Citrus Sinensis ID: 032462

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNPLGLY
Secondary Structure (PSIPRED)
ccccccEEEEcccHHHHHHHHHHHHHcccccccccccccccccEEEEEEEcccccccccccccccEEEEEEcEEccccHHHHHHHHHHHccccEEEEEEEEEccHHHHHHHHHHHHcccEEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEccccccHHcccccccEEEEEEEEEcHHHHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHcccEEEEcccccccHcccccccc
Coil and Loop (DISEMBL)
mallgcnvittdqieVLPLLKRNvewntsrisqmnpgsdllgSIQAVeldwgnedhikavappfdyiigTDVVYAEHLLEPLLQTIfalsgpkttiLLGYEIRSTSVHEQMLQMWKSNfnvklvpkakestmwgnplgly
Flexible Loop (DISEMBL)
mallgcnvittdqievlpLLKRNVEWNTSRisqmnpgsdLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNfnvklvpkakestmwgnplgly
Low Complexity Region (SEG)
MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNPLGLY
Disordered region (IsUnstruct)
**LLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVP***************
Disordered Region (DISOPRED)
MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQ*****DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNPLGLY
Disordered Region (DISEMBL)
MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNPLGLY
Disordered Region (DISPRO)
*ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNPLGLY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNPLGLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	140	2.2.26 [Sep-21-2011]
Q9H867	229	Protein-lysine methyltran	yes	no	0.864	0.528	0.316	5e-12
Q8C436	228	Protein-lysine methyltran	yes	no	0.821	0.504	0.343	7e-12
Q8BLU2	248	Protein-lysine methyltran	no	no	0.871	0.491	0.308	3e-08
A4IGU3	215	Protein-lysine methyltran	no	no	0.835	0.544	0.302	8e-08
Q5VZV1	264	Protein-lysine methyltran	no	no	0.871	0.462	0.300	1e-07
Q5BLD8	218	Protein-lysine methyltran	yes	no	0.807	0.518	0.341	2e-07
A6QP81	257	Protein-lysine methyltran	yes	no	0.871	0.474	0.293	2e-07
Q9CQL0	218	Protein-lysine methyltran	no	no	0.8	0.513	0.346	9e-07
Q8CDZ2	244	Protein-lysine methyltran	no	no	0.671	0.385	0.375	2e-06
Q8WXB1	218	Protein-lysine methyltran	no	no	0.8	0.513	0.330	2e-06

>sp|Q9H867|MT21D_HUMAN Protein-lysine methyltransferase METTL21D OS=Homo sapiens GN=METTL21D PE=1 SV=2

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 15/136 (11%)

Query: 2   ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 61
           A LG +V+ TD  E+  LLK N+  N   ++         GS+QA  L WG E  I+   
Sbjct: 86  ATLGADVVVTDLEELQDLLKMNINMNKHLVT---------GSVQAKVLKWGEE--IEGFP 134

Query: 62  PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----SVHEQMLQMWKS 117
            P D+I+  D +Y E  LEPLL+T+  +SG +T I+  YE R+      + ++  ++ + 
Sbjct: 135 SPPDFILMADCIYYEESLEPLLKTLKDISGFETCIICCYEQRTMGKNPEIEKKYFELLQL 194

Query: 118 NFNVKLVPKAKESTMW 133
           +F+ + +P  K    +
Sbjct: 195 DFDFEKIPLEKHDEEY 210

Probable methyltransferase.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q8C436|MT21D_MOUSE Protein-lysine methyltransferase METTL21D OS=Mus musculus GN=Mettl21d PE=2 SV=2

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 72/131 (54%), Gaps = 16/131 (12%)

Query: 2   ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 61
           A LG +VI TD  E+  LLK N++ N   ++         GS+QA  L WG +  I+ + 
Sbjct: 86  ATLGADVIVTDLEELQDLLKMNIDMNKHLVT---------GSVQAKVLKWGED--IEDLM 134

Query: 62  PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----SVHEQMLQMWKS 117
            P DYI+  D +Y E  LEPLL+T+  LSG +T I+  YE R+      + ++  ++ + 
Sbjct: 135 SP-DYILMADCIYYEESLEPLLKTLKDLSGSETCIICCYEQRTMGKNPEIEKKYFELLQL 193

Query: 118 NFNVKLVPKAK 128
           +F+ + +P  K
Sbjct: 194 DFDFEEIPLDK 204

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8BLU2|MT21C_MOUSE Protein-lysine methyltransferase METTL21C OS=Mus musculus GN=Mettl21c PE=2 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 11/133 (8%)

Query: 2   ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN--EDHIKA 59
           +LLG  V  TD  +VL  L+ N+  NT   +   P        +  EL WG   E     
Sbjct: 115 SLLGAQVTATDLPDVLGNLQYNILKNTLECTAHLP--------EVRELVWGEDLEQSFPK 166

Query: 60  VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNF 119
               +DY++ +DVVY  + L+ LL T+  LS P T +L   + R ++ +E  L  +K  F
Sbjct: 167 STCCYDYVLASDVVYHHYFLDKLLATMVYLSQPGTVVLWANKFRFSADYE-FLGKFKQAF 225

Query: 120 NVKLVPKAKESTM 132
           +  L+ +  ES++
Sbjct: 226 DTTLLAEYSESSV 238

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A4IGU3|MT21A_XENTR Protein-lysine methyltransferase METTL21A OS=Xenopus tropicalis GN=mettl21a PE=2 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 12/129 (9%)

Query: 2   ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 61
           ALLG  V  TD+   +  L+ NV  N  +        D L  +    L+WG         
Sbjct: 84  ALLGAQVTITDRDLAMEFLRMNVRDNIPK--------DSLHRVSVRALNWGKS---LEEF 132

Query: 62  PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV 121
             +D+I+G D++Y E     LLQT   LS  ++ ILL   +R    H+  L+M K +F +
Sbjct: 133 STYDFILGADIIYLEETFPDLLQTFLHLSSQQSVILLSSRLRYQRDHD-FLEMMKLHFTI 191

Query: 122 KLVPKAKES 130
             V   K +
Sbjct: 192 ADVYYDKNT 200

Probable methyltransferase.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5VZV1|MT21C_HUMAN Protein-lysine methyltransferase METTL21C OS=Homo sapiens GN=METTL21C PE=1 SV=1

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 11/133 (8%)

Query: 2   ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE--DHIKA 59
           ++LG  V  TD  +VL  L+ N+  NT + +   P        +  EL WG +   +   
Sbjct: 131 SILGAQVTATDLPDVLGNLQYNLLKNTLQCTAHLP--------EVKELVWGEDLDKNFPK 182

Query: 60  VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNF 119
            A  +DY++ +DVVY  + L+ LL T+  LS P T +L   + R ++ +E  L  +K  F
Sbjct: 183 SAFYYDYVLASDVVYHHYFLDKLLTTMVYLSQPGTVLLWANKFRFSTDYE-FLDKFKQVF 241

Query: 120 NVKLVPKAKESTM 132
           +  L+ +  ES++
Sbjct: 242 DTTLLAEYPESSV 254

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5BLD8|MT21A_DANRE Protein-lysine methyltransferase METTL21A OS=Danio rerio GN=mettl21a PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 56/123 (45%), Gaps = 10/123 (8%)

Query: 2   ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 61
           ALLG NV  TD+   L  L  NV  N  +  Q         ++Q  EL WG    +    
Sbjct: 84  ALLGANVTITDREPALEFLTANVHENIPQGRQK--------AVQVSELTWGENLDLYPQG 135

Query: 62  PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV 121
             +D I+G D+VY E     LLQT+  LS   T +LL   IR     E+ L   +  F+V
Sbjct: 136 G-YDLILGADIVYLEETFPALLQTLEHLSSGDTVVLLSCRIRYER-DERFLTELRQRFSV 193

Query: 122 KLV 124
           + V
Sbjct: 194 QEV 196

Probable methyltransferase.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A6QP81|MT21C_BOVIN Protein-lysine methyltransferase METTL21C OS=Bos taurus GN=METTL21C PE=2 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 11/133 (8%)

Query: 2   ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN--EDHIKA 59
           ++LG  V  TD  +VL  L+ N+  NT   +   P        +  EL WG   E     
Sbjct: 124 SILGAQVTATDLPDVLGNLQYNLLKNTLNCTTYLP--------EVKELVWGEGLEQSFPK 175

Query: 60  VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNF 119
               +DY++ +DVVY  + L+ LL T+  L  P T +L   + R ++ +E  L  +K  F
Sbjct: 176 STLYYDYVLASDVVYHHYFLDKLLATMVYLCQPGTVLLWANKFRFSTDYE-FLDKFKQVF 234

Query: 120 NVKLVPKAKESTM 132
           +  L+ +++ES++
Sbjct: 235 DTTLLAESQESSI 247

Probable methyltransferase.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9CQL0|MT21A_MOUSE Protein-lysine methyltransferase METTL21A OS=Mus musculus GN=Mettl21A PE=2 SV=1

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 57/124 (45%), Gaps = 12/124 (9%)

Query: 2   ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 61
           ALLG  V  TD+   L  LK NVE N      + P + +       EL WG   ++++ +
Sbjct: 84  ALLGAQVTITDRKVALEFLKSNVEANLP--PHIQPKAVV------KELTWGQ--NLESFS 133

Query: 62  P-PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN 120
           P  FD I+G DV+Y E     LLQT+  L    + ILL   IR        L M +  F 
Sbjct: 134 PGEFDLILGADVIYLEDTFTDLLQTLGHLCSNNSVILLACRIRYER-DSNFLTMLERQFT 192

Query: 121 VKLV 124
           V  V
Sbjct: 193 VSKV 196

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8CDZ2|MT21E_MOUSE Protein-lysine methyltransferase METTL21E OS=Mus musculus GN=Mettl21e PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 49/104 (47%), Gaps = 10/104 (9%)

Query: 2   ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN--EDHIKA 59
           +LLG  VI TD    LP L  N+++N SR ++M          Q  EL WG   + +   
Sbjct: 108 SLLGARVIATD----LPELLGNLQYNISRNTKMKCKH----LPQVKELSWGVALDRNFPR 159

Query: 60  VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 103
            +  FDYI+  DVVYA   LE LL T   L    T IL     R
Sbjct: 160 SSNNFDYILAADVVYAHPFLEELLMTFDHLCKETTIILWAMRFR 203

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8WXB1|MT21A_HUMAN Protein-lysine methyltransferase METTL21A OS=Homo sapiens GN=METTL21A PE=1 SV=2

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 12/124 (9%)

Query: 2   ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 61
           ALLG +V  TD+   L  LK NV+ N      + P       ++  EL WG   ++ + +
Sbjct: 84  ALLGAHVTITDRKVALEFLKSNVQAN------LPPHIQTKTVVK--ELTWGQ--NLGSFS 133

Query: 62  P-PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN 120
           P  FD I+G D++Y E     LLQT+  L    + ILL   IR        L M +  F 
Sbjct: 134 PGEFDLILGADIIYLEETFTDLLQTLEHLCSNHSVILLACRIRYER-DNNFLAMLERQFT 192

Query: 121 VKLV 124
           V+ V
Sbjct: 193 VRKV 196

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
296087474	364	unnamed protein product [Vitis vinifera]	0.971	0.373	0.786	1e-58
225465726	314	PREDICTED: methyltransferase-like protei	0.971	0.433	0.786	2e-58
225436496	314	PREDICTED: methyltransferase-like protei	0.971	0.433	0.779	5e-58
334182376	322	S-adenosylmethionine-dependent methyltra	0.964	0.419	0.727	1e-54
42571401	315	S-adenosylmethionine-dependent methyltra	0.964	0.428	0.727	2e-54
255565427	314	conserved hypothetical protein [Ricinus	0.971	0.433	0.75	3e-54
28973317	232	unknown protein [Arabidopsis thaliana]	0.95	0.573	0.731	1e-53
297849112	322	hypothetical protein ARALYDRAFT_888039 [	0.971	0.422	0.705	2e-53
449496188	309	PREDICTED: methyltransferase-like protei	0.964	0.436	0.727	7e-53
449456044	309	PREDICTED: methyltransferase-like protei	0.964	0.436	0.727	7e-53

>gi|296087474|emb|CBI34063.3| unnamed protein product [Vitis vinifera]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/136 (78%), Positives = 119/136 (87%)

Query: 1   MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 60
           MALLGC+V++TDQ EVLPLL RNVE NTSRI QMNPGSD  GS+Q  ELDWGNEDHIKAV
Sbjct: 132 MALLGCDVVSTDQTEVLPLLMRNVERNTSRIMQMNPGSDSFGSVQVAELDWGNEDHIKAV 191

Query: 61  APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN 120
            PPFD+IIGTDVVYAEHLL+PLL+TIFALSGPKTTILLGYEIRST+VHEQML MWK NF 
Sbjct: 192 NPPFDFIIGTDVVYAEHLLDPLLRTIFALSGPKTTILLGYEIRSTNVHEQMLDMWKQNFE 251

Query: 121 VKLVPKAKESTMWGNP 136
           VK++PKAK    + +P
Sbjct: 252 VKIIPKAKMDRKYQHP 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465726|ref|XP_002263990.1| PREDICTED: methyltransferase-like protein 21D-like [Vitis vinifera]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 107/136 (78%), Positives = 119/136 (87%)

Query: 1   MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 60
           MALLGC+V++TDQ EVLPLL RNVE NTSRI QMNPGSD  GS+Q  ELDWGNEDHIKAV
Sbjct: 82  MALLGCDVVSTDQTEVLPLLMRNVERNTSRIMQMNPGSDSFGSVQVAELDWGNEDHIKAV 141

Query: 61  APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN 120
            PPFD+IIGTDVVYAEHLL+PLL+TIFALSGPKTTILLGYEIRST+VHEQML MWK NF 
Sbjct: 142 NPPFDFIIGTDVVYAEHLLDPLLRTIFALSGPKTTILLGYEIRSTNVHEQMLDMWKQNFE 201

Query: 121 VKLVPKAKESTMWGNP 136
           VK++PKAK    + +P
Sbjct: 202 VKIIPKAKMDRKYQHP 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436496|ref|XP_002273361.1| PREDICTED: methyltransferase-like protein 21D [Vitis vinifera] gi|297734922|emb|CBI17156.3| unnamed protein product [Vitis vinifera]

 Score =  228 bits (582), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 106/136 (77%), Positives = 119/136 (87%)

Query: 1   MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 60
           MALLGC+V++TDQ EVLPLL RNVE NTSRI QMNPGSD  GS++  ELDWGNEDHIKAV
Sbjct: 82  MALLGCDVVSTDQTEVLPLLMRNVERNTSRIMQMNPGSDSFGSVEVAELDWGNEDHIKAV 141

Query: 61  APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN 120
            PPFD+IIGTDVVYAEHLL+PLL+TIFALSGPKTTILLGYEIRST+VHEQML MWK NF 
Sbjct: 142 NPPFDFIIGTDVVYAEHLLDPLLRTIFALSGPKTTILLGYEIRSTNVHEQMLDMWKQNFE 201

Query: 121 VKLVPKAKESTMWGNP 136
           VK++PKAK    + +P
Sbjct: 202 VKIIPKAKMDRKYQHP 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334182376|ref|NP_001184933.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|332190128|gb|AEE28249.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana]

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 99/136 (72%), Positives = 116/136 (85%), Gaps = 1/136 (0%)

Query: 1   MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 60
           +A+LGC+V+TTDQ EVLPLLKRNVEWNTSRI QMNPGS   GS++  ELDWGNEDHI AV
Sbjct: 89  LAMLGCDVVTTDQKEVLPLLKRNVEWNTSRIVQMNPGS-AFGSLRVAELDWGNEDHITAV 147

Query: 61  APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN 120
            PPFDY+IGTDVVY+E LLEPLL+TI ALSGPKTT++LGYEIRST VHE+MLQMWK NF 
Sbjct: 148 EPPFDYVIGTDVVYSEQLLEPLLRTILALSGPKTTVMLGYEIRSTVVHEKMLQMWKDNFE 207

Query: 121 VKLVPKAKESTMWGNP 136
           VK +P++K    + +P
Sbjct: 208 VKTIPRSKMDGEYQDP 223

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42571401|ref|NP_973791.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|332190127|gb|AEE28248.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 99/136 (72%), Positives = 116/136 (85%), Gaps = 1/136 (0%)

Query: 1   MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 60
           +A+LGC+V+TTDQ EVLPLLKRNVEWNTSRI QMNPGS   GS++  ELDWGNEDHI AV
Sbjct: 82  LAMLGCDVVTTDQKEVLPLLKRNVEWNTSRIVQMNPGS-AFGSLRVAELDWGNEDHITAV 140

