Citrus Sinensis ID: 032449

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MSSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMRGLSSVEGQLNLLLQGNS
Secondary Structure (PSIPRED)
ccccccEEEEccccccccccccccccEEEccccccccccEEEEcccccccHHHHHHccccEEEEEEEccccccccccccEEcccccccccccccccccccEEEEEEcccEEEEccccccccccccccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEcccccccccccccccccEEEcccccccHHHHHHHHHcccccHHHHHHccccEEEEEEcccccccccccccEEccccccccccHHHHHcccccEEEEccccEEEEccccccccccccccHHHHHHHEEcccc
Coil and Loop (DISEMBL)
MSSSSVILYetrqgksvkppppvtskyivkdtgncspryircslnqipctenllklssmpsALMVQVLalpdpsedpipvvdfgesglvrccccrgyrnpfmefvdngksFVCNFCGVWMLMRGLSSVEGQLNLLLQGNS
Flexible Loop (DISEMBL)
MSSSSVILYetrqgksvkppppvtskyiVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMRGLSSVEGqlnlllqgns
Low Complexity Region (SEG)
MSSSSVILYETRQGKSVKppppVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMRGLSSVEGQLNLLLQGNS
Disordered region (IsUnstruct)
*************************KYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMRGLSSVEGQLNLL*****
Disordered Region (DISOPRED)
****SVI************PP**TSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMRGLSSVEGQLNLLL****
Disordered Region (DISEMBL)
MSSSSVILY***********PPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMRGLSSVEGQLNLLLQGNS
Disordered Region (DISPRO)
****SVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMRGLSSVEGQLNLLLQG**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMRGLSSVEGQLNLLLQGNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	140	2.2.26 [Sep-21-2011]
Q9M081	1080	Protein transport protein	yes	no	0.828	0.107	0.655	2e-41
Q9M291	1096	Protein transport protein	no	no	0.828	0.105	0.629	2e-38
P53992	1094	Protein transport protein	yes	no	0.692	0.088	0.484	6e-21
O94855	1032	Protein transport protein	no	no	0.692	0.093	0.412	3e-18
Q4WLP1	919	Protein transport protein	no	no	0.664	0.101	0.419	7e-17
Q2ULI0	913	Protein transport protein	no	no	0.692	0.106	0.419	9e-17
Q0CSL7	904	Protein transport protein	N/A	no	0.664	0.102	0.419	1e-16
A1DP06	919	Protein transport protein	N/A	no	0.664	0.101	0.419	1e-16
A2QSG6	919	Protein transport protein	no	no	0.664	0.101	0.419	2e-16
Q5B6W0	908	Protein transport protein	no	no	0.692	0.106	0.409	3e-16

>sp|Q9M081|SC24B_ARATH Protein transport protein Sec24-like At4g32640 OS=Arabidopsis thaliana GN=At4g32640 PE=1 SV=3

 Score =  167 bits (423), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 90/116 (77%)

Query: 2   SSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
           SSSS  ++ETRQ     PPPP TS Y+V+DTGNCSPRY+RC++NQIPCT +LL  S M  
Sbjct: 341 SSSSPTVFETRQSNQANPPPPATSDYVVRDTGNCSPRYMRCTINQIPCTVDLLSTSGMQL 400

Query: 62  ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG 117
           ALMVQ LAL  PSE+PI VVDFGE G VRC  C+GY NPFM+F+D G+ F+CNFCG
Sbjct: 401 ALMVQPLALSHPSEEPIQVVDFGEGGPVRCSRCKGYINPFMKFIDQGRKFICNFCG 456

Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF OS=Arabidopsis thaliana GN=CEF PE=1 SV=3

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 73/116 (62%), Positives = 87/116 (75%)

Query: 2   SSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
           SSSS I+YETR      PPPP T  YI +DTGN SPRY+RC++NQIPCT +LL  S M  
Sbjct: 344 SSSSPIVYETRVENKANPPPPTTVDYITRDTGNSSPRYMRCTINQIPCTVDLLSTSGMQL 403

Query: 62  ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG 117
           AL+VQ +AL  PSE+PI VVDFGESG VRC  C+GY NPFM+F+D G+ F+CN CG
Sbjct: 404 ALIVQPMALSHPSEEPIQVVDFGESGPVRCSRCKGYVNPFMKFIDQGRKFICNLCG 459

Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.

Arabidopsis thaliana (taxid: 3702)

>sp|P53992|SC24C_HUMAN Protein transport protein Sec24C OS=Homo sapiens GN=SEC24C PE=1 SV=3

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 64/97 (65%)

Query: 20  PPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIP 79
           PP VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    
Sbjct: 354 PPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPY 413

Query: 80  VVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFC 116
           VVD GESG +RC  C+ Y  PFM+F++ G+ F C FC
Sbjct: 414 VVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFC 450

Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.

Homo sapiens (taxid: 9606)

>sp|O94855|SC24D_HUMAN Protein transport protein Sec24D OS=Homo sapiens GN=SEC24D PE=1 SV=2

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/97 (41%), Positives = 63/97 (64%)

Query: 20  PPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIP 79
           PP VT+  +++D GN SPR+IRC+    PCT ++ K + +P A +++  A    +E P+ 
Sbjct: 292 PPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLY 351

Query: 80  VVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFC 116
           +V+ GESG VRC  C+ Y  PFM+F++ G+ + C FC
Sbjct: 352 LVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFC 388

Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.

Homo sapiens (taxid: 9606)

>sp|Q4WLP1|SEC24_ASPFU Protein transport protein sec24 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=sec24 PE=3 SV=2

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 12/105 (11%)

Query: 14  GKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDP 73
           G SV P P          T NC P+Y+R +LN +P T +LLK S +P AL++Q  A    
Sbjct: 179 GTSVYPSP----------TANCPPKYVRSTLNAVPTTHSLLKKSKLPFALVIQPYASLRD 228

Query: 74  SEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGV 118
           +EDPIPV+   +  + RC  CR Y NPF+ F+D+G  + CN C +
Sbjct: 229 AEDPIPVIP--DQVISRCRRCRSYINPFVTFLDHGHRWRCNMCNL 271

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q2ULI0|SEC24_ASPOR Protein transport protein sec24 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=sec24 PE=3 SV=1

 Score = 85.5 bits (210), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 44/105 (41%), Positives = 62/105 (59%), Gaps = 8/105 (7%)

Query: 19  PPPPV-----TSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDP 73
           PPPP+     TS Y    T NC P+Y+R +LN +P T +LLK S +P AL++Q       
Sbjct: 164 PPPPIVLPQGTSVY-PSPTANCPPKYVRSTLNAVPTTHSLLKKSKLPFALVIQPYGALHD 222

Query: 74  SEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGV 118
           SED +PV+   +  + RC  CR Y NPF+ F+D+G  + CN C +
Sbjct: 223 SEDQVPVIP--DQVISRCRRCRSYINPFVTFLDHGHRWRCNMCNL 265

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

>sp|Q0CSL7|SEC24_ASPTN Protein transport protein sec24 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sec24 PE=3 SV=1

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 12/105 (11%)

Query: 14  GKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDP 73
           G SV P P            NC P+Y+R +LN +P T +LLK S +P AL++Q  A    
Sbjct: 164 GTSVYPSP----------YANCPPKYVRSTLNAVPTTHSLLKKSKLPFALVIQPYAALHD 213

Query: 74  SEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGV 118
           SEDPIPV+   +  + RC  CR Y NPF+ F+D+G  + CN C +
Sbjct: 214 SEDPIPVIP--DQVISRCRRCRSYINPFVTFLDHGHRWRCNMCNL 256

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.

Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663)

>sp|A1DP06|SEC24_NEOFI Protein transport protein SEC24 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sec24 PE=3 SV=1

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 61/105 (58%), Gaps = 12/105 (11%)

Query: 14  GKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDP 73
           G SV P P          T NC P+Y+R +LN +P T +LLK S +P AL++Q  A    
Sbjct: 179 GTSVYPSP----------TANCPPKYVRSTLNAVPTTHSLLKKSKLPFALVIQPYASLRD 228

Query: 74  SEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGV 118
           +EDPIPV+   +  + RC  CR Y NPF+ F+D+G  + CN C +
Sbjct: 229 AEDPIPVIP--DQVISRCRRCRSYINPFVTFLDHGHRWRCNMCNL 271

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.

Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117)

>sp|A2QSG6|SEC24_ASPNC Protein transport protein sec24 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sec24 PE=3 SV=1

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 60/105 (57%), Gaps = 12/105 (11%)

Query: 14  GKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDP 73
           G SV P P            NC P+Y+R +LN +P T +LLK S +P AL++Q  A    
Sbjct: 179 GTSVYPSP----------YANCPPKYVRSTLNAVPTTSSLLKKSKLPFALVIQPYAALHD 228

Query: 74  SEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGV 118
           SEDP+PVV   +  + RC  CR Y NPF+ F+D+G  + CN C +
Sbjct: 229 SEDPVPVVP--DQVISRCRRCRSYINPFVTFLDHGHRWRCNMCNL 271

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.

Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)

>sp|Q5B6W0|SEC24_EMENI Protein transport protein sec24 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=sec24 PE=3 SV=1

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 62/105 (59%), Gaps = 8/105 (7%)

Query: 19  PPPPV-----TSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDP 73
           PPPP+     TS Y      NC P+Y+R +LN +P T +LLK S +P AL++Q  A    
Sbjct: 159 PPPPIVLAPGTSVY-PSPYANCPPKYVRSTLNAVPTTHSLLKKSKLPFALVIQPYAALHD 217

Query: 74  SEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGV 118
           +ED +PV+   +  + RC  CR Y NPF+ F+D+G  + CN C +
Sbjct: 218 AEDQVPVIP--DQVISRCRRCRSYINPFVTFLDHGHRWRCNMCNL 260

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
359493759	1124	PREDICTED: protein transport protein Sec	0.835	0.104	0.666	1e-41
224123334	1103	predicted protein [Populus trichocarpa]	0.814	0.103	0.684	1e-41
255542372	1094	Protein transport protein Sec24C, putati	0.835	0.106	0.658	1e-40
255545386	1056	Protein transport protein Sec24C, putati	0.835	0.110	0.641	1e-39
7270168	1069	putative protein [Arabidopsis thaliana]	0.828	0.108	0.655	1e-39
443609449	1092	Sec24-like transport protein [Arabidopsi	0.828	0.106	0.655	1e-39
334187094	1080	sec24-like transport protein [Arabidopsi	0.828	0.107	0.655	1e-39
297802748	1067	hypothetical protein ARALYDRAFT_491448 [	0.828	0.108	0.655	2e-39
7486407	1008	hypothetical protein F4D11.160 - Arabido	0.828	0.115	0.655	2e-39
224131342	1080	predicted protein [Populus trichocarpa]	0.814	0.105	0.649	4e-38

>gi|359493759|ref|XP_002279640.2| PREDICTED: protein transport protein Sec24-like At4g32640-like [Vitis vinifera] gi|302143220|emb|CBI20515.3| unnamed protein product [Vitis vinifera]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/117 (66%), Positives = 94/117 (80%)

Query: 1   MSSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMP 60
           + ++SVIL+ETRQG    PPPP TS YIV+DTGNCSPRY+RC++NQIPCT +LL  S M 
Sbjct: 372 IPNTSVILHETRQGNQANPPPPATSDYIVRDTGNCSPRYMRCTINQIPCTADLLTTSGMQ 431

Query: 61  SALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG 117
            AL+VQ LALP PSE+PI VVDFGESG VRC  C+GY NPFM+F+D G+ F+CN CG
Sbjct: 432 LALLVQPLALPHPSEEPIQVVDFGESGPVRCSRCKGYINPFMKFIDQGRRFICNLCG 488

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123334|ref|XP_002319053.1| predicted protein [Populus trichocarpa] gi|222857429|gb|EEE94976.1| predicted protein [Populus trichocarpa]

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/114 (68%), Positives = 91/114 (79%)

Query: 4   SSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSAL 63
           SSVIL++TR G    PPPP TS YIV DTGNCSPRY+RC++NQIPCT +LL  S MP AL
Sbjct: 328 SSVILHDTRAGNQANPPPPATSDYIVSDTGNCSPRYMRCTINQIPCTVDLLSTSGMPLAL 387

Query: 64  MVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG 117
           +VQ LALP PSEDP+ VVDFGESG VRC  C+GY NPFM+F+D G+ F+CN CG
Sbjct: 388 LVQPLALPHPSEDPVQVVDFGESGPVRCSRCKGYINPFMKFIDQGRQFICNLCG 441

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542372|ref|XP_002512249.1| Protein transport protein Sec24C, putative [Ricinus communis] gi|223548210|gb|EEF49701.1| Protein transport protein Sec24C, putative [Ricinus communis]

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/117 (65%), Positives = 92/117 (78%)

Query: 1   MSSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMP 60
           + SSSV L++TRQG    PPPP TS YIV+DTGNCSPRY+RC++NQIPCT +L+  S M 
Sbjct: 340 IPSSSVTLHDTRQGNQANPPPPATSDYIVRDTGNCSPRYMRCTINQIPCTVDLVNTSGMQ 399

Query: 61  SALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG 117
            AL+VQ  ALP PSE+PI VVDFGESG VRC  C+GY NPFM+F+D GK F+CN CG
Sbjct: 400 LALLVQPFALPHPSEEPIQVVDFGESGPVRCSRCKGYINPFMKFIDQGKRFICNLCG 456

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545386|ref|XP_002513753.1| Protein transport protein Sec24C, putative [Ricinus communis] gi|223546839|gb|EEF48336.1| Protein transport protein Sec24C, putative [Ricinus communis]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/117 (64%), Positives = 93/117 (79%)

Query: 1   MSSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMP 60
           + SS++I++ETRQG    PPPP TS+Y+V+DTGNCSPRY+RC++NQIPCT +LL  S M 
Sbjct: 337 IPSSTIIVHETRQGNQANPPPPATSEYMVRDTGNCSPRYMRCTINQIPCTVDLLNTSGMQ 396

Query: 61  SALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG 117
            AL+VQ LAL  PSE+PI VVDFGESG VRC  C+GY NPFM F+D G+ F+CN CG
Sbjct: 397 LALLVQPLALLPPSEEPIQVVDFGESGPVRCSRCKGYINPFMRFIDQGRRFICNLCG 453

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7270168|emb|CAB79981.1| putative protein [Arabidopsis thaliana]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 90/116 (77%)

Query: 2   SSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
           SSSS  ++ETRQ     PPPP TS Y+V+DTGNCSPRY+RC++NQIPCT +LL  S M  
Sbjct: 341 SSSSPTVFETRQSNQANPPPPATSDYVVRDTGNCSPRYMRCTINQIPCTVDLLSTSGMQL 400

Query: 62  ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG 117
           ALMVQ LAL  PSE+PI VVDFGE G VRC  C+GY NPFM+F+D G+ F+CNFCG
Sbjct: 401 ALMVQPLALSHPSEEPIQVVDFGEGGPVRCSRCKGYINPFMKFIDQGRKFICNFCG 456

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|443609449|dbj|BAM76809.1| Sec24-like transport protein [Arabidopsis thaliana]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 90/116 (77%)

Query: 2   SSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
           SSSS  ++ETRQ     PPPP TS Y+V+DTGNCSPRY+RC++NQIPCT +LL  S M  
Sbjct: 341 SSSSPTVFETRQSNQANPPPPATSDYVVRDTGNCSPRYMRCTINQIPCTVDLLSTSGMQL 400

Query: 62  ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG 117
           ALMVQ LAL  PSE+PI VVDFGE G VRC  C+GY NPFM+F+D G+ F+CNFCG
Sbjct: 401 ALMVQPLALSHPSEEPIQVVDFGEGGPVRCSRCKGYINPFMKFIDQGRKFICNFCG 456

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187094|ref|NP_194990.5| sec24-like transport protein [Arabidopsis thaliana] gi|334187096|ref|NP_001119101.5| sec24-like transport protein [Arabidopsis thaliana] gi|347595780|sp|Q9M081.3|SC24B_ARATH RecName: Full=Protein transport protein Sec24-like At4g32640 gi|332660694|gb|AEE86094.1| sec24-like transport protein [Arabidopsis thaliana] gi|332660695|gb|AEE86095.1| sec24-like transport protein [Arabidopsis thaliana]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 90/116 (77%)

Query: 2   SSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
           SSSS  ++ETRQ     PPPP TS Y+V+DTGNCSPRY+RC++NQIPCT +LL  S M  
Sbjct: 341 SSSSPTVFETRQSNQANPPPPATSDYVVRDTGNCSPRYMRCTINQIPCTVDLLSTSGMQL 400

Query: 62  ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG 117
           ALMVQ LAL  PSE+PI VVDFGE G VRC  C+GY NPFM+F+D G+ F+CNFCG
Sbjct: 401 ALMVQPLALSHPSEEPIQVVDFGEGGPVRCSRCKGYINPFMKFIDQGRKFICNFCG 456

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802748|ref|XP_002869258.1| hypothetical protein ARALYDRAFT_491448 [Arabidopsis lyrata subsp. lyrata] gi|297315094|gb|EFH45517.1| hypothetical protein ARALYDRAFT_491448 [Arabidopsis lyrata subsp. lyrata]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 90/116 (77%)

Query: 2   SSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
           SSSS  ++ETRQ     PPPP TS Y+V+DTGNCSPRY+RC++NQIPCT +LL  S M  
Sbjct: 341 SSSSPTVFETRQNNQANPPPPATSDYVVRDTGNCSPRYMRCTINQIPCTVDLLSTSGMQL 400

Query: 62  ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG 117
           ALMVQ LAL  PSE+PI VVDFGE G VRC  C+GY NPFM+F+D G+ F+CNFCG
Sbjct: 401 ALMVQPLALSHPSEEPIQVVDFGEGGPVRCSRCKGYINPFMKFIDQGRKFICNFCG 456

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7486407|pir||T04462 hypothetical protein F4D11.160 - Arabidopsis thaliana gi|3063706|emb|CAA18597.1| putative protein [Arabidopsis thaliana]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 90/116 (77%)

Query: 2   SSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
           SSSS  ++ETRQ     PPPP TS Y+V+DTGNCSPRY+RC++NQIPCT +LL  S M  
Sbjct: 341 SSSSPTVFETRQSNQANPPPPATSDYVVRDTGNCSPRYMRCTINQIPCTVDLLSTSGMQL 400

Query: 62  ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG 117
           ALMVQ LAL  PSE+PI VVDFGE G VRC  C+GY NPFM+F+D G+ F+CNFCG
Sbjct: 401 ALMVQPLALSHPSEEPIQVVDFGEGGPVRCSRCKGYINPFMKFIDQGRKFICNFCG 456

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131342|ref|XP_002328515.1| predicted protein [Populus trichocarpa] gi|222838230|gb|EEE76595.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 74/114 (64%), Positives = 88/114 (77%)

Query: 4   SSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSAL 63
           SSVIL++TR G    PPPP TS YIV DTGNCSPRY+RC++NQIPCT +LL  S M  AL
Sbjct: 321 SSVILHDTRAGNQANPPPPATSDYIVTDTGNCSPRYMRCTINQIPCTVDLLSTSGMQLAL 380

Query: 64  MVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG 117
           +VQ LALP  SE+ + VVDFGESG VRC  C+GY NPFM+F+D G+ F+CN CG
Sbjct: 381 LVQPLALPHSSEEAVQVVDFGESGPVRCSRCKGYINPFMKFIDQGRRFICNLCG 434

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
TAIR|locus:2100202	1096	CEF "AT3G44340" [Arabidopsis t	0.828	0.105	0.594	1.7e-32
ZFIN|ZDB-GENE-030131-4487	1241	sec24c "SEC24 family, member C	0.671	0.075	0.468	6.4e-20
UNIPROTKB|E1BUD8	1119	SEC24C "Uncharacterized protei	0.664	0.083	0.494	7.1e-20
UNIPROTKB|E1BIU0	1094	SEC24C "Uncharacterized protei	0.671	0.085	0.489	1.8e-19
UNIPROTKB|E7EP00	975	SEC24C "Protein transport prot	0.671	0.096	0.478	2e-19
UNIPROTKB|G5EA31	1042	SEC24C "SEC24 related gene fam	0.671	0.090	0.478	2.2e-19
UNIPROTKB|P53992	1094	SEC24C "Protein transport prot	0.671	0.085	0.478	2.4e-19
UNIPROTKB|E2RE90	1096	SEC24C "Uncharacterized protei	0.671	0.085	0.478	2.4e-19
UNIPROTKB|J9JHK6	1119	SEC24C "Uncharacterized protei	0.671	0.084	0.478	2.4e-19
ASPGD|ASPL0000039645	1031	AN3080 [Emericella nidulans (t	0.642	0.087	0.477	4.5e-19

TAIR|locus:2100202 CEF "AT3G44340" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 1.7e-32, P = 1.7e-32
 Identities = 69/116 (59%), Positives = 83/116 (71%)

