..-...=.||+.|+..|...|+..
T Consensus         4 in~LI~~vlleeR---~~~~~~~~d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~   72 (279)
T PF04086_consen    4 INALIRDVLLEER---SGNSSFTYDNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQ   72 (279)
T ss_dssp             HHHHHHHTGGG----------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHhheeec---cCCCceeEcCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHH
Confidence            3567777774411   3456689999999988775  89999998888876666699999999999999865

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.13  E-value=1.1  Score=30.02  Aligned_cols=79  Identities=14%  Similarity=0.282  Sum_probs=56.3

Q ss_pred             CCeeEeeecCCCCC------HHHHHHHHhccCCCCCCCceEEeeCCeEEEEEEeCCeEEEEEecCCCCcccHHHHHHHHH
Q 032448           11 GSVVLAECSATATN------ASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIH   84 (140)
Q Consensus        11 ~~~iL~e~~~~~~~------~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~citd~~~~~~~af~fL~~i~   84 (140)
                      |..+++-|-.....      ++.+.+.+..+-+   ..--.+..+++.+-|..-+++.++++++.+...-....||+.+.
T Consensus        12 G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~~~e~l~~~v   88 (141)
T PF01217_consen   12 GKRILSKYYRDVSEEERQKLFEKFIKKKSSRNS---KQSPIFEHDNYRIVYKRYSDLYFVVVGDENENELLLLEFLHRLV   88 (141)
T ss_dssp             SEEEEEEESSTSTSHHHHHHHHHHHHHHHTSSS---SSTSEEEETTEEEEEEEETTEEEEEEESSTSBHHHHHHHHHHHH
T ss_pred             CCEEEehhcCCccHHHHHHHHHHHHHHHHhccc---ccceeeecccceeeeEeeccEEEEEEeecccchHHHHHHHHHhh
Confidence            34677766432211      3444455554422   22344678999988988999999999999999889999999999


Q ss_pred             HHHHhhcc
Q 032448           85 QRFVKTYG   92 (140)
Q Consensus        85 ~~F~~~~~   92 (140)
                      +-+..-++
T Consensus        89 ~~l~~~~~   96 (141)
T PF01217_consen   89 EVLDDYFG   96 (141)
T ss_dssp             HHHHHHHS
T ss_pred             hhhhhhhc
Confidence            88877666

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.90  E-value=0.7  Score=37.69  Aligned_cols=88  Identities=17%  Similarity=0.231  Sum_probs=66.3

Q ss_pred             eEEEEEEeCCeeEeeecCCCCCH----HHHHHHHhccCCCCCCCceEEeeCCeEEEEEEe--CCeEEEEEecCCCCcccH
Q 032448            3 ILFSLVARGSVVLAECSATATNA----SAIARQILDKIPGNNDSHVSYSQDRYIFHVKRT--DGLTVLCMADDTAGRRIP   76 (140)
Q Consensus         3 I~Ya~Var~~~iL~e~~~~~~~~----~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~--~~~~~~citd~~~~~~~a   76 (140)
                      =.++...+|+.||+-|....-+|    ..+++.+|-.=.   .+--+++.+.|+.-|-.+  -+++|+|+-.+-.--..+
T Consensus         3 d~faIFtkgG~vLw~~~~~~~~~~~~in~lI~~~ll~er---~~~~~~~~~~yTlk~q~~N~~~lvfvvvfqki~~L~yv   79 (587)
T KOG0781|consen    3 DQFAIFTKGGLVLWCYQEVGDNLKGPINALIRSVLLSER---GGVNSFTFEAYTLKYQLDNQYSLVFVVVFQKILTLTYV   79 (587)
T ss_pred             ceeeeecCCcEEEEEecccchhccchHHHHHHHHHHHhh---cCcccCchhheeEeeeecCCccEEEEEEEeccchhhhH
Confidence            36789999999999998765444    456666653312   222337888898877665  489999998888877778


Q ss_pred             HHHHHHHHHHHHhhccc
Q 032448           77 FAFLEDIHQRFVKTYGR   93 (140)
Q Consensus        77 f~fL~~i~~~F~~~~~~   93 (140)
                      -.+|+++.+.|...|..
T Consensus        80 ~~ll~~v~~~f~e~~~~   96 (587)
T KOG0781|consen   80 DKLLNDVLNLFREKYDT   96 (587)
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            89999999999998863

>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.86  E-value=2.5  Score=33.01  Aligned_cols=110  Identities=17%  Similarity=0.257  Sum_probs=73.6

Q ss_pred             EEEEEEeCCeeEeeec--CCCCCHHHHHHHH-hccCCCCCCCc-eEEeeCCeEEEEEEeCCeEEEEEecCCCCcccHHHH
Q 032448            4 LFSLVARGSVVLAECS--ATATNASAIARQI-LDKIPGNNDSH-VSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAF   79 (140)
Q Consensus         4 ~Ya~Var~~~iL~e~~--~~~~~~~~~~~~v-l~~i~~~~~~k-~~~~~~~~~~h~l~~~~~~~~citd~~~~~~~af~f   79 (140)
                      +|..=.||.++++-.=  +-.++..++-|-- +...    +.| -..+.|+-+||+...+++-.++||.......+.|.|
T Consensus         5 lfi~n~rGevlink~fr~dlkrs~~diFRv~vi~n~----d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nva~v~eF   80 (446)
T KOG0938|consen    5 LFIYNLRGEVLINKTFRDDLKRSIVDIFRVQVINNL----DVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANVAAVFEF   80 (446)
T ss_pred             EEEEeccCcEEEehhhhhhhhhhHHHHHHHhhhhcc----ccCCCeeEecceeEEEEeeccEEEEEEecCCCchhhHHHH
Confidence            5566678888887542  2345655554433 2221    223 234689999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccccccccCCCccchhhHHHHHHHHHHhc
Q 032448           80 LEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYS  119 (140)
Q Consensus        80 L~~i~~~F~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn  119 (140)
                      |..+-+.+..-+|...+.+....+.-. -..|.++|. |-
T Consensus        81 l~kl~avm~aYfgk~~Eeaiknnf~lI-~ElLDemld-~G  118 (446)
T KOG0938|consen   81 LYKLDAVMNAYFGKDREEAIKNNFVLI-YELLDEMLD-FG  118 (446)
T ss_pred             HHHHHHHHHHHhcccchhhhhhceEeH-HHHHHHHHh-cC
Confidence            999999998877744444433333212 234556555 53

>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport

Probab=91.42  E-value=2.1  Score=28.57  Aligned_cols=109  Identities=10%  Similarity=0.136  Sum_probs=58.1

Q ss_pred             EEEeCCeeEeeecCCC---CC-------HHHH---HHHHhccCCCC-C---CCceEEeeCCeEEE-EEEeCCeEEEEEec
Q 032448            7 LVARGSVVLAECSATA---TN-------ASAI---ARQILDKIPGN-N---DSHVSYSQDRYIFH-VKRTDGLTVLCMAD   68 (140)
Q Consensus         7 ~Var~~~iL~e~~~~~---~~-------~~~~---~~~vl~~i~~~-~---~~k~~~~~~~~~~h-~l~~~~~~~~citd   68 (140)
                      .|++.+.+|.+.+..+   ..       +..+   +..+++..-+. .   .=+.....+++..+ |+...++-|+.+++
T Consensus         1 IIg~~n~PLy~~~~~~~~~~~~~~~~~l~~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~~~   80 (132)
T PF04628_consen    1 IIGPNNNPLYIRSFPSEKESSSSDARHLYQFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLVHD   80 (132)
T ss_dssp             EE-TTS-EEEEEEE--ST-CGHHHHHHHHHHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEEEC
T ss_pred             CCCCCCcceEEEecCCCcccccchHHHHHHHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEEEe
Confidence            4788888888776322   11       3333   33444332221 1   11344566887766 88888999999998


Q ss_pred             ---CCCCcccHHHHHHHHHHHHHhhcccccccc-CCCccchhhHHHHHHHHH
Q 032448           69 ---DTAGRRIPFAFLEDIHQRFVKTYGRAVLSA-QAYGMNDEFSRVLSQQME  116 (140)
Q Consensus        69 ---~~~~~~~af~fL~~i~~~F~~~~~~~~~~~-~~~~~~~~F~~~l~~~~~  116 (140)
                         ........-.|+.+|+..|....-+-.... .+.. ...|+..++++.+
T Consensus        81 ~~~~~~~d~~ik~fF~~vh~~Y~~~~~NPF~~~~~~I~-S~~Fd~~v~~l~~  131 (132)
T PF04628_consen   81 MSDNSIRDEDIKQFFKEVHELYVKALCNPFYQPGTPIK-SPKFDSRVRALAK  131 (132)
T ss_dssp             GGG-S--HHHHHHHHHHHHHHHHHHHTSTTCGCT-HHH-HHHHHHHHHHHHH
T ss_pred             cccCCcchHHHHHHHHHHHHHHHHHccCCCCCCCCCcC-CHHHHHHHHHHhc
Confidence               445556678888888888876443221110 1111 2467777777665

Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.

