Citrus Sinensis ID: 032459

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC
Secondary Structure (PSIPRED)
cccccEEEcccccccccccHHHHHccccccEEEccccEEcccccHHcccccccccEEcccccccccccccHHccccccEEcccccccEEcccHHHHccccccccccccccccccccHHHHccccccEEEcccccccEEcc
Secondary Structure Prediction (SSPRO)
ccccEEEEEccccccccccHHHHHHcccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccc
Coil and Loop (DISEMBL)
mssllsirftnntlfgelppnfcnhLSNLESLFlknnmfhgkipstlsnckrLRNIslslddfsgtipkeiGNVTKLIRLYLRGnqlqgeipeeLGNLAELEMLWLQNNfltraipssifnlsslsnldlsvnnltgslc
Flexible Loop (DISEMBL)
MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISlslddfsgtipkEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFnlsslsnldlsvnnltgslc
Low Complexity Region (SEG)
MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPssifnlsslsnldlsvnnlTGSLC
Disordered region (IsUnstruct)
****LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDL**********
Disordered Region (DISOPRED)
MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC
Disordered Region (DISEMBL)
MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC
Disordered Region (DISPRO)
*SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	140	2.2.26 [Sep-21-2011]
Q9ZPS9	1143	Serine/threonine-protein	yes	no	0.971	0.118	0.423	3e-22
O22476	1196	Protein BRASSINOSTEROID I	no	no	0.985	0.115	0.453	9e-22
Q8GUQ5	1207	Brassinosteroid LRR recep	N/A	no	0.971	0.112	0.423	3e-20
Q8L899	1207	Systemin receptor SR160 O	N/A	no	0.992	0.115	0.414	4e-20
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.964	0.108	0.419	2e-19
Q9FL28	1173	LRR receptor-like serine/	no	no	0.921	0.109	0.430	3e-19
Q9C9H7	847	Receptor-like protein 12	no	no	0.921	0.152	0.438	3e-19
Q9LHP4	1141	Receptor-like protein kin	no	no	0.978	0.120	0.413	6e-19
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.907	0.121	0.414	2e-18
O49318	1124	Probable leucine-rich rep	no	no	0.914	0.113	0.410	2e-18

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 58/137 (42%), Positives = 80/137 (58%)

Query: 3   SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62
           SL    F++N   G +PP+ C   ++LE L L +N+  G+IP  +S C  LR I LSL+ 
Sbjct: 351 SLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELRTIDLSLNY 410

Query: 63  FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNL 122
            +GTIP EIGN+ KL +     N + GEIP E+G L  L+ L L NN LT  IP   FN 
Sbjct: 411 LNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEFFNC 470

Query: 123 SSLSNLDLSVNNLTGSL 139
           S++  +  + N LTG +
Sbjct: 471 SNIEWVSFTSNRLTGEV 487

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1

 Score =  102 bits (253), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 63/139 (45%), Positives = 89/139 (64%), Gaps = 1/139 (0%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSN-LESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SLL++  ++N   G + PN C +  N L+ L+L+NN F GKIP TLSNC  L ++ LS 
Sbjct: 390 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 449

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  SGTIP  +G+++KL  L L  N L+GEIP+EL  +  LE L L  N LT  IPS + 
Sbjct: 450 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 509

Query: 121 NLSSLSNLDLSVNNLTGSL 139
           N ++L+ + LS N LTG +
Sbjct: 510 NCTNLNWISLSNNRLTGEI 528

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/137 (42%), Positives = 89/137 (64%), Gaps = 1/137 (0%)

Query: 4   LLSIRFTNNTLFGELPPNFC-NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62
           L ++  ++N L G +P   C + ++NL+ L+L+NN+F G IP +LSNC +L ++ LS + 
Sbjct: 403 LETLDMSSNNLTGVIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNY 462

Query: 63  FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNL 122
            +G+IP  +G+++KL  L L  NQL GEIP+EL  L  LE L L  N LT  IP+S+ N 
Sbjct: 463 LTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNC 522

Query: 123 SSLSNLDLSVNNLTGSL 139
           + L+ + LS N L+G +
Sbjct: 523 TKLNWISLSNNQLSGEI 539

Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/140 (41%), Positives = 90/140 (64%), Gaps = 1/140 (0%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFC-NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS 59
           +  L ++  ++N L G +P   C + ++NL+ L+L+NN+F G IP +LSNC +L ++ LS
Sbjct: 400 LPKLETLDMSSNNLTGIIPSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLS 459

Query: 60  LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
            +  +G+IP  +G+++KL  L L  NQL GEIP+EL  L  LE L L  N LT  IP+S+
Sbjct: 460 FNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASL 519

Query: 120 FNLSSLSNLDLSVNNLTGSL 139
            N + L+ + LS N L+G +
Sbjct: 520 SNCTKLNWISLSNNQLSGEI 539

Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development.

Solanum peruvianum (taxid: 4082)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/136 (41%), Positives = 82/136 (60%), Gaps = 1/136 (0%)

Query: 4   LLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDF 63
           L  +   NNTL G L P+  N L+NL+ L L +N   GK+P  +S  ++L  + L  + F
Sbjct: 386 LTDLYLHNNTLEGTLSPSISN-LTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRF 444

Query: 64  SGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLS 123
           SG IP+EIGN T L  + + GN  +GEIP  +G L EL +L L+ N L   +P+S+ N  
Sbjct: 445 SGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCH 504

Query: 124 SLSNLDLSVNNLTGSL 139
            L+ LDL+ N L+GS+
Sbjct: 505 QLNILDLADNQLSGSI 520

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/130 (43%), Positives = 78/130 (60%), Gaps = 1/130 (0%)

Query: 10  TNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPK 69
             N L G +P +    L+NL  L L  N   GKIP    N   L+++ L+ +   G IP 
Sbjct: 200 AGNHLTGSIPVSIGT-LANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPA 258

Query: 70  EIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLD 129
           EIGN + L++L L  NQL G+IP ELGNL +L+ L +  N LT +IPSS+F L+ L++L 
Sbjct: 259 EIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLG 318

Query: 130 LSVNNLTGSL 139
           LS N+L G +
Sbjct: 319 LSENHLVGPI 328

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/130 (43%), Positives = 81/130 (62%), Gaps = 1/130 (0%)

Query: 10  TNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPK 69
            NN L GE+P +  N LS L +L L +N   GKIP ++ + K+LRN+SL+ ++  G IP 
Sbjct: 166 ANNVLTGEIPSSLGN-LSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPS 224

Query: 70  EIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLD 129
            +GN++ L+ L L  NQL GE+P  +GNL EL ++  +NN L+  IP S  NL+ LS   
Sbjct: 225 SLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFV 284

Query: 130 LSVNNLTGSL 139
           LS NN T + 
Sbjct: 285 LSSNNFTSTF 294

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/138 (41%), Positives = 82/138 (59%), Gaps = 1/138 (0%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
           S+L  +     ++ G LP +    L  LE+L +   M  G+IPS L NC  L ++ L  +
Sbjct: 226 SNLTVLGLAETSVSGNLPSSL-GKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYEN 284

Query: 62  DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN 121
             SG+IP+EIG +TKL +L+L  N L G IPEE+GN + L+M+ L  N L+ +IPSSI  
Sbjct: 285 SLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGR 344

Query: 122 LSSLSNLDLSVNNLTGSL 139
           LS L    +S N  +GS+
Sbjct: 345 LSFLEEFMISDNKFSGSI 362

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 75/128 (58%), Gaps = 1/128 (0%)

Query: 12  NTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI 71
           N L GE+PP   N ++ L++L L  N   G IPSTL N K L  + L L+  +G+IP E+
Sbjct: 272 NQLSGEIPPEIGN-MTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPEL 330

Query: 72  GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLS 131
           G +  +I L +  N+L G +P+  G L  LE L+L++N L+  IP  I N + L+ L L 
Sbjct: 331 GEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLD 390

Query: 132 VNNLTGSL 139
            NN TG L
Sbjct: 391 TNNFTGFL 398

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 80/129 (62%), Gaps = 1/129 (0%)

Query: 11  NNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKE 70
            N   G +P +  N L++LE+L L  N   G IPS + N K L+ + L  +  +GTIPKE
Sbjct: 262 QNKFSGFIPKDIGN-LTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKE 320

Query: 71  IGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDL 130
           +G ++K++ +    N L GEIP EL  ++EL +L+L  N LT  IP+ +  L +L+ LDL
Sbjct: 321 LGKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDL 380

Query: 131 SVNNLTGSL 139
           S+N+LTG +
Sbjct: 381 SINSLTGPI 389

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
147776333	1205	hypothetical protein VITISV_000078 [Viti	0.985	0.114	0.510	5e-28
255578886	1043	serine-threonine protein kinase, plant-t	0.985	0.132	0.467	4e-27
359485453	1202	PREDICTED: probable LRR receptor-like se	0.985	0.114	0.474	2e-26
147769371	1241	hypothetical protein VITISV_010511 [Viti	0.985	0.111	0.489	4e-26
359483677	1229	PREDICTED: LRR receptor-like serine/thre	0.985	0.112	0.489	6e-26
359497186	1140	PREDICTED: LRR receptor-like serine/thre	0.985	0.121	0.489	1e-25
296085726	932	unnamed protein product [Vitis vinifera]	0.921	0.138	0.489	1e-25
147852480	1229	hypothetical protein VITISV_039533 [Viti	0.985	0.112	0.474	2e-24
147815853	562	hypothetical protein VITISV_030571 [Viti	0.992	0.247	0.464	4e-24
449500845	982	PREDICTED: probable LRR receptor-like se	0.978	0.139	0.417	6e-24

>gi|147776333|emb|CAN72034.1| hypothetical protein VITISV_000078 [Vitis vinifera]

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 91/139 (65%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SSL  I FTNN+L G LP   C HL NL+ L+L  N   G++P+TLS C  L  +SLS 
Sbjct: 339 ISSLQVIDFTNNSLSGSLPMGICKHLPNLQGLYLAQNHLSGQLPTTLSLCGELLFLSLSF 398

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           + F G+IP+EIGN++KL  + LR N L G IP   GNL  L+ L L  NFLT  +P +IF
Sbjct: 399 NKFRGSIPREIGNLSKLEHIDLRSNSLVGSIPTSFGNLKALKFLNLGINFLTGTVPEAIF 458

Query: 121 NLSSLSNLDLSVNNLTGSL 139
           N+S L NL L  N+L+GSL
Sbjct: 459 NISELQNLALVQNHLSGSL 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578886|ref|XP_002530297.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223530195|gb|EEF32104.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/139 (46%), Positives = 95/139 (68%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SSL  + F  N L G LPPN   HL+NL +L+L +N+F+G IPSTL  C++L+ ++LS 
Sbjct: 173 ISSLWLLDFGTNNLTGRLPPNIFTHLANLRALYLNSNLFNGPIPSTLMACQQLKLLALSF 232

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           + F G+I K+IGN+T L  LYL GN   G IP+E+G+LA LE + L  N L+  +PS I+
Sbjct: 233 NHFEGSIHKDIGNLTMLQELYLGGNNFSGTIPDEIGDLAHLEEIILNVNGLSGLVPSGIY 292

Query: 121 NLSSLSNLDLSVNNLTGSL 139
           N S ++ + L++N L+G L
Sbjct: 293 NASKMTAIGLALNQLSGYL 311

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485453|ref|XP_003633276.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/139 (47%), Positives = 94/139 (67%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SSL  I F NN+L G LP + C HL NL+ L L  N   G++P+TLS C  L  ++L+ 
Sbjct: 333 ISSLQEIGFANNSLSGSLPMDICKHLPNLQWLLLSLNQLSGQLPTTLSLCGELLTLTLAY 392

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           ++F+G+IP+EIGN++KL ++Y R +   G IP+ELGNL  L+ L L  N LT  +P +IF
Sbjct: 393 NNFTGSIPREIGNLSKLEQIYFRRSSFTGNIPKELGNLVNLQFLSLNVNNLTGIVPEAIF 452

Query: 121 NLSSLSNLDLSVNNLTGSL 139
           N+S L  L L+ N+L+GSL
Sbjct: 453 NISKLQVLSLAGNHLSGSL 471

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769371|emb|CAN72496.1| hypothetical protein VITISV_010511 [Vitis vinifera]

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 92/139 (66%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SSL  I F+NN+L G LP + C HL NL+ L+L  N   G++P+TLS C  L  +SL++
Sbjct: 375 ISSLQIIDFSNNSLSGSLPMDICKHLPNLQGLYLLQNHLSGQLPTTLSLCGELLYLSLAV 434

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           + F G+IP+EIGN++KL  + LR N L G IP   GNL  L+ L L  NFLT  +P +IF
Sbjct: 435 NKFRGSIPREIGNLSKLEDISLRSNSLVGSIPTSFGNLMALKYLDLGMNFLTGTVPEAIF 494

Query: 121 NLSSLSNLDLSVNNLTGSL 139
           N+S L  L L  N+L+GSL
Sbjct: 495 NISELQILVLVQNHLSGSL 513

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483677|ref|XP_003633000.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 91/139 (65%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SSL  I FT+N+L G LP + C HL NL+ L L  N   G++P+TLS C  L  +SLS 
Sbjct: 363 VSSLQVIAFTDNSLSGSLPKDICKHLPNLQGLSLSQNHLSGQLPTTLSLCGELLFLSLSF 422

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           + F G+IPKEIGN++KL ++YL  N L G IP   GNL  L+ L L  N LT  +P +IF
Sbjct: 423 NKFRGSIPKEIGNLSKLEKIYLGTNSLIGSIPTSFGNLKALKFLNLGINNLTGTVPEAIF 482

Query: 121 NLSSLSNLDLSVNNLTGSL 139
           N+S L +L +  N+L+GSL
Sbjct: 483 NISKLQSLAMVKNHLSGSL 501

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497186|ref|XP_003635448.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 90/139 (64%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SSL  I FT+N+L G LP + C HL NL+ L L  N   G++P+TLS C  L  +SLS 
Sbjct: 274 VSSLQVIAFTDNSLSGSLPKDICKHLPNLQGLSLSQNHLSGQLPTTLSLCGELLFLSLSF 333

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           + F G+IPKEIGN++KL  +YL  N L G IP   GNL  L+ L L  N LT  +P +IF
Sbjct: 334 NKFRGSIPKEIGNLSKLEEIYLGTNSLIGSIPTSFGNLKALKFLNLGINNLTGTVPEAIF 393

Query: 121 NLSSLSNLDLSVNNLTGSL 139
           N+S L +L +  N+L+GSL
Sbjct: 394 NISKLQSLAMVKNHLSGSL 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085726|emb|CBI29526.3| unnamed protein product [Vitis vinifera]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/139 (48%), Positives = 90/139 (64%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SSL  I FT+N+L G LP + C HL NL+ L L  N   G++P+TLS C  L  +SLS 
Sbjct: 134 VSSLQVIAFTDNSLSGSLPKDICKHLPNLQGLSLSQNHLSGQLPTTLSLCGELLFLSLSF 193

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           + F G+IPKEIGN++KL  +YL  N L G IP   GNL  L+ L L  N LT  +P +IF
Sbjct: 194 NKFRGSIPKEIGNLSKLEEIYLGTNSLIGSIPTSFGNLKALKFLNLGINNLTGTVPEAIF 253

Query: 121 NLSSLSNLDLSVNNLTGSL 139
           N+S L +L +  N+L+GSL
Sbjct: 254 NISKLQSLAMVKNHLSGSL 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852480|emb|CAN78527.1| hypothetical protein VITISV_039533 [Vitis vinifera]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/139 (47%), Positives = 92/139 (66%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SSL  I F+NN+L G LP + C HL NL+ L L  N   G++P+TLS C+ L  +SLS 
Sbjct: 363 ISSLQGIGFSNNSLSGSLPMDICKHLPNLQWLDLALNHLSGQLPTTLSLCRELLVLSLSF 422

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           + F G+IP+EIGN++KL  + L  N L G IP   GNL  L+ L L  N LT  +P +IF
Sbjct: 423 NKFRGSIPREIGNLSKLEWIDLSSNSLVGSIPTSFGNLMALKFLNLGINNLTGTVPEAIF 482

Query: 121 NLSSLSNLDLSVNNLTGSL 139
           N+S L +L +++N+L+GSL
Sbjct: 483 NISKLQSLAMAINHLSGSL 501

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147815853|emb|CAN65889.1| hypothetical protein VITISV_030571 [Vitis vinifera]

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/140 (46%), Positives = 88/140 (62%), Gaps = 1/140 (0%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNH-LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS 59
           +SSL  I  T N+L G++P + CNH LS L  + L  N F G IPS LS C  L+ +S +
Sbjct: 324 ISSLQEIALTYNSLSGDIPSSMCNHDLSALRGIRLSGNQFIGPIPSNLSKCGELQILSSA 383

Query: 60  LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
            + F+G  P+ IG++TKL  L L  N L G IPEEL  L  LE L+L++N  T  IPS+I
Sbjct: 384 FNKFTGGSPRSIGSLTKLTMLSLAANSLSGTIPEELSFLPSLEYLYLRSNSFTNPIPSAI 443

Query: 120 FNLSSLSNLDLSVNNLTGSL 139
           FN+S+L  +DL  N  +GS+
Sbjct: 444 FNISTLKEIDLGKNGFSGSM 463

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500845|ref|XP_004161209.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 58/139 (41%), Positives = 89/139 (64%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SSL+ +  + N   G LP + C  L +L  L+L  N   G++PSTL  C+ L +++L+ 
Sbjct: 240 LSSLVILGLSGNNFIGGLPDDICEDLPSLGGLYLSYNQLSGQLPSTLWKCENLEDVALAY 299

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           + F+G+IP+ +GN+T++ +++L  N L GEIP ELG L  LE L +Q NF    IP +IF
Sbjct: 300 NQFTGSIPRNVGNLTRVKQIFLGVNYLSGEIPYELGYLQNLEYLAMQENFFNGTIPPTIF 359

Query: 121 NLSSLSNLDLSVNNLTGSL 139
           NLS L+ + L  N L+G+L
Sbjct: 360 NLSKLNTIALVKNQLSGTL 378

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
TAIR|locus:2005498	1196	BRI1 "BRASSINOSTEROID INSENSIT	0.821	0.096	0.465	9.1e-19
TAIR|locus:2041150	1143	BRL2 "BRI1-like 2" [Arabidopsi	0.814	0.099	0.447	4.8e-18
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.821	0.135	0.413	8.2e-18
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.821	0.121	0.413	6.9e-17
TAIR|locus:2047525	980	AT2G24130 [Arabidopsis thalian	0.821	0.117	0.411	4.1e-16
TAIR|locus:2825389	784	RLP11 "AT1G71390" [Arabidopsis	0.728	0.130	0.446	4.8e-16
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.985	0.140	0.352	8.6e-16
TAIR|locus:2020417	1101	AT1G17230 [Arabidopsis thalian	0.807	0.102	0.429	1e-15
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.814	0.099	0.408	1.1e-15
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.742	0.099	0.438	1.2e-15

TAIR|locus:2005498 BRI1 "BRASSINOSTEROID INSENSITIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 9.1e-19, P = 9.1e-19
 Identities = 54/116 (46%), Positives = 74/116 (63%)

Query:     2 SSLLSIRFTNNTLFGELPPNFCNHLSN-LESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
             +SLL++  ++N   G + PN C +  N L+ L+L+NN F GKIP TLSNC  L ++ LS 
Sbjct:   390 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 449

Query:    61 DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
             +  SGTIP  +G+++KL  L L  N L+GEIP+EL  +  LE L L  N LT  IP
Sbjct:   450 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 505

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0016301 "kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0010224 "response to UV-B" evidence=IGI

GO:0005768 "endosome" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0010268 "brassinosteroid homeostasis" evidence=IEP

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0043234 "protein complex" evidence=IPI

GO:0004672 "protein kinase activity" evidence=IDA

GO:0060548 "negative regulation of cell death" evidence=IMP

GO:1900140 "regulation of seedling development" evidence=IMP

GO:0009911 "positive regulation of flower development" evidence=IGI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IEP;IMP

GO:0010584 "pollen exine formation" evidence=IMP

GO:0048657 "tapetal cell differentiation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

GO:0005496 "steroid binding" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0016310 "phosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009729 "detection of brassinosteroid stimulus" evidence=IMP

TAIR|locus:2041150 BRL2 "BRI1-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 4.8e-18, P = 4.8e-18
 Identities = 51/114 (44%), Positives = 68/114 (59%)

Query:     3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62
             SL    F++N   G +PP+ C   ++LE L L +N+  G+IP  +S C  LR I LSL+ 
Sbjct:   351 SLRIADFSSNRFSGVIPPDLCPGAASLEELRLPDNLVTGEIPPAISQCSELRTIDLSLNY 410

Query:    63 FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
              +GTIP EIGN+ KL +     N + GEIP E+G L  L+ L L NN LT  IP
Sbjct:   411 LNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIP 464

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0010233 "phloem transport" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009734 "auxin mediated signaling pathway" evidence=RCA;IMP

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 8.2e-18, P = 8.2e-18
 Identities = 48/116 (41%), Positives = 73/116 (62%)

Query:     1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
             ++ L  +   NN L GE+P +  N LS L +L L +N   GKIP ++ + K+LRN+SL+ 
Sbjct:   157 LNQLRHLILANNVLTGEIPSSLGN-LSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLAS 215

Query:    61 DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
             ++  G IP  +GN++ L+ L L  NQL GE+P  +GNL EL ++  +NN L+  IP
Sbjct:   216 NNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIP 271

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 6.9e-17, P = 6.9e-17
 Identities = 48/116 (41%), Positives = 70/116 (60%)

Query:     1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
             +S L S+  ++N   G++P +  N LS+L SL L +N F G+IPS++ N   L  +SL  
Sbjct:   172 LSRLTSLHLSSNQFSGQIPSSIGN-LSHLTSLELSSNQFSGQIPSSIGNLSNLTFLSLPS 230

Query:    61 DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
             +DF G IP  IGN+ +L  LYL  N   GEIP   GNL +L +L + +N L+  +P
Sbjct:   231 NDFFGQIPSSIGNLARLTYLYLSYNNFVGEIPSSFGNLNQLIVLQVDSNKLSGNVP 286

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 4.1e-16, P = 4.1e-16
 Identities = 49/119 (41%), Positives = 70/119 (58%)

Query:     1 MSSLLSIRFTN---NTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNIS 57
             +S+LL++   N   N L G +P   C  LS LE ++L NN   G+IP  L +  RL  + 
Sbjct:   317 ISNLLNLTLLNLSSNLLSGPIPRELCK-LSKLERVYLSNNHLTGEIPMELGDIPRLGLLD 375

Query:    58 LSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
             +S ++ SG+IP   GN+++L RL L GN L G +P+ LG    LE+L L +N LT  IP
Sbjct:   376 VSRNNLSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIP 434

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 4.8e-16, P = 4.8e-16
 Identities = 46/103 (44%), Positives = 66/103 (64%)

Query:    14 LFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGN 73
             L GE+P +  N LS LE+L L +N   G+IP ++ N K+LRN+SL  +D  G IP  +GN
Sbjct:   114 LHGEIPSSLGN-LSRLENLELSSNRLVGEIPYSIGNLKQLRNLSLGDNDLIGEIPSSLGN 172

Query:    74 VTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
             ++ L+ L L  N L GE+P  +GNL EL ++ L  N L+ +IP
Sbjct:   173 LSLLLDLDLWNNSLVGEVPASIGNLNELRVMSLDRNSLSGSIP 215

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 8.6e-16, P = 8.6e-16
 Identities = 49/139 (35%), Positives = 73/139 (52%)

Query:     1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
             +S L ++R + N+ FGELP +    L +L  L L  N F GKIPS+L N   L +I L  
Sbjct:   207 LSYLTTLRLSRNSFFGELPSSL-GSLFHLTDLILDTNHFVGKIPSSLGNLSHLTSIDLHK 265

Query:    61 DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPXXXX 120
             ++F G IP  +GN++ L    L  N + GEIP   GNL +L++L +++N L+ + P    
Sbjct:   266 NNFVGEIPFSLGNLSCLTSFILSDNNIVGEIPSSFGNLNQLDILNVKSNKLSGSFPIALL 325

Query:   121 XXXXXXXXXXXXXXXTGSL 139
                            TG+L
Sbjct:   326 NLRKLSTLSLFNNRLTGTL 344

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 49/114 (42%), Positives = 64/114 (56%)

Query:     3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62
             SL  +    N L G LP      L NL  L L  N   G+IP ++ N  RL  ++L  + 
Sbjct:   212 SLKVLGLAENLLEGSLPKQL-EKLQNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENY 270

Query:    63 FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
             F+G+IP+EIG +TK+ RLYL  NQL GEIP E+GNL +   +    N LT  IP
Sbjct:   271 FTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIP 324

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 47/115 (40%), Positives = 69/115 (60%)

Query:     2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
             S+L  +     ++ G LP +    L  LE+L +   M  G+IPS L NC  L ++ L  +
Sbjct:   226 SNLTVLGLAETSVSGNLPSSL-GKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYEN 284

Query:    62 DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
               SG+IP+EIG +TKL +L+L  N L G IPEE+GN + L+M+ L  N L+ +IP
Sbjct:   285 SLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIP 339

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 46/105 (43%), Positives = 60/105 (57%)

Query:    12 NTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI 71
             N L GE+PP     LSNL++L L  N  +G IPS +    ++  I++  +  +G IP   
Sbjct:   152 NQLVGEIPPEL-GDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSF 210

Query:    72 GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
             GN+TKL+ LYL  N L G IP E+GNL  L  L L  N LT  IP
Sbjct:   211 GNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIP 255

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	140
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 96.1 bits (239), Expect = 4e-24
 Identities = 61/138 (44%), Positives = 81/138 (58%), Gaps = 1/138 (0%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
           SSL  +    N L G++P +  N L++LE L L +N   G+IP  L   K L+ I L  +
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222

Query: 62  DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN 121
           + SG IP EIG +T L  L L  N L G IP  LGNL  L+ L+L  N L+  IP SIF+
Sbjct: 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282

Query: 122 LSSLSNLDLSVNNLTGSL 139
           L  L +LDLS N+L+G +
Sbjct: 283 LQKLISLDLSDNSLSGEI 300

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 95.3 bits (237), Expect = 8e-24
 Identities = 55/138 (39%), Positives = 79/138 (57%), Gaps = 3/138 (2%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
           SSL  +  +NN   G +P      + NLE+L L NNM  G+IP+ + +   L+ + L  +
Sbjct: 118 SSLRYLNLSNNNFTGSIPRGS---IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN 174

Query: 62  DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN 121
              G IP  + N+T L  L L  NQL G+IP ELG +  L+ ++L  N L+  IP  I  
Sbjct: 175 VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234

Query: 122 LSSLSNLDLSVNNLTGSL 139
           L+SL++LDL  NNLTG +
Sbjct: 235 LTSLNHLDLVYNNLTGPI 252

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 82.2 bits (203), Expect = 3e-19
 Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 1/139 (0%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           ++SL  +    N L G +P +  N L NL+ LFL  N   G IP ++ + ++L ++ LS 
Sbjct: 235 LTSLNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  SG IP+ +  +  L  L+L  N   G+IP  L +L  L++L L +N  +  IP ++ 
Sbjct: 294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353

Query: 121 NLSSLSNLDLSVNNLTGSL 139
             ++L+ LDLS NNLTG +
Sbjct: 354 KHNNLTVLDLSTNNLTGEI 372

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 80.7 bits (199), Expect = 1e-18
 Identities = 56/139 (40%), Positives = 81/139 (58%), Gaps = 1/139 (0%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + +L ++  +NN L GE+P N     S+L+ L L  N+  GKIP++L+N   L  ++L+ 
Sbjct: 139 IPNLETLDLSNNMLSGEIP-NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +   G IP+E+G +  L  +YL  N L GEIP E+G L  L  L L  N LT  IPSS+ 
Sbjct: 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257

Query: 121 NLSSLSNLDLSVNNLTGSL 139
           NL +L  L L  N L+G +
Sbjct: 258 NLKNLQYLFLYQNKLSGPI 276

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 79.5 bits (196), Expect = 3e-18
 Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 24/161 (14%)

Query: 2   SSLLSIRFTNNTLFGELPPNFC------------NHLS-----------NLESLFLKNNM 38
            SL  +R  +N+  GELP  F             N+L            +L+ L L  N 
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463

Query: 39  FHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNL 98
           F G +P      KRL N+ LS + FSG +P+++G++++L++L L  N+L GEIP+EL + 
Sbjct: 464 FFGGLPD-SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSC 522

Query: 99  AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL 139
            +L  L L +N L+  IP+S   +  LS LDLS N L+G +
Sbjct: 523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.0 bits (192), Expect = 9e-18
 Identities = 52/139 (37%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           M SL  +    N  FG LP +F +    LE+L L  N F G +P  L +   L  + LS 
Sbjct: 451 MPSLQMLSLARNKFFGGLPDSFGS--KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  SG IP E+ +  KL+ L L  NQL G+IP     +  L  L L  N L+  IP ++ 
Sbjct: 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG 568

Query: 121 NLSSLSNLDLSVNNLTGSL 139
           N+ SL  +++S N+L GSL
Sbjct: 569 NVESLVQVNISHNHLHGSL 587

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 77.2 bits (190), Expect = 2e-17
 Identities = 55/139 (39%), Positives = 75/139 (53%), Gaps = 1/139 (0%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L+S+  ++N+L GE+P      L NLE L L +N F GKIP  L++  RL+ + L  
Sbjct: 283 LQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           + FSG IPK +G    L  L L  N L GEIPE L +   L  L L +N L   IP S+ 
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401

Query: 121 NLSSLSNLDLSVNNLTGSL 139
              SL  + L  N+ +G L
Sbjct: 402 ACRSLRRVRLQDNSFSGEL 420

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 76.4 bits (188), Expect = 3e-17
 Identities = 55/139 (39%), Positives = 72/139 (51%), Gaps = 1/139 (0%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           M SL  I    N L GE+P      L++L  L L  N   G IPS+L N K L+ + L  
Sbjct: 211 MKSLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ 269

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  SG IP  I ++ KLI L L  N L GEIPE +  L  LE+L L +N  T  IP ++ 
Sbjct: 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329

Query: 121 NLSSLSNLDLSVNNLTGSL 139
           +L  L  L L  N  +G +
Sbjct: 330 SLPRLQVLQLWSNKFSGEI 348

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 75.3 bits (185), Expect = 9e-17
 Identities = 52/134 (38%), Positives = 69/134 (51%), Gaps = 2/134 (1%)

Query: 6   SIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSG 65
           +I  +NN L G +P +     S+L  L L NN F G IP        L  + LS +  SG
Sbjct: 97  TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN--LETLDLSNNMLSG 154

Query: 66  TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSL 125
            IP +IG+ + L  L L GN L G+IP  L NL  LE L L +N L   IP  +  + SL
Sbjct: 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214

Query: 126 SNLDLSVNNLTGSL 139
             + L  NNL+G +
Sbjct: 215 KWIYLGYNNLSGEI 228

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.7 bits (168), Expect = 2e-14
 Identities = 33/91 (36%), Positives = 51/91 (56%)

Query: 29  LESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQ 88
           ++ L L N    G IP+ +S  + L++I+LS +   G IP  +G++T L  L L  N   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 89  GEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
           G IPE LG L  L +L L  N L+  +P+++
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.4 bits (162), Expect = 1e-13
 Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 2/130 (1%)

Query: 10  TNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPK 69
           + N L GE+P   C+   NL  L L +N   G+IP +L  C+ LR + L  + FSG +P 
Sbjct: 364 STNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS 422

Query: 70  EIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLD 129
           E   +  +  L +  N LQG I     ++  L+ML L  N     +P S F    L NLD
Sbjct: 423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLD 481

Query: 130 LSVNNLTGSL 139
           LS N  +G++
Sbjct: 482 LSRNQFSGAV 491

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 64.5 bits (157), Expect = 5e-13
 Identities = 44/129 (34%), Positives = 61/129 (47%), Gaps = 1/129 (0%)

Query: 11  NNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKE 70
           +N   GE+P N   H +NL  L L  N   G+IP  L +   L  + L  +   G IPK 
Sbjct: 341 SNKFSGEIPKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399

Query: 71  IGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDL 130
           +G    L R+ L+ N   GE+P E   L  +  L + NN L   I S  +++ SL  L L
Sbjct: 400 LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459

Query: 131 SVNNLTGSL 139
           + N   G L
Sbjct: 460 ARNKFFGGL 468

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.3 bits (154), Expect = 1e-12
 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 11  NNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKE 70
           N  L G +P N  + L +L+S+ L  N   G IP +L +   L  + LS + F+G+IP+ 
Sbjct: 427 NQGLRGFIP-NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485

Query: 71  IGNVTKLIRLYLRGNQLQGEIPEELG 96
           +G +T L  L L GN L G +P  LG
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 58.7 bits (142), Expect = 5e-11
 Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 23/140 (16%)

Query: 23  CNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI----------- 71
           CN+ S + S+ L      GKI S +     ++ I+LS +  SG IP +I           
Sbjct: 65  CNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN 124

Query: 72  ------------GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
                       G++  L  L L  N L GEIP ++G+ + L++L L  N L   IP+S+
Sbjct: 125 LSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184

Query: 120 FNLSSLSNLDLSVNNLTGSL 139
            NL+SL  L L+ N L G +
Sbjct: 185 TNLTSLEFLTLASNQLVGQI 204

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 58  LSLDD--FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAI 115
           L LD+    G IP +I  +  L  + L GN ++G IP  LG++  LE+L L  N    +I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 116 PSSIFNLSSLSNLDLSVNNLTGSL 139
           P S+  L+SL  L+L+ N+L+G +
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 46  TLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLA-ELEML 104
           T +N  R+ +I LS  + SG I   I  +  +  + L  NQL G IP+++   +  L  L
Sbjct: 64  TCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYL 123

Query: 105 WLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL 139
            L NN  T +IP    ++ +L  LDLS N L+G +
Sbjct: 124 NLSNNNFTGSIPRG--SIPNLETLDLSNNMLSGEI 156

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.8
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.79
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.56
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.54
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.54
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.54
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.51
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.41
PLN03150	623	hypothetical protein; Provisional	99.4
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.38
PLN03150	623	hypothetical protein; Provisional	99.36
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.34
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.32
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.29
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.28
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.27
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.25
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.24
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.23
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.21
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.2
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.17
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.14
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.08
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.06
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.02
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.89
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.83
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.78
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.75
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.72
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.67
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.66
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.66
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.6
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.58
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.58
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.55
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.39
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.38
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.38
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.35
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.35
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.31
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.3
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.25
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.24
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.21
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.18
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	98.09
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.02
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.98
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.94
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.85
PRK15386	426	type III secretion protein GogB; Provisional	97.73
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.51
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.49
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.49
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.4
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.1
PRK15386	426	type III secretion protein GogB; Provisional	97.09
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.65
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.44
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.83
smart00370	26	LRR Leucine-rich repeats, outliers.	94.87
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.87
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.6
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.48
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.28
KOG4341	483	consensus F-box protein containing LRR [General fu	94.15
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.09
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	91.75
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.05
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	88.33
KOG4341	483	consensus F-box protein containing LRR [General fu	87.07
KOG4308	478	consensus LRR-containing protein [Function unknown	86.68
KOG0473	326	consensus Leucine-rich repeat protein [Function un	81.89
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	81.06

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.80  E-value=3.7e-19  Score=133.51  Aligned_cols=134  Identities=41%  Similarity=0.615  Sum_probs=63.7

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   82 (140)
                      +|+.|++++|.+.+.+|..+ ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+.+|+.+++
T Consensus       141 ~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        141 NLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            34444444444433333333 34455555555555554444554555555555555555544444444444445555555


Q ss_pred             cCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      ++|.+.+..|..+..+++|+++++++|.+++..|..+..+++|+.|++++|.+.+
T Consensus       220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  274 (968)
T PLN00113        220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG  274 (968)
T ss_pred             cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence            5544444444444444445555554444444444444444444444444444433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.79  E-value=5.8e-19  Score=132.48  Aligned_cols=138  Identities=43%  Similarity=0.662  Sum_probs=91.3

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++|+.|++++|.+.+.+|..+ ..+++|++|++++|.+.+..|..+..+++|+.|++.+|.+++..|..+..+++|+.|
T Consensus       163 l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  241 (968)
T PLN00113        163 FSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL  241 (968)
T ss_pred             CCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence            3567777777777766666654 567777777777777766666666667777777777776665666666666667777


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceec
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL  139 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  139 (140)
                      ++++|.+.+..|..+..+++|+++++++|.+++..|..+..+++|+.|++++|.+.+.+
T Consensus       242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  300 (968)
T PLN00113        242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI  300 (968)
T ss_pred             ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence            77666666666666666666666666666666555555556666666666666555443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.56  E-value=4.9e-17  Score=97.86  Aligned_cols=128  Identities=30%  Similarity=0.555  Sum_probs=74.4

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   82 (140)
                      +++.|.+++|.++ .+|+.+ +.+.+|+.|.+.+|++. .+|.+++++++|+.|++..|++. ..|..|+.++.|+.+++
T Consensus        34 ~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   34 NITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence            4455566666663 556655 55667777777777766 56666666777777776666665 56666666666666666


Q ss_pred             cCCcccc-c-----------------------CChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459           83 RGNQLQG-E-----------------------IPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus        83 ~~~~~~~-~-----------------------~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (140)
                      ..|.+.. .                       .|..++.++++..+.+.+|.+. .+|..++.++.|++|.+++|.+
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence            6665542 2                       2333444444555554444443 3445555555555555555543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.54  E-value=1.7e-16  Score=95.61  Aligned_cols=107  Identities=29%  Similarity=0.489  Sum_probs=88.7

Q ss_pred             CCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEE
Q 032459           25 HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEML  104 (140)
Q Consensus        25 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l  104 (140)
                      .+..++.|.++.|.++ .+|..++.+.+|+.|++.+|.+. ..|..++.+++|++++++.|++. ..|..|+.++.++++
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            4678899999999999 78888999999999999999999 78999999999999999999987 789999999999999


Q ss_pred             ecccccccc-cCcccccCCCCCCeEEcCCCc
Q 032459          105 WLQNNFLTR-AIPSSIFNLSSLSNLDLSVNN  134 (140)
Q Consensus       105 ~l~~~~~~~-~~~~~~~~~~~L~~l~l~~n~  134 (140)
                      ++.-|.+.+ .+|..|+-+..|+.|++++|.
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dnd  138 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDND  138 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCC
Confidence            998777653 345555555555555555553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.54  E-value=2.2e-15  Score=105.09  Aligned_cols=133  Identities=24%  Similarity=0.226  Sum_probs=68.7

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecccc-------------------
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDF-------------------   63 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~-------------------   63 (140)
                      ++++|++++|.++ .+....|.++..|..|.|+.|.++...+..|..+++|+.|++.+|++                   
T Consensus       174 ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl  252 (873)
T KOG4194|consen  174 NIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL  252 (873)
T ss_pred             CceEEeecccccc-ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence            4555666666553 33433344555555555555555522222333344555555444443                   


Q ss_pred             -----ccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459           64 -----SGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        64 -----~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (140)
                           .......|..+.+++++++..|++.......+..+..|++|+++.|.+..+.++.|.-.++|++|+++.|.++
T Consensus       253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~  330 (873)
T KOG4194|consen  253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT  330 (873)
T ss_pred             hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence                 3223344445555566666655555333344445555666666666665555566666666666666665543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.54  E-value=1.1e-15  Score=106.69  Aligned_cols=132  Identities=22%  Similarity=0.176  Sum_probs=82.0

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++|+.|++..|.+. ....-.|++++.|+.|.+..|.+...-.+.|..+.+++.|++..|+++.....++..+..|+.|+
T Consensus       221 ~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~  299 (873)
T KOG4194|consen  221 PKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLD  299 (873)
T ss_pred             chhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhc
Confidence            34444444444432 22222334444444444555555544455666677788888888887766666777777788888


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCc
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNN  134 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~  134 (140)
                      ++.|.|....++.+...++|++|+++.|.++...++.+..+..|++|.++.|.
T Consensus       300 lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns  352 (873)
T KOG4194|consen  300 LSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS  352 (873)
T ss_pred             cchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence            88887777777777777788888888877776655555555555555555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.51  E-value=4.6e-14  Score=86.36  Aligned_cols=124  Identities=30%  Similarity=0.395  Sum_probs=52.5

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhh-ccCCCccEEE
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNVTKLIRLY   81 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~l~   81 (140)
                      ++++|+++++.+. .+. .+-..+.+|+.|++++|+++ .+. .+..++.|+.|++++|+++. ..+.+ ..+++|+.|.
T Consensus        20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred             ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence            5788999999885 443 33235789999999999998 343 46788999999999999984 34444 4688999999


Q ss_pred             ecCCcccccC-ChhccCCCCCcEEecccccccccCc---ccccCCCCCCeEEcC
Q 032459           82 LRGNQLQGEI-PEELGNLAELEMLWLQNNFLTRAIP---SSIFNLSSLSNLDLS  131 (140)
Q Consensus        82 l~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~---~~~~~~~~L~~l~l~  131 (140)
                      +++|++.+.. ...+..+++|+.+++.+|+++...-   .++..+|+|+.||-.
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            9999987433 3667788999999999999985421   245678999988753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.41  E-value=1.6e-14  Score=102.16  Aligned_cols=132  Identities=24%  Similarity=0.384  Sum_probs=91.8

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   82 (140)
                      ++-.|++++|.+ +++|..+|-.+..|-.|||++|.+. .+|..+..+..||+|.+++|.+.-..-..+..|..|+.|.+
T Consensus       127 n~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm  204 (1255)
T KOG0444|consen  127 NSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM  204 (1255)
T ss_pred             CcEEEEcccCcc-ccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence            445677777776 4777777777777777788888776 67777777778888888877765322334445566666666


Q ss_pred             cCCccc-ccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           83 RGNQLQ-GEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        83 ~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      ++.+.+ ...|..+..+.+|+-++++.|.+. .+|+.+..+++|+.|++++|.+++
T Consensus       205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite  259 (1255)
T KOG0444|consen  205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE  259 (1255)
T ss_pred             ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee
Confidence            665443 345666667777777788777775 667777788888888888887653

>PLN03150 hypothetical protein; Provisional

Probab=99.40  E-value=1.4e-12  Score=94.31  Aligned_cols=106  Identities=32%  Similarity=0.517  Sum_probs=75.2

Q ss_pred             ccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEeccc
Q 032459           29 LESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN  108 (140)
Q Consensus        29 L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~  108 (140)
                      ++.|+|.+|++.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            66677777777777777777777777777777777766677777777777777777777777777777777777777777


Q ss_pred             ccccccCcccccCC-CCCCeEEcCCCc
Q 032459          109 NFLTRAIPSSIFNL-SSLSNLDLSVNN  134 (140)
Q Consensus       109 ~~~~~~~~~~~~~~-~~L~~l~l~~n~  134 (140)
                      |.+++..|..+... .++..+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            77777777665542 345566666654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.38  E-value=1e-12  Score=80.51  Aligned_cols=109  Identities=25%  Similarity=0.327  Sum_probs=44.0

Q ss_pred             CCCcccEEEccCCccccCCCcCCc-CCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhc-cCCCCCc
Q 032459           25 HLSNLESLFLKNNMFHGKIPSTLS-NCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEEL-GNLAELE  102 (140)
Q Consensus        25 ~l~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~~~~l~  102 (140)
                      ...++++|++.+|+|+. +. .+. .+.+|+.|++++|.++.  -+.+..+++|+.|++++|+++.. ...+ ..+++|+
T Consensus        17 n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred             ccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence            45578999999999983 33 344 57899999999999984  24677899999999999999843 3334 4689999


Q ss_pred             EEecccccccccCc-ccccCCCCCCeEEcCCCcccee
Q 032459          103 MLWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus       103 ~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~  138 (140)
                      .+++++|.+.+... ..+..+++|+.|++.+|++++.
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~  128 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK  128 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence            99999999976332 6678899999999999998753

>PLN03150 hypothetical protein; Provisional

Probab=99.36  E-value=3.2e-12  Score=92.42  Aligned_cols=107  Identities=31%  Similarity=0.533  Sum_probs=95.8

Q ss_pred             ceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEec
Q 032459            4 LLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR   83 (140)
Q Consensus         4 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   83 (140)
                      ++.|+++++.+.+.+|..+ ..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++..|..+..+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            6778999999988888887 779999999999999999999999999999999999999998899999999999999999


Q ss_pred             CCcccccCChhccCC-CCCcEEecccccc
Q 032459           84 GNQLQGEIPEELGNL-AELEMLWLQNNFL  111 (140)
Q Consensus        84 ~~~~~~~~~~~~~~~-~~l~~l~l~~~~~  111 (140)
                      +|.+.+..|..+... .++..+++.+|..
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcc
Confidence            999999999877643 4567788888764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.34  E-value=1.2e-13  Score=100.45  Aligned_cols=129  Identities=26%  Similarity=0.323  Sum_probs=90.1

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++|+.|++++|.+ +++|+..+.++..|++|+++||.++ .+|..+..++.|++|....|.+. ..| .+..++.|+.+
T Consensus       382 ~~hLKVLhLsyNrL-~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~l  457 (1081)
T KOG0618|consen  382 FKHLKVLHLSYNRL-NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVL  457 (1081)
T ss_pred             ccceeeeeeccccc-ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEE
Confidence            35777888888877 4777777777888888888888887 67777777888888888777776 455 66677888888


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCC
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVN  133 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n  133 (140)
                      |++.|.++.....+....++|++++++||.........+..+.++...++.-+
T Consensus       458 DlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  458 DLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             ecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            88888776433333233377888888888754444455556666666665544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.32  E-value=2e-13  Score=91.83  Aligned_cols=112  Identities=30%  Similarity=0.438  Sum_probs=94.8

Q ss_pred             cccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCC
Q 032459           22 FCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAEL  101 (140)
Q Consensus        22 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l  101 (140)
                      ...++++|+.|++++|-+. .+|..+..+..||.++++.|++- ..|..+.....++.+-.++|++....++.+..+.+|
T Consensus       430 ~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL  507 (565)
T KOG0472|consen  430 ELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL  507 (565)
T ss_pred             HHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence            3367889999999999888 78888888888999999999876 677777777778888788888886666778889999


Q ss_pred             cEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459          102 EMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus       102 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (140)
                      .++++.+|.+. .+|..++++++|+.|++.+|++.
T Consensus       508 ~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  508 TTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            99999999986 77889999999999999999885

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.29  E-value=3e-13  Score=95.83  Aligned_cols=109  Identities=28%  Similarity=0.387  Sum_probs=87.8

Q ss_pred             CCCceEEEccCCeec-ccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccE
Q 032459            1 MSSLLSIRFTNNTLF-GELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIR   79 (140)
Q Consensus         1 l~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   79 (140)
                      +|+|+.+.++.|.+. +-+|.++| .+..|+.|||+.|++. ++|..+....+.-.|++++|.|.....+.+.++..|-.
T Consensus        77 Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf  154 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF  154 (1255)
T ss_pred             chhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence            466777788888876 34888885 5889999999999998 89988888889999999999998544456667888888


Q ss_pred             EEecCCcccccCChhccCCCCCcEEeccccccc
Q 032459           80 LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLT  112 (140)
Q Consensus        80 l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~  112 (140)
                      |++++|++. ..|....++..|++|.+++|++.
T Consensus       155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             hccccchhh-hcCHHHHHHhhhhhhhcCCChhh
Confidence            999998887 56777777888888888888764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.28  E-value=8.2e-13  Score=88.34  Aligned_cols=134  Identities=28%  Similarity=0.309  Sum_probs=56.4

Q ss_pred             CCceEEEccCCeecccCCcccccCC---CcccEEEccCCcccc----CCCcCCcCC-CCCCEEEeeccccccC----cch
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHL---SNLESLFLKNNMFHG----KIPSTLSNC-KRLRNISLSLDDFSGT----IPK   69 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l---~~L~~L~l~~~~l~~----~~~~~~~~~-~~L~~l~l~~~~~~~~----~~~   69 (140)
                      ++|+.|++++|.+.+..+..+ ..+   ++|++|++++|.+.+    .+...+..+ ++|+.+++++|.++..    .+.
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             CceeEEEccCCCCChhHHHHH-HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            355555665555532222211 112   235555555555442    111122233 4555555555555421    112


Q ss_pred             hhccCCCccEEEecCCcccccC----ChhccCCCCCcEEecccccccccC----cccccCCCCCCeEEcCCCccc
Q 032459           70 EIGNVTKLIRLYLRGNQLQGEI----PEELGNLAELEMLWLQNNFLTRAI----PSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        70 ~~~~~~~L~~l~l~~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~n~~~  136 (140)
                      .+..+..++.+++++|.+.+..    +..+...++|+.+++++|.+++..    ...+..+++|+.|++++|.++
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            2333344555555555544221    112223345555555555443221    122233445555555555443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.27  E-value=2.3e-13  Score=99.00  Aligned_cols=128  Identities=29%  Similarity=0.383  Sum_probs=83.3

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   82 (140)
                      .|+.|++.+|.+++..-+.+ -.+++|+.|+|+.|.++......+.++..|+.|++++|+++ ..|.....+.+|+.|..
T Consensus       360 ~Lq~LylanN~Ltd~c~p~l-~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a  437 (1081)
T KOG0618|consen  360 ALQELYLANNHLTDSCFPVL-VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA  437 (1081)
T ss_pred             HHHHHHHhcCcccccchhhh-ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence            45556666666654433333 55667777777777666333334556666777777777766 55666666667777766


Q ss_pred             cCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCc
Q 032459           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNN  134 (140)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~  134 (140)
                      .+|.+. ..| ++...+.++.+|++.|.++..........++|++||+++|.
T Consensus       438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             cCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            666665 445 67777888888888888765433333444788888888875

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.25  E-value=1.1e-11  Score=63.45  Aligned_cols=61  Identities=38%  Similarity=0.554  Sum_probs=41.3

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecccc
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDF   63 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~   63 (140)
                      |+|++|++++|.+. .++...|..+++|++|++++|.++...+..|..+++|+.+++++|++
T Consensus         1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46677777777663 66666666677777777777777655556666677777777766653

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.24  E-value=1.8e-13  Score=92.05  Aligned_cols=125  Identities=33%  Similarity=0.548  Sum_probs=70.3

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcc-hhhccCCCccEEE
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIP-KEIGNVTKLIRLY   81 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~   81 (140)
                      +|++|+...|.+ +++|+++ ..+.+|..|+++.|.+. .+| .|..+..|+.+..+.|.+. ..| +...+++++..++
T Consensus       184 ~L~~ld~~~N~L-~tlP~~l-g~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLD  258 (565)
T KOG0472|consen  184 RLKHLDCNSNLL-ETLPPEL-GGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLD  258 (565)
T ss_pred             HHHhcccchhhh-hcCChhh-cchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeee
Confidence            444555555444 3555555 44555555555555555 444 4555555555555555555 333 2333566666666


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (140)
                      +.+|+++ ..|+++.-+.+++.+++++|.++ ..|-.++++ .|+.+.+-+|++
T Consensus       259 LRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  259 LRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             ccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence            6666666 55666655666666666666665 345556666 666666666654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.23  E-value=1.5e-12  Score=87.03  Aligned_cols=112  Identities=22%  Similarity=0.205  Sum_probs=51.3

Q ss_pred             CCcccEEEccCCccccC----CCcCCcCCCCCCEEEeeccccccCc----chhhccCCCccEEEecCCcccccCChhcc-
Q 032459           26 LSNLESLFLKNNMFHGK----IPSTLSNCKRLRNISLSLDDFSGTI----PKEIGNVTKLIRLYLRGNQLQGEIPEELG-   96 (140)
Q Consensus        26 l~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-   96 (140)
                      +++|++|++++|.+++.    ++..+..+++|+.|++++|.++...    ...+..+++|+.+++++|.+.+.....+. 
T Consensus       164 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~  243 (319)
T cd00116         164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS  243 (319)
T ss_pred             CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHH
Confidence            34455555555554421    1112223345555555555544221    12233445566666665555432221111 


Q ss_pred             ----CCCCCcEEecccccccc----cCcccccCCCCCCeEEcCCCccce
Q 032459           97 ----NLAELEMLWLQNNFLTR----AIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        97 ----~~~~l~~l~l~~~~~~~----~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                          ..+.|+.+++.+|.+++    ...+.+...++|+.+++++|.+++
T Consensus       244 ~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         244 ALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             HHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence                12456666666665542    122333444566666666666553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.21  E-value=1.6e-10  Score=88.85  Aligned_cols=58  Identities=22%  Similarity=0.356  Sum_probs=29.1

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecc
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD   61 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~   61 (140)
                      ++|+.|+++++.....+|. + ..+++|+.|++.+|.....+|..+..+++|+.|++.+|
T Consensus       634 ~~Lk~L~Ls~~~~l~~ip~-l-s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c  691 (1153)
T PLN03210        634 TGLRNIDLRGSKNLKEIPD-L-SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC  691 (1153)
T ss_pred             CCCCEEECCCCCCcCcCCc-c-ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence            4455555555443334442 1 34555555555555433445555555555555555544

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.20  E-value=2.9e-10  Score=87.40  Aligned_cols=125  Identities=29%  Similarity=0.337  Sum_probs=75.2

Q ss_pred             ceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEec
Q 032459            4 LLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR   83 (140)
Q Consensus         4 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   83 (140)
                      |+.|.+.++.+ ..+|..+  .+.+|++|++.++.+. .++..+..+++|+.++++++......| .+..+++|+.|+++
T Consensus       591 Lr~L~~~~~~l-~~lP~~f--~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~  665 (1153)
T PLN03210        591 LRLLRWDKYPL-RCMPSNF--RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLS  665 (1153)
T ss_pred             cEEEEecCCCC-CCCCCcC--CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEec
Confidence            44455555444 2445443  2456777777777766 455556667777777777654332333 35566777777777


Q ss_pred             CCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCc
Q 032459           84 GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNN  134 (140)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~  134 (140)
                      +|......|..+..+++|+.+++.+|.....+|..+ ++++|+.|++++|.
T Consensus       666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS  715 (1153)
T ss_pred             CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence            765544566666777777777777765333444333 45666666666654

syringae 6; Provisional

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.17  E-value=7e-11  Score=60.38  Aligned_cols=61  Identities=34%  Similarity=0.449  Sum_probs=41.0

Q ss_pred             CcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcc
Q 032459           27 SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQL   87 (140)
Q Consensus        27 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~   87 (140)
                      |+|++|++++|.++...+..|..+++|+++++++|.++...+..|..+++|+++++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4567777777777754445666677777777777777655556666777777777766653

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.14  E-value=1.3e-11  Score=81.50  Aligned_cols=135  Identities=19%  Similarity=0.220  Sum_probs=102.1

Q ss_pred             CCceEEEccCCeecccCCcc---cccCCCcccEEEccCCccccCC-------------CcCCcCCCCCCEEEeecccccc
Q 032459            2 SSLLSIRFTNNTLFGELPPN---FCNHLSNLESLFLKNNMFHGKI-------------PSTLSNCKRLRNISLSLDDFSG   65 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~l~~~~-------------~~~~~~~~~L~~l~l~~~~~~~   65 (140)
                      |+|+++++++|.+....+..   +..++..|++|+|.+|++....             .+-..+-+.|+++.+.+|++..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            68999999999997554433   4467889999999999987221             1223456889999999999874


Q ss_pred             C----cchhhccCCCccEEEecCCcccccC----ChhccCCCCCcEEeccccccccc----CcccccCCCCCCeEEcCCC
Q 032459           66 T----IPKEIGNVTKLIRLYLRGNQLQGEI----PEELGNLAELEMLWLQNNFLTRA----IPSSIFNLSSLSNLDLSVN  133 (140)
Q Consensus        66 ~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~n  133 (140)
                      .    +...+...+.++.+.++.|.+.-..    ...+.+++.|++|++.+|.++..    +...+..+++|+++++++|
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            3    2345666789999999999886322    24567899999999999998753    3355667888999999998