Query: 61  APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN 120
            PPFDY+IGTDVVY+E LLEPLL+TI ALSGPKTT++LGYEIRST VHE+MLQMWK NF 
Sbjct: 141 EPPFDYVIGTDVVYSEQLLEPLLRTILALSGPKTTVMLGYEIRSTVVHEKMLQMWKDNFE 200

Query: 121 VKLVPKAKESTMWGNP 136
           VK +P++K    + +P
Sbjct: 201 VKTIPRSKMDGEYQDP 216

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565427|ref|XP_002523704.1| conserved hypothetical protein [Ricinus communis] gi|223537008|gb|EEF38644.1| conserved hypothetical protein [Ricinus communis]

 Score =  216 bits (550), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 102/136 (75%), Positives = 114/136 (83%)

Query: 1   MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 60
           MALLGC+V+ TDQ EVLPLL RNVE NTSRI QM+  S    SI+  ELDWGNEDHI+AV
Sbjct: 82  MALLGCDVVATDQKEVLPLLMRNVERNTSRIMQMDTNSVSFRSIKVEELDWGNEDHIRAV 141

Query: 61  APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN 120
            PPFDYIIGTDVVY EHLLEPLLQTIFALSGPKTTI++GYEIRSTSVHEQML MWK NF 
Sbjct: 142 DPPFDYIIGTDVVYTEHLLEPLLQTIFALSGPKTTIMMGYEIRSTSVHEQMLDMWKKNFE 201

Query: 121 VKLVPKAKESTMWGNP 136
           VK++PKAK  + + +P
Sbjct: 202 VKVIPKAKMDSKYQHP 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28973317|gb|AAO63983.1| unknown protein [Arabidopsis thaliana]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 98/134 (73%), Positives = 114/134 (85%), Gaps = 1/134 (0%)

Query: 3   LLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 62
           +LGC+V+TTDQ EVLPLLKRNVEWNTSRI QMNPGS   GS++  ELDWGNEDHI AV P
Sbjct: 1   MLGCDVVTTDQKEVLPLLKRNVEWNTSRIVQMNPGS-AFGSLRVAELDWGNEDHITAVEP 59

Query: 63  PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVK 122
           PFDY+IGTDVVY+E LLEPLL+TI ALSGPKTT++LGYEIRST VHE+MLQMWK NF VK
Sbjct: 60  PFDYVIGTDVVYSEQLLEPLLRTILALSGPKTTVMLGYEIRSTVVHEKMLQMWKDNFEVK 119

Query: 123 LVPKAKESTMWGNP 136
            +P++K    + +P
Sbjct: 120 TIPRSKMDGEYQDP 133

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849112|ref|XP_002892437.1| hypothetical protein ARALYDRAFT_888039 [Arabidopsis lyrata subsp. lyrata] gi|297338279|gb|EFH68696.1| hypothetical protein ARALYDRAFT_888039 [Arabidopsis lyrata subsp. lyrata]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 96/136 (70%), Positives = 115/136 (84%)

Query: 1   MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 60
           +A+LGC+V+TTDQ EVLPLLKRNVEWNTS I QM PGS   GS++  ELDWGNEDHI+AV
Sbjct: 82  LAMLGCDVVTTDQKEVLPLLKRNVEWNTSTILQMTPGSASFGSLRVAELDWGNEDHIRAV 141

Query: 61  APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN 120
            PPFDY+IGTDVVY+E LLEPLL+TI ALSGPKTT++LGYEIRST VH++MLQMWK NF 
Sbjct: 142 GPPFDYVIGTDVVYSEQLLEPLLRTILALSGPKTTVMLGYEIRSTVVHDKMLQMWKDNFE 201

Query: 121 VKLVPKAKESTMWGNP 136
           VK +P++K    + +P
Sbjct: 202 VKTIPRSKMDGEYQDP 217

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496188|ref|XP_004160067.1| PREDICTED: methyltransferase-like protein 21D-like [Cucumis sativus]

 Score =  211 bits (538), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 99/136 (72%), Positives = 115/136 (84%), Gaps = 1/136 (0%)

Query: 1   MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 60
           MALLGC+V+ TDQ EVLP+L RN+E NT  ++QMNP SD  GSI+A ELDWGNEDHIKAV
Sbjct: 82  MALLGCDVVATDQREVLPILSRNIERNTPSLAQMNP-SDSFGSIRAAELDWGNEDHIKAV 140

Query: 61  APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN 120
            PPFD+IIGTDVVYAEHLLEPLL TI ALSGPKTTI+LGYEIRST+VHEQML+MWK NF 
Sbjct: 141 GPPFDFIIGTDVVYAEHLLEPLLMTIHALSGPKTTIMLGYEIRSTNVHEQMLEMWKKNFE 200

Query: 121 VKLVPKAKESTMWGNP 136
           VK V ++K  + + +P
Sbjct: 201 VKTVSQSKMDSQYQHP 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456044|ref|XP_004145760.1| PREDICTED: methyltransferase-like protein 21D-like [Cucumis sativus]

 Score =  211 bits (538), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 99/136 (72%), Positives = 115/136 (84%), Gaps = 1/136 (0%)

Query: 1   MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 60
           MALLGC+V+ TDQ EVLP+L RN+E NT  ++QMNP SD  GSI+A ELDWGNEDHIKAV
Sbjct: 82  MALLGCDVVATDQREVLPILSRNIERNTPSLAQMNP-SDSFGSIRAAELDWGNEDHIKAV 140

Query: 61  APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN 120
            PPFD+IIGTDVVYAEHLLEPLL TI ALSGPKTTI+LGYEIRST+VHEQML+MWK NF 
Sbjct: 141 GPPFDFIIGTDVVYAEHLLEPLLMTIHALSGPKTTIMLGYEIRSTNVHEQMLEMWKKNFE 200

Query: 121 VKLVPKAKESTMWGNP 136
           VK V ++K  + + +P
Sbjct: 201 VKTVSQSKMDSQYQHP 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
TAIR|locus:2197234	316	AT1G73320 "AT1G73320" [Arabido	0.864	0.382	0.340	4.9e-13
RGD|1306228	274	Mettl21d "methyltransferase li	0.821	0.419	0.351	2.7e-12
MGI|MGI:2684917	228	Mettl21d "methyltransferase li	0.821	0.504	0.358	3.1e-12
UNIPROTKB|Q9H867	229	METTL21D "Protein-lysine methy	0.828	0.506	0.328	8.2e-12
TAIR|locus:2167618	234	AT5G44170 "AT5G44170" [Arabido	0.814	0.487	0.338	8.2e-12
ZFIN|ZDB-GENE-060825-19	223	mettl21d "methyltransferase li	0.892	0.560	0.294	2.5e-10
RGD|1561425	248	Mettl21c "methyltransferase li	0.871	0.491	0.315	4.2e-09
UNIPROTKB|A4IGU3	215	mettl21a "Protein-lysine methy	0.771	0.502	0.308	1.1e-08
ZFIN|ZDB-GENE-050320-145	218	mettl21a "methyltransferase li	0.807	0.518	0.341	1.5e-08
TAIR|locus:2078002	251	AT3G50850 "AT3G50850" [Arabido	0.65	0.362	0.333	1.6e-08

TAIR|locus:2197234 AT1G73320 "AT1G73320" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 4.9e-13, P = 4.9e-13
 Identities = 45/132 (34%), Positives = 70/132 (53%)

Query:     2 ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 61
             ALLG N + TD  + L LLK+N++ N  R        +  GS    EL WG++     + 
Sbjct:   164 ALLGGNAVLTDLPDRLRLLKKNIQTNLHR-------GNTRGSAIVQELVWGDDPDPDLIE 216

Query:    62 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV 121
             P  DY++G+DV+Y+E  +  L++T+  L   +TTI L  E+R+ +V E  L+    +F +
Sbjct:   217 PFPDYVLGSDVIYSEEAVHHLVKTLLQLCSDQTTIFLSGELRNDAVLEYFLETALKDFAI 276

Query:   122 KLVPKAKESTMW 133
               V    E T W
Sbjct:   277 GRV----EQTQW 284

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

RGD|1306228 Mettl21d "methyltransferase like 21D" [Rattus norvegicus (taxid:10116)]

 Score = 166 (63.5 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 46/131 (35%), Positives = 72/131 (54%)

Query:     2 ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 61
             A LG +VI TD  E+  LLK N+  N   ++         GS+QA  L WG  D I+ + 
Sbjct:   132 ATLGADVIVTDLEELQDLLKMNINMNKHLVT---------GSVQAKVLKWG--DDIEDLM 180

Query:    62 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS----VHEQMLQMWKS 117
              P DYI+  D +Y E  LEPLL+T+  LSG +T+I+  YE R+      + ++  ++ + 
Sbjct:   181 SP-DYILMADCIYYEESLEPLLKTLKDLSGSETSIICCYEQRTMGKNPEIEKKYFELLQL 239

Query:   118 NFNVKLVPKAK 128
             +F+ + +P  K
Sbjct:   240 DFDFEKIPLDK 250

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:2684917 Mettl21d "methyltransferase like 21D" [Mus musculus (taxid:10090)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 47/131 (35%), Positives = 73/131 (55%)

Query:     2 ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 61
             A LG +VI TD  E+  LLK N++ N   ++         GS+QA  L WG ED I+ + 
Sbjct:    86 ATLGADVIVTDLEELQDLLKMNIDMNKHLVT---------GSVQAKVLKWG-ED-IEDLM 134

Query:    62 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS----VHEQMLQMWKS 117
              P DYI+  D +Y E  LEPLL+T+  LSG +T I+  YE R+      + ++  ++ + 
Sbjct:   135 SP-DYILMADCIYYEESLEPLLKTLKDLSGSETCIICCYEQRTMGKNPEIEKKYFELLQL 193

Query:   118 NFNVKLVPKAK 128
             +F+ + +P  K
Sbjct:   194 DFDFEEIPLDK 204

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0018023 "peptidyl-lysine trimethylation" evidence=ISO

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|Q9H867 METTL21D "Protein-lysine methyltransferase METTL21D" [Homo sapiens (taxid:9606)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 43/131 (32%), Positives = 70/131 (53%)

Query:     2 ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 61
             A LG +V+ TD  E+  LLK N+  N   ++         GS+QA  L WG E  I+   
Sbjct:    86 ATLGADVVVTDLEELQDLLKMNINMNKHLVT---------GSVQAKVLKWGEE--IEGFP 134

Query:    62 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS----VHEQMLQMWKS 117
              P D+I+  D +Y E  LEPLL+T+  +SG +T I+  YE R+      + ++  ++ + 
Sbjct:   135 SPPDFILMADCIYYEESLEPLLKTLKDISGFETCIICCYEQRTMGKNPEIEKKYFELLQL 194

Query:   118 NFNVKLVPKAK 128
             +F+ + +P  K
Sbjct:   195 DFDFEKIPLEK 205

GO:0005575 "cellular_component" evidence=ND

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IDA

GO:0018023 "peptidyl-lysine trimethylation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2167618 AT5G44170 "AT5G44170" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 42/124 (33%), Positives = 62/124 (50%)

Query:     3 LLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 61
             LLG   ++ TD   V+P LK N++ N + +     G  L  SI    + W N D I A+ 
Sbjct:    89 LLGLTEIVLTDIAPVMPALKHNLKRNKTAL-----GKSLKTSI----VYWNNRDQISALK 139

Query:    62 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV 121
             PPFD +I  DVVY E  +  L+  +  L      +LLGY+IRS    +   ++    F +
Sbjct:   140 PPFDLVIAADVVYIEESVGQLVTAMELLVADDGAVLLGYQIRSPEADKLFWELCDIVFKI 199

Query:   122 KLVP 125
             + VP
Sbjct:   200 EKVP 203

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-060825-19 mettl21d "methyltransferase like 21D" [Danio rerio (taxid:7955)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 41/139 (29%), Positives = 70/139 (50%)

Query:     2 ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 61
             A LG NV  TD  ++ PLL+ N++ N   I          GS+ A  L WG   ++    
Sbjct:    83 ASLGANVTLTDLEDLQPLLQLNIKKNQQLIHT--------GSVTAKVLKWGA--NVDDFL 132

Query:    62 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQM----LQMWKS 117
             P   YI+  D +Y E  +EPL++T+  L+GP+T I+  YE R+  V+ ++     ++   
Sbjct:   133 PHPHYILMADCIYYEQSVEPLVETLKLLAGPETCIICCYEQRTVGVNPEIEKRFFELLLQ 192

Query:   118 NFNVKLVPKAKESTMWGNP 136
             +F  + +   K+   + +P
Sbjct:   193 DFQSEEISSEKQDPEFNSP 211

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

RGD|1561425 Mettl21c "methyltransferase like 21C" [Rattus norvegicus (taxid:10116)]

 Score = 137 (53.3 bits), Expect = 4.2e-09, P = 4.2e-09
 Identities = 42/133 (31%), Positives = 66/133 (49%)

Query:     2 ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 61
             +LLG  V  TD  +VL  L+ N+  NT   +   P        +  EL WG +   K   
Sbjct:   115 SLLGAQVTATDLPDVLGNLQYNISKNTLECTAHLP--------EVKELVWGEDLDQKFPK 166

Query:    62 PPF--DYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNF 119
               F  DY++ +DVVY  + L+ LL T+  LS P T +L   + R ++ +E  L  +K  F
Sbjct:   167 SSFYYDYVLASDVVYHHYFLDKLLATMVYLSQPGTVVLWANKFRFSTDYE-FLDKFKQAF 225

Query:   120 NVKLVPKAKESTM 132
             +  L+ +  ES++
Sbjct:   226 DTTLLAEHSESSV 238

GO:0006479 "protein methylation" evidence=ISO

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0018022 "peptidyl-lysine methylation" evidence=ISO

UNIPROTKB|A4IGU3 mettl21a "Protein-lysine methyltransferase METTL21A" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 131 (51.2 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 37/120 (30%), Positives = 58/120 (48%)

Query:     2 ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 61
             ALLG  V  TD+   +  L+ NV  N  +        D L  +    L+WG    ++  +
Sbjct:    84 ALLGAQVTITDRDLAMEFLRMNVRDNIPK--------DSLHRVSVRALNWGKS--LEEFS 133

Query:    62 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV 121
               +D+I+G D++Y E     LLQT   LS  ++ ILL   +R    H+  L+M K +F +
Sbjct:   134 T-YDFILGADIIYLEETFPDLLQTFLHLSSQQSVILLSSRLRYQRDHD-FLEMMKLHFTI 191

GO:0006479 "protein methylation" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0018022 "peptidyl-lysine methylation" evidence=ISS

ZFIN|ZDB-GENE-050320-145 mettl21a "methyltransferase like 21A" [Danio rerio (taxid:7955)]

 Score = 130 (50.8 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 42/123 (34%), Positives = 56/123 (45%)

Query:     2 ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 61
             ALLG NV  TD+   L  L  NV  N  +  Q         ++Q  EL WG    +    
Sbjct:    84 ALLGANVTITDREPALEFLTANVHENIPQGRQK--------AVQVSELTWGENLDLYPQG 135

Query:    62 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV 121
               +D I+G D+VY E     LLQT+  LS   T +LL   IR     E+ L   +  F+V
Sbjct:   136 G-YDLILGADIVYLEETFPALLQTLEHLSSGDTVVLLSCRIRYER-DERFLTELRQRFSV 193

Query:   122 KLV 124
             + V
Sbjct:   194 QEV 196

GO:0006479 "protein methylation" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2078002 AT3G50850 "AT3G50850" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 33/99 (33%), Positives = 48/99 (48%)

Query:     2 ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 61
             A LG NV  TD   V+  LK N + N   +++        G +    L WG  D ++++ 
Sbjct:   108 ATLGANVTVTDLPNVIENLKFNADANAQVVAKFG------GKVHVASLRWGEIDDVESLG 161

Query:    62 PPFDYIIGTDVVYAEHLLEPLLQTI--FALSGPKTTILL 98
                D I+ +DVVY  HL EPLL+T+    L G    + L
Sbjct:   162 QNVDLILASDVVYHVHLYEPLLKTLRFLLLEGSSERVFL 200

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	140
pfam10294	170	pfam10294, Methyltransf_16, Putative methyltransfe	7e-19

>gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase

 Score = 77.4 bits (191), Expect = 7e-19
 Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 12/104 (11%)

Query: 2   ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 61
            L G +V  TD  E + L+K+N+E N            L   + A  LDWG +       
Sbjct: 65  LLPGASVTITDLEEAIELMKKNIELNG-----------LSSKVTAKVLDWGEDLPDDVFD 113

Query: 62  P-PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 104
           P P D I+  D VY E     L +T+  L G +T IL+ Y+ R 
Sbjct: 114 PHPVDLILAADCVYNEDSFPLLEKTLNDLLGKETVILVAYKKRR 157

Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.92
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	99.75
KOG3201	201	consensus Uncharacterized conserved protein [Funct	99.64
COG3897	218	Predicted methyltransferase [General function pred	98.85
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.25
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.08
PRK11207	197	tellurite resistance protein TehB; Provisional	98.03
PRK14968	188	putative methyltransferase; Provisional	98.03
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.99
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	97.99
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.97
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	97.96
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	97.91
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	97.9
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	97.86
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.86
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	97.84
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	97.79
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.77
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.77
PRK12335	287	tellurite resistance protein TehB; Provisional	97.76
PRK14967	223	putative methyltransferase; Provisional	97.73
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	97.72
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	97.69
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	97.61
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.58
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	97.56
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	97.47
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	97.44
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	97.44
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.41
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.39
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	97.33
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.33
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	97.24
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	97.22
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	97.21
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	97.2
PLN02244	340	tocopherol O-methyltransferase	97.18
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.11
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.1
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	97.03
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.01
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	96.95
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	96.91
PLN02336	475	phosphoethanolamine N-methyltransferase	96.91
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	96.91
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	96.89
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	96.87
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	96.86
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	96.85
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	96.76
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	96.72
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	96.72
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	96.71
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	96.7
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	96.68
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	96.68
PLN02490	340	MPBQ/MSBQ methyltransferase	96.61
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	96.6
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	96.6
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	96.6
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.55
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	96.54
COG4123	248	Predicted O-methyltransferase [General function pr	96.52
PRK13255	218	thiopurine S-methyltransferase; Reviewed	96.46
PRK10258	251	biotin biosynthesis protein BioC; Provisional	96.45
PRK07402	196	precorrin-6B methylase; Provisional	96.44
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	96.34
KOG4300	252	consensus Predicted methyltransferase [General fun	96.33
TIGR00452	314	methyltransferase, putative. Known examples to dat	96.28
PRK04457	262	spermidine synthase; Provisional	96.26
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	96.25
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	96.22
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	96.18
PRK08317	241	hypothetical protein; Provisional	96.11
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	96.0
PRK14902	444	16S rRNA methyltransferase B; Provisional	95.99
PRK14901	434	16S rRNA methyltransferase B; Provisional	95.9
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	95.82
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	95.81
TIGR00740	239	methyltransferase, putative. A simple BLAST search	95.79
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	95.77
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	95.68
PRK00536	262	speE spermidine synthase; Provisional	95.67
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	95.65
PLN02233	261	ubiquinone biosynthesis methyltransferase	95.62
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	95.55
COG2890	280	HemK Methylase of polypeptide chain release factor	95.53
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	95.49
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	95.45
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	95.4
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	95.4
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	95.31
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	95.26
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	95.26
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	95.23
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	95.22
PRK14904	445	16S rRNA methyltransferase B; Provisional	95.22
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	95.16
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	95.14
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	95.01
COG2265	432	TrmA SAM-dependent methyltransferases related to t	94.98
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	94.85
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	94.82
PRK04266	226	fibrillarin; Provisional	94.42
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	94.38
COG2520	341	Predicted methyltransferase [General function pred	94.29
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	94.24
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	94.12
PRK14903	431	16S rRNA methyltransferase B; Provisional	94.1
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	94.02
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	93.96
PRK00811	283	spermidine synthase; Provisional	93.91
PLN03075	296	nicotianamine synthase; Provisional	93.88
PLN02336	475	phosphoethanolamine N-methyltransferase	93.81
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	93.67
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	93.62
PLN02232	160	ubiquinone biosynthesis methyltransferase	93.48
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	93.27
KOG2497	262	consensus Predicted methyltransferase [General fun	93.17
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	93.09
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	92.77
PRK13256	226	thiopurine S-methyltransferase; Reviewed	92.63
KOG1271	227	consensus Methyltransferases [General function pre	92.6
PLN02672	1082	methionine S-methyltransferase	92.57
PLN02823	336	spermine synthase	92.55
PTZ00146	293	fibrillarin; Provisional	92.55
PRK10901	427	16S rRNA methyltransferase B; Provisional	92.54
COG4976	287	Predicted methyltransferase (contains TPR repeat)	92.38
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	92.1
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	92.08
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	91.83
PRK03612	521	spermidine synthase; Provisional	91.07
COG0742	187	N6-adenine-specific methylase [DNA replication, re	90.87
PRK06202	232	hypothetical protein; Provisional	90.5
PLN02476	278	O-methyltransferase	90.29
PLN02366	308	spermidine synthase	90.19
KOG3350	217	consensus Uncharacterized conserved protein [Funct	89.59
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	89.33
PRK06922	677	hypothetical protein; Provisional	89.1
PRK04148	134	hypothetical protein; Provisional	88.58
KOG2904	328	consensus Predicted methyltransferase [General fun	88.5
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	88.36
TIGR03438	301	probable methyltransferase. This model represents	88.34
PRK01581	374	speE spermidine synthase; Validated	88.31
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	87.74
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	87.67
PRK05785	226	hypothetical protein; Provisional	87.49
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	87.19
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	86.54
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	85.96
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	85.58
COG4122	219	Predicted O-methyltransferase [General function pr	85.23
COG1041	347	Predicted DNA modification methylase [DNA replicat	84.35
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	84.17
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	83.73
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	82.69
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	82.01
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	81.96
TIGR00438	188	rrmJ cell division protein FtsJ.	81.74
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	81.35
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	80.83
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	80.6
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	80.27

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.92  E-value=2.8e-25  Score=159.55  Aligned_cols=106  Identities=40%  Similarity=0.614  Sum_probs=73.0

Q ss_pred             ccC--CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-cCCCccEEEEeecccCccc
Q 032462            2 ALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEHL   78 (140)
Q Consensus         2 A~l--Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-~~~~~D~IlasDviY~~~~   78 (140)
                      |++  +++|++||+++++++++.|++.|...         ..++++++.|+||++...+. ...+||+||||||+|+++.
T Consensus        64 a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~---------~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~  134 (173)
T PF10294_consen   64 AKLFGAARVVLTDYNEVLELLRRNIELNGSL---------LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEEL  134 (173)
T ss_dssp             HHT-T-SEEEEEE-S-HHHHHHHHHHTT-----------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGG
T ss_pred             HhccCCceEEEeccchhhHHHHHHHHhcccc---------ccccccCcEEEecCcccccccccccCCEEEEecccchHHH
Confidence            445  45999999977999999999999852         35789999999998642222 2468999999999999999


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHh
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS  117 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~  117 (140)
                      +++|++||.+++++++.|+++++.|+.. ...|++++++
T Consensus       135 ~~~L~~tl~~ll~~~~~vl~~~~~R~~~-~~~F~~~~~k  172 (173)
T PF10294_consen  135 FEPLVRTLKRLLKPNGKVLLAYKRRRKS-EQEFFDRLKK  172 (173)
T ss_dssp             HHHHHHHHHHHBTT-TTEEEEEE-S-TG-GCHHHHHH--
T ss_pred             HHHHHHHHHHHhCCCCEEEEEeCEecHH-HHHHHHHhhh
Confidence            9999999999999988899999999764 5789999865

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=99.75  E-value=8.4e-18  Score=126.19  Aligned_cols=114  Identities=34%  Similarity=0.490  Sum_probs=91.5

Q ss_pred             CCCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCC-ccEEEEeecccCccchHHH
Q 032462            4 LGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP-FDYIIGTDVVYAEHLLEPL   82 (140)
Q Consensus         4 lGa~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~-~D~IlasDviY~~~~~~~L   82 (140)
                      .|++|++||.+.++..|+.|...|.....      .-+..+.+..|+||++.......+. +|+||||||+|.++..++|
T Consensus       108 ~~~~v~ltD~~~~~~~L~~~~~~~~~~l~------~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~L  181 (248)
T KOG2793|consen  108 LGAEVVLTDLPKVVENLKFNRDKNNIALN------QLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGL  181 (248)
T ss_pred             hcceeccCCchhhHHHHHHhhhhhhhhhh------hcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhH
Confidence            57799999999999999999998887653      1345899999999999765555555 9999999999999999999


Q ss_pred             HHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH---hcCeEEe
Q 032462           83 LQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK---SNFNVKL  123 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~---~~f~v~~  123 (140)
                      +.|+..++..++.++++|+.|+...-+.+.-.++   ..|.+.+
T Consensus       182 v~tla~ll~~~~~i~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~  225 (248)
T KOG2793|consen  182 VKTLAFLLAKDGTIFLAYPLRRDAAWEIEVLLFKKDLKIFDVVQ  225 (248)
T ss_pred             HHHHHHHHhcCCeEEEEEecccchHHHHHHHHhhhhhccceeee
Confidence            9999999988889999999998643333333333   4455443

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.64  E-value=4.7e-16  Score=109.37  Aligned_cols=107  Identities=22%  Similarity=0.216  Sum_probs=84.7

Q ss_pred             EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccc-cccCCCccEEEEeecccCccchHHHHH
Q 032462            7 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-KAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         7 ~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~-~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      .|.+||+ ++.+.++++-+-.|..+           +--+|..+.|-..... ......||+|+||||+|.++.+++|++
T Consensus        56 ~v~ltdgne~svrnv~ki~~~n~~s-----------~~tsc~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvd  124 (201)
T KOG3201|consen   56 SVWLTDGNEESVRNVEKIRNSNMAS-----------SLTSCCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVD  124 (201)
T ss_pred             eEEEecCCHHHHHHHHHHHhccccc-----------ccceehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHH
Confidence            7999999 77899999999899653           2223334444332211 123569999999999999999999999


Q ss_pred             HHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEEeec
Q 032462           85 TIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVP  125 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~v~  125 (140)
                      ||+.+++|.|.+++..++|.+ +.+.|.+.++ .||.+..-+
T Consensus       125 tIk~lL~p~g~Al~fsPRRg~-sL~kF~de~~~~gf~v~l~e  165 (201)
T KOG3201|consen  125 TIKSLLRPSGRALLFSPRRGQ-SLQKFLDEVGTVGFTVCLEE  165 (201)
T ss_pred             HHHHHhCcccceeEecCcccc-hHHHHHHHHHhceeEEEecc
Confidence            999999999999999999987 4899999995 699987643

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.85  E-value=2.8e-09  Score=77.36  Aligned_cols=85  Identities=21%  Similarity=0.239  Sum_probs=68.5

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      |+.|| .|+.||+ |..+.+++.|++.|+..             +.....+=.-      ....+|+||++|++|+++.+
T Consensus        98 a~aGA~~v~a~d~~P~~~~ai~lNa~angv~-------------i~~~~~d~~g------~~~~~Dl~LagDlfy~~~~a  158 (218)
T COG3897          98 ARAGAAEVVAADIDPWLEQAIRLNAAANGVS-------------ILFTHADLIG------SPPAFDLLLAGDLFYNHTEA  158 (218)
T ss_pred             HHhhhHHHHhcCCChHHHHHhhcchhhccce-------------eEEeeccccC------CCcceeEEEeeceecCchHH
Confidence            56798 8999999 77888899999888753             3333333221      25789999999999999999


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEecCh
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIRST  105 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R~~  105 (140)
                      ..|+.++..+...+..++++.+.|..
T Consensus       159 ~~l~~~~~~l~~~g~~vlvgdp~R~~  184 (218)
T COG3897         159 DRLIPWKDRLAEAGAAVLVGDPGRAY  184 (218)
T ss_pred             HHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence            99999888888888889999998864

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.25  E-value=3.1e-05  Score=55.45  Aligned_cols=108  Identities=15%  Similarity=0.117  Sum_probs=73.3

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc---
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---   77 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~---   77 (140)
                      +..|.+|+..|. ++.+..+++|++.|+.             ++++..-||-+..     ..+||+|++.-..+...   
T Consensus        38 ~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~~-----~~~fD~Vi~n~p~~~~~~~~   99 (179)
T TIGR00537        38 KGKGKCILTTDINPFAVKELRENAKLNNV-------------GLDVVMTDLFKGV-----RGKFDVILFNPPYLPLEDDL   99 (179)
T ss_pred             HhcCCEEEEEECCHHHHHHHHHHHHHcCC-------------ceEEEEccccccc-----CCcccEEEECCCCCCCcchh
Confidence            345668999998 8899999999987752             3555666664431     34899999775433211   


Q ss_pred             ------------------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecCCCC
Q 032462           78 ------------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKE  129 (140)
Q Consensus        78 ------------------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~~~l  129 (140)
                                        ..+.+++.+.++++|+|.+++.......  ...+++.+ +.||.++.+....+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~--~~~~~~~l~~~gf~~~~~~~~~~  168 (179)
T TIGR00537       100 RRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG--EPDTFDKLDERGFRYEIVAERGL  168 (179)
T ss_pred             cccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC--hHHHHHHHHhCCCeEEEEEEeec
Confidence                              1455677777889999998877654432  34556666 46999888765544

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.08  E-value=5.7e-06  Score=62.05  Aligned_cols=88  Identities=18%  Similarity=0.214  Sum_probs=68.8

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCc--cccccCCCccEEEEeecccCcc
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED--HIKAVAPPFDYIIGTDVVYAEH   77 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~--~~~~~~~~~D~IlasDviY~~~   77 (140)
                      ||++|++|+..|. ++.++..+.-...|...                  .+|-...  +......+||+|++.+++=.=.
T Consensus        77 mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~------------------i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~  138 (243)
T COG2227          77 LARLGASVTGIDASEKPIEVAKLHALESGVN------------------IDYRQATVEDLASAGGQFDVVTCMEVLEHVP  138 (243)
T ss_pred             HHHCCCeeEEecCChHHHHHHHHhhhhcccc------------------ccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence            6899999999997 76777777655555432                  3443322  1222247999999999999988


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEEEecChh
Q 032462           78 LLEPLLQTIFALSGPKTTILLGYEIRSTS  106 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~~~R~~~  106 (140)
                      ..+.+++++.++++|+|.++++...|+..
T Consensus       139 dp~~~~~~c~~lvkP~G~lf~STinrt~k  167 (243)
T COG2227         139 DPESFLRACAKLVKPGGILFLSTINRTLK  167 (243)
T ss_pred             CHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence            89999999999999999999999999864

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.03  E-value=3.3e-05  Score=56.33  Aligned_cols=82  Identities=18%  Similarity=0.232  Sum_probs=61.4

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--cc
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EH   77 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--~~   77 (140)
                      ||..|++|+..|. ++.++.+++++..+..            .++.+...|+.+.+    ...+||+|+++.+++.  ++
T Consensus        48 La~~g~~V~gvD~S~~~i~~a~~~~~~~~~------------~~v~~~~~d~~~~~----~~~~fD~I~~~~~~~~~~~~  111 (197)
T PRK11207         48 LAANGFDVTAWDKNPMSIANLERIKAAENL------------DNLHTAVVDLNNLT----FDGEYDFILSTVVLMFLEAK  111 (197)
T ss_pred             HHHCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CcceEEecChhhCC----cCCCcCEEEEecchhhCCHH
Confidence            4667899999998 7899999998877643            23555555554332    1357999999999864  34


Q ss_pred             chHHHHHHHHHhcCCCeEEEE
Q 032462           78 LLEPLLQTIFALSGPKTTILL   98 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~   98 (140)
                      ..+.+++.+.++++|+|.+++
T Consensus       112 ~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207        112 TIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             HHHHHHHHHHHHcCCCcEEEE
Confidence            678899999999999998644

>PRK14968 putative methyltransferase; Provisional

Probab=98.03  E-value=0.00012  Score=52.09  Aligned_cols=109  Identities=19%  Similarity=0.218  Sum_probs=70.1

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC-----
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-----   75 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~-----   75 (140)
                      |..|++|+.+|. ++++...++|+..|...          ...+.+..-||-+..  .  ...||+|++..-.+.     
T Consensus        42 ~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~----------~~~~~~~~~d~~~~~--~--~~~~d~vi~n~p~~~~~~~~  107 (188)
T PRK14968         42 AKNGKKVVGVDINPYAVECAKCNAKLNNIR----------NNGVEVIRSDLFEPF--R--GDKFDVILFNPPYLPTEEEE  107 (188)
T ss_pred             HhhcceEEEEECCHHHHHHHHHHHHHcCCC----------CcceEEEeccccccc--c--ccCceEEEECCCcCCCCchh
Confidence            445889999998 78999999999887642          112556666665432  1  237999997544332     


Q ss_pred             ----------------ccchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecC
Q 032462           76 ----------------EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK  126 (140)
Q Consensus        76 ----------------~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~  126 (140)
                                      ....+.+++.+...++|+|.+++....-..  .+.+.+.+ +.||.+..+..
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~--~~~l~~~~~~~g~~~~~~~~  173 (188)
T PRK14968        108 EWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG--EDEVLEYLEKLGFEAEVVAE  173 (188)
T ss_pred             hhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC--HHHHHHHHHHCCCeeeeeee
Confidence                            112456777788888999987765543221  23445555 45888776544