>PF09426 Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro: IPR019005 This entry represents the N-terminal domain of vacuolar R-SNARE Nyv1, which adopts a longin fold []

Probab=91.41  E-value=1  Score=30.20  Aligned_cols=60  Identities=17%  Similarity=0.287  Sum_probs=40.8

Q ss_pred             HHHHHHHhccCCCCCCCceEEe----eCCeEEEEEE---eCCeEEEEEecCCCCcccHHHHHHHHHH
Q 032448           26 SAIARQILDKIPGNNDSHVSYS----QDRYIFHVKR---TDGLTVLCMADDTAGRRIPFAFLEDIHQ   85 (140)
Q Consensus        26 ~~~~~~vl~~i~~~~~~k~~~~----~~~~~~h~l~---~~~~~~~citd~~~~~~~af~fL~~i~~   85 (140)
                      +.+-.-|++++-|-.++|.+=.    .+||-++|..   +++-+++|.|..+.|+-.+-..|.+++.
T Consensus        44 ~Li~dmVlPkVV~v~GNKVTK~S~~lIDGyDCYYTT~~~d~~~vlVCFt~~~vPKILPiRlLSeLK~  110 (141)
T PF09426_consen   44 KLIHDMVLPKVVPVEGNKVTKMSMHLIDGYDCYYTTEDNDDNKVLVCFTRVDVPKILPIRLLSELKG  110 (141)
T ss_dssp             HHHHHTTGGG----SS-SSEE--S--SSSEEEEE---SS-TTEEEEEEEETTS-SSHHHHHHHHHTT
T ss_pred             HHHhhccccceEEccCCeEEEEEeecccccceeeecccCCCCeEEEEEEecCCcceecHHHHHhhcc
Confidence            3455667788887666665532    4899999887   4789999999999999999999999875

Vacuolar v-SNARE is required for docking and is only involved in homotypic vacuole fusion. Nyv1 is required for Ca(2+) efflux from the vacuolar lumen, a required signal for subsequent membrane fusion events, by inhibiting vacuolar Ca(2+)-ATPase PMC1 and promoting Ca(2+) release when forming trans-SNARE assemblies during the docking step. In yeast, the N-terminal domain of Nyv1 is sufficient to direct the transport of Nyv1 to limiting membrane of the vacuole []. ; PDB: 2FZ0_A.

>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses

Probab=86.86  E-value=7.6  Score=26.29  Aligned_cols=74  Identities=16%  Similarity=0.205  Sum_probs=41.4

Q ss_pred             CCceEEeeCCeEEEEEE-eCCeEEEEEecCCCCcccHHHHHHHHHHHHHhhc-ccc-ccccCCCccchhhHHHHHHHHH
Q 032448           41 DSHVSYSQDRYIFHVKR-TDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTY-GRA-VLSAQAYGMNDEFSRVLSQQME  116 (140)
Q Consensus        41 ~~k~~~~~~~~~~h~l~-~~~~~~~citd~~~~~~~af~fL~~i~~~F~~~~-~~~-~~~~~~~~~~~~F~~~l~~~~~  116 (140)
                      .+-.+++.+.|..|+.- --|+-|+++||...+. ..=.+++.+..-|...- .+- .....|-. +..|+..|.++++
T Consensus        65 ~g~~~~~T~~yklh~~eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~dyV~KNPfy~~~~pI~-~~lF~~~l~~~~~  141 (142)
T PF04099_consen   65 SGFESFETDTYKLHCFETPTGLKFVLITDPNVPS-LRDELLRIYYELYVDYVVKNPFYSLEMPIR-CELFDTKLDQYVK  141 (142)
T ss_dssp             -SEEEEEESS-EEEEEE-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHHHHHHS-TTS-TTS-----HHHHHHHHHHHH
T ss_pred             eeEEEEEeCCEEEEEEEcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHHHHHhhCCCCCCCCcEe-hHHHHHHHHHHHh
Confidence            56778899999999765 4899999999999863 33344555555444321 111 11122322 3577777777664

Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.

>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain

Probab=81.51  E-value=17  Score=29.08  Aligned_cols=87  Identities=7%  Similarity=0.043  Sum_probs=60.5

Q ss_pred             EEEEeCCeeEeeecCCC---CCHHHHHHHHhccCCCCCCCceEEeeCCeEEEEEEeCCeEEEEEecCCCCcccHHHHHHH
Q 032448            6 SLVARGSVVLAECSATA---TNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLED   82 (140)
Q Consensus         6 a~Var~~~iL~e~~~~~---~~~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~citd~~~~~~~af~fL~~   82 (140)
                      .+....++++...-..+   ..+..+...++.-.....+.-..+..|+..|.|+..+.+.++||+..+.+...--.-|+-
T Consensus        15 fIlS~AGKPIysr~G~e~~l~~~~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l~~qL~~   94 (415)
T PF03164_consen   15 FILSSAGKPIYSRYGDEDKLSSLMGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQLRKQLDY   94 (415)
T ss_pred             EEECCCCceeEEecCChHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHHHHHHHHH
Confidence            34445566665443222   125566666666554333555678889999999999999999999999998777788888


Q ss_pred             HHHHHHhhcc
Q 032448           83 IHQRFVKTYG   92 (140)
Q Consensus        83 i~~~F~~~~~   92 (140)
                      |.........
T Consensus        95 ly~qils~lt  104 (415)
T PF03164_consen   95 LYSQILSILT  104 (415)
T ss_pred             HHHHHHHhcc
Confidence            8777666443

In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	140
4b93_A	189	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-23
2dmw_A	131	Solution Structure Of The Longin Domain Of Synaptob		2e-22
4afi_A	173	Complex Between Vamp7 Longin Domain And Fragment Of		6e-22
2vx8_A	169	Vamp7 Longin Domain Hrb Peptide Complex Length = 16		1e-20

>pdb|4B93|A Chain A, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 189

Iteration: 1
 Score =  104 bits (259), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           MAILF++VARG+ +LA+ +    N   +  QIL KIP  N+  ++YS   Y+FH    D 
Sbjct: 2   MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 60
Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           +  LC+ DD   R   F+FL ++ +RF  TYG    +A  Y MN EFS VL+ Q++++S+
Sbjct: 61  IVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 120
Query: 121 DPNADRINRIKGEMSQVE 138
           + + D++   + ++ +++
Sbjct: 121 NKSLDKVMETQAQVDELK 138

>pdb|2DMW|A Chain A, Solution Structure Of The Longin Domain Of Synaptobrevin- Like Protein 1 Length = 131

Iteration: 1
 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           MAILF++VARG+ +LA+ +    N   +  QIL KIP  N+  ++YS   Y+FH    D 
Sbjct: 8   MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 66
Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           +  LC+ DD   R   F FL +I +RF  TYG    +A  Y MN EFS VL+ Q++++S 
Sbjct: 67  IVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTAPPYAMNSEFSSVLAAQLKHHSS 126
Query: 121 DPNA 124
            P++
Sbjct: 127 GPSS 130

>pdb|4AFI|A Chain A, Complex Between Vamp7 Longin Domain And Fragment Of Delta- Adaptin From Ap3 Length = 173

Iteration: 1
 Score = 99.4 bits (246), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 49/121 (40%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           MAILF++VARG+ +LA+ +    N   +  QIL KIP  N+  ++YS   Y+FH    D 
Sbjct: 54  MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 112
Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           +  LC+ DD   R   F+FL ++ +RF  TYG    +A  Y MN EFS VL+ Q++++S+
Sbjct: 113 IVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 172
Query: 121 D 121
           +
Sbjct: 173 N 173

>pdb|2VX8|A Chain A, Vamp7 Longin Domain Hrb Peptide Complex Length = 169

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           MAILF++VARG+ +LA+ +    N   +  QIL KIP  N+  ++YS   Y+FH    D 
Sbjct: 44  MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNK-LTYSHGNYLFHYICQDR 102
Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQME 116
           +  LC+ DD   R   F+FL ++ +RF  TYG    +A  Y MN EFS VL+ Q++
Sbjct: 103 IVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLK 158

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	140
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	1e-42
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	5e-40
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	8e-27
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	2e-16
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	3e-07