Q ss_pred             ccc
Q 032459          134 NLT  136 (140)
Q Consensus       134 ~~~  136 (140)
                      .+.
T Consensus       252 ll~  254 (382)
T KOG1909|consen  252 LLE  254 (382)
T ss_pred             ccc
Confidence            764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.10  E-value=2.6e-10  Score=83.76  Aligned_cols=102  Identities=26%  Similarity=0.383  Sum_probs=66.3

Q ss_pred             cccEEEccCCccccCCCcCCcC-----------------CCCCCEEEeeccccccCcchhhccCCCccEEEecCCccccc
Q 032459           28 NLESLFLKNNMFHGKIPSTLSN-----------------CKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGE   90 (140)
Q Consensus        28 ~L~~L~l~~~~l~~~~~~~~~~-----------------~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~   90 (140)
                      .|+.|++++|.++ .+|.....                 ..+|+.|++++|.++ ..|..   ...|+.|++++|.+. .
T Consensus       343 ~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-s  416 (788)
T PRK15387        343 GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-S  416 (788)
T ss_pred             ccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-C
Confidence            6778888888777 34432111                 124555666666555 23322   245666777777665 2


Q ss_pred             CChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceec
Q 032459           91 IPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL  139 (140)
Q Consensus        91 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  139 (140)
                      .|..   ..+++.+++++|.++ .+|..+..+++|+.+++++|++++.+
T Consensus       417 IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~  461 (788)
T PRK15387        417 LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT  461 (788)
T ss_pred             CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence            3432   245677888888887 56888889999999999999998764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.08  E-value=1.1e-11  Score=81.02  Aligned_cols=127  Identities=22%  Similarity=0.222  Sum_probs=65.4

Q ss_pred             ceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEec
Q 032459            4 LLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR   83 (140)
Q Consensus         4 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   83 (140)
                      |+++++++|.++ .+.... .-.|+++.|+++.|++.  ..+.+..+.+|+.|++++|.++ .....-..+.+++.+.+.
T Consensus       286 LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~--~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  286 LTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIR--TVQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhccccccchh-hhhhhh-hhccceeEEecccccee--eehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence            445555555553 333333 22455555555555555  1122445555555566555554 333333444555555555


Q ss_pred             CCcccccCChhccCCCCCcEEecccccccccC-cccccCCCCCCeEEcCCCccce
Q 032459           84 GNQLQGEIPEELGNLAELEMLWLQNNFLTRAI-PSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      .|.+.  ..+.+..+-+|..+++.+|.+.... .+.++++|-|+.+.+.+|++.+
T Consensus       361 ~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  361 QNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            55543  1233444455666666666664321 2455666666666666666654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.06  E-value=4.6e-12  Score=85.06  Aligned_cols=130  Identities=22%  Similarity=0.321  Sum_probs=75.9

Q ss_pred             ceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeec-cccccCcchhhccCCCccEEEe
Q 032459            4 LLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL-DDFSGTIPKEIGNVTKLIRLYL   82 (140)
Q Consensus         4 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~l~l   82 (140)
                      ..+|++..|.++ .+|+..|..+++|+.|||+.|+|+.+.|..|..++.+-.|.+.+ |+|+......|..+..++.|.+
T Consensus        69 tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   69 TVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             ceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            345666666663 66666666666666666666666666666666666655555444 6666444455556666666655


Q ss_pred             cCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCc
Q 032459           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNN  134 (140)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~  134 (140)
                      .-|.+.-...+.+..++++..|.+.+|.+...-...+..+.+++.+.+..|+
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            5555543334555566666666666666653322345555556665555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=3.1e-11  Score=81.92  Aligned_cols=63  Identities=25%  Similarity=0.296  Sum_probs=42.5

Q ss_pred             CCCccEEEecCCcccccCC-hhccCCCCCcEEeccccccccc-Cccc-----ccCCCCCCeEEcCCCccc
Q 032459           74 VTKLIRLYLRGNQLQGEIP-EELGNLAELEMLWLQNNFLTRA-IPSS-----IFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        74 ~~~L~~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~-~~~~-----~~~~~~L~~l~l~~n~~~  136 (140)
                      ++.|+.|++++|.+.+... .....++.|+.++++.+.+++. .|++     ...+++|+.|++..|++.
T Consensus       245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            4567788888887763321 3445678888888888877653 2232     345678888888888773

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.02  E-value=9e-10  Score=81.05  Aligned_cols=120  Identities=28%  Similarity=0.418  Sum_probs=68.6

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhc----------
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIG----------   72 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~----------   72 (140)
                      +|+.|++++|.+. .+|..+   ...|+.|++++|.++ .+|..+.  .+|+.|++++|.++. .|..+.          
T Consensus       242 ~L~~L~Ls~N~L~-~LP~~l---~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~  313 (754)
T PRK15370        242 TIQEMELSINRIT-ELPERL---PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQS  313 (754)
T ss_pred             cccEEECcCCccC-cCChhH---hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcC
Confidence            5677888888774 666654   246777777777776 4555443  467777777776652 232111          


Q ss_pred             ---------cCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459           73 ---------NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        73 ---------~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (140)
                               ..++|+.|.+++|.++. .|..+  .++|+.|++++|.++ .+|..+  .++|+.|++++|.++
T Consensus       314 N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt  380 (754)
T PRK15370        314 NSLTALPETLPPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT  380 (754)
T ss_pred             CccccCCccccccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC
Confidence                     01345555555555542 23222  246667777776665 334333  246677777776654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.95  E-value=8.5e-09  Score=76.05  Aligned_cols=53  Identities=17%  Similarity=0.375  Sum_probs=23.3

Q ss_pred             eEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccc
Q 032459            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS   64 (140)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~   64 (140)
                      ..|++.++.++ .+|..+   .+.++.|++++|.++ .+|..+.  .+|+.|++++|.++
T Consensus       181 ~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt  233 (754)
T PRK15370        181 TELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT  233 (754)
T ss_pred             eEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc
Confidence            34455544442 344433   234455555555554 3333222  24555555554444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.90  E-value=2.8e-10  Score=74.66  Aligned_cols=107  Identities=28%  Similarity=0.335  Sum_probs=85.2

Q ss_pred             cCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcE
Q 032459           24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM  103 (140)
Q Consensus        24 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~  103 (140)
                      ..+..|+++|+++|.|+ .+..+..-.|.++.|+++.|++..  -..++.+++|+++++++|.+. .....-..+-++++
T Consensus       281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT  356 (490)
T ss_pred             chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence            45568999999999998 666667778999999999999973  234888999999999999886 22222235678899


Q ss_pred             EecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459          104 LWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus       104 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (140)
                      +.+++|.+.  ....++.+.+|..||+++|.+.
T Consensus       357 L~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  357 LKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             eehhhhhHh--hhhhhHhhhhheeccccccchh
Confidence            999999885  3466788899999999999763

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.89  E-value=1.5e-10  Score=78.02  Aligned_cols=117  Identities=26%  Similarity=0.380  Sum_probs=98.3

Q ss_pred             ccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecC-CcccccCChh
Q 032459           16 GELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG-NQLQGEIPEE   94 (140)
Q Consensus        16 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~   94 (140)
                      ..+|.++   .+...+++|..|+|+...++.|..+++|+.+++++|.|+...|.+|..+..+..+.+-+ |+|++.....
T Consensus        59 ~eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~  135 (498)
T KOG4237|consen   59 TEVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA  135 (498)
T ss_pred             ccCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence            3566665   46788899999999977778999999999999999999988899999988876665555 8998666688


Q ss_pred             ccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459           95 LGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus        95 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (140)
                      |..+..+..|.+.-|.+.-...+.+..+++++.|.+-+|.+
T Consensus       136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~  176 (498)
T KOG4237|consen  136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI  176 (498)
T ss_pred             hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh
Confidence            88888888888888888767778899999999999988864

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.88  E-value=1.5e-09  Score=74.90  Aligned_cols=129  Identities=36%  Similarity=0.529  Sum_probs=78.3

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   82 (140)
                      +|+.|+++++.+. .++..+ ..++.|+.|++..|++. .++......+.|+.+++++|.+. ..|........++.+.+
T Consensus       141 nL~~L~l~~N~i~-~l~~~~-~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~  216 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPL-RNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDL  216 (394)
T ss_pred             hcccccccccchh-hhhhhh-hccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhh
Confidence            5777777777764 444333 45777777777777776 44444445666777777777666 33332222233444444


Q ss_pred             cCC-----------------------cccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459           83 RGN-----------------------QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus        83 ~~~-----------------------~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  138 (140)
                      ++|                       ++. ..+..+..++.++++++++|.++....  ++...+++.+++++|.+.+.
T Consensus       217 ~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         217 SNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             cCCcceecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence            444                       333 113445556668888888887764433  77778888888888766543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.83  E-value=2.9e-08  Score=73.36  Aligned_cols=96  Identities=22%  Similarity=0.346  Sum_probs=50.8

Q ss_pred             eEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhc------------
Q 032459            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIG------------   72 (140)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~------------   72 (140)
                      ..|+++.+.+. ++|..+.   ++|+.|++.+|+++ .+|..   .++|+.|++++|.++. .|..+.            
T Consensus       204 ~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L  274 (788)
T PRK15387        204 AVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPL  274 (788)
T ss_pred             cEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccCc-ccCcccccceeeccCCch
Confidence            34666666653 5666542   35666666666665 34432   3556666666665552 232110            


Q ss_pred             -----cCCCccEEEecCCcccccCChhccCCCCCcEEecccccccc
Q 032459           73 -----NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR  113 (140)
Q Consensus        73 -----~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~  113 (140)
                           ....|..|++++|++. ..|.   ..++|+.|++++|.+++
T Consensus       275 ~~Lp~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~  316 (788)
T PRK15387        275 THLPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS  316 (788)
T ss_pred             hhhhhchhhcCEEECcCCccc-cccc---cccccceeECCCCcccc
Confidence                 0123445555555554 2222   23568888888887764

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.78  E-value=2.7e-09  Score=73.63  Aligned_cols=131  Identities=39%  Similarity=0.613  Sum_probs=93.6

Q ss_pred             CCceEEEccCCeecccCCcccccCCC-cccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLS-NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +.++.+++.++.+. .++... ...+ +|+.|++++|.+. .++..+..++.|+.|+++.|.+. ..+......+.+..+
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL  191 (394)
T ss_pred             cceeEEecCCcccc-cCcccc-ccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence            35788899999885 677665 3353 8999999999998 66667789999999999999998 455555577899999


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccc----------------------cCcccccCCCCCCeEEcCCCccce
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR----------------------AIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~----------------------~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      ++++|++. ..|........++++.+++|.+..                      ..+..+..+++++.++++.|.++.
T Consensus       192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~  269 (394)
T COG4886         192 DLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS  269 (394)
T ss_pred             eccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccc
Confidence            99999988 445443444556666666663211                      113344555667777777776543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.75  E-value=1.1e-09  Score=76.95  Aligned_cols=103  Identities=27%  Similarity=0.451  Sum_probs=55.7

Q ss_pred             ccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEeccc
Q 032459           29 LESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN  108 (140)
Q Consensus        29 L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~  108 (140)
                      |+.|.+++|.++ .+|..+...++|..++.+.|.+. ..|..+..+..+..+.+.+|.+. ..|.++.. -.|..+|++.
T Consensus       145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfSc  220 (722)
T KOG0532|consen  145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSC  220 (722)
T ss_pred             ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-Cceeeeeccc
Confidence            344444444443 34444444444444444444443 23333444444444444444443 34545442 3466778888


Q ss_pred             ccccccCcccccCCCCCCeEEcCCCccc
Q 032459          109 NFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus       109 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (140)
                      |+++ .+|-.|.+|+.|++|-+.+|++.
T Consensus       221 Nkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  221 NKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             Ccee-ecchhhhhhhhheeeeeccCCCC
Confidence            8776 66777888888888888888763

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.72  E-value=8.6e-09  Score=66.82  Aligned_cols=136  Identities=18%  Similarity=0.196  Sum_probs=97.2

Q ss_pred             CCCceEEEccCCeecccCCccc---ccCCCcccEEEccCCccccCCCcCC-------------cCCCCCCEEEeeccccc
Q 032459            1 MSSLLSIRFTNNTLFGELPPNF---CNHLSNLESLFLKNNMFHGKIPSTL-------------SNCKRLRNISLSLDDFS   64 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~l~~~~~~~~-------------~~~~~L~~l~l~~~~~~   64 (140)
                      ||+|+++++++|.+....|..+   .++...|.+|.+++|++--.....+             .+-|.|+++.+.+|++.
T Consensus        91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238          91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            6899999999999987777653   3677899999999998762211122             34688999999999987


Q ss_pred             cCcc----hhhccCCCccEEEecCCcccccCCh-----hccCCCCCcEEeccccccccc----CcccccCCCCCCeEEcC
Q 032459           65 GTIP----KEIGNVTKLIRLYLRGNQLQGEIPE-----ELGNLAELEMLWLQNNFLTRA----IPSSIFNLSSLSNLDLS  131 (140)
Q Consensus        65 ~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~-----~~~~~~~l~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~  131 (140)
                      ....    ..+..-..+..+.+..|.|......     .+..+.+|+++++.+|.++..    +.+.+..++.|++|.+.
T Consensus       171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln  250 (388)
T COG5238         171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN  250 (388)
T ss_pred             cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence            3222    2233335788899999888633211     233568899999999988754    33445567788999999


Q ss_pred             CCccc
Q 032459          132 VNNLT  136 (140)
Q Consensus       132 ~n~~~  136 (140)
                      +|.++
T Consensus       251 DClls  255 (388)
T COG5238         251 DCLLS  255 (388)
T ss_pred             chhhc
Confidence            88764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.67  E-value=1.1e-07  Score=59.13  Aligned_cols=106  Identities=23%  Similarity=0.258  Sum_probs=77.3

Q ss_pred             CCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccC-ChhccCCCCCcE
Q 032459           25 HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEI-PEELGNLAELEM  103 (140)
Q Consensus        25 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~l~~  103 (140)
                      .......+||.+|.+.  -...|..++.|.+|.+.+|+|+...|..-..++++..|.+.+|.+.... ..-+..+++|+.
T Consensus        40 ~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   40 TLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             cccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            3456778889888876  2234667888999999999998665555556778999999998876332 244667889999


Q ss_pred             EecccccccccCc---ccccCCCCCCeEEcCC
Q 032459          104 LWLQNNFLTRAIP---SSIFNLSSLSNLDLSV  132 (140)
Q Consensus       104 l~l~~~~~~~~~~---~~~~~~~~L~~l~l~~  132 (140)
                      +.+-+|+++...-   -++..+|+|+.||++.
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            9999998874311   2345778899998864

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=2.9e-09  Score=72.57  Aligned_cols=86  Identities=20%  Similarity=0.323  Sum_probs=55.8

Q ss_pred             CCCCCEEEeeccccccCcc--hhhccCCCccEEEecCCcccccC-Chh-----ccCCCCCcEEecccccccccCc-cccc
Q 032459           50 CKRLRNISLSLDDFSGTIP--KEIGNVTKLIRLYLRGNQLQGEI-PEE-----LGNLAELEMLWLQNNFLTRAIP-SSIF  120 (140)
Q Consensus        50 ~~~L~~l~l~~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~-~~~-----~~~~~~l~~l~l~~~~~~~~~~-~~~~  120 (140)
                      +..|+.|++++|.+- ..+  .....++.|.-++++.+++.... |+.     ...++++++|++..|++.+.-. ..+.
T Consensus       245 ~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~  323 (505)
T KOG3207|consen  245 LQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR  323 (505)
T ss_pred             hhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhh
Confidence            566777777777654 233  34556788888888888876432 222     2356889999999998864322 3344


Q ss_pred             CCCCCCeEEcCCCccc
Q 032459          121 NLSSLSNLDLSVNNLT  136 (140)
Q Consensus       121 ~~~~L~~l~l~~n~~~  136 (140)
                      .+++|+.+.+..|.++
T Consensus       324 ~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  324 TLENLKHLRITLNYLN  339 (505)
T ss_pred             ccchhhhhhccccccc
Confidence            5567777776666654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.66  E-value=8.6e-10  Score=77.43  Aligned_cols=123  Identities=28%  Similarity=0.495  Sum_probs=96.2

Q ss_pred             EEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCC
Q 032459            6 SIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN   85 (140)
Q Consensus         6 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~   85 (140)
                      .+.+..|.+. .+|..+ ..+..|+.++|+.|+++ .+|..++.++ |+.|.+++|+++ ..|..++....+..++.+.|
T Consensus       102 ~liLy~n~~r-~ip~~i-~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~n  176 (722)
T KOG0532|consen  102 SLILYHNCIR-TIPEAI-CNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKN  176 (722)
T ss_pred             HHHHHhccce-ecchhh-hhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhh
Confidence            3344444442 566665 46788999999999998 6777775554 899999999998 67777778888999999999


Q ss_pred             cccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459           86 QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        86 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (140)
                      .+. ..|..+..+.+++.+.+..|.+. .+|..+..+ .|..||++.|+++
T Consensus       177 ei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis  224 (722)
T KOG0532|consen  177 EIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS  224 (722)
T ss_pred             hhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence            987 67888888899999999999886 556666644 6889999999875

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.60  E-value=7.2e-09  Score=68.84  Aligned_cols=133  Identities=23%  Similarity=0.248  Sum_probs=85.5

Q ss_pred             CCceEEEccCCeecccCCc----ccccCCCcccEEEccCCccccC----CCcCCcCCCCCCEEEeeccccccC----cch
Q 032459            2 SSLLSIRFTNNTLFGELPP----NFCNHLSNLESLFLKNNMFHGK----IPSTLSNCKRLRNISLSLDDFSGT----IPK   69 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~l~l~~~~~~~~----~~~   69 (140)
                      +.|+.+.+.+|.+. ..+.    ..++..+.|+++.++.|+|...    ....+..+++|+.|++..|.++..    ...
T Consensus       157 ~~Lrv~i~~rNrle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  157 PKLRVFICGRNRLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             cceEEEEeeccccc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            35677777777653 3232    2446677888888888776622    223456678888888888877632    234


Q ss_pred             hhccCCCccEEEecCCcccccCChhcc-----CCCCCcEEecccccccccCc----ccccCCCCCCeEEcCCCcc
Q 032459           70 EIGNVTKLIRLYLRGNQLQGEIPEELG-----NLAELEMLWLQNNFLTRAIP----SSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus        70 ~~~~~~~L~~l~l~~~~~~~~~~~~~~-----~~~~l~~l~l~~~~~~~~~~----~~~~~~~~L~~l~l~~n~~  135 (140)
                      .++.++.|..+++++|.+.......+.     ..++|+++.+.+|.++....    ..+...+.|+.|++++|.+
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            555667788888888877654433332     35778888888888764322    2334567788888888877

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.58  E-value=3.8e-08  Score=73.79  Aligned_cols=128  Identities=30%  Similarity=0.381  Sum_probs=88.1

Q ss_pred             CCceEEEccCCee-cccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            2 SSLLSIRFTNNTL-FGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         2 ~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      ++|+.|-+..+.. ...++..+|..++.|++||+++|.--+.+|..++.+-+|++|++..+.+. ..|..+..+..|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            4566666666652 34666666778888888888877655678888888888888888888887 778888888888888


Q ss_pred             EecCCcccccCChhccCCCCCcEEeccccccc--ccCcccccCCCCCCeEEc
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLT--RAIPSSIFNLSSLSNLDL  130 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~--~~~~~~~~~~~~L~~l~l  130 (140)
                      ++..+......+.....+.+|+++.+......  ......+..+.+|+.+..
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            88877654344555556788888887655421  122233344555554444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.58  E-value=1.1e-08  Score=74.95  Aligned_cols=134  Identities=20%  Similarity=0.264  Sum_probs=90.0

Q ss_pred             CceEEEccCCeec-ccCCcccccCCCcccEEEccCCccccC-CCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            3 SLLSIRFTNNTLF-GELPPNFCNHLSNLESLFLKNNMFHGK-IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         3 ~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +|+.|++++.... ...+.....-+|.|+.|.+.+..+... ......++++|..||++++.++..  ..++.+.+|+.|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L  200 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL  200 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence            5777888776543 334445556788999988888776522 223335688899999998888733  677788888888


Q ss_pred             EecCCcccc-cCChhccCCCCCcEEecccccccccC------cccccCCCCCCeEEcCCCcccee
Q 032459           81 YLRGNQLQG-EIPEELGNLAELEMLWLQNNFLTRAI------PSSIFNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus        81 ~l~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~------~~~~~~~~~L~~l~l~~n~~~~~  138 (140)
                      .+.+-.+.. .....+..+++|++||++..+.....      .+.-..+|+||-||++++.+.+.
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            877755542 22345667888999998876654221      11223578899999988876553

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.55  E-value=3.4e-09  Score=62.02  Aligned_cols=81  Identities=25%  Similarity=0.380  Sum_probs=39.6

Q ss_pred             ceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEec
Q 032459            4 LLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR   83 (140)
Q Consensus         4 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   83 (140)
                      |+.+++++|.+. ++|+.+-..++.++.+++.+|.+. .+|..++.++.|+.+++++|.+. ..|.-+..+.++..|+..
T Consensus        55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            344455555542 444444444445555555555554 44444555555555555555554 334444444444444444


Q ss_pred             CCcc
Q 032459           84 GNQL   87 (140)
Q Consensus        84 ~~~~   87 (140)
                      +|.+
T Consensus       132 ~na~  135 (177)
T KOG4579|consen  132 ENAR  135 (177)
T ss_pred             CCcc
Confidence            4443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.39  E-value=8.5e-07  Score=55.22  Aligned_cols=107  Identities=19%  Similarity=0.151  Sum_probs=80.5

Q ss_pred             cccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecc
Q 032459           28 NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQ  107 (140)
Q Consensus        28 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~  107 (140)
                      .-+++++.+.++..+ ...-........++++.|.+-  ....+..+++|.+|.+.+|+|+...|.--..++++..|.+.
T Consensus        20 ~e~e~~LR~lkip~i-enlg~~~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   20 RERELDLRGLKIPVI-ENLGATLDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT   96 (233)
T ss_pred             cccccccccccccch-hhccccccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence            456677887776622 111123456788899999884  45667889999999999999997766655567889999999


Q ss_pred             cccccccC-cccccCCCCCCeEEcCCCccce
Q 032459          108 NNFLTRAI-PSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus       108 ~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      +|.+.... .+.+..+|+|++|.+-+|+++.
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~  127 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEH  127 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchhc
Confidence            99987543 2667889999999999998754

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.38  E-value=5.6e-08  Score=67.68  Aligned_cols=107  Identities=30%  Similarity=0.369  Sum_probs=61.9

Q ss_pred             cCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcE
Q 032459           24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM  103 (140)
Q Consensus        24 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~  103 (140)
                      ..+..+..+++.+|.+. .+...+..+.+|+.|++++|.|+.  -..+..+..|+.|.+.+|.+...  ..+..+..++.
T Consensus        92 ~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~  166 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK--LEGLSTLTLLKELNLSGNLISDI--SGLESLKSLKL  166 (414)
T ss_pred             ccccceeeeeccccchh-hcccchhhhhcchheecccccccc--ccchhhccchhhheeccCcchhc--cCCccchhhhc
Confidence            44667777777777776 333325566777777777777753  23344555577777777766522  33334566666


Q ss_pred             EecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459          104 LWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus       104 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (140)
                      +++++|.++.........+.+++.+.+.+|.+
T Consensus       167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDELSELISLEELDLGGNSI  198 (414)
T ss_pred             ccCCcchhhhhhhhhhhhccchHHHhccCCch
Confidence            77777766543331034455566666666654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.38  E-value=3.5e-07  Score=43.33  Aligned_cols=35  Identities=40%  Similarity=0.521  Sum_probs=13.8

Q ss_pred             ccEEEccCCccccCCCcCCcCCCCCCEEEeeccccc
Q 032459           29 LESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS   64 (140)
Q Consensus        29 L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~   64 (140)
                      |++|++++|+++ .+|..+..+++|+.|++++|.++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            444444444444 23333344444444444444443

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.35  E-value=2.2e-09  Score=77.61  Aligned_cols=14  Identities=36%  Similarity=0.247  Sum_probs=5.4

Q ss_pred             cCCCccEEEecCCc
Q 032459           73 NVTKLIRLYLRGNQ   86 (140)
Q Consensus        73 ~~~~L~~l~l~~~~   86 (140)
                      .++.|++|+++.|.
T Consensus       207 ~l~~LkhLDlsyN~  220 (1096)
T KOG1859|consen  207 RLPKLKHLDLSYNC  220 (1096)
T ss_pred             hcccccccccccch
Confidence            33333333333333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.35  E-value=6.4e-07  Score=42.41  Aligned_cols=36  Identities=44%  Similarity=0.616  Sum_probs=16.3

Q ss_pred             CccEEEecCCcccccCChhccCCCCCcEEeccccccc
Q 032459           76 KLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLT  112 (140)
Q Consensus        76 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~  112 (140)
                      +|+.|++++|+++ ..+..+..+++|+++++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3455555555554 22333445555555555555444

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.31  E-value=1.7e-08  Score=59.11  Aligned_cols=84  Identities=26%  Similarity=0.377  Sum_probs=47.0

Q ss_pred             CCcccEEEccCCccccCCCcCCc-CCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEE
Q 032459           26 LSNLESLFLKNNMFHGKIPSTLS-NCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEML  104 (140)
Q Consensus        26 l~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l  104 (140)
                      ...|+..++++|++. ..|..|. .++...++++.+|.+. ..|..+..++.|+.+++..|.+. ..|..+..+.++..|
T Consensus        52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML  128 (177)
T ss_pred             CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence            345555666666665 3444332 3445666666666666 44555666666666666666655 334444445555555


Q ss_pred             eccccccc
Q 032459          105 WLQNNFLT  112 (140)
Q Consensus       105 ~l~~~~~~  112 (140)
                      +..+|.+.
T Consensus       129 ds~~na~~  136 (177)
T KOG4579|consen  129 DSPENARA  136 (177)
T ss_pred             cCCCCccc
Confidence            55555544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.30  E-value=7.5e-07  Score=67.09  Aligned_cols=108  Identities=27%  Similarity=0.339  Sum_probs=81.6

Q ss_pred             CCCcccEEEccCCc--cccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCc
Q 032459           25 HLSNLESLFLKNNM--FHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELE  102 (140)
Q Consensus        25 ~l~~L~~L~l~~~~--l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~  102 (140)
                      ..++|+.|-+..|.  +.......|..++.|++|++++|.-.+..|..++.+-+|++|+++++.+. ..|..++.+..|.
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI  621 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence            35578888888875  44233334667888999999887655578888888888899999888887 7788888888888


Q ss_pred             EEecccccccccCcccccCCCCCCeEEcCCC
Q 032459          103 MLWLQNNFLTRAIPSSIFNLSSLSNLDLSVN  133 (140)
Q Consensus       103 ~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n  133 (140)
                      +|++..+......+.....+.+|++|.+..-
T Consensus       622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  622 YLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             eeccccccccccccchhhhcccccEEEeecc
Confidence            8888877655455666666888888887543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=4.3e-09  Score=68.98  Aligned_cols=131  Identities=19%  Similarity=0.162  Sum_probs=77.5

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecc-ccccCcc-hhhccCCCccEE
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD-DFSGTIP-KEIGNVTKLIRL   80 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~-~~~~~~~~L~~l   80 (140)
                      +|+.++++...++-+.-..++..+.+|+.|.+.++++.+.+...+++...|+.++++.+ .++.... -.+..+..|+.|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            46677777776653322334466778888899999888877777888888999998876 3542222 234567788888


Q ss_pred             EecCCcccccCChhcc-C-CCCCcEEeccccccc--c-cCcccccCCCCCCeEEcCCC
Q 032459           81 YLRGNQLQGEIPEELG-N-LAELEMLWLQNNFLT--R-AIPSSIFNLSSLSNLDLSVN  133 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~-~-~~~l~~l~l~~~~~~--~-~~~~~~~~~~~L~~l~l~~n  133 (140)
                      ++++|.+....-..+. + -.+++.|+++|+.-.  . .+.--...++++..||+++|
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS  323 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence            8888875422111111 1 144555555554311  1 11111234556666666554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.24  E-value=2.5e-08  Score=72.38  Aligned_cols=107  Identities=34%  Similarity=0.358  Sum_probs=59.7

Q ss_pred             cCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcE
Q 032459           24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM  103 (140)
Q Consensus        24 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~  103 (140)
                      +-++.++.|+|+.|+++ .+. .+..+++|+.||+++|.+. ..|..-..-..|+.|.+.+|.++  ....+.++.+|..
T Consensus       184 qll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~--tL~gie~LksL~~  258 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT--TLRGIENLKSLYG  258 (1096)
T ss_pred             HHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH--hhhhHHhhhhhhc
Confidence            34566666677777666 232 4556667777777777665 33333222334666666666654  1233445566666


Q ss_pred             EecccccccccCc-ccccCCCCCCeEEcCCCcc
Q 032459          104 LWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus       104 l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~  135 (140)
                      |+++.|-+.+.-. ..++.+..|+.|.+.+|++
T Consensus       259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            6666666543211 2334455666666666654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.21  E-value=2.2e-07  Score=64.79  Aligned_cols=106  Identities=25%  Similarity=0.229  Sum_probs=77.4

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +.+|+.+++.+|.+. .+...+ ..+++|++|++++|.|+...  .+..++.|+.|++.+|.+..  ...+..+..++.+
T Consensus        94 ~~~l~~l~l~~n~i~-~i~~~l-~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l  167 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIE-KIENLL-SSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD--ISGLESLKSLKLL  167 (414)
T ss_pred             ccceeeeeccccchh-hcccch-hhhhcchheecccccccccc--chhhccchhhheeccCcchh--ccCCccchhhhcc
Confidence            357888889998875 443323 66899999999999998433  34577779999999999863  3445557889999


Q ss_pred             EecCCcccccCChhccCCCCCcEEeccccccc
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLT  112 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~  112 (140)
                      ++++|++....+.....+.+++.+.+.+|.+.
T Consensus       168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  168 DLSYNRIVDIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             cCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence            99999887443310456777888888888765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.18  E-value=1.1e-06  Score=64.63  Aligned_cols=112  Identities=21%  Similarity=0.210  Sum_probs=83.4

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccC-cchhhccCCCccE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT-IPKEIGNVTKLIR   79 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~   79 (140)
                      ||+|+.|.+.+-.+...--..++.++|+|..||+++++++. + .+++.+.+|+.|.+.+=.+... .-..+..+.+|+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            68999999999877534334566899999999999999983 3 6678899999998887776531 2245678999999


Q ss_pred             EEecCCcccccC--Chh----ccCCCCCcEEeccccccccc
Q 032459           80 LYLRGNQLQGEI--PEE----LGNLAELEMLWLQNNFLTRA  114 (140)
Q Consensus        80 l~l~~~~~~~~~--~~~----~~~~~~l~~l~l~~~~~~~~  114 (140)
                      ||++..+.....  ...    -..++.|+.+|.+++.+.+.
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            999987654221  111    11468999999999887654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.09  E-value=1.6e-06  Score=55.77  Aligned_cols=106  Identities=25%  Similarity=0.236  Sum_probs=68.3

Q ss_pred             cCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecc--ccccCcchhhccCCCccEEEecCCccccc-CChhccCCCC
Q 032459           24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD--DFSGTIPKEIGNVTKLIRLYLRGNQLQGE-IPEELGNLAE  100 (140)
Q Consensus        24 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~--~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~  100 (140)
                      ..+..|+.+++.+.+++  -...+..+++|+.|.++.|  ++.+..+.....+++|+++.++.|+++.. ....+..+.+
T Consensus        40 d~~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             ccccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            55667777777777776  2234567788888888888  55544444444558888888888888731 1123345667


Q ss_pred             CcEEecccccccccCc---ccccCCCCCCeEEcC
Q 032459          101 LEMLWLQNNFLTRAIP---SSIFNLSSLSNLDLS  131 (140)
Q Consensus       101 l~~l~l~~~~~~~~~~---~~~~~~~~L~~l~l~  131 (140)
                      |..+++..|..+...-   ..+..+++|..++-.
T Consensus       118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            7788887777664211   345556777766543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=2.3e-07  Score=61.06  Aligned_cols=129  Identities=19%  Similarity=0.189  Sum_probs=71.4

Q ss_pred             CceEEEccCCeecccCC-cccccCCCcccEEEccCCccccCCCc-CCcC-CCCCCEEEeeccccc--cCcchh-hccCCC
Q 032459            3 SLLSIRFTNNTLFGELP-PNFCNHLSNLESLFLKNNMFHGKIPS-TLSN-CKRLRNISLSLDDFS--GTIPKE-IGNVTK   76 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~-~~~L~~l~l~~~~~~--~~~~~~-~~~~~~   76 (140)
                      +|+.++++.|.-.++.. ..++.+++.|++|+++.|.+...... .+.+ -++++.|++++++-.  ...-+. ..++++
T Consensus       235 ~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~  314 (419)
T KOG2120|consen  235 NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN  314 (419)
T ss_pred             cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc
Confidence            34455555543222211 22334555666666666554421111 1111 245566666655432  111112 235788


Q ss_pred             ccEEEecCCc-ccccCChhccCCCCCcEEecccccccccCcc---cccCCCCCCeEEcCCC
Q 032459           77 LIRLYLRGNQ-LQGEIPEELGNLAELEMLWLQNNFLTRAIPS---SIFNLSSLSNLDLSVN  133 (140)
Q Consensus        77 L~~l~l~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~---~~~~~~~L~~l~l~~n  133 (140)
                      +.+|+++++- ++.....++..++.|+++.+++|.-  ..|.   .+...|+|.+|++.++
T Consensus       315 l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  315 LVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            8899998874 4544456677888899999988864  3343   3466788999988776

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.98  E-value=5.9e-05  Score=43.94  Aligned_cols=108  Identities=21%  Similarity=0.271  Sum_probs=40.3

Q ss_pred             CcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCC
Q 032459           19 PPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNL   98 (140)
Q Consensus        19 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~   98 (140)
                      +...|..+.+|+.+.+.. .+.......|..+..++.+.+..+ +.......+..++.++.+.+.+ .+.......+..+
T Consensus         4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence            334444455555555553 333333444555555666555543 3323334444554555555543 2221222334445


Q ss_pred             CCCcEEecccccccccCcccccCCCCCCeEEcC
Q 032459           99 AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLS  131 (140)
Q Consensus        99 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~  131 (140)
                      ++++.+.+..+ +.......+.+. +++.+.+.
T Consensus        81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             ccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            55555555443 322223334443 55555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.94  E-value=7.5e-05  Score=43.50  Aligned_cols=118  Identities=22%  Similarity=0.302  Sum_probs=63.5

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++|+.+.+... + ..+....|..++.++.+.+.++ +.......|..+..++.+.+.. .+.......+..+..++.+.
T Consensus        12 ~~l~~i~~~~~-~-~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   12 SNLESITFPNT-I-KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred             CCCCEEEECCC-e-eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence            46788887753 3 3677777788889999999885 6645556777887899999976 44434456777789999999


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCC
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLS  126 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~  126 (140)
                      +..+ +.......+... .++.+.+.. .++......|.++++|+
T Consensus        88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   88 IPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             ETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            9765 443444556665 888888765 34434456666666553

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.85  E-value=2.3e-05  Score=51.99  Aligned_cols=83  Identities=22%  Similarity=0.237  Sum_probs=46.2

Q ss_pred             CCceEEEccCCeeccc-CCcccccCCCcccEEEccCCccccCCCcCC-cCCCCCCEEEeeccccccCc-chhhccCCCcc
Q 032459            2 SSLLSIRFTNNTLFGE-LPPNFCNHLSNLESLFLKNNMFHGKIPSTL-SNCKRLRNISLSLDDFSGTI-PKEIGNVTKLI   78 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~   78 (140)
                      ++++++++.+|.+.+- -...++..+|.|+.|+++.|++...+ +.+ ....+|+++.+.++.+.+.. ...+..++.++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            3456677777766421 11224466777777777777776222 222 34556777777776665322 22334455566


Q ss_pred             EEEecCC
Q 032459           79 RLYLRGN   85 (140)
Q Consensus        79 ~l~l~~~   85 (140)
                      .++++.|
T Consensus       150 elHmS~N  156 (418)
T KOG2982|consen  150 ELHMSDN  156 (418)
T ss_pred             hhhhccc
Confidence            6655555

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.73  E-value=0.00033  Score=48.78  Aligned_cols=53  Identities=11%  Similarity=0.196  Sum_probs=33.0

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecc
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD   61 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~   61 (140)
                      ++++.|++++|.+ ..+| .+   .+.|++|.+.+|.--..+|..+  ..+|+.|.+++|
T Consensus        52 ~~l~~L~Is~c~L-~sLP-~L---P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         52 RASGRLYIKDCDI-ESLP-VL---PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             cCCCEEEeCCCCC-cccC-CC---CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            4677888888866 3666 22   3468888887744323455433  246777777776

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.51  E-value=7.5e-05  Score=48.29  Aligned_cols=92  Identities=20%  Similarity=0.197  Sum_probs=64.5

Q ss_pred             CCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCc--ccccCChhccCCCCCcEEeccccccccc-Ccccc
Q 032459           43 IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ--LQGEIPEELGNLAELEMLWLQNNFLTRA-IPSSI  119 (140)
Q Consensus        43 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~  119 (140)
                      +......+..|+.+.+.+..+++  -..+..+++|+.|.++.|.  +.+..+--...+++++++++++|++... ....+
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl  112 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL  112 (260)
T ss_pred             cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence            44444566778888888777763  3456678899999999994  4433332233559999999999998731 11345


Q ss_pred             cCCCCCCeEEcCCCccc
Q 032459          120 FNLSSLSNLDLSVNNLT  136 (140)
Q Consensus       120 ~~~~~L~~l~l~~n~~~  136 (140)
                      ..+.+|..|++..|..+
T Consensus       113 ~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVT  129 (260)
T ss_pred             hhhcchhhhhcccCCcc
Confidence            66778899999988654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.49  E-value=1.4e-05  Score=52.96  Aligned_cols=88  Identities=23%  Similarity=0.303  Sum_probs=56.3

Q ss_pred             cCCCcccEEEccCCcccc--CCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCC-hhccCCCC
Q 032459           24 NHLSNLESLFLKNNMFHG--KIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIP-EELGNLAE  100 (140)
Q Consensus        24 ~~l~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~  100 (140)
                      .....++++|+.+|.|++  .+..-+..+|.+++|+++.|.+.+..........++..+-+.+..+.+... ..+..++.
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            345678888888888873  333334567888888888888764332222355678888887777655433 33445666


Q ss_pred             CcEEecccccc
Q 032459          101 LEMLWLQNNFL  111 (140)
Q Consensus       101 l~~l~l~~~~~  111 (140)
                      ++.++++.|.+
T Consensus       148 vtelHmS~N~~  158 (418)
T KOG2982|consen  148 VTELHMSDNSL  158 (418)
T ss_pred             hhhhhhccchh
Confidence            67777766643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.49  E-value=1.8e-06  Score=56.49  Aligned_cols=81  Identities=21%  Similarity=0.304  Sum_probs=41.9

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcc-hhhccCCCccEEE
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIP-KEIGNVTKLIRLY   81 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~   81 (140)
                      +.++|++.+|.+. ++  .++..++.|++|.|+-|.|+..  ..+..++.|+.|++..|.|.+... ..+..+++|..|=
T Consensus        20 ~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3455666666553 22  2344566666666666666521  223455666666666666652211 2344455555555


Q ss_pred             ecCCccc
Q 032459           82 LRGNQLQ   88 (140)
Q Consensus        82 l~~~~~~   88 (140)
                      +..|.--
T Consensus        95 L~ENPCc  101 (388)
T KOG2123|consen   95 LDENPCC  101 (388)
T ss_pred             hccCCcc
Confidence            5554443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=2.9e-06  Score=55.55  Aligned_cols=102  Identities=27%  Similarity=0.295  Sum_probs=76.6

Q ss_pred             cCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccC-ChhccCCCCCc
Q 032459           24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEI-PEELGNLAELE  102 (140)
Q Consensus        24 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~l~  102 (140)
                      +.+.+.+.|++-+|+++++..  ...++.|++|.++-|+|++  -..+..+.+|+.+.+..|.|.+.. ...+.++++|+
T Consensus        16 sdl~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   16 SDLENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             hHHHHhhhhcccCCCccHHHH--HHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            346678888999999885432  2368999999999999974  355678889999999999886432 25567889999


Q ss_pred             EEecccccccccCcc-----cccCCCCCCeEE
Q 032459          103 MLWLQNNFLTRAIPS-----SIFNLSSLSNLD  129 (140)
Q Consensus       103 ~l~l~~~~~~~~~~~-----~~~~~~~L~~l~  129 (140)
                      .|.+..|+-.+..+.     ++..+|+|+.||
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            999999988765443     345667777665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.10  E-value=0.0017  Score=42.95  Aligned_cols=38  Identities=29%  Similarity=0.296  Sum_probs=21.5

Q ss_pred             CCCcEEecccccccccCcc-----cccCCCCCCeEEcCCCccc
Q 032459           99 AELEMLWLQNNFLTRAIPS-----SIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        99 ~~l~~l~l~~~~~~~~~~~-----~~~~~~~L~~l~l~~n~~~  136 (140)
                      ..++.+.+..|.+......     .++-+.+|+.||+++|-++
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            3455555555555432111     2234578888888888653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.09  E-value=0.0024  Score=44.65  Aligned_cols=50  Identities=20%  Similarity=0.291  Sum_probs=33.6

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCC-ccccCCCcCCcCCCCCCEEEeeccc
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNN-MFHGKIPSTLSNCKRLRNISLSLDD   62 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~l~l~~~~   62 (140)
                      +|+.|.+++|.-...+|..+   .+.|+.|++.+| .+. .+|.      .|+.|++..+.
T Consensus        73 sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~  123 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSA  123 (426)
T ss_pred             CCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cccc------ccceEEeCCCC
Confidence            68899999876656666544   358899999988 444 4443      35566665443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.65  E-value=0.0011  Score=26.29  Aligned_cols=11  Identities=27%  Similarity=0.425  Sum_probs=4.5

Q ss_pred             ceEEEccCCee
Q 032459            4 LLSIRFTNNTL   14 (140)
Q Consensus         4 L~~L~l~~~~~   14 (140)
                      |++|++++|.+
T Consensus         2 L~~Ldls~n~l   12 (22)
T PF00560_consen    2 LEYLDLSGNNL   12 (22)
T ss_dssp             ESEEEETSSEE
T ss_pred             ccEEECCCCcC
Confidence            33444444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.44  E-value=0.00037  Score=43.74  Aligned_cols=82  Identities=17%  Similarity=0.146  Sum_probs=40.9

Q ss_pred             cccEEEccCCccccCCCcCCcCCCCCCEEEeeccccc-cCcchhhc-cCCCccEEEecCC-cccccCChhccCCCCCcEE
Q 032459           28 NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS-GTIPKEIG-NVTKLIRLYLRGN-QLQGEIPEELGNLAELEML  104 (140)
Q Consensus        28 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~-~~~~L~~l~l~~~-~~~~~~~~~~~~~~~l~~l  104 (140)
                      .++.++-+++.|..+....+..++.++.|.+.++..- ...-+.++ -.++|+.|+++.| +|++.....+.++++|+.+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            4555665665555444445555666666666655432 11111122 2345666666655 3443333444455666665


Q ss_pred             ecccc
Q 032459          105 WLQNN  109 (140)
Q Consensus       105 ~l~~~  109 (140)
                      .+.+-
T Consensus       182 ~l~~l  186 (221)
T KOG3864|consen  182 HLYDL  186 (221)
T ss_pred             HhcCc
Confidence            55443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.83  E-value=0.0063  Score=22.42  Aligned_cols=9  Identities=44%  Similarity=0.423  Sum_probs=3.1

Q ss_pred             cEEEccCCc
Q 032459           30 ESLFLKNNM   38 (140)
Q Consensus        30 ~~L~l~~~~   38 (140)
                      ++|++++|+
T Consensus         4 ~~L~l~~n~   12 (17)
T PF13504_consen    4 RTLDLSNNR   12 (17)
T ss_dssp             SEEEETSS-
T ss_pred             CEEECCCCC
Confidence            333333333

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.87  E-value=0.022  Score=23.25  Aligned_cols=20  Identities=35%  Similarity=0.594  Sum_probs=9.3

Q ss_pred             CCceEEEccCCeecccCCccc
Q 032459            2 SSLLSIRFTNNTLFGELPPNF   22 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~   22 (140)
                      ++|+.|++.+|.+. .+|...
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHH
Confidence            44555555555442 444433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.87  E-value=0.022  Score=23.25  Aligned_cols=20  Identities=35%  Similarity=0.594  Sum_probs=9.3

Q ss_pred             CCceEEEccCCeecccCCccc
Q 032459            2 SSLLSIRFTNNTLFGELPPNF   22 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~   22 (140)
                      ++|+.|++.+|.+. .+|...
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~   21 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGA   21 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHH
Confidence            44555555555442 444433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.60  E-value=0.005  Score=43.62  Aligned_cols=12  Identities=42%  Similarity=0.421  Sum_probs=5.9

Q ss_pred             CCCcccEEEccC
Q 032459           25 HLSNLESLFLKN   36 (140)
Q Consensus        25 ~l~~L~~L~l~~   36 (140)
                      .++.|++|++.+
T Consensus       212 ~~~~L~~L~l~~  223 (482)
T KOG1947|consen  212 KCPNLEELDLSG  223 (482)
T ss_pred             hCchhheecccC
Confidence            344555555544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.48  E-value=0.0033  Score=39.60  Aligned_cols=90  Identities=17%  Similarity=0.150  Sum_probs=63.0

Q ss_pred             CCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcc-cccCChhcc-CCCCCcEEeccccc-ccccCcccc
Q 032459           43 IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQL-QGEIPEELG-NLAELEMLWLQNNF-LTRAIPSSI  119 (140)
Q Consensus        43 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~-~~~~l~~l~l~~~~-~~~~~~~~~  119 (140)
                      .|.....-..++.++.+++.+.+..-..+..+..++.+.+.++.- .+...+.+. -.++|+.|++++|+ ||+.....+
T Consensus        93 lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L  172 (221)
T KOG3864|consen   93 LPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL  172 (221)
T ss_pred             CCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH
Confidence            344333445688888888888766667778888888888888763 223233333 34889999999887 776656667


Q ss_pred             cCCCCCCeEEcCC
Q 032459          120 FNLSSLSNLDLSV  132 (140)
Q Consensus       120 ~~~~~L~~l~l~~  132 (140)
                      ..+++|+.|.+.+
T Consensus       173 ~~lknLr~L~l~~  185 (221)
T KOG3864|consen  173 LKLKNLRRLHLYD  185 (221)
T ss_pred             HHhhhhHHHHhcC
Confidence            7788888777764

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.28  E-value=0.014  Score=41.34  Aligned_cols=60  Identities=33%  Similarity=0.184  Sum_probs=28.0

Q ss_pred             CCCccEEEecCCc-ccccCChhcc-CCCCCcEEeccccc-ccccCc-ccccCCCCCCeEEcCCC
Q 032459           74 VTKLIRLYLRGNQ-LQGEIPEELG-NLAELEMLWLQNNF-LTRAIP-SSIFNLSSLSNLDLSVN  133 (140)
Q Consensus        74 ~~~L~~l~l~~~~-~~~~~~~~~~-~~~~l~~l~l~~~~-~~~~~~-~~~~~~~~L~~l~l~~n  133 (140)
                      +.+++.++++++. +++.....+. .+++|+.+.+.++. +++..- .....++.|++|+++.|
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c  305 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC  305 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence            3455555555554 3433333333 24556666555554 333222 22234555666666554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=94.15  E-value=0.012  Score=41.05  Aligned_cols=110  Identities=25%  Similarity=0.240  Sum_probs=55.1

Q ss_pred             cCCCcccEEEccCCc-cccCCCcCC-cCCCCCCEEEeeccccccC--cchhhccCCCccEEEecCCcc-cccCChhcc--
Q 032459           24 NHLSNLESLFLKNNM-FHGKIPSTL-SNCKRLRNISLSLDDFSGT--IPKEIGNVTKLIRLYLRGNQL-QGEIPEELG--   96 (140)
Q Consensus        24 ~~l~~L~~L~l~~~~-l~~~~~~~~-~~~~~L~~l~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~--   96 (140)
                      +..++|+.+.+.+|+ +++.-...+ .+++.|+.+++..+.....  ..+.-.+++.++.+.++.+.. ++.....+.  
T Consensus       317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~  396 (483)
T KOG4341|consen  317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS  396 (483)
T ss_pred             cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence            455677777776665 222111112 2456666666666543311  122223456677777765542 222111111  


Q ss_pred             --CCCCCcEEeccccccc-ccCcccccCCCCCCeEEcCCC
Q 032459           97 --NLAELEMLWLQNNFLT-RAIPSSIFNLSSLSNLDLSVN  133 (140)
Q Consensus        97 --~~~~l~~l~l~~~~~~-~~~~~~~~~~~~L~~l~l~~n  133 (140)
                        ....++.+.+++++.+ +.....+..+++|+.+++-++
T Consensus       397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             cccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence              3355666777776643 223344455667777666554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.09  E-value=0.028  Score=22.50  Aligned_cols=15  Identities=47%  Similarity=0.636  Sum_probs=8.6

Q ss_pred             CCCCeEEcCCCccce
Q 032459          123 SSLSNLDLSVNNLTG  137 (140)
Q Consensus       123 ~~L~~l~l~~n~~~~  137 (140)
                      ++|+.|++++|.+++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            466777777776654

...