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.99  E-value=0.00011  Score=56.79  Aligned_cols=104  Identities=15%  Similarity=0.251  Sum_probs=69.8

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      +++|+ +|+..|. +..+...++|+..|...           ..+....-+   ..  .....+||+|++. ++  ....
T Consensus       178 a~~g~~~V~avDid~~al~~a~~n~~~n~~~-----------~~~~~~~~~---~~--~~~~~~fDlVvan-~~--~~~l  238 (288)
T TIGR00406       178 LKLGAAKVVGIDIDPLAVESARKNAELNQVS-----------DRLQVKLIY---LE--QPIEGKADVIVAN-IL--AEVI  238 (288)
T ss_pred             HHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-----------cceEEEecc---cc--cccCCCceEEEEe-cC--HHHH
Confidence            46787 8999998 78999999999998742           223322211   11  1124689999873 33  2334


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEeecC
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPK  126 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~v~~  126 (140)
                      ..++..+.++++|+|.++++...+..  ...+.+.++++|.+.++..
T Consensus       239 ~~ll~~~~~~LkpgG~li~sgi~~~~--~~~v~~~~~~~f~~~~~~~  283 (288)
T TIGR00406       239 KELYPQFSRLVKPGGWLILSGILETQ--AQSVCDAYEQGFTVVEIRQ  283 (288)
T ss_pred             HHHHHHHHHHcCCCcEEEEEeCcHhH--HHHHHHHHHccCceeeEec
Confidence            56777778889999999987765544  4566777765688766543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=97.99  E-value=5.2e-05  Score=58.87  Aligned_cols=101  Identities=20%  Similarity=0.324  Sum_probs=67.3

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      |++|| +|+..|. |..+...++|+++|+..           .++.+.    . ....  ...+||+|+| -++.  ..+
T Consensus       180 ~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~-----------~~~~v~----~-~~~~--~~~~~dlvvA-NI~~--~vL  238 (295)
T PF06325_consen  180 AKLGAKKVVAIDIDPLAVEAARENAELNGVE-----------DRIEVS----L-SEDL--VEGKFDLVVA-NILA--DVL  238 (295)
T ss_dssp             HHTTBSEEEEEESSCHHHHHHHHHHHHTT-T-----------TCEEES----C-TSCT--CCS-EEEEEE-ES-H--HHH
T ss_pred             HHcCCCeEEEecCCHHHHHHHHHHHHHcCCC-----------eeEEEE----E-eccc--ccccCCEEEE-CCCH--HHH
Confidence            57899 8999999 77899999999999863           344442    1 1111  2489999985 2222  122


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEeec
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVP  125 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~v~  125 (140)
                      -.|+..+..+++|+|.++++--....  .+.+.+.+++||.+.+..
T Consensus       239 ~~l~~~~~~~l~~~G~lIlSGIl~~~--~~~v~~a~~~g~~~~~~~  282 (295)
T PF06325_consen  239 LELAPDIASLLKPGGYLILSGILEEQ--EDEVIEAYKQGFELVEER  282 (295)
T ss_dssp             HHHHHHCHHHEEEEEEEEEEEEEGGG--HHHHHHHHHTTEEEEEEE
T ss_pred             HHHHHHHHHhhCCCCEEEEccccHHH--HHHHHHHHHCCCEEEEEE
Confidence            34555566678899999888777665  356677776699876543

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.97  E-value=4e-05  Score=50.15  Aligned_cols=83  Identities=19%  Similarity=0.204  Sum_probs=61.9

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEee-cc--cCc-cc
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTD-VV--YAE-HL   78 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasD-vi--Y~~-~~   78 (140)
                      .|++|+..|. +++++.+++|+..+..           ..++.+..-|+ ..  ......+||+|+... +.  |.+ +.
T Consensus        24 ~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~i~~~~~d~-~~--~~~~~~~~D~v~~~~~~~~~~~~~~~   89 (112)
T PF12847_consen   24 PGARVVGVDISPEMLEIARERAAEEGL-----------SDRITFVQGDA-EF--DPDFLEPFDLVICSGFTLHFLLPLDE   89 (112)
T ss_dssp             TTSEEEEEESSHHHHHHHHHHHHHTTT-----------TTTEEEEESCC-HG--GTTTSSCEEEEEECSGSGGGCCHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEECcc-cc--CcccCCCCCEEEECCCccccccchhH
Confidence            6789999998 8899999999955443           47888888888 21  112356799999999 22  222 34


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEE
Q 032462           79 LEPLLQTIFALSGPKTTILLGY  100 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~  100 (140)
                      ...+++.+.+.++|+|.+++..
T Consensus        90 ~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   90 RRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCcEEEEEE
Confidence            5667888888899999998864

...

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=97.96  E-value=4e-05  Score=60.21  Aligned_cols=90  Identities=14%  Similarity=0.217  Sum_probs=66.3

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      ||+.|++|+..|. ++.+...+.+.+.+..           ..++.+..   ++.+..+.....||+|++.++++.=.-.
T Consensus       149 La~~g~~V~GID~s~~~i~~Ar~~~~~~~~-----------~~~i~~~~---~dae~l~~~~~~FD~Vi~~~vLeHv~d~  214 (322)
T PLN02396        149 LARMGATVTGVDAVDKNVKIARLHADMDPV-----------TSTIEYLC---TTAEKLADEGRKFDAVLSLEVIEHVANP  214 (322)
T ss_pred             HHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-----------ccceeEEe---cCHHHhhhccCCCCEEEEhhHHHhcCCH
Confidence            4677999999998 7899999887665432           12333332   2222222234689999999999987778


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEecC
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R~  104 (140)
                      +.+++.+.++++|+|.++++...|.
T Consensus       215 ~~~L~~l~r~LkPGG~liist~nr~  239 (322)
T PLN02396        215 AEFCKSLSALTIPNGATVLSTINRT  239 (322)
T ss_pred             HHHHHHHHHHcCCCcEEEEEECCcC
Confidence            8999999999999999999876554

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.91  E-value=7.9e-05  Score=56.29  Aligned_cols=89  Identities=21%  Similarity=0.216  Sum_probs=65.4

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      ||..|.+|+..|. ++++...++++..++.           ..++++..-+..+...  .....||+|++..+++.-.-.
T Consensus        62 la~~g~~v~~vD~s~~~l~~a~~~~~~~g~-----------~~~v~~~~~d~~~l~~--~~~~~fD~V~~~~vl~~~~~~  128 (255)
T PRK11036         62 LAELGHQVILCDLSAEMIQRAKQAAEAKGV-----------SDNMQFIHCAAQDIAQ--HLETPVDLILFHAVLEWVADP  128 (255)
T ss_pred             HHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------ccceEEEEcCHHHHhh--hcCCCCCEEEehhHHHhhCCH
Confidence            4567899999998 8899999998876543           2345555544433211  124689999999998865556


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEe
Q 032462           80 EPLLQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~  102 (140)
                      ..++..+..+++|+|.+.+....
T Consensus       129 ~~~l~~~~~~LkpgG~l~i~~~n  151 (255)
T PRK11036        129 KSVLQTLWSVLRPGGALSLMFYN  151 (255)
T ss_pred             HHHHHHHHHHcCCCeEEEEEEEC
Confidence            78889999999999999876543

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=97.90  E-value=0.00014  Score=56.45  Aligned_cols=106  Identities=21%  Similarity=0.234  Sum_probs=72.7

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      +++|| +|+.+|. |..+.-.++|+++|+..           .   .....++.....+ ...+||+|+|- +  -.+.+
T Consensus       181 ~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~-----------~---~~~~~~~~~~~~~-~~~~~DvIVAN-I--LA~vl  242 (300)
T COG2264         181 AKLGAKKVVGVDIDPQAVEAARENARLNGVE-----------L---LVQAKGFLLLEVP-ENGPFDVIVAN-I--LAEVL  242 (300)
T ss_pred             HHcCCceEEEecCCHHHHHHHHHHHHHcCCc-----------h---hhhcccccchhhc-ccCcccEEEeh-h--hHHHH
Confidence            57999 7999999 67899999999999863           1   1122333332222 23699999873 1  12223


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecCC
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKA  127 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~~  127 (140)
                      ..|..-+..+++|+|.++++--...+  .+.+.+++ +.||.+.++-..
T Consensus       243 ~~La~~~~~~lkpgg~lIlSGIl~~q--~~~V~~a~~~~gf~v~~~~~~  289 (300)
T COG2264         243 VELAPDIKRLLKPGGRLILSGILEDQ--AESVAEAYEQAGFEVVEVLER  289 (300)
T ss_pred             HHHHHHHHHHcCCCceEEEEeehHhH--HHHHHHHHHhCCCeEeEEEec
Confidence            35555566678899999998887776  46778888 679998876443

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=97.86  E-value=0.00061  Score=47.31  Aligned_cols=87  Identities=20%  Similarity=0.224  Sum_probs=72.4

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      +++|+..|. +++++.++.+++.+..            .++++..-|+.+.+..  ....||+|+...+++.-.....++
T Consensus        28 ~~~i~gvD~s~~~i~~a~~~~~~~~~------------~ni~~~~~d~~~l~~~--~~~~~D~I~~~~~l~~~~~~~~~l   93 (152)
T PF13847_consen   28 GAKIIGVDISEEMIEYAKKRAKELGL------------DNIEFIQGDIEDLPQE--LEEKFDIIISNGVLHHFPDPEKVL   93 (152)
T ss_dssp             TSEEEEEESSHHHHHHHHHHHHHTTS------------TTEEEEESBTTCGCGC--SSTTEEEEEEESTGGGTSHHHHHH
T ss_pred             CCEEEEEECcHHHHHHhhcccccccc------------cccceEEeehhccccc--cCCCeeEEEEcCchhhccCHHHHH
Confidence            679999998 8899999999988864            3789999999873321  127999999999998888888899


Q ss_pred             HHHHHhcCCCeEEEEEEEecCh
Q 032462           84 QTIFALSGPKTTILLGYEIRST  105 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~~R~~  105 (140)
                      +.+.++++++|.+++.......
T Consensus        94 ~~~~~~lk~~G~~i~~~~~~~~  115 (152)
T PF13847_consen   94 KNIIRLLKPGGILIISDPNHND  115 (152)
T ss_dssp             HHHHHHEEEEEEEEEEEEEHSH
T ss_pred             HHHHHHcCCCcEEEEEECChHH
Confidence            9999999999999988887444

...

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.86  E-value=0.00016  Score=53.64  Aligned_cols=85  Identities=13%  Similarity=0.075  Sum_probs=63.4

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      ++.|++|+.+|. +..+...+.|+..+..             .+.+...++.+...  ....+||+|+++.++..-....
T Consensus        67 ~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~~~~--~~~~~fD~Ii~~~~l~~~~~~~  131 (233)
T PRK05134         67 ARLGADVTGIDASEENIEVARLHALESGL-------------KIDYRQTTAEELAA--EHPGQFDVVTCMEMLEHVPDPA  131 (233)
T ss_pred             HHcCCeEEEEcCCHHHHHHHHHHHHHcCC-------------ceEEEecCHHHhhh--hcCCCccEEEEhhHhhccCCHH
Confidence            446789999998 7788888888876532             33455555554321  1246899999999988877778


Q ss_pred             HHHHHHHHhcCCCeEEEEEEE
Q 032462           81 PLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      .+++.+.++++|+|.++++..
T Consensus       132 ~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        132 SFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             HHHHHHHHHcCCCcEEEEEec
Confidence            899999999999999988754

>TIGR00477 tehB tellurite resistance protein TehB

Probab=97.84  E-value=0.00011  Score=53.41  Aligned_cols=82  Identities=15%  Similarity=0.181  Sum_probs=58.8

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--cc
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EH   77 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--~~   77 (140)
                      ||..|++|+..|. +.++..++++++.++.             ++.....+....+    ...+||+|+++.+++.  ..
T Consensus        48 la~~g~~V~~iD~s~~~l~~a~~~~~~~~~-------------~v~~~~~d~~~~~----~~~~fD~I~~~~~~~~~~~~  110 (195)
T TIGR00477        48 LSLAGYDVRAWDHNPASIASVLDMKARENL-------------PLRTDAYDINAAA----LNEDYDFIFSTVVFMFLQAG  110 (195)
T ss_pred             HHHCCCeEEEEECCHHHHHHHHHHHHHhCC-------------CceeEeccchhcc----ccCCCCEEEEecccccCCHH
Confidence            4667999999998 7799999988876543             1333333432211    1347999999998764  34


Q ss_pred             chHHHHHHHHHhcCCCeEEEEE
Q 032462           78 LLEPLLQTIFALSGPKTTILLG   99 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~   99 (140)
                      ..+.+++.+.++++|+|.+++.
T Consensus       111 ~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477       111 RVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             HHHHHHHHHHHHhCCCcEEEEE
Confidence            6778899999999999985543

Part of a tellurite-reducing operon tehA and tehB

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=97.79  E-value=6.1e-05  Score=57.29  Aligned_cols=93  Identities=15%  Similarity=0.185  Sum_probs=66.9

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      ||++||+|+..|. ++.++..+.-...+-..         ..+-.....++=+..+   ....+||.|++++++=.=...
T Consensus       107 LArlga~V~GID~s~~~V~vA~~h~~~dP~~---------~~~~~y~l~~~~~~~E---~~~~~fDaVvcsevleHV~dp  174 (282)
T KOG1270|consen  107 LARLGAQVTGIDASDDMVEVANEHKKMDPVL---------EGAIAYRLEYEDTDVE---GLTGKFDAVVCSEVLEHVKDP  174 (282)
T ss_pred             hHhhCCeeEeecccHHHHHHHHHhhhcCchh---------ccccceeeehhhcchh---hcccccceeeeHHHHHHHhCH
Confidence            7999999999997 77887776654443221         1111112223322222   234569999999999888888


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEecCh
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIRST  105 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R~~  105 (140)
                      +.+++.+.++++|+|..+++...|.-
T Consensus       175 ~~~l~~l~~~lkP~G~lfittinrt~  200 (282)
T KOG1270|consen  175 QEFLNCLSALLKPNGRLFITTINRTI  200 (282)
T ss_pred             HHHHHHHHHHhCCCCceEeeehhhhH
Confidence            99999999999999999999998874

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.77  E-value=0.00017  Score=62.07  Aligned_cols=118  Identities=18%  Similarity=0.112  Sum_probs=79.9

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe---------
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT---------   70 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas---------   70 (140)
                      |+.|+ +|+..|. +..+...++|++.|+..          ..++++..-|.-+..  .....+||+||.-         
T Consensus       557 a~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~----------~~~v~~i~~D~~~~l--~~~~~~fDlIilDPP~f~~~~~  624 (702)
T PRK11783        557 ALGGAKSTTTVDMSNTYLEWAERNFALNGLS----------GRQHRLIQADCLAWL--KEAREQFDLIFIDPPTFSNSKR  624 (702)
T ss_pred             HHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----------ccceEEEEccHHHHH--HHcCCCcCEEEECCCCCCCCCc
Confidence            45677 7999998 78999999999999752          134555555533211  1124579998862         


Q ss_pred             --ecccCccchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecCCCCCcccC
Q 032462           71 --DVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKESTMWG  134 (140)
Q Consensus        71 --DviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~~~l~~~~~  134 (140)
                        +..-.......|+..+..+++|+|.++++.-.+.....   .+.+ +.|+.++.+.....++++.
T Consensus       625 ~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~---~~~~~~~g~~~~~i~~~~~~~Dhp  688 (702)
T PRK11783        625 MEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD---EEGLAKLGLKAEEITAKTLPPDFA  688 (702)
T ss_pred             cchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh---HHHHHhCCCeEEEEecCCCCCCCC
Confidence              22111234567888888889999999887776654322   4444 4699999998888888774

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.77  E-value=0.00035  Score=52.79  Aligned_cols=98  Identities=18%  Similarity=0.265  Sum_probs=66.1

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      +++|+ +|+.+|. +..+...++|++.|...           ..+.+..           ...+||+|++. +.  .+.+
T Consensus       138 ~~~g~~~v~giDis~~~l~~A~~n~~~~~~~-----------~~~~~~~-----------~~~~fD~Vvan-i~--~~~~  192 (250)
T PRK00517        138 AKLGAKKVLAVDIDPQAVEAARENAELNGVE-----------LNVYLPQ-----------GDLKADVIVAN-IL--ANPL  192 (250)
T ss_pred             HHcCCCeEEEEECCHHHHHHHHHHHHHcCCC-----------ceEEEcc-----------CCCCcCEEEEc-Cc--HHHH
Confidence            45787 6999998 77999999999988641           1222110           01279999863 21  2345