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens} Length = 173

 Score =  137 bits (347), Expect = 1e-42
 Identities = 48/121 (39%), Positives = 75/121 (61%), Gaps = 1/121 (0%)

Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           MAILF++VARG+ +LA+ +    N   +  QIL KIP + ++ ++YS   Y+FH    D 
Sbjct: 54  MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIP-SENNKLTYSHGNYLFHYICQDR 112

Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           +  LC+ DD   R   F+FL ++ +RF  TYG    +A  Y MN EFS VL+ Q++++S+
Sbjct: 113 IVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 172

Query: 121 D 121
           +
Sbjct: 173 N 173

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A Length = 169

 Score =  131 bits (329), Expect = 5e-40
 Identities = 48/123 (39%), Positives = 76/123 (61%), Gaps = 1/123 (0%)

Query: 1   MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDG 60
           MAILF++VARG+ +LA+ +    N   +  QIL KIP + ++ ++YS   Y+FH    D 
Sbjct: 44  MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIP-SENNKLTYSHGNYLFHYICQDR 102

Query: 61  LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD 120
           +  LC+ DD   R   F+FL ++ +RF  TYG    +A  Y MN EFS VL+ Q++++S+
Sbjct: 103 IVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE 162

Query: 121 DPN 123
           + +
Sbjct: 163 NHH 165

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A Length = 196

 Score = 98.4 bits (244), Expect = 8e-27
 Identities = 27/144 (18%), Positives = 59/144 (40%), Gaps = 9/144 (6%)

Query: 3   ILFSLVARGSVVLAECSATATNASA---------IARQILDKIPGNNDSHVSYSQDRYIF 53
           +L +++AR +  L   ++   +  +          A+Q+  K+   + +  +       F
Sbjct: 3   VLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTF 62

Query: 54  HVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQ 113
           H     G+  L + +    +++ FA+LED+H  F + +G+ V +        EF   + +
Sbjct: 63  HYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQK 122

Query: 114 QMEYYSDDPNADRINRIKGEMSQV 137
             + Y D      +  I  E+  V
Sbjct: 123 TKKLYIDSRARRNLGSINTELQDV 146

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus} Length = 199

 Score = 71.0 bits (173), Expect = 2e-16
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 13/134 (9%)

Query: 5   FSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVK-RTDGLTV 63
           FS   R SV                 Q++ +      S  S  +  Y+ HV  R+D L  
Sbjct: 29  FSFFQRSSV---------QEFMTFTSQLIVERS-AKGSRASVKEQEYLCHVYVRSDSLAG 78

Query: 64  LCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPN 123
           + +AD     R+ F  LE +   F K   R      +          L   +  Y +   
Sbjct: 79  VVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSP--ATIHYTALDGHLSRYQNPRE 136

Query: 124 ADRINRIKGEMSQV 137
           AD +++++ E+ + 
Sbjct: 137 ADPMSKVQAELDET 150

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A Length = 144

 Score = 45.8 bits (108), Expect = 3e-07
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 3/99 (3%)

Query: 28  IARQILDKIPGNNDSHVSYSQDRYIFHV-KRTDGLTVLCMADDTAGRRIPFAFLEDIHQR 86
            A  +  +         S  +  YI HV  R++G+  + + D     R  +  L  I   
Sbjct: 47  FAETVASRTGAG--QRQSIEEGNYIGHVYARSEGICGVLITDKEYPVRPAYTLLNKILDE 104

Query: 87  FVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNAD 125
           ++  + +   +      +    + L   +  Y D   AD
Sbjct: 105 YLVAHPKEEWADVTETNDALKMKQLDTYISKYQDPSQAD 143

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	140
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	100.0
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	100.0
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	100.0
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	100.0
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	99.98
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	99.96
2fh5_A	185	Signal recognition particle receptor alpha subunit	98.1
2fz0_A	149	R-snare NYV1P, V-snare component of the vacuolar s	94.68
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	94.45
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	93.88
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	93.49
2j3w_A	142	Sedlin, trafficking protein particle complex prote	93.48
1gl2_A	65	Endobrevin; membrane protein, membrane fusion prot	92.72
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	91.13
1l4a_A	80	Synaptobrevin; snare, snare complex, membrane fusi	89.83
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	89.46
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	88.71
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	87.34
1sfc_A	96	VAMP 2, protein (synaptobrevin 2); membrane fusion	84.03
3cue_C	159	Transport protein particle 18 kDa subunit; membran	82.95
3cue_A	219	Transport protein particle 23 kDa subunit; membran	82.42
3fie_C	38	Fragment of vesicle-associated membrane protein 2;	80.42

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=100.00  E-value=2.1e-46  Score=265.44  Aligned_cols=138  Identities=36%  Similarity=0.641  Sum_probs=127.3

Q ss_pred             CceEEEEEEeCCeeEeeecCCCCCHHHHHHHHhccCCCCCCCceEEeeCCeEEEEEEeCCeEEEEEecCCCCcccHHHHH
Q 032448            1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFL   80 (140)
Q Consensus         1 M~I~Ya~Var~~~iL~e~~~~~~~~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~citd~~~~~~~af~fL   80 (140)
                      |||+|||||||++|||||+..+|||..+++++|+++|+ .++|++++.|+|+|||++++|++|+||||++||+++||.||
T Consensus         2 M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip~-~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL   80 (189)
T 4b93_A            2 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL   80 (189)
T ss_dssp             CSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCCS-SSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred             CceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCCC-CCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHH
Confidence            99999999999999999999999999999999999996 78999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccccCCCccchhhHHHHHHHHHHhcCCchhhHHHHHHhhhhhhcc
Q 032448           81 EDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVEM  139 (140)
Q Consensus        81 ~~i~~~F~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~~~dkl~~l~~~l~evk~  139 (140)
                      ++|+++|...|+..+.++.|++++.+|.+.|+++|++|+++++.|+|.+++.+|+||++
T Consensus        81 ~~i~~eF~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~d~~~~d~l~~~~~~l~ev~~  139 (189)
T 4b93_A           81 NEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKSLDKVMETQAQVDELKG  139 (189)
T ss_dssp             HHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHHHCC-------CCHHHHHTTTT
T ss_pred             HHHHHHHHhhccccccccCCccccchhhHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence            99999999999988888999999999999999999999999999999999999999985

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}

Probab=100.00  E-value=7.3e-43  Score=243.31  Aligned_cols=119  Identities=40%  Similarity=0.697  Sum_probs=116.1

Q ss_pred             CceEEEEEEeCCeeEeeecCCCCCHHHHHHHHhccCCCCCCCceEEeeCCeEEEEEEeCCeEEEEEecCCCCcccHHHHH
Q 032448            1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFL   80 (140)
Q Consensus         1 M~I~Ya~Var~~~iL~e~~~~~~~~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~citd~~~~~~~af~fL   80 (140)
                      |+|+|||||||++|||||+..+|||..+++++|+++|+ .++|++++.|+|+|||++++|++|+||||+++|+++||+||
T Consensus        54 M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip~-~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FL  132 (173)
T 4afi_A           54 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL  132 (173)
T ss_dssp             CCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSCS-SSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred             ccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCCC-CCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHH
Confidence            99999999999999999999999999999999999996 68999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccccCCCccchhhHHHHHHHHHHhcC
Q 032448           81 EDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSD  120 (140)
Q Consensus        81 ~~i~~~F~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~  120 (140)
                      ++|+++|.++|+.+|.+++||+|+++|+++|+++|++||+
T Consensus       133 edI~~eF~~~yg~~~~ta~pya~~~eF~~~L~~~M~~yn~  172 (173)
T 4afi_A          133 NEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSE  172 (173)
T ss_dssp             HHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhchhhhhccCcchhHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999986

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=100.00  E-value=1.2e-38  Score=226.97  Aligned_cols=136  Identities=21%  Similarity=0.428  Sum_probs=110.0