Query:     2 SSSSVILYETRQGKSVKXXXXVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
             SSSS I+YETR           T  YI +DTGN SPRY+RC++NQIPCT +LL  S M  
Sbjct:   344 SSSSPIVYETRVENKANPPPPTTVDYITRDTGNSSPRYMRCTINQIPCTVDLLSTSGMQL 403

Query:    62 ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG 117
             AL+VQ +AL  PSE+PI VVDFGESG VRC  C+GY NPFM+F+D G+ F+CN CG
Sbjct:   404 ALIVQPMALSHPSEEPIQVVDFGESGPVRCSRCKGYVNPFMKFIDQGRKFICNLCG 459

GO:0005215 "transporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

ZFIN|ZDB-GENE-030131-4487 sec24c "SEC24 family, member C (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 250 (93.1 bits), Expect = 6.4e-20, P = 6.4e-20
 Identities = 44/94 (46%), Positives = 62/94 (65%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             VT+++ VKD GN SPRYIRC+   +PC  ++ K S +P A +++ LA   P E P  +VD
Sbjct:   504 VTTRFQVKDQGNASPRYIRCTAYNMPCNSDMAKQSQVPLAAVIKPLATLPPDESPPYLVD 563

Query:    83 FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFC 116
              GESG +RC  C+ Y  PFM+F++ G+ F C FC
Sbjct:   564 HGESGPIRCNRCKAYMCPFMQFIEGGRRFQCGFC 597

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|E1BUD8 SEC24C "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 249 (92.7 bits), Expect = 7.1e-20, P = 7.1e-20
 Identities = 47/95 (49%), Positives = 65/95 (68%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIP-VV 81
             VT+ ++VKD GN SPRYIRC+   IPCT ++ K S +P A +++ LA   P E+ +P +V
Sbjct:   382 VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQSQVPLAAVIKPLATLPP-EETLPYLV 440

Query:    82 DFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFC 116
             D GESG VRC  C+ Y  PFM+F++ G+ F C FC
Sbjct:   441 DHGESGPVRCNRCKAYMCPFMQFIEGGRRFQCCFC 475

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BIU0 SEC24C "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 245 (91.3 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 46/94 (48%), Positives = 62/94 (65%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct:   357 VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 416

Query:    83 FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFC 116
              GESG +RC  C+ Y  PFM+FV+ G+ F C FC
Sbjct:   417 HGESGPLRCNRCKAYMCPFMQFVEGGRRFQCCFC 450

GO:0005634 "nucleus" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E7EP00 SEC24C "Protein transport protein Sec24C" [Homo sapiens (taxid:9606)]

 Score = 244 (91.0 bits), Expect = 2.0e-19, P = 2.0e-19
 Identities = 45/94 (47%), Positives = 62/94 (65%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct:   238 VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 297

Query:    83 FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFC 116
              GESG +RC  C+ Y  PFM+F++ G+ F C FC
Sbjct:   298 HGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFC 331

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|G5EA31 SEC24C "SEC24 related gene family, member C (S. cerevisiae), isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 244 (91.0 bits), Expect = 2.2e-19, P = 2.2e-19
 Identities = 45/94 (47%), Positives = 62/94 (65%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct:   357 VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 416

Query:    83 FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFC 116
              GESG +RC  C+ Y  PFM+F++ G+ F C FC
Sbjct:   417 HGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFC 450

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|P53992 SEC24C "Protein transport protein Sec24C" [Homo sapiens (taxid:9606)]

 Score = 244 (91.0 bits), Expect = 2.4e-19, P = 2.4e-19
 Identities = 45/94 (47%), Positives = 62/94 (65%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct:   357 VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 416

Query:    83 FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFC 116
              GESG +RC  C+ Y  PFM+F++ G+ F C FC
Sbjct:   417 HGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFC 450

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=NAS;TAS

GO:0030127 "COPII vesicle coat" evidence=NAS

GO:0003674 "molecular_function" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0048208 "COPII vesicle coating" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E2RE90 SEC24C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 244 (91.0 bits), Expect = 2.4e-19, P = 2.4e-19
 Identities = 45/94 (47%), Positives = 62/94 (65%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct:   359 VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 418

Query:    83 FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFC 116
              GESG +RC  C+ Y  PFM+F++ G+ F C FC
Sbjct:   419 HGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFC 452

GO:0005634 "nucleus" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|J9JHK6 SEC24C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 244 (91.0 bits), Expect = 2.4e-19, P = 2.4e-19
 Identities = 45/94 (47%), Positives = 62/94 (65%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct:   382 VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 441

Query:    83 FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFC 116
              GESG +RC  C+ Y  PFM+F++ G+ F C FC
Sbjct:   442 HGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFC 475

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

ASPGD|ASPL0000039645 AN3080 [Emericella nidulans (taxid:162425)]

 Score = 241 (89.9 bits), Expect = 4.5e-19, P = 4.5e-19
 Identities = 43/90 (47%), Positives = 57/90 (63%)

Query:    27 YIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGES 86
             ++  D GN SP+Y R +LN IP + + L  + +P  +++Q LA  DP E PIPV+DFG++
Sbjct:   242 FVAHDQGNSSPKYARLTLNNIPSSSDFLSSTGLPLGMILQPLARLDPGEQPIPVLDFGDA 301

Query:    87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFC 116
             G  RC  CR Y NPFM F   G  FVCN C
Sbjct:   302 GPPRCRRCRTYINPFMSFRSGGNKFVCNMC 331

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	140
COG5028	861	COG5028, COG5028, Vesicle coat complex COPII, subu	4e-24
pfam04810	39	pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger	2e-08
PTZ00395	1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	6e-07

>gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

 Score = 96.4 bits (240), Expect = 4e-24
 Identities = 39/99 (39%), Positives = 63/99 (63%), Gaps = 2/99 (2%)

Query: 20  PPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIP 79
            PP+T+ ++  +  NCSP+Y+R ++  IP T +LLK S +P  L+++      P EDP+P
Sbjct: 133 VPPLTTNFVGSEQSNCSPKYVRSTMYAIPETNDLLKKSKIPFGLVIRPFLELYPEEDPVP 192

Query: 80  VVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGV 118
           +V+ G   +VRC  CR Y NPF++F++ G+ + CN C  
Sbjct: 193 LVEDGS--IVRCRRCRSYINPFVQFIEQGRKWRCNICRS 229

Length = 861

>gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger

 Score = 46.8 bits (112), Expect = 2e-08
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 89  VRCCCCRGYRNPFMEFVDNGKSFVCNFCG 117
           VRC  CR Y NP+ +F   G+ + CN CG
Sbjct: 2   VRCRRCRAYLNPYCQFDFGGRRWTCNLCG 30

COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is found to be zinc binding domain. Length = 39

>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional

 Score = 47.0 bits (111), Expect = 6e-07
 Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 8/104 (7%)

Query: 20  PPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSE--DP 77
           PP     YI  DTG   PR+++ +L QIP     LKLS +P  ++V   A  +  E  D 
Sbjct: 635 PPSYYQPYISIDTGKADPRFLKSTLYQIPLFSETLKLSQIPFGIIVNPFACLNEGEGIDK 694

Query: 78  IPVVDFGESG-----LVRCCCCRGYRNPFMEFVDNGKSFVCNFC 116
           I + D          ++RC  C GY +  +   D   S  C FC
Sbjct: 695 IDMKDIINDKEENIEILRCPKCLGYLHATI-LEDISSSVQCVFC 737

Length = 1560

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
KOG1984	1007	consensus Vesicle coat complex COPII, subunit SFB3	100.0
COG5028	861	Vesicle coat complex COPII, subunit SEC24/subunit	99.96
KOG1985	887	consensus Vesicle coat complex COPII, subunit SEC2	99.93
PLN00162	761	transport protein sec23; Provisional	99.93
PTZ00395	1560	Sec24-related protein; Provisional	99.9
KOG1986	745	consensus Vesicle coat complex COPII, subunit SEC2	99.79
COG5047	755	SEC23 Vesicle coat complex COPII, subunit SEC23 [I	99.73
PF04810	40	zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro:	99.73
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	90.31
TIGR01053	31	LSD1 zinc finger domain, LSD1 subclass. This model	89.19
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	88.48
PF10058	54	DUF2296: Predicted integral membrane metal-binding	88.22
PF09082	68	DUF1922: Domain of unknown function (DUF1922); Int	87.83
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	85.69
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	83.86
smart00661	52	RPOL9 RNA polymerase subunit 9.	83.11
PF02318	118	FYVE_2: FYVE-type zinc finger; InterPro: IPR003315	80.16

>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.3e-35  Score=265.21  Aligned_cols=107  Identities=52%  Similarity=1.115  Sum_probs=104.0

Q ss_pred             CCCCCCCceeEecccCCCCCCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCCCCCCceeccCCCCeeecCCCCcE
Q 032449           18 KPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGY   97 (140)
Q Consensus        18 ~~pp~~~~~~~~~d~gn~~p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~e~~vp~v~~~~~~~~RC~~C~aY   97 (140)
                      ..||++||+|++.|||||+|+|||+|+|.||.|.++++.++||||+||+||+.+.+.|+++|+||+++.+++||+||+||
T Consensus       268 ~~PPl~TTd~~~~DqGN~sPr~mr~T~Y~iP~T~Dl~~as~iPLalvIqPfa~l~p~E~~~~vVd~g~sgPvRC~RCkaY  347 (1007)
T KOG1984|consen  268 QPPPLVTTDFFIQDQGNCSPRFMRCTMYTIPCTNDLLKASQIPLALVIQPFATLTPNEAPVPVVDLGESGPVRCNRCKAY  347 (1007)
T ss_pred             CCCCCcccceEEeccCCCCcchheeecccCCccHhHHHhcCCcceeEecccccCCcccCCCceecCCCCCCcchhhhhhh
Confidence            36999999999999999999999999999999999999999999999999999988888999999999999999999999


Q ss_pred             EcCceeEEeCCcEEEEccCCCCCCCCC
Q 032449           98 RNPFMEFVDNGKSFVCNFCGVWMLMRG  124 (140)
Q Consensus        98 iNPf~~~~~~g~~w~C~lC~~~N~lp~  124 (140)
                      ||||++|+++||+|+||||+.+|.+|.
T Consensus       348 inPFmqF~~~gr~f~Cn~C~~~n~vp~  374 (1007)
T KOG1984|consen  348 INPFMQFIDGGRKFICNFCGSKNQVPD  374 (1007)
T ss_pred             cCcceEEecCCceEEecCCCccccCCh
Confidence            999999999999999999999999984