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEEeecC
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK  126 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~v~~  126 (140)
                      ..++..+.++++|+|.++++...+..  .+.+.+.++ .||.+..+..
T Consensus       193 ~~l~~~~~~~LkpgG~lilsgi~~~~--~~~v~~~l~~~Gf~~~~~~~  238 (250)
T PRK00517        193 LELAPDLARLLKPGGRLILSGILEEQ--ADEVLEAYEEAGFTLDEVLE  238 (250)
T ss_pred             HHHHHHHHHhcCCCcEEEEEECcHhh--HHHHHHHHHHCCCEEEEEEE
Confidence            56777778889999999987655543  356666664 5898776543

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=97.76  E-value=0.00022  Score=54.96  Aligned_cols=82  Identities=21%  Similarity=0.303  Sum_probs=61.4

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--cc
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EH   77 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--~~   77 (140)
                      ||..|++|+..|. +..+..+++|++.+..             ++++...|-....    ...+||+|+++.+++.  ++
T Consensus       138 la~~g~~V~avD~s~~ai~~~~~~~~~~~l-------------~v~~~~~D~~~~~----~~~~fD~I~~~~vl~~l~~~  200 (287)
T PRK12335        138 LALLGFDVTAVDINQQSLENLQEIAEKENL-------------NIRTGLYDINSAS----IQEEYDFILSTVVLMFLNRE  200 (287)
T ss_pred             HHHCCCEEEEEECCHHHHHHHHHHHHHcCC-------------ceEEEEechhccc----ccCCccEEEEcchhhhCCHH
Confidence            4667999999998 7899999999877642             3445444443321    2568999999998764  35


Q ss_pred             chHHHHHHHHHhcCCCeEEEEE
Q 032462           78 LLEPLLQTIFALSGPKTTILLG   99 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~   99 (140)
                      ..+.+++.+.+.++|+|.+++.
T Consensus       201 ~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        201 RIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEE
Confidence            7888999999999999986553

>PRK14967 putative methyltransferase; Provisional

Probab=97.73  E-value=0.00093  Score=49.51  Aligned_cols=108  Identities=20%  Similarity=0.262  Sum_probs=71.1

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc--
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--   77 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~--   77 (140)
                      |+.|+ +|+..|. +..+...++|++.|+.             ++.+..-||.+.  .  ...+||+|++. .=|.+.  
T Consensus        55 a~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-------------~~~~~~~d~~~~--~--~~~~fD~Vi~n-pPy~~~~~  116 (223)
T PRK14967         55 AAAGAGSVTAVDISRRAVRSARLNALLAGV-------------DVDVRRGDWARA--V--EFRPFDVVVSN-PPYVPAPP  116 (223)
T ss_pred             HHcCCCeEEEEECCHHHHHHHHHHHHHhCC-------------eeEEEECchhhh--c--cCCCeeEEEEC-CCCCCCCc
Confidence            45676 9999998 7789999999988753             245555566432  1  13589999974 223321  


Q ss_pred             --------------------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEEeecCCCC
Q 032462           78 --------------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPKAKE  129 (140)
Q Consensus        78 --------------------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~v~~~~l  129 (140)
                                          ....++..+.++++++|.+++.+.....  ...+++.++ .+|.++......+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~  187 (223)
T PRK14967        117 DAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSG--VERTLTRLSEAGLDAEVVASQWI  187 (223)
T ss_pred             ccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccC--HHHHHHHHHHCCCCeEEEEeecc
Confidence                                1345666677788999999887665532  346677774 5887776544333

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=97.72  E-value=0.0012  Score=47.70  Aligned_cols=105  Identities=12%  Similarity=0.017  Sum_probs=71.5

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      ++|+..|. +..+..+++|++.++.            .++++..-++.+..    ...+||+|++ +.+   ...+.++.
T Consensus        67 ~~V~~iD~s~~~~~~a~~~~~~~~~------------~~i~~i~~d~~~~~----~~~~fD~I~s-~~~---~~~~~~~~  126 (181)
T TIGR00138        67 LKLTLLESNHKKVAFLREVKAELGL------------NNVEIVNGRAEDFQ----HEEQFDVITS-RAL---ASLNVLLE  126 (181)
T ss_pred             CeEEEEeCcHHHHHHHHHHHHHhCC------------CCeEEEecchhhcc----ccCCccEEEe-hhh---hCHHHHHH
Confidence            58999998 7789999999987753            24677766665431    2468998875 442   24566778


Q ss_pred             HHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecCCCCC
Q 032462           85 TIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKES  130 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~~~l~  130 (140)
                      .+.++++|+|.+++..............+.+ -.||+..+++.-.++
T Consensus       127 ~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  173 (181)
T TIGR00138       127 LTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTGP  173 (181)
T ss_pred             HHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccCCC
Confidence            8888999999998775433333233444554 358887777766554

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=97.69  E-value=0.00089  Score=49.27  Aligned_cols=105  Identities=13%  Similarity=0.081  Sum_probs=75.8

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      +++|+..|. ++.+...++|+..++.           ..++++...|..+.+ .   ..+||+|++..++..-...+.++
T Consensus        23 ~~~v~gid~s~~~~~~a~~~~~~~gl-----------~~~i~~~~~d~~~~~-~---~~~fD~I~~~~~l~~~~~~~~~l   87 (224)
T smart00828       23 HLQLHGYTISPEQAEVGRERIRALGL-----------QGRIRIFYRDSAKDP-F---PDTYDLVFGFEVIHHIKDKMDLF   87 (224)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhcCC-----------CcceEEEecccccCC-C---CCCCCEeehHHHHHhCCCHHHHH
Confidence            368999998 7788999998876543           346777777765432 1   34799999999998776788999


Q ss_pred             HHHHHhcCCCeEEEEEEEecC-------------hhHHHHHHHHH-HhcCeEEee
Q 032462           84 QTIFALSGPKTTILLGYEIRS-------------TSVHEQMLQMW-KSNFNVKLV  124 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~~R~-------------~~~~~~F~~~~-~~~f~v~~v  124 (140)
                      +.+.++++|+|.+++......             ..+...+.+.+ +.||.+...
T Consensus        88 ~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~  142 (224)
T smart00828       88 SNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEG  142 (224)
T ss_pred             HHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEe
Confidence            999999999999987654221             01134556666 469987654

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.61  E-value=0.00022  Score=44.74  Aligned_cols=79  Identities=18%  Similarity=0.196  Sum_probs=59.2

Q ss_pred             ccC-CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            2 ALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~l-Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      +.. +.+|+.+|. ++.+..++++...+.               +.+..-+..+.   +.....||+|++..+++.-+..
T Consensus        15 ~~~~~~~v~~~D~~~~~~~~~~~~~~~~~---------------~~~~~~d~~~l---~~~~~sfD~v~~~~~~~~~~~~   76 (95)
T PF08241_consen   15 AKRGGASVTGIDISEEMLEQARKRLKNEG---------------VSFRQGDAEDL---PFPDNSFDVVFSNSVLHHLEDP   76 (95)
T ss_dssp             HHTTTCEEEEEES-HHHHHHHHHHTTTST---------------EEEEESBTTSS---SS-TT-EEEEEEESHGGGSSHH
T ss_pred             HhccCCEEEEEeCCHHHHHHHHhcccccC---------------chheeehHHhC---ccccccccccccccceeeccCH
Confidence            345 679999998 777888877664332               23556665544   3336799999999999988888


Q ss_pred             HHHHHHHHHhcCCCeEEEE
Q 032462           80 EPLLQTIFALSGPKTTILL   98 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~   98 (140)
                      ..+++-+.+.++|+|.+++
T Consensus        77 ~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   77 EAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHHcCcCeEEeC
Confidence            8999999999999999875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.58  E-value=0.00052  Score=48.86  Aligned_cols=82  Identities=23%  Similarity=0.238  Sum_probs=61.1

Q ss_pred             EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc-----chH
Q 032462            7 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----LLE   80 (140)
Q Consensus         7 ~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~-----~~~   80 (140)
                      +|+++|. +..+...++|++.|...           . +++..-||-+...    ..+||+|+.-=-.+...     ...
T Consensus        57 ~v~~vDi~~~a~~~a~~n~~~n~~~-----------~-v~~~~~d~~~~~~----~~~fD~Iv~NPP~~~~~~~~~~~~~  120 (170)
T PF05175_consen   57 KVTAVDINPDALELAKRNAERNGLE-----------N-VEVVQSDLFEALP----DGKFDLIVSNPPFHAGGDDGLDLLR  120 (170)
T ss_dssp             EEEEEESBHHHHHHHHHHHHHTTCT-----------T-EEEEESSTTTTCC----TTCEEEEEE---SBTTSHCHHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHhcCcc-----------c-ccccccccccccc----ccceeEEEEccchhcccccchhhHH
Confidence            6999997 88999999999999852           2 7888888865432    57999999875544432     467


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEecC
Q 032462           81 PLLQTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~R~  104 (140)
                      .++....+.|+|+|.+++.+..-.
T Consensus       121 ~~i~~a~~~Lk~~G~l~lv~~~~~  144 (170)
T PF05175_consen  121 DFIEQARRYLKPGGRLFLVINSHL  144 (170)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEETTS
T ss_pred             HHHHHHHHhccCCCEEEEEeecCC
Confidence            777777888999999988776433

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=97.56  E-value=0.0013  Score=53.14  Aligned_cols=126  Identities=20%  Similarity=0.225  Sum_probs=73.4

Q ss_pred             cCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCc-cccccCCCccEEEEeecccCccc-
Q 032462            3 LLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAVAPPFDYIIGTDVVYAEHL-   78 (140)
Q Consensus         3 ~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~-~~~~~~~~~D~IlasDviY~~~~-   78 (140)
                      +.|+ +|+..|. +..+..+++|+++|+..          ..++++..-|.-+.. .......+||+|+ +|-=|.... 
T Consensus       240 ~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~----------~~~v~~i~~D~~~~l~~~~~~~~~fDlVi-lDPP~f~~~k  308 (396)
T PRK15128        240 MGGCSQVVSVDTSQEALDIARQNVELNKLD----------LSKAEFVRDDVFKLLRTYRDRGEKFDVIV-MDPPKFVENK  308 (396)
T ss_pred             hCCCCEEEEEECCHHHHHHHHHHHHHcCCC----------CCcEEEEEccHHHHHHHHHhcCCCCCEEE-ECCCCCCCCh
Confidence            3466 8999998 78999999999999752          124555544443221 0111235799998 787775432 


Q ss_pred             ---------hHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-----HhcCeEEeecCC----CCCcccCCCCCCC
Q 032462           79 ---------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-----KSNFNVKLVPKA----KESTMWGNPLGLY  140 (140)
Q Consensus        79 ---------~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-----~~~f~v~~v~~~----~l~~~~~~~~~~~  140 (140)
                               ...|+....++++|+|.++.+.....-+ .+.|.+.+     +.+-.++.+...    +++-....+++.|
T Consensus       309 ~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~-~~~f~~~v~~aa~~~~~~~~~l~~~~~~~DhP~~~~~pe~~Y  387 (396)
T PRK15128        309 SQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMT-SDLFQKIIADAAIDAGRDVQFIEQFRQAADHPVIATYPEGLY  387 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCC-HHHHHHHHHHHHHHcCCeEEEEEEcCCCCCCCCCCCCCCcCC
Confidence                     3334445566788999988765543332 34454443     234455544333    3333344555554

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=97.47  E-value=0.0027  Score=45.61  Aligned_cols=93  Identities=16%  Similarity=0.157  Sum_probs=61.3

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      ++|+..|. ++.+..+++|++.|..            .++++..-+   ...  ....+||+|+.+-.   ......+++
T Consensus        56 ~~v~~vD~s~~~~~~a~~n~~~~~~------------~~i~~~~~d---~~~--~~~~~~D~v~~~~~---~~~~~~~l~  115 (187)
T PRK08287         56 LQVTAIERNPDALRLIKENRQRFGC------------GNIDIIPGE---API--ELPGKADAIFIGGS---GGNLTAIID  115 (187)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHhCC------------CCeEEEecC---chh--hcCcCCCEEEECCC---ccCHHHHHH
Confidence            59999998 8899999999988753            234433322   211  12357999987533   234567888


Q ss_pred             HHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCe
Q 032462           85 TIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFN  120 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~  120 (140)
                      .+...++|+|.+++....-.  ....+.+.+ +.||.
T Consensus       116 ~~~~~Lk~gG~lv~~~~~~~--~~~~~~~~l~~~g~~  150 (187)
T PRK08287        116 WSLAHLHPGGRLVLTFILLE--NLHSALAHLEKCGVS  150 (187)
T ss_pred             HHHHhcCCCeEEEEEEecHh--hHHHHHHHHHHCCCC
Confidence            88888999999877654322  245666666 45775

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=97.44  E-value=0.00083  Score=49.10  Aligned_cols=81  Identities=23%  Similarity=0.274  Sum_probs=58.6

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--cc
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EH   77 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--~~   77 (140)
                      ||++|.+|++-|. +..++.+++-++.+..             .+++...|..+..    ....||+|+++=++..  ++
T Consensus        48 LA~~G~~VtAvD~s~~al~~l~~~a~~~~l-------------~i~~~~~Dl~~~~----~~~~yD~I~st~v~~fL~~~  110 (192)
T PF03848_consen   48 LASQGFDVTAVDISPVALEKLQRLAEEEGL-------------DIRTRVADLNDFD----FPEEYDFIVSTVVFMFLQRE  110 (192)
T ss_dssp             HHHTT-EEEEEESSHHHHHHHHHHHHHTT--------------TEEEEE-BGCCBS-----TTTEEEEEEESSGGGS-GG
T ss_pred             HHHCCCeEEEEECCHHHHHHHHHHHhhcCc-------------eeEEEEecchhcc----ccCCcCEEEEEEEeccCCHH
Confidence            6889999999998 6678888766555432             3777777776543    2458999987644433  57


Q ss_pred             chHHHHHHHHHhcCCCeEEEE
Q 032462           78 LLEPLLQTIFALSGPKTTILL   98 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~   98 (140)
                      .++.+++-|+..++|+|..++
T Consensus       111 ~~~~i~~~m~~~~~pGG~~li  131 (192)
T PF03848_consen  111 LRPQIIENMKAATKPGGYNLI  131 (192)
T ss_dssp             GHHHHHHHHHHTEEEEEEEEE
T ss_pred             HHHHHHHHHHhhcCCcEEEEE
Confidence            889999999999999998765

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=97.44  E-value=0.0028  Score=46.64  Aligned_cols=81  Identities=12%  Similarity=0.056  Sum_probs=61.5

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      ++|+.+|. +..+...++|+..+..           ..++.+...+..+..   .....||+|+.+-++..-.....+++
T Consensus        77 ~~v~~~D~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~---~~~~~~D~I~~~~~l~~~~~~~~~l~  142 (239)
T PRK00216         77 GEVVGLDFSEGMLAVGREKLRDLGL-----------SGNVEFVQGDAEALP---FPDNSFDAVTIAFGLRNVPDIDKALR  142 (239)
T ss_pred             CeEEEEeCCHHHHHHHHHhhccccc-----------ccCeEEEecccccCC---CCCCCccEEEEecccccCCCHHHHHH
Confidence            68999998 7788999988865432           245666666665432   22467999999888877777888999


Q ss_pred             HHHHhcCCCeEEEEEE
Q 032462           85 TIFALSGPKTTILLGY  100 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~  100 (140)
                      .+..+++|+|.+++..
T Consensus       143 ~~~~~L~~gG~li~~~  158 (239)
T PRK00216        143 EMYRVLKPGGRLVILE  158 (239)
T ss_pred             HHHHhccCCcEEEEEE
Confidence            9999999999887653

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.41  E-value=0.00078  Score=49.36  Aligned_cols=105  Identities=20%  Similarity=0.230  Sum_probs=64.2

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      |...-+++++|. +..+...++-+..              .++|++...+=-+..    ...+||+|+.|.+.|.=+-.+
T Consensus        62 A~rCd~LlavDis~~Al~~Ar~Rl~~--------------~~~V~~~~~dvp~~~----P~~~FDLIV~SEVlYYL~~~~  123 (201)
T PF05401_consen   62 APRCDRLLAVDISPRALARARERLAG--------------LPHVEWIQADVPEFW----PEGRFDLIVLSEVLYYLDDAE  123 (201)
T ss_dssp             GGGEEEEEEEES-HHHHHHHHHHTTT---------------SSEEEEES-TTT-------SS-EEEEEEES-GGGSSSHH
T ss_pred             HHhhCceEEEeCCHHHHHHHHHhcCC--------------CCCeEEEECcCCCCC----CCCCeeEEEEehHhHcCCCHH
Confidence            334348999998 7788888765531              256777766654331    257999999999999965444