Q ss_pred             eEEEEEEeC--CeeEeeecCCC---CC----HHHHHHHHhccCCCCCCCceEEeeCCeEEEEEEeCCeEEEEEecCCCCc
Q 032448            3 ILFSLVARG--SVVLAECSATA---TN----ASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGR   73 (140)
Q Consensus         3 I~Ya~Var~--~~iL~e~~~~~---~~----~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~citd~~~~~   73 (140)
                      |+|+||||+  ++|||++++.+   |+    |..+++.++++++++.++|.+++.|+|.|||++++|++|+||||++||+
T Consensus         3 i~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp~   82 (196)
T 2nut_C            3 VLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPK   82 (196)
T ss_dssp             CCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSCH
T ss_pred             eEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcch
Confidence            899999999  89999998743   44    8999999999999767999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhhccccccc-cCCCccchhhHHHHHHHHHHhcCCchhhHHHHHHhhhhhhcc
Q 032448           74 RIPFAFLEDIHQRFVKTYGRAVLS-AQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVEM  139 (140)
Q Consensus        74 ~~af~fL~~i~~~F~~~~~~~~~~-~~~~~~~~~F~~~l~~~~~~yn~~~~~dkl~~l~~~l~evk~  139 (140)
                      ++||.||++|+++|...|+..|.+ +.||++. +|++.|+++|++|+||++.|+|.+++.+|+||+.
T Consensus        83 r~af~fL~~i~~~F~~~~~~~~~~~~~~~~~~-~f~~~l~~~~~~y~~~~~~d~l~~~~~~l~ev~~  148 (196)
T 2nut_C           83 KLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFI-EFDTFIQKTKKLYIDSRARRNLGSINTELQDVQR  148 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTTTCCSTTTTG-GGHHHHHHHHTTTSCCC-----------------
T ss_pred             HHHHHHHHHHHHHHHHhccchhccccCCCchH-HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHH
Confidence            999999999999999999977755 6899996 9999999999999999999999999999999985

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A

Probab=100.00  E-value=8.8e-38  Score=217.06  Aligned_cols=121  Identities=40%  Similarity=0.689  Sum_probs=109.6

Q ss_pred             CceEEEEEEeCCeeEeeecCCCCCHHHHHHHHhccCCCCCCCceEEeeCCeEEEEEEeCCeEEEEEecCCCCcccHHHHH
Q 032448            1 MAILFSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFL   80 (140)
Q Consensus         1 M~I~Ya~Var~~~iL~e~~~~~~~~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~citd~~~~~~~af~fL   80 (140)
                      |+|+|+||+||++|||||++.++||..+++.+|+++++ .++|.+++.|+|+|||+++||++|+||||++||+++||.||
T Consensus        44 M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~~-~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fL  122 (169)
T 2vx8_A           44 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPS-ENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL  122 (169)
T ss_dssp             SCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSCS-SCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred             CceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCCC-CCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHH
Confidence            99999999999999999999899999999999999997 68899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccccCCCccchhhHHHHHHHHHHhcCCc
Q 032448           81 EDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDP  122 (140)
Q Consensus        81 ~~i~~~F~~~~~~~~~~~~~~~~~~~F~~~l~~~~~~yn~~~  122 (140)
                      ++|+++|..+|+..|.++.+|+++++|++.|++.|++|+++.
T Consensus       123 edI~~eF~~~y~~~~~~a~pysf~~eF~~~Lk~~~~~~~~~~  164 (169)
T 2vx8_A          123 NEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENH  164 (169)
T ss_dssp             HHHHHHHHHHHTTGGGTCCTTTTHHHHHHHHSCC--------
T ss_pred             HHHHHHHHHHhhhhhhccCCcchhHHHHHHHHHHHHHhcCcc
Confidence            999999999999888888899998899999999999998753

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A

Probab=99.98  E-value=6.7e-32  Score=183.47  Aligned_cols=122  Identities=19%  Similarity=0.288  Sum_probs=102.6

Q ss_pred             CceEEEEEEeC----CeeEeeecCCC----------CCH-HHHHHHHhccCCCCCCCceEEeeCCeEEEEE-EeCCeEEE
Q 032448            1 MAILFSLVARG----SVVLAECSATA----------TNA-SAIARQILDKIPGNNDSHVSYSQDRYIFHVK-RTDGLTVL   64 (140)
Q Consensus         1 M~I~Ya~Var~----~~iL~e~~~~~----------~~~-~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l-~~~~~~~~   64 (140)
                      |.|+|++|+|+    .++|+++++.+          ++| ..+++++++|+++  ++|++++.|+|+|||+ +++|++||
T Consensus         5 Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~--~~R~sv~~~~y~fH~~~~~~gl~~l   82 (144)
T 3bw6_A            5 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA--GQRQSIEEGNYIGHVYARSEGICGV   82 (144)
T ss_dssp             CCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCT--TEEEEEEETTEEEEEEECTTSEEEE
T ss_pred             EEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCC--CceEEEEeCCEEEEEEEecCCEEEE
Confidence            78999999999    68999999876          555 7899999999997  7999999999999999 88999999


Q ss_pred             EEecCCCCcccHHHHHHHHHHHHHhhcccc-ccc-cCCCccchhhHHHHHHHHHHhcCCchhhH
Q 032448           65 CMADDTAGRRIPFAFLEDIHQRFVKTYGRA-VLS-AQAYGMNDEFSRVLSQQMEYYSDDPNADR  126 (140)
Q Consensus        65 citd~~~~~~~af~fL~~i~~~F~~~~~~~-~~~-~~~~~~~~~F~~~l~~~~~~yn~~~~~dk  126 (140)
                      ||||++||+|+||.||++|+++|.++|+.. |.+ ..+++ .-.| +.|++.|++|+||+++|+
T Consensus        83 ~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~-~~~f-~~l~~~i~kYqdp~~aD~  144 (144)
T 3bw6_A           83 LITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETND-ALKM-KQLDTYISKYQDPSQADA  144 (144)
T ss_dssp             EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCG-GGCC-THHHHHHHHTSCC-----
T ss_pred             EEECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccC-Ccch-HHHHHHHHHhCchhhcCC
Confidence            999999999999999999999999999966 776 44221 2244 789999999999988885

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=99.96  E-value=4.7e-29  Score=177.35  Aligned_cols=132  Identities=20%  Similarity=0.342  Sum_probs=111.8

Q ss_pred             CceEEEEEEeCC----eeEeeecCCC----------CCHH-HHHHHHhccCCCCCCCceEEeeCCeEEE-EEEeCCeEEE
Q 032448            1 MAILFSLVARGS----VVLAECSATA----------TNAS-AIARQILDKIPGNNDSHVSYSQDRYIFH-VKRTDGLTVL   64 (140)
Q Consensus         1 M~I~Ya~Var~~----~iL~e~~~~~----------~~~~-~~~~~vl~~i~~~~~~k~~~~~~~~~~h-~l~~~~~~~~   64 (140)
                      |.|++.+|.+.+    ++|+...+.+          ++|. .+++.+++++++  ++|.+++.|+|.|| |+.++|++|+
T Consensus         2 mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~--~~r~s~~~~~y~fH~y~~~~gl~yl   79 (199)
T 3kyq_A            2 MKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK--GSRASVKEQEYLCHVYVRSDSLAGV   79 (199)
T ss_dssp             CCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT--TEEEEEECSSEEEEEEECTTSEEEE
T ss_pred             ceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC--CCeEEEEeCCEEEEEEEecCCEEEE
Confidence            789999999853    6777665543          2444 566799999987  88999999999999 9999999999


Q ss_pred             EEecCCCCcccHHHHHHHHHHHHHhhccc-cccc--cCCCccchhhHHHHHHHHHHhcCCchhhHHHHHHhhhhhhcc
Q 032448           65 CMADDTAGRRIPFAFLEDIHQRFVKTYGR-AVLS--AQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVEM  139 (140)
Q Consensus        65 citd~~~~~~~af~fL~~i~~~F~~~~~~-~~~~--~~~~~~~~~F~~~l~~~~~~yn~~~~~dkl~~l~~~l~evk~  139 (140)
                      ||||++||+++||.||++|+++|...|+. .|.+  ..+++    | +.|+++|++|+||+++|+|.+++.+|+||+.
T Consensus        80 ~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~~----f-~~l~~~m~~Y~dp~~~d~l~~~q~el~evk~  152 (199)
T 3kyq_A           80 VIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIH----Y-TALDGHLSRYQNPREADPMSKVQAELDETKI  152 (199)
T ss_dssp             EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTCC----C-CTHHHHHHHTTSGGGCCCCHHHHHHHHTCCC
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHhccchhhhcccccccc----c-HHHHHHHHHhCCchhhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999984 5543  34443    4 6788999999998889999999999999985

>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1

Probab=98.10  E-value=1.8e-05  Score=55.07  Aligned_cols=110  Identities=16%  Similarity=0.305  Sum_probs=74.7