>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

Probab=99.96  E-value=1.6e-30  Score=233.58  Aligned_cols=104  Identities=37%  Similarity=0.773  Sum_probs=96.3

Q ss_pred             CCCCCCceeEecccCCCCCCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCCCCCCceeccCCCCeeecCCCCcEE
Q 032449           19 PPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYR   98 (140)
Q Consensus        19 ~pp~~~~~~~~~d~gn~~p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~e~~vp~v~~~~~~~~RC~~C~aYi   98 (140)
                      .||. ++.++..+++||+|+|||+|+|+||.+.+++++++||||+||+||.++.++|.++|++..  ..|+||++||+||
T Consensus       133 ~ppl-tt~~~~~e~~n~~p~yvrsT~yaiP~t~dl~~~skiPfgLVI~Pf~~l~~e~~~vpl~~d--~~ivRCrrCrsYi  209 (861)
T COG5028         133 VPPL-TTNFVGSEQSNCSPKYVRSTMYAIPETNDLLKKSKIPFGLVIRPFLELYPEEDPVPLVED--GSIVRCRRCRSYI  209 (861)
T ss_pred             CCCc-ccceeeeccCCCCHHHHHHHHhhCCCchhHHHhcCCCceEEeehhhhcCccCCCCccCCC--CcchhhhhhHhhc
Confidence            4665 999999999999999999999999999999999999999999999998887777888763  3489999999999


Q ss_pred             cCceeEEeCCcEEEEccCCCCCCCCCC
Q 032449           99 NPFMEFVDNGKSFVCNFCGVWMLMRGL  125 (140)
Q Consensus        99 NPf~~~~~~g~~w~C~lC~~~N~lp~~  125 (140)
                      |||.+|+++|++|+||+|+.+|.+|.-
T Consensus       210 NPfv~fi~~g~kw~CNiC~~kN~vp~~  236 (861)
T COG5028         210 NPFVQFIEQGRKWRCNICRSKNDVPEG  236 (861)
T ss_pred             CceEEEecCCcEEEEeeccccccCccc
Confidence            999999999999999999999999963

>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.1e-27  Score=212.78  Aligned_cols=91  Identities=44%  Similarity=0.868  Sum_probs=83.0

Q ss_pred             ccCCCCCCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCCCCCCceeccCCCCeeecCCCCcEEcCceeEEeCCcE
Q 032449           31 DTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKS  110 (140)
Q Consensus        31 d~gn~~p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~e~~vp~v~~~~~~~~RC~~C~aYiNPf~~~~~~g~~  110 (140)
                      ..-||+|+|||+|+++||++.++++|+|||||++|+||++.+ ++.++|++.  ...|+||++||+|||||+.|++.|++
T Consensus       164 ~~~nc~p~y~RsTl~~iP~t~sLl~kskLPlglvv~Pf~~~~-d~~~~p~~~--~~~IvRCr~CRtYiNPFV~fid~gr~  240 (887)
T KOG1985|consen  164 ESSNCSPSYVRSTLSAIPQTQSLLKKSKLPLGLVVHPFAHLD-DIDPLPVIT--STLIVRCRRCRTYINPFVEFIDQGRR  240 (887)
T ss_pred             cccCCCHHHHHHHHHhCCccHHHHHhcCCCceEEEeeccccc-ccCCCCccc--CCceeeehhhhhhcCCeEEecCCCce
Confidence            457999999999999999999999999999999999999876 334566664  57899999999999999999999999


Q ss_pred             EEEccCCCCCCCCC
Q 032449          111 FVCNFCGVWMLMRG  124 (140)
Q Consensus       111 w~C~lC~~~N~lp~  124 (140)
                      |+||+|+..|.+|.
T Consensus       241 WrCNlC~~~NdvP~  254 (887)
T KOG1985|consen  241 WRCNLCGRVNDVPD  254 (887)
T ss_pred             eeechhhhhcCCcH
Confidence            99999999999995

>PLN00162 transport protein sec23; Provisional

Probab=99.93  E-value=4.7e-26  Score=207.85  Aligned_cols=86  Identities=23%  Similarity=0.309  Sum_probs=79.1

Q ss_pred             CCCCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCCCCCCceeccCCCCeeecCCCCcEEcCceeEEeCCcEEEEc
Q 032449           35 CSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCN  114 (140)
Q Consensus        35 ~~p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~e~~vp~v~~~~~~~~RC~~C~aYiNPf~~~~~~g~~w~C~  114 (140)
                      .+.++||+|||+||.+++++++++||||++|+||++..    ++|+++   .+|+||++|+|||||||+|++++++|+||
T Consensus         7 e~~~gvR~s~n~~P~t~~~~~~~~iPlg~v~tPl~~~~----~vp~v~---~~pvRC~~CraylNPf~~~d~~~~~W~C~   79 (761)
T PLN00162          7 EAIDGVRMSWNVWPSSKIEASKCVIPLAALYTPLKPLP----ELPVLP---YDPLRCRTCRAVLNPYCRVDFQAKIWICP   79 (761)
T ss_pred             cccCceEeeeecCCCCHHHHhcCCCCeEEEEecCCcCC----CCCcCC---CCCCccCCCcCEECCceEEecCCCEEEcc
Confidence            46689999999999999999999999999999998763    488887   57999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCc
Q 032449          115 FCGVWMLMRGLSS  127 (140)
Q Consensus       115 lC~~~N~lp~~~~  127 (140)
                      ||+..|.+|..+.
T Consensus        80 ~C~~~N~~P~~Y~   92 (761)
T PLN00162         80 FCFQRNHFPPHYS   92 (761)
T ss_pred             CCCCCCCCchHhc
Confidence            9999999997654

>PTZ00395 Sec24-related protein; Provisional

Probab=99.90  E-value=6e-25  Score=206.35  Aligned_cols=125  Identities=30%  Similarity=0.457  Sum_probs=110.4

Q ss_pred             CceEEeccCCCCCCCCCCCCceeEecccCCCCCCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCCCCCCceeccC
Q 032449            5 SVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFG   84 (140)
Q Consensus         5 ~~~~~~t~~~~~~~~pp~~~~~~~~~d~gn~~p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~e~~vp~v~~~   84 (140)
                      ...+|+|++..   .||+.+++|+++|+|||+|+|||+|||.||.+.++++.+.|||||||+||+...++| .||.++..
T Consensus       623 ~~~~~~t~k~~---~pp~~~~~~~~~dtgn~dP~~~r~tmY~iP~~~~~~~~~~iP~gi~v~Pfa~~~~~e-~~~~~~~~  698 (1560)
T PTZ00395        623 NLKVFETCKYI---SPPSYYQPYISIDTGKADPRFLKSTLYQIPLFSETLKLSQIPFGIIVNPFACLNEGE-GIDKIDMK  698 (1560)
T ss_pred             cchhhhhccCC---CCCCCCCceEEeecCCCChhhhhhhhhcCcchHHHHHhcCCCceeecchhhhcCCCC-CCcccchh
Confidence            34789999887   589999999999999999999999999999999999999999999999999988776 58888765


Q ss_pred             --------CCCeeecCCCCcEEcCceeEEeCCcEEEEccCCCCCCCC-CCCcccccccc
Q 032449           85 --------ESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMR-GLSSVEGQLNL  134 (140)
Q Consensus        85 --------~~~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~lp-~~~~~~~~~~~  134 (140)
                              ...|+||.+|++|+|+++.++.. +++.|+||+..+.+. +...+.-||+.
T Consensus       699 ~~~~d~~~~~~~~rc~~c~~y~~~~~~~~~~-~~~~c~~c~~~~~i~e~~~~~~~~~~~  756 (1560)
T PTZ00395        699 DIINDKEENIEILRCPKCLGYLHATILEDIS-SSVQCVFCDTDFLINENVLFDIFQYNE  756 (1560)
T ss_pred             hcccchhhccceeecchhHhhhcchheeccc-ceEEEEecCCcchhhHHHHHHHHHHhh
Confidence                    24789999999999999999875 899999999999984 46666666654

>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=2.7e-20  Score=166.59  Aligned_cols=97  Identities=22%  Similarity=0.261  Sum_probs=87.0

Q ss_pred             CCCCCCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCCCCCCceeccCCCCeeecCCCCcEEcCceeEEeCCcEEE
Q 032449           33 GNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFV  112 (140)
Q Consensus        33 gn~~p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~e~~vp~v~~~~~~~~RC~~C~aYiNPf~~~~~~g~~w~  112 (140)
                      .+.+.+.||+|||+||.++....++.+|++++++||.+..    .+|.+.   ++|+||++|+||+||||.+|.+.+.|+
T Consensus         5 ~~e~~dGvR~twnvwPs~~~~~~~~vvPla~lytPl~e~~----~~~~~~---y~P~~C~~C~AvlNPyc~vd~~a~~W~   77 (745)
T KOG1986|consen    5 DIEEIDGVRFTWNVWPSTRAEASRTVVPLACLYTPLKERP----DLPPIQ---YDPLRCSKCGAVLNPYCSVDFRAKSWI   77 (745)
T ss_pred             ccccCCCcccccccCCCcccccccccccHHHhccccccCC----CCCccC---CCCchhccchhhcCcceeecccCceEe
Confidence            3567899999999999999999999999999999998653    256664   789999999999999999999999999


Q ss_pred             EccCCCCCCCCCCCcccccccccc
Q 032449          113 CNFCGVWMLMRGLSSVEGQLNLLL  136 (140)
Q Consensus       113 C~lC~~~N~lp~~~~~~~~~~~~~  136 (140)
                      |+||.+.|.+|..|......++|.
T Consensus        78 CpfC~qrN~~p~~Y~~is~~n~P~  101 (745)
T KOG1986|consen   78 CPFCNQRNPFPPHYSGISENNLPP  101 (745)
T ss_pred             ccccccCCCCChhhcccCccCCCh
Confidence            999999999999888888877764

>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]

Probab=99.73  E-value=1.1e-18  Score=154.21  Aligned_cols=97  Identities=23%  Similarity=0.335  Sum_probs=87.8