Q ss_pred             ---HHHHHHHHhcCCCeEEEEEEEecChh--------HHHHHHHHHHhcC-eEEeec
Q 032462           81 ---PLLQTIFALSGPKTTILLGYEIRSTS--------VHEQMLQMWKSNF-NVKLVP  125 (140)
Q Consensus        81 ---~L~~tl~~ll~~~~~~~~~~~~R~~~--------~~~~F~~~~~~~f-~v~~v~  125 (140)
                         .+++.+...+.|+|.+++++- |...        -.+...+.+++.| +|+++.
T Consensus       124 ~L~~~l~~l~~~L~pgG~LV~g~~-rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~  179 (201)
T PF05401_consen  124 DLRAALDRLVAALAPGGHLVFGHA-RDANCRRWGHAAGAETVLEMLQEHLTEVERVE  179 (201)
T ss_dssp             HHHHHHHHHHHTEEEEEEEEEEEE--HHHHHHTT-S--HHHHHHHHHHHSEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEEe-cCCcccccCcccchHHHHHHHHHHhhheeEEE
Confidence               455555566789999999886 4421        1234445555444 466653

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.39  E-value=0.0046  Score=44.95  Aligned_cols=100  Identities=16%  Similarity=0.074  Sum_probs=69.4

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL   82 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L   82 (140)
                      .+++|+..|. ++.+..+++|++.|..            .++++..-+-.+.   .. ..+||+|++.- +   ...+.+
T Consensus        68 ~~~~V~giD~s~~~l~~A~~~~~~~~l------------~~i~~~~~d~~~~---~~-~~~fDlV~~~~-~---~~~~~~  127 (187)
T PRK00107         68 PELKVTLVDSLGKKIAFLREVAAELGL------------KNVTVVHGRAEEF---GQ-EEKFDVVTSRA-V---ASLSDL  127 (187)
T ss_pred             CCCeEEEEeCcHHHHHHHHHHHHHcCC------------CCEEEEeccHhhC---CC-CCCccEEEEcc-c---cCHHHH
Confidence            3579999998 7899999999999864            2256655554432   12 46899999753 1   346778


Q ss_pred             HHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEEeecC
Q 032462           83 LQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK  126 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~v~~  126 (140)
                      ++.+.++++|+|.+++......   ...+.+..+ .|+.++.+..
T Consensus       128 l~~~~~~LkpGG~lv~~~~~~~---~~~l~~~~~~~~~~~~~~~~  169 (187)
T PRK00107        128 VELCLPLLKPGGRFLALKGRDP---EEEIAELPKALGGKVEEVIE  169 (187)
T ss_pred             HHHHHHhcCCCeEEEEEeCCCh---HHHHHHHHHhcCceEeeeEE
Confidence            8888999999999987755432   345555443 4888665543

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=97.33  E-value=0.00029  Score=54.50  Aligned_cols=102  Identities=21%  Similarity=0.135  Sum_probs=62.0

Q ss_pred             cCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc----
Q 032462            3 LLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----   76 (140)
Q Consensus         3 ~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~----   76 (140)
                      +-|| +|+.-|. ...++..++|+++|+..          ...+++..-|.-+.-..-....+||+||.==--|-+    
T Consensus       143 ~gGA~~v~~VD~S~~al~~a~~N~~lNg~~----------~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~  212 (286)
T PF10672_consen  143 AGGAKEVVSVDSSKRALEWAKENAALNGLD----------LDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFD  212 (286)
T ss_dssp             HTTESEEEEEES-HHHHHHHHHHHHHTT-C----------CTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCE
T ss_pred             HCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----------ccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHH
Confidence            4577 8999998 67999999999999853          245555554443211000124589998863222222    


Q ss_pred             --cchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH
Q 032462           77 --HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW  115 (140)
Q Consensus        77 --~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~  115 (140)
                        .....|+...-++++|+|.++++.-.+.-+ .+.|.+.+
T Consensus       213 ~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~-~~~l~~~~  252 (286)
T PF10672_consen  213 LERDYKKLLRRAMKLLKPGGLLLTCSCSHHIS-PDFLLEAV  252 (286)
T ss_dssp             HHHHHHHHHHHHHHTEEEEEEEEEEE--TTS--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEcCCcccC-HHHHHHHH
Confidence              234567777778889999988777766553 45566666

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.33  E-value=0.0012  Score=48.50  Aligned_cols=86  Identities=17%  Similarity=0.117  Sum_probs=62.2

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      ++.|++|+.+|. +.++...++|+..+..            .++.+...+..+...  ....+||+|+++.++..-....
T Consensus        64 ~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~~~--~~~~~~D~i~~~~~l~~~~~~~  129 (224)
T TIGR01983        64 ARLGANVTGIDASEENIEVAKLHAKKDPL------------LKIEYRCTSVEDLAE--KGAKSFDVVTCMEVLEHVPDPQ  129 (224)
T ss_pred             HhcCCeEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEeCCHHHhhc--CCCCCccEEEehhHHHhCCCHH
Confidence            456778999998 7788999988876542            123444333332211  1136899999999998887788


Q ss_pred             HHHHHHHHhcCCCeEEEEEEE
Q 032462           81 PLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      .+++.+.+.++++|.++++..
T Consensus       130 ~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       130 AFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             HHHHHHHHhcCCCcEEEEEec
Confidence            888999999999999887654

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.24  E-value=0.00019  Score=46.13  Aligned_cols=78  Identities=15%  Similarity=0.197  Sum_probs=44.3

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccccc-CCCccEEEEeecccCccchHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV-APPFDYIIGTDVVYAEHLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~-~~~~D~IlasDviY~~~~~~~L   82 (140)
                      +++++.+|. +.++...++.+......              ....+.+...+..... ..+||+|+++.++..-+....+
T Consensus        20 ~~~~~~~D~s~~~l~~a~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~~~~~~   85 (99)
T PF08242_consen   20 DARYTGVDISPSMLERARERLAELGND--------------NFERLRFDVLDLFDYDPPESFDLVVASNVLHHLEDIEAV   85 (99)
T ss_dssp             EEEEEEEESSSSTTSTTCCCHHHCT-----------------EEEEE--SSS---CCC----SEEEEE-TTS--S-HHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHhhhcCCc--------------ceeEEEeecCChhhcccccccceehhhhhHhhhhhHHHH
Confidence            458999998 77887666666655431              2233344433322111 2599999999999999888899


Q ss_pred             HHHHHHhcCCCeEE
Q 032462           83 LQTIFALSGPKTTI   96 (140)
Q Consensus        83 ~~tl~~ll~~~~~~   96 (140)
                      ++.+.++++|+|.+
T Consensus        86 l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   86 LRNIYRLLKPGGIL   99 (99)
T ss_dssp             HHHHTTT-TSS-EE
T ss_pred             HHHHHHHcCCCCCC
Confidence            99999999999874

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=97.22  E-value=0.0048  Score=49.80  Aligned_cols=122  Identities=19%  Similarity=0.164  Sum_probs=77.3

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc---
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---   76 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~---   76 (140)
                      |+-|| +||--|. ...|+..++|+++|+....       ...-+..-.+.|-+.  ......+||+||.==--|-.   
T Consensus       236 a~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~-------~~~~i~~Dvf~~l~~--~~~~g~~fDlIilDPPsF~r~k~  306 (393)
T COG1092         236 ALGGASEVTSVDLSKRALEWARENAELNGLDGD-------RHRFIVGDVFKWLRK--AERRGEKFDLIILDPPSFARSKK  306 (393)
T ss_pred             HhcCCCceEEEeccHHHHHHHHHHHHhcCCCcc-------ceeeehhhHHHHHHH--HHhcCCcccEEEECCcccccCcc
Confidence            45588 9999998 6699999999999986321       001122222222211  11235699999863222221   


Q ss_pred             ------cchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-----HhcCeEEeecCCCCCccc
Q 032462           77 ------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-----KSNFNVKLVPKAKESTMW  133 (140)
Q Consensus        77 ------~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-----~~~f~v~~v~~~~l~~~~  133 (140)
                            ..+..|+....++++|+|.++++.-.+.-. .+.|.+.+     ..+..++.+.....++++
T Consensus       307 ~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~-~~~f~~~i~~a~~~~~~~~~~~~~~~~~~D~  373 (393)
T COG1092         307 QEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS-SDLFLEIIARAAAAAGRRAQEIEGEGQPPDH  373 (393)
T ss_pred             cchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC-HHHHHHHHHHHHHhcCCcEEEeeccCCCCCc
Confidence                  235667777778889999999887777654 34555543     235677777777777666

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=97.21  E-value=0.0095  Score=45.25  Aligned_cols=79  Identities=16%  Similarity=0.115  Sum_probs=56.7

Q ss_pred             EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHHH
Q 032462            7 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQT   85 (140)
Q Consensus         7 ~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~t   85 (140)
                      +|+..|. ++.++..++|++.+..            .++.+..-++.+.   +.....||+|+..-++......+.+++.
T Consensus       104 ~v~gvD~s~~~l~~A~~~~~~~g~------------~~v~~~~~d~~~l---~~~~~~fD~Vi~~~v~~~~~d~~~~l~~  168 (272)
T PRK11873        104 KVIGVDMTPEMLAKARANARKAGY------------TNVEFRLGEIEAL---PVADNSVDVIISNCVINLSPDKERVFKE  168 (272)
T ss_pred             EEEEECCCHHHHHHHHHHHHHcCC------------CCEEEEEcchhhC---CCCCCceeEEEEcCcccCCCCHHHHHHH
Confidence            7999998 8899999999876543            2444444444322   2224589999977666555556778888


Q ss_pred             HHHhcCCCeEEEEEE
Q 032462           86 IFALSGPKTTILLGY  100 (140)
Q Consensus        86 l~~ll~~~~~~~~~~  100 (140)
                      +.++++|+|.+++..
T Consensus       169 ~~r~LkpGG~l~i~~  183 (272)
T PRK11873        169 AFRVLKPGGRFAISD  183 (272)
T ss_pred             HHHHcCCCcEEEEEE
Confidence            999999999998753

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=97.20  E-value=0.00047  Score=47.58  Aligned_cols=44  Identities=25%  Similarity=0.259  Sum_probs=40.8

Q ss_pred             CCCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEEEEecC
Q 032462           61 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        61 ~~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~R~  104 (140)
                      ...||+|+++++++.-.....+++.|.++++|+|.++++...+.
T Consensus        76 ~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~  119 (161)
T PF13489_consen   76 DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD  119 (161)
T ss_dssp             SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred             ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence            57999999999999988899999999999999999999999875

...

>PLN02244 tocopherol O-methyltransferase

Probab=97.18  E-value=0.0034  Score=49.60  Aligned_cols=83  Identities=12%  Similarity=-0.009  Sum_probs=62.4

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL   82 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L   82 (140)
                      .|++|+..|. +..+...+++++.++.           ..++++..-|..+.   +.....||+|++.+++..-.....+
T Consensus       140 ~g~~v~gvD~s~~~i~~a~~~~~~~g~-----------~~~v~~~~~D~~~~---~~~~~~FD~V~s~~~~~h~~d~~~~  205 (340)
T PLN02244        140 YGANVKGITLSPVQAARANALAAAQGL-----------SDKVSFQVADALNQ---PFEDGQFDLVWSMESGEHMPDKRKF  205 (340)
T ss_pred             cCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEcCcccC---CCCCCCccEEEECCchhccCCHHHH
Confidence            4789999998 7788888888877653           24566666555432   2235689999999988765556778


Q ss_pred             HHHHHHhcCCCeEEEEEE
Q 032462           83 LQTIFALSGPKTTILLGY  100 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~  100 (140)
                      ++.+.++++|+|.++++.
T Consensus       206 l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        206 VQELARVAAPGGRIIIVT  223 (340)
T ss_pred             HHHHHHHcCCCcEEEEEE
Confidence            888899999999988754

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.11  E-value=0.0058  Score=37.85  Aligned_cols=81  Identities=19%  Similarity=0.168  Sum_probs=60.2

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC-ccchHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-EHLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~-~~~~~~L   82 (140)
                      +.+++..|. +..+..++++...+.            ...+++...++.+...  ....++|+|++..+.+. ......+
T Consensus        21 ~~~~~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~--~~~~~~d~i~~~~~~~~~~~~~~~~   86 (107)
T cd02440          21 GARVTGVDISPVALELARKAAAALL------------ADNVEVLKGDAEELPP--EADESFDVIISDPPLHHLVEDLARF   86 (107)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHhccc------------ccceEEEEcChhhhcc--ccCCceEEEEEccceeehhhHHHHH
Confidence            458999998 667777776333322            2456667777765532  13568999999999888 8888999


Q ss_pred             HHHHHHhcCCCeEEEEE
Q 032462           83 LQTIFALSGPKTTILLG   99 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~   99 (140)
                      ++.+...++++|.+++.
T Consensus        87 l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          87 LEEARRLLKPGGVLVLT  103 (107)
T ss_pred             HHHHHHHcCCCCEEEEE
Confidence            99999999999998876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.10  E-value=0.024  Score=41.13  Aligned_cols=100  Identities=16%  Similarity=0.202  Sum_probs=63.4

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      .+|+..|. ++.++.+++|+..|+..           .++.+..-+..+.  .+.....||.|+..=   .......+++
T Consensus        66 ~~v~avD~~~~~~~~a~~n~~~~g~~-----------~~v~~~~~d~~~~--l~~~~~~~D~V~~~~---~~~~~~~~l~  129 (198)
T PRK00377         66 GKVYAVDKDEKAINLTRRNAEKFGVL-----------NNIVLIKGEAPEI--LFTINEKFDRIFIGG---GSEKLKEIIS  129 (198)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHhCCC-----------CCeEEEEechhhh--HhhcCCCCCEEEECC---CcccHHHHHH
Confidence            58999998 88999999999987631           3445444333221  122235799988621   1234567788


Q ss_pred             HHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEe
Q 032462           85 TIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKL  123 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~  123 (140)
                      .+..+++|+|.+++. ..+- +....-.+.+ +.||.++.
T Consensus       130 ~~~~~LkpgG~lv~~-~~~~-~~~~~~~~~l~~~g~~~~~  167 (198)
T PRK00377        130 ASWEIIKKGGRIVID-AILL-ETVNNALSALENIGFNLEI  167 (198)
T ss_pred             HHHHHcCCCcEEEEE-eecH-HHHHHHHHHHHHcCCCeEE
Confidence            888889999998763 3332 3345556666 35776443

>TIGR00536 hemK_fam HemK family putative methylases

Probab=97.03  E-value=0.012  Score=45.28  Aligned_cols=86  Identities=14%  Similarity=0.152  Sum_probs=59.5

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe-------------
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT-------------   70 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas-------------   70 (140)
                      +++|+.+|. ++.+...++|++.|+.           ..++.+..-||-+..  +  ..+||+|++-             
T Consensus       138 ~~~v~avDis~~al~~a~~n~~~~~~-----------~~~v~~~~~d~~~~~--~--~~~fDlIvsNPPyi~~~~~~~~~  202 (284)
T TIGR00536       138 NAEVIAVDISPDALAVAEENAEKNQL-----------EHRVEFIQSNLFEPL--A--GQKIDIIVSNPPYIDEEDLADLP  202 (284)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhccC--c--CCCccEEEECCCCCCcchhhcCC
Confidence            469999998 8899999999998864           235777777876532  1  2379998873             


Q ss_pred             -ecccCcc-----------chHHHHHHHHHhcCCCeEEEEEEEecCh
Q 032462           71 -DVVYAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRST  105 (140)
Q Consensus        71 -DviY~~~-----------~~~~L~~tl~~ll~~~~~~~~~~~~R~~  105 (140)
                       ...|.+.           ....++.....+++|+|.+++-......
T Consensus       203 ~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~  249 (284)
T TIGR00536       203 NVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ  249 (284)
T ss_pred             cccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH
Confidence             1224332           3455677777788999988776665443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.01  E-value=0.0092  Score=46.82  Aligned_cols=85  Identities=13%  Similarity=0.150  Sum_probs=52.9

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--c
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--H   77 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~   77 (140)
                      |++.|++|+..|. +.++...++|+.......       .....+++...|+.+.      ...||+|++.|++..-  +
T Consensus       162 la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~-------~~~~~~~f~~~Dl~~l------~~~fD~Vv~~~vL~H~p~~  228 (315)
T PLN02585        162 LALEGAIVSASDISAAMVAEAERRAKEALAAL-------PPEVLPKFEANDLESL------SGKYDTVTCLDVLIHYPQD  228 (315)
T ss_pred             HHHCCCEEEEEECCHHHHHHHHHHHHhccccc-------ccccceEEEEcchhhc------CCCcCEEEEcCEEEecCHH
Confidence            3567899999998 789999999887543210       0123455665565321      4689999999998532  2


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEE
Q 032462           78 LLEPLLQTIFALSGPKTTILLGY  100 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~  100 (140)
                      ....+++.+..+. + +.++++.
T Consensus       229 ~~~~ll~~l~~l~-~-g~liIs~  249 (315)
T PLN02585        229 KADGMIAHLASLA-E-KRLIISF  249 (315)
T ss_pred             HHHHHHHHHHhhc-C-CEEEEEe
Confidence            3344555555443 3 4445554