Q ss_pred             eEEEEEEeCCeeEeeecCCCC----CHHHHHHHHhccCCCCCCCceEEeeCCeEEEEEEeC--CeEEEEEecCCCCcccH
Q 032448            3 ILFSLVARGSVVLAECSATAT----NASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTD--GLTVLCMADDTAGRRIP   76 (140)
Q Consensus         3 I~Ya~Var~~~iL~e~~~~~~----~~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~--~~~~~citd~~~~~~~a   76 (140)
                      =+.+.+.+|++||+.|+....    ....+++.+|-.=.   .+..+++.++|...|..+|  |++|++|=.+-.+-.-.
T Consensus        12 D~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER---~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~Yi   88 (185)
T 2fh5_A           12 DFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQER---GGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYV   88 (185)
T ss_dssp             SEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC----------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHH
T ss_pred             eEEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhccc---cCCCceeEcCeEEEEEEeccCCEEEEEEEcccccchHH
Confidence            367899999999999954322    35788888874422   2234688999999988775  89999997666555556


Q ss_pred             HHHHHHHHHHHHhhcccccc--c-c----CCCccchhhHHHHHHHH
Q 032448           77 FAFLEDIHQRFVKTYGRAVL--S-A----QAYGMNDEFSRVLSQQM  115 (140)
Q Consensus        77 f~fL~~i~~~F~~~~~~~~~--~-~----~~~~~~~~F~~~l~~~~  115 (140)
                      =.||++|+..|...|+....  . .    ....++..|...+++.-
T Consensus        89 D~LL~~v~~~Fv~~Y~~~L~~~~~~~~~~~~~~Fd~~F~~~l~~~e  134 (185)
T 2fh5_A           89 DKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAE  134 (185)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccccccccccCchhHHHHHHHHHHH
Confidence            68999999999999964421  1 1    22356667777666653

>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}

Probab=94.68  E-value=0.31  Score=31.84  Aligned_cols=60  Identities=13%  Similarity=0.208  Sum_probs=48.9

Q ss_pred             HHHHHHHhccCCCCCCCceEEe----eCCeEEEEEE---eCCeEEEEEecCCCCcccHHHHHHHHHH
Q 032448           26 SAIARQILDKIPGNNDSHVSYS----QDRYIFHVKR---TDGLTVLCMADDTAGRRIPFAFLEDIHQ   85 (140)
Q Consensus        26 ~~~~~~vl~~i~~~~~~k~~~~----~~~~~~h~l~---~~~~~~~citd~~~~~~~af~fL~~i~~   85 (140)
                      +.+..-||+++-|-.++|.+=.    .+||-++|..   +.|.+++|.|..+.|+-.+-..|.+++.
T Consensus        48 ~Li~dmViPkVV~v~GNKVTKmS~~LIDGyDCYYtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~  114 (149)
T 2fz0_A           48 NLIMDMVLPKVVPIKGNKVTKMSMNLIDGFDCFYSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE  114 (149)
T ss_dssp             HHHHHTTGGGCCCCSSCSSEECCSCCSSSEEEEECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred             HHHHheecceEEecCCCeEEEEeeeccccceeeeeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence            4556677888887666666542    4899988887   3678999999999999999999999976

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A

Probab=94.45  E-value=0.55  Score=31.31  Aligned_cols=80  Identities=11%  Similarity=0.142  Sum_probs=56.7

Q ss_pred             eCCeeEeeecCCC-CCH---HHHHHHHhccCCCCCCCceEEeeCCeEEEEEEeCCeEEEEEecCCCCcccHHHHHHHHHH
Q 032448           10 RGSVVLAECSATA-TNA---SAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQ   85 (140)
Q Consensus        10 r~~~iL~e~~~~~-~~~---~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~citd~~~~~~~af~fL~~i~~   85 (140)
                      +|.++|+-|-... .+.   ..+.+.+.+++.. .+ .-.+..+++.+.|..-.++.|+++++.+...-..+.||..+-+
T Consensus        22 ~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r-~~-~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~ile~L~~~ve   99 (153)
T 3tjz_C           22 DGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHR-TD-SEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFD   99 (153)
T ss_dssp             TSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSS-CC-CCEEEETTEEEEEEECSSCEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CC-CCEEEECCEEEEEEEECCEEEEEEEcCCCChHHHHHHHHHHHH
Confidence            4457777664321 222   2233344444432 22 2456789999999999999999999999999999999999888


Q ss_pred             HHHhhc
Q 032448           86 RFVKTY   91 (140)
Q Consensus        86 ~F~~~~   91 (140)
                      -+..-+
T Consensus       100 ~l~~yf  105 (153)
T 3tjz_C          100 SLSQML  105 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            887777

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=93.88  E-value=0.61  Score=30.46  Aligned_cols=49  Identities=8%  Similarity=0.043  Sum_probs=42.6

Q ss_pred             eEEeeCCeEEEEEEeCCeEEEEEecCCCCcccHHHHHHHHHHHHHhhcc
Q 032448           44 VSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG   92 (140)
Q Consensus        44 ~~~~~~~~~~h~l~~~~~~~~citd~~~~~~~af~fL~~i~~~F~~~~~   92 (140)
                      -.+..+++.|-|..-+++.|+|+++.+...-..+.||..+.+-+..-++
T Consensus        48 ~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~   96 (142)
T 2vgl_S           48 NFVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFH   96 (142)
T ss_dssp             SEEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             CEEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            3457789999898889999999999999999999999998888776665

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=93.49  E-value=1.1  Score=29.92  Aligned_cols=49  Identities=14%  Similarity=0.177  Sum_probs=41.8

Q ss_pred             eEEeeCCeEEEEEEeCCeEEEEEecCCCCcccHHHHHHHHHHHHHhhcc
Q 032448           44 VSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG   92 (140)
Q Consensus        44 ~~~~~~~~~~h~l~~~~~~~~citd~~~~~~~af~fL~~i~~~F~~~~~   92 (140)
                      -.+..+++.|-|..-+++.|+|+++.+...-..+.||..+.+-+..-++
T Consensus        48 ~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~   96 (158)
T 1w63_Q           48 SFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFG   96 (158)
T ss_dssp             SEEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHS
T ss_pred             CeEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            3457789999999999999999999999999999999988877766555

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A

Probab=93.48  E-value=1  Score=29.55  Aligned_cols=117  Identities=9%  Similarity=0.083  Sum_probs=67.4

Q ss_pred             Cc-eEE-EEEEeCCeeEeeecCCCC-------C----HH---HHHHHHhccCCCCCCC---ceEEeeCCeEEE-EEEeCC
Q 032448            1 MA-ILF-SLVARGSVVLAECSATAT-------N----AS---AIARQILDKIPGNNDS---HVSYSQDRYIFH-VKRTDG   60 (140)
Q Consensus         1 M~-I~Y-a~Var~~~iL~e~~~~~~-------~----~~---~~~~~vl~~i~~~~~~---k~~~~~~~~~~h-~l~~~~   60 (140)
                      |+ |.+ +.|.|.+.+|.+..-...       +    +.   --+..+++++.+..++   +.+...++|..| |....|
T Consensus         3 M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg   82 (142)
T 2j3w_A            3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH   82 (142)
T ss_dssp             CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred             cceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCC
Confidence            66 555 556666788886642211       1    11   1122233333322222   455666788877 666689


Q ss_pred             eEEEEEecCCCCcccHHHHHHHHHHHHHhhccccccc-cCCCccchhhHHHHHHHHHHhc
Q 032448           61 LTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLS-AQAYGMNDEFSRVLSQQMEYYS  119 (140)
Q Consensus        61 ~~~~citd~~~~~~~af~fL~~i~~~F~~~~~~~~~~-~~~~~~~~~F~~~l~~~~~~yn  119 (140)
                      +-|+.++|.. .....-.||.+|..-|....-+-.-. ..|.. ...|+..++++++.|-
T Consensus        83 ~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~NPfy~~~~pI~-s~~Fd~~v~~~~~~~l  140 (142)
T 2j3w_A           83 MRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIR-SSAFDRKVQFLGKKHL  140 (142)
T ss_dssp             CEEEEEESSC-CHHHHHHHHHHHHHHHHHHHHSTTCCTTCCCC-CHHHHHHHHHHHHHHT
T ss_pred             cEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhcCCCCCCCCcee-cHHHHHHHHHHHHHhc
Confidence            9999999873 23346688888887666532221111 11221 3589999999998884

>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=92.72  E-value=0.026  Score=32.31  Aligned_cols=20  Identities=20%  Similarity=0.376  Sum_probs=13.1

Q ss_pred             CCchhhHHHHHHhhhhhhcc
Q 032448          120 DDPNADRINRIKGEMSQVEM  139 (140)
Q Consensus       120 ~~~~~dkl~~l~~~l~evk~  139 (140)
                      +|++.|+|.+|+.+|+||+.
T Consensus         4 ~~~~~d~l~~vq~~l~evk~   23 (65)
T 1gl2_A            4 MSAGNDRVRNLQSEVEGVKN   23 (65)
T ss_dssp             ------CHHHHHHHHHHHHH
T ss_pred             CchhhhHHHHHHHHHHHHHH
Confidence            56789999999999999974