Q ss_pred             CCCCCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCCCCCCceeccCCCCeeecCC-CCcEEcCceeEEeCCcEEE
Q 032449           34 NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC-CRGYRNPFMEFVDNGKSFV  112 (140)
Q Consensus        34 n~~p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~e~~vp~v~~~~~~~~RC~~-C~aYiNPf~~~~~~g~~w~  112 (140)
                      +.+.++||+|||+||.++....++.+|++++++||.+.+    .+++.   .+.|+.|.. |+||+||||.++.+.+.|+
T Consensus         6 iee~dgir~twnvfpat~~da~~~~iPia~lY~Pl~e~~----~~~v~---~yepv~C~~pC~avlnpyC~id~r~~~W~   78 (755)
T COG5047           6 IEENDGIRLTWNVFPATRGDATRTVIPIACLYTPLHEDD----ALTVN---YYEPVKCTAPCKAVLNPYCHIDERNQSWI   78 (755)
T ss_pred             hccccceEEEEecccCCccccccccccHHHhcccccccc----ccCcc---cCCCceecccchhhcCcceeeccCCceEe
Confidence            467889999999999999999999999999999998653    24444   378999999 9999999999999999999


Q ss_pred             EccCCCCCCCCCCCccccccccccC
Q 032449          113 CNFCGVWMLMRGLSSVEGQLNLLLQ  137 (140)
Q Consensus       113 C~lC~~~N~lp~~~~~~~~~~~~~~  137 (140)
                      |+||+..|.||..+.+.++.+|||.
T Consensus        79 CpfCnqrn~lp~qy~~iS~~~Lple  103 (755)
T COG5047          79 CPFCNQRNTLPPQYRDISNANLPLE  103 (755)
T ss_pred             cceecCCCCCChhhcCCCcccCCcc
Confidence            9999999999999999999999874

>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.73  E-value=5.4e-19  Score=106.77  Aligned_cols=39  Identities=49%  Similarity=1.016  Sum_probs=27.7

Q ss_pred             CeeecCCCCcEEcCceeEEeCCcEEEEccCCCCCCCCCC
Q 032449           87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMRGL  125 (140)
Q Consensus        87 ~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~lp~~  125 (140)
                      +|+||++|+||||||++|++++++|+|+||++.|.||..
T Consensus         1 ~p~rC~~C~aylNp~~~~~~~~~~w~C~~C~~~N~lp~~   39 (40)
T PF04810_consen    1 GPVRCRRCRAYLNPFCQFDDGGKTWICNFCGTKNPLPPH   39 (40)
T ss_dssp             -S-B-TTT--BS-TTSEEETTTTEEEETTT--EEE--GG
T ss_pred             CccccCCCCCEECCcceEcCCCCEEECcCCCCcCCCCCC
Confidence            489999999999999999999999999999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=90.31  E-value=0.11  Score=34.04  Aligned_cols=32  Identities=34%  Similarity=0.827  Sum_probs=22.8

Q ss_pred             CceeccCCCCeeecCCCCcEEcCceeEEeCCcEEEEccCCCC
Q 032449           78 IPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVW  119 (140)
Q Consensus        78 vp~v~~~~~~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~  119 (140)
                      .|--+.|+..|.||++||-.          |..|+|+-||..
T Consensus        28 F~CPnCGe~~I~Rc~~CRk~----------g~~Y~Cp~CGF~   59 (61)
T COG2888          28 FPCPNCGEVEIYRCAKCRKL----------GNPYRCPKCGFE   59 (61)
T ss_pred             eeCCCCCceeeehhhhHHHc----------CCceECCCcCcc
Confidence            33446677789999999853          456778888764

>TIGR01053 LSD1 zinc finger domain, LSD1 subclass

Probab=89.19  E-value=0.35  Score=27.49  Aligned_cols=29  Identities=28%  Similarity=0.445  Sum_probs=22.5

Q ss_pred             eecCCCCcEEcCceeEEeCCcEEEEccCCCCCC
Q 032449           89 VRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWML  121 (140)
Q Consensus        89 ~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~  121 (140)
                      +.|..|++-|--    -.+..+++|.+|...|.
T Consensus         2 ~~C~~C~t~L~y----P~gA~~vrCs~C~~vt~   30 (31)
T TIGR01053         2 VVCGGCRTLLMY----PRGASSVRCALCQTVNL   30 (31)
T ss_pred             cCcCCCCcEeec----CCCCCeEECCCCCeEec
Confidence            578899988752    25678999999998774

This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=88.48  E-value=0.31  Score=28.43  Aligned_cols=33  Identities=21%  Similarity=0.516  Sum_probs=24.0

Q ss_pred             eeecCCCCcEEc-CceeEEeCCcEEEEccCCCCC
Q 032449           88 LVRCCCCRGYRN-PFMEFVDNGKSFVCNFCGVWM  120 (140)
Q Consensus        88 ~~RC~~C~aYiN-Pf~~~~~~g~~w~C~lC~~~N  120 (140)
                      +++|.+|++-.+ |--++...|++.+|.-|++.-
T Consensus         2 ~i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f   35 (37)
T PF13719_consen    2 IITCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVF   35 (37)
T ss_pred             EEECCCCCceEEcCHHHcccCCcEEECCCCCcEe
Confidence            478888887766 555566677888888888753

>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function []

Probab=88.22  E-value=0.37  Score=30.68  Aligned_cols=34  Identities=15%  Similarity=0.260  Sum_probs=24.7

Q ss_pred             CeeecCCCCcEEcCceeEEeCCcEEEEccCCCCC
Q 032449           87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWM  120 (140)
Q Consensus        87 ~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N  120 (140)
                      -.+-|++|++-=.-+-+-+...-+|+|..|+..|
T Consensus        21 ~aLIC~~C~~hNGla~~~~~~~i~y~C~~Cg~~N   54 (54)
T PF10058_consen   21 YALICSKCFSHNGLAPKEEFEEIQYRCPYCGALN   54 (54)
T ss_pred             eeEECcccchhhcccccccCCceEEEcCCCCCcC
Confidence            3567999987644332555555699999999987

>PF09082 DUF1922: Domain of unknown function (DUF1922); InterPro: IPR015166 Members of this family consist of a beta-sheet region followed by an alpha-helix and an unstructured C terminus

Probab=87.83  E-value=0.37  Score=32.26  Aligned_cols=30  Identities=27%  Similarity=0.635  Sum_probs=20.8

Q ss_pred             eeecCCCCcEEcCceeEEeCCcEEEEccCCCCCCCC
Q 032449           88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMR  123 (140)
Q Consensus        88 ~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~lp  123 (140)
                      |.|| +|+.|+    ..+++.++-+| .||....+.
T Consensus         3 ifrC-~Cgr~l----ya~e~~kTkkC-~CG~~l~vk   32 (68)
T PF09082_consen    3 IFRC-DCGRYL----YAKEGAKTKKC-VCGKTLKVK   32 (68)
T ss_dssp             EEEE-TTS--E----EEETT-SEEEE-TTTEEEE--
T ss_pred             EEEe-cCCCEE----EecCCcceeEe-cCCCeeeee
Confidence            7899 799986    35677789999 999888775

The beta-sheet region contains a CXCX...XCXC sequence with Cys residues located in two proximal loops and pointing towards each other. This precise function of this set of bacterial proteins is, as yet, unknown []. ; PDB: 1GH9_A.

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=85.69  E-value=0.63  Score=28.11  Aligned_cols=31  Identities=23%  Similarity=0.636  Sum_probs=21.7

Q ss_pred             eeecCCCCcEEcCceeEEeCCcEEEEccCCCCCCC
Q 032449           88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLM  122 (140)
Q Consensus        88 ~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~l  122 (140)
                      ..+|.+|++-+-    ++.....++|+.||....+
T Consensus         3 ~y~C~~CG~~~~----~~~~~~~~~Cp~CG~~~~~   33 (46)
T PRK00398          3 EYKCARCGREVE----LDEYGTGVRCPYCGYRILF   33 (46)
T ss_pred             EEECCCCCCEEE----ECCCCCceECCCCCCeEEE
Confidence            468999999553    3333347999999976543

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=83.86  E-value=0.5  Score=30.82  Aligned_cols=28  Identities=32%  Similarity=0.701  Sum_probs=19.4

Q ss_pred             ccCCCCeeecCCCCcEEcCceeEEeCCcEEEEccCCCC
Q 032449           82 DFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVW  119 (140)
Q Consensus        82 ~~~~~~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~  119 (140)
                      +.|+..|.||.+||-.-          ..|+|+-||..
T Consensus        30 nCG~~~I~RC~~CRk~~----------~~Y~CP~CGF~   57 (59)
T PRK14890         30 NCGEVIIYRCEKCRKQS----------NPYTCPKCGFE   57 (59)
T ss_pred             CCCCeeEeechhHHhcC----------CceECCCCCCc
Confidence            34555588999998544          45678888764

>smart00661 RPOL9 RNA polymerase subunit 9

Probab=83.11  E-value=0.74  Score=27.96  Aligned_cols=32  Identities=25%  Similarity=0.399  Sum_probs=21.7

Q ss_pred             ecCCCCcEEcCceeEEeCCcEEEEccCCCCCCCC
Q 032449           90 RCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMR  123 (140)
Q Consensus        90 RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~lp  123 (140)
                      -|.+|+..|-+-  -..++..|.|+-|+....+.
T Consensus         2 FCp~Cg~~l~~~--~~~~~~~~vC~~Cg~~~~~~   33 (52)
T smart00661        2 FCPKCGNMLIPK--EGKEKRRFVCRKCGYEEPIE   33 (52)
T ss_pred             CCCCCCCccccc--cCCCCCEEECCcCCCeEECC
Confidence            488898877332  22223589999999877664

>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A

Probab=80.16  E-value=1.3  Score=32.01  Aligned_cols=32  Identities=13%  Similarity=0.236  Sum_probs=26.1

Q ss_pred             eeecCCCCcEEcCceeEEe-CCcEEEEccCCCC
Q 032449           88 LVRCCCCRGYRNPFMEFVD-NGKSFVCNFCGVW  119 (140)
Q Consensus        88 ~~RC~~C~aYiNPf~~~~~-~g~~w~C~lC~~~  119 (140)
                      -..|..|+-.|..-|.+.. +...|.|.+|...
T Consensus        71 ~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k~  103 (118)
T PF02318_consen   71 GRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQKQ  103 (118)
T ss_dssp             CEEETTTTEEEETTSEEETSSSCCEEEHHHHHH
T ss_pred             CCcCCcCCccccCccCCcCCCCCCEEChhhHHH
Confidence            3889999999998888874 5679999999643