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=91.75  E-value=0.12  Score=21.60  Aligned_cols=14  Identities=57%  Similarity=0.655  Sum_probs=9.2

Q ss_pred             CCCCeEEcCCCccc
Q 032459          123 SSLSNLDLSVNNLT  136 (140)
Q Consensus       123 ~~L~~l~l~~n~~~  136 (140)
                      ++|++|++++|.++
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            35677777777664

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.05  E-value=0.0041  Score=40.32  Aligned_cols=86  Identities=14%  Similarity=0.133  Sum_probs=59.7

Q ss_pred             cCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcE
Q 032459           24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM  103 (140)
Q Consensus        24 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~  103 (140)
                      ..+.+.+.||++.|++- ..-..+..++.+..++++.|.+. ..|..+.....+..++...|... ..|..+...+.+++
T Consensus        39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK  115 (326)
T ss_pred             hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence            55678888888888765 45555666777778888888776 56666666666666666666655 55666677777777


Q ss_pred             Eeccccccc
Q 032459          104 LWLQNNFLT  112 (140)
Q Consensus       104 l~l~~~~~~  112 (140)
                      +++-++.++
T Consensus       116 ~e~k~~~~~  124 (326)
T KOG0473|consen  116 NEQKKTEFF  124 (326)
T ss_pred             hhhccCcch
Confidence            777777665

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=88.33  E-value=0.44  Score=19.61  Aligned_cols=14  Identities=43%  Similarity=0.510  Sum_probs=8.5

Q ss_pred             CcccEEEccCCccc
Q 032459           27 SNLESLFLKNNMFH   40 (140)
Q Consensus        27 ~~L~~L~l~~~~l~   40 (140)
                      .+|++|+++.|.|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            45666666666664

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=87.07  E-value=0.34  Score=34.27  Aligned_cols=109  Identities=23%  Similarity=0.217  Sum_probs=65.1

Q ss_pred             CCceEEEccCCeecccCC-cccccCCCcccEEEccCCccc--cCCCcCCcCCCCCCEEEeecccc-ccCc----chhhcc
Q 032459            2 SSLLSIRFTNNTLFGELP-PNFCNHLSNLESLFLKNNMFH--GKIPSTLSNCKRLRNISLSLDDF-SGTI----PKEIGN   73 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~l~l~~~~~-~~~~----~~~~~~   73 (140)
                      ++|+.+-+..|...+..- ..+-.+++.|+.+++..+...  +.+...-.+++.|+.+.++.+.. +...    ...-..
T Consensus       320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~  399 (483)
T KOG4341|consen  320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS  399 (483)
T ss_pred             CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence            567788888876432221 223356778999998887654  12223334678889888887643 2111    111223


Q ss_pred             CCCccEEEecCCccc-ccCChhccCCCCCcEEeccccc
Q 032459           74 VTKLIRLYLRGNQLQ-GEIPEELGNLAELEMLWLQNNF  110 (140)
Q Consensus        74 ~~~L~~l~l~~~~~~-~~~~~~~~~~~~l~~l~l~~~~  110 (140)
                      +..++.+.+.+++.. +...+.+..+++|+.+++-++.
T Consensus       400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             ccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            456777888877643 3334555667788887776654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=86.68  E-value=0.0014  Score=46.84  Aligned_cols=38  Identities=32%  Similarity=0.316  Sum_probs=20.3

Q ss_pred             CCCcEEecccccccccC----cccccCCCCCCeEEcCCCccc
Q 032459           99 AELEMLWLQNNFLTRAI----PSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        99 ~~l~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~n~~~  136 (140)
                      ..++++++..|.+++..    .+.+...+.++++.++.|++.
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            44566666666665422    233344456666666666554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=81.89  E-value=0.018  Score=37.47  Aligned_cols=89  Identities=19%  Similarity=0.210  Sum_probs=64.7

Q ss_pred             CCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCC
Q 032459           46 TLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSL  125 (140)
Q Consensus        46 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L  125 (140)
                      .+......+.+|++.|+.. ..-..++-+..+..++++.|.+. ..|..+.....+..++...|... ..|..++..+.+
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            4556677888888888776 44556667778888999988887 66766665555555566666554 567888889999


Q ss_pred             CeEEcCCCccce
Q 032459          126 SNLDLSVNNLTG  137 (140)
Q Consensus       126 ~~l~l~~n~~~~  137 (140)
                      +.+++-.|++..
T Consensus       114 k~~e~k~~~~~~  125 (326)
T KOG0473|consen  114 KKNEQKKTEFFR  125 (326)
T ss_pred             chhhhccCcchH
Confidence            999988887643

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=81.06  E-value=0.9  Score=18.35  Aligned_cols=13  Identities=15%  Similarity=0.245  Sum_probs=7.4

Q ss_pred             CCCceEEEccCCe
Q 032459            1 MSSLLSIRFTNNT   13 (140)
Q Consensus         1 l~~L~~L~l~~~~   13 (140)
                      +++|+.|++++|.
T Consensus         1 c~~L~~L~l~~C~   13 (26)
T smart00367        1 CPNLRELDLSGCT   13 (26)
T ss_pred             CCCCCEeCCCCCC
Confidence            3556666666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	140
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-19
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-19
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-09

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/116 (46%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSN-LESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SLL++  ++N   G + PN C +  N L+ L+L+NN F GKIP TLSNC  L ++ LS 
Sbjct: 365 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
           +  SGTIP  +G+++KL  L L  N L+GEIP+EL  +  LE L L  N LT  IP
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 480

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 90.5 bits (223), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/116 (46%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSN-LESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SLL++  ++N   G + PN C +  N L+ L+L+NN F GKIP TLSNC  L ++ LS 
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
           +  SGTIP  +G+++KL  L L  N L+GEIP+EL  +  LE L L  N LT  IP
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 12  NTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI 71
           N L G +PP     L+ L  L++ +    G IP  LS  K L  +  S +  SGT+P  I
Sbjct: 87  NNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 72  GNVTKLIRLYLRGNQLQGEIPEELGNLAEL-EMLWLQNNFLTRAIP 116
            ++  L+ +   GN++ G IP+  G+ ++L   + +  N LT  IP
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	140
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-30
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-23
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	9e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	9e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	5e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  119 bits (301), Expect = 5e-34
 Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 5/143 (3%)

Query: 1   MSSLLSIRFTNNTLFGE--LPPNFCNHLSNLESLFL-KNNMFHGKIPSTLSNCKRLRNIS 57
              + ++  +   L     +P +  N L  L  L++   N   G IP  ++   +L  + 
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 58  LSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS 117
           ++  + SG IP  +  +  L+ L    N L G +P  + +L  L  +    N ++ AIP 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 118 SIFNLSSLSN-LDLSVNNLTGSL 139
           S  + S L   + +S N LTG +
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKI 190

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  110 bits (277), Expect = 2e-30
 Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 2/139 (1%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + +L+ I F  N + G +P ++ +      S+ +  N   GKIP T +N   L  + LS 
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +   G      G+     +++L  N L  ++ + +G    L  L L+NN +   +P  + 
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265

Query: 121 NLSSLSNLDLSVNNLTGSL 139
            L  L +L++S NNL G +
Sbjct: 266 QLKFLHSLNVSFNNLCGEI 284

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 92.2 bits (230), Expect = 1e-23
 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 3/107 (2%)

Query: 36  NNMFHGKIPSTLSNCKRLRNISLSLDDFSGT--IPKEIGNVTKLIRLYLRG-NQLQGEIP 92
           N  + G +  T +   R+ N+ LS  +      IP  + N+  L  LY+ G N L G IP
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 93  EELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL 139
             +  L +L  L++ +  ++ AIP  +  + +L  LD S N L+G+L
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 88.4 bits (220), Expect = 3e-22
 Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 4/133 (3%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
               S+  + N L G++PP F N   NL  + L  NM  G       + K  + I L+ +
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFAN--LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 62  DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN 121
             +  +  ++G    L  L LR N++ G +P+ L  L  L  L +  N L   IP    N
Sbjct: 232 SLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN 289

Query: 122 LSSLSNLDLSVNN 134
           L        + N 
Sbjct: 290 LQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 70.3 bits (173), Expect = 1e-15
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 7/105 (6%)

Query: 42  KIPSTLSNCKRLRN----ISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGE--IPEEL 95
           +I   L N   L +           + G +        ++  L L G  L     IP  L
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 96  GNLAELEMLWLQN-NFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL 139
            NL  L  L++   N L   IP +I  L+ L  L ++  N++G++
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI 117

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  123 bits (311), Expect = 7e-34
 Identities = 62/139 (44%), Positives = 88/139 (63%), Gaps = 1/139 (0%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCN-HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SLL++  ++N   G + PN C    + L+ L+L+NN F GKIP TLSNC  L ++ LS 
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  SGTIP  +G+++KL  L L  N L+GEIP+EL  +  LE L L  N LT  IPS + 
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487

Query: 121 NLSSLSNLDLSVNNLTGSL 139
           N ++L+ + LS N LTG +
Sbjct: 488 NCTNLNWISLSNNRLTGEI 506

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  123 bits (310), Expect = 9e-34
 Identities = 51/139 (36%), Positives = 74/139 (53%), Gaps = 1/139 (0%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
            S L+S+  + N L G +P +  + LS L  L L  NM  G+IP  L   K L  + L  
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +D +G IP  + N T L  + L  N+L GEIP+ +G L  L +L L NN  +  IP+ + 
Sbjct: 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535

Query: 121 NLSSLSNLDLSVNNLTGSL 139
           +  SL  LDL+ N   G++
Sbjct: 536 DCRSLIWLDLNTNLFNGTI 554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  119 bits (300), Expect = 2e-32
 Identities = 54/139 (38%), Positives = 74/139 (53%), Gaps = 1/139 (0%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
            ++L  +   NN   G++PP   N  S L SL L  N   G IPS+L +  +LR++ L L
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +   G IP+E+  V  L  L L  N L GEIP  L N   L  + L NN LT  IP  I 
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG 511

Query: 121 NLSSLSNLDLSVNNLTGSL 139
            L +L+ L LS N+ +G++
Sbjct: 512 RLENLAILKLSNNSFSGNI 530

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  108 bits (273), Expect = 8e-29
 Identities = 44/143 (30%), Positives = 68/143 (47%), Gaps = 4/143 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + SL  +    N   GE+P         L  L L  N F+G +P    +C  L +++LS 
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327

Query: 61  DDFSGTIPKE-IGNVTKLIRLYLRGNQLQGEIPEELGNL-AELEMLWLQNNFLTRAIPSS 118
           ++FSG +P + +  +  L  L L  N+  GE+PE L NL A L  L L +N  +  I  +
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387

Query: 119 IFN--LSSLSNLDLSVNNLTGSL 139
           +     ++L  L L  N  TG +
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKI 410

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  108 bits (273), Expect = 8e-29
 Identities = 51/139 (36%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +S L  ++   N L GE+P      +  LE+L L  N   G+IPS LSNC  L  ISLS 
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  +G IPK IG +  L  L L  N   G IP ELG+   L  L L  N     IP+++F
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559

Query: 121 NLSSLSNLDLSVNNLTGSL 139
             S      ++ N + G  
Sbjct: 560 KQS----GKIAANFIAGKR 574

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  106 bits (268), Expect = 4e-28
 Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 5/140 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
             +L  +  ++N     +P  F    S L+ L +  N   G     +S C  L+ +++S 
Sbjct: 199 CVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSI 119
           + F G IP     +  L  L L  N+  GEIP+ L G    L  L L  N    A+P   
Sbjct: 257 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314

Query: 120 FNLSSLSNLDLSVNNLTGSL 139
            + S L +L LS NN +G L
Sbjct: 315 GSCSLLESLALSSNNFSGEL 334

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  106 bits (267), Expect = 6e-28
 Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 6/142 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTL---SNCKRLRNIS 57
            S L  +  ++NTL      +    L++LE L L  N   G           C  L++++
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184

Query: 58  LSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS 117
           +S +  SG +   +     L  L +  N     IP  LG+ + L+ L +  N L+     
Sbjct: 185 ISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR 241

Query: 118 SIFNLSSLSNLDLSVNNLTGSL 139
           +I   + L  L++S N   G +
Sbjct: 242 AISTCTELKLLNISSNQFVGPI 263

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  104 bits (262), Expect = 3e-27
 Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 1/139 (0%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           M              G         LS      + + ++ G    T  N   +  + +S 
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  SG IPKEIG++  L  L L  N + G IP+E+G+L  L +L L +N L   IP ++ 
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701

Query: 121 NLSSLSNLDLSVNNLTGSL 139
            L+ L+ +DLS NNL+G +
Sbjct: 702 ALTMLTEIDLSNNNLSGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  104 bits (261), Expect = 3e-27
 Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 7/141 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNF--CNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISL 58
           ++SL  +  + N++ G     +   +    L+ L +  N   G +   +S C  L  + +
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDV 207

Query: 59  SLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSS 118
           S ++FS  IP  +G+ + L  L + GN+L G+    +    EL++L + +N     IP  
Sbjct: 208 SSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266

Query: 119 IFNLSSLSNLDLSVNNLTGSL 139
              L SL  L L+ N  TG +
Sbjct: 267 --PLKSLQYLSLAENKFTGEI 285

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.1 bits (240), Expect = 3e-24
 Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 3/139 (2%)

Query: 3   SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNM--FHGKIPSTLSNCKRLRNISLSL 60
              S +   N + G+      N     +      N+  F G     L+        +++ 
Sbjct: 559 FKQSGKIAANFIAGKRYVYIKN-DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
             + G       N   ++ L +  N L G IP+E+G++  L +L L +N ++ +IP  + 
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677

Query: 121 NLSSLSNLDLSVNNLTGSL 139
           +L  L+ LDLS N L G +
Sbjct: 678 DLRGLNILDLSSNKLDGRI 696

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.4 bits (238), Expect = 5e-24
 Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 8/144 (5%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFC-NHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISL 58
            +SL S+  + N+L G +         S L+ L + +N        S       L  + L
Sbjct: 99  SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158

Query: 59  SLDDFSGTIPKEI---GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAI 115
           S +  SG             +L  L + GN++ G++   +     LE L + +N  +  I
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI 216

Query: 116 PSSIFNLSSLSNLDLSVNNLTGSL 139
           P  + + S+L +LD+S N L+G  
Sbjct: 217 P-FLGDCSALQHLDISGNKLSGDF 239

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 94.2 bits (235), Expect = 1e-23
 Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 5/138 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + +L ++    N L GE+P    N  +NL  + L NN   G+IP  +   + L  + LS 
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           + FSG IP E+G+   LI L L  N   G IP  +   +      +  NF+       I 
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIK 579

Query: 121 NLSSLSNLDLSVNNLTGS 138
           N         + N L   
Sbjct: 580 NDGMKKECHGAGNLLEFQ 597

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.9 bits (216), Expect = 4e-21
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 8/134 (5%)

Query: 12  NTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIP--K 69
           N  F  +  +  + L+ LESLFL N+  +G +         L ++ LS +  SG +    
Sbjct: 63  NVGFSAVSSSLLS-LTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLT 120

Query: 70  EIGNVTKLIRLYLRGNQLQGEIP-EELGNLAELEMLWLQNNFLTRAIPSSIF---NLSSL 125
            +G+ + L  L +  N L           L  LE+L L  N ++ A             L
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 180

Query: 126 SNLDLSVNNLTGSL 139
            +L +S N ++G +
Sbjct: 181 KHLAISGNKISGDV 194

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.6 bits (197), Expect = 2e-18
 Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 5/131 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +S+      T+    G   P F N   ++  L +  NM  G IP  + +   L  ++L  
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDN-NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS--- 117
           +D SG+IP E+G++  L  L L  N+L G IP+ +  L  L  + L NN L+  IP    
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725

Query: 118 -SIFNLSSLSN 127
              F  +   N
Sbjct: 726 FETFPPAKFLN 736

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.5 bits (189), Expect = 2e-17
 Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 4/119 (3%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
           + +++++      N+    + S+L +   L ++ LS    +G++         L  L L 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 84  GNQLQGEIPE--ELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGSL 139
            N L G +     LG+ + L+ L + +N L      S    L+SL  LDLS N+++G+ 
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 84.3 bits (209), Expect = 4e-20
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 1/139 (0%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L  + F ++ L      +    L NL  L + +           +    L  + ++ 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
           + F      +I   +  L  L L   QL+   P    +L+ L++L + +N          
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514

Query: 120 FNLSSLSNLDLSVNNLTGS 138
             L+SL  LD S+N++  S
Sbjct: 515 KCLNSLQVLDYSLNHIMTS 533

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 76.2 bits (188), Expect = 2e-17
 Identities = 21/111 (18%), Positives = 41/111 (36%)

Query: 27  SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ 86
            + ++L L  N        +  +   L+ + LS  +          +++ L  L L GN 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 87  LQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137
           +Q         L+ L+ L      L       I +L +L  L+++ N +  
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.8 bits (187), Expect = 3e-17
 Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 2/139 (1%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
             S  ++  + N L      +F +    L+ L L              +   L  + L+ 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA-IPSSI 119
           +            ++ L +L      L       +G+L  L+ L + +N +    +P   
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 120 FNLSSLSNLDLSVNNLTGS 138
            NL++L +LDLS N +   
Sbjct: 146 SNLTNLEHLDLSSNKIQSI 164

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.5 bits (181), Expect = 2e-16
 Identities = 27/141 (19%), Positives = 53/141 (37%), Gaps = 3/141 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKI-PSTLSNCKRLRNISLS 59
           + +L+ +  ++            N LS+LE L +  N F     P   +  + L  + LS
Sbjct: 420 LRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 60  LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
                   P    +++ L  L +  N            L  L++L    N +  +    +
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538

Query: 120 FNL-SSLSNLDLSVNNLTGSL 139
            +  SSL+ L+L+ N+   + 
Sbjct: 539 QHFPSSLAFLNLTQNDFACTC 559

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 69.7 bits (171), Expect = 4e-15
 Identities = 31/144 (21%), Positives = 58/144 (40%), Gaps = 7/144 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +S L ++  T N +       F   LS+L+ L              + + K L+ ++++ 
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 61  DDF-SGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM----LWLQNNFLTRAI 115
           +   S  +P+   N+T L  L L  N++Q     +L  L ++ +    L L  N +   I
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-I 192

Query: 116 PSSIFNLSSLSNLDLSVNNLTGSL 139
               F    L  L L  N  + ++
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNV 216

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 3/141 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +SSL  ++   N+      P+    L NL  L L         P+  ++   L+ +++S 
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAE-LEMLWLQNNFLTRAIPSSI 119
           ++F          +  L  L    N +     +EL +    L  L L  N          
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 563

Query: 120 F--NLSSLSNLDLSVNNLTGS 138
           F   +     L + V  +  +
Sbjct: 564 FLQWIKDQRQLLVEVERMECA 584

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 65.0 bits (159), Expect = 2e-13
 Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 7/143 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNM--FHGKIPSTLSNCKRLRNISL 58
           + SL  + FT+N             L +LE L L  N   F G    +      L+ + L
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEV---DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 59  SLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPS 117
           S +    T+      + +L  L  + + L+         +L  L  L + +     A   
Sbjct: 381 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 118 SIFNLSSLSNLDLSVNNLTGSLC 140
               LSSL  L ++ N+   +  
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFL 462

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.0 bits (146), Expect = 1e-11
 Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 8/144 (5%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG-KIPSTLSNCKRLRNISLS 59
           +SSL  +      L   L      HL  L+ L + +N+    K+P   SN   L ++ LS
Sbjct: 99  LSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 60  LDDFSGTIPKEIGNVTKL----IRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAI 115
            +        ++  + ++    + L L  N +    P     +  L  L L+NNF +  +
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNV 216

Query: 116 PSSIF-NLSSLSNLDLSVNNLTGS 138
             +    L+ L    L +      
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNE 240

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 2/97 (2%)

Query: 42  KIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAEL 101
           KIP  L      +N+ LS +           +  +L  L L   ++Q        +L+ L
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 102 EMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS 138
             L L  N +      +   LSSL  L     NL   
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 31/143 (21%), Positives = 54/143 (37%), Gaps = 7/143 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + +L  +   +N +     P + ++L+NLE L L +N       + L    ++  ++LSL
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182

Query: 61  D---DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAI- 115
           D   +    I        +L +L LR N     + +  +  LA LE+  L          
Sbjct: 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 116 --PSSIFNLSSLSNLDLSVNNLT 136
                   L  L NL +    L 
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLA 265

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 24/140 (17%), Positives = 38/140 (27%), Gaps = 10/140 (7%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFL---KNNMFHGKIPSTLSNCKRLRNISL 58
             L+   F N     +   +    L NL          + +   I    +    + + SL
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 59  SLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSS 118
                                L L   +       +L +L  L     +          S
Sbjct: 290 VSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFS 342

Query: 119 IFNLSSLSNLDLSVNNLTGS 138
             +L SL  LDLS N L+  
Sbjct: 343 EVDLPSLEFLDLSRNGLSFK 362

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 81.6 bits (202), Expect = 3e-19
 Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 1/136 (0%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
           +++  +  T+N L      NF    S L SL +  N      P        L+ ++L  +
Sbjct: 25  TNITVLNLTHNQLRRLPAANF-TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 62  DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN 121
           + S    K     T L  L+L  N +Q            L  L L +N L+     +   
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 122 LSSLSNLDLSVNNLTG 137
           L +L  L LS N +  
Sbjct: 144 LENLQELLLSNNKIQA 159

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.3 bits (191), Expect = 9e-18
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 6/142 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
            ++L  +   +N++   +  N      NL +L L +N        T    + L+ + LS 
Sbjct: 96  CTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154

Query: 61  DDFSGTIPKEIGNV--TKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSS 118
           +       +E+     + L +L L  NQ++   P     +  L  L+L N  L  ++   
Sbjct: 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

Query: 119 IF---NLSSLSNLDLSVNNLTG 137
           +      +S+ NL LS + L+ 
Sbjct: 215 LCLELANTSIRNLSLSNSQLST 236

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.0 bits (190), Expect = 1e-17
 Identities = 35/142 (24%), Positives = 52/142 (36%), Gaps = 3/142 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L  +   +N L  +L        +NL  L L +N       +     K L  + LS 
Sbjct: 72  LPMLKVLNLQHNEL-SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 130

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLA--ELEMLWLQNNFLTRAIPSS 118
           +  S T       +  L  L L  N++Q    EEL   A   L+ L L +N +    P  
Sbjct: 131 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190

Query: 119 IFNLSSLSNLDLSVNNLTGSLC 140
              +  L  L L+   L  SL 
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLT 212

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.8 bits (187), Expect = 3e-17
 Identities = 34/146 (23%), Positives = 51/146 (34%), Gaps = 9/146 (6%)

Query: 1   MSSLLSIRFTNNTLFG-ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS 59
           + SL  +      L   +  P+    L NL  L L NN         L   ++L  + L 
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512

Query: 60  --------LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFL 111
                        G     +  ++ L  L L  N       E   +L EL+++ L  N L
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL 572

Query: 112 TRAIPSSIFNLSSLSNLDLSVNNLTG 137
                S   N  SL +L+L  N +T 
Sbjct: 573 NTLPASVFNNQVSLKSLNLQKNLITS 598

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.4 bits (186), Expect = 5e-17
 Identities = 23/112 (20%), Positives = 44/112 (39%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
            +N+  L L +N       +  +   +L ++ +  +  S   P+    +  L  L L+ N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137
           +L     +       L  L L +N + +   +      +L  LDLS N L+ 
Sbjct: 84  ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.7 bits (184), Expect = 8e-17
 Identities = 38/139 (27%), Positives = 51/139 (36%), Gaps = 3/139 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
            S L S+    NT+  +L P  C  L  L+ L L++N        T + C  L  + L  
Sbjct: 48  YSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS--S 118
           +               LI L L  N L          L  L+ L L NN +         
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 166

Query: 119 IFNLSSLSNLDLSVNNLTG 137
           IF  SSL  L+LS N +  
Sbjct: 167 IFANSSLKKLELSSNQIKE 185

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.5 bits (181), Expect = 2e-16
 Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 10/147 (6%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L  +    N +  EL       L N+  ++L  N +     ++ +    L+ + L  
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463

Query: 61  DDFSG--TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR----- 113
                  + P     +  L  L L  N +     + L  L +LE+L LQ+N L R     
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523

Query: 114 ---AIPSSIFNLSSLSNLDLSVNNLTG 137
                   +  LS L  L+L  N    
Sbjct: 524 NPGGPIYFLKGLSHLHILNLESNGFDE 550

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 6/143 (4%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLS---NCKRLRNISL 58
           SSL  +  ++N +     P   + +  L  LFL N      +   L        +RN+SL
Sbjct: 171 SSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229

Query: 59  SLDDFSGTIPKEIGN--VTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
           S    S T          T L  L L  N L     +    L +LE  +L+ N +     
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289

Query: 117 SSIFNLSSLSNLDLSVNNLTGSL 139
            S+  L ++  L+L  +    S+
Sbjct: 290 HSLHGLFNVRYLNLKRSFTKQSI 312

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.9 bits (169), Expect = 8e-15
 Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 5/142 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +    + +  +     ++       L  LE L +++N   G   +  +    L+ +SLS 
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362

Query: 61  DDFSGTIPKEIG----NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
              S              + L  L L  N++     +    L  LE+L L  N + + + 
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

Query: 117 SSIF-NLSSLSNLDLSVNNLTG 137
              +  L ++  + LS N    
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQ 444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.9 bits (169), Expect = 9e-15
 Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 10/147 (6%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNM--------FHGKIPSTLSNCKR 52
           + +L  +  +NN +   +  +    L  LE L L++N           G     L     
Sbjct: 479 LRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537

Query: 53  LRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLT 112
           L  ++L  + F     +   ++ +L  + L  N L         N   L+ L LQ N +T
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597

Query: 113 RAIPSSIF-NLSSLSNLDLSVNNLTGS 138
                       +L+ LD+  N    +
Sbjct: 598 SVEKKVFGPAFRNLTELDMRFNPFDCT 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 67.3 bits (165), Expect = 3e-14
 Identities = 24/148 (16%), Positives = 50/148 (33%), Gaps = 10/148 (6%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCN-HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS 59
            +S+ ++  +N+ L       F     +NL  L L  N  +     + +   +L    L 
Sbjct: 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280

Query: 60  LDDFSGTIPKEIGNVTKLIRLYLRGN---------QLQGEIPEELGNLAELEMLWLQNNF 110
            ++        +  +  +  L L+ +          L          L  LE L +++N 
Sbjct: 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340

Query: 111 LTRAIPSSIFNLSSLSNLDLSVNNLTGS 138
           +     +    L +L  L LS +  +  
Sbjct: 341 IPGIKSNMFTGLINLKYLSLSNSFTSLR 368

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 6e-11
 Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 14/152 (9%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKI---------PSTLSNCK 51
           +  L       N +      +    L N+  L LK +     I           +    K
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHG-LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329

Query: 52  RLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELG----NLAELEMLWLQ 107
            L ++++  +D  G        +  L  L L  +                 + L +L L 
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389

Query: 108 NNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL 139
            N +++    +   L  L  LDL +N +   L
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 8/147 (5%)

Query: 1   MSSLLSIRFTNNTL-------FGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRL 53
           +  L  +   +N L           P  F   LS+L  L L++N F         +   L
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562

Query: 54  RNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELG-NLAELEMLWLQNNFLT 112
           + I L L++ +        N   L  L L+ N +     +  G     L  L ++ N   
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

Query: 113 RAIPSSIFNLSSLSNLDLSVNNLTGSL 139
               S  + ++ ++    ++  L+   
Sbjct: 623 CTCESIAWFVNWINETHTNIPELSSHY 649

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.7 bits (184), Expect = 8e-17
 Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 8/144 (5%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG----KIPSTLSNCKRLRNI 56
              +  +        G +P      L+ LE L L ++          P  +S        
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138

Query: 57  SLSLDDFSGTIPKEIG--NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA 114
                 +  T        + + LI+  +  +  Q  I +      +   +   +N +T  
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-F 197

Query: 115 IPSSIFNLSSLSNLDLSVNNLTGS 138
           +  ++  L+ L    +  +     
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAE 221

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.5 bits (181), Expect = 2e-16
 Identities = 31/153 (20%), Positives = 50/153 (32%), Gaps = 18/153 (11%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLS--NCKRLRNISL 58
              L S+    N    E+P NFC     +E+L   +N     IP+     +   +  I  
Sbjct: 352 EIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDF 409

Query: 59  S-------LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFL 111
           S              +         +  + L  NQ+     E     + L  + L  N L
Sbjct: 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469

Query: 112 T-------RAIPSSIFNLSSLSNLDLSVNNLTG 137
           T       +    +  N   L+++DL  N LT 
Sbjct: 470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.5 bits (181), Expect = 2e-16
 Identities = 17/148 (11%), Positives = 49/148 (33%), Gaps = 15/148 (10%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           ++ L      N+    E       + +       +    +        N K L ++ +  
Sbjct: 205 LTKLRQFYMGNSPFVAENICEAWENEN------SEYAQQYKTEDLKWDNLKDLTDVEVYN 258

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQL--------QGEIPEELGNLAELEMLWLQNNFLT 112
                 +P  +  + ++  + +  N+           +   +     +++++++  N L 
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318

Query: 113 R-AIPSSIFNLSSLSNLDLSVNNLTGSL 139
              + +S+  +  L  L+   N L G L
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKL 346

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.8 bits (179), Expect = 4e-16
 Identities = 17/145 (11%), Positives = 41/145 (28%), Gaps = 15/145 (10%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
                 I   +N +   +       L+ L   ++ N+ F  +        +         
Sbjct: 182 TLKDTQIGQLSNNI-TFVSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQY- 238

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA------ 114
                T   +  N+  L  + +       ++P  L  L E++++ +  N           
Sbjct: 239 ----KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD 294

Query: 115 --IPSSIFNLSSLSNLDLSVNNLTG 137
               +       +  + +  NNL  
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKT 319

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.5 bits (173), Expect = 2e-15
 Identities = 32/160 (20%), Positives = 52/160 (32%), Gaps = 23/160 (14%)

Query: 1   MSSLLSIRFTNNTL-------FGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRL 53
           +S + +I F+ N +       F  L P       N+ S+ L NN          S    L
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK-GINVSSINLSNNQISKFPKELFSTGSPL 459

Query: 54  RNISLS-------LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPE-ELGNLAELEMLW 105
            +I+L          +      +   N   L  + LR N+L     +     L  L  + 
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519

Query: 106 LQNNFLTRAIPSSIFNLSSL------SNLDLSVNNLTGSL 139
           L  N  ++  P+   N S+L      +  D   N      
Sbjct: 520 LSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.1 bits (172), Expect = 4e-15
 Identities = 28/171 (16%), Positives = 52/171 (30%), Gaps = 36/171 (21%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMF--------------------- 39
           +  L  +   N     +LP      L  ++ + +  N                       
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 40  ------------HGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQL 87
                          + ++L   K+L  +    +   G +P   G+  KL  L L  NQ+
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI 365

Query: 88  QGEIPEELGNLAELEMLWLQNNFLTR-AIPSSIFNLSSLSNLDLSVNNLTG 137
                   G   ++E L   +N L          ++S +S +D S N +  
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS 416

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.6 bits (163), Expect = 5e-14
 Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 6/130 (4%)

Query: 14  LFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSG----TIPK 69
           ++G  P    N    +  L L+     G++P  +     L  ++L             PK
Sbjct: 68  MWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPK 127

Query: 70  EIGNVTKLIRLYLRGNQLQGEIPEELGNLA--ELEMLWLQNNFLTRAIPSSIFNLSSLSN 127
            I       +        Q    +        +L    + ++   ++I  S       + 
Sbjct: 128 GISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ 187

Query: 128 LDLSVNNLTG 137
           +    NN+T 
Sbjct: 188 IGQLSNNITF 197

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 23/147 (15%), Positives = 55/147 (37%), Gaps = 11/147 (7%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
              +  I    N L           +  L  L    N   GK+P+   +  +L +++L+ 
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAY 362

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPE--ELGNLAELEMLWLQNNFLT------ 112
           +  +       G   ++  L    N+L+  IP   +  +++ +  +    N +       
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 113 -RAIPSSIFNLSSLSNLDLSVNNLTGS 138
              +  + F   ++S+++LS N ++  
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKF 448

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 23/142 (16%), Positives = 42/142 (29%), Gaps = 10/142 (7%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLR------ 54
              L SI    N L           L  L  + L  N F    P+   N   L+      
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545

Query: 55  NISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA 114
                 +      P+ I     L +L +  N ++  + E++     + +L +++N     
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISI 602

Query: 115 IPSSIFNLSSLSNLDLSVNNLT 136
             S +          L  +   
Sbjct: 603 DLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 8e-13
 Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 12/131 (9%)

Query: 14  LFGELPPNFCNHLSNLESLFLKNNMFHGKIPS-TLSNCKRLRNISLSLDDFSGTIPKEIG 72
              +   NF N    L S+ L+ N           +    L  I LS + FS   P +  
Sbjct: 476 SLKDENENFKN-TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL 533

Query: 73  NVTKLIRLYLR------GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLS 126
           N + L    +R      GN+   E PE +     L  L + +N +   +   I    ++S
Sbjct: 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNIS 590

Query: 127 NLDLSVNNLTG 137
            LD+  N    
Sbjct: 591 VLDIKDNPNIS 601

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 19/109 (17%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 37  NMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQG----EIP 92
           +M+  +   +L++  R+  +SL     SG +P  IG +T+L  L L  +  +       P
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 93  EELGNLAELEMLWLQNNFLTRAIPSSIF--NLSSLSNLDLSVNNLTGSL 139
           + +      E          +         + S L    ++ +    S+
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 4/88 (4%)

Query: 55  NISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLT-- 112
           N +  LD +       + +  ++  L L G    G +P+ +G L ELE+L L ++     
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 113 --RAIPSSIFNLSSLSNLDLSVNNLTGS 138
                P  I    S         +   +
Sbjct: 121 ERLFGPKGISANMSDEQKQKMRMHYQKT 148

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 73.4 bits (180), Expect = 2e-16
 Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 31/163 (19%)

Query: 3   SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG-------------------KI 43
               I    N +   +       L+ L+ ++  N+ F                       
Sbjct: 426 KDTQIGNLTNRI-TFISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE 483

Query: 44  PSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQG---------EIPEE 94
             + SN K L ++ L        +P  + ++ +L  L +  N+             + ++
Sbjct: 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

Query: 95  LGNLAELEMLWLQNNFLTRAIPS-SIFNLSSLSNLDLSVNNLT 136
                ++++ ++  N L     S S+  +  L  LD   N + 
Sbjct: 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 72.6 bits (178), Expect = 5e-16
 Identities = 25/148 (16%), Positives = 46/148 (31%), Gaps = 15/148 (10%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG---------KIPSTLSNCK 51
           +  L  +   N     +LP    + L  L+SL +  N             ++        
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 52  RLRNISLSLDDFSG-TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNF 110
           +++   +  ++         +  + KL  L    N++     E  G   +L  L L  N 
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQ 606

Query: 111 LTRAIPSSIF-NLSSLSNLDLSVNNLTG 137
           +   IP         +  L  S N L  
Sbjct: 607 IE-EIPEDFCAFTDQVEGLGFSHNKLKY 633

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.1 bits (169), Expect = 7e-15
 Identities = 21/137 (15%), Positives = 43/137 (31%), Gaps = 7/137 (5%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +S LL      N     +  +    L + +   L N +    I   +    +L+ I  + 
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI--TFISKAIQRLTKLQIIYFAN 457

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
             F+                     +          NL +L  + L N      +P  ++
Sbjct: 458 SPFTYDNIAVD-----WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512

Query: 121 NLSSLSNLDLSVNNLTG 137
           +L  L +L+++ N    
Sbjct: 513 DLPELQSLNIACNRGIS 529

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.7 bits (168), Expect = 1e-14
 Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 16/151 (10%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPST--LSNCKRLRNISL 58
              L  ++   N    E+P +FC     +E L   +N     IP+     +   + ++  
Sbjct: 594 NVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDF 651

Query: 59  SLDDFSGTIPK-----EIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLT- 112
           S +             +         + L  N++Q    E     + +  + L NN +T 
Sbjct: 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS 711

Query: 113 ------RAIPSSIFNLSSLSNLDLSVNNLTG 137
                 +    +  N   L+ +DL  N LT 
Sbjct: 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.4 bits (162), Expect = 7e-14
 Identities = 26/158 (16%), Positives = 48/158 (30%), Gaps = 21/158 (13%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCN----HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNI 56
           +  + S+ F+ N +  E     C+       N  ++ L  N          +    +  I
Sbjct: 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702

Query: 57  SLS-------LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEEL--GNLAELEMLWLQ 107
            LS        ++          N   L  + LR N+L   + ++     L  L  + + 
Sbjct: 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVS 761

Query: 108 NNFLTRAIPSSIFNLSSL------SNLDLSVNNLTGSL 139
            N  +   P+   N S L         D   N +    
Sbjct: 762 YNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.7 bits (160), Expect = 1e-13
 Identities = 23/152 (15%), Positives = 51/152 (33%), Gaps = 18/152 (11%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMF-------HGKIPSTLSNCKRL 53
             +  ++  + N +    P       S + ++ L NN+                 N   L
Sbjct: 672 GINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

Query: 54  RNISLSLDDFSGTIPKEI--GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQ---- 107
             I L  +  + ++  +     +  L  + +  N      P +  N ++L+   ++    
Sbjct: 731 TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRD 788

Query: 108 --NNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137
              N + R  P+ I    SL  L +  N++  
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.8 bits (150), Expect = 3e-12
 Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 10/142 (7%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLR------ 54
              L +I    N L           L  L ++ +  N F    P+   N  +L+      
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785

Query: 55  NISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA 114
                 +      P  I     LI+L +  N ++ ++ E+L    +L +L + +N     
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISI 842

Query: 115 IPSSIFNLSSLSNLDLSVNNLT 136
             +S+          L  +   
Sbjct: 843 DVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.0 bits (148), Expect = 5e-12
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 12/130 (9%)

Query: 14  LFGELPPNFCNHLSNLESLFLKNNMFHGKIPS-TLSNCKRLRNISLSLDDFSGTIPKEIG 72
                  N+ N    L ++ L+ N           +    L N+ +S + FS + P +  
Sbjct: 716 SLKPKDGNYKN-TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPL 773

Query: 73  NVTKLIRLYLR------GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLS 126
           N ++L    +R      GN++  + P  +     L  L + +N + + +   +     L 
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLY 830

Query: 127 NLDLSVNNLT 136
            LD++ N   
Sbjct: 831 ILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 4e-11
 Identities = 20/141 (14%), Positives = 37/141 (26%), Gaps = 9/141 (6%)

Query: 3   SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG----KIPSTLSNCKRLRNISL 58
           +        + +       F ++   L    L  +  +     K     S          
Sbjct: 372 TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG 431

Query: 59  SLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSS 118
           +L +    I K I  +TKL  +Y   +    +           E               S
Sbjct: 432 NLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD-----WEDANSDYAKQYENEELS 486

Query: 119 IFNLSSLSNLDLSVNNLTGSL 139
             NL  L++++L        L
Sbjct: 487 WSNLKDLTDVELYNCPNMTQL 507

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 8e-10
 Identities = 17/145 (11%), Positives = 42/145 (28%), Gaps = 10/145 (6%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-------STLSNCKRL 53
              +  +        G +P      L+ L+ L    +              +   + +R 
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 54  RNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR 113
             I +          + +     L     R  +++    +   +L + ++  L N     
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI--T 438

Query: 114 AIPSSIFNLSSLSNLDLSVNNLTGS 138
            I  +I  L+ L  +  + +  T  
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYD 463

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 1e-09
 Identities = 15/85 (17%), Positives = 33/85 (38%)

Query: 55  NISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA 114
           N +  LD +      ++ N  ++  L L G   +G +P+ +G L EL++L    +  T +
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 115 IPSSIFNLSSLSNLDLSVNNLTGSL 139
                    +    +   + +    
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHY 387

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 1/104 (0%)

Query: 37  NMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELG 96
           +M+  +    L N  R+  +SL+     G +P  IG +T+L  L    +           
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 97  NLAELEMLWLQNNFLTRAIPS-SIFNLSSLSNLDLSVNNLTGSL 139
                +M   + + +        +     L+  DL  + +  + 
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP 412

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.4 bits (178), Expect = 6e-16
 Identities = 30/138 (21%), Positives = 47/138 (34%), Gaps = 1/138 (0%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L  + F ++TL      +    L  L  L +                  L  + ++ 
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
           + F       +  N T L  L L   QL+         L  L++L + +N L     S  
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517

Query: 120 FNLSSLSNLDLSVNNLTG 137
             L SLS LD S N +  
Sbjct: 518 NQLYSLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.4 bits (165), Expect = 3e-14
 Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 2/137 (1%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
           SS  +I  + N L      +F N  S L+ L L                  L N+ L+ +
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSN-FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 62  DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF- 120
                 P     +T L  L     +L       +G L  L+ L + +NF+      + F 
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 121 NLSSLSNLDLSVNNLTG 137
           NL++L ++DLS N +  
Sbjct: 151 NLTNLVHVDLSYNYIQT 167

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.6 bits (163), Expect = 6e-14
 Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 2/137 (1%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPS-TLSNCKRLRNISLS 59
           +  LL +  +               L++L +L +  N F     S   +N   L  + LS
Sbjct: 423 LEKLLYLDISYTNT-KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481

Query: 60  LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
                         + +L  L +  N L          L  L  L    N +  +     
Sbjct: 482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541

Query: 120 FNLSSLSNLDLSVNNLT 136
               SL+  +L+ N++ 
Sbjct: 542 HFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.8 bits (148), Expect = 5e-12
 Identities = 27/144 (18%), Positives = 53/144 (36%), Gaps = 7/144 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L ++  T N +     P   + L++LE+L              +     L+ ++++ 
Sbjct: 79  LHHLSNLILTGNPI-QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137

Query: 61  DDFSG-TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM----LWLQNNFLTRAI 115
           +      +P    N+T L+ + L  N +Q     +L  L E       L +  N +   I
Sbjct: 138 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-I 196

Query: 116 PSSIFNLSSLSNLDLSVNNLTGSL 139
               F    L  L L  N  + ++
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNI 220

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 8e-11
 Identities = 23/142 (16%), Positives = 45/142 (31%), Gaps = 5/142 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L S+  T N     +       L +L  L L  N        + S+        L L
Sbjct: 327 LPFLKSLTLTMNKG--SISFKKVA-LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 61  DD-FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSS 118
               +  +      + +L  L  + + L+         +L +L  L +            
Sbjct: 384 SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443

Query: 119 IFNLSSLSNLDLSVNNLTGSLC 140
              L+SL+ L ++ N+   +  
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTL 465

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 5/143 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + +L  +   +N +     P + ++L+NL  + L  N       + L   +    ++LSL
Sbjct: 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186

Query: 61  DDFS---GTIPKEIGNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIP 116
           D        I  +     KL  L LRGN     I +  L NLA L +  L          
Sbjct: 187 DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246

Query: 117 SSIFNLSSLSNL-DLSVNNLTGS 138
             IF  S +  L D++++    +
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLT 269

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 31/158 (19%), Positives = 49/158 (31%), Gaps = 24/158 (15%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFC------------------NHLSNLESLFLKNNMFHGK 42
           ++++ ++     ++                             L  L+SL L  N   G 
Sbjct: 284 LANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMN--KGS 341

Query: 43  IPSTLSNCKRLRNISLSLDDFSGTIPK--EIGNVTKLIRLYLRGNQLQGEIPEELGNLAE 100
           I         L  + LS +  S +            L  L L  N     +      L E
Sbjct: 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEE 400

Query: 101 LEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTG 137
           L+ L  Q++ L R    S F +L  L  LD+S  N   
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 12/135 (8%), Positives = 29/135 (21%), Gaps = 18/135 (13%)

Query: 3   SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62
            L  +    N     +      +L+ L    L    F  +    +     +  +      
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD---- 260

Query: 63  FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNL 122
                         +    L       +   +   LA +  + L    +       +   
Sbjct: 261 ------------VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKH 306

Query: 123 SSLSNLDLSVNNLTG 137
               +L +    L  
Sbjct: 307 FKWQSLSIIRCQLKQ 321

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 29/141 (20%), Positives = 46/141 (32%), Gaps = 9/141 (6%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNL--ESLFLKNNMFHGKIPSTLSNCKRLRNISLS 59
             L+   F +        P+    L ++  +   L                  +  +SL+
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293

Query: 60  LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
                    +++    K   L +   QL+     +L  L  L    L  N  +  I    
Sbjct: 294 GVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT---LTMNKGS--ISFKK 346

Query: 120 FNLSSLSNLDLSVNNLTGSLC 140
             L SLS LDLS N L+ S C
Sbjct: 347 VALPSLSYLDLSRNALSFSGC 367

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.1 bits (175), Expect = 9e-16
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 2/126 (1%)

Query: 11  NNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKE 70
             T    LP +  N L NL+SL ++N+     +   + +  +L  + L         P  
Sbjct: 191 EWTGIRSLPASIAN-LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 71  IGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDL 130
            G    L RL L+       +P ++  L +LE L L+       +PS I  L +   + +
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308

Query: 131 SVNNLT 136
             +   
Sbjct: 309 PPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 68.0 bits (167), Expect = 1e-14
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 4/116 (3%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS-GTIPKEIGNVTKLIRLYLR 83
           + +N +                L +  +   ++L L        P +   ++ L  + + 
Sbjct: 54  NSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTID 112

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL 139
              L  E+P+ +   A LE L L  N L  A+P+SI +L+ L  L +        L
Sbjct: 113 AAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL 166

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.8 bits (156), Expect = 4e-13
 Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 13/129 (10%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTK 76
           + P      LS+L+ + +       ++P T+     L  ++L+ +     +P  I ++ +
Sbjct: 95  QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNR 151

Query: 77  LIRLYLRGNQLQGEIPEELGN---------LAELEMLWLQNNFLTRAIPSSIFNLSSLSN 127
           L  L +R      E+PE L +         L  L+ L L+   +  ++P+SI NL +L +
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS 210

Query: 128 LDLSVNNLT 136
           L +  + L+
Sbjct: 211 LKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.6 bits (140), Expect = 5e-11
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 2/116 (1%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + +L S++  N+ L   L P   + L  LE L L+        P        L+ + L  
Sbjct: 205 LQNLKSLKIRNSPLS-ALGPAIHH-LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
                T+P +I  +T+L +L LRG      +P  +  L    ++ +  +   +   
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 23/136 (16%), Positives = 44/136 (32%), Gaps = 23/136 (16%)

Query: 22  FCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPK------------ 69
             +H S  E+L+ + +         LS  +R  N   +    +                 
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 70  ---------EIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
                    E       + L LR   L  + P++   L+ L+ + +    L   +P ++ 
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQ 124

Query: 121 NLSSLSNLDLSVNNLT 136
             + L  L L+ N L 
Sbjct: 125 QFAGLETLTLARNPLR 140

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 1/98 (1%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L  +     T     PP F    + L+ L LK+      +P  +    +L  + L  
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNL 98
                 +P  I  +     + +  +             
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.4 bits (173), Expect = 2e-15
 Identities = 28/136 (20%), Positives = 44/136 (32%), Gaps = 1/136 (0%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
           +S   + F+ N L       F   L NL  L L     +     T  +  RL  + L+ +
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 62  DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN 121
                    +     L  L+     +       L N   LE L+L +N ++       F 
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151

Query: 122 LSSLSNLDLSVNNLTG 137
              L  LD   N +  
Sbjct: 152 TEKLKVLDFQNNAIHY 167

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 1/134 (0%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + +L  +  T   +   +  +       L++L L  N       + LS  K L+++    
Sbjct: 56  LINLTFLDLTRCQI-YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
              S      + N   L  LYL  N +      +     +L++L  QNN +       + 
Sbjct: 115 TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174

Query: 121 NLSSLSNLDLSVNN 134
           +L   +NL L++N 
Sbjct: 175 SLQQATNLSLNLNG 188

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.2 bits (162), Expect = 7e-14
 Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 5/141 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKI---PSTLSNCKRLRNIS 57
           +  L  +  +++ L         + L  L+ L L+ N F        ++L    RL  + 
Sbjct: 424 LHLLKVLNLSHSLL-DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482

Query: 58  LSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS 117
           LS  D S        ++  +  + L  N+L     E L +L  +  L L +N ++  +PS
Sbjct: 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541

Query: 118 SIFNLSSLSNLDLSVNNLTGS 138
            +  LS    ++L  N L  +
Sbjct: 542 LLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.2 bits (162), Expect = 7e-14
 Identities = 21/140 (15%), Positives = 51/140 (36%), Gaps = 4/140 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS- 59
              L  +      L  +   +   +L  L+ L L +++              L++++L  
Sbjct: 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458

Query: 60  --LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS 117
                 +      +  + +L  L L    L         +L  +  + L +N LT +   
Sbjct: 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

Query: 118 SIFNLSSLSNLDLSVNNLTG 137
           ++ +L  +  L+L+ N+++ 
Sbjct: 519 ALSHLKGIY-LNLASNHISI 537

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.2 bits (162), Expect = 8e-14
 Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 5/141 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPS-TLSNCKRLRNISLS 59
           +S+L  +  + N  F  L     ++  +L  L +K N    ++ +  L N + LR + LS
Sbjct: 300 LSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS 358

Query: 60  LDD--FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS 117
            DD   S     ++ N++ L  L L  N+      E      +LE+L L    L      
Sbjct: 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ 418

Query: 118 SIF-NLSSLSNLDLSVNNLTG 137
           S F NL  L  L+LS + L  
Sbjct: 419 SPFQNLHLLKVLNLSHSLLDI 439

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.2 bits (162), Expect = 8e-14
 Identities = 20/112 (17%), Positives = 38/112 (33%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
            ++ E L    N+      +T S    L  + L+             +  +L  L L  N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137
            L       L     L+ L+     ++      + N  +L +L L  N+++ 
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 4/142 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
              L ++  T N L   +     +    L+ LF             L N K L ++ L  
Sbjct: 80  QHRLDTLVLTANPL-IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS 138

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM--LWLQNNFLTRAIPSS 118
           +  S     +     KL  L  + N +     E++ +L +     L L  N +   I   
Sbjct: 139 NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPG 197

Query: 119 IFNLSSLSNLDLSVNNLTGSLC 140
            F+ +   +L+         + 
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIF 219

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.1 bits (154), Expect = 9e-13
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 3/140 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCN-HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS 59
           + SL    F +       P  F      ++ES+ L+ + F     +T      L+ + L+
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286

Query: 60  LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
               S  +P  +  ++ L +L L  N+ +        N   L  L ++ N     + +  
Sbjct: 287 ATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

Query: 120 F-NLSSLSNLDLSVNNLTGS 138
             NL +L  LDLS +++  S
Sbjct: 346 LENLENLRELDLSHDDIETS 365

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.8 bits (148), Expect = 6e-12
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 4/142 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCN-HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS 59
            +   S+ F        +     N  + +L     ++       P+       +   S++
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260

Query: 60  LDD--FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS 117
           L    F           + L  L L    L  E+P  L  L+ L+ L L  N        
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI 319

Query: 118 SIFNLSSLSNLDLSVNNLTGSL 139
           S  N  SL++L +  N     L
Sbjct: 320 SASNFPSLTHLSIKGNTKRLEL 341

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 6e-10
 Identities = 19/139 (13%), Positives = 43/139 (30%), Gaps = 4/139 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
             +L  + F    +   +     ++   LESL+L +N             ++L+ +    
Sbjct: 104 PKALKHLFFIQTGI-SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 162

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQ-GEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
           +       +++ ++ +   L L  N      I     + A  + L          I   +
Sbjct: 163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222

Query: 120 FN--LSSLSNLDLSVNNLT 136
            N  + SL        +  
Sbjct: 223 KNSTIQSLWLGTFEDMDDE 241

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.7 bits (150), Expect = 2e-12
 Identities = 30/140 (21%), Positives = 54/140 (38%), Gaps = 3/140 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L  + F ++ L      +    L NL  L + +           +    L  + ++ 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
           + F      +I   +  L  L L   QL+   P    +L+ L++L + +N L   +P  I
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGI 513

Query: 120 F-NLSSLSNLDLSVNNLTGS 138
           F  L+SL  + L  N    S
Sbjct: 514 FDRLTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.9 bits (148), Expect = 6e-12
 Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 2/136 (1%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
            S  ++  + N L   L          L+ L L              +   L  + L+ +
Sbjct: 28  FSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 62  DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF- 120
                       ++ L +L      L       +G+L  L+ L + +N +        F 
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 121 NLSSLSNLDLSVNNLT 136
           NL++L +LDLS N + 
Sbjct: 147 NLTNLEHLDLSSNKIQ 162

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 6/141 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
              L  +  +   +   +       LS+L +L L  N          S    L+ +    
Sbjct: 51  FPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQ-GEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
            + +      IG++  L  L +  N +Q  ++PE   NL  LE L L +N +     + +
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 120 FNLSSLSN----LDLSVNNLT 136
             L  +      LDLS+N + 
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMN 190

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 31/144 (21%), Positives = 59/144 (40%), Gaps = 7/144 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +S L ++  T N +   L     + LS+L+ L              + + K L+ ++++ 
Sbjct: 75  LSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 61  DDF-SGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM----LWLQNNFLTRAI 115
           +   S  +P+   N+T L  L L  N++Q     +L  L ++ +    L L  N +   I
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-I 192

Query: 116 PSSIFNLSSLSNLDLSVNNLTGSL 139
               F    L  L L  N  + ++
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNV 216

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 4/118 (3%)

Query: 25  HLSNLESLFLKNNMFH--GKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL 82
            L +LE L L  N     G    +      L+ + LS +    T+      + +L  L  
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 403

Query: 83  RGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL 139
           + + L+         +L  L  L + +     A       LSSL  L ++ N+   + 
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 8/144 (5%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMF-HGKIPSTLSNCKRLRNISLS 59
           +SSL  +      L   L      HL  L+ L + +N+    K+P   SN   L ++ LS
Sbjct: 99  LSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 60  LDDFSGTIPKEIGNVTKL----IRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAI 115
            +        ++  + ++    + L L  N +   I         L  L L+NNF +  +
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNV 216

Query: 116 PSSIF-NLSSLSNLDLSVNNLTGS 138
             +    L+ L    L +      
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNE 240

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.2 bits (144), Expect = 1e-11
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 4/138 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           ++ L  +  ++N     + P   + L  L +L L         P        L+ + L  
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
           +     +P +   ++  L  L+L GN++          L  L+ L L  N +   +    
Sbjct: 139 NALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHA 196

Query: 120 F-NLSSLSNLDLSVNNLT 136
           F +L  L  L L  NNL+
Sbjct: 197 FRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 5/129 (3%)

Query: 11  NNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKE 70
           +      +P        NL  L+L +N+      +  +    L  + LS +    ++   
Sbjct: 40  HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA 99

Query: 71  I-GNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSN 127
               + +L  L+L    LQ E+       LA L+ L+LQ+N L   +P   F +L +L++
Sbjct: 100 TFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTH 157

Query: 128 LDLSVNNLT 136
           L L  N ++
Sbjct: 158 LFLHGNRIS 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.8 bits (130), Expect = 9e-10
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 3/136 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L ++      L  EL P     L+ L+ L+L++N        T  +   L ++ L  
Sbjct: 104 LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  S    +    +  L RL L  N++    P    +L  L  L+L  N L+ A+P+   
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEAL 221

Query: 121 -NLSSLSNLDLSVNNL 135
             L +L  L L+ N  
Sbjct: 222 APLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 3/95 (3%)

Query: 43  IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELE 102
           +P  +      + I L  +  S            L  L+L  N L          LA LE
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 103 MLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLT 136
            L L +N   R++  + F  L  L  L L    L 
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 75  TKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVN 133
               R++L GN++             L +LWL +N L R I ++ F  L+ L  LDLS N
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSDN 90

Query: 134 NLTGSL 139
               S+
Sbjct: 91  AQLRSV 96

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.0 bits (143), Expect = 2e-11
 Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 3/137 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +S+L  +  + N +   L       L NL+SL + +N          S    L  ++L  
Sbjct: 103 LSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
            + + +IP E   ++  LI L LR   +          L  L++L + +      +  + 
Sbjct: 162 CNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 120 FNLSSLSNLDLSVNNLT 136
               +L++L ++  NLT
Sbjct: 221 LYGLNLTSLSITHCNLT 237

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.8 bits (140), Expect = 7e-11
 Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 3/136 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L  +  ++      + PN    L NL SL + +          + +   LR ++LS 
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  S      +  + +L  + L G QL    P     L  L +L +  N LT  +  S+F
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVF 316

Query: 121 -NLSSLSNLDLSVNNL 135
            ++ +L  L L  N L
Sbjct: 317 HSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.8 bits (140), Expect = 7e-11
 Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 3/136 (2%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
           +    +    N +   L  +      +LE L L  N+     P   +N   LR + L  +
Sbjct: 32  TETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 62  DFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
                IP  +   ++ L +L +  N++   +     +L  L+ L + +N L      +  
Sbjct: 91  RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149

Query: 121 NLSSLSNLDLSVNNLT 136
            L+SL  L L   NLT
Sbjct: 150 GLNSLEQLTLEKCNLT 165

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.4 bits (139), Expect = 8e-11
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 1/140 (0%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + +L ++   +N L   +P      LSNL  L +  N     +     +   L+++ +  
Sbjct: 79  LFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +D      +    +  L +L L    L     E L +L  L +L L++  +      S  
Sbjct: 138 NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFK 197

Query: 121 NLSSLSNLDLSVNNLTGSLC 140
            L  L  L++S      ++ 
Sbjct: 198 RLYRLKVLEISHWPYLDTMT 217

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 24/137 (17%), Positives = 51/137 (37%), Gaps = 3/137 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L+ +R  +  +   +       L  L+ L + +  +   +         L ++S++ 
Sbjct: 175 LHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
            + +      + ++  L  L L  N +       L  L  L+ + L    L   +    F
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAF 292

Query: 121 -NLSSLSNLDLSVNNLT 136
             L+ L  L++S N LT
Sbjct: 293 RGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 3/137 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + +L S+   +N L   +     + L++LE L L+           LS+   L  + L  
Sbjct: 127 LYNLKSLEVGDNDL-VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
            + +         + +L  L +        +         L  L + +  LT  +P    
Sbjct: 186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAV 244

Query: 121 -NLSSLSNLDLSVNNLT 136
            +L  L  L+LS N ++
Sbjct: 245 RHLVYLRFLNLSYNPIS 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 3/138 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L  + F ++ L      +    L NL  L + +           +    L  + ++ 
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSS 118
           + F      +I   +  L  L L   QL+ ++      +L+ L++L + +N         
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218

Query: 119 IFNLSSLSNLDLSVNNLT 136
              L+SL  LD S+N++ 
Sbjct: 219 YKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 9/143 (6%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNM--FHGKIPSTLSNCKRLRNISLS 59
           SS   +   +N L   LP    + L+ L  L L +N   F G    +      L+ + LS
Sbjct: 28  SSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 60  LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEE--LGNLAELEMLWLQNNFLTRAIPS 117
            +    T+      + +L  L  + + L+ ++ E     +L  L  L + +        +
Sbjct: 87  FNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTR-VAFN 143

Query: 118 SIF-NLSSLSNLDLSVNNLTGSL 139
            IF  LSSL  L ++ N+   + 
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENF 166

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.6 bits (124), Expect = 7e-09
 Identities = 32/139 (23%), Positives = 54/139 (38%), Gaps = 8/139 (5%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLSL 60
           +SL  +  + N +   +  NF   L  LE L  +++        S   + + L  + +S 
Sbjct: 78  TSLKYLDLSFNGV-ITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSS 118
                     I   ++ L  L + GN  Q     +    L  L  L L    L + +  +
Sbjct: 136 THTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPT 193

Query: 119 IF-NLSSLSNLDLSVNNLT 136
            F +LSSL  L++S NN  
Sbjct: 194 AFNSLSSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 7/139 (5%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPS-TLSNCKRLRNISLS 59
           + +L+ +  ++            N LS+LE L +  N F         +  + L  + LS
Sbjct: 125 LRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 60  LDDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSS 118
                  +      +++ L  L +  N            L  L++L    N +       
Sbjct: 184 QCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQ 241

Query: 119 IFN--LSSLSNLDLSVNNL 135
                 SSL+ L+L+ N+ 
Sbjct: 242 ELQHFPSSLAFLNLTQNDF 260

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.5 bits (139), Expect = 7e-11
 Identities = 27/141 (19%), Positives = 49/141 (34%), Gaps = 5/141 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L  +   +      +      +L NL  L L ++  +   P        L  + L  
Sbjct: 47  LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106

Query: 61  DDFSGTI--PKEIGNVTKLIRLYLRGNQLQG-EIPEELGNLAELEMLWLQNNFLTRAIPS 117
              S  +       N+  L RL L  NQ++   +    G L  L+ +   +N +      
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166

Query: 118 SIFNLS--SLSNLDLSVNNLT 136
            +  L   +LS   L+ N+L 
Sbjct: 167 ELEPLQGKTLSFFSLAANSLY 187

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 6e-10
 Identities = 28/140 (20%), Positives = 46/140 (32%), Gaps = 5/140 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKI-PSTLSNCKRLRNISLS 59
           +++   +  + N +   +  +    L  L+ L L +      I      N   LR + L 
Sbjct: 23  LNTTERLLLSFNYI-RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 60  LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEI--PEELGNLAELEMLWLQNNFLTRAIPS 117
                   P     +  L  L L    L   +       NL  L  L L  N +      
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141