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=91.13  E-value=0.74  Score=35.58  Aligned_cols=91  Identities=14%  Similarity=0.121  Sum_probs=58.6

Q ss_pred             CceEEEEEEeC-CeeEeeec-C--CCCC-HHHHHHHHhccCCCCCCCceEEeeCCeEEEEEEeCCeEEEEEecCCCCccc
Q 032448            1 MAILFSLVARG-SVVLAECS-A--TATN-ASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAGRRI   75 (140)
Q Consensus         1 M~I~Ya~Var~-~~iL~e~~-~--~~~~-~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~citd~~~~~~~   75 (140)
                      |.|...+|.-. +.+|.+.. .  .... .+..-+.++.+... ...--.+..+++.|.|..-+++.|+|+++.+...-.
T Consensus         1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~-~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~   79 (423)
T 1w63_M            1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEE-GMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSL   79 (423)
T ss_dssp             -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHT-SCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHH
T ss_pred             CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhcccc-CCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence            55666666533 44444332 1  1112 33444455543220 122235578899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcc
Q 032448           76 PFAFLEDIHQRFVKTYG   92 (140)
Q Consensus        76 af~fL~~i~~~F~~~~~   92 (140)
                      .+.||..+.+-+..-++
T Consensus        80 ~le~L~~~v~~l~~yf~   96 (423)
T 1w63_M           80 VFSFLYKVVQVFSEYFK   96 (423)
T ss_dssp             HHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999998888776665

>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=89.83  E-value=0.11  Score=30.87  Aligned_cols=20  Identities=10%  Similarity=0.224  Sum_probs=17.7

Q ss_pred             CCchhhHHHHHHhhhhhhcc
Q 032448          120 DDPNADRINRIKGEMSQVEM  139 (140)
Q Consensus       120 ~~~~~dkl~~l~~~l~evk~  139 (140)
                      ++++.|+|.+|+.+|+||+.
T Consensus        10 ~~~~~d~l~~vq~el~ev~~   29 (80)
T 1l4a_A           10 PVQQSKRLQQTQAQVEEVVD   29 (80)
T ss_dssp             CCCCSCHHHHHHHHHHHHHH
T ss_pred             CcccccHHHHHHHHHHHHHH
Confidence            56789999999999999974

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M

Probab=89.46  E-value=6.1  Score=30.53  Aligned_cols=49  Identities=12%  Similarity=0.227  Sum_probs=42.4

Q ss_pred             eEEeeCCeEEEEEEeCCeEEEEEecCCCCcccHHHHHHHHHHHHHhhcc
Q 032448           44 VSYSQDRYIFHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYG   92 (140)
Q Consensus        44 ~~~~~~~~~~h~l~~~~~~~~citd~~~~~~~af~fL~~i~~~F~~~~~   92 (140)
                      -.+..+++.|.|..-+++.|+|+++.+...-..+.||..+.+-+..-++
T Consensus        46 ~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~   94 (435)
T 2vgl_M           46 PVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG   94 (435)
T ss_dssp             SEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred             CEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            4567889999999999999999999999999999999998887776665

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=88.71  E-value=3.6  Score=26.96  Aligned_cols=115  Identities=18%  Similarity=0.230  Sum_probs=67.3

Q ss_pred             CceEEEEE-EeCCeeEeeec--CCC--C----C-HH------HHHHHHhccCCCC--CCCceEEeeCCeEEE-EEEeCCe
Q 032448            1 MAILFSLV-ARGSVVLAECS--ATA--T----N-AS------AIARQILDKIPGN--NDSHVSYSQDRYIFH-VKRTDGL   61 (140)
Q Consensus         1 M~I~Ya~V-ar~~~iL~e~~--~~~--~----~-~~------~~~~~vl~~i~~~--~~~k~~~~~~~~~~h-~l~~~~~   61 (140)
                      |.|++..| .|.+.+|.+..  ...  +    + ..      --++.+.+++.|.  .....+++.++|..| |..-.|+
T Consensus         1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tgi   80 (145)
T 2j3t_C            1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGI   80 (145)
T ss_dssp             -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred             CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence            66666554 45567777553  211  1    1 10      1123444555542  245677888999888 5556899


Q ss_pred             EEEEEecCCCCcccHHHHHHHHH-HHHHhhc-cccccc-cCCCccchhhHHHHHHHHHHh
Q 032448           62 TVLCMADDTAGRRIPFAFLEDIH-QRFVKTY-GRAVLS-AQAYGMNDEFSRVLSQQMEYY  118 (140)
Q Consensus        62 ~~~citd~~~~~~~af~fL~~i~-~~F~~~~-~~~~~~-~~~~~~~~~F~~~l~~~~~~y  118 (140)
                      -|+.+||...+  -.-.||.+|. .-|...- .+-.-. ..|.. ...|+..++++++.+
T Consensus        81 KFvl~td~~~~--~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~-s~~Fd~~v~~~~~~~  137 (145)
T 2j3t_C           81 KVVMNTDLGVG--PIRDVLHHIYSALYVEFVVKNPLCPLGQTVQ-SELFRSRLDSYVRSL  137 (145)
T ss_dssp             EEEEEECTTCC--CCHHHHHHHHHTTHHHHTTTCTTSCTTSCCC-CHHHHHHHHHHHTTS
T ss_pred             EEEEEecCCcc--hHHHHHHHHHHHHHHHHHhcCCCCCCCCcee-cHHHHHHHHHHHHhC
Confidence            99999998744  4668888888 5665421 121111 12222 357999999988765

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A

Probab=87.34  E-value=6  Score=27.93  Aligned_cols=89  Identities=13%  Similarity=0.154  Sum_probs=59.7

Q ss_pred             HHHhccCCCC--CCCceEEeeCCeEEE-EEEeCCeEEEEEecCCCCcccHHHHHHHHHHHHHhhc-cccccc-cCCCccc
Q 032448           30 RQILDKIPGN--NDSHVSYSQDRYIFH-VKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTY-GRAVLS-AQAYGMN  104 (140)
Q Consensus        30 ~~vl~~i~~~--~~~k~~~~~~~~~~h-~l~~~~~~~~citd~~~~~~~af~fL~~i~~~F~~~~-~~~~~~-~~~~~~~  104 (140)
                      ..+.+++.|.  ...-.+++.+.|..| |....|+-|+.+||..  ....-.||.+|..-|...- .+-... ..+.. .
T Consensus       119 d~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~--~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~-s  195 (219)
T 2j3t_D          119 FAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPR--QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIR-C  195 (219)
T ss_dssp             HHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTT--CCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCC-C
T ss_pred             HHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCC--chHHHHHHHHHHHHHHHHhccCCCCCCCCccc-h
Confidence            4455666652  234567788999988 5556899999999986  4467788889887666531 222111 12222 3


Q ss_pred             hhhHHHHHHHHHHhcCC
Q 032448          105 DEFSRVLSQQMEYYSDD  121 (140)
Q Consensus       105 ~~F~~~l~~~~~~yn~~  121 (140)
                      ..|+..++++++.++..
T Consensus       196 ~~Fd~~v~~l~~~~~~~  212 (219)
T 2j3t_D          196 ELFDQNLKLALEVAEKA  212 (219)
T ss_dssp             HHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHhhcc
Confidence            68999999999998764

>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=84.03  E-value=0.41  Score=29.48  Aligned_cols=19  Identities=11%  Similarity=0.204  Sum_probs=16.7

Q ss_pred             CchhhHHHHHHhhhhhhcc
Q 032448          121 DPNADRINRIKGEMSQVEM  139 (140)
Q Consensus       121 ~~~~dkl~~l~~~l~evk~  139 (140)
                      +++.|+|.+|+.+|+||+.
T Consensus        26 ~~~~d~l~~vq~eldeVk~   44 (96)
T 1sfc_A           26 LTSNRRLQQTQAQVDEVVD   44 (96)
T ss_dssp             CCCSHHHHHHHHHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHH
Confidence            4678999999999999974

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=82.95  E-value=7.7  Score=25.83  Aligned_cols=86  Identities=21%  Similarity=0.221  Sum_probs=53.7