The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	140
3eh2_A	766	Crystal Structure Of The Human Copii-Coat Protein S		4e-21
3efo_B	770	Crystal Structure Of The Mammalian Copii-Coat Prote		2e-18
1pcx_A	810	Crystal Structure Of The Copii Coat Subunit, Sec24,		7e-13
1m2v_B	926	Crystal Structure Of The Yeast Sec2324 HETERODIMER		7e-13
3egd_B	748	Crystal Structure Of The Mammalian Copii-Coat Prote		1e-09
2nup_B	753	Crystal Structure Of The Human Sec23a24A HETERODIME		1e-09
3eh1_A	751	Crystal Structure Of The Human Copii-Coat Protein S		4e-09

>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c Length = 766

Iteration: 1
 Score = 96.7 bits (239), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 62/94 (65%)
Query: 23  VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
           VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct: 29  VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 88
Query: 83  FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFC 116
            GESG +RC  C+ Y  PFM+F++ G+ F C FC
Sbjct: 89  HGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFC 122

>pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 770

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 61/94 (64%)
Query: 23  VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
           VT+  +++D GN SPR+IRC+    PCT ++ K + +P A +++  A    +E P+ +V+
Sbjct: 33  VTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVN 92
Query: 83  FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFC 116
            GESG VRC  C+ Y  PFM+F++ G+ + C FC
Sbjct: 93  HGESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFC 126

>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24, Complexed With A Peptide From The Snare Protein Bet1 Length = 810

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 31  DTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGL-V 89
           +  N SP YIR +LN +P   +LLK S +P  L+++         DP P+    E GL V
Sbjct: 57  ELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPL---NEDGLIV 113
Query: 90  RCCCCRGYRNPFMEFVDNGKSFVCNFC 116
           RC  CR Y NPF+ F++ G+ + CNFC
Sbjct: 114 RCRRCRSYMNPFVTFIEQGRRWRCNFC 140

>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER Length = 926

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 31  DTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGL-V 89
           +  N SP YIR +LN +P   +LLK S +P  L+++         DP P+    E GL V
Sbjct: 173 ELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPL---NEDGLIV 229
Query: 90  RCCCCRGYRNPFMEFVDNGKSFVCNFC 116
           RC  CR Y NPF+ F++ G+ + CNFC
Sbjct: 230 RCRRCRSYMNPFVTFIEQGRRWRCNFC 256

>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 34  NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC 93
           NC+P   RC+L  IP T+ LL  + +P  L++       P +D + +     S +VRC  
Sbjct: 35  NCNPELFRCTLTSIPQTQALLNKAKLPLGLLLH------PFKDLVQLPVVTSSTIVRCRS 88
Query: 94  CRGYRNPFMEFVDNGKSFVCNFC 116
           CR Y NPF+ F+D  + + CN C
Sbjct: 89  CRTYINPFVSFLDQ-RRWKCNLC 110

>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 34  NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC 93
           NC+P   RC+L  IP T+ LL  + +P  L++       P +D + +     S +VRC  
Sbjct: 40  NCNPELFRCTLTSIPQTQALLNKAKLPLGLLLH------PFKDLVQLPVVTSSTIVRCRS 93
Query: 94  CRGYRNPFMEFVDNGKSFVCNFC 116
           CR Y NPF+ F+D  + + CN C
Sbjct: 94  CRTYINPFVSFLDQ-RRWKCNLC 115

>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 34  NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC 93
           NCSP   RC+L  IP T+ LL  + +P  L++       P  D   +     + +VRC  
Sbjct: 37  NCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLH------PFRDLTQLPVITSNTIVRCRS 90
Query: 94  CRGYRNPFMEFVDNGKSFVCNFC 116
           CR Y NPF+ F+D  + + CN C
Sbjct: 91  CRTYINPFVSFIDQ-RRWKCNLC 112

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	140
3efo_B	770	SEC24 related gene family, member D; copii, coat p	5e-31
3eh2_A	766	Protein transport protein SEC24C; copii-coat prote	1e-30
1pcx_A	810	Protein transport protein SEC24; 2.50A {Saccharomy	2e-24
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-23
2nut_A	769	Protein transport protein SEC23A; human copii SEC2	1e-23
3eh1_A	751	Protein transport protein SEC24B; copii coat prote	3e-19
1m2o_A	768	SEC23, protein transport protein SEC23, SEC23P; zi	2e-18

>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770

 Score =  115 bits (288), Expect = 5e-31
 Identities = 42/110 (38%), Positives = 67/110 (60%), Gaps = 2/110 (1%)

Query: 8   LYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQV 67
           +Y T     +  PP VT+  +++D GN SPR+IRC+    PCT ++ K + +P A +++ 
Sbjct: 20  VYATNTRGQI--PPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKP 77

Query: 68  LALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG 117
            A    +E P+ +V+ GESG VRC  C+ Y  PFM+F++ G+ + C FC 
Sbjct: 78  FATIPSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCN 127

>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766

 Score =  114 bits (285), Expect = 1e-30
 Identities = 47/99 (47%), Positives = 64/99 (64%)

Query: 19  PPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPI 78
            PP VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E   
Sbjct: 25  VPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASP 84

Query: 79  PVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG 117
            VVD GESG +RC  C+ Y  PFM+F++ G+ F C FC 
Sbjct: 85  YVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCS 123

>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810

 Score = 96.6 bits (239), Expect = 2e-24
 Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 5/110 (4%)

Query: 14  GKSVKPPP---PVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLAL 70
             ++ PPP   P     +  +  N SP YIR +LN +P   +LLK S +P  L+++    
Sbjct: 37  DLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQH 96

Query: 71  PDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWM 120
                DP P+ + G   +VRC  CR Y NPF+ F++ G+ + CNFC +  
Sbjct: 97  LYDDIDPPPLNEDGL--IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLAN 144

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 94.1 bits (233), Expect = 1e-23
 Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 2/98 (2%)

Query: 20  PPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIP 79
             P     +  +  N SP YIR +LN +P   +LLK S +P  L+++         DP P
Sbjct: 162 VIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPP 221

Query: 80  VVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG 117
           + + G   +VRC  CR Y NPF+ F++ G+ + CNFC 
Sbjct: 222 LNEDGL--IVRCRRCRSYMNPFVTFIEQGRRWRCNFCR 257

>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769

 Score = 94.2 bits (233), Expect = 1e-23
 Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 9/100 (9%)

Query: 23  VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             + Y+     N     +R S N  P +        +P A +   L          P + 
Sbjct: 4   GMTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLK-------ERPDLP 56

Query: 83  FGESGLVRCCC--CRGYRNPFMEFVDNGKSFVCNFCGVWM 120
             +   V C    CR   NP  +     K + CNFC    
Sbjct: 57  PIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRN 96

>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751

 Score = 81.9 bits (201), Expect = 3e-19
 Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 19  PPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPI 78
              PV +        NCSP   RC+L  IP T+ LL  + +P  L++     P      +
Sbjct: 22  VWAPVPNLNADLKKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLH----PFRDLTQL 77

Query: 79  PVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG 117
           PV+      +VRC  CR Y NPF+ F+D  + + CN C 
Sbjct: 78  PVITSNT--IVRCRSCRTYINPFVSFID-QRRWKCNLCY 113

>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768

 Score = 79.7 bits (195), Expect = 2e-18
 Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 5/85 (5%)

Query: 32  TGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRC 91
             N     +R + N  P T +    + +P   +   L       D + V  +    +   
Sbjct: 4   ETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLK----EYDELNVAPYNP-VVCSG 58

Query: 92  CCCRGYRNPFMEFVDNGKSFVCNFC 116
             C+   NP+        S+ C  C
Sbjct: 59  PHCKSILNPYCVIDPRNSSWSCPIC 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	140
3eh2_A	766	Protein transport protein SEC24C; copii-coat prote	100.0
3efo_B	770	SEC24 related gene family, member D; copii, coat p	100.0
1pcx_A	810	Protein transport protein SEC24; 2.50A {Saccharomy	99.97
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	99.97
3eh1_A	751	Protein transport protein SEC24B; copii coat prote	99.95
2nut_A	769	Protein transport protein SEC23A; human copii SEC2	99.94
1m2o_A	768	SEC23, protein transport protein SEC23, SEC23P; zi	99.92
2yrc_A	59	Protein transport protein SEC23A; zinc binding, co	99.74
1gh9_A	71	8.3 kDa protein (gene MTH1184); beta+alpha complex	86.38
2a20_A	62	Regulating synaptic membrane exocytosis protein 2;	85.16
1pft_A	50	TFIIB, PFTFIIBN; N-terminal domain, transcription	80.81

>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}

Probab=100.00  E-value=7.6e-37  Score=277.07  Aligned_cols=118  Identities=41%  Similarity=0.748  Sum_probs=111.0

Q ss_pred             eEEeccCCCCCCCCCCCCceeEecccCCCCCCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCCCCCCceeccCCC
Q 032449            7 ILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGES   86 (140)
Q Consensus         7 ~~~~t~~~~~~~~pp~~~~~~~~~d~gn~~p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~e~~vp~v~~~~~   86 (140)
                      ..|.|..+++  .||+++++|++.|+|||+|+|||+|||+||.+++++++++||||++|+||++..++|.++|++++++.
T Consensus        15 ~~f~t~~~~~--~pP~~~t~~~~~d~gn~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~   92 (766)
T 3eh2_A           15 EPFVTGVRGQ--VPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGES   92 (766)
T ss_dssp             SEEETTSTTC--CCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGG
T ss_pred             CCcccCCCCC--CCCCCCCceEeeccCCCCCceEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCC
Confidence            4899997654  59999999999999999999999999999999999999999999999999998777778999998888


Q ss_pred             CeeecCCCCcEEcCceeEEeCCcEEEEccCCCCCCCCCCC
Q 032449           87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMRGLS  126 (140)
Q Consensus        87 ~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~lp~~~  126 (140)
                      +|+||++|||||||||+|+++|++|+||||+..|.+|..+
T Consensus        93 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y  132 (766)
T 3eh2_A           93 GPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQY  132 (766)
T ss_dssp             CCCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCTTT
T ss_pred             CCCccCCCCCEeCCceEEecCCCEEEeccccccCCCCHHH
Confidence            9999999999999999999999999999999999999765

>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B

Probab=100.00  E-value=8.9e-37  Score=276.76  Aligned_cols=119  Identities=35%  Similarity=0.739  Sum_probs=110.6

Q ss_pred             ceEEeccCCCCCCCCCCCCceeEecccCCCCCCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCCCCCCceeccCC
Q 032449            6 VILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGE   85 (140)
Q Consensus         6 ~~~~~t~~~~~~~~pp~~~~~~~~~d~gn~~p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~e~~vp~v~~~~   85 (140)
                      ...|.|..+++  .||++++.|++.|+|||+|+|||+|||+||.+++++++++||||++|+||++..++|.++|++++++
T Consensus        18 ~~~~~t~~~~~--~pp~~~~~~~~~d~gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~   95 (770)
T 3efo_B           18 GQVYATNTRGQ--IPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGE   95 (770)
T ss_dssp             TSEEETTSSSC--CCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTT
T ss_pred             CCCccCCCCCC--CCCCCCCceeeeecCCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcCCCCCcccCCCCcccCCC
Confidence            35789986654  5999999999999999999999999999999999999999999999999999877777799999988