Query: 118 SIF-NLSSLSNLDLSVNNLT 136
             F  L+SL ++D S N + 
Sbjct: 142 PSFGKLNSLKSIDFSSNQIF 161

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 3/115 (2%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNVTKLIRLYLR 83
            L+  E L L  N       S+    ++L+ + L       TI KE   N+  L  L L 
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAI--PSSIFNLSSLSNLDLSVNNLT 136
            +++    P+    L  L  L L    L+ A+       NL +L+ LDLS N + 
Sbjct: 82  SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR 136

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 3e-09
 Identities = 23/111 (20%), Positives = 39/111 (35%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
            S++  L L +              K L+ ++L+ +  +    +    +  L  L L  N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
            L          L ++  + LQ N +      +   L  L  LDL  N LT
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.5 bits (126), Expect = 5e-09
 Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 6/135 (4%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
           SS+  +  ++  +F  L       L +L+ L L  N  +            L+ ++LS +
Sbjct: 266 SSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 62  DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN 121
                       + K+  + L+ N +     +    L +L+ L L++N LT     +I  
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHF 379

Query: 122 LSSLSNLDLSVNNLT 136
           + S+ ++ LS N L 
Sbjct: 380 IPSIPDIFLSGNKLV 394

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 34/140 (24%), Positives = 51/140 (36%), Gaps = 8/140 (5%)

Query: 3   SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG-KIPSTLSNCKRLRNISLSLD 61
           +   I  + N L       F   + +L+ L L  N F       T S    L  + L  +
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 62  DFSGTIPKEI-----GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
                   E+       ++ L  LYL  N L    P    +L  L  L L +N LT  + 
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLS 520

Query: 117 SSIFNLSSLSNLDLSVNNLT 136
            +    ++L  LD+S N L 
Sbjct: 521 HNDL-PANLEILDISRNQLL 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 13/147 (8%)

Query: 3   SLLSIRFTNNTLFGELPPNFCNHLS-----------NLESLFLKNNMFHGKIPSTLSNCK 51
            L  +  + N    ++  NF N +S           ++       +       +T +   
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264

Query: 52  R--LRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNN 109
           R  +R++ LS         +    +  L  L L  N++     E    L  L++L L  N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 110 FLTRAIPSSIFNLSSLSNLDLSVNNLT 136
            L     S+ + L  ++ +DL  N++ 
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 8e-07
 Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 12/143 (8%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG-KIPSTLSNCKRLRNISLS 59
           + S+  I  + N L                 + L  N      I   L     L+ + L+
Sbjct: 380 IPSIPDIFLSGNKL-----VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434

Query: 60  LDDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEEL-----GNLAELEMLWLQNNFLTR 113
            + FS     +       L +L+L  N LQ     EL       L+ L++L+L +N+L  
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494

Query: 114 AIPSSIFNLSSLSNLDLSVNNLT 136
             P    +L++L  L L+ N LT
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 28/160 (17%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + +L  +  + N L GEL  +    L  +  + L+ N        T    ++L+ + L  
Sbjct: 313 LDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQG---------------------EIPEELGNLA 99
           +  +      I  +  +  ++L GN+L                       +I   L  + 
Sbjct: 372 NALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP 426

Query: 100 ELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGS 138
            L++L L  N  +            SL  L L  N L  +
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 26/158 (16%), Positives = 45/158 (28%), Gaps = 22/158 (13%)

Query: 1   MSSLLSIRFTNNTL-FGELPPNFCNHLSNLESLFLKNNMFHG-KIPSTLSNCKRLRNISL 58
           +  L  +R     L    L   +  +L  L  L L  N      +  +      L++I  
Sbjct: 96  LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155

Query: 59  SLDDFSGTIPKEIGNVT--KLIRLYLRGNQLQGEIPEELGNLAE------LEMLWLQNNF 110
           S +        E+  +    L    L  N L   +  + G          LE+L +  N 
Sbjct: 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215

Query: 111 LTRAIPSSIFN------------LSSLSNLDLSVNNLT 136
            T  I  +  N               +       +N+ 
Sbjct: 216 WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 8e-11
 Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 6/114 (5%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
            +++ L SL + NN      P  L+N  +L  + +  +  S      + ++TKL  L + 
Sbjct: 218 ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVG 273

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137
            NQ+       L NL++L  L+L NN L       I  L++L+ L LS N++T 
Sbjct: 274 SNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 8e-11
 Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 6/112 (5%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
           +LS L  L +  N       + + +  +L+ +++  +  S      + N+++L  L+L  
Sbjct: 241 NLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNN 296

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           NQL  E  E +G L  L  L+L  N +T   P  + +LS + + D +   + 
Sbjct: 297 NQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 4e-10
 Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 10/137 (7%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L ++    N +         N L+NL  L+L  +      P  L+N  ++ +++L  
Sbjct: 87  LVKLTNLYIGTNKI--TDISALQN-LTNLRELYLNEDNISDISP--LANLTKMYSLNLGA 141

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +    +    + N+T L  L +  ++++      + NL +L  L L  N +    P  + 
Sbjct: 142 NHNL-SDLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISP--LA 196

Query: 121 NLSSLSNLDLSVNNLTG 137
           +L+SL      VN +T 
Sbjct: 197 SLTSLHYFTAYVNQITD 213

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.1 bits (131), Expect = 9e-10
 Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 8/114 (7%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
            L++L       N      P  ++N  RL ++ +  +  +   P  + N+++L  L +  
Sbjct: 197 SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGT 252

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS 138
           NQ+       + +L +L+ML + +N ++    S + NLS L++L L+ N L   
Sbjct: 253 NQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNE 302

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.1 bits (131), Expect = 1e-09
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 7/114 (6%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
            +L+ + SL L  N       S LSN   L  ++++        P  I N+T L  L L 
Sbjct: 129 ANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLN 185

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137
            NQ++   P  L +L  L       N +T   P  + N++ L++L +  N +T 
Sbjct: 186 YNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD 235

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 24/139 (17%), Positives = 54/139 (38%), Gaps = 11/139 (7%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           ++  +       ++   +       L ++  L +            +     L  ++L+ 
Sbjct: 21  LAEGIRAVLQKASVTDVVTQE---ELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNG 75

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  +   P  + N+ KL  LY+  N++       L NL  L  L+L  + ++   P  + 
Sbjct: 76  NQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LA 129

Query: 121 NLSSLSNLDLSVNNLTGSL 139
           NL+ + +L+L  N+    L
Sbjct: 130 NLTKMYSLNLGANHNLSDL 148

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 4e-08
 Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
            L+      L+          T    + +  + ++ +       + I  +T L  L L G
Sbjct: 20  DLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKV--ASIQGIEYLTNLEYLNLNG 75

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137
           NQ+    P  L NL +L  L++  N +T    S++ NL++L  L L+ +N++ 
Sbjct: 76  NQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD 124

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.7 bits (117), Expect = 7e-08
 Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
            L+ L+ L + +N       S L+N  +L ++ L+ +       + IG +T L  L+L  
Sbjct: 263 DLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTR 113
           N +    P  L +L++++     N  + +
Sbjct: 321 NHITDIRP--LASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.9 bits (102), Expect = 7e-06
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 6/92 (6%)

Query: 45  STLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEML 104
              ++        L     +  +      +  + +L + G ++     + +  L  LE L
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYL 71

Query: 105 WLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
            L  N +T   P  + NL  L+NL +  N +T
Sbjct: 72  NLNGNQITDISP--LSNLVKLTNLYIGTNKIT 101

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 1e-10
 Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 3/114 (2%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
           + LSNLE L +            LS    L  + +S      +I  +I  + K+  + L 
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137
            N    +I   L  L EL+ L +Q + +       I +   L+ L      + G
Sbjct: 145 YNGAITDI-MPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 3e-10
 Identities = 20/115 (17%), Positives = 50/115 (43%), Gaps = 4/115 (3%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
            +++L  + L N        + +     +++++++    +   P  I  ++ L RL + G
Sbjct: 42  QMNSLTYITLANINV--TDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG 97

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL 139
             +  +    L  L  L +L + ++    +I + I  L  ++++DLS N     +
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.7 bits (137), Expect = 1e-10
 Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 7/128 (5%)

Query: 11  NNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKE 70
           +  L            + L  L L                  L  + LS +    ++P  
Sbjct: 39  SENLLYTFSLATLMPYTRLTQLNLDRA--ELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLL 95

Query: 71  IGNVTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNL 128
              +  L  L +  N+L   +P      L EL+ L+L+ N L   +P  +      L  L
Sbjct: 96  GQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKL 153

Query: 129 DLSVNNLT 136
            L+ NNLT
Sbjct: 154 SLANNNLT 161

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 7/116 (6%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNVTKLIRLYL 82
             L  L +L L +N     +P        L  + +S +  + ++P      + +L  LYL
Sbjct: 74  GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131

Query: 83  RGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLT 136
           +GN+L+  +P  L     +LE L L NN LT  +P+ +   L +L  L L  N+L 
Sbjct: 132 KGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 4e-09
 Identities = 36/135 (26%), Positives = 51/135 (37%), Gaps = 7/135 (5%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L ++  ++N L   LP      L  L  L +  N         L     L+ + L  
Sbjct: 76  LPVLGTLDLSHNQL-QSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSS 118
           ++   T+P  +     KL +L L  N L  E+P  L   L  L+ L LQ N L   IP  
Sbjct: 134 NELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKG 190

Query: 119 IFNLSSLSNLDLSVN 133
            F    L    L  N
Sbjct: 191 FFGSHLLPFAFLHGN 205

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.7 bits (137), Expect = 1e-10
 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 26/160 (16%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPST------------LS 48
           ++SL ++   +N L   +P     +LS L  L+L+NN     IPS             L 
Sbjct: 122 LASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLG 179

Query: 49  NCKRLRNIS------------LSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELG 96
             K+L  IS            L+L   +      +  +  L  L + GN      P    
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFH 239

Query: 97  NLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
            L+ L+ LW+ N+ ++    ++   L+SL  L+L+ NNL+
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.1 bits (133), Expect = 5e-10
 Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 4/136 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + SL+ +          +       L NL+ L L        +P  L+    L  + +S 
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSG 227

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           + F    P     ++ L +L++  +Q+          LA L  L L +N L+ ++P  +F
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLF 286

Query: 121 -NLSSLSNLDLSVNNL 135
             L  L  L L  N  
Sbjct: 287 TPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.7 bits (119), Expect = 4e-08
 Identities = 31/110 (28%), Positives = 40/110 (36%), Gaps = 4/110 (3%)

Query: 27  SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ 86
           SN   L L  N        T  +   L  + L  +            +  L  L L  N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 87  LQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNN 134
           L   IP      L++L  LWL+NN +   IPS  F  + SL  LDL    
Sbjct: 135 LT-VIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELK 182

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.7 bits (111), Expect = 4e-07
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 5/118 (4%)

Query: 20  PNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIR 79
           P+ C+  +    +         ++P  +      R ++L  ++          ++  L  
Sbjct: 47  PSVCSCSNQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEV 103

Query: 80  LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLT 136
           L L  N ++         LA L  L L +N+LT  IPS  F  LS L  L L  N + 
Sbjct: 104 LQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIE 160

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.7 bits (137), Expect = 1e-10
 Identities = 43/160 (26%), Positives = 67/160 (41%), Gaps = 26/160 (16%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPS------------TLS 48
           +++L ++   +N L   +P     +LS L+ L+L+NN     IPS             L 
Sbjct: 111 LANLNTLELFDNRL-TTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLG 168

Query: 49  NCKRLRNIS------------LSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELG 96
             KRL  IS            L+L   +      +  + KL  L L GN L    P    
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQ 228

Query: 97  NLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
            L  L+ LW+  + +     ++  NL SL  ++L+ NNLT
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 33/136 (24%), Positives = 52/136 (38%), Gaps = 4/136 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + SL  +          +       LSNL  L L       +IP  L+   +L  + LS 
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSG 216

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  S   P     +  L +L++  +Q+Q        NL  L  + L +N LT  +P  +F
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLF 275

Query: 121 -NLSSLSNLDLSVNNL 135
             L  L  + L  N  
Sbjct: 276 TPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 4/110 (3%)

Query: 27  SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ 86
           +N   L L  N       ++  + + L  + LS +            +  L  L L  N+
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 87  LQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNN 134
           L   IP      L++L+ LWL+NN +   IPS  F  + SL  LDL    
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELK 171

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.3 bits (110), Expect = 6e-07
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 5/118 (4%)

Query: 20  PNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIR 79
           P+ C+  +    +         ++P  +S     R ++L  +           ++  L  
Sbjct: 36  PSVCSCSNQFSKVICVRKNLR-EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEI 92

Query: 80  LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLT 136
           L L  N ++         LA L  L L +N LT  IP+  F  LS L  L L  N + 
Sbjct: 93  LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE 149

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 3/139 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG-KIPSTLSNCKRLRNISLS 59
           + SL  +  ++N L   L  ++   LS+L+ L L  N +    + S   N   L+ + + 
Sbjct: 73  LGSLEHLDLSDNHL-SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131

Query: 60  LDDFSGTIPKE-IGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSS 118
             +    I +     +T L  L ++   L+    + L ++ ++  L L  +     +   
Sbjct: 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIF 191

Query: 119 IFNLSSLSNLDLSVNNLTG 137
              LSS+  L+L   NL  
Sbjct: 192 ADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.1 bits (133), Expect = 5e-10
 Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 7/141 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS- 59
             ++  +      LF        + L  ++ + ++N+       S   + K L  + LS 
Sbjct: 285 TVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343

Query: 60  --LDDFSGTIPKEIGNVTKLIRLYLRGNQLQ--GEIPEELGNLAELEMLWLQNNFLTRAI 115
             + +         G    L  L L  N L+   +  E L  L  L  L +  N     +
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-M 402

Query: 116 PSSIFNLSSLSNLDLSVNNLT 136
           P S      +  L+LS   + 
Sbjct: 403 PDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 9e-10
 Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 2/122 (1%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSG-TIPKEIGNVT 75
            +  +    L +LE L L +N       S       L+ ++L  + +    +     N+T
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 76  KLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNN 134
            L  L +   +   EI       L  L  L ++   L      S+ ++  + +L L ++ 
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 135 LT 136
             
Sbjct: 184 SA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.4 bits (126), Expect = 5e-09
 Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 3/137 (2%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
           +++ S+  + N +   +        +NL+ L LK++  +        +   L ++ LS +
Sbjct: 26  AAMKSLDLSFNKI-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 62  DFSGTIPKEIGNVTKLIRLYLRGNQLQG-EIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
             S       G ++ L  L L GN  Q   +     NL  L+ L + N      I    F
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 121 -NLSSLSNLDLSVNNLT 136
             L+SL+ L++   +L 
Sbjct: 145 AGLTSLNELEIKALSLR 161

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 7e-08
 Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 1/115 (0%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
            + ++SL L  N         L  C  L+ + L     +        ++  L  L L  N
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGSL 139
            L        G L+ L+ L L  N       +S+F NL++L  L +        +
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI 139

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 21/136 (15%), Positives = 48/136 (35%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +++L ++R  N   F E+       L++L  L +K          +L + + + +++L L
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
            + +  +      ++ +  L LR   L       L        +       +     S  
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 121 NLSSLSNLDLSVNNLT 136
            L  L    L ++ + 
Sbjct: 242 ELLKLLRYILELSEVE 257

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 8e-07
 Identities = 31/140 (22%), Positives = 52/140 (37%), Gaps = 12/140 (8%)

Query: 1   MSSLLSIRFTNNTLFGELPPN--FCNHLSNLESLFLKNNMFH--GKIPSTLSNCKRLRNI 56
           + SL  +  + N +  E   N        +L++L L  N      K    L   K L ++
Sbjct: 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSL 392

Query: 57  SLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
            +S + F   +P       K+  L L    ++  +   +     LE+L + NN L  +  
Sbjct: 393 DISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFS 447

Query: 117 SSIFNLSSLSNLDLSVNNLT 136
                L  L  L +S N L 
Sbjct: 448 L---FLPRLQELYISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 42  KIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAEL 101
            IPS L+    ++++ LS +  +     ++     L  L L+ +++     +   +L  L
Sbjct: 19  SIPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76

Query: 102 EMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           E L L +N L+    S    LSSL  L+L  N   
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 11/135 (8%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + +L S+  + NT    +P +       +  L L +              + L   + +L
Sbjct: 386 LKNLTSLDISRNTF-HPMPDSCQW-PEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNL 443

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           D FS         + +L  LY+  N+L+  +P+       L ++ +  N L         
Sbjct: 444 DSFSL-------FLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFD 494

Query: 121 NLSSLSNLDLSVNNL 135
            L+SL  + L  N  
Sbjct: 495 RLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 6/120 (5%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTK 76
            L     N L  L    L+ +           +C        +  +              
Sbjct: 234 VLTDESFNELLKLLRYILELSEVE------FDDCTLNGLGDFNPSESDVVSELGKVETVT 287

Query: 77  LIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           + RL++    L  ++      L +++ + ++N+ +     S   +L SL  LDLS N + 
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 18/123 (14%), Positives = 36/123 (29%), Gaps = 3/123 (2%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTK 76
           EL     +  +         +               +R + +        +      + K
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311

Query: 77  LIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAI---PSSIFNLSSLSNLDLSVN 133
           + R+ +  +++         +L  LE L L  N +        +      SL  L LS N
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 134 NLT 136
           +L 
Sbjct: 372 HLR 374

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 4e-10
 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 10/127 (7%)

Query: 17  ELPPNFC-NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNV 74
            L   +    L+NL SL L +N  +            LR + LS +    T+ + +  ++
Sbjct: 53  RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDL 111

Query: 75  TKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSSIF----NLSSLSNLD 129
             L  L L  N +   +      ++A+L+ L+L  N ++R  P  +      L  L  LD
Sbjct: 112 QALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLD 169

Query: 130 LSVNNLT 136
           LS N L 
Sbjct: 170 LSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.9 bits (127), Expect = 3e-09
 Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 8/139 (5%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +++L S+  ++N L   +       + NL  L L +N  H       S+ + L  + L  
Sbjct: 63  LTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEE----LGNLAELEMLWLQNNFLTRAI 115
           +     + +    ++ +L +LYL  NQ+    P E       L +L +L L +N L +  
Sbjct: 122 NHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179

Query: 116 PSSIFNLSSLSNLDLSVNN 134
            + +  L +     L ++N
Sbjct: 180 LTDLQKLPAWVKNGLYLHN 198

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 5e-10
 Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 3/137 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +++   + F N+T+  +LP    +    +E L L +           +    ++ + +  
Sbjct: 44  LNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +      P    NV  L  L L  N L         N  +L  L + NN L R I    F
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTF 161

Query: 121 -NLSSLSNLDLSVNNLT 136
              +SL NL LS N LT
Sbjct: 162 QATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.3 bits (131), Expect = 8e-10
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 4/111 (3%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
              L  L L++N       + L N   L  + LS ++    +      + +L RLY+  N
Sbjct: 225 NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           +L   +      +  L++L L +N L   +  +      L NL L  N++ 
Sbjct: 283 RLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 5/112 (4%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
           +   L  + L  N     +       +RL  + +S +     +      +  L  L L  
Sbjct: 246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSH 304

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           N L   +         LE L+L +N +   +  S     +L NL LS N+  
Sbjct: 305 NHLL-HVERNQPQFDRLENLYLDHNSIVT-LKLSTH--HTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 2/113 (1%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
            L+N + +  KN+       + L + +++  ++L+                 + +LY+  
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLT 136
           N ++   P    N+  L +L L+ N L+  +P  IF N   L+ L +S NNL 
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLE 154

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 6/137 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
              +  +   +  +  E+      +   ++ L++  N      P    N   L  + L  
Sbjct: 68  FRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
           +D S ++P+ I  N  KL  L +  N L+    +       L+ L L +N LT  +  S+
Sbjct: 127 NDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSL 184

Query: 120 FNLSSLSNLDLSVNNLT 136
               SL + ++S N L+
Sbjct: 185 I--PSLFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 10/94 (10%), Positives = 31/94 (32%)

Query: 43  IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELE 102
           I S L       ++ + +         E   +     +  + + ++      L +  ++E
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 103 MLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           +L L +  +      +     ++  L +  N + 
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 17/114 (14%), Positives = 43/114 (37%), Gaps = 5/114 (4%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
               ++       +++ G    TL+N    + ++             + +  ++  L L 
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNN---QKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLT 136
             Q++            ++ L++  N +   +P  +F N+  L+ L L  N+L+
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 130

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 26/151 (17%), Positives = 49/151 (32%), Gaps = 20/151 (13%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
              L ++  +NN L   +  +     ++L++L L +N       S + +          L
Sbjct: 140 TPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 198

Query: 61  DDFSG---------------TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLW 105
              +                 +   +    +L  L L+ N L  +    L N   L  + 
Sbjct: 199 STLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLT-DTAW-LLNYPGLVEVD 254

Query: 106 LQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           L  N L + +      +  L  L +S N L 
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLV 285

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 27/136 (19%), Positives = 55/136 (40%), Gaps = 11/136 (8%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
            +     + T+++L  +   +      N++ L L  N       + L+   +L  ++LS 
Sbjct: 9   GNRYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +        ++ +++ L  L L  N +Q     EL     +E L   NN ++R +  S  
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR-VSCSRG 119

Query: 121 NLSSLSNLDLSVNNLT 136
                 N+ L+ N +T
Sbjct: 120 --QGKKNIYLANNKIT 133

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.2 bits (131), Expect = 1e-09
 Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 7/112 (6%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
           + +  +   + ++     + S   +   ++ + LS +  S     ++   TKL  L L  
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           N L      +L +L+ L  L L NN++       +    S+  L  + NN++
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
             ++E+L   NN       S        +NI L+ +  +     + G  +++  L L+ N
Sbjct: 98  GPSIETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 86  QLQG-EIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           ++      E   +   LE L LQ NF+   +   +   + L  LDLS N L 
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKLA 204

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 2/94 (2%)

Query: 43  IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELE 102
           I     N  R +   ++       +     +   +  L L GN L      +L    +LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 103 MLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           +L L +N L       + +LS+L  LDL+ N + 
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 11/111 (9%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
            + L++L L +N     +     +   +  ISL  +     I K +     L    LRGN
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
                          L   + +N  +      ++  L+  +  + +V  L 
Sbjct: 248 GFH---------CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.8 bits (132), Expect = 7e-10
 Identities = 30/131 (22%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 11  NNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPS-TLSNCKRLRNISLSLDDFSGTIPK 69
           +     EL     + L +L+ L ++       I + T      L  + L  + F   +  
Sbjct: 38  SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLET 96

Query: 70  EI-GNVTKLIRLYLRGNQLQG-EIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSSL 125
                +  L  L L    L G  +       L  LEML L++N + +  P+S F N+   
Sbjct: 97  GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156

Query: 126 SNLDLSVNNLT 136
             LDL+ N + 
Sbjct: 157 HVLDLTFNKVK 167

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 6/136 (4%)

Query: 5   LSIRFTNNTLFGELPPNFCNHL--SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62
                  +T F +        L  S +++  L  +     + S  S+   L  ++L+ ++
Sbjct: 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310

Query: 63  FSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF- 120
            +  I       +T L++L L  N L         NL +LE+L L  N +  A+    F 
Sbjct: 311 IN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFL 368

Query: 121 NLSSLSNLDLSVNNLT 136
            L +L  L L  N L 
Sbjct: 369 GLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 12/137 (8%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
            +S+ ++  + N     +   F + ++  +   L  +  +    S               
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN----FKDPDN 266

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
             F G         + +    L  +++   +     +  +LE L L  N +   I  + F
Sbjct: 267 FTFKGLEA------SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAF 319

Query: 121 -NLSSLSNLDLSVNNLT 136
             L+ L  L+LS N L 
Sbjct: 320 WGLTHLLKLNLSQNFLG 336

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 27/121 (22%), Positives = 42/121 (34%), Gaps = 28/121 (23%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTK 76
           ++  N    L++L  L L  N                   S+    F          + K
Sbjct: 313 KIDDNAFWGLTHLLKLNLSQNFLG----------------SIDSRMFEN--------LDK 348

Query: 77  LIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNN 134
           L  L L  N ++  + ++    L  L+ L L  N L   +P  IF  L+SL  + L  N 
Sbjct: 349 LEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNP 406

Query: 135 L 135
            
Sbjct: 407 W 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 79  RLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLT 136
            + L  N +          L +L+ L ++       I ++ F  LSSL  L L  N   
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.2 bits (131), Expect = 8e-10
 Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 8/138 (5%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKI--PSTLSNCKRLRNISLS 59
            +L  +R   N +  ++  +  N L+ +  + L  N               K+L  I ++
Sbjct: 121 KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179

Query: 60  LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSS 118
             + + TIP+  G    L  L+L GN++  ++    L  L  L  L L  N ++     S
Sbjct: 180 DTNIT-TIPQ--GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGS 235

Query: 119 IFNLSSLSNLDLSVNNLT 136
           + N   L  L L+ N L 
Sbjct: 236 LANTPHLRELHLNNNKLV 253

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.2 bits (131), Expect = 1e-09
 Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 13/143 (9%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           M  L  IR  +  +   +P        +L  L L  N       ++L     L  + LS 
Sbjct: 170 MKKLSYIRIADTNI-TTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  S      + N   L  L+L  N+L  ++P  L +   +++++L NN ++  I S+ F
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA-IGSNDF 283

Query: 121 -------NLSSLSNLDLSVNNLT 136
                    +S S + L  N + 
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 11/131 (8%)

Query: 11  NNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS---LDDFSGTI 67
            N    E+      +L NL +L L NN      P   +   +L  + LS   L +    +
Sbjct: 60  QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119

Query: 68  PKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA-IPSSIF-NLSSL 125
           PK       L  L +  N++          L ++ ++ L  N L  + I +  F  +  L
Sbjct: 120 PK------TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173

Query: 126 SNLDLSVNNLT 136
           S + ++  N+T
Sbjct: 174 SYIRIADTNIT 184

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.2 bits (118), Expect = 5e-08
 Identities = 22/142 (15%), Positives = 44/142 (30%), Gaps = 15/142 (10%)

Query: 1   MSSLLSIRFTNNTL-FGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLR----N 55
           ++ ++ +    N L    +       +  L  + + +            +   L      
Sbjct: 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNK 203

Query: 56  I-SLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA 114
           I  +      G           L +L L  N +       L N   L  L L NN L + 
Sbjct: 204 ITKVDAASLKGL--------NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK- 254

Query: 115 IPSSIFNLSSLSNLDLSVNNLT 136
           +P  + +   +  + L  NN++
Sbjct: 255 VPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 10/117 (8%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS- 59
           +++L  +  + N++   +      +  +L  L L NN    K+P  L++ K ++ + L  
Sbjct: 215 LNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272

Query: 60  -----LDDFSGTIPKEIGNVTKLIRLYLRGNQLQ-GEIPEEL-GNLAELEMLWLQNN 109
                +       P           + L  N +Q  EI       +     + L N 
Sbjct: 273 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 66  TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSL 125
            +PK++   T    L L+ N++      +  NL  L  L L NN +++  P +   L  L
Sbjct: 45  KVPKDLPPDTA--LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102

Query: 126 SNLDLSVNNLT 136
             L LS N L 
Sbjct: 103 ERLYLSKNQLK 113

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.2 bits (130), Expect = 1e-09
 Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 3/137 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +++   + F N+T+  +LP    +    +E L L +           +    ++ + +  
Sbjct: 50  LNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +      P    NV  L  L L  N L         N  +L  L + NN L R I    F
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTF 167

Query: 121 -NLSSLSNLDLSVNNLT 136
              +SL NL LS N LT
Sbjct: 168 QATTSLQNLQLSSNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.6 bits (126), Expect = 4e-09
 Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 4/111 (3%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
              L  L L++N       + L N   L  + LS ++    +      + +L RLY+  N
Sbjct: 231 NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           +L   +      +  L++L L +N L   +  +      L NL L  N++ 
Sbjct: 289 RLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.1 bits (122), Expect = 1e-08
 Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 5/112 (4%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
           +   L  + L  N     +       +RL  + +S +     +      +  L  L L  
Sbjct: 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSH 310

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           N L   +         LE L+L +N +   +  S     +L NL LS N+  
Sbjct: 311 NHLL-HVERNQPQFDRLENLYLDHNSIVT-LKLSTH--HTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.8 bits (116), Expect = 7e-08
 Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 2/113 (1%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
            L+N + +  KN+       + L + +++  ++L+                 + +LY+  
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLT 136
           N ++   P    N+  L +L L+ N L+  +P  IF N   L+ L +S NNL 
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLE 160

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 6/137 (4%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
              +  +   +  +  E+      +   ++ L++  N      P    N   L  + L  
Sbjct: 74  FRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 132

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
           +D S ++P+ I  N  KL  L +  N L+    +       L+ L L +N LT  +  S+
Sbjct: 133 NDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSL 190

Query: 120 FNLSSLSNLDLSVNNLT 136
               SL + ++S N L+
Sbjct: 191 I--PSLFHANVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 10/94 (10%), Positives = 31/94 (32%)

Query: 43  IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELE 102
           I S L       ++ + +         E   +     +  + + ++      L +  ++E
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 103 MLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           +L L +  +      +     ++  L +  N + 
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.7 bits (95), Expect = 6e-05
 Identities = 17/114 (14%), Positives = 43/114 (37%), Gaps = 5/114 (4%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
               ++       +++ G    TL+N    + ++             + +  ++  L L 
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDITLNN---QKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLT 136
             Q++            ++ L++  N +   +P  +F N+  L+ L L  N+L+
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 10/113 (8%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
           + + +L    +  N+      STL+    +  +  S +  +  +   +    +L  L L+
Sbjct: 189 SLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQ 240

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
            N L       L N   L  + L  N L + +      +  L  L +S N L 
Sbjct: 241 HNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 18  LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNVTK 76
           LP      L NLE+L++ +N               L  + L  +    ++P  +  ++TK
Sbjct: 76  LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTK 134

Query: 77  LIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNN 134
           L  L L  N+LQ  +P+ +   L  L+ L L NN L   +P   F  L+ L  L L  N 
Sbjct: 135 LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQ 192

Query: 135 LT 136
           L 
Sbjct: 193 LK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 18  LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNVTK 76
           LP    + L+ L  L+L +N             K L  + ++ +     +P  +   +  
Sbjct: 52  LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVN 110

Query: 77  LIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNN 134
           L  L L  NQL+  +P  +  +L +L  L L  N L  ++P  +F  L+SL  L L  N 
Sbjct: 111 LAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQ 168

Query: 135 LT 136
           L 
Sbjct: 169 LK 170

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 79  RLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN-LSSLSNLDLSVNNLT 136
           +L L+ N+L     +    L +L +L+L +N L   +P+ IF  L +L  L ++ N L 
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.6 bits (126), Expect = 4e-09
 Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 16/113 (14%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
                L +L +  N     +P        L   S  L              + L +L++ 
Sbjct: 78  ALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIF 129

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           GNQL   +P        L+ L + +N L  ++P+     S L  L    N LT
Sbjct: 130 GNQLT-SLPVLPPG---LQELSVSDNQLA-SLPALP---SELCKLWAYNNQLT 174

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 7e-09
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 9/117 (7%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
              S L+ L +  N     +P   S    L+ + +S  +   ++P        L+ L + 
Sbjct: 218 ALPSGLKELIVSGNRL-TSLPVLPSE---LKELMVS-GNRLTSLPMLPSG---LLSLSVY 269

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC 140
            NQL   +PE L +L+    + L+ N L+     ++  ++S       +     +  
Sbjct: 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGA 325

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 8/101 (7%)

Query: 41  GKIPSTLSNCKRLRNISLSLDDFS-GTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLA 99
             +   +  C    N  L++ +    T+P  +     +  L +  N L   +P     L 
Sbjct: 28  AAVVQKMRACLNNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPALPPELR 84

Query: 100 ELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC 140
            LE   +  N LT  +P     L  LS     + +L     
Sbjct: 85  TLE---VSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPS 121

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.0 bits (114), Expect = 1e-07
 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 21/136 (15%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
              L  +  ++N L   LP         L  L+  NN     +P   S    L+ +S+S 
Sbjct: 140 PPGLQELSVSDNQL-ASLPALPSE----LCKLWAYNNQLT-SLPMLPSG---LQELSVSD 190

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           +  + ++P        L +L+   N+L   +P     L EL    +  N LT ++P    
Sbjct: 191 NQLA-SLPTLPSE---LYKLWAYNNRLT-SLPALPSGLKELI---VSGNRLT-SLPVLP- 240

Query: 121 NLSSLSNLDLSVNNLT 136
             S L  L +S N LT
Sbjct: 241 --SELKELMVSGNRLT 254

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 19/120 (15%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTK 76
            LP       +++ +L + +N     +P+     + L      L     ++P     + +
Sbjct: 54  TLPDCL---PAHITTLVIPDNNLT-SLPALPPELRTLEVSGNQLT----SLPVLPPGLLE 105

Query: 77  LIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           L         L    P     L +L   W+  N LT  +P     L     L +S N L 
Sbjct: 106 LSIFSNPLTHL----PALPSGLCKL---WIFGNQLTS-LPVLPPGLQE---LSVSDNQLA 154

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.8 bits (111), Expect = 4e-07
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 15/111 (13%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
            +    L +  +     +P  L     +  + +  ++ + ++P        L  L + GN
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPE---LRTLEVSGN 91

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           QL   +P     L EL +       L           S L  L +  N LT
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPA-------LPSGLCKLWIFGNQLT 134

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 14/130 (10%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRL--RNISL 58
            S L  +  + N L   LP       S L+ L +  N     +P   S    L      L
Sbjct: 220 PSGLKELIVSGNRL-TSLPV----LPSELKELMVSGNRL-TSLPMLPSGLLSLSVYRNQL 273

Query: 59  SLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSS 118
           +       +P+ + +++    + L GN L     + L  +               A  S+
Sbjct: 274 T------RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASA 327

Query: 119 IFNLSSLSNL 128
                +L   
Sbjct: 328 PRETRALHLA 337

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.2 bits (125), Expect = 5e-09
 Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 10/120 (8%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTK 76
           +   +      N++ L L  N       + L+   +L  ++LS +    T+   + +++ 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLST 81

Query: 77  LIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           L  L L  N +Q     EL     +E L   NN ++R +  S        N+ L+ N +T
Sbjct: 82  LRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR-VSCSRG--QGKKNIYLANNKIT 133

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 9e-09
 Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 7/112 (6%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
           + +  +   + ++     + S   +   ++ + LS +  S     ++   TKL  L L  
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           N L      +L +L+ L  L L NN++       +    S+  L  + NN++
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 4e-08
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 6/112 (5%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
             ++E+L   NN       S        +NI L+ +  +     + G  +++  L L+ N
Sbjct: 98  GPSIETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154

Query: 86  QLQG-EIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           ++      E   +   LE L LQ NF+   +   +   + L  LDLS N L 
Sbjct: 155 EIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKLA 204

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 5e-08
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 2/94 (2%)

Query: 43  IPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELE 102
           I     N  R +   ++       +     +   +  L L GN L      +L    +LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 103 MLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           +L L +N L       + +LS+L  LDL+ N + 
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 13/71 (18%), Positives = 28/71 (39%)

Query: 67  IPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLS 126
           I +   N  +     +  + L+  +     +   ++ L L  N L++   + +   + L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 127 NLDLSVNNLTG 137
            L+LS N L  
Sbjct: 62  LLNLSSNVLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 6e-06
 Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 9/113 (7%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
            LS L +L L NN         L     +  +  + ++ S  +    G       +YL  
Sbjct: 78  SLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSRG--QGKKNIYLAN 129

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLT 136
           N++      + G  + ++ L L+ N +     + +  +  +L +L+L  N + 
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 14/111 (12%), Positives = 31/111 (27%), Gaps = 3/111 (2%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
            + L++L L +N     +     +   +  ISL  +     I K +     L    LRGN
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
                   +        +  +    + +    +    +  +          
Sbjct: 248 GFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 7/125 (5%)

Query: 18  LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKL 77
           +       LS+L +L L  N          S    L+ +     + +      IG++  L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 78  IRLYLRGNQLQG-EIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSL----SNLDLS 131
             L +  N +Q  ++PE   NL  LE L L +N +  +I  +    L  +     +LDLS
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLS 185

Query: 132 VNNLT 136
           +N + 
Sbjct: 186 LNPMN 190

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.7 bits (109), Expect = 9e-07
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 27  SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNVTKLIRLYLRGN 85
            + ++L L  N        +  +   L+ + LS  +   TI      +++ L  L L GN
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLT 136
            +Q         L+ L+ L      L   + +    +L +L  L+++ N + 
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQ 137

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 10/123 (8%)

Query: 18  LPPNFCNHLSNLESLFLKNNMFHG-KIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNVT 75
           L      HL  L+ L + +N+    K+P   SN   L ++ LS +    +I       + 
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLH 173

Query: 76  KL----IRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDL 130
           ++    + L L  N +   I         L+ L L  N L  ++P  IF  L+SL  + L
Sbjct: 174 QMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWL 231

Query: 131 SVN 133
             N
Sbjct: 232 HTN 234

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.1 bits (124), Expect = 6e-09
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 9/126 (7%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNIS------LSLDDFSGTIPKE 70
                   + S L+++      +   + S       +  +       L L     T+   
Sbjct: 399 LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH 458

Query: 71  IGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDL 130
           +  +  +  L L  N+L+  +P  L  L  LE+L   +N L       + NL  L  L L
Sbjct: 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLL 515

Query: 131 SVNNLT 136
             N L 
Sbjct: 516 CNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 4e-08
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 10/110 (9%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS---LDDFSGTIPKEIGNVTKLIRLY 81
            L  +  L L +N     +P  L+  + L  +  S   L++  G     + N+ +L  L 
Sbjct: 461 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDG-----VANLPRLQELL 514

Query: 82  LRGNQLQG-EIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDL 130
           L  N+LQ     + L +   L +L LQ N L +           L ++  
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.0 bits (116), Expect = 7e-08
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 6/119 (5%)

Query: 19  PPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLI 78
                   +++  L L +      +   L     + ++ LS +     +P  +  +  L 
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLE 489

Query: 79  RLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR-AIPSSIFNLSSLSNLDLSVNNLT 136
            L    N L  E  + + NL  L+ L L NN L + A    + +   L  L+L  N+L 
Sbjct: 490 VLQASDNAL--ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 37.4 bits (86), Expect = 7e-04
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 10/104 (9%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS- 59
           +  +  +  ++N L   LPP     L  LE L   +N    +    ++N  RL+ + L  
Sbjct: 462 LLLVTHLDLSHNRLR-ALPPALAA-LRCLEVLQASDNAL--ENVDGVANLPRLQELLLCN 517

Query: 60  --LDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAEL 101
             L   +    + + +  +L+ L L+GN L  +       LAE+
Sbjct: 518 NRLQQSAA--IQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.8 bits (124), Expect = 8e-09
 Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 7/139 (5%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFH--GKIPSTLSNCKRLRNISL 58
           +S  L + F+NN L  +     C HL+ LE+L L+ N      KI    +  K L+ + +
Sbjct: 323 ISPFLHLDFSNNLL-TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381

Query: 59  SLDDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS 117
           S +  S    K        L+ L +  N L   I   L     +++L L +N +  +IP 
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPK 438

Query: 118 SIFNLSSLSNLDLSVNNLT 136
            +  L +L  L+++ N L 
Sbjct: 439 QVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 6/144 (4%)

Query: 2   SSLLSIRFTNNTLFG----ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNIS 57
           +++     +N  L G             L  L    + +++F             +   +
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306

Query: 58  LSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR--AI 115
            ++             ++  + L    N L   + E  G+L ELE L LQ N L     I
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366

Query: 116 PSSIFNLSSLSNLDLSVNNLTGSL 139
                 + SL  LD+S N+++   
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDE 390

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 4e-06
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 27/135 (20%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           M SL  +  + N++  +     C+   +L SL + +N+    I   L             
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP------------ 420

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
                          ++  L L  N+++  IP+++  L  L+ L + +N L         
Sbjct: 421 --------------PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFD 465

Query: 121 NLSSLSNLDLSVNNL 135
            L+SL  + L  N  
Sbjct: 466 RLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 4/121 (3%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTK 76
           EL  +    LS L  L + +N       S     + L  + LS +     I         
Sbjct: 35  ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KIS--CHPTVN 91

Query: 77  LIRLYLRGNQLQG-EIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135
           L  L L  N      I +E GN+++L+ L L    L ++    I +L+    L +     
Sbjct: 92  LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151

Query: 136 T 136
            
Sbjct: 152 G 152

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 2/118 (1%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTK 76
            L  +       LE L L +N           N K L     + D     I KE GN+++
Sbjct: 59  YLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDAL--PICKEFGNMSQ 116

Query: 77  LIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNN 134
           L  L L    L+      + +L   ++L +                 +  +L +    
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 67  IPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLS 126
           +PK++   T    L +  N +      ++ +L++L +L + +N +     S       L 
Sbjct: 15  VPKDLSQKTT--ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72

Query: 127 NLDLSVNNLT 136
            LDLS N L 
Sbjct: 73  YLDLSHNKLV 82

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 9e-09
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
            L+ L  L L  N      P  L+    L N+ L+ +      P  I N+  L  L L  
Sbjct: 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 318

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137
           N +    P  + +L +L+ L+  NN ++    SS+ NL++++ L    N ++ 
Sbjct: 319 NNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD 367

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 9e-09
 Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 10/135 (7%)

Query: 3   SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62
            L S   T +T   ++  +    L+      L        +    ++  ++   +L  D 
Sbjct: 2   PLGSATITQDTPINQIFTD--TALAEKMKTVLGKTNVTDTVS--QTDLDQVT--TLQADR 55

Query: 63  FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNL 122
                   +  +  L ++    NQL    P  L NL +L  + + NN +    P  + NL
Sbjct: 56  LGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL 111

Query: 123 SSLSNLDLSVNNLTG 137
           ++L+ L L  N +T 
Sbjct: 112 TNLTGLTLFNNQITD 126

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 8/113 (7%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
            L+ L +L L  N      P  +SN K L  ++L  ++ S   P  + ++TKL RL+   
Sbjct: 285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 340

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137
           N++       L NL  +  L   +N ++   P  + NL+ ++ L L+    T 
Sbjct: 341 NKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 8/114 (7%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
             L+NL+ L L  N    K   TL++   L ++ L+ +  S   P  +  +TKL  L L 
Sbjct: 218 GILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 273

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137
            NQ+    P  L  L  L  L L  N L     S I NL +L+ L L  NN++ 
Sbjct: 274 ANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD 323

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
            L+NLESL   NN      P  L     L    LSL+         + ++T L  L L  
Sbjct: 197 KLTNLESLIATNNQISDITP--LGILTNLD--ELSLNGNQLKDIGTLASLTNLTDLDLAN 252

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137
           NQ+    P  L  L +L  L L  N ++    S +  L++L+NL+L+ N L  
Sbjct: 253 NQISNLAP--LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 301

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
           + L+ L+ LF  NN       S+L+N   +  +S   +  S   P  + N+T++ +L L 
Sbjct: 328 SSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 383

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
                        N++    +      L    P++I +  S +  D++ N  +
Sbjct: 384 DQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 5e-08
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 9/113 (7%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
           +L+ L  + + NN      P  L+N   L  ++L  +  +   P  + N+T L RL L  
Sbjct: 88  NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 143

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137
           N +       L  L  L+ L   N          + NL++L  LD+S N ++ 
Sbjct: 144 NTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD 191

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 9/138 (6%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNN-MFHGKIPSTLSNCKRLRNISLSL 60
           SSL+ +R  +N +  ++P    + L N+  + +  N + +        +  +L  + +S 
Sbjct: 123 SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSSI 119
              +  IPK       L  L+L  N++Q  I  E L   ++L  L L +N +   I +  
Sbjct: 182 AKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRM-IENGS 236

Query: 120 F-NLSSLSNLDLSVNNLT 136
              L +L  L L  N L+
Sbjct: 237 LSFLPTLRELHLDNNKLS 254

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 13/141 (9%)

Query: 3   SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD 62
            L  +R +   L   +P +       L  L L +N         L    +L  + L  + 
Sbjct: 173 KLNYLRISEAKL-TGIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228

Query: 63  FSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-- 120
                   +  +  L  L+L  N+L   +P  L +L  L++++L  N +T+ +  + F  
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK-VGVNDFCP 286

Query: 121 -----NLSSLSNLDLSVNNLT 136
                  +  + + L  N + 
Sbjct: 287 VGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 5/113 (4%)

Query: 27  SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ 86
            +   L L+NN             + L  + L  +  S    K    + KL +LY+  N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 87  LQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLTGS 138
           L  EIP  L   + L  L + +N + + +P  +F  L +++ +++  N L  S
Sbjct: 114 LV-EIPPNL--PSSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENS 162

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.8 bits (109), Expect = 7e-07
 Identities = 35/142 (24%), Positives = 52/142 (36%), Gaps = 16/142 (11%)

Query: 1   MSSLLSIRFTNNTL-FGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLR----N 55
           + ++  I    N L      P   + L  L  L +      G           L      
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNK 204

Query: 56  IS-LSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA 114
           I  + L+D            +KL RL L  NQ++      L  L  L  L L NN L+R 
Sbjct: 205 IQAIELEDLLRY--------SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR- 255

Query: 115 IPSSIFNLSSLSNLDLSVNNLT 136
           +P+ + +L  L  + L  NN+T
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 10/117 (8%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS- 59
            S L  +   +N +   +     + L  L  L L NN    ++P+ L + K L+ + L  
Sbjct: 216 YSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT 273

Query: 60  -----LDDFSGTIPKEIGNVTKLIRLYLRGNQLQ-GEIPEEL-GNLAELEMLWLQNN 109
                +                   + L  N +   E+       + +   +   N 
Sbjct: 274 NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 66  TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSL 125
            +PKEI   T    L L+ N +     ++   L  L  L L NN +++    +   L  L
Sbjct: 47  AVPKEISPDTT--LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104

Query: 126 SNLDLSVNNLT 136
             L +S N+L 
Sbjct: 105 QKLYISKNHLV 115

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 4/139 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L  IR         + P    +L NL+ L + N            +  +   + +  
Sbjct: 78  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137

Query: 61  DDFSGTIPKEI--GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSS 118
           +    TI +    G   + + L+L  N +Q             E+    NN L   +P+ 
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE-LPND 196

Query: 119 IF-NLSSLSNLDLSVNNLT 136
           +F   S    LD+S   + 
Sbjct: 197 VFHGASGPVILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 27  SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNVTKLIRLYL-RG 84
            N   L               S    L  I +S +D    I  ++  N+ KL  + + + 
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNN 134
           N L    PE   NL  L+ L + N  +   +P     +      LD+  N 
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNI 139

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.9 bits (101), Expect = 7e-06
 Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 7/140 (5%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPS-TLSNCKRLRNISLSL 60
            + + +RF    L   +     +   +LE + +  N     I +   SN  +L  I +  
Sbjct: 30  RNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSS 118
            +    I  E   N+  L  L +    ++  +P+    +  +  +L +Q+N     I  +
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 119 IFN--LSSLSNLDLSVNNLT 136
            F         L L+ N + 
Sbjct: 148 SFVGLSFESVILWLNKNGIQ 167

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 7/139 (5%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFH--GKIPSTLSNCKRLRNISL 58
            SS   + FT N    +     C+ L  L++L L+ N      K+     N   L  + +
Sbjct: 352 PSSFTFLNFTQNVF-TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410

Query: 59  SLDDF-SGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS 117
           SL+   S    +       ++ L L  N L G +   L    ++++L L NN +  +IP 
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPK 467

Query: 118 SIFNLSSLSNLDLSVNNLT 136
            + +L +L  L+++ N L 
Sbjct: 468 DVTHLQALQELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.9 bits (101), Expect = 9e-06
 Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 3/137 (2%)

Query: 5   LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS 64
           L I    N +F        +  + +    L  +           +      ++ + + F+
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 65  GTIPKEIGNVTKLIRLYLRGNQLQ--GEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNL 122
            ++ +    + +L  L L+ N L+   ++     N++ LE L +  N L           
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426

Query: 123 -SSLSNLDLSVNNLTGS 138
             S+  L+LS N LTGS
Sbjct: 427 AESILVLNLSSNMLTGS 443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 37.5 bits (87), Expect = 6e-04
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 75  TKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVN 133
            +   L L  N +      ++  L+EL +L L +N +  ++   +F     L  LD+S N
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN 110

Query: 134 NLT 136
            L 
Sbjct: 111 RLQ 113

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNVT 75
            +PP   +    L  + L NN      P      + L ++ L  +  +  +PK +   + 
Sbjct: 46  VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLF 104

Query: 76  KLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVN 133
            L  L L  N++   +  +   +L  L +L L +N L   I    F  L ++  + L+ N
Sbjct: 105 SLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 4/112 (3%)

Query: 27  SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNVTKLIRLYLRGN 85
             +  + L+ N      P   S  K+LR I LS +  S  +  +    +  L  L L GN
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLT 136
           ++          L  L++L L  N +   +    F +L +L+ L L  N L 
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQ 141

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.4 bits (120), Expect = 2e-08
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 12/121 (9%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS-GTIPKEIGNVT 75
               ++ +     E   L       +  S L  C   +   L L+  +  ++P  +    
Sbjct: 24  GTYADYFSAWDKWEKQALPGEN-RNEAVSLLKECLINQFSELQLNRLNLSSLPDNLP--P 80

Query: 76  KLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135
           ++  L +  N L   +PE   +   LE L   +N L+  +P      +SL +LD+  N L
Sbjct: 81  QITVLEITQNALI-SLPELPAS---LEYLDACDNRLS-TLPELP---ASLKHLDVDNNQL 132

Query: 136 T 136
           T
Sbjct: 133 T 133

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.4 bits (120), Expect = 3e-08
 Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 19/120 (15%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTK 76
            LP N       +  L +  N     +P   ++ + L      L     T+P+   +   
Sbjct: 73  SLPDNLP---PQITVLEITQNALI-SLPELPASLEYLDACDNRLS----TLPELPAS--- 121

Query: 77  LIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           L  L +  NQL   +PE    L   E +   NN LT  +P      +SL  L +  N LT
Sbjct: 122 LKHLDVDNNQLT-MLPELPALL---EYINADNNQLT-MLPELP---TSLEVLSVRNNQLT 173

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.2 bits (117), Expect = 5e-08
 Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 21/135 (15%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
             +  +  T N L   LP       ++LE L   +N     +P   ++ K L   +  L 
Sbjct: 80  PQITVLEITQNAL-ISLPEL----PASLEYLDACDNRLS-TLPELPASLKHLDVDNNQLT 133

Query: 62  DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN 121
                +P+       L  +    NQL   +PE   +   LE+L ++NN LT  +P     
Sbjct: 134 ----MLPELPAL---LEYINADNNQLT-MLPELPTS---LEVLSVRNNQLTF-LPEL--- 178

Query: 122 LSSLSNLDLSVNNLT 136
             SL  LD+S N L 
Sbjct: 179 PESLEALDVSTNLLE 193

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.7 bits (108), Expect = 1e-06
 Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 9/119 (7%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
            +SL  +   NN L   LP        +LE+L +  N+    +P+            +  
Sbjct: 159 PTSLEVLSVRNNQL-TFLPEL----PESLEALDVSTNLLES-LPAVPVRNHHSEETEIFF 212

Query: 61  DDFS---GTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
                    IP+ I ++     + L  N L   I E L              + + +  
Sbjct: 213 RCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 29/134 (21%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD 61
             L  I F+NN +  ++        S +  + L +N                   ++   
Sbjct: 57  PQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNRLE----------------NVQHK 99

Query: 62  DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF 120
            F G        +  L  L LR N++   +  +    L+ + +L L +N +T  +    F
Sbjct: 100 MFKG--------LESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITT-VAPGAF 149

Query: 121 -NLSSLSNLDLSVN 133
             L SLS L+L  N
Sbjct: 150 DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 73  NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLS 131
            + +L ++    N++           + +  + L +N L   +   +F  L SL  L L 
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLR 113

Query: 132 VNNLT 136
            N +T
Sbjct: 114 SNRIT 118

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 5/113 (4%)

Query: 27  SNLESLFLKNNMFHGKIPST--LSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG 84
                L L NN F   + +T       +LR I+ S +  +          + +  + L  
Sbjct: 32  QYTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLT 136
           N+L+    +    L  L+ L L++N +T  + +  F  LSS+  L L  N +T
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.1 bits (119), Expect = 3e-08
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 18/118 (15%)

Query: 24  NHLSNLESLFLKNNMFHGKIP--STLSNCKRLRNISLS---LDDFSGTIPKEIGNVTKLI 78
            +L N+  LFL  N    K+     L+N K L  + L    + D S      + ++ KL 
Sbjct: 62  QYLPNVTKLFLNGN----KLTDIKPLTNLKNLGWLFLDENKIKDLSS-----LKDLKKLK 112

Query: 79  RLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
            L L  N +  +I   L +L +LE L+L NN +T    + +  L+ L  L L  N ++
Sbjct: 113 SLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS 166

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 12/116 (10%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS---LDDFSGTIPKEIGNVTKLIRL 80
           + L+ L++L L++N     I   L+   +L+N+ LS   + D        +  +  L  L
Sbjct: 150 SRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISDLRA-----LAGLKNLDVL 202

Query: 81  YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
            L   +   +      NL     +   +   +   P  I +       ++  +   
Sbjct: 203 ELFSQECLNKPINHQSNLVVPNTVKNTDG--SLVTPEIISDDGDYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 40.1 bits (93), Expect = 9e-05
 Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 6/92 (6%)

Query: 45  STLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEML 104
                       +L     +  +      +  + ++    + ++  + + +  L  +  L
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKL 70

Query: 105 WLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           +L  N LT      + NL +L  L L  N + 
Sbjct: 71  FLNGNKLTDI--KPLTNLKNLGWLFLDENKIK 100

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 3e-08
 Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 66  TIPKEIGNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSSIF-NLS 123
                +     L  LY+   Q    +    L  L EL  L +  + L R +    F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTP 80

Query: 124 SLSNLDLSVNNLT 136
            LS L+LS N L 
Sbjct: 81  RLSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 3e-07
 Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 4/96 (4%)

Query: 43  IPSTLSNCKRLRNISLSLDDFSGTIPKE-IGNVTKLIRLYLRGNQLQGEIPEE-LGNLAE 100
               L   + L  + +        +    +  + +L  L +  + L+  +  +       
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 101 LEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           L  L L  N L   +        SL  L LS N L 
Sbjct: 82  LSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 1/88 (1%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
             +L  +   N      L       L  L +L +  +      P       RL  ++LS 
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQ 88
           +    ++  +      L  L L GN L 
Sbjct: 90  NALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.0 bits (117), Expect = 6e-08
 Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 9/145 (6%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           ++ L  +R  N   F ++       L+ LE L +  +      P +L + + + ++ L +
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEEL--------GNLAELEMLWLQNNFLT 112
                 +   +   + +  L LR   L      EL                + + +  L 
Sbjct: 208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267

Query: 113 RAIPSSIFNLSSLSNLDLSVNNLTG 137
             +   +  +S L  L+ S N L  
Sbjct: 268 -QVMKLLNQISGLLELEFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 5/139 (3%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLSL 60
            SL  +  + N L   L  ++   LS+L  L L  N +      S  S+  +L+ + +  
Sbjct: 100 GSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI 119
            D    I ++    +T L  L +  + LQ   P+ L ++  +  L L        +    
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIF 217

Query: 120 F-NLSSLSNLDLSVNNLTG 137
               SS+  L+L   +L  
Sbjct: 218 VDVTSSVECLELRDTDLDT 236

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 23/145 (15%), Positives = 45/145 (31%), Gaps = 12/145 (8%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           ++ L  +    + L     P     + N+  L L        +   +     +  + L  
Sbjct: 173 LTFLEELEIDASDL-QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231

Query: 61  DDFSGTIPKEI--------GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLT 112
            D       E+                + +    L  ++ + L  ++ L  L    N L 
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK 290