Q ss_pred             HHHhccCCCCC--CCceEEeeCCeEEEEE-EeCCeEEEEEecCCCCcccHHHHHHHHHH-HHHhhc-ccc-----cccc-
Q 032448           30 RQILDKIPGNN--DSHVSYSQDRYIFHVK-RTDGLTVLCMADDTAGRRIPFAFLEDIHQ-RFVKTY-GRA-----VLSA-   98 (140)
Q Consensus        30 ~~vl~~i~~~~--~~k~~~~~~~~~~h~l-~~~~~~~~citd~~~~~~~af~fL~~i~~-~F~~~~-~~~-----~~~~-   98 (140)
                      +.+.+++.|..  +.-..++.+.|..|+. ...|+-|+++||...+  -.-.+|.+|.. -|..-. .+-     .... 
T Consensus        52 ~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~  129 (159)
T 3cue_C           52 RSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQ--SYTQVLQYIYSHIYVKYVSNNLLSPYDFAENE  129 (159)
T ss_dssp             HHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSS--CTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSC
T ss_pred             HHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcc--hHHHHHHHHHHHHHHHHHHhCCCccccccccc
Confidence            55566666532  4556677789988844 5579999999997643  45577888886 555411 111     1000 


Q ss_pred             --------CCCccchhhHHHHHHHHHHh
Q 032448           99 --------QAYGMNDEFSRVLSQQMEYY  118 (140)
Q Consensus        99 --------~~~~~~~~F~~~l~~~~~~y  118 (140)
                              .+-. ...|+..|+++++.+
T Consensus       130 ~~~~~~~~~pI~-s~~Fd~~l~~~~~~~  156 (159)
T 3cue_C          130 NEMRGQGTRKIT-NRNFISVLESFLAPM  156 (159)
T ss_dssp             TTTTTSCCCCCC-CHHHHHHHHHHTSCC
T ss_pred             cccccccCcCcc-cHHHHHHHHHHHHhc
Confidence                    1221 357888888887765

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=82.42  E-value=11  Score=26.64  Aligned_cols=77  Identities=10%  Similarity=0.179  Sum_probs=50.1

Q ss_pred             CCceEEeeCCeEEE-EEEeCCeEEEEEecCCCCc----------------------ccHHHHHHHHHHHHHhhc-cccc-
Q 032448           41 DSHVSYSQDRYIFH-VKRTDGLTVLCMADDTAGR----------------------RIPFAFLEDIHQRFVKTY-GRAV-   95 (140)
Q Consensus        41 ~~k~~~~~~~~~~h-~l~~~~~~~~citd~~~~~----------------------~~af~fL~~i~~~F~~~~-~~~~-   95 (140)
                      .+-..+..+.|..| |....|+-|++++|...+.                      ...-.||.+|...|.... .+-. 
T Consensus       117 ~g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY  196 (219)
T 3cue_A          117 SGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSY  196 (219)
T ss_dssp             SSCCEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             CceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            45677788888887 5556899999999987633                      345688888887776522 1111 


Q ss_pred             cccCCCccchhhHHHHHHHHHHh
Q 032448           96 LSAQAYGMNDEFSRVLSQQMEYY  118 (140)
Q Consensus        96 ~~~~~~~~~~~F~~~l~~~~~~y  118 (140)
                      .-..+.. ...|+..++.+++.+
T Consensus       197 ~~~~pI~-S~~Fd~~V~~~~~~~  218 (219)
T 3cue_A          197 SMEMPIR-SNLFDEKVKKMVENL  218 (219)
T ss_dssp             CTTSCCC-CHHHHHHHHHHHHHH
T ss_pred             CCCCccc-cHHHHHHHHHHHHhc
Confidence            1111221 257888888888766

>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}

Probab=80.42  E-value=0.043  Score=28.02  Aligned_cols=18  Identities=11%  Similarity=0.289  Sum_probs=15.7

Q ss_pred             chhhHHHHHHhhhhhhcc
Q 032448          122 PNADRINRIKGEMSQVEM  139 (140)
Q Consensus       122 ~~~dkl~~l~~~l~evk~  139 (140)
                      +..|++.+++.+|+||+.
T Consensus         6 ~~~d~l~~vq~qvdeVk~   23 (38)
T 3fie_C            6 TSNRRLQQTQAQVDEVVD   23 (38)
T ss_dssp             CCCCSSCEESCCCCCSCC
T ss_pred             cchhHHHHHHHHHHHHHH
Confidence            457999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	140
d1ifqa_	127	d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId	5e-29
d1ioua_	140	d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker	2e-21
d2fh5a1	129	d.110.4.4 (A:1-129) Signal recognition particle re	0.003

>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Sec22b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (251), Expect = 5e-29
 Identities = 24/127 (18%), Positives = 56/127 (44%), Gaps = 11/127 (8%)

Query: 2   AILFSLVARGSVVLAECSATATNASA---------IARQILDKIPGNNDSHVSYSQDRYI 52
           ++L +++AR +  L   ++   +  +          A+Q+  K+   + +  +       
Sbjct: 1   SVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 60

Query: 53  FHVKRTDGLTVLCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSA-QAYGMNDEFSRVL 111
           FH     G+  L + +    +++ FA+LED+H  F + +G+ V +  + Y    EF   +
Sbjct: 61  FHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFI-EFDTFI 119

Query: 112 SQQMEYY 118
            +  + Y
Sbjct: 120 QKTKKLY 126

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.4 bits (201), Expect = 2e-21
 Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 11/122 (9%)

Query: 5   FSLVARGSVVLAECSATATNASAIARQILDKIPGNNDSHVSYSQDRYIFHV-KRTDGLTV 63
           F    R SV   +        +  A  +  +         S  +  YI HV  R++G+  
Sbjct: 28  FGFFERSSV--GQFM------TFFAETVASRTGAG--ERQSIEEGNYIGHVYARSEGICG 77

Query: 64  LCMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLSAQAYGMNDEFSRVLSQQMEYYSDDPN 123
           + + D     R  +  L  I   ++  + +   +      +    + L   +  Y D   
Sbjct: 78  VLITDKQYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKMKQLDTYISKYQDPSQ 137

Query: 124 AD 125
           AD
Sbjct: 138 AD 139

>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: SRP alpha N-terminal domain-like
domain: Signal recognition particle receptor alpha subunit, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 0.003
 Identities = 16/123 (13%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 1   MAILFSLVARGSVVLAECSATATN-ASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTD 59
           M   F++ ++G +VL      + +    +   I   +      + S++ +      K  +
Sbjct: 1   MVDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDN 60

Query: 60  GLTVLCMADDTAGRRIPFA--FLEDIHQRFVKTYGRAVLSAQA-------YGMNDEFSRV 110
              ++ +        + +    ++D+H+ F   Y   +    A       +   ++F R+
Sbjct: 61  QFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL 120

Query: 111 LSQ 113
           L +
Sbjct: 121 LRE 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	140
d1ifqa_	127	Sec22b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ioua_	140	Synaptobrevin homolog 1 ykt6 {Baker's yeast (Sacch	99.93
d2fh5a1	129	Signal recognition particle receptor alpha subunit	98.46
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	95.66
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	95.04
d2j3wa1	140	Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]	93.0

>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Sec22b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.2e-34  Score=188.06  Aligned_cols=116  Identities=22%  Similarity=0.454  Sum_probs=106.0

Q ss_pred             ceEEEEEEeC--CeeEeeecCCCCC-------HHHHHHHHhccCCCCCCCceEEeeCCeEEEEEEeCCeEEEEEecCCCC
Q 032448            2 AILFSLVARG--SVVLAECSATATN-------ASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTDGLTVLCMADDTAG   72 (140)
Q Consensus         2 ~I~Ya~Var~--~~iL~e~~~~~~~-------~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~~~~~~citd~~~~   72 (140)
                      ||+|++|||+  ++||||+++.+++       ++.+++.+|++++|++++|++++.|+|.|||++++|++||||||++||
T Consensus         1 sil~t~IaR~~DgL~L~~s~~~~~~~~~~~~~~k~qak~ll~kl~~~~~~r~s~~~~~y~fHy~~~~gi~yl~i~d~~~~   80 (127)
T d1ifqa_           1 SVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP   80 (127)
T ss_dssp             CCCEEEEEETTTCCEEEEECCCTTCCHHHHHHHHHHHHHHHTTCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred             CeEEEEEEEecCCcEEEEEeccccccchhHHHHHHHHHHHHHhCCCCCCCcEEEEECCEEEEEEecCCeEEEEEEccccC
Confidence            6999999997  4899999966553       357899999999987789999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhhccccccc-cCCCccchhhHHHHHHHHHHh
Q 032448           73 RRIPFAFLEDIHQRFVKTYGRAVLS-AQAYGMNDEFSRVLSQQMEYY  118 (140)
Q Consensus        73 ~~~af~fL~~i~~~F~~~~~~~~~~-~~~~~~~~~F~~~l~~~~~~y  118 (140)
                      +++||.||++|+++|..+|++++.+ .+||+|. +|+..|+++++.|
T Consensus        81 ~~laF~fLeei~~eF~~~y~~~i~~~~rpy~Fi-~Fd~~iqk~k~~y  126 (127)
T d1ifqa_          81 KKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFI-EFDTFIQKTKKLY  126 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTTTTCCSTTTTG-GGHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhhhhhhhcccCCcchH-HHHHHHHHHHHhc
Confidence            9999999999999999999987665 5799997 8999999999988