Q ss_pred             CCeeecCCCCcEEcCceeEEeCCcEEEEccCCCCCCCCCCC
Q 032449           86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMRGLS  126 (140)
Q Consensus        86 ~~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~lp~~~  126 (140)
                      .+|+||++|||||||||+|+++|++|+||||+..|.+|..+
T Consensus        96 ~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y  136 (770)
T 3efo_B           96 SGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFY  136 (770)
T ss_dssp             TCSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCGGG
T ss_pred             CCCCccCCCCCCcCCceEEecCCCEEEeccccccCCCchHh
Confidence            99999999999999999999999999999999999999654

>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A

Probab=99.97  E-value=2.1e-31  Score=242.57  Aligned_cols=102  Identities=32%  Similarity=0.601  Sum_probs=94.0

Q ss_pred             CceeEecccCCCCCCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCCCCCCceeccCCCCeeecCCCCcEEcCcee
Q 032449           24 TSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFME  103 (140)
Q Consensus        24 ~~~~~~~d~gn~~p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~e~~vp~v~~~~~~~~RC~~C~aYiNPf~~  103 (140)
                      .+.|+..|+|||+|+|||+|||+||.+++++++++||||++|+||++..++++++|+++.  ..|+||++|||||||||+
T Consensus        50 ~~~~~~~d~~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~~--~~pvRC~~CrayiNPf~~  127 (810)
T 1pcx_A           50 ERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNED--GLIVRCRRCRSYMNPFVT  127 (810)
T ss_dssp             GGSSSCSGGGSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECS--CCCCBCTTTCCBCCTTCE
T ss_pred             CCccccccCCCCCCCceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccCC--CCCCccCCccCEecCceE
Confidence            489999999999999999999999999999999999999999999987666667999873  349999999999999999


Q ss_pred             EEeCCcEEEEccCCCCCCCCCCCc
Q 032449          104 FVDNGKSFVCNFCGVWMLMRGLSS  127 (140)
Q Consensus       104 ~~~~g~~w~C~lC~~~N~lp~~~~  127 (140)
                      |+++|++|+||||++.|.+|..+.
T Consensus       128 ~~~~g~~W~C~~C~~~N~~P~~y~  151 (810)
T 1pcx_A          128 FIEQGRRWRCNFCRLANDVPMQMD  151 (810)
T ss_dssp             EETTTTEEECTTTCCEEECCGGGG
T ss_pred             EeCCCCEEEccCCCCcCCCchhhc
Confidence            999999999999999999997543

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1

Probab=99.97  E-value=4.4e-31  Score=243.35  Aligned_cols=101  Identities=33%  Similarity=0.605  Sum_probs=93.5

Q ss_pred             CceeEecccCCCCCCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCCCCCCceeccCCCCeeecCCCCcEEcCcee
Q 032449           24 TSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFME  103 (140)
Q Consensus        24 ~~~~~~~d~gn~~p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~e~~vp~v~~~~~~~~RC~~C~aYiNPf~~  103 (140)
                      ++.|+..|+|||+++|||+||++||.+++++++++||||++|+||++..++++++|+++.  ..|+||++|||||||||+
T Consensus       166 ~~~~~~~d~gn~~p~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~~--~~pvRC~rCrAYiNPf~~  243 (926)
T 1m2v_B          166 ERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNED--GLIVRCRRCRSYMNPFVT  243 (926)
T ss_dssp             GGSSSCSSSSSCCTTTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECS--CCCCBCSSSCCBCCTTCE
T ss_pred             CcccccccCCCCCCCceecccccCCCCHHHHHhCCCCeEEEEecCCCcccCCCCCCccCC--CCCCccCCccCEecCceE
Confidence            488999999999999999999999999999999999999999999987666667999873  349999999999999999


Q ss_pred             EEeCCcEEEEccCCCCCCCCCCC
Q 032449          104 FVDNGKSFVCNFCGVWMLMRGLS  126 (140)
Q Consensus       104 ~~~~g~~w~C~lC~~~N~lp~~~  126 (140)
                      |+++|++|+||||++.|.+|..+
T Consensus       244 ~~~~g~~W~CnfC~~~N~~P~~Y  266 (926)
T 1m2v_B          244 FIEQGRRWRCNFCRLANDVPMQM  266 (926)
T ss_dssp             EETTTTEEECTTTCCEEECCGGG
T ss_pred             EeCCCCEEEccCCCCCCCCchhh
Confidence            99999999999999999999754

>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B

Probab=99.95  E-value=6.5e-29  Score=224.88  Aligned_cols=89  Identities=34%  Similarity=0.664  Sum_probs=81.4

Q ss_pred             ccCCCCCCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCCCCCCceeccCCCCeeecCCCCcEEcCceeEEeCCcE
Q 032449           31 DTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKS  110 (140)
Q Consensus        31 d~gn~~p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~e~~vp~v~~~~~~~~RC~~C~aYiNPf~~~~~~g~~  110 (140)
                      ++|||+|+|||+|||+||.+++++++++||||++|+||++..    ++|+++.  .+|+||++|||||||||+|.+ +++
T Consensus        34 ~~~n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~----~~P~v~~--~~p~RC~rCrayiNPf~~f~~-~~~  106 (751)
T 3eh1_A           34 KKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLT----QLPVITS--NTIVRCRSCRTYINPFVSFID-QRR  106 (751)
T ss_dssp             HHHSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCCS----CCCEECC--SCCCBCTTTCCBCCTTCEESS-SSE
T ss_pred             cccCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEecCCcCC----CCCccCC--CCCCcccCccCEeCCceEEec-CCE
Confidence            489999999999999999999999999999999999999763    4898874  569999999999999999954 699


Q ss_pred             EEEccCCCCCCCCCCC
Q 032449          111 FVCNFCGVWMLMRGLS  126 (140)
Q Consensus       111 w~C~lC~~~N~lp~~~  126 (140)
                      |+||||+..|.+|..+
T Consensus       107 w~Cn~C~~~N~~P~~y  122 (751)
T 3eh1_A          107 WKCNLCYRVNDVPEEF  122 (751)
T ss_dssp             EECTTTCCEEECCGGG
T ss_pred             EEcccccCCCCCCHHH
Confidence            9999999999999765

>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A

Probab=99.94  E-value=2.1e-28  Score=221.79  Aligned_cols=96  Identities=22%  Similarity=0.276  Sum_probs=87.1

Q ss_pred             ceeEecccCCCCCCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCCCCCCceeccCCCCeeecCC--CCcEEcCce
Q 032449           25 SKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC--CRGYRNPFM  102 (140)
Q Consensus        25 ~~~~~~d~gn~~p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~e~~vp~v~~~~~~~~RC~~--C~aYiNPf~  102 (140)
                      .+|...|++|++|+|||+|||+||.+++++++++||||++|+||++.    +++|+++   .+|+||++  |||||||||
T Consensus         6 ~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~----~~~p~v~---~~pvRC~~~~CrayiNPf~   78 (769)
T 2nut_A            6 TTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKER----PDLPPIQ---YEPVLCSRTTCRAVLNPLC   78 (769)
T ss_dssp             -CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCC----SCCCCBC---SCCCBCSSTTCCCBCCTTS
T ss_pred             cchhhhhcccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCC----CCCCcCC---CCCCcCCCCCCCeEECCce
Confidence            55777788999999999999999999999999999999999999965    2488887   47999999  999999999


Q ss_pred             eEEeCCcEEEEccCCCCCCCCCCCc
Q 032449          103 EFVDNGKSFVCNFCGVWMLMRGLSS  127 (140)
Q Consensus       103 ~~~~~g~~w~C~lC~~~N~lp~~~~  127 (140)
                      +|+++|++|+||||++.|.+|..+.
T Consensus        79 ~~~~~~~~W~C~~C~~~N~~P~~Y~  103 (769)
T 2nut_A           79 QVDYRAKLWACNFCYQRNQFPPSYA  103 (769)
T ss_dssp             EEETTTTEEECSSSCCEEECCGGGT
T ss_pred             EEeCCCCEEEccCCCCCCCCChHHc
Confidence            9999999999999999999997554

>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*

Probab=99.92  E-value=1.7e-26  Score=209.22  Aligned_cols=87  Identities=20%  Similarity=0.290  Sum_probs=80.4

Q ss_pred             CCCCCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCCCCCCceeccCCCCeeecCC--CCcEEcCceeEEeCCcEE
Q 032449           34 NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC--CRGYRNPFMEFVDNGKSF  111 (140)
Q Consensus        34 n~~p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~e~~vp~v~~~~~~~~RC~~--C~aYiNPf~~~~~~g~~w  111 (140)
                      +++++|||+|||+||.+++++++++||||++|+||++.    +++|+++   .+|+||++  |||||||||+|+++|++|
T Consensus         6 ~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~----~~~p~v~---~~pvRC~~~~CrayiNPf~~~~~~~~~W   78 (768)
T 1m2o_A            6 NEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEY----DELNVAP---YNPVVCSGPHCKSILNPYCVIDPRNSSW   78 (768)
T ss_dssp             HHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCC----TTCCEEC---SCCCBCCSTTTCCBCCTTSCEETTTTEE
T ss_pred             ccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCC----CCCCcCC---CCCCccCCCCCCeEECCceEEeCCCCEE
Confidence            78999999999999999999999999999999999964    2589987   47999999  999999999999999999


Q ss_pred             EEccCCCCCCCCCCCc
Q 032449          112 VCNFCGVWMLMRGLSS  127 (140)
Q Consensus       112 ~C~lC~~~N~lp~~~~  127 (140)
                      +||||++.|.+|..+.
T Consensus        79 ~C~~C~~~N~~P~~y~   94 (768)
T 1m2o_A           79 SCPICNSRNHLPPQYT   94 (768)
T ss_dssp             CCTTTCCCCBCCGGGC
T ss_pred             EcccCCCCCCCChHHc
Confidence            9999999999997544

>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A

Probab=99.74  E-value=3.4e-19  Score=115.21  Aligned_cols=52  Identities=25%  Similarity=0.345  Sum_probs=47.8