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=96.95  E-value=0.018  Score=37.81  Aligned_cols=79  Identities=24%  Similarity=0.265  Sum_probs=53.3

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      +.+|+.+|. +..++.+++|++.+..            .++.+..-+....  .+....+||+|+..-.   ......++
T Consensus        43 ~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~~~~~~--~~~~~~~~D~v~~~~~---~~~~~~~l  105 (124)
T TIGR02469        43 NGRVYAIERNPEALRLIERNARRFGV------------SNIVIVEGDAPEA--LEDSLPEPDRVFIGGS---GGLLQEIL  105 (124)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHHhCC------------CceEEEecccccc--ChhhcCCCCEEEECCc---chhHHHHH
Confidence            358999998 7799999999988753            2334333332211  1112358999987532   34456889


Q ss_pred             HHHHHhcCCCeEEEEEE
Q 032462           84 QTIFALSGPKTTILLGY  100 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~  100 (140)
                      +.+.++++|+|.+++..
T Consensus       106 ~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469       106 EAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             HHHHHHcCCCCEEEEEe
Confidence            99999999999987753

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=96.91  E-value=0.02  Score=42.36  Aligned_cols=125  Identities=13%  Similarity=0.134  Sum_probs=70.2

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhccccc-CCC--CCCCCCceEEEEeecCCCccccccCCCccEEEEeecc--c
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQ-MNP--GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV--Y   74 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~-~~~--~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDvi--Y   74 (140)
                      ||..|.+|+..|. +..+..+..   .|+..... ...  .......|++..-|-.+.+.  ....+||.|+-+-++  .
T Consensus        52 LA~~G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~--~~~~~fD~i~D~~~~~~l  126 (213)
T TIGR03840        52 LAEQGHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA--ADLGPVDAVYDRAALIAL  126 (213)
T ss_pred             HHhCCCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeeecCceEEEEccCCCCCc--ccCCCcCEEEechhhccC
Confidence            5789999999998 767775422   11111000 000  00012345555544443321  113468888876543  2


Q ss_pred             CccchHHHHHHHHHhcCCCeE-EEEEEEecC-----h---hHHHHHHHHHHhcCeEEeecCCCCC
Q 032462           75 AEHLLEPLLQTIFALSGPKTT-ILLGYEIRS-----T---SVHEQMLQMWKSNFNVKLVPKAKES  130 (140)
Q Consensus        75 ~~~~~~~L~~tl~~ll~~~~~-~~~~~~~R~-----~---~~~~~F~~~~~~~f~v~~v~~~~l~  130 (140)
                      .++..+..++.|.++++|+|. +++++....     +   -+.....+.++.+|.++.+.....+
T Consensus       127 ~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~~~~i~~~~~~~~~  191 (213)
T TIGR03840       127 PEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYGGHYEIELLESRDVL  191 (213)
T ss_pred             CHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcCCceEEEEeecccc
Confidence            345677789999999999996 455554311     1   0123344444667888888776665

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=96.91  E-value=0.01  Score=48.65  Aligned_cols=84  Identities=15%  Similarity=0.190  Sum_probs=65.0

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL   82 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L   82 (140)
                      .|++|+..|. ++.+...++|...             ...++.+...|+.+.+ .  ...+||+|++.++++.-...+.+
T Consensus       288 ~~~~v~gvDiS~~~l~~A~~~~~~-------------~~~~v~~~~~d~~~~~-~--~~~~fD~I~s~~~l~h~~d~~~~  351 (475)
T PLN02336        288 FDVHVVGIDLSVNMISFALERAIG-------------RKCSVEFEVADCTKKT-Y--PDNSFDVIYSRDTILHIQDKPAL  351 (475)
T ss_pred             cCCEEEEEECCHHHHHHHHHHhhc-------------CCCceEEEEcCcccCC-C--CCCCEEEEEECCcccccCCHHHH
Confidence            4789999998 7788888877641             1246777777877543 1  13589999999999887777889


Q ss_pred             HHHHHHhcCCCeEEEEEEEec
Q 032462           83 LQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      ++-+.++++|+|.+++....+
T Consensus       352 l~~~~r~LkpgG~l~i~~~~~  372 (475)
T PLN02336        352 FRSFFKWLKPGGKVLISDYCR  372 (475)
T ss_pred             HHHHHHHcCCCeEEEEEEecc
Confidence            999999999999998875443

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=96.91  E-value=0.012  Score=48.11  Aligned_cols=105  Identities=13%  Similarity=0.162  Sum_probs=68.0

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeecccCccc
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHL   78 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~~~D~IlasDviY~~~~   78 (140)
                      ||..+++|+..|. ++.+...++|++.|+.            .++++..-||.+... .+.....||+|+. |-=|..  
T Consensus       315 la~~~~~V~gvD~s~~al~~A~~n~~~~~~------------~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~-dPPr~g--  379 (443)
T PRK13168        315 LARQAAEVVGVEGVEAMVERARENARRNGL------------DNVTFYHANLEEDFTDQPWALGGFDKVLL-DPPRAG--  379 (443)
T ss_pred             HHHhCCEEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEEeChHHhhhhhhhhcCCCCEEEE-CcCCcC--
Confidence            3556779999998 8899999999998864            347777777754311 1112356998864 554443  


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEee
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLV  124 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v  124 (140)
                      ....+..|..+ .+++.+|+++...   +..+=+..+ +.||.+++|
T Consensus       380 ~~~~~~~l~~~-~~~~ivyvSCnp~---tlaRDl~~L~~~gY~l~~i  422 (443)
T PRK13168        380 AAEVMQALAKL-GPKRIVYVSCNPA---TLARDAGVLVEAGYRLKRA  422 (443)
T ss_pred             hHHHHHHHHhc-CCCeEEEEEeChH---HhhccHHHHhhCCcEEEEE
Confidence            23444555553 6889999998543   332223333 568998876

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=96.89  E-value=0.0079  Score=43.98  Aligned_cols=103  Identities=12%  Similarity=-0.044  Sum_probs=69.4

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeec-CCCccccccCCCccEEEEeecc-cCc-----
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW-GNEDHIKAVAPPFDYIIGTDVV-YAE-----   76 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdW-g~~~~~~~~~~~~D~IlasDvi-Y~~-----   76 (140)
                      +.+|+..|. ++.+..+++|++.|..            .++++..-++ ..-+. ......||.|+..-+. |..     
T Consensus        64 ~~~v~gVD~s~~~i~~a~~~~~~~~~------------~~v~~~~~d~~~~l~~-~~~~~~~D~V~~~~~~p~~~~~~~~  130 (202)
T PRK00121         64 DINFIGIEVHEPGVGKALKKIEEEGL------------TNLRLLCGDAVEVLLD-MFPDGSLDRIYLNFPDPWPKKRHHK  130 (202)
T ss_pred             CccEEEEEechHHHHHHHHHHHHcCC------------CCEEEEecCHHHHHHH-HcCccccceEEEECCCCCCCccccc
Confidence            358999998 8899999999988753            3466766666 32210 0124579999865221 111     


Q ss_pred             --cchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEE
Q 032462           77 --HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVK  122 (140)
Q Consensus        77 --~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~  122 (140)
                        ...+.+++.+.++++|+|.++++...+..  ....++.+ +.|+.++
T Consensus       131 ~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~--~~~~~~~~~~~g~~~~  177 (202)
T PRK00121        131 RRLVQPEFLALYARKLKPGGEIHFATDWEGY--AEYMLEVLSAEGGFLV  177 (202)
T ss_pred             cccCCHHHHHHHHHHcCCCCEEEEEcCCHHH--HHHHHHHHHhCccccc
Confidence              02477899999999999999998765543  45566667 4577665

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=96.87  E-value=0.022  Score=43.88  Aligned_cols=100  Identities=13%  Similarity=0.147  Sum_probs=65.2

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe-------------
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT-------------   70 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas-------------   70 (140)
                      +++|+.+|. +..+...++|++.|+.           ..++.+..-|+.+.  .+  ..+||+|++-             
T Consensus       145 ~~~v~avDis~~al~~A~~n~~~~~~-----------~~~i~~~~~D~~~~--~~--~~~fD~Iv~NPPy~~~~~~~~l~  209 (284)
T TIGR03533       145 EAEVDAVDISPDALAVAEINIERHGL-----------EDRVTLIQSDLFAA--LP--GRKYDLIVSNPPYVDAEDMADLP  209 (284)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhhc--cC--CCCccEEEECCCCCCccchhhCC
Confidence            569999998 8899999999998864           24567777676533  11  3479999963             


Q ss_pred             -ecccCcc-----------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEEe
Q 032462           71 -DVVYAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKL  123 (140)
Q Consensus        71 -DviY~~~-----------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~  123 (140)
                       ++-|++.           ....++..+.++++|+|.+++-... ..   +.+.+.+. .+|.+..
T Consensus       210 ~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-~~---~~v~~~~~~~~~~~~~  271 (284)
T TIGR03533       210 AEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-SM---EALEEAYPDVPFTWLE  271 (284)
T ss_pred             HhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-CH---HHHHHHHHhCCCceee
Confidence             2223332           2356677777888999988765443 21   24444453 4776643

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=96.86  E-value=0.0064  Score=44.66  Aligned_cols=86  Identities=14%  Similarity=0.110  Sum_probs=62.9

Q ss_pred             CCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHH
Q 032462            4 LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEP   81 (140)
Q Consensus         4 lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~   81 (140)
                      .|+ +|+.-|. ++.+..+++|++.|+.            .++++..-|+.+..  +....+||+|+ +|-=|.....+.
T Consensus        74 r~a~~V~~vE~~~~a~~~a~~Nl~~~~~------------~~v~~~~~D~~~~l--~~~~~~fDlV~-~DPPy~~g~~~~  138 (199)
T PRK10909         74 RYAAGATLLEMDRAVAQQLIKNLATLKA------------GNARVVNTNALSFL--AQPGTPHNVVF-VDPPFRKGLLEE  138 (199)
T ss_pred             cCCCEEEEEECCHHHHHHHHHHHHHhCC------------CcEEEEEchHHHHH--hhcCCCceEEE-ECCCCCCChHHH
Confidence            354 9999997 8899999999999863            24566555553321  11234699886 788898888888


Q ss_pred             HHHHHHHh--cCCCeEEEEEEEecC
Q 032462           82 LLQTIFAL--SGPKTTILLGYEIRS  104 (140)
Q Consensus        82 L~~tl~~l--l~~~~~~~~~~~~R~  104 (140)
                      ++..|...  +.+++.+|+.+..+.
T Consensus       139 ~l~~l~~~~~l~~~~iv~ve~~~~~  163 (199)
T PRK10909        139 TINLLEDNGWLADEALIYVESEVEN  163 (199)
T ss_pred             HHHHHHHCCCcCCCcEEEEEecCCC
Confidence            98988773  688999999877653

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=96.85  E-value=0.032  Score=42.25  Aligned_cols=105  Identities=12%  Similarity=0.138  Sum_probs=67.1

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc------
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH------   77 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~------   77 (140)
                      |++|+..|. +..+...++|+..|+.               ++..-||.+... .....+||+|++ |.=|.+.      
T Consensus       110 ~~~v~~vDis~~al~~A~~N~~~~~~---------------~~~~~D~~~~l~-~~~~~~fDlVv~-NPPy~~~~~~~~~  172 (251)
T TIGR03704       110 GIELHAADIDPAAVRCARRNLADAGG---------------TVHEGDLYDALP-TALRGRVDILAA-NAPYVPTDAIALM  172 (251)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCC---------------EEEEeechhhcc-hhcCCCEeEEEE-CCCCCCchhhhcC
Confidence            569999998 8899999999988752               233344433211 011346898664 4444321      


Q ss_pred             ---------------------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecCCCC
Q 032462           78 ---------------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKE  129 (140)
Q Consensus        78 ---------------------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~~~l  129 (140)
                                           ....++.....+++|+|.+++.+...+   .....+.+ +.+|....+..+++
T Consensus       173 ~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~---~~~v~~~l~~~g~~~~~~~~~~~  243 (251)
T TIGR03704       173 PPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQ---APLAVEAFARAGLIARVASSEEL  243 (251)
T ss_pred             CHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcch---HHHHHHHHHHCCCCceeeEcccc
Confidence                                 123566666778899999998766443   24556666 45898887776665

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=96.76  E-value=0.01  Score=46.63  Aligned_cols=85  Identities=15%  Similarity=0.070  Sum_probs=56.9

Q ss_pred             ccCCC-EEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            2 ALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         2 A~lGa-~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      |..|+ .|+..|.... .+.+.|.......         ...++.+...+..+.   +. ...||+|++..++|......
T Consensus       141 a~~g~~~V~GiD~S~~-~l~q~~a~~~~~~---------~~~~i~~~~~d~e~l---p~-~~~FD~V~s~~vl~H~~dp~  206 (322)
T PRK15068        141 LGAGAKLVVGIDPSQL-FLCQFEAVRKLLG---------NDQRAHLLPLGIEQL---PA-LKAFDTVFSMGVLYHRRSPL  206 (322)
T ss_pred             HHcCCCEEEEEcCCHH-HHHHHHHHHHhcC---------CCCCeEEEeCCHHHC---CC-cCCcCEEEECChhhccCCHH
Confidence            45676 6999997331 2233333222210         124566666665433   22 56899999999999887788


Q ss_pred             HHHHHHHHhcCCCeEEEEEE
Q 032462           81 PLLQTIFALSGPKTTILLGY  100 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~  100 (140)
                      .+++-+.+.++|+|.+++..
T Consensus       207 ~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        207 DHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             HHHHHHHHhcCCCcEEEEEE
Confidence            88999999999999998753

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=96.72  E-value=0.018  Score=44.64  Aligned_cols=81  Identities=12%  Similarity=0.149  Sum_probs=60.7

Q ss_pred             CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHHH
Q 032462            5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~L   82 (140)
                      +.+|++.|.+.+++..++|++..+.           ..++++..-|=.+.+     .+.+|+|+.+-+++.-  +....+
T Consensus       173 ~~~~~~~D~~~~~~~a~~~~~~~gl-----------~~rv~~~~~d~~~~~-----~~~~D~v~~~~~lh~~~~~~~~~i  236 (306)
T TIGR02716       173 ELDSTILNLPGAIDLVNENAAEKGV-----------ADRMRGIAVDIYKES-----YPEADAVLFCRILYSANEQLSTIM  236 (306)
T ss_pred             CCEEEEEecHHHHHHHHHHHHhCCc-----------cceEEEEecCccCCC-----CCCCCEEEeEhhhhcCChHHHHHH
Confidence            3589999999999999999987753           245666665543321     2347999999988753  455678


Q ss_pred             HHHHHHhcCCCeEEEEEEE
Q 032462           83 LQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~  101 (140)
                      ++.+.+.++|+|++++.-.
T Consensus       237 l~~~~~~L~pgG~l~i~d~  255 (306)
T TIGR02716       237 CKKAFDAMRSGGRLLILDM  255 (306)
T ss_pred             HHHHHHhcCCCCEEEEEEe
Confidence            8889999999999988754

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.72  E-value=0.019  Score=44.76  Aligned_cols=101  Identities=12%  Similarity=0.129  Sum_probs=65.0

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe-------------
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT-------------   70 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas-------------   70 (140)
                      +++|+.+|. +..+...++|++.|+.           ..++.+..-|+-+.  .+  ..+||+|++-             
T Consensus       157 ~~~V~avDis~~al~~A~~n~~~~~l-----------~~~i~~~~~D~~~~--l~--~~~fDlIvsNPPyi~~~~~~~l~  221 (307)
T PRK11805        157 DAEVDAVDISPDALAVAEINIERHGL-----------EDRVTLIESDLFAA--LP--GRRYDLIVSNPPYVDAEDMADLP  221 (307)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHhCC-----------CCcEEEEECchhhh--CC--CCCccEEEECCCCCCccchhhcC
Confidence            469999998 8899999999998864           24567776676432  11  2479999973             


Q ss_pred             -ecccCcc-----------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEEee
Q 032462           71 -DVVYAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV  124 (140)
Q Consensus        71 -DviY~~~-----------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~v  124 (140)
                       ++.|++.           ....+++.....++|+|.+++-.... .   ..+.+.+. .+|.+..+
T Consensus       222 ~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~---~~~~~~~~~~~~~~~~~  284 (307)
T PRK11805        222 AEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-R---VHLEEAYPDVPFTWLEF  284 (307)
T ss_pred             HhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-H---HHHHHHHhhCCCEEEEe
Confidence             2233332           23567777778899999988754432 2   23334443 36655443