Query: 113 RAIPSSIF-NLSSLSNLDLSVNNLT 136
            ++P  IF  L+SL  + L  N   
Sbjct: 291 -SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.7 bits (111), Expect = 4e-07
 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNVT 75
            +  +      NL++L L +N  +     + S+   L ++ LS +  S  +       ++
Sbjct: 66  YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLS 124

Query: 76  KLIRLYLRGNQLQGEIPEE--LGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSV 132
            L  L L GN  +  + E     +L +L++L + N      I    F  L+ L  L++  
Sbjct: 125 SLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183

Query: 133 NNLT 136
           ++L 
Sbjct: 184 SDLQ 187

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.3 bits (110), Expect = 5e-07
 Identities = 27/138 (19%), Positives = 55/138 (39%), Gaps = 3/138 (2%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
             +L ++  T+N +   +  +  + L +LE L L  N       S       L  ++L  
Sbjct: 75  CVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIPSS 118
           + +       +  ++TKL  L +       +I  +    L  LE L +  + L    P S
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193

Query: 119 IFNLSSLSNLDLSVNNLT 136
           + ++ ++S+L L +    
Sbjct: 194 LKSIQNVSHLILHMKQHI 211

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 75  TKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVN 133
             +  L L  N++      +L     L+ L L +N +   I    F +L SL +LDLS N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 134 NLT 136
            L+
Sbjct: 111 YLS 113

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 75  TKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVN 133
             L  L++  N+L  E+P  +  L  L  L L  N L ++IP   F  LSSL++  L  N
Sbjct: 112 VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 54  RNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR 113
           + + L  +  +   P    ++  L  LYL  NQL         +L +L +L L  N LT 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT- 101

Query: 114 AIPSSIFN-LSSLSNLDLSVNNLT 136
            +PS++F+ L  L  L +  N LT
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT 125

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.1 bits (94), Expect = 6e-05
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 67  IPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN-LSSL 125
           +P  I    +   LYL  NQ+    P    +L  L+ L+L +N L  A+P  +F+ L+ L
Sbjct: 34  VPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQL 90

Query: 126 SNLDLSVNNLT 136
           + LDL  N LT
Sbjct: 91  TVLDLGTNQLT 101

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 39.7 bits (93), Expect = 8e-05
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 75  TKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNN 134
           T+L  L L  NQL          L  L+ L++  N LT  +P  I  L+ L++L L  N 
Sbjct: 88  TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146

Query: 135 L 135
           L
Sbjct: 147 L 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 39.7 bits (93), Expect = 9e-05
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 18  LPPNFCNHLSNLESLFLKNNMFHGKIPS----TLSNCKRLRNISLSLDDFSGTIPKEIGN 73
           LP    + L+ L  L L  N     +PS     L + K L    +  +  +  +P+ I  
Sbjct: 79  LPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKEL---FMCCNKLT-ELPRGIER 133

Query: 74  VTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNN 109
           +T L  L L  NQL+         L+ L   +L  N
Sbjct: 134 LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 37/121 (30%), Positives = 52/121 (42%), Gaps = 28/121 (23%)

Query: 18  LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKL 77
           L     + L+ L +L L NN                   SL L  F           T+L
Sbjct: 74  LSAGVFDDLTELGTLGLANNQLA----------------SLPLGVFDHL--------TQL 109

Query: 78  IRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIFN-LSSLSNLDLSVNNL 135
            +LYL GNQL+  +P  +   L +L+ L L  N L  +IP+  F+ L++L  L LS N L
Sbjct: 110 DKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167

Query: 136 T 136
            
Sbjct: 168 Q 168

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.8 bits (101), Expect = 7e-06
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 54  RNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR 113
             + L     +         +TKL  L L  NQLQ        +L EL  L L NN L  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 114 AIPSSIF-NLSSLSNLDLSVNNLT 136
           ++P  +F +L+ L  L L  N L 
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLK 120

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 39.7 bits (93), Expect = 9e-05
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 66  TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN-LSS 124
           ++P  I   T+  +L L+   L          L +L  L L  N L   + + +F+ L+ 
Sbjct: 28  SVPSGIPADTE--KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTE 84

Query: 125 LSNLDLSVNNLT 136
           L  L L+ N L 
Sbjct: 85  LGTLGLANNQLA 96

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 8/142 (5%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP--STLSNCKRLRNISL 58
           +S +  I   N      + P+    L  L+ L + N       P  + + +      + +
Sbjct: 79  LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEI 137

Query: 59  SLDDFSGTIPKEI--GNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP 116
           + + +  +IP     G   + + L L  N     +     N  +L+ ++L  N     I 
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVID 196

Query: 117 SSIFN--LSSLSNLDLSVNNLT 136
              F    S  S LD+S  ++T
Sbjct: 197 KDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 5/118 (4%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI-GNVTKLIRLYLRG 84
             + ++L L             SN   +  I +S+D     +      N++K+  + +R 
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 85  NQLQGEIPEE-LGNLAELEMLWLQNNFLTRAIP--SSIFNLSSLSNLDLSVNNLTGSL 139
            +    I  + L  L  L+ L + N  L    P  + +++      L+++ N    S+
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSI 146

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 22/141 (15%), Positives = 55/141 (39%), Gaps = 8/141 (5%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPS-TLSNCKRLRNISLSL 60
            S  +++     L   +P +  ++L N+  +++  ++   ++ S +  N  ++ +I +  
Sbjct: 31  PSTQTLKLIETHL-RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 61  DDFSGTIPKEI-GNVTKLIRLYLRGNQLQGEIPEE--LGNLAELEMLWLQNNFLTRAIPS 117
                 I  +    +  L  L +    L+   P+   + +     +L + +N    +IP 
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 118 SIFN--LSSLSNLDLSVNNLT 136
           + F    +    L L  N  T
Sbjct: 149 NAFQGLCNETLTLKLYNNGFT 169

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 66  TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN-LSS 124
            +PKE+ N   L  + L  N++     +   N+ +L  L L  N L   IP   F+ L S
Sbjct: 45  LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CIPPRTFDGLKS 103

Query: 125 LSNLDLSVNNL 135
           L  L L  N++
Sbjct: 104 LRLLSLHGNDI 114

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)

Query: 67  IPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSL 125
           +PK I        LYL GNQ    +P+EL N   L ++ L NN ++  + +  F N++ L
Sbjct: 25  LPKGIPRDVT--ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQL 80

Query: 126 SNLDLSVNNLT 136
             L LS N L 
Sbjct: 81  LTLILSYNRLR 91

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 19/125 (15%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNV----------- 74
            + L+     ++    ++P    N K       +  ++    P   G             
Sbjct: 10  NTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 75  --TKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSV 132
              +   L L    L   +PE   +   LE L    N LT  +P    +L SL   + ++
Sbjct: 69  LDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLTE-LPELPQSLKSLLVDNNNL 123

Query: 133 NNLTG 137
             L+ 
Sbjct: 124 KALSD 128

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 9/115 (7%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
             +LE +   NN    +    L N   L  I    +     +P    +   L  +    N
Sbjct: 172 PPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNN 225

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC 140
            L  E   EL NL  L  ++  NN L   +P    +L +L+  D  + +L     
Sbjct: 226 IL--EELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQ 277

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 14/111 (12%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
             +LESL    N    ++P    + K L   + +L   S   P        L  L +  N
Sbjct: 90  PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNN 141

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           QL+ ++PE L N + L+++ + NN L + +P       SL  +    N L 
Sbjct: 142 QLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE 186

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 12/120 (10%)

Query: 20  PNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIR 79
           P   N L  L +++  NN    K+P    + + +        +       E+ N+  L  
Sbjct: 189 PELQN-LPFLTAIYADNNSLK-KLPDLPLSLESI-----VAGNNILEELPELQNLPFLTT 241

Query: 80  LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL 139
           +Y   N L+  +P+   +L   E L +++N+LT  +P    +L+ L   +   + L+   
Sbjct: 242 IYADNNLLK-TLPDLPPSL---EALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELP 296

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 34/148 (22%)

Query: 17  ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSN-------------CKRLRNISLSLDDF 63
           E+P    N + +    +   + +    P                   ++   + L+    
Sbjct: 25  EMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83

Query: 64  SGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPS------ 117
           S ++P+   +   L  L    N L  E+PE   +L  L +       L+   P       
Sbjct: 84  S-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGV 138

Query: 118 ---------SIFNLSSLSNLDLSVNNLT 136
                     + N S L  +D+  N+L 
Sbjct: 139 SNNQLEKLPELQNSSFLKIIDVDNNSLK 166

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 14/113 (12%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
           +   +LES+   NN+   +    L N   L  I    +    T+P    +   L  L +R
Sbjct: 212 DLPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LEALNVR 265

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
            N L  ++PE   +L  L++     + L+   P       +L  L+ S N + 
Sbjct: 266 DNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIR 310

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 17/111 (15%), Positives = 41/111 (36%), Gaps = 13/111 (11%)

Query: 26  LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGN 85
             NL+ L ++ N    + P    + +      L ++     +P+   N   L +L++  N
Sbjct: 356 PQNLKQLHVEYNPLR-EFPDIPESVE-----DLRMNSHLAEVPELPQN---LKQLHVETN 406

Query: 86  QLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
            L+ E P+   ++   E L + +  +      +      L +     ++  
Sbjct: 407 PLR-EFPDIPESV---EDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 27/144 (18%), Positives = 43/144 (29%), Gaps = 12/144 (8%)

Query: 2   SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNN-------MFHGKIPSTLSNCKRLR 54
             L  +                     L +L L +N       +     P      + L 
Sbjct: 149 PGLKVLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 55  NISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTR 113
             +  ++  SG          +L  L L  N L+           ++L  L L    L +
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

Query: 114 AIPSSIFNLSSLSNLDLSVNNLTG 137
            +P  +   + LS LDLS N L  
Sbjct: 268 -VPKGLP--AKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 29/151 (19%), Positives = 49/151 (32%), Gaps = 12/151 (7%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCN-HLSNLESLFLKNNMFHG--KIPSTLSNC--KRLRN 55
           +S L  +   N  + G  PP        +L  L L+N  +       + L       L+ 
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 56  ISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEI-------PEELGNLAELEMLWLQN 108
           +S++         +++     L  L L  N   GE        P +   L  L +     
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 109 NFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL 139
              +    +       L  LDLS N+L  + 
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 17/61 (27%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 75  TKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSV 132
           + +  L L  N+++ EI  ++   L +L+ L L +N ++  +    F +L+SL++L+L+ 
Sbjct: 78  SHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLAS 135

Query: 133 N 133
           N
Sbjct: 136 N 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 75  TKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIFN-LSSLSNLDLSV 132
             L++L L+ NQL   I        + ++ L L  N +   I + +F  L  L  L+L  
Sbjct: 54  PHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYD 111

Query: 133 NNLT 136
           N ++
Sbjct: 112 NQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 67  IPKEIGNVTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSS 124
           IP++I   T    L L  N+L     + L G L  L  L L+ N LT  I  + F   S 
Sbjct: 23  IPRDIPLHTT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASH 79

Query: 125 LSNLDLSVNNLT 136
           +  L L  N + 
Sbjct: 80  IQELQLGENKIK 91

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 54  RNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR 113
             + L  +            +T L +LYL GN+LQ         L  L  L L  N L  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ- 89

Query: 114 AIPSSIFN-LSSLSNLDLSVNNLT 136
           ++P+ +F+ L+ L  L L+ N L 
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQ 113

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 9e-06
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 75  TKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSV 132
           T+L  L L  NQLQ  +P+ +   L +L+ L L  N L +++P  +F  L+SL  + L  
Sbjct: 100 TQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHD 157

Query: 133 N 133
           N
Sbjct: 158 N 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 67  IPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN-LSSL 125
           +P  I   T    L L  N L+         L  L  L+L  N L  ++P+ +FN L+SL
Sbjct: 22  VPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSL 78

Query: 126 SNLDLSVNNLT 136
           + L+LS N L 
Sbjct: 79  TYLNLSTNQLQ 89

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 6e-06
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
           + L   + L L  N    KI S+LS  + LR +SL  +     I         L  L++ 
Sbjct: 45  STLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWIS 101

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNL 128
            NQ+       +  L  L +L++ NN +T      I  L++L  L
Sbjct: 102 YNQI--ASLSGIEKLVNLRVLYMSNNKITN--WGEIDKLAALDKL 142

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.0 bits (100), Expect = 7e-06
 Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 18/134 (13%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTL--SNCKRLRNISLSL---DDFSGTIPKEI------GN 73
              NL+SL + +      +   +  S+   L  + L +   D                  
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250

Query: 74  VTKLIRLYLRGNQLQGEIPEELGN---LAELEMLWLQNNFLT----RAIPSSIFNLSSLS 126
              L  L +   + Q  + E       L +LE + +    LT    R +   +  +  L 
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310

Query: 127 NLDLSVNNLTGSLC 140
            +++  N L+  + 
Sbjct: 311 FINMKYNYLSDEMK 324

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 33/120 (27%), Positives = 46/120 (38%), Gaps = 16/120 (13%)

Query: 24  NHLSNLESLFLKNN------MFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKL 77
            +L N+  L L  N               L+N   L      L      +  ++   T L
Sbjct: 60  QYLPNVRYLALGGNKLHDISALKE-----LTNLTYLILTGNQLQSLPNGVFDKL---TNL 111

Query: 78  IRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLT 136
             L L  NQLQ         L  L  L L +N L  ++P  +F  L++L+ LDLS N L 
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ 170

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 75  TKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSV 132
           T L  L L  NQLQ  +PE +   L +L+ L L  N L +++P  +F  L+SL  + L  
Sbjct: 157 TNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHD 214

Query: 133 N 133
           N
Sbjct: 215 N 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 58  LSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELG---NLAELEMLWLQNNFLTRA 114
           +  ++      + I  +  +  L L GN+L      ++     L  L  L L  N L  +
Sbjct: 46  IIANNSDIKSVQGIQYLPNVRYLALGGNKLH-----DISALKELTNLTYLILTGNQLQ-S 99

Query: 115 IPSSIFN-LSSLSNLDLSVNNLT 136
           +P+ +F+ L++L  L L  N L 
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQ 122

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 75  TKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN-LSSLSNLDLSVN 133
           T L  L L  NQLQ         L  L  L L  N L  ++P  +F+ L+ L +L L  N
Sbjct: 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQN 191

Query: 134 NL 135
            L
Sbjct: 192 QL 193

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.9 bits (99), Expect = 9e-06
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 79  RLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNL 135
           RL+L  NQ+    P    +L  L+ L+  +N LT AIP+ +F  L+ L+ LDL+ N+L
Sbjct: 37  RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHL 93

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 39.2 bits (92), Expect = 9e-05
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 75  TKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSV 132
             L +LY   N+L   IP  +   L +L  L L +N L ++IP   F NL SL+++ L  
Sbjct: 57  VNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYN 114

Query: 133 N 133
           N
Sbjct: 115 N 115

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 75  TKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVN 133
           T+L +L L  NQ+Q         L +L +L+L  N L  ++P+ +F  L+ L  L L  N
Sbjct: 52  TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTN 110

Query: 134 NL 135
            L
Sbjct: 111 QL 112

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 75  TKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSV 132
           TKL  LYL  N+LQ  +P  +   L +L+ L L  N L +++P  IF  L+SL  + L  
Sbjct: 76  TKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHT 133

Query: 133 N 133
           N
Sbjct: 134 N 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 79  RLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN-LSSLSNLDLSVNNLT 136
           RL L  N+LQ         L +L  L L  N +  ++P  +F+ L+ L+ L L  N L 
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ 89

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 79  RLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFN-LSSLSNLDLSVNNL 135
            LYL  NQ+    P     L +L  L L NN LT  +P+ +F+ L+ L+ L L+ N L
Sbjct: 34  VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQL 90

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 39.9 bits (94), Expect = 5e-05
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 75  TKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSV 132
           T+L RL L  NQL   +P  +   L +L  L L +N L ++IP   F NL SL+++ L  
Sbjct: 54  TQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLN 111

Query: 133 N 133
           N
Sbjct: 112 N 112

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 14/119 (11%)

Query: 21  NFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS---LDDFSGTIPKEIGNVTKL 77
                LSNL+ L+L  N       S L+    L+ +S+    + D +      + N++KL
Sbjct: 123 TPLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTP-----LANLSKL 175

Query: 78  IRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
             L    N++       L +L  L  + L+NN ++    S + N S+L  + L+   +T
Sbjct: 176 TTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 10/114 (8%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNI-SLSLDDFSGTIPKEIGNVTKLIRLYL 82
            +L+NL  L LK+N    +I + L+  K L  I  L L          I  +  +  L L
Sbjct: 60  QYLNNLIGLELKDN----QI-TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL 114

Query: 83  RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
              Q+    P  L  L+ L++L+L  N +T    S +  L++L  L +    ++
Sbjct: 115 TSTQITDVTP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVS 164

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 8/113 (7%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
            +L NL  LFL  N     + S+L + K+L+++SL  +  S      + ++ +L  LYL 
Sbjct: 87  ANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLG 142

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
            N++       L  L +L+ L L++N ++      +  L+ L NL LS N+++
Sbjct: 143 NNKI--TDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHIS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 12/116 (10%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS---LDDFSGTIPKEIGNVTKLIRL 80
            HL  LESL+L NN       + LS   +L  +SL    + D        +  +TKL  L
Sbjct: 131 VHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNL 183

Query: 81  YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           YL  N +       L  L  L++L L +        +   NL   + +  +  +L 
Sbjct: 184 YLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 14/115 (12%)

Query: 25  HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS---LDDFSGTIPKEIGNVTKLIRLY 81
           +L N+  LFL  N         L+N K L  + L    + D S      + ++ KL  L 
Sbjct: 66  YLPNVTKLFLNGN--KLTDIKPLANLKNLGWLFLDENKVKDLSS-----LKDLKKLKSLS 118

Query: 82  LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
           L  N +       L +L +LE L+L NN +T    + +  L+ L  L L  N ++
Sbjct: 119 LEHNGI--SDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS 169

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 7e-05
 Identities = 33/169 (19%), Positives = 53/169 (31%), Gaps = 59/169 (34%)

Query: 12  NTLFGELPPNFC---NHLSNLESLF------LKNNMFHGKIPSTL--------------- 47
             L  ++ PN+    +H SN++         L+  +      + L               
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 48  -SNCKRL---RNISLSLDDFSGTIPKEI------GNVTK-----LIRLYLRGNQLQGEIP 92
             +CK L   R   ++ D  S      I        +T      L+  YL  +    ++P
Sbjct: 263 NLSCKILLTTRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQDLP 319

Query: 93  EE--------LGNLAEL--EML-----WLQNNF--LTRAIPSSIFNLSS 124
            E        L  +AE   + L     W   N   LT  I SS+  L  
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 8e-05
 Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 43/152 (28%)

Query: 3   SLLSIRFTNNTLFGELPPNFCNHLSNLESLF---LKNNMFHGKIPSTLSN-----CKRLR 54
           SLL  ++ +     +LP           S+    +++        +T  N     C +L 
Sbjct: 305 SLLL-KYLDCR-PQDLPREVLTTNPRRLSIIAESIRDG------LATWDNWKHVNCDKLT 356

Query: 55  N-ISLSLDDFSGTIPKEIGNVTKLIRLY-----LRGNQLQGEIPEELGNLAELEMLWLQN 108
             I  SL+      P E        +++        +     IP  L     L ++W   
Sbjct: 357 TIIESSLNVLE---PAE------YRKMFDRLSVFPPSAH---IPTIL-----LSLIWFD- 398

Query: 109 NFLTRAIPSSIFN-LSSLSNLDLSVNNLTGSL 139
             + ++    + N L   S ++      T S+
Sbjct: 399 --VIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 9/113 (7%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR 83
             L+ LE L +  N    ++   L+         L LD+        + ++  L  L +R
Sbjct: 82  KDLTKLEELSVNRN----RL-KNLNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIR 136

Query: 84  GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
            N+L  +    LG L++LE+L L  N +T      +  L  ++ +DL+     
Sbjct: 137 NNKL--KSIVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 47  LSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWL 106
            +N  R R + L        I      + +   +    N+++ ++ +    L  L+ L +
Sbjct: 15  YTNAVRDRELDLR-GYKIPVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLV 71

Query: 107 QNNFLTRAIPSSIFNLSSLSNLDLSVNNLT 136
            NN + R        L  L+ L L+ N+L 
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 36.6 bits (85), Expect = 8e-04
 Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 10/117 (8%)

Query: 24  NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS---LDDFSGTIPKEIGNVTKLIRL 80
            +      L L+       I +  +   +   I  S   +    G        + +L  L
Sbjct: 16  TNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKLDG-----FPLLRRLKTL 69

Query: 81  YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR-AIPSSIFNLSSLSNLDLSVNNLT 136
            +  N++          L +L  L L NN L        + +L SL+ L +  N +T
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	140
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.86
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.86
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.85
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.85
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.85
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.85
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.85
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.82
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.82
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.82
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.82
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.81
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.81
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.81
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.8
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.8
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.8
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.8
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.8
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.8
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.79
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.79
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.79
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.79
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.78
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.78
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.78
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.78
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.77
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.77
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.77
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.77
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.77
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.77
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.75
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.75
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.75
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.75
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.75
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.74
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.74
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.74
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.73
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.73
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.73
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.73
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.72
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.71
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.71
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.71
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.71
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.71
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.71
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.71
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.7
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.7
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.7
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.69
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.67
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.66
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.66
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.65
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.65
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.65
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.63
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.62
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.61
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.6
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.59
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.59
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.59
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.59
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.59
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.57
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.56
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.55
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.55
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.51
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.5
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.5
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.49
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.49
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.48
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.48
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.43
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.43
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.39
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.34
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.34
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.28
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.26
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.17
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.16
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.02
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.0
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.9
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.85
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.85
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.84
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.81
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.75
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.65
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.55
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.35
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.33
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.28
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.13
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.1
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.01
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.97
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.55
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.47
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.28
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	84.48

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.88  E-value=7.5e-22  Score=124.83  Aligned_cols=136  Identities=21%  Similarity=0.253  Sum_probs=122.1

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   82 (140)
                      .+++|++++|.+.+..+...+..+++|+.|++++|.+++..+..|..+++|+.|++++|.++...+..+..+++|+.|++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            57889999999875556666688999999999999999777778999999999999999999777778999999999999


Q ss_pred             cCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  138 (140)
                      ++|++.+..+..+..+++|+++++++|.++...+..+..+++|+.|++++|++..+
T Consensus       113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            99999988788899999999999999999988889999999999999999998654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.88  E-value=7.6e-22  Score=143.83  Aligned_cols=91  Identities=38%  Similarity=0.592  Sum_probs=70.2

Q ss_pred             CCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEE
Q 032459           50 CKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLD  129 (140)
Q Consensus        50 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~  129 (140)
                      ++.|+.+++++|.+++..|..++.++.|+.|++++|.+.+..|..+..+++|+++++++|.+++..|..+..+++|++++
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  710 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID  710 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence            34566677777777666777777777788888888887777777777788888888888888777788888888888888


Q ss_pred             cCCCccceecC
Q 032459          130 LSVNNLTGSLC  140 (140)
Q Consensus       130 l~~n~~~~~~~  140 (140)
                      +++|.++|.||
T Consensus       711 ls~N~l~g~iP  721 (768)
T 3rgz_A          711 LSNNNLSGPIP  721 (768)
T ss_dssp             CCSSEEEEECC
T ss_pred             CcCCcccccCC
Confidence            88888888776

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=1.9e-21  Score=125.14  Aligned_cols=136  Identities=24%  Similarity=0.246  Sum_probs=87.3

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++|++|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus        59 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  137 (251)
T 3m19_A           59 TKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR  137 (251)
T ss_dssp             TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence            45666666666654 33433345566666666666666654445556666677777777766644444556667777777


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  138 (140)
                      +++|.+.+..+..+..+++|+++++++|.++...+..+..+++|+.+++++|++..+
T Consensus       138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            777777655445566677777777777777655555666777777777777776554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=2.4e-21  Score=125.98  Aligned_cols=138  Identities=24%  Similarity=0.253  Sum_probs=101.1

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.+
T Consensus        84 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  162 (272)
T 3rfs_A           84 LTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL  162 (272)
T ss_dssp             CTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence            356777777777764 4555545667778888888887775555556777788888888887775555566777888888


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceec
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL  139 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  139 (140)
                      ++++|.+.+..+..+..+++|+++++++|.+++..+..+..+++|+.+++++|++.+..
T Consensus       163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  221 (272)
T 3rfs_A          163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  221 (272)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             ECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC
Confidence            88888877655566677788888888888887766666777888888888888776654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=4.6e-21  Score=120.12  Aligned_cols=138  Identities=22%  Similarity=0.235  Sum_probs=119.9

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      +++++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|+.++
T Consensus        28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            57899999999986 67776668899999999999999966666678899999999999999866666788999999999


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceecC
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC  140 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  140 (140)
                      +++|.+.+..+..+..+++|+++++++|.+++..+..+..+++|+.+++++|++.+..|
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence            99999986666678889999999999999987766778899999999999998876543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.87  E-value=2.1e-21  Score=122.77  Aligned_cols=135  Identities=19%  Similarity=0.272  Sum_probs=120.4

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++++.|++++|.+. .++...+..+++|++|++++|.++...|..|..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus        32 ~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence            46899999999985 56665668899999999999999988889999999999999999999966556678899999999


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      +++|.+.+..+..+..+++|+++++++|.++...+..+..+++|+.+++++|++..
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            99999998878889999999999999999998777888999999999999998753

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.87  E-value=1.5e-21  Score=129.26  Aligned_cols=138  Identities=24%  Similarity=0.424  Sum_probs=110.0

Q ss_pred             CCceEEEccCCeecc--cCCcccccCCCcccEEEccC-CccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCcc
Q 032459            2 SSLLSIRFTNNTLFG--ELPPNFCNHLSNLESLFLKN-NMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLI   78 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   78 (140)
                      .+++.|+++++.+.+  .+|..+ ..+++|++|++++ |.+.+..|..+..+++|++|++++|.+++..|..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            467788888888876  677665 6688888888884 788777888888888888888888888767777788888888


Q ss_pred             EEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCC-CCCeEEcCCCccceecC
Q 032459           79 RLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLS-SLSNLDLSVNNLTGSLC  140 (140)
Q Consensus        79 ~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~L~~l~l~~n~~~~~~~  140 (140)
                      ++++++|.+.+..|..+..+++|+++++++|.+++..|..++.++ +|+.|++++|.+++.+|
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~  191 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP  191 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC
Confidence            888888888877777788888888888888888777777777776 78888888887776654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.87  E-value=2.6e-21  Score=141.03  Aligned_cols=138  Identities=37%  Similarity=0.567  Sum_probs=93.2

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++|+.|++++|.+.+.+|..+ ..+++|++|++.+|.+++..|..+..+++|+.|++++|.+++..|..+..+++|+.++
T Consensus       418 ~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  496 (768)
T 3rgz_A          418 SELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS  496 (768)
T ss_dssp             TTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             CCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEE
Confidence            455666666666555555444 4566666666666666666666666666666777766666666666666677777777


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceecC
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC  140 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  140 (140)
                      +++|++.+..|..+..+++|+++++++|.+++..|..+..+++|+.+++++|.++|.+|
T Consensus       497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip  555 (768)
T 3rgz_A          497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP  555 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred             ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence            77777776667777777777777777777776777777777777777777777776665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=1.5e-21  Score=129.98  Aligned_cols=137  Identities=26%  Similarity=0.326  Sum_probs=86.4

Q ss_pred             CCceEEEccCCeecccCCcccc--------cCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhcc
Q 032459            2 SSLLSIRFTNNTLFGELPPNFC--------NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGN   73 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~--------~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~   73 (140)
                      ++|++|++++|...+.+|..+.        ..+++|++|++++|.++ .+|..+..+++|+.|++++|.++ ..|..+..
T Consensus       150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~  227 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH  227 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGG
T ss_pred             cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhcc
Confidence            4455555555444444444431        23555666666666555 55555666666666666666666 34555666


Q ss_pred             CCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceecC
Q 032459           74 VTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC  140 (140)
Q Consensus        74 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  140 (140)
                      +++|+.|++++|.+.+..|..+..+++|+++++++|.+.+..|..+..+++|+.|++++|.+.+.+|
T Consensus       228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred             CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence            6677777777766666666666667777777777777666667667777777777777777766665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.87  E-value=1.4e-21  Score=129.39  Aligned_cols=110  Identities=29%  Similarity=0.553  Sum_probs=49.9

Q ss_pred             CCceEEEccC-CeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            2 SSLLSIRFTN-NTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         2 ~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      ++|++|++++ +.+.+.+|..+ ..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|+.+
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence            3445555552 44444444443 344455555555544444444444444444444444444444444444444444444


Q ss_pred             EecCCcccccCChhccCCC-CCcEEeccccccc
Q 032459           81 YLRGNQLQGEIPEELGNLA-ELEMLWLQNNFLT  112 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~-~l~~l~l~~~~~~  112 (140)
                      ++++|.+.+..|..+..++ +|+++++++|.++
T Consensus       155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             ECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence            4444444434444444333 4444444444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=1.4e-20  Score=121.12  Aligned_cols=136  Identities=23%  Similarity=0.277  Sum_probs=118.6

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++++.|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus        35 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           35 ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY  113 (251)
T ss_dssp             TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence            46889999999986 45554458899999999999999987777888999999999999999976667888999999999


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  138 (140)
                      +++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.
T Consensus       114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A          114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             cCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            999999866666778899999999999999877777889999999999999988754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.86  E-value=1.4e-20  Score=119.63  Aligned_cols=135  Identities=21%  Similarity=0.275  Sum_probs=117.0

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++|+.|++++|.+.+ ++...+..+++|++|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus        40 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           40 TNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            578999999999964 4444458899999999999999855556678899999999999999966667788999999999


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  138 (140)
                      +++|++. ..|..+..+++|+++++++|.++...+..+..+++|+.+++++|++..+
T Consensus       119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            9999998 6688888999999999999999877667788999999999999988643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.86  E-value=2.9e-20  Score=120.70  Aligned_cols=133  Identities=27%  Similarity=0.353  Sum_probs=57.4

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++|++|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus        61 ~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  139 (270)
T 2o6q_A           61 TKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS  139 (270)
T ss_dssp             TTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence            34444455444442 33433334444444555444444433333334444444444444444433333344444444444


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (140)
                      +++|.+.+..+..+..+++|+.+++++|.++...+..+..+++|+.|++++|.+
T Consensus       140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (270)
T 2o6q_A          140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL  193 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence            444444433223334444444444444444433333344444444444444433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.85  E-value=1.2e-20  Score=130.09  Aligned_cols=138  Identities=22%  Similarity=0.217  Sum_probs=123.6

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++|+.|++++|.+.+..+..+ ..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVF-SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             cCceEEEecCccccccchhhc-ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence            478999999999875555544 7899999999999999988888999999999999999999877788889999999999


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceecC
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC  140 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  140 (140)
                      +++|.+.+..+..+..+++|+++++++|.+++..+..+..+++|+.|++++|+++++.|
T Consensus       354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            99999998888889999999999999999997766778899999999999999988765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.85  E-value=2e-20  Score=122.27  Aligned_cols=112  Identities=22%  Similarity=0.311  Sum_probs=44.8

Q ss_pred             cCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcE
Q 032459           24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM  103 (140)
Q Consensus        24 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~  103 (140)
                      ..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.+++++|.+.+..+..+..+++|++
T Consensus       102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  181 (285)
T 1ozn_A          102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR  181 (285)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCE
Confidence            33444444444444444333333334444444444444443222233333444444444444443222223333344444


Q ss_pred             EecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459          104 LWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus       104 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (140)
                      +++++|.+++..+..+..+++|+.|++++|.+
T Consensus       182 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  213 (285)
T 1ozn_A          182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL  213 (285)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcccccCHhHccCcccccEeeCCCCcC
Confidence            44444444333333344444444444444433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.85  E-value=2.1e-20  Score=124.53  Aligned_cols=134  Identities=22%  Similarity=0.291  Sum_probs=69.0

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcC---------CCCCCEEEeeccccccCcchhhcc
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSN---------CKRLRNISLSLDDFSGTIPKEIGN   73 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~---------~~~L~~l~l~~~~~~~~~~~~~~~   73 (140)
                      +|++|++++|.+. .+|..+ ..+++|++|++++|.+.+.+|..+..         +++|+.|++++|.++ ..|..+..
T Consensus       128 ~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~  204 (328)
T 4fcg_A          128 GLETLTLARNPLR-ALPASI-ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN  204 (328)
T ss_dssp             TCSEEEEESCCCC-CCCGGG-GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG
T ss_pred             CCCEEECCCCccc-cCcHHH-hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC
Confidence            3444444444432 333332 33444444444444433344433322         444555555555444 44445555


Q ss_pred             CCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceecC
Q 032459           74 VTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC  140 (140)
Q Consensus        74 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  140 (140)
                      +++|+.|++++|.+.+ .|..+..+++|+++++++|.+.+..|..+..+++|+.|++++|.+.+.+|
T Consensus       205 l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p  270 (328)
T 4fcg_A          205 LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP  270 (328)
T ss_dssp             CTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred             CCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence            5566666666666552 34445556666666666666655566666666666666666666555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.85  E-value=3.3e-20  Score=122.28  Aligned_cols=136  Identities=20%  Similarity=0.196  Sum_probs=63.2

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecccccc-CcchhhccCCCccEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSG-TIPKEIGNVTKLIRL   80 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l   80 (140)
                      ++|++|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++. ..|..+..+++|+.+
T Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  180 (306)
T 2z66_A          101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  180 (306)
T ss_dssp             TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence            4455555555555322221223445555555555555544444444445555555555554442 234444444455555


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      ++++|.+.+..+..+..+++|+++++++|.+++..+..+..+++|+.|++++|.+++
T Consensus       181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred             ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence            555554444434444444445555555544443333334444444444444444433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=5.4e-20  Score=119.62  Aligned_cols=136  Identities=22%  Similarity=0.240  Sum_probs=114.2

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++|+.|++++|.+.+ ++ . +..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.+
T Consensus        62 l~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  138 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHD-IS-A-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL  138 (272)
T ss_dssp             CTTCCEEECTTSCCCC-CG-G-GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEECCCCCCCC-ch-h-hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence            4788899999998753 33 3 3678999999999999987666677889999999999999986666678889999999


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceec
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL  139 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  139 (140)
                      ++++|.+.+..+..+..+++|+++++++|.+++..+..+..+++|+.|++++|.+++..
T Consensus       139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (272)
T 3rfs_A          139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP  197 (272)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence            99999998666667788999999999999998777777888999999999999887643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.85  E-value=5.9e-20  Score=119.29  Aligned_cols=136  Identities=27%  Similarity=0.331  Sum_probs=120.3

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++|++|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.+
T Consensus        84 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  162 (270)
T 2o6q_A           84 LKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL  162 (270)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence            478999999999985 6777777889999999999999997777788899999999999999996666678899999999


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      ++++|.+....+..+..+++|+++++++|.++...+..+..+++|+.+++++|++..
T Consensus       163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            999999987766778889999999999999987766778889999999999998754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.85  E-value=5.4e-20  Score=120.19  Aligned_cols=136  Identities=24%  Similarity=0.265  Sum_probs=68.0

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCc-cccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNM-FHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      ++|++|++++|.+.+..+. .+..+++|++|++++|. +....+..+..+++|+.|++++|.++...+..+..+++|+.+
T Consensus        56 ~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  134 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL  134 (285)
T ss_dssp             TTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence            3444444444444322122 22444555555555554 443334444445555555555555544434445555555555


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  138 (140)
                      ++++|.+.+..+..+..+++|+++++++|.++...+..+..+++|+.|++++|.+++.
T Consensus       135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (285)
T 1ozn_A          135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (285)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             ECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence            5555555543334455555566666666655544444455566666666666655543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.84  E-value=4.3e-20  Score=131.45  Aligned_cols=136  Identities=19%  Similarity=0.200  Sum_probs=119.9

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      +++++|++++|.+. .++...|..+++|++|++++|.++...+..|..+++|++|++++|+++...+..|..+++|+.|+
T Consensus        52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            36899999999985 67776678999999999999999977778899999999999999999866667889999999999


Q ss_pred             ecCCcccccCChhccCCCCCcEEeccccccccc-CcccccCCCCCCeEEcCCCcccee
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA-IPSSIFNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~  138 (140)
                      +++|.+.+..+..+..+++|++|++++|.++.. .+..+..+++|+.|++++|.+++.
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence            999999866666788999999999999998754 567788999999999999988764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.84  E-value=7.5e-20  Score=113.41  Aligned_cols=131  Identities=21%  Similarity=0.309  Sum_probs=115.6

Q ss_pred             eEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCc-CCcCCCCCCEEEeeccccccCcchhhccCCCccEEEec
Q 032459            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPS-TLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR   83 (140)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   83 (140)
                      +.++++++.+ +.+|..+   ...+++|++++|.+++..+. .+..+++|+.|++++|.+++..|..+..+++|+.|+++
T Consensus        11 ~~l~~s~~~l-~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGL-KEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCC-SSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCc-CcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            5688999988 5888876   34899999999999855554 47889999999999999997778899999999999999


Q ss_pred             CCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceec
Q 032459           84 GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL  139 (140)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  139 (140)
                      +|++.+..+..+..+++|+++++++|.+++..+..+..+++|+.+++++|++.++.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            99999877788889999999999999999888899999999999999999987653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=7.6e-20  Score=120.52  Aligned_cols=137  Identities=19%  Similarity=0.234  Sum_probs=120.9

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCcccc-CCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG-KIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIR   79 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   79 (140)
                      +++|+.|++++|.+.+..+.. +..+++|++|++++|.+++ ..|..+..+++|+.|++++|.++...+..+..+++|+.
T Consensus       125 l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  203 (306)
T 2z66_A          125 LRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  203 (306)
T ss_dssp             CTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             ccCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence            478999999999986554444 4789999999999999986 57888899999999999999999777888999999999


Q ss_pred             EEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCC-CCCeEEcCCCcccee
Q 032459           80 LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLS-SLSNLDLSVNNLTGS  138 (140)
Q Consensus        80 l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~L~~l~l~~n~~~~~  138 (140)
                      +++++|.+.+..+..+..+++|+++++++|.+++..+..+..++ +|+.|++++|+++++
T Consensus       204 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             EECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             EECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            99999999877677788899999999999999988888888885 999999999998754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.83  E-value=7.8e-20  Score=111.00  Aligned_cols=133  Identities=25%  Similarity=0.186  Sum_probs=114.6

Q ss_pred             CCceEEEccCCeec-ccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            2 SSLLSIRFTNNTLF-GELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         2 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      ++|+.|++++|.+. +.+|..+ ..+++|++|++++|.+++.  ..+..+++|+.|++++|.++...|..+..+++|+.+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCC-GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHH-HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            67999999999986 5777764 7799999999999999854  778889999999999999996677777789999999


Q ss_pred             EecCCcccccC-ChhccCCCCCcEEecccccccccCc---ccccCCCCCCeEEcCCCccce
Q 032459           81 YLRGNQLQGEI-PEELGNLAELEMLWLQNNFLTRAIP---SSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        81 ~l~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~---~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      ++++|.+.+.. +..+..+++|+++++++|.+++..+   ..+..+++|+.|++++|.+.+
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            99999998543 2678889999999999999986655   478899999999999987643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.83  E-value=8.7e-20  Score=128.80  Aligned_cols=140  Identities=19%  Similarity=0.184  Sum_probs=120.4

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccc-cCcchhhccCCCccE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS-GTIPKEIGNVTKLIR   79 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~   79 (140)
                      +++|+.|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++ ...|..+..+++|+.
T Consensus       395 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~  474 (570)
T 2z63_A          395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  474 (570)
T ss_dssp             CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence            4678888888888876556555678899999999999998888888888999999999999886 457788888999999


Q ss_pred             EEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceecC
Q 032459           80 LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC  140 (140)
Q Consensus        80 l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  140 (140)
                      +++++|.+.+..|..+..+++|+++++++|.+++..+..+..+++|+.+++++|+++++.|
T Consensus       475 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             EECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            9999999987778888899999999999999988777888899999999999999988754

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.83  E-value=1.8e-19  Score=117.27  Aligned_cols=136  Identities=19%  Similarity=0.200  Sum_probs=108.2

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      +++++|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.++
T Consensus        28 ~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            35888899988885 45554457788999999999988866666788888899999998888866667788888888888


Q ss_pred             ecCCcccccCChhccCCCCCcEEeccccccccc-CcccccCCCCCCeEEcCCCcccee
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA-IPSSIFNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~  138 (140)
                      +++|.+.+..+..+..+++|+++++++|.+++. .|..+..+++|+.|++++|.+++.
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence            888888766555677888888888888888763 477888888888888888877653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.82  E-value=3.1e-19  Score=111.00  Aligned_cols=129  Identities=21%  Similarity=0.210  Sum_probs=80.9

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++|++|++++|.+. .+ .. +..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.++
T Consensus        66 ~~L~~L~l~~n~~~-~~-~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~  142 (197)
T 4ezg_A           66 HNIKDLTINNIHAT-NY-NP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID  142 (197)
T ss_dssp             TTCSEEEEESCCCS-CC-GG-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred             CCCCEEEccCCCCC-cc-hh-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence            45666666666432 22 22 25567777777777777655666666777777777777777655566666777777777


Q ss_pred             ecCCc-ccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           82 LRGNQ-LQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        82 l~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      +++|. +. ..+ .+..+++|+++++++|.+++. + .+..+++|+.|++++|.+++
T Consensus       143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            77776 44 223 466677777777777777643 2 56667777777777777655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.82  E-value=1.3e-19  Score=128.92  Aligned_cols=135  Identities=23%  Similarity=0.173  Sum_probs=81.2

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecccccc-CcchhhccCCCccEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSG-TIPKEIGNVTKLIRL   80 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~l   80 (140)
                      ++|+.|++++|.+.+..+...+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++ ..|..+..+++|+.+
T Consensus       399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  478 (606)
T 3vq2_A          399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL  478 (606)
T ss_dssp             TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence            4566666666666544443334556666666666666665555556666666666666666654 245555566666666


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (140)
                      ++++|.+.+..|..+..+++|+++++++|.+++..|..+..+++|+.|++++|.++
T Consensus       479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             ECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            66666666555555666666666666666666555556666666666666666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.82  E-value=4.6e-19  Score=116.23  Aligned_cols=109  Identities=28%  Similarity=0.333  Sum_probs=48.1

Q ss_pred             CCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEe
Q 032459           26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLW  105 (140)
Q Consensus        26 l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~  105 (140)
                      +++|++|++++|.++ .+|..+..+++|+.|++++|.++...+..+..+++|+.|++++|++....+..+..+++|+.++
T Consensus        76 l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  154 (290)
T 1p9a_G           76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS  154 (290)
T ss_dssp             CTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence            334444444444443 3333444444444444444444433334444444444444444444433333334444444444


Q ss_pred             cccccccccCcccccCCCCCCeEEcCCCcc
Q 032459          106 LQNNFLTRAIPSSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus       106 l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (140)
                      +++|.++...+..+..+++|+.|++++|.+
T Consensus       155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l  184 (290)
T 1p9a_G          155 LANNNLTELPAGLLNGLENLDTLLLQENSL  184 (290)
T ss_dssp             CTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence            444444433333334444444444444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.82  E-value=1.3e-19  Score=107.97  Aligned_cols=128  Identities=24%  Similarity=0.215  Sum_probs=109.6

Q ss_pred             CCceEEEccCCeec-ccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            2 SSLLSIRFTNNTLF-GELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         2 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      ++++.|++++|.+. +.+|..+ ..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++..|..+..+++|+.+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            57899999999987 5777654 7899999999999999854  778889999999999999986677777789999999


Q ss_pred             EecCCccccc-CChhccCCCCCcEEecccccccccCc---ccccCCCCCCeEEcCC
Q 032459           81 YLRGNQLQGE-IPEELGNLAELEMLWLQNNFLTRAIP---SSIFNLSSLSNLDLSV  132 (140)
Q Consensus        81 ~l~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~~~~---~~~~~~~~L~~l~l~~  132 (140)
                      ++++|.+.+. .+..+..+++|+++++++|.+++..+   ..+..+++|+.|++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999999853 23778889999999999999987655   5788899999998863

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.82  E-value=2.3e-19  Score=121.82  Aligned_cols=135  Identities=24%  Similarity=0.277  Sum_probs=99.7

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++++.+++.++.+ +.+|..++..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus        45 ~~l~~l~l~~~~l-~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCch-hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            5677788888776 367777667778888888888887766666777778888888888877766666677778888888


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      +++|.+....+..+..+++|+++++++|.+++..+..+..+++|++|++++|.+++
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence            88887774433445677788888888887776666667777778888887776654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.82  E-value=2.7e-19  Score=120.52  Aligned_cols=135  Identities=25%  Similarity=0.277  Sum_probs=112.1

Q ss_pred             CCceEEEccCCeecccCCccccc-CCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCN-HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +.++.|++++|.+. .++...+. .+++|+.|++++|.++...+..|..+++|+.|++++|.++...+..+..+++|+.|
T Consensus        39 ~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  117 (361)
T 2xot_A           39 SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL  117 (361)
T ss_dssp             TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence            35788999999885 55555555 78999999999999997777788899999999999999986666778889999999


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccc---cCCCCCCeEEcCCCccce
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI---FNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~---~~~~~L~~l~l~~n~~~~  137 (140)
                      ++++|.+....+..+..+++|+.|++++|.++...+..+   ..+++|+.|++++|.+++
T Consensus       118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A          118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            999999987778888899999999999999986544545   568899999999998764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=6.7e-20  Score=114.81  Aligned_cols=132  Identities=22%  Similarity=0.322  Sum_probs=110.6

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.+
T Consensus        51 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  129 (208)
T 2o6s_A           51 LTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL  129 (208)
T ss_dssp             CTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEE
Confidence            478999999999985 6777777889999999999999996666667889999999999999996666678889999999


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceecC
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC  140 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  140 (140)
                      ++++|.+.+..+..+..+++|+++++++|++..       .+++++.+++..|.++|.+|
T Consensus       130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVR  182 (208)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBB
T ss_pred             ECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceee
Confidence            999999986666668889999999999998763       34567777777777766654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.81  E-value=4.8e-19  Score=125.97  Aligned_cols=136  Identities=24%  Similarity=0.244  Sum_probs=115.9

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      +++++|++++|.+. .++...+..+++|++|++++|.+++..|..|..+++|++|++++|.++...|..+..+++|+.|+
T Consensus        32 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  110 (606)
T 3vq2_A           32 SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV  110 (606)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred             CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence            46889999999885 45554457899999999999999877788888999999999999999877788899999999999


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccc-cCcccccCCCCCCeEEcCCCcccee
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTR-AIPSSIFNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~  138 (140)
                      +++|.+.+..+..+..+++|+++++++|.+++ ..|..++.+++|+.|++++|.+++.
T Consensus       111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A          111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence            99999886666778889999999999999876 4588899999999999999988764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.81  E-value=7.8e-19  Score=108.94  Aligned_cols=128  Identities=30%  Similarity=0.404  Sum_probs=112.4

Q ss_pred             eEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecC
Q 032459            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG   84 (140)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~   84 (140)
                      +.++++++.+. .+|..+   .+.+++|++++|.++ .+|..+..+++|+.|++++|.++...+..+..+++|+.|++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            46788888874 788765   368999999999998 7788899999999999999999977778899999999999999


Q ss_pred             CcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           85 NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        85 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      |++....+..+..+++|+++++++|.++...+..+..+++|+.+++++|++..
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            99997777889999999999999999987766778899999999999998753

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.81  E-value=1.2e-18  Score=114.36  Aligned_cols=133  Identities=25%  Similarity=0.233  Sum_probs=115.4

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++|+.|++++|.+. .+|..+ ..+++|++|++++|+++...+..|..+++|+.|++++|.++...+..+..+++|+.|
T Consensus        76 l~~L~~L~Ls~N~l~-~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  153 (290)
T 1p9a_G           76 LPVLGTLDLSHNQLQ-SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (290)
T ss_dssp             CTTCCEEECCSSCCS-SCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCcCCEEECCCCcCC-cCchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence            467888888888875 677655 779999999999999997666789999999999999999997666778889999999


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (140)
                      ++++|+++...+..+..+++|+++++++|.++ .+|..+...++|+.+++++|++.
T Consensus       154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            99999998655566788999999999999998 66777888889999999999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.81  E-value=1.1e-18  Score=106.83  Aligned_cols=132  Identities=25%  Similarity=0.247  Sum_probs=110.9

Q ss_pred             ceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEec
Q 032459            4 LLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR   83 (140)
Q Consensus         4 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   83 (140)
                      .+.++++++.+. .+|..+   .+.+++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.++++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            356788888774 677655   4789999999999996666677889999999999999986666677889999999999


Q ss_pred             CCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceec
Q 032459           84 GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL  139 (140)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  139 (140)
                      +|.+++..+..+..+++|+++++++|.+++..+..+..+++|+.+++++|++.+..
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            99999666667788999999999999998666666788999999999999987653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=1.2e-18  Score=110.18  Aligned_cols=130  Identities=25%  Similarity=0.300  Sum_probs=114.2

Q ss_pred             eEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecC
Q 032459            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG   84 (140)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~   84 (140)
                      +.++.+++.+ ..+|..+   .+.+++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.|++++
T Consensus        14 ~~v~c~~~~l-~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGL-TEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCC-SSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCc-CcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            3567777777 4778766   37899999999999977777899999999999999999977788999999999999999


Q ss_pred             CcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459           85 NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus        85 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  138 (140)
                      |.+....+..+..+++|+++++++|.++...+..+..+++|+.|++++|.+++.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  143 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI  143 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE
Confidence            999966556678899999999999999988888999999999999999988753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.80  E-value=1.9e-19  Score=128.94  Aligned_cols=121  Identities=18%  Similarity=0.342  Sum_probs=82.3

Q ss_pred             CCcccccCCCcccEEEccCCccccC-----------------CCcCCc--CCCCCCEEEeeccccccCcchhhccCCCcc
Q 032459           18 LPPNFCNHLSNLESLFLKNNMFHGK-----------------IPSTLS--NCKRLRNISLSLDDFSGTIPKEIGNVTKLI   78 (140)
Q Consensus        18 ~~~~~~~~l~~L~~L~l~~~~l~~~-----------------~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~   78 (140)
                      +|..+ ..+++|++|++++|.+++.                 +|..+.  .+++|++|++++|.+.+..|..+..+++|+
T Consensus       198 ip~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  276 (636)
T 4eco_A          198 VSKAV-MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ  276 (636)
T ss_dssp             ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred             CCHHH-hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence            55544 5577777777777777754                 666666  677777777777776666677777777777


Q ss_pred             EEEecCCc-ccc-cCChhccCC------CCCcEEecccccccccCcc--cccCCCCCCeEEcCCCccceecC
Q 032459           79 RLYLRGNQ-LQG-EIPEELGNL------AELEMLWLQNNFLTRAIPS--SIFNLSSLSNLDLSVNNLTGSLC  140 (140)
Q Consensus        79 ~l~l~~~~-~~~-~~~~~~~~~------~~l~~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~  140 (140)
                      .|++++|+ +.+ ..|..+..+      ++|+++++++|.++ .+|.  .++.+++|+.|++++|.++|.+|
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip  347 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP  347 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence            77777776 665 556555544      67777777777776 5555  66777777777777777766654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.80  E-value=8.6e-20  Score=120.75  Aligned_cols=136  Identities=23%  Similarity=0.246  Sum_probs=87.4

Q ss_pred             CCCceEEEccCCeecccCCcccc-cCCCcccEEEccCCccccCCCcCCcCC-----CCCCEEEeeccccccCcchhhccC
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFC-NHLSNLESLFLKNNMFHGKIPSTLSNC-----KRLRNISLSLDDFSGTIPKEIGNV   74 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~~~~~~-----~~L~~l~l~~~~~~~~~~~~~~~~   74 (140)
                      +++|++|++++|.+.+.+|..++ ..+++|++|++++|.+++. |..+..+     ++|+.|++++|.++...+..+..+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            35788888888888777777654 6678888888888888754 6555554     777778887777776555677777


Q ss_pred             CCccEEEecCCccccc--CChhc--cCCCCCcEEecccccccc---cCcccccCCCCCCeEEcCCCccce
Q 032459           75 TKLIRLYLRGNQLQGE--IPEEL--GNLAELEMLWLQNNFLTR---AIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        75 ~~L~~l~l~~~~~~~~--~~~~~--~~~~~l~~l~l~~~~~~~---~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      ++|+.+++++|++.+.  .+..+  ..+++|+++++++|.+++   .....+..+++|+.|++++|.+++
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  242 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD  242 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence            7777777777775432  12222  455666666666666652   111222345556666666665554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.80  E-value=7e-19  Score=114.44  Aligned_cols=135  Identities=22%  Similarity=0.293  Sum_probs=105.4

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++.+|.+....+..+..+++|+.+
T Consensus        51 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  129 (276)
T 2z62_A           51 FPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL  129 (276)
T ss_dssp             CTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred             ccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEE
Confidence            468899999999885 5555555788999999999999987777788889999999999998886655578888899999


Q ss_pred             EecCCccccc-CChhccCCCCCcEEecccccccccCcccccCCCCCC----eEEcCCCccc
Q 032459           81 YLRGNQLQGE-IPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLS----NLDLSVNNLT  136 (140)
Q Consensus        81 ~l~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~----~l~l~~n~~~  136 (140)
                      ++++|.+.+. .|..+..+++|+++++++|.+++..+..+..+++++    .+++++|.++
T Consensus       130 ~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~  190 (276)
T 2z62_A          130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN  190 (276)
T ss_dssp             ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCC
T ss_pred             ECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccc
Confidence            9999988754 477888889999999999988766555555444444    5555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=5.5e-19  Score=125.77  Aligned_cols=135  Identities=24%  Similarity=0.277  Sum_probs=96.0

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++++.+++.++.+ +.+|..++..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|+
T Consensus        51 ~~l~~l~l~~~~l-~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEE-SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCC-CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            4566777777776 366666666777777777777777766666777777777777777777765566667777777777


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      +++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            77777774444445677777777777777776666667777777777777776654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.80  E-value=6.5e-19  Score=109.54  Aligned_cols=130  Identities=18%  Similarity=0.239  Sum_probs=112.9

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++|+.|++++|.+. .++ .+ ..+++|++|++++|.++  .+..+..+++|+.|++++|.++...+..+..+++|+.+
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l-~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GI-EYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TG-GGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             cCCccEEeccCCCcc-ChH-HH-hcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            357899999999985 666 33 77999999999999776  34477889999999999999987678888999999999


Q ss_pred             EecCCcccccCChhccCCCCCcEEeccccc-ccccCcccccCCCCCCeEEcCCCccce
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNF-LTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      ++++|.+.+..+..+..+++|+++++++|. ++ ..+ .+..+++|+.|++++|.+++
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC
Confidence            999999987778889999999999999998 65 444 68899999999999998875

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=1.6e-18  Score=109.57  Aligned_cols=131  Identities=22%  Similarity=0.255  Sum_probs=114.3

Q ss_pred             eEEEccCCeecccCCcccccCCCcccEEEccCCccccCCC-cCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEec
Q 032459            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR   83 (140)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   83 (140)
                      +.++++++.+. .+|..+   .+.+++|++++|.+++..+ ..+..+++|+.|++++|.++...+..+..+++|+.|+++
T Consensus        14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            46888998874 688765   3567899999999996544 457889999999999999997767789999999999999


Q ss_pred             CCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceec
Q 032459           84 GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL  139 (140)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  139 (140)
                      +|.+.+..+..+..+++|+++++++|.+++..+..+..+++|+.|++++|.+++..
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  145 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA  145 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC
Confidence            99999777778999999999999999999888899999999999999999987654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.80  E-value=8.5e-19  Score=121.70  Aligned_cols=132  Identities=20%  Similarity=0.208  Sum_probs=67.5