Q ss_pred             CCCeeecCC--CCcEEcCceeEEeCCcEEEEccCCCCCCCCCCCcccccccccc
Q 032449           85 ESGLVRCCC--CRGYRNPFMEFVDNGKSFVCNFCGVWMLMRGLSSVEGQLNLLL  136 (140)
Q Consensus        85 ~~~~~RC~~--C~aYiNPf~~~~~~g~~w~C~lC~~~N~lp~~~~~~~~~~~~~  136 (140)
                      +.+|+||++  |+||||||++|++++++|+|+||++.|.+|..+...++.+||.
T Consensus         6 ~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~~is~~nlP~   59 (59)
T 2yrc_A            6 SGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPA   59 (59)
T ss_dssp             CCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCSSCHHHHSCC
T ss_pred             CCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHHhccCcccCCc
Confidence            367999999  9999999999999999999999999999999888888888763

>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1

Probab=86.38  E-value=0.38  Score=31.36  Aligned_cols=31  Identities=23%  Similarity=0.455  Sum_probs=23.1

Q ss_pred             CeeecCCCCcEEcCceeEEeCCcEEEEccCCCCCCCC
Q 032449           87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMR  123 (140)
Q Consensus        87 ~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~lp  123 (140)
                      -++||. |+++    .-.+.+.++-.|+ ||...++.
T Consensus         3 ~vv~C~-C~~~----~~~~~~~kT~~C~-CG~~~~~~   33 (71)
T 1gh9_A            3 IIFRCD-CGRA----LYSREGAKTRKCV-CGRTVNVK   33 (71)
T ss_dssp             EEEEET-TSCC----EEEETTCSEEEET-TTEEEECC
T ss_pred             EEEECC-CCCE----EEEcCCCcEEECC-CCCeeeec
Confidence            479999 9998    3345566667898 99877665

>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C

Probab=85.16  E-value=0.2  Score=31.86  Aligned_cols=28  Identities=29%  Similarity=0.545  Sum_probs=20.1

Q ss_pred             CeeecCCCCcEEcCceeEEeCCcEEEEccCCC
Q 032449           87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGV  118 (140)
Q Consensus        87 ~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~  118 (140)
                      ..--|.||++++.-    -.+.-.|.|++|.+
T Consensus        32 k~r~CaRCGg~v~l----r~~k~~WvC~lC~k   59 (62)
T 2a20_A           32 QTKFCARCGGRVSL----RSNKVMWVCNLCRK   59 (62)
T ss_dssp             CCEECTTSEEEEES----STTCEEEEEHHHHH
T ss_pred             CCeeecccCCEeee----cCCeEEEEehhhhh
Confidence            34567888888774    23456899999964

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1

Probab=80.81  E-value=3.5  Score=24.14  Aligned_cols=29  Identities=21%  Similarity=0.456  Sum_probs=23.0

Q ss_pred             eeecCCCCcEEcCceeEEeCCcEEEEccCCCC
Q 032449           88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVW  119 (140)
Q Consensus        88 ~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~  119 (140)
                      +..|..|++   .-..++.....++|..||..
T Consensus         5 ~~~CP~C~~---~~l~~d~~~gelvC~~CG~v   33 (50)
T 1pft_A            5 QKVCPACES---AELIYDPERGEIVCAKCGYV   33 (50)
T ss_dssp             CCSCTTTSC---CCEEEETTTTEEEESSSCCB
T ss_pred             cEeCcCCCC---cceEEcCCCCeEECcccCCc
Confidence            568999988   23457777789999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	140
d1pd0a2	177	b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast	1e-14
d1pd0a5	85	g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha	2e-12
d2qtva5	75	g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Sacchar	1e-06

>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: beta-sandwich domain of Sec23/24
family: beta-sandwich domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.8 bits (158), Expect = 1e-14
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 19 PPPPVT----SKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPS 74
          PPPP+        +  +  N SP YIR +LN +P   +LLK S +P  L+++        
Sbjct: 25 PPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDC 84

Query: 75 EDPIPVV 81
           + +   
Sbjct: 85 METVMRA 91

>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-finger domain of Sec23/24
family: Zn-finger domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (137), Expect = 2e-12
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%)

Query: 75  EDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGV 118
            DP P+ + G   +VRC  CR Y NPF+ F++ G+ + CNFC +
Sbjct: 2   IDPPPLNEDG--LIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRL 43

>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-finger domain of Sec23/24
family: Zn-finger domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (97), Expect = 1e-06
 Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 2/31 (6%)

Query: 89  VRCCC--CRGYRNPFMEFVDNGKSFVCNFCG 117
           V C    C+   NP+        S+ C  C 
Sbjct: 10  VVCSGPHCKSILNPYCVIDPRNSSWSCPICN 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	140
d1pd0a5	85	Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T	99.76
d2qtva5	75	Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T	99.69
d1pd0a2	177	Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T	99.52
d2qtva2	176	Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T	98.21
d2j9ub1	47	Vacuolar protein-sorting-associated protein 36, VP	83.74

>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-finger domain of Sec23/24
family: Zn-finger domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=1.1e-19  Score=123.31  Aligned_cols=49  Identities=37%  Similarity=0.781  Sum_probs=44.4

Q ss_pred             CCCceeccCCCCeeecCCCCcEEcCceeEEeCCcEEEEccCCCCCCCCCCC
Q 032449           76 DPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGVWMLMRGLS  126 (140)
Q Consensus        76 ~~vp~v~~~~~~~~RC~~C~aYiNPf~~~~~~g~~w~C~lC~~~N~lp~~~  126 (140)
                      ++||+++.  ..|+||++|+|||||||+|+.+|++|+|+||++.|.+|..+
T Consensus         3 ~pvPv~~~--~~i~RC~~C~ayiNP~~~~~~~g~~w~C~~C~~~N~~p~~y   51 (85)
T d1pd0a5           3 DPPPLNED--GLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQM   51 (85)
T ss_dssp             SCCCBCCS--CCCCBCSSSCCBCCTTCEEETTTTEEECTTTCCEEECCGGG
T ss_pred             CCCcccCC--CCCccccCCcCEECCceEEeCCCCEEECCCCCcccCCCHHH
Confidence            46899874  47999999999999999999999999999999999999644

>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-finger domain of Sec23/24
family: Zn-finger domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=3.3e-18  Score=113.75  Aligned_cols=52  Identities=19%  Similarity=0.326  Sum_probs=44.9

Q ss_pred             CceeccCCCCeeecCC--CCcEEcCceeEEeCCcEEEEccCCCCCCCCCCCcccccc
Q 032449           78 IPVVDFGESGLVRCCC--CRGYRNPFMEFVDNGKSFVCNFCGVWMLMRGLSSVEGQL  132 (140)
Q Consensus        78 vp~v~~~~~~~~RC~~--C~aYiNPf~~~~~~g~~w~C~lC~~~N~lp~~~~~~~~~  132 (140)
                      ++++.   .+|+||++  |+||||||++|+.+|++|+|+||++.|.+|..+...++.
T Consensus         2 ~~~~~---~~PvrC~r~~C~ayiNP~~~~~~~~~~W~C~~C~~~N~lP~~Y~~~~~~   55 (75)
T d2qtva5           2 LNVAP---YNPVVCSGPHCKSILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQE   55 (75)
T ss_dssp             CCEES---SCCCBCCSTTTCCBCCTTCCEETTTTEEECTTTCCEEECCTTTSSCCTT
T ss_pred             CCccC---CCCceeCCCCCCcEECCceEEecCCCEEEecccCccCcCChhhccCCcc
Confidence            56665   78999986  999999999999999999999999999999876655443

>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: beta-sandwich domain of Sec23/24
family: beta-sandwich domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=2.4e-15  Score=114.05  Aligned_cols=48  Identities=31%  Similarity=0.503  Sum_probs=44.8

Q ss_pred             eEecccCCCCCCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCC
Q 032449           27 YIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPS   74 (140)
Q Consensus        27 ~~~~d~gn~~p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~   74 (140)
                      ++..|+|||+|+|||+|+|+||.+.+++++++||||++|+||+.+..+
T Consensus        37 ~~~~d~~n~~p~~~r~T~~~iP~~~~ll~~~~lP~~~~i~Pf~~l~~a   84 (177)
T d1pd0a2          37 LVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDC   84 (177)
T ss_dssp             SSCSGGGSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECSCCSSSTE
T ss_pred             ecccccCCCCccceeeeeccCCCCHHHHHHcCCCcEEEeccccchhhh
Confidence            566799999999999999999999999999999999999999987654

>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: beta-sandwich domain of Sec23/24
family: beta-sandwich domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=3.5e-07  Score=68.36  Aligned_cols=39  Identities=21%  Similarity=0.192  Sum_probs=35.7

Q ss_pred             CCeeEeeccccCCCHHHHhhcCCCeEEEEeeccCCCCCC
Q 032449           37 PRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSE   75 (140)
Q Consensus        37 p~~vR~T~~~iP~t~~l~~~~~iPlgivv~Pf~~~~~~e   75 (140)
                      .+.||+|||+||.++..+.++.||+|++++|+++..+.+
T Consensus         8 ~dgvR~swn~~p~s~~e~~~~vvP~~~~ytplker~d~~   46 (176)
T d2qtva2           8 INGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDDEE   46 (176)
T ss_dssp             HHSEEESBSEEESSHHHHHHTCSCEEEEECTTCCCTCTT
T ss_pred             ccCcEEEeeccCCChHHhhceeeeeeEEeccCccccCCC
Confidence            468999999999999999999999999999999876654

>d2j9ub1 g.41.11.1 (B:115-161) Vacuolar protein-sorting-associated protein 36, VPS36 {Saccharomyces cerevisiae [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Ran binding protein zinc finger-like
family: Ran binding protein zinc finger-like
domain: Vacuolar protein-sorting-associated protein 36, VPS36
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=83.74  E-value=0.13  Score=29.59  Aligned_cols=20  Identities=25%  Similarity=0.418  Sum_probs=15.0

Q ss_pred             cEEEEccCCCCCCCCCCCcc
Q 032449          109 KSFVCNFCGVWMLMRGLSSV  128 (140)
Q Consensus       109 ~~w~C~lC~~~N~lp~~~~~  128 (140)
                      .+|.|++|...|..-+--..
T Consensus         2 s~W~CPICm~~Ne~~~e~~~   21 (47)
T d2j9ub1           2 STWVCPICMVSNETQGEFTK   21 (47)
T ss_dssp             EEEECTTTCCEEEESSCCCT
T ss_pred             cceecceeeeeccceeeecc
Confidence            47999999999976554333