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3.6e-26  Score=152.82  Aligned_cols=123  Identities=18%  Similarity=0.253  Sum_probs=101.8

Q ss_pred             CceEEEEEEeC--C--eeEeeecCCCC----------C-HHHHHHHHhccCCCCCCCceEEeeCCeEEE-EEEeCCeEEE
Q 032448            1 MAILFSLVARG--S--VVLAECSATAT----------N-ASAIARQILDKIPGNNDSHVSYSQDRYIFH-VKRTDGLTVL   64 (140)
Q Consensus         1 M~I~Ya~Var~--~--~iL~e~~~~~~----------~-~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h-~l~~~~~~~~   64 (140)
                      |.|++..|.|.  +  ++|+...+.+.          + +..++|.+++|+++  +.|++++.++|.|| |+.++|++|+
T Consensus         1 Mkl~~~~v~~~~~~~~~~L~~a~Dlssf~ffqR~svkE~~~f~sr~i~~Rt~~--g~r~sv~~~~y~~h~yv~~~gl~~l   78 (140)
T d1ioua_           1 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA--GERQSIEEGNYIGHVYARSEGICGV   78 (140)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEECCSSCCTTHHHHHHHHHHHHHHHHHHHCCS--SSEEEEEETTEEEEEECCSSSCEEE
T ss_pred             CeEEEEEEEEcCCCCcEEEeeeccccccceeehHhHHHHHHHHHHHHhhcCCC--CceEEEEcCCeEEEEEEeeCCEEEE
Confidence            88999999995  2  67777766431          1 35789999999997  88999999999999 7888999999


Q ss_pred             EEecCCCCcccHHHHHHHHHHHHHhhcccc-ccccCCCccchhhHHHHHHHHHHhcCCchhhH
Q 032448           65 CMADDTAGRRIPFAFLEDIHQRFVKTYGRA-VLSAQAYGMNDEFSRVLSQQMEYYSDDPNADR  126 (140)
Q Consensus        65 citd~~~~~~~af~fL~~i~~~F~~~~~~~-~~~~~~~~~~~~F~~~l~~~~~~yn~~~~~dk  126 (140)
                      ||||.+||+|+||.||++|.++|.++|+.. |.+. ..+.+..+.+.|.++|++|+||+++|.
T Consensus        79 ~i~d~~Yp~r~AF~~L~~i~~eF~~~~~~~~~~~i-~~~~~~~~~~~l~~~l~kYQdP~~aDa  140 (140)
T d1ioua_          79 LITDKQYPVRPAYTLLNKILDEYLVAHPKEEWADV-TETNDALKMKQLDTYISKYQDPSQADA  140 (140)
T ss_dssp             EEBCTTSCHHHHHHHHHHHHHHHHHSSCHHHHTTC-SCCCTTTSCHHHHHHHHHTTSSCGGGC
T ss_pred             EEECCCcchHHHHHHHHHHHHHHHHHcChHhhhhh-hccccccchHHHHHHHHHhCchhhccC
Confidence            999999999999999999999999999854 4432 222233456889999999999988873

>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: SRP alpha N-terminal domain-like
domain: Signal recognition particle receptor alpha subunit, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=6.3e-07  Score=57.48  Aligned_cols=109  Identities=16%  Similarity=0.316  Sum_probs=75.0

Q ss_pred             eEEEEEEeCCeeEeeecCCCCC----HHHHHHHHhccCCCCCCCceEEeeCCeEEEEEEeC--CeEEEEEecCCCCcccH
Q 032448            3 ILFSLVARGSVVLAECSATATN----ASAIARQILDKIPGNNDSHVSYSQDRYIFHVKRTD--GLTVLCMADDTAGRRIP   76 (140)
Q Consensus         3 I~Ya~Var~~~iL~e~~~~~~~----~~~~~~~vl~~i~~~~~~k~~~~~~~~~~h~l~~~--~~~~~citd~~~~~~~a   76 (140)
                      =.++.+.+|+.||..|+....+    ...+++.++-.=.   .+..+++.++|...+..++  +++|++|=.+-.+-.-.
T Consensus         3 D~f~IftkGGiVLW~~~~~~~~~~~~IN~LI~~vlLEER---~~~~~~~~d~y~lkw~~~Ne~~lvfV~vYQ~il~l~yv   79 (129)
T d2fh5a1           3 DFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQER---GGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYV   79 (129)
T ss_dssp             SEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC----------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHH
T ss_pred             cEEEEEeCCeEEEEeecCCCcccchhHHHHHHHhheecc---cCCCceeECCEEEEEEEeccCCEEEEEEEhhhhchHHH
Confidence            3578999999999998644332    5677777774422   3345688899999988875  89999997666666666


Q ss_pred             HHHHHHHHHHHHhhccccccc-------cCCCccchhhHHHHHHH
Q 032448           77 FAFLEDIHQRFVKTYGRAVLS-------AQAYGMNDEFSRVLSQQ  114 (140)
Q Consensus        77 f~fL~~i~~~F~~~~~~~~~~-------~~~~~~~~~F~~~l~~~  114 (140)
                      =.||++++..|...|+++...       ..++.++..|...|++.
T Consensus        80 d~lL~~i~~~F~~~y~~~l~~~~~~~~~~~~~~Fd~~F~~~l~~~  124 (129)
T d2fh5a1          80 DKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREA  124 (129)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccccccccchHHHHHHHHHHH
Confidence            689999999999999754211       13456666776666654

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.00  E-value=0.57  Score=29.17  Aligned_cols=114  Identities=10%  Similarity=0.060  Sum_probs=65.6

Q ss_pred             eEEEEEEeCCeeEeeec--CCC-C----C------H-HHHHHHHhccCCCC---CCCceEEeeCCeEEE-EEEeCCeEEE
Q 032448            3 ILFSLVARGSVVLAECS--ATA-T----N------A-SAIARQILDKIPGN---NDSHVSYSQDRYIFH-VKRTDGLTVL   64 (140)
Q Consensus         3 I~Ya~Var~~~iL~e~~--~~~-~----~------~-~~~~~~vl~~i~~~---~~~k~~~~~~~~~~h-~l~~~~~~~~   64 (140)
                      ..++.|.|.+.+|.+..  ..+ .    +      | ---+..++++..|.   ..-+...+.++|..| |....|+-|+
T Consensus         5 y~f~IIg~~~~pLY~~ef~~~~~~~~~~~~~~~~~fi~hssLDive~~~~~~~~~~l~~l~~~~~~~v~~y~T~tg~Kfv   84 (140)
T d2j3wa1           5 FYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFI   84 (140)
T ss_dssp             EEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTCCEEE
T ss_pred             EEEEEEcCCCCeeEEEecCCcccccccchHHHHHHHHHHHHHHHHHHhcccCCCccceeEEecCCEEEEEEEcCCCcEEE
Confidence            45668888888877643  211 1    1      1 12223333333322   223344567888888 6667899999


Q ss_pred             EEecCCCCcccHHHHHHHHHHHHHhhccccccc-cCCCccchhhHHHHHHHHHHh
Q 032448           65 CMADDTAGRRIPFAFLEDIHQRFVKTYGRAVLS-AQAYGMNDEFSRVLSQQMEYY  118 (140)
Q Consensus        65 citd~~~~~~~af~fL~~i~~~F~~~~~~~~~~-~~~~~~~~~F~~~l~~~~~~y  118 (140)
                      .++|..-+. ..-.|+.++..-|....-+-... ..|-. ...|+..++++.++|
T Consensus        85 l~td~~~~~-~i~~~~~~v~~lYv~~v~NPfy~~~~pI~-s~~Fd~~v~~~~~~~  137 (140)
T d2j3wa1          85 MLHDVRQED-GIKNFFTDVYDLYIKFAMNPFYEPNSPIR-SSAFDRKVQFLGKKH  137 (140)
T ss_dssp             EEESSCCHH-HHHHHHHHHHHHHHHHHHSTTCCTTCCCC-CHHHHHHHHHHHHHH
T ss_pred             EEeCCCcch-HHHHHHHHHHHHHHHHhhCccCCCCCccc-CHHHHHHHHHHHHHH
Confidence            999865442 23467777777666422221111 12222 368999999999887