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   82 (140)
                      +++.|++++|.+. .++...+..+++|++|++++|.+++..|..|..+++|+.|++++|.++...+..+..+++|+.|++
T Consensus        33 ~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           33 ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            4555666666553 233333355556666666665555544555555555555555555555333334445555555555


Q ss_pred             cCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (140)
                      ++|.+.+..+..+..+++|+++++++|.++...+..+..+++|+.|++++|.+
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  164 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL  164 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence            55555544444444455555555555554444444444444444444444443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.80  E-value=1.7e-18  Score=123.22  Aligned_cols=133  Identities=17%  Similarity=0.163  Sum_probs=58.6

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccC---cchhhccCCCccE
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT---IPKEIGNVTKLIR   79 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~---~~~~~~~~~~L~~   79 (140)
                      +|+.|++++|.+.+..+...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.   .+..+..+++|+.
T Consensus       401 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~  480 (606)
T 3t6q_A          401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI  480 (606)
T ss_dssp             TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred             cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence            3444444444443333333233444444444444444433444444444444444444444321   1123344444444


Q ss_pred             EEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459           80 LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        80 l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (140)
                      +++++|.+.+..|..+..+++|+++++++|.+++..+..+..+++| .+++++|.++
T Consensus       481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~  536 (606)
T 3t6q_A          481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS  536 (606)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred             EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence            4444444444444444444445555555554444444444444444 4444444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.80  E-value=9.3e-19  Score=121.51  Aligned_cols=134  Identities=21%  Similarity=0.190  Sum_probs=80.8

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++|++|++++|.+.+..|.. +..+++|++|++++|.++...+..|..+++|+.|++++|.+....+..+..+++|+.|
T Consensus        55 l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  133 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL  133 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCEeChhh-hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence            356777777777665333333 3667777777777777764444455666777777777776665555566666666666


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (140)
                      ++++|.+.+..+..+..+++|+.+++++|.+++..+..+..+++|+.|++++|.+
T Consensus       134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred             ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence            6666666555555555666666666666665544444444555555555555444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.79  E-value=9.1e-19  Score=120.79  Aligned_cols=137  Identities=21%  Similarity=0.279  Sum_probs=113.1

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCC-CcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKI-PSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      ++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+.+ +..+..+++|++|++++|.++...|..+..+++|+.|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSF-SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTT-SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHh-ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence            578999999999864444444 78999999999999887443 5678889999999999999987778889999999999


Q ss_pred             EecCCcccccCChh--ccCCCCCcEEecccccccccCccc-ccCCCCCCeEEcCCCccceec
Q 032459           81 YLRGNQLQGEIPEE--LGNLAELEMLWLQNNFLTRAIPSS-IFNLSSLSNLDLSVNNLTGSL  139 (140)
Q Consensus        81 ~l~~~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~  139 (140)
                      ++++|.+.+..+..  +..+++|+++++++|.+++..+.. +..+++|++|++++|.+++..
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  170 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC  170 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence            99999987644443  778899999999999998776765 788999999999999887643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.79  E-value=1.3e-18  Score=119.91  Aligned_cols=131  Identities=24%  Similarity=0.241  Sum_probs=81.9

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   82 (140)
                      +|++|++++|...+.++...+..+++|++|++++|.++ .+| .+..+++|+.|++++|.++...+..+..+++|+.|++
T Consensus       161 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  238 (440)
T 3zyj_A          161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM  238 (440)
T ss_dssp             TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEEC
Confidence            33334443332223333334455566666666666665 333 3456666777777777666555666667777777777


Q ss_pred             cCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (140)
                      ++|.+.+..+..+..+++|+.+++++|.++...+..+..+++|+.|++++|++
T Consensus       239 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          239 IQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             TTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            77777666666666777777777777777766556666777777777777765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.79  E-value=2.9e-19  Score=128.01  Aligned_cols=133  Identities=22%  Similarity=0.330  Sum_probs=108.2

Q ss_pred             CCCceEEEccCCeeccc-----------------CCccccc--CCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecc
Q 032459            1 MSSLLSIRFTNNTLFGE-----------------LPPNFCN--HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD   61 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~   61 (140)
                      +++|++|++++|.+.+.                 +|..+ .  .+++|++|++++|.+.+.+|..+..+++|+.|++++|
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  283 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN  283 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence            57899999999998764                 88877 5  7999999999999999899999999999999999999


Q ss_pred             c-ccc-CcchhhccC------CCccEEEecCCcccccCCh--hccCCCCCcEEecccccccccCcccccCCCCCCeEEcC
Q 032459           62 D-FSG-TIPKEIGNV------TKLIRLYLRGNQLQGEIPE--ELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLS  131 (140)
Q Consensus        62 ~-~~~-~~~~~~~~~------~~L~~l~l~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~  131 (140)
                      . +++ ..|..+..+      ++|+.+++++|.+. ..|.  .+..+++|+++++++|.+++.+| .+..+++|+.|+++
T Consensus       284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~  361 (636)
T 4eco_A          284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLA  361 (636)
T ss_dssp             TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECC
T ss_pred             CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECC
Confidence            8 776 567766665      78888888888888 6676  78888888888888888876666 66666677777777


Q ss_pred             CCccc
Q 032459          132 VNNLT  136 (140)
Q Consensus       132 ~n~~~  136 (140)
                      +|.++
T Consensus       362 ~N~l~  366 (636)
T 4eco_A          362 YNQIT  366 (636)
T ss_dssp             SSEEE
T ss_pred             CCccc
Confidence            76655

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.79  E-value=8.6e-19  Score=117.64  Aligned_cols=136  Identities=20%  Similarity=0.239  Sum_probs=102.9

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++|++|++++|.+. .++...+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.++
T Consensus        52 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred             ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence            46888888888875 55655557788889999988888876677788888888888888888854445577888888888


Q ss_pred             ecCCcccccCC-hhccCCCCCcEEecccc-cccccCcccccCCCCCCeEEcCCCcccee
Q 032459           82 LRGNQLQGEIP-EELGNLAELEMLWLQNN-FLTRAIPSSIFNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus        82 l~~~~~~~~~~-~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  138 (140)
                      +++|++..... ..+..+++|+++++++| .++...+..+..+++|++|++++|.+++.
T Consensus       131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  189 (353)
T 2z80_A          131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY  189 (353)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence            88888874433 35677788888888887 35555566677777888888887776654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.78  E-value=2.3e-18  Score=122.53  Aligned_cols=134  Identities=20%  Similarity=0.160  Sum_probs=84.4

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   82 (140)
                      ++++|++++|.+. .+++..+..+++|++|++++|.+++..|..|..+++|+.|++++|.++...|..+..+++|+.|++
T Consensus        34 ~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           34 STECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             cCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            4667777777765 333333366777777777777776666666777777777777777766555666666677777777


Q ss_pred             cCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      ++|.+.+..+..+..+++|+++++++|.+++.....+..+++|+.|++++|.+++
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  167 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY  167 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence            7766665444555666666666666666654333333346666666666665543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.78  E-value=3.1e-18  Score=120.91  Aligned_cols=136  Identities=19%  Similarity=0.205  Sum_probs=106.5

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++++.|++++|.+. .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.++...+..+..+++|+.++
T Consensus        28 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence            36788888888875 44444457788889999988888876677788888888888888888766667788888888888


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccc-cCcccccCCCCCCeEEcCCCcccee
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTR-AIPSSIFNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~L~~l~l~~n~~~~~  138 (140)
                      +++|.+....+..+..+++|+++++++|.++. ..|..+..+++|+.|++++|.+++.
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred             ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence            88888875544457788888888888888876 3577788888888888888877653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=1e-17  Score=106.46  Aligned_cols=128  Identities=23%  Similarity=0.312  Sum_probs=111.9

Q ss_pred             eEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecC
Q 032459            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG   84 (140)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~   84 (140)
                      +.++.+++.+ +.+|..+   .++|+.|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.|++++
T Consensus        22 ~~v~c~~~~l-~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           22 TTVDCRSKRH-ASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TEEECTTSCC-SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEeEccCCCc-CccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            4577777776 4788766   48999999999999987788899999999999999999866567788999999999999


Q ss_pred             CcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           85 NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        85 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      |.+.+..+..+..+++|+++++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~  149 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS  149 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCC
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCc
Confidence            9999766677889999999999999998 668888999999999999998864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.78  E-value=1.9e-18  Score=110.26  Aligned_cols=131  Identities=16%  Similarity=0.284  Sum_probs=87.6

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCc-cccCCCcCCcCCCCCCEEEeec-cccccCcchhhccCCCccEE
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNM-FHGKIPSTLSNCKRLRNISLSL-DDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~l   80 (140)
                      ++++|++++|.+. .++...+..+++|+.|++++|. ++...+..|..+++|+.|++++ |.++...+..+..+++|+.+
T Consensus        32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            5677777777764 5555445667777777777775 6655555667777777777776 77765545566677777777


Q ss_pred             EecCCcccccCChhccCCCCCc---EEecccc-cccccCcccccCCCCCC-eEEcCCCccc
Q 032459           81 YLRGNQLQGEIPEELGNLAELE---MLWLQNN-FLTRAIPSSIFNLSSLS-NLDLSVNNLT  136 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~---~l~l~~~-~~~~~~~~~~~~~~~L~-~l~l~~n~~~  136 (140)
                      ++++|.+.+ .|. +..+++++   ++++++| .++...+..+..+++|+ .+++++|.++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence            777777664 333 55556665   7777777 66655555566666777 7777666654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.78  E-value=1.3e-18  Score=122.41  Aligned_cols=138  Identities=20%  Similarity=0.209  Sum_probs=113.3

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++|++|++++|.+.+..+.. +..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGD-LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCCEECSST-TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccCccChhh-hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            47899999999986444444 47899999999999999977778899999999999999999876666788999999999


Q ss_pred             ecCCccccc-CChhccCCCCCcEEeccccc-ccccCcccccCCCCCCeEEcCCCccceecC
Q 032459           82 LRGNQLQGE-IPEELGNLAELEMLWLQNNF-LTRAIPSSIFNLSSLSNLDLSVNNLTGSLC  140 (140)
Q Consensus        82 l~~~~~~~~-~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  140 (140)
                      +++|.+.+. .+..+..+++|+++++++|. +....+..+..+++|++|++++|.+++.+|
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  165 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS  165 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence            999998753 45678888999999999988 443434678888999999999988877543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.78  E-value=1.9e-18  Score=124.34  Aligned_cols=135  Identities=24%  Similarity=0.222  Sum_probs=93.3

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      +++++|++++|.+. .++...+..+++|++|++++|.+++..|..+..+++|++|++++|.++...+..+..+++|++++
T Consensus        25 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            35777777777764 45554456677777777777777766666667777777777777777644444567777777777


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      +++|.+.+..+..+..+++|+++++++|.+++..+..+..+++|++|++++|.+++
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  159 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA  159 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence            77777765555666677777777777777766666666677777777777776544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.78  E-value=3.2e-18  Score=118.24  Aligned_cols=116  Identities=22%  Similarity=0.221  Sum_probs=77.2

Q ss_pred             CcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCC
Q 032459           19 PPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNL   98 (140)
Q Consensus        19 ~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~   98 (140)
                      +...+..+++|+.|++++|.+++ +| .+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+
T Consensus       188 ~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  265 (452)
T 3zyi_A          188 SEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL  265 (452)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             ChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence            33334455566666666666652 33 35566677777777777765556667777777777777777776666667777


Q ss_pred             CCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459           99 AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        99 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (140)
                      ++|+.+++++|.++...+..+..+++|+.|++++|++.
T Consensus       266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            77777777777777665566667777777777777653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=1.6e-18  Score=116.71  Aligned_cols=135  Identities=23%  Similarity=0.228  Sum_probs=114.4

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++|+.|++++|.+. .++...+..+++|++|++++|.++...+..|..+++|+.|++++|.++...+..+..+++|+.|
T Consensus        63 l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  141 (361)
T 2xot_A           63 LTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL  141 (361)
T ss_dssp             CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             ccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence            478999999999985 5666556889999999999999997777788899999999999999997778889999999999


Q ss_pred             EecCCcccccCChhc---cCCCCCcEEecccccccccCcccccCCCC--CCeEEcCCCccc
Q 032459           81 YLRGNQLQGEIPEEL---GNLAELEMLWLQNNFLTRAIPSSIFNLSS--LSNLDLSVNNLT  136 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~---~~~~~l~~l~l~~~~~~~~~~~~~~~~~~--L~~l~l~~n~~~  136 (140)
                      ++++|.+....+..+   ..+++|+.|++++|.++...+..+..++.  ++.+++++|++.
T Consensus       142 ~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          142 YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             ECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            999999985444444   56899999999999998666677777776  488999999875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.77  E-value=3.4e-18  Score=125.80  Aligned_cols=135  Identities=21%  Similarity=0.171  Sum_probs=84.5

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCC-CcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKI-PSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      ++++.|++++|.+.+..+.. +..+++|++|++++|...+.+ |..|..+++|++|++++|.+....|..+..+++|+.|
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            46677777777765333333 366677777777776443333 5566666777777777776665556666666777777


Q ss_pred             EecCCcccccCChh--ccCCCCCcEEecccccccccCc-ccccCCCCCCeEEcCCCccce
Q 032459           81 YLRGNQLQGEIPEE--LGNLAELEMLWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        81 ~l~~~~~~~~~~~~--~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      ++++|.+.+..+..  +..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~  162 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL  162 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence            77777666544433  5566667777777766655433 456666667777766666544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.77  E-value=4.7e-18  Score=125.09  Aligned_cols=139  Identities=20%  Similarity=0.210  Sum_probs=121.7

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchh--hccCCCcc
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKE--IGNVTKLI   78 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~--~~~~~~L~   78 (140)
                      +++|+.|++++|...+.++...+..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..+..  +..+++|+
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~  126 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT  126 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence            5789999999997767786666689999999999999999888999999999999999999998655554  88899999


Q ss_pred             EEEecCCcccccCC-hhccCCCCCcEEecccccccccCcccccCC--CCCCeEEcCCCccceec
Q 032459           79 RLYLRGNQLQGEIP-EELGNLAELEMLWLQNNFLTRAIPSSIFNL--SSLSNLDLSVNNLTGSL  139 (140)
Q Consensus        79 ~l~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~--~~L~~l~l~~n~~~~~~  139 (140)
                      .|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+..+  ++|+.|+++.|.+.+.+
T Consensus       127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~  190 (844)
T 3j0a_A          127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV  190 (844)
T ss_dssp             EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC
T ss_pred             EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccc
Confidence            99999999986655 578899999999999999988888888776  89999999999887754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.77  E-value=1.5e-17  Score=118.46  Aligned_cols=112  Identities=19%  Similarity=0.198  Sum_probs=82.7

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++|+.|++++|.+. .++...+..+++|+.|++++|.+++..|..+..+++|+.|++++|.++...+..+..+++|+.|
T Consensus        74 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           74 FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  152 (597)
T ss_dssp             CCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence            467888888888775 4444344678888888888888886666677778888888888888775444556777888888


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccc
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR  113 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~  113 (140)
                      ++++|.+.+..+..+..+++|++|++++|.+++
T Consensus       153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            888888776666677777778888877777654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.77  E-value=1.4e-17  Score=112.97  Aligned_cols=131  Identities=20%  Similarity=0.194  Sum_probs=106.0

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+..+++|+.+
T Consensus        68 l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  146 (390)
T 3o6n_A           68 FRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL  146 (390)
T ss_dssp             CCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence            578999999999985 5555555889999999999999997777888999999999999999985444556889999999


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (140)
                      ++++|.+.+..+..+..+++|+++++++|.+++..   +..+++|+.+++++|.+
T Consensus       147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred             ECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccc
Confidence            99999998777778889999999999999987542   33445555555554443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.77  E-value=8.2e-18  Score=116.23  Aligned_cols=134  Identities=19%  Similarity=0.218  Sum_probs=79.4

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++++.|++++|.+.+ ++...+..+++|++|++++|.+++..+..|..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus        75 ~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            356677777777643 3333336677777777777777765566666677777777777776654445566666777777


Q ss_pred             ecCCcccccCChhccCC-------------------------CCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459           82 LRGNQLQGEIPEELGNL-------------------------AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~-------------------------~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (140)
                      +++|.+....+..+..+                         ++|+++++++|.+++. + .+..+++|+.|++++|.++
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~  231 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP  231 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCc
Confidence            77766654333344444                         4455555555554422 1 2445556666666666554


Q ss_pred             ee
Q 032459          137 GS  138 (140)
Q Consensus       137 ~~  138 (140)
                      +.
T Consensus       232 ~~  233 (452)
T 3zyi_A          232 EI  233 (452)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.77  E-value=1.3e-17  Score=114.93  Aligned_cols=62  Identities=18%  Similarity=0.203  Sum_probs=29.9

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccc
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS   64 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~   64 (140)
                      ++|++|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.++
T Consensus        88 ~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~  149 (440)
T 3zyj_A           88 RHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE  149 (440)
T ss_dssp             SSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred             CCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc
Confidence            45555555555543 333333344555555555555555333334444455555555544443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=2.3e-18  Score=126.68  Aligned_cols=133  Identities=20%  Similarity=0.290  Sum_probs=102.0

Q ss_pred             CCCceEEEccCCeecc-----------------cCCccc-ccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccc
Q 032459            1 MSSLLSIRFTNNTLFG-----------------ELPPNF-CNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD   62 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~-----------------~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~   62 (140)
                      |++|+.|++++|.+.+                 .+|..+ |..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            5788899999998876                 378776 3378899999999998888888888888899999998887


Q ss_pred             -ccc-CcchhhccCC-------CccEEEecCCcccccCCh--hccCCCCCcEEecccccccccCcccccCCCCCCeEEcC
Q 032459           63 -FSG-TIPKEIGNVT-------KLIRLYLRGNQLQGEIPE--ELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLS  131 (140)
Q Consensus        63 -~~~-~~~~~~~~~~-------~L~~l~l~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~  131 (140)
                       +++ ..|..+..++       +|+.|++++|.+. ..|.  .+..+++|+.|++++|.++ .+| .+..+++|+.|+++
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls  603 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLD  603 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECC
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECc
Confidence             765 5666555444       7888888888877 6666  6777778888888877776 555 66667777777777


Q ss_pred             CCccc
Q 032459          132 VNNLT  136 (140)
Q Consensus       132 ~n~~~  136 (140)
                      +|.++
T Consensus       604 ~N~l~  608 (876)
T 4ecn_A          604 YNQIE  608 (876)
T ss_dssp             SSCCS
T ss_pred             CCccc
Confidence            77665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.75  E-value=2.4e-18  Score=115.47  Aligned_cols=134  Identities=19%  Similarity=0.175  Sum_probs=86.4

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcc-hhhccCCCccE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIP-KEIGNVTKLIR   79 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~   79 (140)
                      +++|+.|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.++...+ ..+..+++|+.
T Consensus        75 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~  153 (353)
T 2z80_A           75 CVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI  153 (353)
T ss_dssp             CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred             CCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcE
Confidence            456777788777765 3443334667777777777777774333336667777777777777763322 35666777777


Q ss_pred             EEecCCc-ccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459           80 LYLRGNQ-LQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus        80 l~l~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (140)
                      +++++|. +....+..+..+++|+++++++|.+++..+..+..+++|++|++++|.+
T Consensus       154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred             EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence            7777763 4444455666667777777777777666566666666666666665544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.75  E-value=3.2e-17  Score=109.08  Aligned_cols=131  Identities=18%  Similarity=0.266  Sum_probs=66.7

Q ss_pred             CCceEEEccCCeecc-cCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            2 SSLLSIRFTNNTLFG-ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      ++|+.|++++|.+.. ......+..+++|++|++++|.++ .+|..+.  ++|+.|++++|.++...+..+..+++|+.+
T Consensus       145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  221 (330)
T 1xku_A          145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKL  221 (330)
T ss_dssp             TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred             ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            344445555444421 122222244455555555555444 2333221  445555555555554444555555666666


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (140)
                      ++++|.+.+..+..+..+++|+++++++|.++ .+|..+..+++|++|++++|.++
T Consensus       222 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             ECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             ECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence            66666655444445555566666666666655 44455555566666666666554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.75  E-value=3.9e-18  Score=112.82  Aligned_cols=134  Identities=19%  Similarity=0.110  Sum_probs=80.6

Q ss_pred             CCCceEEEccCCeecccCCcccccCC-----CcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccC--cchhh--
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHL-----SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT--IPKEI--   71 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~~--   71 (140)
                      +++|++|++++|.+.+. |..+ ..+     ++|++|++++|.+++..+..+..+++|+.|++++|.+.+.  .+..+  
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             CCCccEEEccCCCCcch-hHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            35677777777777543 4333 333     6777777777777765556777777777777777765432  12222  


Q ss_pred             ccCCCccEEEecCCccccc--CC-hhccCCCCCcEEecccccccccCc-ccccCCCCCCeEEcCCCccc
Q 032459           72 GNVTKLIRLYLRGNQLQGE--IP-EELGNLAELEMLWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        72 ~~~~~L~~l~l~~~~~~~~--~~-~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~  136 (140)
                      ..+++|+.+++++|.+.+.  .+ ..+..+++|+++++++|.+++..+ ..+..+++|+.|++++|.++
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence            5566677777777766521  11 222345666677777666665443 33444566666666666655

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.75  E-value=1e-17  Score=102.44  Aligned_cols=130  Identities=15%  Similarity=0.189  Sum_probs=107.0

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++|++|++++|.+. .++. +....++|+.|++++|.+++.  ..+..+++|+.|++++|.++...+..+..+++|+.+
T Consensus        18 ~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           18 AVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            367899999999986 5544 434445999999999999854  678889999999999999985544556889999999


Q ss_pred             EecCCcccccCCh--hccCCCCCcEEecccccccccCcc----cccCCCCCCeEEcCCCccc
Q 032459           81 YLRGNQLQGEIPE--ELGNLAELEMLWLQNNFLTRAIPS----SIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        81 ~l~~~~~~~~~~~--~~~~~~~l~~l~l~~~~~~~~~~~----~~~~~~~L~~l~l~~n~~~  136 (140)
                      ++++|.+.. .+.  .+..+++|+.+++++|+++.. +.    .+..+++|+.++++.|...
T Consensus        94 ~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           94 ILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             ECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             ECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999973 444  778899999999999999844 54    4888999999999988754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.75  E-value=1e-17  Score=120.59  Aligned_cols=138  Identities=26%  Similarity=0.283  Sum_probs=112.4

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++|+.|++++|.+.+ ++...+..+++|++|++++|.++...+..|..+++|++|++++|.++...+..+..+++|+++
T Consensus        48 l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  126 (680)
T 1ziw_A           48 YSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL  126 (680)
T ss_dssp             GTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEE
T ss_pred             CCcCcEEECCCCccCc-cCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEE
Confidence            4678999999998864 444445789999999999999985555578889999999999999886666788889999999


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCccccc--CCCCCCeEEcCCCccceec
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF--NLSSLSNLDLSVNNLTGSL  139 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~--~~~~L~~l~l~~n~~~~~~  139 (140)
                      ++++|.+.+..+..+..+++|+++++++|.+++..+..+.  .+++|+.|++++|.+++..
T Consensus       127 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  187 (680)
T 1ziw_A          127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS  187 (680)
T ss_dssp             ECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBC
T ss_pred             ECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccC
Confidence            9999998877777788889999999999988866665543  4578999999998876543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.74  E-value=1.2e-17  Score=116.99  Aligned_cols=134  Identities=27%  Similarity=0.346  Sum_probs=70.6

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCcccc--CCCcCCcCCCCCCEEEeeccccccCcch-hhccCC---
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG--KIPSTLSNCKRLRNISLSLDDFSGTIPK-EIGNVT---   75 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~---   75 (140)
                      ++|++|++++|.+.+..|..+ ..+++|++|++++|.+++  ..|..+..+++|+.|++++|.+....|. .+..++   
T Consensus       324 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~  402 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL  402 (520)
T ss_dssp             CCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred             CcccEEEeECCccChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence            456666666666654445444 456666666666666653  2334455555666666666655532332 233333   


Q ss_pred             -------------------CccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459           76 -------------------KLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        76 -------------------~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (140)
                                         +|+.+++++|++. ..|..+..+++|+++++++|.++...+..+..+++|+++++++|+++
T Consensus       403 ~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          403 SLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             EEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence                               4444444444444 33444445555666666666655322223555566666666666654


Q ss_pred             e
Q 032459          137 G  137 (140)
Q Consensus       137 ~  137 (140)
                      +
T Consensus       482 c  482 (520)
T 2z7x_B          482 C  482 (520)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.74  E-value=1.3e-17  Score=106.45  Aligned_cols=135  Identities=16%  Similarity=0.158  Sum_probs=73.6

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccC-CccccCCCcCCcCCCCCCEEEeecccccc--------------
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKN-NMFHGKIPSTLSNCKRLRNISLSLDDFSG--------------   65 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~l~l~~~~~~~--------------   65 (140)
                      +++|+.|++++|...+.++...+..+++|++|++++ |.++...+..|..+++|+.|++++|.++.              
T Consensus        54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~  133 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFF  133 (239)
T ss_dssp             CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEE
T ss_pred             CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccccccccccccccc
Confidence            356666777666522355554445666666666666 66664444455556666666666655542              


Q ss_pred             ------------CcchhhccCCCcc-EEEecCCcccccCChhccCCCCCcEEeccccc-ccccCcccccCC-CCCCeEEc
Q 032459           66 ------------TIPKEIGNVTKLI-RLYLRGNQLQGEIPEELGNLAELEMLWLQNNF-LTRAIPSSIFNL-SSLSNLDL  130 (140)
Q Consensus        66 ------------~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~~-~~L~~l~l  130 (140)
                                  ..+..+..+++|+ .+++++|++....+..+.. ++|+.+++++|. ++...+..+..+ ++|+.+++
T Consensus       134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l  212 (239)
T 2xwt_C          134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV  212 (239)
T ss_dssp             EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred             EEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence                        2223344455555 5555555554222222222 556666666663 554444555566 66667777


Q ss_pred             CCCccc
Q 032459          131 SVNNLT  136 (140)
Q Consensus       131 ~~n~~~  136 (140)
                      ++|.++
T Consensus       213 ~~N~l~  218 (239)
T 2xwt_C          213 SQTSVT  218 (239)
T ss_dssp             TTCCCC
T ss_pred             CCCccc
Confidence            666654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.74  E-value=5.8e-17  Score=115.38  Aligned_cols=134  Identities=20%  Similarity=0.241  Sum_probs=98.2

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccc-cCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFH-GKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      ++++.++++.|.+... +...+..++.++.|++++|.+. ...|..+..+++|+.|++++|.+++..|..+..+++|+.|
T Consensus       445 ~~l~~l~ls~n~l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L  523 (635)
T 4g8a_A          445 RNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  523 (635)
T ss_dssp             TTCCEEECTTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             cccccccccccccccc-cccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence            3455566666655433 3333356777778888777644 3456677778888888888888886667778888888888


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccccCC-CCCCeEEcCCCccc
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNL-SSLSNLDLSVNNLT  136 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~L~~l~l~~n~~~  136 (140)
                      ++++|++.+..+..+..+++|++|++++|.++...+..+..+ ++|+.|++++|++.
T Consensus       524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            888888876667777788888888888888887777777776 57888888888764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.74  E-value=2.4e-17  Score=102.09  Aligned_cols=113  Identities=20%  Similarity=0.239  Sum_probs=100.3

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++++.|++++|.+.+..+...+..+++|++|++++|.+++..|..+..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            36899999999986444444568899999999999999988889999999999999999999977777888999999999


Q ss_pred             ecCCcccccCChhccCCCCCcEEeccccccccc
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA  114 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~  114 (140)
                      +++|++.+..|..+..+++|+++++++|+++..
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            999999988888899999999999999998743

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.74  E-value=6e-17  Score=107.74  Aligned_cols=130  Identities=19%  Similarity=0.281  Sum_probs=82.0

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++++.|++++|.+. .++...+..+++|++|++++|.+++..|..+..+++|+.|++++|.++ ..|..+.  ++|+.++
T Consensus        52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~  127 (330)
T 1xku_A           52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR  127 (330)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred             CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence            45777788887775 445444467788888888888887666777777788888888877776 3333322  4566666


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccc--cCcccccCCCCCCeEEcCCCcc
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTR--AIPSSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~--~~~~~~~~~~~L~~l~l~~n~~  135 (140)
                      +++|.+.+..+..+..+++|+++++++|.++.  ..+..+..+++|+.|++++|.+
T Consensus       128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            66666654444455566666666666666542  3344455555555555555544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=7.8e-17  Score=105.69  Aligned_cols=124  Identities=28%  Similarity=0.480  Sum_probs=57.8

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++|+.|++++|.+. .++.  +..+++|++|++++|.+++ ++ .+..+++|+.|++++|.++..  ..+..+++|+.|+
T Consensus        68 ~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~  140 (291)
T 1h6t_A           68 PNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLY  140 (291)
T ss_dssp             TTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEE
T ss_pred             CCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEE
Confidence            44555555555543 2222  2445555555555555442 11 244445555555555554421  2344445555555


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (140)
                      +++|.+.+.  ..+..+++|+++++++|.+++..+  +..+++|+.|++++|.++
T Consensus       141 l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          141 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             ccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            555554422  334444555555555555543322  444555555555555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=6.1e-17  Score=119.24  Aligned_cols=133  Identities=18%  Similarity=0.318  Sum_probs=85.5

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCC--------CCCCEEEeeccccccCcchhhc--
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNC--------KRLRNISLSLDDFSGTIPKEIG--   72 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~--------~~L~~l~l~~~~~~~~~~~~~~--   72 (140)
                      +|+.|++++|.+. .+|..++..+++|+.|++++|.++ .+|..+...        ++|+.|++++|.++ ..|..+.  
T Consensus       674 ~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~  750 (876)
T 4ecn_A          674 NASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRAT  750 (876)
T ss_dssp             CEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTT
T ss_pred             CcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhc
Confidence            5666666666664 566655556677777777777766 444433322        26777777777776 4565554  


Q ss_pred             cCCCccEEEecCCcccccCChhccCCCCCcEEeccc------ccccccCcccccCCCCCCeEEcCCCccceecC
Q 032459           73 NVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN------NFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC  140 (140)
Q Consensus        73 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~------~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  140 (140)
                      .+++|+.|++++|.+.+ .|..+..+++|+.|++++      |.+.+..|..+..+++|+.|++++|.+ +.+|
T Consensus       751 ~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip  822 (876)
T 4ecn_A          751 TLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVD  822 (876)
T ss_dssp             TCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred             cCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccC
Confidence            66777777777777764 466666677777777754      555566666677777777777777766 5544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.73  E-value=6.1e-17  Score=107.82  Aligned_cols=133  Identities=25%  Similarity=0.340  Sum_probs=73.1

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCcccc--CCCcCCcCC--------------------CCCCEEEeec
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG--KIPSTLSNC--------------------KRLRNISLSL   60 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~~~--------------------~~L~~l~l~~   60 (140)
                      +|++|++++|.+. .++...+..+++|+.|++.+|.++.  ..+..+..+                    ++|+.|++++
T Consensus       124 ~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~  202 (332)
T 2ft3_A          124 SLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDH  202 (332)
T ss_dssp             TCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCS
T ss_pred             cCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCC
Confidence            3445555555443 3444444556666666666665531  222222221                    2344444444


Q ss_pred             cccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           61 DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        61 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      |.++...+..+..+++|+.+++++|.+.+..+..+..+++|+++++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus       203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK  278 (332)
T ss_dssp             SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence            4444333445555666666666666666555555666666777777777665 455556666677777777666543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.73  E-value=3.9e-17  Score=114.39  Aligned_cols=110  Identities=25%  Similarity=0.424  Sum_probs=87.8

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++|+.|++++|.+.+.+|...+..+++|++|++++|.+++..|..+.  ++|+.|++++|.++ ..|..+..+++|+.+
T Consensus       373 l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L  449 (520)
T 2z7x_B          373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQEL  449 (520)
T ss_dssp             CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred             CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEE
Confidence            467777888888776557766566778888888888888766655543  68999999999988 677777799999999


Q ss_pred             EecCCcccccCCh-hccCCCCCcEEeccccccccc
Q 032459           81 YLRGNQLQGEIPE-ELGNLAELEMLWLQNNFLTRA  114 (140)
Q Consensus        81 ~l~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~  114 (140)
                      ++++|+++. .|. .+..+++|+++++++|+++..
T Consensus       450 ~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          450 NVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             ECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ECCCCcCCc-cCHHHhccCCcccEEECcCCCCccc
Confidence            999999984 454 488899999999999998754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.73  E-value=4.8e-17  Score=108.74  Aligned_cols=126  Identities=27%  Similarity=0.441  Sum_probs=60.7

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++|++|++++|.+. .++.  +..+++|++|++++|.+++ + ..+..+++|+.|++++|.++..  ..+..+++|+.++
T Consensus       221 ~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~  293 (347)
T 4fmz_A          221 TRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLF  293 (347)
T ss_dssp             TTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred             CcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEE
Confidence            34445555555443 2222  2445555555555555442 1 2344455555555555555422  2344455555555


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (140)
                      +++|.+.+..+..+..+++|+++++++|.+++..+  +..+++|+.+++++|.++
T Consensus       294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            55555554444445555555555555555553333  445555555555555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.72  E-value=4.4e-17  Score=115.22  Aligned_cols=134  Identities=22%  Similarity=0.274  Sum_probs=72.0

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCcccc--CCCcCCcCCCCCCEEEeeccccccCcch-hhccCCC--
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG--KIPSTLSNCKRLRNISLSLDDFSGTIPK-EIGNVTK--   76 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~~--   76 (140)
                      ++|++|++++|.+.+..|..+ ..+++|++|++++|.+++  ..|..+..+++|+.|++++|.+++..|. .+..+++  
T Consensus       353 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~  431 (562)
T 3a79_B          353 SSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL  431 (562)
T ss_dssp             CCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred             CCceEEECCCCccccchhhhh-cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence            456677777776655455444 556667777776666663  1233455666666666666666542332 2333444  


Q ss_pred             --------------------ccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459           77 --------------------LIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        77 --------------------L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (140)
                                          |+.+++++|++. ..|..+..+++|+++++++|.++...+..+..+++|+.+++++|++.
T Consensus       432 ~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          432 VLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             EEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             EEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence                                444444444444 33333335555666666666555322222555566666666666554


Q ss_pred             e
Q 032459          137 G  137 (140)
Q Consensus       137 ~  137 (140)
                      +
T Consensus       511 c  511 (562)
T 3a79_B          511 C  511 (562)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.71  E-value=1.3e-16  Score=106.21  Aligned_cols=105  Identities=20%  Similarity=0.288  Sum_probs=47.9

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   82 (140)
                      +++.|++++|.+. .++...+..+++|++|++++|.+++..|..+..+++|+.|++++|.++ ..|..+.  ++|+.+++
T Consensus        55 ~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           55 DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI  130 (332)
T ss_dssp             TCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred             CCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence            3444555555443 222222244455555555555554444444444555555555555444 2222221  34455555


Q ss_pred             cCCcccccCChhccCCCCCcEEecccccc
Q 032459           83 RGNQLQGEIPEELGNLAELEMLWLQNNFL  111 (140)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~  111 (140)
                      ++|.+....+..+..+++|+++++++|.+
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCcc
Confidence            55544433333344455555555555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.71  E-value=1.5e-17  Score=109.88  Aligned_cols=135  Identities=21%  Similarity=0.140  Sum_probs=70.3

Q ss_pred             CCceEEEccCCeecccCCcccc-cCCCcccEEEccCCccccCCC----cCCcCCCCCCEEEeeccccccCcchhhccCCC
Q 032459            2 SSLLSIRFTNNTLFGELPPNFC-NHLSNLESLFLKNNMFHGKIP----STLSNCKRLRNISLSLDDFSGTIPKEIGNVTK   76 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~   76 (140)
                      ++|++|++++|.+.+..|..++ ..+++|++|++++|.+++..+    ..+..+++|+.|++++|.+....+..+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            3467777777776655555443 445566666666665553222    12234555555555555555444445555555


Q ss_pred             ccEEEecCCcccc---------------------------cCCh----hccCCCCCcEEecccccccccCcccccCC---
Q 032459           77 LIRLYLRGNQLQG---------------------------EIPE----ELGNLAELEMLWLQNNFLTRAIPSSIFNL---  122 (140)
Q Consensus        77 L~~l~l~~~~~~~---------------------------~~~~----~~~~~~~l~~l~l~~~~~~~~~~~~~~~~---  122 (140)
                      |+.|++++|++.+                           ..+.    .+..+++|+++++++|.+++..|..+..+   
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            5555555555321                           1111    12344555555555555554444444443   


Q ss_pred             CCCCeEEcCCCccc
Q 032459          123 SSLSNLDLSVNNLT  136 (140)
Q Consensus       123 ~~L~~l~l~~n~~~  136 (140)
                      ++|+.|++++|.++
T Consensus       251 ~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          251 SALNSLNLSFAGLE  264 (310)
T ss_dssp             TTCCCEECCSSCCC
T ss_pred             CcCCEEECCCCCCC
Confidence            46666666666554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.71  E-value=6e-17  Score=96.39  Aligned_cols=112  Identities=21%  Similarity=0.244  Sum_probs=98.5

Q ss_pred             CCCcccEEEccCCccc-cCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcE
Q 032459           25 HLSNLESLFLKNNMFH-GKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM  103 (140)
Q Consensus        25 ~l~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~  103 (140)
                      ..++++.|++++|.++ +.+|..+..+++|+.|++++|.++..  ..+..+++|+.+++++|.+.+..|..+..+++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3578999999999998 67888888999999999999999854  77888999999999999998767777778999999


Q ss_pred             Eeccccccccc-CcccccCCCCCCeEEcCCCcccee
Q 032459          104 LWLQNNFLTRA-IPSSIFNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus       104 l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~n~~~~~  138 (140)
                      +++++|.+++. .+..+..+++|+.|++++|.+++.
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~  128 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL  128 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence            99999999864 337789999999999999998764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.71  E-value=1.3e-16  Score=106.61  Aligned_cols=110  Identities=29%  Similarity=0.354  Sum_probs=85.7

Q ss_pred             cCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcE
Q 032459           24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM  103 (140)
Q Consensus        24 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~  103 (140)
                      ..+++|++|++++|.+++. +. +..+++|+.|++++|.++..  ..+..+++|+.+++++|.+.+.  ..+..+++|+.
T Consensus       218 ~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~  291 (347)
T 4fmz_A          218 ANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNS  291 (347)
T ss_dssp             GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred             hcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCE
Confidence            5567788888888877733 32 66778888888888877642  4567788888888888888743  45777888999


Q ss_pred             EecccccccccCcccccCCCCCCeEEcCCCccceec
Q 032459          104 LWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL  139 (140)
Q Consensus       104 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  139 (140)
                      +++++|.+++..+..+..+++|+.|++++|.+++..
T Consensus       292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~  327 (347)
T 4fmz_A          292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR  327 (347)
T ss_dssp             EECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred             EECcCCcCCCcChhHhhccccCCEEEccCCcccccc
Confidence            999999988777788888999999999999887654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.71  E-value=1.8e-16  Score=104.73  Aligned_cols=40  Identities=28%  Similarity=0.439  Sum_probs=17.2

Q ss_pred             ccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459           95 LGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        95 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (140)
                      +..+++|+.+++++|.+++..+  +..+++|+.|++++|.++
T Consensus       169 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~  208 (308)
T 1h6u_A          169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS  208 (308)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCC
T ss_pred             hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccC
Confidence            3334444444444444432211  344445555555555443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.71  E-value=1.1e-16  Score=113.15  Aligned_cols=106  Identities=22%  Similarity=0.198  Sum_probs=50.2

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   82 (140)
                      ++++|++++|.+. .++...+..+++|++|++++|.+++..|..|..+++|++|++++|.++ ..|..  .+++|+.|++
T Consensus        53 ~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           53 RTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            3445555555443 333322344555555555555555444444555555555555555544 22322  4445555555


Q ss_pred             cCCccccc-CChhccCCCCCcEEeccccccc
Q 032459           83 RGNQLQGE-IPEELGNLAELEMLWLQNNFLT  112 (140)
Q Consensus        83 ~~~~~~~~-~~~~~~~~~~l~~l~l~~~~~~  112 (140)
                      ++|.+.+. .|..+..+++|+++++++|.++
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccc
Confidence            55554432 2344445555555555555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.71  E-value=2.7e-17  Score=108.97  Aligned_cols=130  Identities=22%  Similarity=0.146  Sum_probs=85.9

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCc-CCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLS-NCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      ++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+. .+++|+.|++++|.++.. + ....+++|+.+
T Consensus       120 ~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L  196 (317)
T 3o53_A          120 QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTL  196 (317)
T ss_dssp             SSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEE
T ss_pred             CCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEE
Confidence            45566666666654 33333335567777777777777655455443 567777777777777633 2 22246777788


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (140)
                      ++++|.+.+. +..+..+++|+++++++|.++ .+|..+..+++|+.+++++|++.
T Consensus       197 ~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          197 DLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             ECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             ECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            8888777743 444677788888888888877 34666777788888888888776

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.71  E-value=4.5e-17  Score=107.61  Aligned_cols=132  Identities=20%  Similarity=0.160  Sum_probs=88.9

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccC--C--CcCCcCCCCCCEEEeeccccccCcch----hhc
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGK--I--PSTLSNCKRLRNISLSLDDFSGTIPK----EIG   72 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~--~--~~~~~~~~~L~~l~l~~~~~~~~~~~----~~~   72 (140)
                      +++|++|++++|.+. .++...+..+++|++|++++|.+.+.  .  +..+..+++|+.|++++|.++ ..+.    .+.
T Consensus       144 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~  221 (310)
T 4glp_A          144 KPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA  221 (310)
T ss_dssp             CSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence            357777888887774 44444446778888888888876521  1  222345677777777777775 2222    245


Q ss_pred             cCCCccEEEecCCcccccCChhccCC---CCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           73 NVTKLIRLYLRGNQLQGEIPEELGNL---AELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        73 ~~~~L~~l~l~~~~~~~~~~~~~~~~---~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      .+++|+.|++++|.+.+..|..+..+   ++|+++++++|.++ .+|..+.  ++|+.|++++|.+++
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence            67888888888888887666666555   68888888888887 4455443  677777777777765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.70  E-value=2.6e-17  Score=115.88  Aligned_cols=136  Identities=21%  Similarity=0.217  Sum_probs=98.6

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccC-cchhhccCCCccE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT-IPKEIGNVTKLIR   79 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~   79 (140)
                      +++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.++.. .+..+..+++|+.
T Consensus        49 l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~  127 (549)
T 2z81_A           49 CANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT  127 (549)
T ss_dssp             CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred             CCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence            467888999998886 44444447788899999998888865555678888888888888888742 3566777888888


Q ss_pred             EEecCCcccccC-ChhccCCCCCcEEecccccccccCcccccC------------------------CCCCCeEEcCCCc
Q 032459           80 LYLRGNQLQGEI-PEELGNLAELEMLWLQNNFLTRAIPSSIFN------------------------LSSLSNLDLSVNN  134 (140)
Q Consensus        80 l~l~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~------------------------~~~L~~l~l~~n~  134 (140)
                      +++++|...+.. +..+..+++|+++++++|.+++..+..+..                        +++|+.|++++|.
T Consensus       128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  207 (549)
T 2z81_A          128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN  207 (549)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred             EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc
Confidence            888888743333 356777888888888888877665655544                        4566666666666


Q ss_pred             cce
Q 032459          135 LTG  137 (140)
Q Consensus       135 ~~~  137 (140)
                      +++
T Consensus       208 l~~  210 (549)
T 2z81_A          208 LAR  210 (549)
T ss_dssp             CTT
T ss_pred             ccc
Confidence            554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.70  E-value=3.7e-17  Score=114.01  Aligned_cols=132  Identities=17%  Similarity=0.177  Sum_probs=78.2

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcch------------
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPK------------   69 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~------------   69 (140)
                      ++|+.|++++|.+. .++...+..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..+.            
T Consensus        34 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~  110 (487)
T 3oja_A           34 WNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN  110 (487)
T ss_dssp             GGCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred             CCccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCc
Confidence            47888888888886 4444444778888888888888875444  66777777777777766522110            


Q ss_pred             ----hhccCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCccccc-CCCCCCeEEcCCCccc
Q 032459           70 ----EIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF-NLSSLSNLDLSVNNLT  136 (140)
Q Consensus        70 ----~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~-~~~~L~~l~l~~n~~~  136 (140)
                          ....+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+. .+++|+.|++++|.++
T Consensus       111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence                001234455555555555544444555555566666666655554444443 4455555555555444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=2.6e-16  Score=101.85  Aligned_cols=123  Identities=27%  Similarity=0.363  Sum_probs=60.5

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++|+.|++++|.+. .++ . +..+++|++|++++|.+++. +. +..+++|+.|++++|.++. .+.. .. ++|+.|+
T Consensus        41 ~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~  112 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLF  112 (263)
T ss_dssp             TTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEE
T ss_pred             CcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEE
Confidence            45666666666553 444 2 24566666666666666532 22 5556666666666665553 2211 11 4455555


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (140)
                      +++|.+.+.  ..+..+++|+++++++|.+++.  ..+..+++|+.|++++|.++
T Consensus       113 L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A          113 LDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             CCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCC
T ss_pred             ccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCc
Confidence            555544421  2344444555555555544432  13444444444444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.70  E-value=2e-16  Score=95.91  Aligned_cols=112  Identities=24%  Similarity=0.243  Sum_probs=98.2

Q ss_pred             CCCcccEEEccCCccc-cCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcE
Q 032459           25 HLSNLESLFLKNNMFH-GKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM  103 (140)
Q Consensus        25 ~l~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~  103 (140)
                      ..+++++|++++|.++ +.+|..+..+++|+.|++++|.++..  ..+..+++|+.+++++|.+.+..|..+..+++|++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            3578999999999998 67788888999999999999999854  77888999999999999998767777778999999


Q ss_pred             EecccccccccCc-ccccCCCCCCeEEcCCCcccee
Q 032459          104 LWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus       104 l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~~  138 (140)
                      +++++|.+++... ..+..+++|+.|++++|.+++.
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~  135 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL  135 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence            9999999986432 7788999999999999998754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.70  E-value=2.7e-17  Score=114.69  Aligned_cols=130  Identities=22%  Similarity=0.135  Sum_probs=70.9

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCc-CCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLS-NCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      ++|+.|++++|.+.+..|..+ ..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++. + ....+++|+.|
T Consensus       120 ~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L  196 (487)
T 3oja_A          120 QGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTL  196 (487)
T ss_dssp             SSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEE
T ss_pred             CCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEE
Confidence            344555555555432222222 4455566666666655554444443 455566666666655532 1 12235566666


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (140)
                      ++++|.+.+. |..+..+++|+.+++++|.+++ +|..+..+++|+.+++++|++.
T Consensus       197 ~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          197 DLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             ECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             ECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            6666666543 3335566666666666666663 4555666666777777766654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.70  E-value=3.1e-16  Score=103.57  Aligned_cols=125  Identities=23%  Similarity=0.445  Sum_probs=67.3

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++|+.|++++|.+. .++.  +..+++|++|++++|.+++ . ..+..+++|+.|++++|.++.. + .+..+++|+.|+
T Consensus        63 ~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~  135 (308)
T 1h6u_A           63 NNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLY  135 (308)
T ss_dssp             TTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEE
T ss_pred             CCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEE
Confidence            45666666666553 3333  3556666666666666552 2 2355556666666666665532 2 255555666666


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      +++|.+.+..+  +..+++|+++++++|.+++..+  +..+++|+.|++++|.+++
T Consensus       136 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          136 LDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             CCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             CCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence            66665543222  4455556666666665553222  5555566666666655543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=3e-16  Score=111.85  Aligned_cols=124  Identities=28%  Similarity=0.483  Sum_probs=57.5

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      |++|+.|++++|.+. .++.  +..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+..  ...+..+++|+.|
T Consensus        64 l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L  136 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESL  136 (605)
T ss_dssp             CTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC--CGGGGGCTTCSEE
T ss_pred             CCCCCEEEeeCCCCC-CChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC--CccccCCCccCEE
Confidence            345566666666553 2222  2445555555555555542 22 34455555555555555542  1234444455555


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (140)
                      ++++|.+.+.  ..+..+++|+.|++++|.+++..+  +..+++|+.|++++|.+
T Consensus       137 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          137 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             ECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             ECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence            5555544422  334444444444444444443222  33444444444444433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=2.6e-16  Score=101.86  Aligned_cols=126  Identities=23%  Similarity=0.362  Sum_probs=106.1

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++|+.|++++|.+. .++.  +..+++|++|++++|.+++ ++.. .. ++|+.|++++|.++..  +.+..+++|+.|
T Consensus        62 l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L  133 (263)
T 1xeu_A           62 FTNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEIL  133 (263)
T ss_dssp             CTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEE
T ss_pred             CCCCCEEECCCCccC-CChh--hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEE
Confidence            578999999999985 5555  5789999999999999984 4443 23 8999999999999853  458889999999


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  138 (140)
                      ++++|++.+.  ..+..+++|+++++++|.+++.  ..+..+++|+.|++++|.+++.
T Consensus       134 ~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          134 SIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             ECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             ECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            9999999854  3678899999999999999866  6788899999999999987653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.70  E-value=2.8e-16  Score=97.40  Aligned_cols=109  Identities=20%  Similarity=0.252  Sum_probs=97.6

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++++.|++++|.+. .+|.. +..+++|+.|++++|.++...+..|..+++|+.|++++|.++...+..+..+++|+.|+
T Consensus        31 ~~l~~L~L~~n~i~-~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           31 RDVTELYLDGNQFT-LVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             TTCCEEECCSSCCC-SCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCc-hhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence            47899999999985 78854 48899999999999999977778899999999999999999977778899999999999


Q ss_pred             ecCCcccccCChhccCCCCCcEEeccccccc
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLT  112 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~  112 (140)
                      +++|.+....+..+..+++|+.+++++|++.
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          109 LHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            9999999666667888999999999999885

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=2.6e-16  Score=103.20  Aligned_cols=126  Identities=27%  Similarity=0.339  Sum_probs=107.5

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++|+.|++++|.+. .++.  +..+++|++|++++|.+++..+  +..+++|+.|++++|.++.  ...+..+++|+.|+
T Consensus        46 ~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~  118 (291)
T 1h6t_A           46 NSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLS  118 (291)
T ss_dssp             HTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--GGGGTTCTTCCEEE
T ss_pred             CcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC--ChhhccCCCCCEEE
Confidence            57899999999885 5543  3679999999999999985433  8899999999999999974  34488899999999


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  138 (140)
                      +++|.+.+.  ..+..+++|+.+++++|.+++.  ..+..+++|+.|++++|.+++.
T Consensus       119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~  171 (291)
T 1h6t_A          119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI  171 (291)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred             CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence            999999853  5678899999999999999855  6788999999999999988764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=3.4e-17  Score=118.92  Aligned_cols=119  Identities=25%  Similarity=0.353  Sum_probs=99.4

Q ss_pred             CCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccC
Q 032459           18 LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGN   97 (140)
Q Consensus        18 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~   97 (140)
                      ++...+..++.|+.|+|++|.+. .+|..+..+++|+.|++++|.++ ..|..+..+++|+.|++++|.+. ..|..+..
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            34445577889999999999998 77777778999999999999998 77888899999999999999998 66888899


Q ss_pred             CCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceecC
Q 032459           98 LAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC  140 (140)
Q Consensus        98 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  140 (140)
                      +++|++|++++|.++ .+|..++.+++|+.|++++|.+++.+|
T Consensus       292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred             CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCCh
Confidence            999999999999987 667779999999999999999887543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.69  E-value=5.5e-16  Score=94.70  Aligned_cols=112  Identities=22%  Similarity=0.294  Sum_probs=97.1

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++|+.|++++|.+. .++...+..+++|++|++++|.++...+..+..+++|+.|++++|.++...+..+..+++|+.++
T Consensus        28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            57899999999985 67776668899999999999999966666678999999999999999966666788899999999


Q ss_pred             ecCCcccccCChhccCCCCCcEEeccccccccc
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRA  114 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~  114 (140)
                      +++|.+.+..+..+..+++|+++++++|+++..
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            999999866556678899999999999998754

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.69  E-value=4.4e-16  Score=107.98  Aligned_cols=126  Identities=26%  Similarity=0.383  Sum_probs=58.5

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++|+.|++++|.+.+. +.  +..+++|++|++++|.+++..+  +..+++|+.|++++|.+....+  +..+++|+.++
T Consensus       243 ~~L~~L~l~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  315 (466)
T 1o6v_A          243 TNLTDLDLANNQISNL-AP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT  315 (466)
T ss_dssp             TTCSEEECCSSCCCCC-GG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred             CCCCEEECCCCccccc-hh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence            3444445544444321 11  2344555555555555542211  4445555555555555542211  44455555555


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  138 (140)
                      +++|.+.+..+  +..+++|+.+++++|.+++.  ..+..+++|+.|++++|.+++.
T Consensus       316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~  368 (466)
T 1o6v_A          316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL  368 (466)
T ss_dssp             CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBC
T ss_pred             CcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCcc
Confidence            55555543322  34445555555555554432  2344455555555555555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=5.4e-18  Score=123.04  Aligned_cols=114  Identities=25%  Similarity=0.467  Sum_probs=102.7

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++|+.|++++|.+. .+|..++ .++.|+.|+|++|.++ .+|..+..+++|+.|++++|.++ ..|..+..+++|+.|
T Consensus       223 l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L  298 (727)
T 4b8c_D          223 DQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF  298 (727)
T ss_dssp             CCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred             CCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence            467899999999985 8888875 7999999999999999 88999999999999999999999 678899999999999


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccc
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSI  119 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~  119 (140)
                      ++++|.+. ..|..+..+++|++|++++|.+++..|..+
T Consensus       299 ~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          299 YFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             ECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             ECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            99999997 668789999999999999999987666554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.68  E-value=8.4e-16  Score=93.47  Aligned_cols=106  Identities=21%  Similarity=0.311  Sum_probs=77.5

Q ss_pred             ceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEec
Q 032459            4 LLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR   83 (140)
Q Consensus         4 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   83 (140)
                      .+.++++++.+. .+|..+   .+.+++|++++|.+++..+..|..+++|+.|++++|.++...+..+..+++|+.|+++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            356777777764 567655   3677888888888876667777778888888888888775555566777888888888


Q ss_pred             CCcccccCChhccCCCCCcEEecccccccc
Q 032459           84 GNQLQGEIPEELGNLAELEMLWLQNNFLTR  113 (140)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~  113 (140)
                      +|++.+..+..+..+++|+++++++|+++.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            888775555567777788888888887753

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.67  E-value=1e-15  Score=109.13  Aligned_cols=127  Identities=24%  Similarity=0.361  Sum_probs=108.7

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      |++|+.|++++|.+. .++ . +..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.++..  ..+..+++|+.|
T Consensus        86 l~~L~~L~Ls~N~l~-~l~-~-l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L  158 (605)
T 1m9s_A           86 LKNLGWLFLDENKIK-DLS-S-LKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL  158 (605)
T ss_dssp             CTTCCEEECCSSCCC-CCT-T-STTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEE
T ss_pred             CCCCCEEECcCCCCC-CCh-h-hccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEE
Confidence            578999999999985 444 3 3779999999999999984 3 4578899999999999999854  678899999999


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  138 (140)
                      ++++|.+.+..+  +..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+.
T Consensus       159 ~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          159 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             ECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            999999986555  88899999999999999854  4688999999999999987653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=1e-15  Score=108.50  Aligned_cols=122  Identities=22%  Similarity=0.229  Sum_probs=92.8

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   82 (140)
                      .|+.|++++|.+. .+|.  +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++ .| .+..+++|+.|++
T Consensus       442 ~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence            4677888888775 4665  467888888888888888 778888888888888888888874 45 6778888888888


Q ss_pred             cCCcccccC-ChhccCCCCCcEEecccccccccCcc---cccCCCCCCeEEc
Q 032459           83 RGNQLQGEI-PEELGNLAELEMLWLQNNFLTRAIPS---SIFNLSSLSNLDL  130 (140)
Q Consensus        83 ~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~~---~~~~~~~L~~l~l  130 (140)
                      ++|.+.+.. |..+..+++|+.+++++|.+++..+.   .+..+++|+.|++
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            888888665 77788888888888888888755432   2334778887753

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.66  E-value=4.8e-16  Score=102.98  Aligned_cols=110  Identities=18%  Similarity=0.129  Sum_probs=85.3

Q ss_pred             CCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhc-cCCCccEEEecCCcccccCChhccCCCCCcE
Q 032459           25 HLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIG-NVTKLIRLYLRGNQLQGEIPEELGNLAELEM  103 (140)
Q Consensus        25 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~  103 (140)
                      .+++|++|++++|.+++..+..+..+++|+.|++++|.++...+..+. .++.|+.+++++|.+.+. + ....+++|++
T Consensus       118 ~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~  195 (317)
T 3o53_A          118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKT  195 (317)
T ss_dssp             CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCE
T ss_pred             ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCE
Confidence            356788888888888866666777888899999999888865555553 678899999999888744 2 2234788999


Q ss_pred             EecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459          104 LWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus       104 l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      +++++|.+++. +..+..+++|+.|++++|.+++
T Consensus       196 L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~  228 (317)
T 3o53_A          196 LDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL  228 (317)
T ss_dssp             EECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE
T ss_pred             EECCCCcCCcc-hhhhcccCcccEEECcCCcccc
Confidence            99999998854 4448888999999999998764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.66  E-value=9.6e-18  Score=111.65  Aligned_cols=83  Identities=20%  Similarity=0.179  Sum_probs=39.0

Q ss_pred             CCceEEEccCCeeccc-CCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecc-ccccC-cchhhccCCCcc
Q 032459            2 SSLLSIRFTNNTLFGE-LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD-DFSGT-IPKEIGNVTKLI   78 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~~~~~~~L~   78 (140)
                      ++|+.|++++|.+.+. ++.. +..+++|++|++++|.+++..+..+..+++|+.|++++| .++.. .+..+..+++|+
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGI-LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHH-HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCEEEccCCCcCHHHHHHH-HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            4455555555554322 2222 244555555555555555444444444555555555555 33321 223334444455


Q ss_pred             EEEecCC
Q 032459           79 RLYLRGN   85 (140)
Q Consensus        79 ~l~l~~~   85 (140)
                      .|++++|
T Consensus       172 ~L~l~~~  178 (336)
T 2ast_B          172 ELNLSWC  178 (336)
T ss_dssp             EEECCCC
T ss_pred             EEcCCCC
Confidence            5555444

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.65  E-value=2.6e-15  Score=91.65  Aligned_cols=104  Identities=20%  Similarity=0.304  Sum_probs=76.9

Q ss_pred             eEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecC
Q 032459            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG   84 (140)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~   84 (140)
                      +.++++++.+ +.+|..+   .+.|++|++++|.+++..|..|..+++|+.|++++|.++...+..+..+++|+.|++++
T Consensus        15 ~~l~~~~n~l-~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRL-ASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCC-SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCC-CccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            4567777776 4677765   36788888888888866677777788888888888888755445567778888888888


Q ss_pred             CcccccCChhccCCCCCcEEeccccccc
Q 032459           85 NQLQGEIPEELGNLAELEMLWLQNNFLT  112 (140)
Q Consensus        85 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~  112 (140)
                      |.+.+..+..+..+++|+++++++|++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            8887554455777788888888888775

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.65  E-value=1.7e-15  Score=105.06  Aligned_cols=126  Identities=26%  Similarity=0.450  Sum_probs=107.5

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++|+.|++++|.+. .++.  +..+++|+.|++++|.+++..+  +..+++|+.|++++|.+++..+  +..+++|+.+
T Consensus       264 l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  336 (466)
T 1o6v_A          264 LTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL  336 (466)
T ss_dssp             CTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred             CCCCCEEECCCCccC-cccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence            478999999999986 4444  4779999999999999985433  7789999999999999986544  6789999999


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      ++++|.+.+.  ..+..+++|+.+++++|.+++..|  +..+++|+.+++++|.+++
T Consensus       337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            9999998854  567889999999999999987665  8889999999999998876

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.65  E-value=2.9e-15  Score=91.07  Aligned_cols=107  Identities=21%  Similarity=0.190  Sum_probs=92.3

Q ss_pred             cccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecc
Q 032459           28 NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQ  107 (140)
Q Consensus        28 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~  107 (140)
                      ..+.+++++++++ .+|..+  .+.++.|++++|.++...+..+..+++|+.|++++|++.+..+..+..+++|++++++
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4678999999998 577665  3789999999999997778888999999999999999986666777889999999999


Q ss_pred             cccccccCcccccCCCCCCeEEcCCCccce
Q 032459          108 NNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus       108 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      +|.++...+..+..+++|+.|++++|++..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            999987766778899999999999998754

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.63  E-value=7.1e-15  Score=89.70  Aligned_cols=106  Identities=20%  Similarity=0.242  Sum_probs=89.3

Q ss_pred             ccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEeccc
Q 032459           29 LESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN  108 (140)
Q Consensus        29 L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~  108 (140)
                      -+.+++++++++ .+|..+.  +.++.|++++|.++...+..+..+++|+.|++++|++.+..+..+..+++|+++++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            477899999987 6777654  7899999999999877778888999999999999999866556678889999999999


Q ss_pred             ccccccCcccccCCCCCCeEEcCCCccce
Q 032459          109 NFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus       109 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      |.++...+..+..+++|+.|++++|++..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccc
Confidence            99986666668889999999999998753

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.62  E-value=4.3e-18  Score=105.88  Aligned_cols=109  Identities=26%  Similarity=0.288  Sum_probs=59.3

Q ss_pred             cCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcE
Q 032459           24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM  103 (140)
Q Consensus        24 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~  103 (140)
                      ..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ ..|..+..+++|+.+++++|++.+. + .+..+++|++
T Consensus        45 ~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~  119 (198)
T 1ds9_A           45 STLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNLRV  119 (198)
T ss_dssp             HHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSE
T ss_pred             hcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCE
Confidence            445566666666666653 44 4555566666666666655 3444444455566666666655531 2 3445555666


Q ss_pred             EecccccccccCc-ccccCCCCCCeEEcCCCccce
Q 032459          104 LWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus       104 l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      +++++|.+++..+ ..+..+++|+++++++|++++
T Consensus       120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             EECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            6666665543221 345555566666666665543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=4.9e-15  Score=105.01  Aligned_cols=107  Identities=21%  Similarity=0.271  Sum_probs=97.4

Q ss_pred             cccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecc
Q 032459           28 NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQ  107 (140)
Q Consensus        28 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~  107 (140)
                      .|+.|++++|.+++ +|. +..+++|+.|++++|.++ ..|..+..+++|+.|++++|.+++ .| .+..+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            58899999999984 676 889999999999999999 778899999999999999999985 45 78899999999999


Q ss_pred             cccccccC-cccccCCCCCCeEEcCCCccceec
Q 032459          108 NNFLTRAI-PSSIFNLSSLSNLDLSVNNLTGSL  139 (140)
Q Consensus       108 ~~~~~~~~-~~~~~~~~~L~~l~l~~n~~~~~~  139 (140)
                      +|.+++.. |..++.+++|+.|++++|.+++..
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            99999776 899999999999999999998754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.62  E-value=8.2e-17  Score=107.15  Aligned_cols=132  Identities=26%  Similarity=0.346  Sum_probs=68.2

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCC-ccccC-CCcCCcCCCCCCEEEeecc-ccccC-cchhhccCC-
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNN-MFHGK-IPSTLSNCKRLRNISLSLD-DFSGT-IPKEIGNVT-   75 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~-~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~~~~~~-   75 (140)
                      +++|++|++++|.+.+..+..+ ..+++|++|++++| .+++. .+..+..+++|+.|++++| .++.. .+..+..++ 
T Consensus       117 ~~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~  195 (336)
T 2ast_B          117 CSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE  195 (336)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred             CCCCCEEeCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence            3566677777766544444433 44666666666666 45431 3333445566666666666 55422 233444555 


Q ss_pred             CccEEEecCCc--cc-ccCChhccCCCCCcEEeccccc-ccccCcccccCCCCCCeEEcCCC
Q 032459           76 KLIRLYLRGNQ--LQ-GEIPEELGNLAELEMLWLQNNF-LTRAIPSSIFNLSSLSNLDLSVN  133 (140)
Q Consensus        76 ~L~~l~l~~~~--~~-~~~~~~~~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~n  133 (140)
                      +|+.+++++|.  ++ +..+..+..+++|+.+++++|. +++..+..+..+++|+.|++++|
T Consensus       196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            55555555552  22 1223333445555555555555 44444444455555555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.61  E-value=3e-16  Score=105.71  Aligned_cols=109  Identities=21%  Similarity=0.208  Sum_probs=51.6

Q ss_pred             CceEEEccCCeecccCCc----ccccCCC-cccEEEccCCccccCCCcCCcCC-----CCCCEEEeeccccccCcchhhc
Q 032459            3 SLLSIRFTNNTLFGELPP----NFCNHLS-NLESLFLKNNMFHGKIPSTLSNC-----KRLRNISLSLDDFSGTIPKEIG   72 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~~-----~~L~~l~l~~~~~~~~~~~~~~   72 (140)
                      +|++|++++|.+. ..+.    ..+..++ +|++|++++|.+++..+..+..+     ++|+.|++++|.++...+..+.
T Consensus        23 ~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           23 GVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            3566666666653 2222    2224455 56666666666654444434332     5555666655555543333222


Q ss_pred             ----cC-CCccEEEecCCcccccCChhcc----C-CCCCcEEeccccccc
Q 032459           73 ----NV-TKLIRLYLRGNQLQGEIPEELG----N-LAELEMLWLQNNFLT  112 (140)
Q Consensus        73 ----~~-~~L~~l~l~~~~~~~~~~~~~~----~-~~~l~~l~l~~~~~~  112 (140)
                          .. ++|+.|++++|.+.+..+..+.    . .++|+++++++|.++
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence                22 4555555555555433332221    1 234555555555444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.60  E-value=1.5e-16  Score=107.88  Aligned_cols=137  Identities=20%  Similarity=0.242  Sum_probs=100.9

Q ss_pred             CCceEEEccCCeec-ccCCc--ccccCCCcccEEEccCCcccc-----CCCcCCcCCCCCCEEEeeccccc----cCcch
Q 032459            2 SSLLSIRFTNNTLF-GELPP--NFCNHLSNLESLFLKNNMFHG-----KIPSTLSNCKRLRNISLSLDDFS----GTIPK   69 (140)
Q Consensus         2 ~~L~~L~l~~~~~~-~~~~~--~~~~~l~~L~~L~l~~~~l~~-----~~~~~~~~~~~L~~l~l~~~~~~----~~~~~   69 (140)
                      ++|++|++++|.+. ..++.  ..+..+++|++|++++|.++.     ..+..+..+++|+.|++++|.++    ...+.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            57888888888775 22331  223567788889998888772     23336677888999999999885    35567


Q ss_pred             hhccCCCccEEEecCCccccc----CChhcc--CCCCCcEEecccccccc----cCcccc-cCCCCCCeEEcCCCcccee
Q 032459           70 EIGNVTKLIRLYLRGNQLQGE----IPEELG--NLAELEMLWLQNNFLTR----AIPSSI-FNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus        70 ~~~~~~~L~~l~l~~~~~~~~----~~~~~~--~~~~l~~l~l~~~~~~~----~~~~~~-~~~~~L~~l~l~~n~~~~~  138 (140)
                      .+..+++|+.|++++|.+.+.    .+..+.  .+++|+++++++|.++.    .++..+ .++++|+.|++++|.+++.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            777888999999999988754    234443  37889999999999886    356555 5678999999999988764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.59  E-value=2.8e-17  Score=102.21  Aligned_cols=129  Identities=21%  Similarity=0.289  Sum_probs=106.0

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++|++|++++|.+. .+| . +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++ .+ .+..+++|+.+
T Consensus        47 l~~L~~L~ls~n~l~-~l~-~-~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L  120 (198)
T 1ds9_A           47 LKACKHLALSTNNIE-KIS-S-LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVL  120 (198)
T ss_dssp             TTTCSEEECSEEEES-CCC-C-HHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEE
T ss_pred             CCCCCEEECCCCCCc-ccc-c-cccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEE
Confidence            478999999999986 477 4 477899999999999998 677777777999999999999984 44 67788999999


Q ss_pred             EecCCcccccCC-hhccCCCCCcEEecccccccccCcc----------cccCCCCCCeEEcCCCccce
Q 032459           81 YLRGNQLQGEIP-EELGNLAELEMLWLQNNFLTRAIPS----------SIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        81 ~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~----------~~~~~~~L~~l~l~~n~~~~  137 (140)
                      ++++|.+.+..+ ..+..+++|+++++++|.+++..+.          .+..+++|+.|+  ++.+++
T Consensus       121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            999999875332 4678899999999999999765443          367889999987  666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.59  E-value=9.7e-17  Score=108.83  Aligned_cols=41  Identities=32%  Similarity=0.336  Sum_probs=17.9

Q ss_pred             ccCCCCCcEEeccccccc----ccCcccccCCCCCCeEEcCCCcc
Q 032459           95 LGNLAELEMLWLQNNFLT----RAIPSSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus        95 ~~~~~~l~~l~l~~~~~~----~~~~~~~~~~~~L~~l~l~~n~~  135 (140)
                      +..+++|++|++++|.++    ..++..+..+++|+.|++++|.+
T Consensus       212 l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i  256 (386)
T 2ca6_A          212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  256 (386)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence            334444444444444443    22333334444444444444444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.59  E-value=1e-14  Score=89.03  Aligned_cols=109  Identities=20%  Similarity=0.177  Sum_probs=91.4

Q ss_pred             cCCCcccEEEccCCccccCCCcCCcCCC-CCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCc
Q 032459           24 NHLSNLESLFLKNNMFHGKIPSTLSNCK-RLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELE  102 (140)
Q Consensus        24 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~  102 (140)
                      ..+++|++|++++|.++ .++. +..+. +|+.|++++|.++..  ..+..+++|+.+++++|.+.+..+..+..+++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            46789999999999998 4554 44544 999999999999854  6788899999999999999865445568899999


Q ss_pred             EEecccccccccCcc--cccCCCCCCeEEcCCCccce
Q 032459          103 MLWLQNNFLTRAIPS--SIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus       103 ~l~l~~~~~~~~~~~--~~~~~~~L~~l~l~~n~~~~  137 (140)
                      ++++++|.++. .+.  .+..+++|+.+++++|++++
T Consensus        92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~  127 (176)
T 1a9n_A           92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN  127 (176)
T ss_dssp             EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC
Confidence            99999999964 344  78899999999999999864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.59  E-value=5.4e-16  Score=104.44  Aligned_cols=112  Identities=26%  Similarity=0.313  Sum_probs=51.3

Q ss_pred             CceEEEccCCeecccCCcccc---cC-CCcccEEEccCCccccCCCcCCc----CC-CCCCEEEeeccccccCcchhhc-
Q 032459            3 SLLSIRFTNNTLFGELPPNFC---NH-LSNLESLFLKNNMFHGKIPSTLS----NC-KRLRNISLSLDDFSGTIPKEIG-   72 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~---~~-l~~L~~L~l~~~~l~~~~~~~~~----~~-~~L~~l~l~~~~~~~~~~~~~~-   72 (140)
                      +|++|++++|.+.+..+..+.   .. .+.|++|++++|.+++..+..+.    .+ ++|+.|++++|.++...+..+. 
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            566666666665433222221   11 25666666666666543333222    22 4566666666555543332222 


Q ss_pred             ---c-CCCccEEEecCCcccccCChh----ccCCC-CCcEEeccccccccc
Q 032459           73 ---N-VTKLIRLYLRGNQLQGEIPEE----LGNLA-ELEMLWLQNNFLTRA  114 (140)
Q Consensus        73 ---~-~~~L~~l~l~~~~~~~~~~~~----~~~~~-~l~~l~l~~~~~~~~  114 (140)
                         . ..+|+.|++++|.+.+.....    +...+ +|+++++++|.+++.
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~  182 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK  182 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence               1 135555555555554322222    12222 455555555554433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.59  E-value=1.1e-14  Score=103.24  Aligned_cols=102  Identities=22%  Similarity=0.278  Sum_probs=67.9

Q ss_pred             CCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCC----
Q 032459           26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAEL----  101 (140)
Q Consensus        26 l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l----  101 (140)
                      +++|+.|++++|.+++ +|.   .+++|+.|++++|.++. .|. +.  ++|+.|++++|.++ ..|. +..  +|    
T Consensus       139 l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~  206 (571)
T 3cvr_A          139 PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSE  206 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC---------
T ss_pred             CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhccc
Confidence            4455555565555553 333   34567777777777664 444 43  67788888888777 4444 332  56    


Q ss_pred             ---cEEecccccccccCcccccCCCCCCeEEcCCCccceecC
Q 032459          102 ---EMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC  140 (140)
Q Consensus       102 ---~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  140 (140)
                         +.+++++|.++ .+|..+..+++|+.|++++|++++.+|
T Consensus       207 ~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          207 ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             -CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             ccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence               88899999887 467777779999999999999887543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.57  E-value=5.7e-14  Score=97.32  Aligned_cols=117  Identities=21%  Similarity=0.269  Sum_probs=77.0

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++|+.|++++|.+. .+| . +..+++|++|++++|.+++ ++  +..+++|+.|++++|.+++. +  +..+++|+.++
T Consensus        42 ~~L~~L~Ls~n~l~-~~~-~-l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~  112 (457)
T 3bz5_A           42 ATLTSLDCHNSSIT-DMT-G-IEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN  112 (457)
T ss_dssp             TTCCEEECCSSCCC-CCT-T-GGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred             CCCCEEEccCCCcc-cCh-h-hcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence            57788888888775 344 3 3667788888888888774 33  66777788888887777643 2  56677777777


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCC
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVN  133 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n  133 (140)
                      +++|.+.+. +  +..+++|+++++++|.+++. +  +..+++|+++++++|
T Consensus       113 L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          113 CDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLN  158 (457)
T ss_dssp             CCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTC
T ss_pred             CCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCC
Confidence            777777643 2  55667777777777776643 1  344444455544444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.56  E-value=5.2e-14  Score=97.51  Aligned_cols=14  Identities=29%  Similarity=0.249  Sum_probs=7.9

Q ss_pred             CCceEEEccCCeec
Q 032459            2 SSLLSIRFTNNTLF   15 (140)
Q Consensus         2 ~~L~~L~l~~~~~~   15 (140)
                      ++|++|++++|.+.
T Consensus       127 ~~L~~L~l~~N~l~  140 (457)
T 3bz5_A          127 PLLTYLNCARNTLT  140 (457)
T ss_dssp             TTCCEEECTTSCCS
T ss_pred             CcCCEEECCCCccc
Confidence            45556666665553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.55  E-value=1.1e-13  Score=98.07  Aligned_cols=54  Identities=17%  Similarity=0.257  Sum_probs=23.1

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccc
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS   64 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~   64 (140)
                      +++.|++++|.+. .+|..+   +++|+.|++++|.++ .+|   ..+++|+.|++++|.++
T Consensus        60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~  113 (571)
T 3cvr_A           60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS  113 (571)
T ss_dssp             TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS
T ss_pred             CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC
Confidence            3445555555443 244433   134444444444444 333   12334444444444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.55  E-value=1.8e-16  Score=109.51  Aligned_cols=87  Identities=23%  Similarity=0.333  Sum_probs=51.4

Q ss_pred             CCCCEEEeeccccccC----cchhhccCCCccEEEecCCcccccCChhccC-----CCCCcEEecccccccc----cCcc
Q 032459           51 KRLRNISLSLDDFSGT----IPKEIGNVTKLIRLYLRGNQLQGEIPEELGN-----LAELEMLWLQNNFLTR----AIPS  117 (140)
Q Consensus        51 ~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-----~~~l~~l~l~~~~~~~----~~~~  117 (140)
                      ++|+.|++++|.++..    .+..+..+++|+.+++++|.+.+..+..+..     .++|+++++++|.+++    ..+.
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  392 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  392 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence            3555555555555432    2333444567777777777665443333321     4577777777777764    4455


Q ss_pred             cccCCCCCCeEEcCCCccce
Q 032459          118 SIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus       118 ~~~~~~~L~~l~l~~n~~~~  137 (140)
                      .+..+++|++|++++|.+++
T Consensus       393 ~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          393 TLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHCCCCCEEECCSSSCCH
T ss_pred             HHHhCCCccEEECCCCCCCH
Confidence            56667777777777777654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.51  E-value=7.6e-16  Score=104.17  Aligned_cols=136  Identities=17%  Similarity=0.110  Sum_probs=90.5

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCC-----cCCCCCCEEEeeccccccC----cchhhc
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTL-----SNCKRLRNISLSLDDFSGT----IPKEIG   72 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~-----~~~~~L~~l~l~~~~~~~~----~~~~~~   72 (140)
                      ++|++|++++|.+.+.....+...+++|+.|++++|.+++.....+     ...++|+.|++++|.++..    .+..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            3677777777766433333333445677788888887764333333     2357788888888887642    233445


Q ss_pred             cCCCccEEEecCCcccccC----ChhccCCCCCcEEecccccccccC----cccccCCCCCCeEEcCCCccce
Q 032459           73 NVTKLIRLYLRGNQLQGEI----PEELGNLAELEMLWLQNNFLTRAI----PSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        73 ~~~~L~~l~l~~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      ..++|+.|++++|.+.+..    ...+...++|+.|++++|.+++..    +..+...++|++|++++|.+++
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            6778888888888876433    344566778888999888887533    2344456888999999888764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.50  E-value=2.3e-13  Score=91.33  Aligned_cols=134  Identities=17%  Similarity=0.149  Sum_probs=81.8

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCC-cCCcCCCCCCE-EEeeccccccCcchhhccCCCccE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIP-STLSNCKRLRN-ISLSLDDFSGTIPKEIGNVTKLIR   79 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~-l~l~~~~~~~~~~~~~~~~~~L~~   79 (140)
                      +++++|++++|.+. .+|...|..+++|++|++++|.+.+.++ ..|..+++++. +.+..|.+....+..+..+++|+.
T Consensus        30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            46788888888874 7777767888888888888888754444 45666777665 445567777566677778888888


Q ss_pred             EEecCCcccccCChhccCCCCCcEEecccc-cccccCcccccCCC-CCCeEEcCCCccc
Q 032459           80 LYLRGNQLQGEIPEELGNLAELEMLWLQNN-FLTRAIPSSIFNLS-SLSNLDLSVNNLT  136 (140)
Q Consensus        80 l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~~~-~L~~l~l~~n~~~  136 (140)
                      +++++|++....+..+....++..+++.++ .+....+..+..+. .++.|++++|.++
T Consensus       109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X          109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            888888776443333333334444444332 23322222333322 3455555555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.50  E-value=3.3e-15  Score=103.15  Aligned_cols=35  Identities=29%  Similarity=0.385  Sum_probs=14.5

Q ss_pred             ccEEEccCCcccc----CCCcCCcCCCCCCEEEeecccc
Q 032459           29 LESLFLKNNMFHG----KIPSTLSNCKRLRNISLSLDDF   63 (140)
Q Consensus        29 L~~L~l~~~~l~~----~~~~~~~~~~~L~~l~l~~~~~   63 (140)
                      |++|++++|.+++    .++..+..+++|+.|++++|.+
T Consensus        87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  125 (461)
T 1z7x_W           87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  125 (461)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC
Confidence            4444444444432    1233333444444444444444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.49  E-value=1.6e-13  Score=92.08  Aligned_cols=135  Identities=19%  Similarity=0.159  Sum_probs=96.2

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccE-EEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCC----
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLES-LFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVT----   75 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~-L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~----   75 (140)
                      |++|++|++++|.+.+.++...|..++++.+ +.+..|.++...+..|..+++|+.+++++|.+....+..+....    
T Consensus        53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~  132 (350)
T 4ay9_X           53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL  132 (350)
T ss_dssp             CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEE
T ss_pred             CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhh
Confidence            5789999999999877888888888888776 56677888877778888899999999999888643222222222    


Q ss_pred             ----------------------CccEEEecCCcccccCChhccCCCCCcEEeccc-ccccccCcccccCCCCCCeEEcCC
Q 032459           76 ----------------------KLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN-NFLTRAIPSSIFNLSSLSNLDLSV  132 (140)
Q Consensus        76 ----------------------~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~~~~~~~~~~~L~~l~l~~  132 (140)
                                            .++.+++++|+++.. +.......+++++++.+ |.++...++.+..+++|++|++++
T Consensus       133 l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~  211 (350)
T 4ay9_X          133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR  211 (350)
T ss_dssp             EEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred             hhhccccccccccccchhhcchhhhhhccccccccCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence                                  355566666666532 33333445677777764 455544446778889999999999


Q ss_pred             Cccc
Q 032459          133 NNLT  136 (140)
Q Consensus       133 n~~~  136 (140)
                      |.++
T Consensus       212 N~l~  215 (350)
T 4ay9_X          212 TRIH  215 (350)
T ss_dssp             SCCC
T ss_pred             CCcC
Confidence            9875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.49  E-value=3.6e-13  Score=96.38  Aligned_cols=80  Identities=28%  Similarity=0.375  Sum_probs=64.1

Q ss_pred             CCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEc
Q 032459           51 KRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDL  130 (140)
Q Consensus        51 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l  130 (140)
                      ++|+.|++++|.+++ .|   ..+++|+.|++++|.+. ..|.   .+++|+.+++++|.++ .+|..+..+++|+.|++
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            667888888887773 34   34578889999998887 3344   5688999999999998 66888999999999999


Q ss_pred             CCCccceec
Q 032459          131 SVNNLTGSL  139 (140)
Q Consensus       131 ~~n~~~~~~  139 (140)
                      ++|++++.+
T Consensus       292 ~~N~l~~~~  300 (622)
T 3g06_A          292 EGNPLSERT  300 (622)
T ss_dssp             CSCCCCHHH
T ss_pred             cCCCCCCcC
Confidence            999987654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.48  E-value=8e-13  Score=91.55  Aligned_cols=120  Identities=27%  Similarity=0.364  Sum_probs=64.9

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   82 (140)
                      +|++|++++|.+. .+| . +..+++|++|++++|.+++ +|..+   ++|+.|++++|.+++ .| .+..+++|+.+++
T Consensus       132 ~L~~L~L~~n~l~-~lp-~-~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          132 LLEYLGVSNNQLE-KLP-E-LQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TCCEEECCSSCCS-SCC-C-CTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCEEECcCCCCC-CCc-c-cCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence            5566666666654 355 2 3556666666666666652 33322   356666666666553 33 3555666666666


Q ss_pred             cCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      ++|.+.+ .|..   .++++++++++|.++ .+| .++.+++|+.|++++|.+++
T Consensus       203 ~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          203 DNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             CSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS
T ss_pred             CCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc
Confidence            6666553 2211   134555555555554 333 25555666666666665543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.48  E-value=2.9e-13  Score=90.57  Aligned_cols=103  Identities=24%  Similarity=0.285  Sum_probs=74.2

Q ss_pred             EEEccCC-eecccCCcccccCCCcccEEEccC-CccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEec
Q 032459            6 SIRFTNN-TLFGELPPNFCNHLSNLESLFLKN-NMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR   83 (140)
Q Consensus         6 ~L~l~~~-~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   83 (140)
                      .++.+++ .+ ..+|. + ..+++|++|+|++ |.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|+++
T Consensus        12 ~v~~~~~n~l-~~ip~-l-~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGAL-DSLHH-L-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCC-TTTTT-S-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCC-CccCC-C-CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            3566666 55 36777 3 6677888888885 88876666677788888888888888876666777788888888888


Q ss_pred             CCcccccCChhccCCCCCcEEeccccccc
Q 032459           84 GNQLQGEIPEELGNLAELEMLWLQNNFLT  112 (140)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~  112 (140)
                      +|++.+..+..+..+. |+.|++.+|.+.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            8888754444444444 888888888775

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.43  E-value=3.2e-12  Score=88.57  Aligned_cols=117  Identities=26%  Similarity=0.356  Sum_probs=54.9

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   82 (140)
                      +|++|++++|.+.+ +|..    +++|++|++++|.+++ ++..   .++|+.|++++|.+++ .| .+..+++|+.+++
T Consensus        92 ~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l  160 (454)
T 1jl5_A           92 HLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV  160 (454)
T ss_dssp             TCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence            45555555555432 3321    2344444444444442 1111   1355555555555553 33 3555555566666


Q ss_pred             cCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccc
Q 032459           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (140)
                      ++|.+.+ .|..   ..+|+++++++|.+++ .| .+..+++|+.+++++|.++
T Consensus       161 ~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~  208 (454)
T 1jl5_A          161 DNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK  208 (454)
T ss_dssp             CSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred             CCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC
Confidence            5555542 2221   2345555555555543 22 3455555555555555444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.43  E-value=9.7e-13  Score=88.01  Aligned_cols=103  Identities=19%  Similarity=0.187  Sum_probs=73.0

Q ss_pred             EEEccCC-ccccCCCcCCcCCCCCCEEEeec-cccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEeccc
Q 032459           31 SLFLKNN-MFHGKIPSTLSNCKRLRNISLSL-DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN  108 (140)
Q Consensus        31 ~L~l~~~-~l~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~  108 (140)
                      .++..++ +++ .+|. +..+.+|+.|++++ |.++...+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3566666 676 5666 77777788888875 777755556777777888888888877766667777777888888888


Q ss_pred             ccccccCcccccCCCCCCeEEcCCCccc
Q 032459          109 NFLTRAIPSSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus       109 ~~~~~~~~~~~~~~~~L~~l~l~~n~~~  136 (140)
                      |.++...+..+..++ |+.|++.+|++.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            877755444444444 778888777664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.39  E-value=6.2e-12  Score=90.09  Aligned_cols=34  Identities=18%  Similarity=0.261  Sum_probs=14.5

Q ss_pred             CcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccc
Q 032459           27 SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS   64 (140)
Q Consensus        27 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~   64 (140)
                      ++|++|++++|.++ .+|.   .+++|+.|++++|.++
T Consensus        81 ~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~  114 (622)
T 3g06_A           81 PELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT  114 (622)
T ss_dssp             TTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred             CCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence            44444444444444 2222   2344444444444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.34  E-value=4.5e-14  Score=95.53  Aligned_cols=136  Identities=18%  Similarity=0.129  Sum_probs=100.6

Q ss_pred             CCceEEEccCCeecccCC----cccccCCCcccEEEccCCccccCCCcCCc-CCCCCCEEEeeccccccCcchhhc----
Q 032459            2 SSLLSIRFTNNTLFGELP----PNFCNHLSNLESLFLKNNMFHGKIPSTLS-NCKRLRNISLSLDDFSGTIPKEIG----   72 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~----   72 (140)
                      ++|+.|++++|.+.....    ..+....+.|++|++++|.+++.....+. .+++|+.|++++|.++......+.    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            578999999999853322    22222347999999999998754333332 356899999999999754444432    


Q ss_pred             -cCCCccEEEecCCcccccC----ChhccCCCCCcEEecccccccccC----cccccCCCCCCeEEcCCCccce
Q 032459           73 -NVTKLIRLYLRGNQLQGEI----PEELGNLAELEMLWLQNNFLTRAI----PSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        73 -~~~~L~~l~l~~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                       ..+.|+.|++++|.+++..    +..+...++|++|++++|.+++..    +..+...++|++|++++|.+++
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence             4578999999999987533    334467899999999999997543    4556677899999999999875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.34  E-value=8.2e-12  Score=83.08  Aligned_cols=84  Identities=14%  Similarity=0.097  Sum_probs=56.0

Q ss_pred             CCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCc-EEecccccccccCcccccCCCCCCeE
Q 032459           50 CKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELE-MLWLQNNFLTRAIPSSIFNLSSLSNL  128 (140)
Q Consensus        50 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~-~l~l~~~~~~~~~~~~~~~~~~L~~l  128 (140)
                      +++|+.+++..|.++...+.+|..+.+|+.+.+.++ +.......|..+.+|+ .+.+.. .++...+.+|..+++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            456777777776666555566777777777777765 5544456666777777 777766 5555556677777777777


Q ss_pred             EcCCCcc
Q 032459          129 DLSVNNL  135 (140)
Q Consensus       129 ~l~~n~~  135 (140)
                      +++.|.+
T Consensus       303 ~l~~n~i  309 (329)
T 3sb4_A          303 LATGDKI  309 (329)
T ss_dssp             EECSSCC
T ss_pred             EeCCCcc
Confidence            7766554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.28  E-value=2.3e-13  Score=96.56  Aligned_cols=90  Identities=18%  Similarity=0.148  Sum_probs=56.6

Q ss_pred             CCCCCCEEEeeccc--cccCcchhhc-cCCCccEEEecCCcccccC-ChhccCCCCCcEEecccccccccC-cccccCCC
Q 032459           49 NCKRLRNISLSLDD--FSGTIPKEIG-NVTKLIRLYLRGNQLQGEI-PEELGNLAELEMLWLQNNFLTRAI-PSSIFNLS  123 (140)
Q Consensus        49 ~~~~L~~l~l~~~~--~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~~  123 (140)
                      .+++|+.|+++.+.  ++......+. .+++|+.|++++|.+++.. +..+..+++|++|++++|.+++.. +..+..++
T Consensus       434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~  513 (592)
T 3ogk_B          434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLP  513 (592)
T ss_dssp             HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCS
T ss_pred             hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcC
Confidence            35566666665332  3322222232 3667888888888776433 334456788888888888876442 33445678


Q ss_pred             CCCeEEcCCCcccee
Q 032459          124 SLSNLDLSVNNLTGS  138 (140)
Q Consensus       124 ~L~~l~l~~n~~~~~  138 (140)
                      +|+.|++++|.+++.
T Consensus       514 ~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          514 SLRYLWVQGYRASMT  528 (592)
T ss_dssp             SCCEEEEESCBCCTT
T ss_pred             ccCeeECcCCcCCHH
Confidence            888888888887653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.26  E-value=8.4e-11  Score=78.20  Aligned_cols=103  Identities=16%  Similarity=0.024  Sum_probs=90.0

Q ss_pred             CCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCcc-EEEecCCcccccCChhccCCCCCcEE
Q 032459           26 LSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLI-RLYLRGNQLQGEIPEELGNLAELEML  104 (140)
Q Consensus        26 l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~l~~l  104 (140)
                      +++|+.+++.+|.++...+..|..+.+|+.+++..| +....+.+|..+.+|+ .+.+.+ .+....+..|..+++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            678999999999898666778999999999999998 7656678899999999 999988 6665667889999999999


Q ss_pred             ecccccccccCcccccCCCCCCeEEc
Q 032459          105 WLQNNFLTRAIPSSIFNLSSLSNLDL  130 (140)
Q Consensus       105 ~l~~~~~~~~~~~~~~~~~~L~~l~l  130 (140)
                      ++..|.++...+.+|..+++|+.++.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            99999998888889999999999864

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.17  E-value=1.9e-11  Score=86.75  Aligned_cols=34  Identities=12%  Similarity=0.132  Sum_probs=14.8

Q ss_pred             CCCCCCEEEeeccccccCcchhhccCCCccEEEec
Q 032459           49 NCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR   83 (140)
Q Consensus        49 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   83 (140)
                      .+++|+.|++.++.+.+ .+..+..+++|+.++++
T Consensus       218 ~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          218 NCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG  251 (592)
T ss_dssp             HCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred             hCCCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence            34445555555544432 23333344444444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.16  E-value=9.9e-13  Score=93.32  Aligned_cols=87  Identities=18%  Similarity=0.148  Sum_probs=54.9

Q ss_pred             CCCCCCEEEeeccccccCcchhhcc-CCCccEEEecCCcccccCChhc-cCCCCCcEEecccccccccCcc-cccCCCCC
Q 032459           49 NCKRLRNISLSLDDFSGTIPKEIGN-VTKLIRLYLRGNQLQGEIPEEL-GNLAELEMLWLQNNFLTRAIPS-SIFNLSSL  125 (140)
Q Consensus        49 ~~~~L~~l~l~~~~~~~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~-~~~~~l~~l~l~~~~~~~~~~~-~~~~~~~L  125 (140)
                      .+++|+.|++++ .++......+.. +++|+.|++++|.+++..+..+ ..+++|+++++++|.+++.... .+..+++|
T Consensus       430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L  508 (594)
T 2p1m_B          430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM  508 (594)
T ss_dssp             HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred             hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence            455666666654 343333333333 6778888888877765444444 4578888888888887544333 33457788


Q ss_pred             CeEEcCCCccc
Q 032459          126 SNLDLSVNNLT  136 (140)
Q Consensus       126 ~~l~l~~n~~~  136 (140)
                      +.|++++|.++
T Consensus       509 ~~L~l~~~~~~  519 (594)
T 2p1m_B          509 RSLWMSSCSVS  519 (594)
T ss_dssp             SEEEEESSCCB
T ss_pred             CEEeeeCCCCC
Confidence            88888888764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.05  E-value=2.5e-11  Score=74.61  Aligned_cols=114  Identities=16%  Similarity=0.131  Sum_probs=86.5

Q ss_pred             cCCCcccEEEccCC-ccccC----CCcCCcCCCCCCEEEeeccccccCc----chhhccCCCccEEEecCCcccccC---
Q 032459           24 NHLSNLESLFLKNN-MFHGK----IPSTLSNCKRLRNISLSLDDFSGTI----PKEIGNVTKLIRLYLRGNQLQGEI---   91 (140)
Q Consensus        24 ~~l~~L~~L~l~~~-~l~~~----~~~~~~~~~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~~~~---   91 (140)
                      ...+.|++|++++| .+.+.    +...+...++|+.|++++|.+....    ...+...+.|+.|++++|.+.+..   
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            56789999999999 88743    3344556789999999999987433    334455678999999999987543   


Q ss_pred             -ChhccCCCCCcEEec--ccccccccC----cccccCCCCCCeEEcCCCccce
Q 032459           92 -PEELGNLAELEMLWL--QNNFLTRAI----PSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        92 -~~~~~~~~~l~~l~l--~~~~~~~~~----~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                       ...+...+.|+++++  ++|.+.+..    ...+...++|++|++++|.++.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence             345667788999999  889987643    3445566899999999998753

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.02  E-value=2.8e-10  Score=76.73  Aligned_cols=63  Identities=19%  Similarity=0.180  Sum_probs=28.1

Q ss_pred             CCCccEEEecCCcccccCChhcc---CCCCCcEEecccccccccCc----ccccCCCCCCeEEcCCCccc
Q 032459           74 VTKLIRLYLRGNQLQGEIPEELG---NLAELEMLWLQNNFLTRAIP----SSIFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        74 ~~~L~~l~l~~~~~~~~~~~~~~---~~~~l~~l~l~~~~~~~~~~----~~~~~~~~L~~l~l~~n~~~  136 (140)
                      +++|+.|++.+|.+.+..+..+.   .+++|++|+++.|.+++..+    ..+..+++|+.|+++.|.++
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            34555555555544322211111   23455555555555543221    12233455566666555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.00  E-value=5.1e-11  Score=84.59  Aligned_cols=133  Identities=16%  Similarity=0.191  Sum_probs=77.2

Q ss_pred             CCCceEEEccCCeecccCC--------------cccccCCCcccEEEccCCccccCCCcCCc-CCCCCCEEEeecc-ccc
Q 032459            1 MSSLLSIRFTNNTLFGELP--------------PNFCNHLSNLESLFLKNNMFHGKIPSTLS-NCKRLRNISLSLD-DFS   64 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~--------------~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~l~l~~~-~~~   64 (140)
                      +++|+.|++.++.....+.              ..+...+++|++|++++|.+++..+..+. .+++|+.|++.+| .++
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~  144 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS  144 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred             CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence            4677788887765432221              11224567788888888777655444443 4677888888777 343


Q ss_pred             cC-cchhhccCCCccEEEecCCcccccCChhcc----CCCCCcEEeccccc--cccc-CcccccCCCCCCeEEcCCC
Q 032459           65 GT-IPKEIGNVTKLIRLYLRGNQLQGEIPEELG----NLAELEMLWLQNNF--LTRA-IPSSIFNLSSLSNLDLSVN  133 (140)
Q Consensus        65 ~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~----~~~~l~~l~l~~~~--~~~~-~~~~~~~~~~L~~l~l~~n  133 (140)
                      .. .+.....+++|+.|++++|.+++..+..+.    .+++|+.+++++|.  ++.. .......+++|+.|++++|
T Consensus       145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            22 223334577778888877776654433332    45677777777665  2111 1112234567777777665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.90  E-value=1.6e-08  Score=69.10  Aligned_cols=88  Identities=16%  Similarity=0.168  Sum_probs=44.5

Q ss_pred             CcCCcCCCCCCEEEeeccccc-----cCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCccc
Q 032459           44 PSTLSNCKRLRNISLSLDDFS-----GTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSS  118 (140)
Q Consensus        44 ~~~~~~~~~L~~l~l~~~~~~-----~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~  118 (140)
                      ...|..+.+|+.+.+..+...     ...+..|..+.+|+.+.+.+ .+.......|..+.+|+.+.+..+ ++.....+
T Consensus       264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a  341 (401)
T 4fdw_A          264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA  341 (401)
T ss_dssp             TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred             hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence            444555555555555554332     12334455555555555553 233333344555566666666433 44344455


Q ss_pred             ccCCCCCCeEEcCCCc
Q 032459          119 IFNLSSLSNLDLSVNN  134 (140)
Q Consensus       119 ~~~~~~L~~l~l~~n~  134 (140)
                      |..+ +|+.+++.+|.
T Consensus       342 F~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          342 FNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             SSSS-CCCEEEECCSS
T ss_pred             CCCC-CCCEEEEcCCC
Confidence            5555 66666666553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.85  E-value=2.4e-09  Score=64.98  Aligned_cols=84  Identities=7%  Similarity=0.087  Sum_probs=61.8

Q ss_pred             CcccEEEccCCccccCCCcCCcCCCCCCEEEeeccc-cccCcchhhccC----CCccEEEecCCc-ccccCChhccCCCC
Q 032459           27 SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDD-FSGTIPKEIGNV----TKLIRLYLRGNQ-LQGEIPEELGNLAE  100 (140)
Q Consensus        27 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~----~~L~~l~l~~~~-~~~~~~~~~~~~~~  100 (140)
                      ..|+.||+++|.+++.....+..+++|+.|++++|. ++...-..++.+    ++|+.|++++|. +++.....+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            368888888888887666667788888888888885 654444445543    368888888874 77665666777888


Q ss_pred             CcEEeccccc
Q 032459          101 LEMLWLQNNF  110 (140)
Q Consensus       101 l~~l~l~~~~  110 (140)
                      |++|++++|+
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            8888888876

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.85  E-value=6.6e-09  Score=70.10  Aligned_cols=133  Identities=14%  Similarity=0.153  Sum_probs=87.7

Q ss_pred             CCCceEEEccCCeec---------ccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhh
Q 032459            1 MSSLLSIRFTNNTLF---------GELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEI   71 (140)
Q Consensus         1 l~~L~~L~l~~~~~~---------~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~   71 (140)
                      +++|+.|.+......         +.+. .+...+|.|+.|.+.++.-. ..+. + .+++|+.|.+..+.+.......+
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l  213 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDI  213 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred             cchhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence            368889988654221         0111 23367899999999987311 2333 3 37899999999888764333344


Q ss_pred             c--cCCCccEEEecCC--cccccC-----Chhc--cCCCCCcEEecccccccccCccccc---CCCCCCeEEcCCCccce
Q 032459           72 G--NVTKLIRLYLRGN--QLQGEI-----PEEL--GNLAELEMLWLQNNFLTRAIPSSIF---NLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        72 ~--~~~~L~~l~l~~~--~~~~~~-----~~~~--~~~~~l~~l~l~~~~~~~~~~~~~~---~~~~L~~l~l~~n~~~~  137 (140)
                      .  .+++|+.|+++.+  ...+..     ...+  ..+++|++|++.+|.+++..+..+.   .+++|+.|+++.|.+++
T Consensus       214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            3  6899999998632  211110     1122  2478999999999988754444443   57899999999998876

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.84  E-value=3.9e-08  Score=67.19  Aligned_cols=64  Identities=11%  Similarity=0.058  Sum_probs=31.0

Q ss_pred             hhhccCCCccEEEecCCccc-----ccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCC
Q 032459           69 KEIGNVTKLIRLYLRGNQLQ-----GEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVN  133 (140)
Q Consensus        69 ~~~~~~~~L~~l~l~~~~~~-----~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n  133 (140)
                      .+|..+.+|+.+.+.++.+.     ......|..+++|+.+.+.. .++.....+|..+++|+.+.+..+
T Consensus       265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred             hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence            34444555555555444332     12234444555555555552 244344455555666666665443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.81  E-value=2.6e-09  Score=64.84  Aligned_cols=88  Identities=11%  Similarity=0.026  Sum_probs=70.8

Q ss_pred             CCCCCEEEeeccccccCcchhhccCCCccEEEecCCc-ccccCChhccCC----CCCcEEeccccc-ccccCcccccCCC
Q 032459           50 CKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ-LQGEIPEELGNL----AELEMLWLQNNF-LTRAIPSSIFNLS  123 (140)
Q Consensus        50 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~----~~l~~l~l~~~~-~~~~~~~~~~~~~  123 (140)
                      -..|+.|+++++.++...-..+..+++|+.|++++|. +++.....+...    ++|++|++++|. +|+.....+..++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            3579999999999886666777889999999999985 776655666653    479999999986 8876667778899


Q ss_pred             CCCeEEcCCCc-cce
Q 032459          124 SLSNLDLSVNN-LTG  137 (140)
Q Consensus       124 ~L~~l~l~~n~-~~~  137 (140)
                      +|+.|++++|+ +++
T Consensus       140 ~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCCEEEEESCTTCCC
T ss_pred             CCCEEECCCCCCCCc
Confidence            99999999985 543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.75  E-value=6.2e-10  Score=68.38  Aligned_cols=111  Identities=12%  Similarity=0.117  Sum_probs=83.2

Q ss_pred             CCceEEEccCC-eeccc----CCcccccCCCcccEEEccCCccccCC----CcCCcCCCCCCEEEeeccccccCc----c
Q 032459            2 SSLLSIRFTNN-TLFGE----LPPNFCNHLSNLESLFLKNNMFHGKI----PSTLSNCKRLRNISLSLDDFSGTI----P   68 (140)
Q Consensus         2 ~~L~~L~l~~~-~~~~~----~~~~~~~~l~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~l~l~~~~~~~~~----~   68 (140)
                      ++|++|++++| .+...    +...+ ...+.|++|++++|.+.+..    ...+...++|+.|++++|.++...    .
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            67999999999 77533    22222 55789999999999998533    334455688999999999998532    4


Q ss_pred             hhhccCCCccEEEe--cCCcccccCC----hhccCCCCCcEEecccccccc
Q 032459           69 KEIGNVTKLIRLYL--RGNQLQGEIP----EELGNLAELEMLWLQNNFLTR  113 (140)
Q Consensus        69 ~~~~~~~~L~~l~l--~~~~~~~~~~----~~~~~~~~l~~l~l~~~~~~~  113 (140)
                      ..+...+.|+.|++  ++|.+.+...    ..+...+.|+++++++|.+..
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            55666789999999  8899875432    345567899999999998753

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.65  E-value=5.1e-08  Score=63.06  Aligned_cols=80  Identities=28%  Similarity=0.385  Sum_probs=56.8

Q ss_pred             CCCCCCEEEeecccccc--CcchhhccCCCccEEEecCCcccccC-ChhccCCCCCcEEecccccccccCc-------cc
Q 032459           49 NCKRLRNISLSLDDFSG--TIPKEIGNVTKLIRLYLRGNQLQGEI-PEELGNLAELEMLWLQNNFLTRAIP-------SS  118 (140)
Q Consensus        49 ~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~~-------~~  118 (140)
                      .++.|+.|++++|.+++  ..+..+..+++|+.|++++|.+.+.. ...+..+ +|+.|++.+|++++..+       ..
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence            46788888888888875  23455667888889999888887541 1233333 88889999998876444       24


Q ss_pred             ccCCCCCCeEE
Q 032459          119 IFNLSSLSNLD  129 (140)
Q Consensus       119 ~~~~~~L~~l~  129 (140)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            56788888776

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.55  E-value=9.1e-08  Score=61.90  Aligned_cols=80  Identities=25%  Similarity=0.346  Sum_probs=61.3

Q ss_pred             cCCCcccEEEccCCcccc--CCCcCCcCCCCCCEEEeeccccccCcchhhccCC--CccEEEecCCcccccCC-------
Q 032459           24 NHLSNLESLFLKNNMFHG--KIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVT--KLIRLYLRGNQLQGEIP-------   92 (140)
Q Consensus        24 ~~l~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~L~~l~l~~~~~~~~~~-------   92 (140)
                      ..+++|+.|+|++|.+++  .++..+..+++|+.|++++|.+.+.  ..+..+.  +|+.|.+.+|.+.+..|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            457899999999999985  3445556799999999999999854  2333333  89999999999876554       


Q ss_pred             hhccCCCCCcEEe
Q 032459           93 EELGNLAELEMLW  105 (140)
Q Consensus        93 ~~~~~~~~l~~l~  105 (140)
                      ..+..+++|+.|+
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2355788898876

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.35  E-value=5e-06  Score=56.56  Aligned_cols=110  Identities=15%  Similarity=0.223  Sum_probs=54.4

Q ss_pred             cccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCC
Q 032459           20 PNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLA   99 (140)
Q Consensus        20 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~   99 (140)
                      ...|..+..|+.+.+..+... .....|..+..|+.+.+.. .+......+|..+.+|+.+.+..+ ++......|..+.
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             cceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence            344455566666666544332 3334455555566555542 233233445555555665555432 2223334455555


Q ss_pred             CCcEEecccccccccCcccccCCCCCCeEEcCCC
Q 032459          100 ELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVN  133 (140)
Q Consensus       100 ~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n  133 (140)
                      +|+.+.+..+ ++.....+|.++++|+.+++.++
T Consensus       335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            5666555433 33344455555556666555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.33  E-value=8.6e-06  Score=55.01  Aligned_cols=113  Identities=13%  Similarity=0.156  Sum_probs=70.7

Q ss_pred             CCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccC
Q 032459           18 LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGN   97 (140)
Q Consensus        18 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~   97 (140)
                      +....+..+..|+.+.+..+ ++......+..+..++.+.+..+ +......+|..+.+|+.+.+.++.+.......|..
T Consensus       231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~  308 (379)
T 4h09_A          231 LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD  308 (379)
T ss_dssp             ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred             EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC
Confidence            33444455667777777554 44344455666677777777543 33344456667777888777766665455566777


Q ss_pred             CCCCcEEecccccccccCcccccCCCCCCeEEcCCC
Q 032459           98 LAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVN  133 (140)
Q Consensus        98 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n  133 (140)
                      +.+|+.+.+..+ ++.....+|.++.+|+.+.+..+
T Consensus       309 c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          309 CVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             CCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            777888777544 44455566777777777776543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.28  E-value=2.7e-05  Score=52.98  Aligned_cols=126  Identities=13%  Similarity=0.173  Sum_probs=85.1

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ..|+.+.+....  ..+....|..+..|+.+.+. +.++......|..+.+|+.+.+..+ ++.....+|..+.+|+.+.
T Consensus       265 ~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~  340 (394)
T 4gt6_A          265 AYLASVKMPDSV--VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA  340 (394)
T ss_dssp             SSCCEEECCTTC--CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred             ccccEEeccccc--ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence            345566655442  24556667888999999996 4455455668888999999999865 5545667888899999999


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (140)
                      +..+ ++......|..+.+|+.+++.++...   ...+....+|+.+.+..+.+
T Consensus       341 ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          341 IPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             ECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             ECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            9654 55455678889999999999887643   24566778889888876644

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.13  E-value=2.5e-05  Score=52.75  Aligned_cols=117  Identities=15%  Similarity=0.121  Sum_probs=84.6

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ..|+.+.+..+ + ..+....+..+..|+.+.+..+ +.......|..+.+|+.+.+..+.++.....+|..+.+|+.+.
T Consensus       240 ~~L~~i~lp~~-v-~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~  316 (379)
T 4h09_A          240 KALDEIAIPKN-V-TSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVT  316 (379)
T ss_dssp             SSCCEEEECTT-C-CEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred             ccceEEEcCCC-c-cEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEE
Confidence            34556666554 2 3566667788889999998654 4445556788899999999998888766678888999999999


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCC
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLS  123 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~  123 (140)
                      +..+ ++......|..+.+|+.+.+..+ ++.....+|..+.
T Consensus       317 lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          317 LPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             cCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            9654 54455577888899999888654 5445555666553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.10  E-value=3.4e-05  Score=52.47  Aligned_cols=85  Identities=13%  Similarity=0.110  Sum_probs=57.3

Q ss_pred             CCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCC
Q 032459           46 TLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSL  125 (140)
Q Consensus        46 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L  125 (140)
                      .+..+.+|+.+.+..+ +......+|..+.+|+.+.+..+ +.......|..+.+|+.+.+..+ ++.....+|..+++|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            3455666777766544 44344566777778888877543 44344566777888888888765 555666778888888


Q ss_pred             CeEEcCCC
Q 032459          126 SNLDLSVN  133 (140)
Q Consensus       126 ~~l~l~~n  133 (140)
                      +.+++..+
T Consensus       369 ~~i~lp~~  376 (394)
T 4fs7_A          369 KKVELPKR  376 (394)
T ss_dssp             CEEEEEGG
T ss_pred             CEEEECCC
Confidence            88887654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.01  E-value=1.8e-06  Score=53.35  Aligned_cols=112  Identities=17%  Similarity=0.151  Sum_probs=76.8

Q ss_pred             cCCCcccEEEccCC-ccccC----CCcCCcCCCCCCEEEeeccccccCcc----hhhccCCCccEEEecCCcccccCC--
Q 032459           24 NHLSNLESLFLKNN-MFHGK----IPSTLSNCKRLRNISLSLDDFSGTIP----KEIGNVTKLIRLYLRGNQLQGEIP--   92 (140)
Q Consensus        24 ~~l~~L~~L~l~~~-~l~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~--   92 (140)
                      ..-+.|++|+|.++ ++.+.    +...+...++|+.|++++|.+.....    +.+..-..|+.|++++|.+.+...  
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            45678999999885 76632    33445567889999999998874433    344456789999999999875433  


Q ss_pred             --hhccCCCCCcEEecccc---cccc----cCcccccCCCCCCeEEcCCCcc
Q 032459           93 --EELGNLAELEMLWLQNN---FLTR----AIPSSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus        93 --~~~~~~~~l~~l~l~~~---~~~~----~~~~~~~~~~~L~~l~l~~n~~  135 (140)
                        ..+.....|++|+++++   .+.+    .+..++..-++|+.++++.|.+
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence              34556677999999754   3332    2334455667889999887754

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.97  E-value=5.5e-05  Score=51.43  Aligned_cols=106  Identities=12%  Similarity=0.097  Sum_probs=77.9

Q ss_pred             CCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccC
Q 032459           18 LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGN   97 (140)
Q Consensus        18 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~   97 (140)
                      ++...+..+.+|+.+.+..+ ++......|..+.+|+.+.+..+ ++.....+|..+.+|+.+.+..+ +.......|..
T Consensus       288 i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~  364 (394)
T 4fs7_A          288 VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG  364 (394)
T ss_dssp             ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred             eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence            34445567788888888654 55455677888999999999754 65456778889999999999765 55455678889


Q ss_pred             CCCCcEEecccccccccCcccccCCCCCCeE
Q 032459           98 LAELEMLWLQNNFLTRAIPSSIFNLSSLSNL  128 (140)
Q Consensus        98 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l  128 (140)
                      +.+|+.+++..+- + .....+..+++|+.+
T Consensus       365 C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          365 CINLKKVELPKRL-E-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred             CCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence            9999999997652 2 234567777777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.55  E-value=0.00025  Score=40.85  Aligned_cols=55  Identities=22%  Similarity=0.312  Sum_probs=31.2

Q ss_pred             EEccCCeec-ccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccc
Q 032459            7 IRFTNNTLF-GELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS   64 (140)
Q Consensus         7 L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~   64 (140)
                      ++.+++.++ ..+|..+   .+++++|+|++|.|+...+..|..+++|+.|++.+|.+.
T Consensus        13 v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           13 VDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            344444442 2455443   335667777777776444445566666777777666553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.47  E-value=7.3e-05  Score=46.19  Aligned_cols=87  Identities=15%  Similarity=0.200  Sum_probs=65.2

Q ss_pred             CcCCCCCCEEEeecc-ccccC----cchhhccCCCccEEEecCCcccccCC----hhccCCCCCcEEecccccccccCc-
Q 032459           47 LSNCKRLRNISLSLD-DFSGT----IPKEIGNVTKLIRLYLRGNQLQGEIP----EELGNLAELEMLWLQNNFLTRAIP-  116 (140)
Q Consensus        47 ~~~~~~L~~l~l~~~-~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~----~~~~~~~~l~~l~l~~~~~~~~~~-  116 (140)
                      +...+.|+.|+++++ .+...    ..+++..-+.|+.|++++|.+.+...    ..+...+.|++|+++.|.+.+... 
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            345688999999985 77632    34556667899999999999985433    445567999999999999986433 


Q ss_pred             ---ccccCCCCCCeEEcCCC
Q 032459          117 ---SSIFNLSSLSNLDLSVN  133 (140)
Q Consensus       117 ---~~~~~~~~L~~l~l~~n  133 (140)
                         .++..-++|++|++++|
T Consensus       117 ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCC
Confidence               34455678999999864

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.28  E-value=0.00091  Score=38.46  Aligned_cols=57  Identities=21%  Similarity=0.258  Sum_probs=41.5

Q ss_pred             CEEEeeccccc-cCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEeccccccc
Q 032459           54 RNISLSLDDFS-GTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLT  112 (140)
Q Consensus        54 ~~l~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~  112 (140)
                      ..++.+++.++ ...|..+.  .+++.|++++|+++...+..+..+++|+++++.+|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36777777765 13343322  36889999999998666677788889999999999875

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=84.48  E-value=3.3  Score=22.31  Aligned_cols=44  Identities=11%  Similarity=0.189  Sum_probs=28.4

Q ss_pred             cCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecc
Q 032459           17 ELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD   61 (140)
Q Consensus        17 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~   61 (140)
                      .+....|..+..|+.+.+..+ ++......|..+.+|+.+.+...
T Consensus        10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A           10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            556666677777777777654 33345556667777777776554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	140
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.8 bits (112), Expect = 6e-08
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 49  NCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQN 108
             K L  + L  +   GT+P+ +  +  L  L +  N L GEIP + GNL   ++    N
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYAN 300

Query: 109 NFLTRAIP 116
           N      P
Sbjct: 301 NKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.1 bits (110), Expect = 1e-07
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 81  YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135
            LR N++ G +P+ L  L  L  L +  N L   IP    NL        + N  
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.5 bits (106), Expect = 4e-07
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 21  NFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80
                  NL  L L+NN  +G +P  L+  K L ++++S ++  G IP + GN+ +    
Sbjct: 238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVS 296

Query: 81  YLRGNQLQGEIP 92
               N+     P
Sbjct: 297 AYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.7 bits (91), Expect = 3e-05
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 105 WLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSL 139
            L+NN +   +P  +  L  L +L++S NNL G +
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 6e-05
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS 59
             +L  +   NN ++G LP      L  L SL +  N   G+IP    N +R    + +
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYA 299

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 1e-07
 Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 29/157 (18%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +++L  +    N L           L+NL  L L NN      P  LS   +L  + L  
Sbjct: 218 LTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 272

Query: 61  DDFSGTIP--------------------KEIGNVTKLIRLYLRGNQLQGEIPEELGNLAE 100
           +  S   P                      I N+  L  L L  N +    P  + +L +
Sbjct: 273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTK 330

Query: 101 LEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137
           L+ L+  NN ++    SS+ NL++++ L    N ++ 
Sbjct: 331 LQRLFFANNKVS--DVSSLANLTNINWLSAGHNQISD 365

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 2e-07
 Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 11/133 (8%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           ++ L  ++   N +    P      L+NLE    +             N K L  ++L  
Sbjct: 262 LTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS-----NLKNLTYLTLYF 316

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           ++ S   P  + ++TKL RL+   N++       L NL  +  L   +N ++   P  + 
Sbjct: 317 NNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LA 370

Query: 121 NLSSLSNLDLSVN 133
           NL+ ++ L L+  
Sbjct: 371 NLTRITQLGLNDQ 383

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-06
 Identities = 25/121 (20%), Positives = 40/121 (33%)

Query: 14  LFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGN 73
               + P   + L  L +L L         P        L+ + L  +           +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 74  VTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVN 133
           +  L  L+L GN++          L  L+ L L  N +    P +  +L  L  L L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 134 N 134
           N
Sbjct: 212 N 212

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 3e-06
 Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 5/137 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           + +L  +    N +   +P      L +L+ L L  N      P    +  RL  + L  
Sbjct: 152 LGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
           ++ S    + +  +  L  L L  N    +        A L+     ++ +  ++P    
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQ--- 266

Query: 121 NLSSLSNLDLSVNNLTG 137
            L+      L+ N+L G
Sbjct: 267 RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 1e-05
 Identities = 30/134 (22%), Positives = 51/134 (38%)

Query: 5   LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS 64
           L     +     EL P     L+ L+ L+L++N        T  +   L ++ L  +  S
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 65  GTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSS 124
               +    +  L RL L  N++    P    +L  L  L+L  N L+     ++  L +
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226

Query: 125 LSNLDLSVNNLTGS 138
           L  L L+ N     
Sbjct: 227 LQYLRLNDNPWVCD 240

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 1e-04
 Identities = 29/137 (21%), Positives = 44/137 (32%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
             +L  +   +N L       F       +     N       P+T     RL  + L  
Sbjct: 55  CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
                  P     +  L  LYL+ N LQ    +   +L  L  L+L  N ++     +  
Sbjct: 115 CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174

Query: 121 NLSSLSNLDLSVNNLTG 137
            L SL  L L  N +  
Sbjct: 175 GLHSLDRLLLHQNRVAH 191

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 4e-06
 Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 1/126 (0%)

Query: 11  NNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKE 70
            N    E+      +L NL +L L NN      P   +   +L  + LS +       K 
Sbjct: 39  QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 98

Query: 71  IGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDL 130
              + +L        +++  +   L  +  +E L       +     +   +  LS + +
Sbjct: 99  PKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQGMKKLSYIRI 157

Query: 131 SVNNLT 136
           +  N+T
Sbjct: 158 ADTNIT 163

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 1e-05
 Identities = 32/114 (28%), Positives = 49/114 (42%), Gaps = 3/114 (2%)

Query: 27  SNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQ 86
            +   L L+NN           N K L  + L  +  S   P     + KL RLYL  NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 87  LQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC 140
           L+ E+PE++     L+ L +  N +T+   S    L+ +  ++L  N L  S  
Sbjct: 91  LK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.0 bits (92), Expect = 3e-05
 Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 10/138 (7%)

Query: 5   LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFS 64
           LS     +T    +P        +L  L L  N       ++L     L  + LS +  S
Sbjct: 152 LSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 65  GTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTR------AIPSS 118
                 + N   L  L+L  N+L  ++P  L +   +++++L NN ++         P  
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 267

Query: 119 IFNLSSLSNLDLSVNNLT 136
               +S S + L  N + 
Sbjct: 268 NTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 34.2 bits (77), Expect = 0.003
 Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 5/140 (3%)

Query: 1   MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSL 60
           +  L  +  + N L  ELP      L  L     +       + + L+    +   +  L
Sbjct: 78  LVKLERLYLSKNQL-KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 136

Query: 61  DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIF 120
              SG        + KL  + +    +   IP+  G    L  L L  N +T+   +S+ 
Sbjct: 137 K-SSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLK 192

Query: 121 NLSSLSNLDLSVNNLTGSLC 140
            L++L+ L LS N+++    
Sbjct: 193 GLNNLAKLGLSFNSISAVDN 212

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 7e-05
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 9/90 (10%)

Query: 20  PNFCNHLSNLESLFLKNNMFHGK----IPSTLSNCKRLRNISLSLDDFSGTIPKEIG--- 72
                  S L  L+L +          + +TL     LR + LS +        ++    
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 73  --NVTKLIRLYLRGNQLQGEIPEELGNLAE 100
                 L +L L       E+ + L  L +
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 2e-04
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 77  LIRLYLRGNQLQGE-IPEELGNLAELEMLWLQNNFLT----RAIPSSIFNLSSLSNLDLS 131
           +  L ++  +L      E L  L + +++ L +  LT    + I S++    +L+ L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 132 VNNLTGS 138
            N L   
Sbjct: 64  SNELGDV 70

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (77), Expect = 0.002
 Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 28  NLESLFLKNNMF-HGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNV----TKLIRLYL 82
           +++SL ++       +    L   ++ + + L     +    K+I +       L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 83  RGNQLQGEIPEELGNLAELEMLWLQNNFL 111
           R N+L       +    +     +Q   L
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (75), Expect = 0.004
 Identities = 14/77 (18%), Positives = 21/77 (27%), Gaps = 9/77 (11%)

Query: 73  NVTKLIRLYLRGNQLQGE----IPEELGNLAELEMLWLQNNFLTRAIPSSIF-----NLS 123
             + L  L+L    +       +   L     L  L L NN L  A    +         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 124 SLSNLDLSVNNLTGSLC 140
            L  L L     +  + 
Sbjct: 427 LLEQLVLYDIYWSEEME 443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 2e-04
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 70  EIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLD 129
           E+  V   + +      L   +P +L    +  +L L  N L     +++   + L+ L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 130 LS 131
           L 
Sbjct: 62  LD 63

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 4e-04
 Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 1/51 (1%)

Query: 85  NQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL 135
           N L       L  L  L+ L LQ N L   IP   F    L    L  N  
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (78), Expect = 0.002
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 1/95 (1%)

Query: 15  FGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNV 74
              LP      L  L+ L+LK N      P  L+   +L  +SL+ ++ +      +  +
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171

Query: 75  TKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNN 109
             L  L L+ N L   IP+       L   +L  N
Sbjct: 172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.3 bits (82), Expect = 6e-04
 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 9/83 (10%)

Query: 21  NFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL 80
           + C+   +LE L + NN    ++P+       L  +  S +  +  +P+   N   L +L
Sbjct: 278 SLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELPQN---LKQL 329

Query: 81  YLRGNQLQGEIPEELGNLAELEM 103
           ++  N L+ E P+   ++ +L M
Sbjct: 330 HVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 35.2 bits (79), Expect = 0.001
 Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 8/103 (7%)

Query: 35  KNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEE 94
           ++  F     +  S    L      L+  S  I         L  L +  N+L  E+P  
Sbjct: 244 QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL 302

Query: 95  LGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG 137
              L   E L    N L   +P       +L  L +  N L  
Sbjct: 303 PPRL---ERLIASFNHLAE-VPEL---PQNLKQLHVEYNPLRE 338

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (79), Expect = 0.001
 Identities = 13/55 (23%), Positives = 20/55 (36%)

Query: 5   LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLS 59
             +  ++N    ELP +  +  S    L +     H      L N K+LR  S  
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 33.5 bits (75), Expect = 0.004
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 71  IGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDL 130
           + N++KL  L    N++    P  L +L  L  + L+NN ++   P  + N S+L  + L
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 131 S 131
           +
Sbjct: 225 T 225

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	140
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.82
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.8
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.79
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.79
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.78
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.77
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.77
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.73
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.71
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.71
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.68
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.66
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.63
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.57
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.54
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.53
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.52
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.5
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.49
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.48
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.45
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.43
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.42
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.4
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.37
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.32
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.0
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.99
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.92
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.91
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.89
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.89
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.82
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.46
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.43
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.38
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.17
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.86
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.58

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.82  E-value=1e-19  Score=118.72  Aligned_cols=46  Identities=33%  Similarity=0.440  Sum_probs=37.7

Q ss_pred             ccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccceecC
Q 032459           95 LGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGSLC  140 (140)
Q Consensus        95 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  140 (140)
                      +..+++++.+++++|.+++.+|..++.+++|++|++++|.++|.+|
T Consensus       240 ~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             cccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC
Confidence            3445677788888888888888888888899999999998888876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=5.1e-19  Score=108.21  Aligned_cols=129  Identities=21%  Similarity=0.313  Sum_probs=109.5

Q ss_pred             eEEEccCCeecccCCcccccCCCcccEEEccCCcccc-CCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEec
Q 032459            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG-KIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR   83 (140)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   83 (140)
                      +.++.+++.++ ++|..+   .+.+++|++++|.|+. ..+..|..+++|+.|++++|.+....+..+..++.|+.|+++
T Consensus        11 ~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            45777888774 788876   3689999999999975 345567789999999999999987777888889999999999


Q ss_pred             CCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           84 GNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      +|++....+..|..+++|++|++++|.++...++.|..+++|+++++++|++..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            999987777888899999999999999988888888899999999999998754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9.3e-19  Score=112.82  Aligned_cols=136  Identities=23%  Similarity=0.308  Sum_probs=118.4

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++|++|++++|.+. .++...+...++|+.+++.+|.++...+..+..+++++.|++.+|.++...+..+..++.|+.+
T Consensus       104 l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l  182 (284)
T d1ozna_         104 LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL  182 (284)
T ss_dssp             CTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             cccCCEEecCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchh
Confidence            478999999999874 5555555778899999999999986666778888999999999999987777888899999999


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      .+++|++.+..|..+..+++++++++++|.++...+..+..+++|+++++++|++..
T Consensus       183 ~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             hhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            999999988888889999999999999999988777888999999999999998764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.79  E-value=1e-18  Score=113.98  Aligned_cols=137  Identities=25%  Similarity=0.442  Sum_probs=121.1

Q ss_pred             CceEEEccCCeecc--cCCcccccCCCcccEEEccC-CccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccE
Q 032459            3 SLLSIRFTNNTLFG--ELPPNFCNHLSNLESLFLKN-NMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIR   79 (140)
Q Consensus         3 ~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~   79 (140)
                      +++.|+++++.+.+  .+|.++ ..++.|++|++++ |.+.+.+|..+..+++|++|++++|.+.+..+..+..+..|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHH-hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            58889999998875  477777 6799999999987 7899899999999999999999999998777888888999999


Q ss_pred             EEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCC-CeEEcCCCccceecC
Q 032459           80 LYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSL-SNLDLSVNNLTGSLC  140 (140)
Q Consensus        80 l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L-~~l~l~~n~~~~~~~  140 (140)
                      +++++|.+.+..|..+..++.++++++++|.+++..|+.+..+..+ +.+++++|.+++..|
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~  191 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP  191 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccc
Confidence            9999999988888999999999999999999988888888887765 888999998877653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.4e-18  Score=108.75  Aligned_cols=58  Identities=14%  Similarity=0.173  Sum_probs=26.3

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecccc
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDF   63 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~   63 (140)
                      ++++|++++|.+. .++...+..+++|++|++++|.++. ++ .+..+++|+.|++++|++
T Consensus        32 ~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l   89 (266)
T d1p9ag_          32 DTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQL   89 (266)
T ss_dssp             TCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCC
T ss_pred             CCCEEECcCCcCC-CcCHHHhhccccccccccccccccc-cc-cccccccccccccccccc
Confidence            3555555555543 3443333445555555555555441 11 123344444444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=3e-19  Score=109.23  Aligned_cols=112  Identities=21%  Similarity=0.242  Sum_probs=102.1

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      +++++|++++|.+.+.++...|..+++|++|++++|.+....+..+..++.|+.|++++|+++...+..|..+++|+.|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            47899999999997667777778999999999999999988888999999999999999999977778899999999999


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccc
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTR  113 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~  113 (140)
                      +++|+++...+..|..+++++++++++|++..
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cCCccccccCHHHhcCCccccccccccccccc
Confidence            99999997778889999999999999998863

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.2e-17  Score=106.73  Aligned_cols=130  Identities=25%  Similarity=0.281  Sum_probs=75.5

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecccccc---------------
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSG---------------   65 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~---------------   65 (140)
                      +++|++|++++|.+. .++..  ..+++|++|++++|.++ ..+..+..++.|+.++++++.+..               
T Consensus        54 l~~L~~L~L~~N~l~-~l~~~--~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L  129 (266)
T d1p9ag_          54 YTRLTQLNLDRAELT-KLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL  129 (266)
T ss_dssp             CTTCCEEECTTSCCC-EEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred             ccccccccccccccc-ccccc--ccccccccccccccccc-ccccccccccccccccccccccceeeccccccccccccc
Confidence            356667777776653 34322  34666666666666665 334444555555555555555443               


Q ss_pred             ---------CcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcc
Q 032459           66 ---------TIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus        66 ---------~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (140)
                               ..+..+..++.++.+++++|++++..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++
T Consensus       130 ~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             cccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence                     33334444556666666666666554555666666666666666665 4555566666666666666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.9e-17  Score=98.58  Aligned_cols=125  Identities=15%  Similarity=0.173  Sum_probs=100.6

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      .++++|++++|.+. .++. ++..+++|+.|++++|.++ .++ .+..+++|+.|++++|.++...+..+..+++++.++
T Consensus        18 ~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          18 VRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccce
Confidence            46899999999985 6664 4467899999999999998 343 478899999999999999865555667899999999


Q ss_pred             ecCCcccccC-ChhccCCCCCcEEecccccccccC---cccccCCCCCCeEEc
Q 032459           82 LRGNQLQGEI-PEELGNLAELEMLWLQNNFLTRAI---PSSIFNLSSLSNLDL  130 (140)
Q Consensus        82 l~~~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~---~~~~~~~~~L~~l~l  130 (140)
                      +++|++.... ...+..+++|+++++.+|+++...   +..+..+|+|+.||-
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            9999987432 256778899999999999997542   135678899998874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.1e-16  Score=102.99  Aligned_cols=121  Identities=21%  Similarity=0.303  Sum_probs=101.7

Q ss_pred             CCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccC
Q 032459           18 LPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGN   97 (140)
Q Consensus        18 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~   97 (140)
                      ++...+..+++|++|++.+|.+....+..+....+|+.+++.+|.++...+..+..++.++.+++++|.+....+..+..
T Consensus        96 l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~  175 (284)
T d1ozna_          96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG  175 (284)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             ccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcc
Confidence            33444567788999999999887656667777888999999999998666677888889999999999988777788888


Q ss_pred             CCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459           98 LAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus        98 ~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  138 (140)
                      +++++.+++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus       176 l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~  216 (284)
T d1ozna_         176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL  216 (284)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             ccccchhhhhhccccccChhHhhhhhhcccccccccccccc
Confidence            99999999999999888888999999999999999988654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=1.5e-16  Score=90.69  Aligned_cols=118  Identities=23%  Similarity=0.263  Sum_probs=94.9

Q ss_pred             eEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecC
Q 032459            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRG   84 (140)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~   84 (140)
                      ++|++++|.++ .++. + ..++.|++|++++|.++ .+|..+..+++|+.|++++|.++. .+ .+..+++|+.+++++
T Consensus         1 R~L~Ls~n~l~-~l~~-l-~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH-L-EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCCC-G-GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCcc-c-ccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCC
Confidence            57899999985 5553 4 77999999999999998 678788899999999999999984 33 578899999999999


Q ss_pred             CcccccC-ChhccCCCCCcEEecccccccccC---cccccCCCCCCeE
Q 032459           85 NQLQGEI-PEELGNLAELEMLWLQNNFLTRAI---PSSIFNLSSLSNL  128 (140)
Q Consensus        85 ~~~~~~~-~~~~~~~~~l~~l~l~~~~~~~~~---~~~~~~~~~L~~l  128 (140)
                      |++.... ...+..+++++++++++|++++..   ......+|+++.+
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9998543 356778899999999999987432   2334457777765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=5.2e-16  Score=88.35  Aligned_cols=103  Identities=22%  Similarity=0.286  Sum_probs=89.0

Q ss_pred             cEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecccc
Q 032459           30 ESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNN  109 (140)
Q Consensus        30 ~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~  109 (140)
                      +.|++++|.++ .++ .+..++.|+.|++++|.++ ..|..+..+++|+.+++++|.+...  +.+..+++|+++++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc--CccccccccCeEECCCC
Confidence            57999999998 455 4789999999999999998 5677889999999999999999843  35888999999999999


Q ss_pred             cccccCc-ccccCCCCCCeEEcCCCccce
Q 032459          110 FLTRAIP-SSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus       110 ~~~~~~~-~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      .+++... ..+..+++|+.+++++|++++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            9986533 568889999999999999864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.6e-16  Score=94.53  Aligned_cols=111  Identities=19%  Similarity=0.143  Sum_probs=93.4

Q ss_pred             cCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcE
Q 032459           24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM  103 (140)
Q Consensus        24 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~  103 (140)
                      ....++++|++++|+|+ .++..+..+++|+.|++++|.++. . +.+..+++|+.+++++|++....+..+..++++++
T Consensus        15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            45778999999999998 556666778999999999999984 3 45788999999999999998655556678899999


Q ss_pred             EecccccccccCc-ccccCCCCCCeEEcCCCccce
Q 032459          104 LWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus       104 l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      +++++|.++.... ..+..+++|+.+++++|++++
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             ceeccccccccccccccccccccchhhcCCCcccc
Confidence            9999999975432 567889999999999998864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=1.6e-15  Score=92.87  Aligned_cols=125  Identities=29%  Similarity=0.460  Sum_probs=74.0

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++|++|++++|.+. .+++  +..+++|++|++++|.+. .++ .+..++.|+.+++.++....  ...+..+++|+.++
T Consensus        62 ~nL~~L~Ls~N~l~-~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~  134 (199)
T d2omxa2          62 NNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLE  134 (199)
T ss_dssp             TTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEE
T ss_pred             CCcCcCcccccccc-Cccc--ccCCcccccccccccccc-ccc-cccccccccccccccccccc--ccccchhhhhHHhh
Confidence            44555555555443 2222  244555555555555444 122 24455555555555554432  23355667777777


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      +++|.+..  .+.+..+++++.+++.+|.+++.  ..+..+++|+.|++++|++++
T Consensus       135 l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         135 LSSNTISD--ISALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CCSSCCCC--CGGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred             hhhhhhcc--cccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCCC
Confidence            77777652  23466778888888888877643  347788899999999998765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.66  E-value=1.5e-15  Score=98.38  Aligned_cols=61  Identities=23%  Similarity=0.324  Sum_probs=45.1

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeecccc
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDF   63 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~   63 (140)
                      +++++|++++|.+. .+++..+..+++|++|++.+|.+....|..|..++.|+.+++.+|++
T Consensus        31 ~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l   91 (305)
T d1xkua_          31 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL   91 (305)
T ss_dssp             TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCcc
Confidence            45778888888774 66665557778888888888887765666777777788887776655

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.63  E-value=4.2e-15  Score=96.29  Aligned_cols=131  Identities=22%  Similarity=0.326  Sum_probs=108.2

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++|+.+++.+|.+. .++..+   +++++.|++.+|..+...+..+..++.++.|++++|.+++..+..+..+++|+.|
T Consensus       149 l~~L~~l~l~~n~l~-~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L  224 (305)
T d1xkua_         149 MKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL  224 (305)
T ss_dssp             CTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred             ccccCccccccCCcc-ccCccc---CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceee
Confidence            367888999998874 566554   5789999999999887788888889999999999999987777888889999999


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCccc------ccCCCCCCeEEcCCCccc
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSS------IFNLSSLSNLDLSVNNLT  136 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~------~~~~~~L~~l~l~~n~~~  136 (140)
                      ++++|+++ ..|..+..+++|+++++++|+++......      ....++|+.+++++|++.
T Consensus       225 ~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         225 HLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             ECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             eccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            99999988 55778888999999999999987543333      345678999999999874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=5.1e-15  Score=91.37  Aligned_cols=125  Identities=27%  Similarity=0.442  Sum_probs=69.1

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      ++|++|++++|.+. .++.  +..+++|+.|++++|.+++ ++ .+..+++|+.+++.++.+..  ...+..++.++.+.
T Consensus        68 ~~L~~L~L~~n~i~-~l~~--~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~  140 (210)
T d1h6ta2          68 PNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLY  140 (210)
T ss_dssp             TTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEE
T ss_pred             CCCCEEeCCCcccc-Cccc--cccCccccccccccccccc-cc-cccccccccccccccccccc--cccccccccccccc
Confidence            44555555555443 2221  1345555555555555542 22 24445555555555554431  22344445555555


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      +.+|.+++  +..+..+++|+++++++|.+++.  ..+..+++|+.|++++|.+++
T Consensus       141 ~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i--~~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         141 LGNNKITD--ITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             CCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred             cccccccc--ccccccccccccccccccccccc--ccccCCCCCCEEECCCCCCCC
Confidence            55555432  23445667888888888887643  237778888888888887753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=4.8e-14  Score=86.23  Aligned_cols=125  Identities=26%  Similarity=0.350  Sum_probs=102.3

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      +++++|+++++.+. +++. + +.+++|++|++++|++++. + .+..+++|+.|++++|.+.. . ..+..++.|+.++
T Consensus        40 ~~l~~L~l~~~~i~-~l~~-l-~~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~~-~-~~l~~l~~L~~L~  112 (199)
T d2omxa2          40 DQVTTLQADRLGIK-SIDG-V-EYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIAD-I-TPLANLTNLTGLT  112 (199)
T ss_dssp             TTCCEEECTTSCCC-CCTT-G-GGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEE
T ss_pred             cCCCEEECCCCCCC-Cccc-c-ccCCCcCcCccccccccCc-c-cccCCccccccccccccccc-c-ccccccccccccc
Confidence            57899999999885 4432 3 6799999999999999843 3 37889999999999998863 3 3477899999999


Q ss_pred             ecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           82 LRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      ++++....  ...+..+++++.+++++|.+..  ...+..+++++++++.+|.+++
T Consensus       113 l~~~~~~~--~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~  164 (199)
T d2omxa2         113 LFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTD  164 (199)
T ss_dssp             CCSSCCCC--CGGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCC
T ss_pred             cccccccc--ccccchhhhhHHhhhhhhhhcc--cccccccccccccccccccccC
Confidence            99988763  3456788999999999999863  3457889999999999998765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=1.1e-13  Score=86.10  Aligned_cols=63  Identities=24%  Similarity=0.340  Sum_probs=44.8

Q ss_pred             hccCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           71 IGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        71 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      +..+++++.+++.+|.+.+.  ..+..+++|+++++++|.+++.  ..+..+++|++|++++|.+++
T Consensus       147 ~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l--~~l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECTTSCCCB
T ss_pred             hccccccccccccccccccc--hhhcccccceecccCCCccCCC--hhhcCCCCCCEEECcCCcCCC
Confidence            34456677777777766532  3366778888888888888643  337788889999998888764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=1.1e-13  Score=85.29  Aligned_cols=121  Identities=24%  Similarity=0.316  Sum_probs=99.7

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      |++|+.|++++|.+. .++.  +..+++|+.+++.+|.+. . ...+..++.++.+++.++.++.  +..+..+++|+.+
T Consensus        89 l~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~l~~~~~~-~-~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l  161 (210)
T d1h6ta2          89 LKNLGWLFLDENKVK-DLSS--LKDLKKLKSLSLEHNGIS-D-INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTL  161 (210)
T ss_dssp             CTTCCEEECCSSCCC-CGGG--GTTCTTCCEEECTTSCCC-C-CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEE
T ss_pred             Ccccccccccccccc-cccc--cccccccccccccccccc-c-cccccccccccccccccccccc--ccccccccccccc
Confidence            578999999999885 5553  367999999999999886 2 3457788999999999999863  4456788999999


Q ss_pred             EecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCC
Q 032459           81 YLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSV  132 (140)
Q Consensus        81 ~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~  132 (140)
                      ++++|.+.+.  ..+..+++|+++++++|.+++. + .+..+++|+.|++++
T Consensus       162 ~l~~n~l~~i--~~l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         162 SLEDNQISDI--VPLAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEE
T ss_pred             cccccccccc--ccccCCCCCCEEECCCCCCCCC-h-hhcCCCCCCEEEccC
Confidence            9999998743  3477899999999999999743 3 588999999999864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.52  E-value=1.4e-16  Score=97.64  Aligned_cols=123  Identities=22%  Similarity=0.322  Sum_probs=77.6

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEE
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l   80 (140)
                      |++|++|++++|.+. .++.  +..+++|+.|++++|.++ .++.....++.|+.|++++|.++. . +.+..+++|+.+
T Consensus        47 L~~L~~L~Ls~n~I~-~i~~--l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~~L  120 (198)
T d1m9la_          47 LKACKHLALSTNNIE-KISS--LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVNLRVL  120 (198)
T ss_dssp             TTTCCEEECSEEEES-CCCC--HHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHHSSEE
T ss_pred             ccccceeECcccCCC-Cccc--ccCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccccccccccc
Confidence            456777777777764 4442  356777777777777776 444433445567777777777763 2 345566777777


Q ss_pred             EecCCcccccCC-hhccCCCCCcEEecccccccccCcc----------cccCCCCCCeEE
Q 032459           81 YLRGNQLQGEIP-EELGNLAELEMLWLQNNFLTRAIPS----------SIFNLSSLSNLD  129 (140)
Q Consensus        81 ~l~~~~~~~~~~-~~~~~~~~l~~l~l~~~~~~~~~~~----------~~~~~~~L~~l~  129 (140)
                      ++++|++..... ..+..+++|+.+++++|+++...+.          .+..+|+|+.||
T Consensus       121 ~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            777777763321 3466677777777777776543222          145567777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.2e-13  Score=80.27  Aligned_cols=105  Identities=21%  Similarity=0.211  Sum_probs=72.3

Q ss_pred             eEEEccCCeecccCCcccccCCCcccEEEccCC-ccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEec
Q 032459            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNN-MFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLR   83 (140)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~   83 (140)
                      ..++..++.+. +.|..+ ..++++++|++.++ .++...+..|..+++|+.|++++|+++...+.+|..+++++.|+++
T Consensus        11 ~~l~c~~~~~~-~~p~~l-~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SCEECCSSCCC-TTTTTS-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CeEEecCCCCc-cCcccc-cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            44566665553 455554 56778888888655 4765555667778888888888888876666777788888888888


Q ss_pred             CCcccccCChhccCCCCCcEEeccccccc
Q 032459           84 GNQLQGEIPEELGNLAELEMLWLQNNFLT  112 (140)
Q Consensus        84 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~  112 (140)
                      +|+++...+..+. ..+++.+++++|++.
T Consensus        89 ~N~l~~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALESLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCSCCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             CCCCcccChhhhc-cccccccccCCCccc
Confidence            8888733333343 346888888888764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=3.4e-13  Score=89.34  Aligned_cols=128  Identities=25%  Similarity=0.337  Sum_probs=76.8

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccC---------------
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGT---------------   66 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~---------------   66 (140)
                      ++|++|++.+|.+. .++ .+ ..+++|+.+++.+|.+++..  .+..+++|+.++++++.+...               
T Consensus       219 ~~L~~L~l~~n~l~-~~~-~l-~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~  293 (384)
T d2omza2         219 TNLDELSLNGNQLK-DIG-TL-ASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELN  293 (384)
T ss_dssp             TTCCEEECCSSCCC-CCG-GG-GGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             CCCCEEECCCCCCC-Ccc-hh-hcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCCcccccccccccccc
Confidence            45666777776653 222 22 45666666666666665322  244555666666655554321               


Q ss_pred             -----cchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCcccee
Q 032459           67 -----IPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTGS  138 (140)
Q Consensus        67 -----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  138 (140)
                           ....+..++.++.+++++|++.+..  .+..+++|+++++++|.+++ + ..+..+++|++|++++|.+++-
T Consensus       294 ~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l-~~l~~l~~L~~L~l~~N~l~~l  366 (384)
T d2omza2         294 ENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-V-SSLANLTNINWLSAGHNQISDL  366 (384)
T ss_dssp             SSCCSCCGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCCEEECCSSCCCBC
T ss_pred             ccccccccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-C-hhHcCCCCCCEEECCCCcCCCC
Confidence                 1123445566777777777776432  35667778888888877763 2 3467777888888887777654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.48  E-value=4e-13  Score=88.98  Aligned_cols=124  Identities=27%  Similarity=0.421  Sum_probs=92.3

Q ss_pred             CCCceEEEccCCeecccCCcccccCCCcccEEEccCCccccC--------------------CCcCCcCCCCCCEEEeec
Q 032459            1 MSSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGK--------------------IPSTLSNCKRLRNISLSL   60 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~--------------------~~~~~~~~~~L~~l~l~~   60 (140)
                      +++|+.+++.+|.+. .++.  +..+++|++++++++.+++.                    ....+..+++++.+++++
T Consensus       240 l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~  316 (384)
T d2omza2         240 LTNLTDLDLANNQIS-NLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF  316 (384)
T ss_dssp             CTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCS
T ss_pred             ccccchhccccCccC-CCCc--ccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCC
Confidence            356777777777664 2322  24566777777766655421                    112345678899999999


Q ss_pred             cccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCC
Q 032459           61 DDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVN  133 (140)
Q Consensus        61 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n  133 (140)
                      |.+++. + .+..+++|+.|++++|++++  ...+..+++|+++++++|.+++..|  +..+++|++|++++|
T Consensus       317 n~l~~l-~-~l~~l~~L~~L~L~~n~l~~--l~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         317 NNISDI-S-PVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SCCSCC-G-GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCC-c-ccccCCCCCEEECCCCCCCC--ChhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            998753 2 47789999999999999874  3468889999999999999986543  888999999999987

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.8e-13  Score=78.76  Aligned_cols=106  Identities=18%  Similarity=0.103  Sum_probs=79.8

Q ss_pred             cccEEEccCCccccCCCcCCcCCCCCCEEEeecc-ccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEec
Q 032459           28 NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLD-DFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWL  106 (140)
Q Consensus        28 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l  106 (140)
                      ..+.++..++++. ..|..+..+++++.|++.++ .++...+..|..+++|+.|++++|+++...+..|..+++++++++
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3455677777776 56777777888888888765 477555677888888888888888888776777888888888888


Q ss_pred             ccccccccCcccccCCCCCCeEEcCCCcc
Q 032459          107 QNNFLTRAIPSSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~  135 (140)
                      ++|.++.. +..+....+|+.|++++|++
T Consensus        88 s~N~l~~l-~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          88 SFNALESL-SWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CSSCCSCC-CSTTTCSCCCCEEECCSSCC
T ss_pred             cCCCCccc-ChhhhccccccccccCCCcc
Confidence            88888744 43334444788888888876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=8e-13  Score=82.73  Aligned_cols=82  Identities=18%  Similarity=0.276  Sum_probs=43.7

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCC-CcCCcCCCCCCEEEeec-cccccCcchhhccCCCccEE
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKI-PSTLSNCKRLRNISLSL-DDFSGTIPKEIGNVTKLIRL   80 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~l   80 (140)
                      +++.|++++|.+. .++...|.++++|++|++++|.+...+ +..|..++.++.+.+.. +.+....+..+..+++|+.+
T Consensus        30 ~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          30 NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             CCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            5677777777763 566655567777777777777654322 22344444444444432 23332333334444444444


Q ss_pred             EecCC
Q 032459           81 YLRGN   85 (140)
Q Consensus        81 ~l~~~   85 (140)
                      ++.++
T Consensus       109 ~l~~~  113 (242)
T d1xwdc1         109 LISNT  113 (242)
T ss_dssp             EEESC
T ss_pred             ccchh
Confidence            44444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=1.9e-12  Score=80.38  Aligned_cols=127  Identities=20%  Similarity=0.274  Sum_probs=92.0

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEE
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLY   81 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~   81 (140)
                      .+|++|++.+|.+. +++ .+ ..+++|++|++++|.+++..  .+..+++++.+++.+|.++.  ...+..++.++.+.
T Consensus        41 ~~L~~L~l~~~~i~-~l~-~l-~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~--i~~l~~l~~L~~l~  113 (227)
T d1h6ua2          41 DGITTLSAFGTGVT-TIE-GV-QYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLD  113 (227)
T ss_dssp             HTCCEEECTTSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC--CGGGTTCTTCCEEE
T ss_pred             CCcCEEECCCCCCC-cch-hH-hcCCCCcEeecCCceeeccc--cccccccccccccccccccc--cccccccccccccc
Confidence            46888899998875 553 33 67899999999999887433  36778888888888887763  23466777788888


Q ss_pred             ecCCccccc--------------------CChhccCCCCCcEEecccccccccCcccccCCCCCCeEEcCCCccce
Q 032459           82 LRGNQLQGE--------------------IPEELGNLAELEMLWLQNNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        82 l~~~~~~~~--------------------~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      ++++...+.                    ....+...++++.+++.+|.+++.  ..+..+++|++|++++|.+++
T Consensus       114 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred             cccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccc--hhhcccccceecccCCCccCC
Confidence            777654321                    112344567788999988887633  347889999999999998764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.40  E-value=3.4e-15  Score=91.37  Aligned_cols=109  Identities=27%  Similarity=0.301  Sum_probs=90.2

Q ss_pred             cCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcE
Q 032459           24 NHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEM  103 (140)
Q Consensus        24 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~  103 (140)
                      ..+++|++|++++|.|+ .++ .+..+++|+.|++++|.++ ..+.....++.|+.+++++|.+...  +.+..+++|++
T Consensus        45 ~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~  119 (198)
T d1m9la_          45 STLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLRV  119 (198)
T ss_dssp             HHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHSSE
T ss_pred             hcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccccccccccc
Confidence            67899999999999998 444 5788999999999999998 4555555567899999999998743  45677899999


Q ss_pred             EecccccccccCc-ccccCCCCCCeEEcCCCccce
Q 032459          104 LWLQNNFLTRAIP-SSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus       104 l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      +++++|.+++... ..+..+++|+.|++++|++..
T Consensus       120 L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccchhccccccccccCCCccceeecCCCcccc
Confidence            9999999975432 567889999999999998754

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.6e-13  Score=87.14  Aligned_cols=36  Identities=28%  Similarity=0.282  Sum_probs=18.3

Q ss_pred             CCCCcEEeccccc-ccccCcccccCCCCCCeEEcCCC
Q 032459           98 LAELEMLWLQNNF-LTRAIPSSIFNLSSLSNLDLSVN  133 (140)
Q Consensus        98 ~~~l~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~n  133 (140)
                      +++|+++++++|. +++.....+..+++|+.|++++|
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C  210 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  210 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             cccccccccccccCCCchhhhhhcccCcCCEEECCCC
Confidence            4555555555543 44444444455555555555553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.5e-11  Score=76.85  Aligned_cols=105  Identities=21%  Similarity=0.244  Sum_probs=80.6

Q ss_pred             eEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCc-chhhccCCCccEEEec
Q 032459            5 LSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTI-PKEIGNVTKLIRLYLR   83 (140)
Q Consensus         5 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~   83 (140)
                      +.++.++..++ .+|+.+   .+.+++|++++|.++...+..|..+++|+++++++|.+.... +..+..++.++.+.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            45666666664 788776   357899999999998555557888999999999999876433 4567788888988876


Q ss_pred             C-CcccccCChhccCCCCCcEEecccccccc
Q 032459           84 G-NQLQGEIPEELGNLAELEMLWLQNNFLTR  113 (140)
Q Consensus        84 ~-~~~~~~~~~~~~~~~~l~~l~l~~~~~~~  113 (140)
                      . +.+....+..+..+++|+++++.+|.++.
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             ccccccccccccccccccccccccchhhhcc
Confidence            5 45665666778888999999999987753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.00  E-value=5.9e-11  Score=77.75  Aligned_cols=114  Identities=18%  Similarity=0.203  Sum_probs=74.4

Q ss_pred             cCCCcccEEEccCCccccC-----CCcCCcCCCCCCEEEeeccccccC----cchhhccCCCccEEEecCCcccccCChh
Q 032459           24 NHLSNLESLFLKNNMFHGK-----IPSTLSNCKRLRNISLSLDDFSGT----IPKEIGNVTKLIRLYLRGNQLQGEIPEE   94 (140)
Q Consensus        24 ~~l~~L~~L~l~~~~l~~~-----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~   94 (140)
                      ..++.++++++++|.++..     +...+...++|+.|++++|.++..    ....+...++|+.|++++|.+.+.....
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            3456788888888877632     233456677888888888877633    2244556778888888888876543322


Q ss_pred             c----c--CCCCCcEEecccccccccCc----cccc-CCCCCCeEEcCCCccce
Q 032459           95 L----G--NLAELEMLWLQNNFLTRAIP----SSIF-NLSSLSNLDLSVNNLTG  137 (140)
Q Consensus        95 ~----~--~~~~l~~l~l~~~~~~~~~~----~~~~-~~~~L~~l~l~~n~~~~  137 (140)
                      +    .  ..+.++++++++|.++....    ..+. ..++|+.|++++|.+.+
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            2    2  23568888888888764322    2222 46778888888887754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.99  E-value=4.6e-11  Score=78.29  Aligned_cols=38  Identities=26%  Similarity=0.415  Sum_probs=19.9

Q ss_pred             CCceEEEccCCeecccCCcc---cccCCCcccEEEccCCcc
Q 032459            2 SSLLSIRFTNNTLFGELPPN---FCNHLSNLESLFLKNNMF   39 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~l   39 (140)
                      ++|+.|++++|.+.......   .+...+.|++|++++|.+
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             CCcccccccccccccccccchhhhhcccccchheecccccc
Confidence            45666777766654321111   113455666666666654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.92  E-value=1.7e-08  Score=65.39  Aligned_cols=118  Identities=25%  Similarity=0.313  Sum_probs=83.0

Q ss_pred             CceEEEccCCeecccCCcccccCCCcccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEe
Q 032459            3 SLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYL   82 (140)
Q Consensus         3 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l   82 (140)
                      ++++|+++++.++ ++|+.    .++|++|++++|+++ .+|..   ..+|+.|++.+|.++ ..+..   .+.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~----~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL----PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC----CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCCC----CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---ccccccccc
Confidence            5789999999874 67752    578999999999998 66754   357889999998887 33321   246889999


Q ss_pred             cCCcccccCChhccCCCCCcEEecccccccccCc------------------ccccCCCCCCeEEcCCCcc
Q 032459           83 RGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP------------------SSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~------------------~~~~~~~~L~~l~l~~n~~  135 (140)
                      ++|.+. ..| .+..+++|+++++.++.++....                  ..+..++.++.++++.|..
T Consensus       106 ~~n~l~-~lp-~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         106 SNNQLE-KLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             CSSCCS-SCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred             cccccc-ccc-chhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccc
Confidence            999887 334 35677889999988887653211                  1233445667777766654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.3e-10  Score=72.47  Aligned_cols=133  Identities=17%  Similarity=0.196  Sum_probs=93.4

Q ss_pred             CCCceEEEccCCeeccc-CCcccccCCCcccEEEccCCc-cccC-CCcCCc-CCCCCCEEEeeccc--cccC-cchhhcc
Q 032459            1 MSSLLSIRFTNNTLFGE-LPPNFCNHLSNLESLFLKNNM-FHGK-IPSTLS-NCKRLRNISLSLDD--FSGT-IPKEIGN   73 (140)
Q Consensus         1 l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~-l~~~-~~~~~~-~~~~L~~l~l~~~~--~~~~-~~~~~~~   73 (140)
                      +++|+.|++++|...++ .-..+...+++|++|++++|. +++. ....+. ..+.|+.|++.++.  ++.. .......
T Consensus        94 ~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~  173 (284)
T d2astb2          94 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR  173 (284)
T ss_dssp             CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred             CCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccc
Confidence            47899999999753222 112233568999999999863 4421 111222 24689999998753  3322 2223346


Q ss_pred             CCCccEEEecCCc-ccccCChhccCCCCCcEEecccc-cccccCcccccCCCCCCeEEcCCC
Q 032459           74 VTKLIRLYLRGNQ-LQGEIPEELGNLAELEMLWLQNN-FLTRAIPSSIFNLSSLSNLDLSVN  133 (140)
Q Consensus        74 ~~~L~~l~l~~~~-~~~~~~~~~~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~L~~l~l~~n  133 (140)
                      +++|++|++++|. +++.....+..+++|+++++++| .+++.....++.+++|+.|+++++
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            7899999999864 67667777888999999999996 477666667888999999999987

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=8.1e-11  Score=79.03  Aligned_cols=112  Identities=19%  Similarity=0.194  Sum_probs=77.8

Q ss_pred             CCceEEEccCCeecccCCcccccCCCcccEEEccCCcccc----CCCcCCcCCCCCCEEEeeccccccCcchh----hcc
Q 032459            2 SSLLSIRFTNNTLFGELPPNFCNHLSNLESLFLKNNMFHG----KIPSTLSNCKRLRNISLSLDDFSGTIPKE----IGN   73 (140)
Q Consensus         2 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~----~~~   73 (140)
                      ++|++|+++++.+++..-..++..+++++.|+|.+|++++    .++..+..+++|+.|++++|.++......    +..
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            4688899999888654334455677888999999998873    23344567888999999888876322222    222


Q ss_pred             -CCCccEEEecCCcccccC----ChhccCCCCCcEEecccccccc
Q 032459           74 -VTKLIRLYLRGNQLQGEI----PEELGNLAELEMLWLQNNFLTR  113 (140)
Q Consensus        74 -~~~L~~l~l~~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~  113 (140)
                       ..+|+.|++++|.+++..    +..+..+++|+++++++|.+.+
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence             246888888888876442    3445567888888888887764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=4.2e-11  Score=80.45  Aligned_cols=37  Identities=22%  Similarity=0.289  Sum_probs=16.3

Q ss_pred             CCCEEEeeccccccCc----chhhccCCCccEEEecCCccc
Q 032459           52 RLRNISLSLDDFSGTI----PKEIGNVTKLIRLYLRGNQLQ   88 (140)
Q Consensus        52 ~L~~l~l~~~~~~~~~----~~~~~~~~~L~~l~l~~~~~~   88 (140)
                      +|+.|++++|.++...    +..+..+++|+.+++++|.+.
T Consensus        85 ~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          85 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            4555555555443221    222333445555555555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.82  E-value=2.6e-08  Score=64.59  Aligned_cols=96  Identities=25%  Similarity=0.334  Sum_probs=75.5

Q ss_pred             cccEEEccCCccccCCCcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCChhccCCCCCcEEecc
Q 032459           28 NLESLFLKNNMFHGKIPSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQ  107 (140)
Q Consensus        28 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~  107 (140)
                      ++++|++++++++ .+|..   .++|++|++++|.++ ..|..   ..+|+.|++.+|+++. .+.   -.+.|++++++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~~---lp~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LSD---LPPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCS---CCTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hhh---hcccccccccc
Confidence            6889999999998 67753   468999999999998 55654   4589999999998873 222   12569999999


Q ss_pred             cccccccCcccccCCCCCCeEEcCCCccce
Q 032459          108 NNFLTRAIPSSIFNLSSLSNLDLSVNNLTG  137 (140)
Q Consensus       108 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  137 (140)
                      +|.++. +|. ++.+++|+.++++++.+.+
T Consensus       107 ~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         107 NNQLEK-LPE-LQNSSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             SSCCSS-CCC-CTTCTTCCEEECCSSCCSC
T ss_pred             cccccc-ccc-hhhhccceeeccccccccc
Confidence            999874 443 5788999999999887654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2.3e-08  Score=58.67  Aligned_cols=82  Identities=26%  Similarity=0.274  Sum_probs=57.6

Q ss_pred             cCCCCCCEEEeeccccccCc--chhhccCCCccEEEecCCcccccCChhccCCCCCcEEecccccccccCc-------cc
Q 032459           48 SNCKRLRNISLSLDDFSGTI--PKEIGNVTKLIRLYLRGNQLQGEIPEELGNLAELEMLWLQNNFLTRAIP-------SS  118 (140)
Q Consensus        48 ~~~~~L~~l~l~~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-------~~  118 (140)
                      ..++.|+.|++++|+++...  +..+..+++|+.+++++|.+.....-......+++.+++.+|+++....       ..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            45788889999999887543  3456678889999999998875433233345578888999998875433       23


Q ss_pred             ccCCCCCCeEE
Q 032459          119 IFNLSSLSNLD  129 (140)
Q Consensus       119 ~~~~~~L~~l~  129 (140)
                      +..+|+|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            45678888775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.43  E-value=4e-08  Score=57.88  Aligned_cols=111  Identities=16%  Similarity=0.124  Sum_probs=65.8

Q ss_pred             cCCCcccEEEccCC-ccccC----CCcCCcCCCCCCEEEeeccccccC----cchhhccCCCccEEEecCCcccccCC--
Q 032459           24 NHLSNLESLFLKNN-MFHGK----IPSTLSNCKRLRNISLSLDDFSGT----IPKEIGNVTKLIRLYLRGNQLQGEIP--   92 (140)
Q Consensus        24 ~~l~~L~~L~l~~~-~l~~~----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~--   92 (140)
                      ...+.|++|+++++ .++..    +...+...++|+.|++++|.++..    ....+...+.++.+++++|.+.+...  
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            44567777777753 34422    223345566777777777776532    22344455677888888777764322  


Q ss_pred             --hhccCCCCCcEEeccccccccc-------CcccccCCCCCCeEEcCCCc
Q 032459           93 --EELGNLAELEMLWLQNNFLTRA-------IPSSIFNLSSLSNLDLSVNN  134 (140)
Q Consensus        93 --~~~~~~~~l~~l~l~~~~~~~~-------~~~~~~~~~~L~~l~l~~n~  134 (140)
                        ..+...+.|+++++.+|.....       +.+.+...++|+.++++.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence              2344567788888877654322       23344455778888876653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.9e-08  Score=58.99  Aligned_cols=82  Identities=23%  Similarity=0.207  Sum_probs=61.3

Q ss_pred             cCCCcccEEEccCCccccCC--CcCCcCCCCCCEEEeeccccccCcchhhccCCCccEEEecCCcccccCC-------hh
Q 032459           24 NHLSNLESLFLKNNMFHGKI--PSTLSNCKRLRNISLSLDDFSGTIPKEIGNVTKLIRLYLRGNQLQGEIP-------EE   94 (140)
Q Consensus        24 ~~l~~L~~L~l~~~~l~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-------~~   94 (140)
                      ..++.|++|++++|.++...  +..+..+++|+.|++++|.++...+-......+++.+++.+|++.....       ..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            45889999999999998432  3345678999999999999985444344455679999999999875433       22


Q ss_pred             ccCCCCCcEEe
Q 032459           95 LGNLAELEMLW  105 (140)
Q Consensus        95 ~~~~~~l~~l~  105 (140)
                      +..+++|++||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            45689999875

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.17  E-value=2.2e-07  Score=54.63  Aligned_cols=109  Identities=8%  Similarity=0.047  Sum_probs=75.4

Q ss_pred             CCceEEEccCC-eecccCCcc---cccCCCcccEEEccCCccccCCCc----CCcCCCCCCEEEeeccccccCcc----h
Q 032459            2 SSLLSIRFTNN-TLFGELPPN---FCNHLSNLESLFLKNNMFHGKIPS----TLSNCKRLRNISLSLDDFSGTIP----K   69 (140)
Q Consensus         2 ~~L~~L~l~~~-~~~~~~~~~---~~~~l~~L~~L~l~~~~l~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~----~   69 (140)
                      ++|++|+++++ .+....-..   .+...+.|++|++++|.+.+....    .+...+.|+.|++++|.++....    .
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            67999999875 343221111   225667899999999998843333    34457899999999999874322    3


Q ss_pred             hhccCCCccEEEecCCccccc-------CChhccCCCCCcEEeccccc
Q 032459           70 EIGNVTKLIRLYLRGNQLQGE-------IPEELGNLAELEMLWLQNNF  110 (140)
Q Consensus        70 ~~~~~~~L~~l~l~~~~~~~~-------~~~~~~~~~~l~~l~l~~~~  110 (140)
                      ++...+.|++|++.+|++...       ....+...+.++.++++.+.
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            455668899999998865432       12344467889999886654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.86  E-value=1.7e-06  Score=50.51  Aligned_cols=112  Identities=16%  Similarity=0.138  Sum_probs=68.5

Q ss_pred             cCCCcccEEEccC-CccccC----CCcCCcCCCCCCEEEeeccccccCcc----hhhccCCCccEEEecCCcccccCC--
Q 032459           24 NHLSNLESLFLKN-NMFHGK----IPSTLSNCKRLRNISLSLDDFSGTIP----KEIGNVTKLIRLYLRGNQLQGEIP--   92 (140)
Q Consensus        24 ~~l~~L~~L~l~~-~~l~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~--   92 (140)
                      ...+.|++|++.+ +.++..    +...+...++|+.|++++|.++....    ..+.....++.+++.++.+.+...  
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4567788888876 345422    23344566778888888887763322    334456778888888877654322  


Q ss_pred             --hhccCCCCCcEEecc--ccccccc----CcccccCCCCCCeEEcCCCcc
Q 032459           93 --EELGNLAELEMLWLQ--NNFLTRA----IPSSIFNLSSLSNLDLSVNNL  135 (140)
Q Consensus        93 --~~~~~~~~l~~l~l~--~~~~~~~----~~~~~~~~~~L~~l~l~~n~~  135 (140)
                        ..+...++++.+++.  +|.+.+.    +.+.+...++|+.|++..+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence              344456777776553  4555432    334455677888888876643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.58  E-value=4e-06  Score=48.92  Aligned_cols=110  Identities=12%  Similarity=0.096  Sum_probs=74.0

Q ss_pred             CCceEEEccCC-eecccCCcc---cccCCCcccEEEccCCccccCC----CcCCcCCCCCCEEEeeccccccCc----ch
Q 032459            2 SSLLSIRFTNN-TLFGELPPN---FCNHLSNLESLFLKNNMFHGKI----PSTLSNCKRLRNISLSLDDFSGTI----PK   69 (140)
Q Consensus         2 ~~L~~L~l~~~-~~~~~~~~~---~~~~l~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~l~l~~~~~~~~~----~~   69 (140)
                      ++|++|+++++ .+....-..   .+...+.|++|++++|.++...    ...+.....++.+++..+.++...    ..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            68999999874 453222111   2256789999999999987432    233455789999999999886332    24


Q ss_pred             hhccCCCccEEEec--CCcccccC----ChhccCCCCCcEEecccccc
Q 032459           70 EIGNVTKLIRLYLR--GNQLQGEI----PEELGNLAELEMLWLQNNFL  111 (140)
Q Consensus        70 ~~~~~~~L~~l~l~--~~~~~~~~----~~~~~~~~~l~~l~l~~~~~  111 (140)
                      .+...+.++.+++.  .|.+.+..    ...+...+.++.+++..+..
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            55567788876664  55665432    23455789999999876644