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=96.71  E-value=0.035  Score=41.24  Aligned_cols=99  Identities=17%  Similarity=0.231  Sum_probs=63.7

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc-------
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-------   76 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~-------   76 (140)
                      +++|+..|. +..+..++.|+..+..            .++.+..-++.+..    ...+||+|++. .-|..       
T Consensus       111 ~~~v~~iD~~~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~~----~~~~fD~Vi~n-pPy~~~~~~~~~  173 (251)
T TIGR03534       111 DARVTAVDISPEALAVARKNAARLGL------------DNVTFLQSDWFEPL----PGGKFDLIVSN-PPYIPEADIHLL  173 (251)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCC------------CeEEEEECchhccC----cCCceeEEEEC-CCCCchhhhhhc
Confidence            459999998 8899999999988753            24666666665431    14689999862 22221       


Q ss_pred             ---------c-----------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEe
Q 032462           77 ---------H-----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKL  123 (140)
Q Consensus        77 ---------~-----------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~  123 (140)
                               .           ....++..+..+++|+|.+++....+..   +...+.+ +.+|....
T Consensus       174 ~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~---~~~~~~l~~~gf~~v~  238 (251)
T TIGR03534       174 DPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQG---EAVRALFEAAGFADVE  238 (251)
T ss_pred             ChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHH---HHHHHHHHhCCCCceE
Confidence                     0           1235667777788999999887654433   2333334 35786433

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=96.70  E-value=0.0084  Score=44.07  Aligned_cols=77  Identities=16%  Similarity=0.161  Sum_probs=52.4

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cc
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HL   78 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~   78 (140)
                      +..|++|+..|. ++++...++++..+..           ..++....-++.+.      ...||+|+++++++.-  ..
T Consensus        74 a~~~~~v~gvD~s~~~i~~a~~~~~~~~~-----------~~~i~~~~~d~~~~------~~~fD~ii~~~~l~~~~~~~  136 (219)
T TIGR02021        74 AKRGAIVKAVDISEQMVQMARNRAQGRDV-----------AGNVEFEVNDLLSL------CGEFDIVVCMDVLIHYPASD  136 (219)
T ss_pred             HHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECChhhC------CCCcCEEEEhhHHHhCCHHH
Confidence            456789999998 8899999999876543           13456666555443      1589999999998542  33


Q ss_pred             hHHHHHHHHHhcCCCeE
Q 032462           79 LEPLLQTIFALSGPKTT   95 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~   95 (140)
                      ...+++.+..+++++..
T Consensus       137 ~~~~l~~i~~~~~~~~~  153 (219)
T TIGR02021       137 MAKALGHLASLTKERVI  153 (219)
T ss_pred             HHHHHHHHHHHhCCCEE
Confidence            45566666666655433

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=96.68  E-value=0.052  Score=44.27  Aligned_cols=100  Identities=15%  Similarity=0.129  Sum_probs=63.0

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc------
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH------   77 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~------   77 (140)
                      +++|+.+|. ++.++..++|++.|.             .++++..-||.+... + ...+||+|++ +.=|-+.      
T Consensus       275 ~a~VtAVDiS~~ALe~AreNa~~~g-------------~rV~fi~gDl~e~~l-~-~~~~FDLIVS-NPPYI~~~e~~l~  338 (423)
T PRK14966        275 DAFVRASDISPPALETARKNAADLG-------------ARVEFAHGSWFDTDM-P-SEGKWDIIVS-NPPYIENGDKHLL  338 (423)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcC-------------CcEEEEEcchhcccc-c-cCCCccEEEE-CCCCCCcchhhhc
Confidence            569999998 889999999998764             256777777755321 1 1347998886 3333211      


Q ss_pred             --------------------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEe
Q 032462           78 --------------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKL  123 (140)
Q Consensus        78 --------------------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~  123 (140)
                                          ....+++.+...++|+|.+++-......   +...+.+ +.||...+
T Consensus       339 ~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~---e~V~~ll~~~Gf~~v~  402 (423)
T PRK14966        339 QGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQG---AAVRGVLAENGFSGVE  402 (423)
T ss_pred             chhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHH---HHHHHHHHHCCCcEEE
Confidence                                2335666666778899987765544333   2334444 35776433

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=96.68  E-value=0.011  Score=44.92  Aligned_cols=81  Identities=17%  Similarity=0.147  Sum_probs=58.0

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchH
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLE   80 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~   80 (140)
                      .|++|+..|. +..+...+++...              ..++.+...|..+.+   .....||+|++.++++.-  +...
T Consensus        74 ~~~~v~giD~s~~~~~~a~~~~~~--------------~~~i~~~~~D~~~~~---~~~~~FD~V~s~~~l~h~~~~d~~  136 (263)
T PTZ00098         74 YGAHVHGVDICEKMVNIAKLRNSD--------------KNKIEFEANDILKKD---FPENTFDMIYSRDAILHLSYADKK  136 (263)
T ss_pred             cCCEEEEEECCHHHHHHHHHHcCc--------------CCceEEEECCcccCC---CCCCCeEEEEEhhhHHhCCHHHHH
Confidence            4779999998 7788888776432              134555555554321   224689999999988653  3567


Q ss_pred             HHHHHHHHhcCCCeEEEEEEE
Q 032462           81 PLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      .+++-+.++++|+|.+++...
T Consensus       137 ~~l~~i~r~LkPGG~lvi~d~  157 (263)
T PTZ00098        137 KLFEKCYKWLKPNGILLITDY  157 (263)
T ss_pred             HHHHHHHHHcCCCcEEEEEEe
Confidence            888999999999999987643

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=96.61  E-value=0.036  Score=43.99  Aligned_cols=102  Identities=13%  Similarity=0.044  Sum_probs=65.5

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      +.+|+.+|. ++++...++|...+               ++.+..-|..+   .+.....||+|+.+.++..-...+.++
T Consensus       137 ~~~VtgVD~S~~mL~~A~~k~~~~---------------~i~~i~gD~e~---lp~~~~sFDvVIs~~~L~~~~d~~~~L  198 (340)
T PLN02490        137 AKNVTILDQSPHQLAKAKQKEPLK---------------ECKIIEGDAED---LPFPTDYADRYVSAGSIEYWPDPQRGI  198 (340)
T ss_pred             CCEEEEEECCHHHHHHHHHhhhcc---------------CCeEEeccHHh---CCCCCCceeEEEEcChhhhCCCHHHHH
Confidence            358999998 77888888775421               23333333322   122246799999999887655566788


Q ss_pred             HHHHHhcCCCeEEEEEEEecCh--------------hHHHHHHHHHH-hcCeEEee
Q 032462           84 QTIFALSGPKTTILLGYEIRST--------------SVHEQMLQMWK-SNFNVKLV  124 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~~R~~--------------~~~~~F~~~~~-~~f~v~~v  124 (140)
                      +-+.++++|+|.+++.......              ...+.+.+.++ .||+..++
T Consensus       199 ~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i  254 (340)
T PLN02490        199 KEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL  254 (340)
T ss_pred             HHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence            8889999999998765432110              02345556664 59985554

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=96.60  E-value=0.0089  Score=47.99  Aligned_cols=79  Identities=22%  Similarity=0.304  Sum_probs=52.4

Q ss_pred             CC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462            5 GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL   82 (140)
Q Consensus         5 Ga-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L   82 (140)
                      |+ +|++.|. ++.++.+++|++.|+.            .++++..-|-...  ......+||+|.. |- |.  ...++
T Consensus        68 ga~~Vv~nD~n~~Av~~i~~N~~~N~~------------~~~~v~~~Da~~~--l~~~~~~fDvIdl-DP-fG--s~~~f  129 (374)
T TIGR00308        68 GVREVFANDINPKAVESIKNNVEYNSV------------ENIEVPNEDAANV--LRYRNRKFHVIDI-DP-FG--TPAPF  129 (374)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHhCC------------CcEEEEchhHHHH--HHHhCCCCCEEEe-CC-CC--CcHHH
Confidence            66 8999998 8899999999999964            2344444333222  1112357998877 88 64  33466


Q ss_pred             HHHHHHhcCCCeEEEEEEE
Q 032462           83 LQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~  101 (140)
                      ++..-+.+.++|.+++..+
T Consensus       130 ld~al~~~~~~glL~vTaT  148 (374)
T TIGR00308       130 VDSAIQASAERGLLLVTAT  148 (374)
T ss_pred             HHHHHHhcccCCEEEEEec
Confidence            7666666667777777644

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.60  E-value=0.062  Score=40.61  Aligned_cols=96  Identities=18%  Similarity=0.250  Sum_probs=62.7

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe--------------
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT--------------   70 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas--------------   70 (140)
                      ++|+.+|. +..+..+++|+. +..           ..++.+..-||.++..    ..+||+|++.              
T Consensus       133 ~~v~~iDis~~~l~~a~~n~~-~~~-----------~~~i~~~~~d~~~~~~----~~~fD~Iv~npPy~~~~~~~~~~~  196 (275)
T PRK09328        133 AEVTAVDISPEALAVARRNAK-HGL-----------GARVEFLQGDWFEPLP----GGRFDLIVSNPPYIPEADIHLLQP  196 (275)
T ss_pred             CEEEEEECCHHHHHHHHHHHH-hCC-----------CCcEEEEEccccCcCC----CCceeEEEECCCcCCcchhhhCCc
Confidence            58999998 789999999998 221           2467777778854421    3689999872              


Q ss_pred             ecc-cCc-----------cchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCe
Q 032462           71 DVV-YAE-----------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFN  120 (140)
Q Consensus        71 Dvi-Y~~-----------~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~  120 (140)
                      ++. |.+           +.+..++..+..+++|+|.+++....+..   +.+.+.+ +.||.
T Consensus       197 ~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~---~~~~~~l~~~gf~  256 (275)
T PRK09328        197 EVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQG---EAVRALLAAAGFA  256 (275)
T ss_pred             hhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHH---HHHHHHHHhCCCc
Confidence            222 222           12355666777889999999886544332   2344444 45786

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=96.60  E-value=0.026  Score=41.45  Aligned_cols=73  Identities=18%  Similarity=0.184  Sum_probs=48.2

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC-c-cc
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-E-HL   78 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~-~-~~   78 (140)
                      +..|.+|+..|. +.++...+++...+..           ..++.+...++..      ....||+|++.+++.. + ..
T Consensus        82 ~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-----------~~~i~~~~~d~~~------~~~~fD~v~~~~~l~~~~~~~  144 (230)
T PRK07580         82 ARRGAKVVASDISPQMVEEARERAPEAGL-----------AGNITFEVGDLES------LLGRFDTVVCLDVLIHYPQED  144 (230)
T ss_pred             HHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------ccCcEEEEcCchh------ccCCcCEEEEcchhhcCCHHH
Confidence            456789999998 7789999988765542           1355666655432      1367999999999833 2 34


Q ss_pred             hHHHHHHHHHhcC
Q 032462           79 LEPLLQTIFALSG   91 (140)
Q Consensus        79 ~~~L~~tl~~ll~   91 (140)
                      ...+++.+..+++
T Consensus       145 ~~~~l~~l~~~~~  157 (230)
T PRK07580        145 AARMLAHLASLTR  157 (230)
T ss_pred             HHHHHHHHHhhcC
Confidence            4455555555443

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.55  E-value=0.037  Score=46.14  Aligned_cols=101  Identities=19%  Similarity=0.360  Sum_probs=63.8

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe-------------
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT-------------   70 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas-------------   70 (140)
                      +++|+.+|. +..+...++|+..|+.           ..++.+..-||-+..  +  ..+||+|++-             
T Consensus       162 ~~~v~avDis~~al~~A~~N~~~~~l-----------~~~v~~~~~D~~~~~--~--~~~fDlIvsNPPYi~~~~~~~l~  226 (506)
T PRK01544        162 NANVIATDISLDAIEVAKSNAIKYEV-----------TDRIQIIHSNWFENI--E--KQKFDFIVSNPPYISHSEKSEMA  226 (506)
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHcCC-----------ccceeeeecchhhhC--c--CCCccEEEECCCCCCchhhhhcC
Confidence            569999998 7899999999988763           245666666664321  1  3479999961             


Q ss_pred             -ecc-cCcc-----------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEe
Q 032462           71 -DVV-YAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKL  123 (140)
Q Consensus        71 -Dvi-Y~~~-----------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~  123 (140)
                       +++ |++.           ....++..+..+++|+|.+++.......+   ...+.+ +.+|....
T Consensus       227 ~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~---~v~~~~~~~g~~~~~  290 (506)
T PRK01544        227 IETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEE---AVTQIFLDHGYNIES  290 (506)
T ss_pred             chhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHH---HHHHHHHhcCCCceE
Confidence             121 3321           23446666677889999998865544332   333333 34676433

>TIGR00095 RNA methyltransferase, RsmD family

Probab=96.54  E-value=0.013  Score=42.51  Aligned_cols=91  Identities=18%  Similarity=0.118  Sum_probs=58.5

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      ++.|| +|++-|. +..+..+++|++.|+..           .++++..-|-.+.-........++.||-.|-=|.....
T Consensus        68 ~srga~~v~~vE~~~~a~~~~~~N~~~~~~~-----------~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~  136 (189)
T TIGR00095        68 LSRGAKVAFLEEDDRKANQTLKENLALLKSG-----------EQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGAL  136 (189)
T ss_pred             HhCCCCEEEEEeCCHHHHHHHHHHHHHhCCc-----------ccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcH
Confidence            35688 8999998 78999999999999742           23333322221100000012346777888999988888


Q ss_pred             HHHHHHHHH--hcCCCeEEEEEEEec
Q 032462           80 EPLLQTIFA--LSGPKTTILLGYEIR  103 (140)
Q Consensus        80 ~~L~~tl~~--ll~~~~~~~~~~~~R  103 (140)
                      +.++..+..  ++.+++.+++-+..+
T Consensus       137 ~~~l~~l~~~~~l~~~~iiv~E~~~~  162 (189)
T TIGR00095       137 QALLELCENNWILEDTVLIVVEEDRE  162 (189)
T ss_pred             HHHHHHHHHCCCCCCCeEEEEEecCC
Confidence            888887754  566777666655533

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=96.52  E-value=0.043  Score=41.70  Aligned_cols=104  Identities=22%  Similarity=0.259  Sum_probs=74.7

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc-------
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-------   77 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~-------   77 (140)
                      ++|+.-+. +...+..++|+++|..           ..++++..-|-.+-... .....||+|++-=--|...       
T Consensus        69 a~I~~VEiq~~~a~~A~~nv~ln~l-----------~~ri~v~~~Di~~~~~~-~~~~~fD~Ii~NPPyf~~~~~~~~~~  136 (248)
T COG4123          69 AKIVGVEIQEEAAEMAQRNVALNPL-----------EERIQVIEADIKEFLKA-LVFASFDLIICNPPYFKQGSRLNENP  136 (248)
T ss_pred             CcEEEEEeCHHHHHHHHHHHHhCcc-----------hhceeEehhhHHHhhhc-ccccccCEEEeCCCCCCCccccCcCh
Confidence            68999997 7788999999999875           36777777665543321 1234799999865555431       


Q ss_pred             -----------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHh-cCeEEee
Q 032462           78 -----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLV  124 (140)
Q Consensus        78 -----------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~-~f~v~~v  124 (140)
                                 .++.++++-.++++++|.+.+.++   ++....+++.+++ +|...++
T Consensus       137 ~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r---~erl~ei~~~l~~~~~~~k~i  192 (248)
T COG4123         137 LRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR---PERLAEIIELLKSYNLEPKRI  192 (248)
T ss_pred             hhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec---HHHHHHHHHHHHhcCCCceEE
Confidence                       267899999999999999988765   3335678888865 7775543

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=96.46  E-value=0.052  Score=40.30  Aligned_cols=125  Identities=16%  Similarity=0.124  Sum_probs=65.7

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCC---CCCCCceEEEEeecCCCccccccCCCccEEEEeec--cc
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG---SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV--VY   74 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~---~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDv--iY   74 (140)
                      ||..|++|+..|. +..++.+..   .|+........+   ......|.+..-|--+...  .....||.|+-+-+  -.
T Consensus        55 LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~--~~~~~fd~v~D~~~~~~l  129 (218)
T PRK13255         55 LAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA--ADLADVDAVYDRAALIAL  129 (218)
T ss_pred             HHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCc--ccCCCeeEEEehHhHhhC
Confidence            5788999999998 667775431   221110000000   0012334433333322211  11246777776553  23


Q ss_pred             CccchHHHHHHHHHhcCCCeEEEE-EEEe--cC---h---hHHHHHHHHHHhcCeEEeecCCCCC
Q 032462           75 AEHLLEPLLQTIFALSGPKTTILL-GYEI--RS---T---SVHEQMLQMWKSNFNVKLVPKAKES  130 (140)
Q Consensus        75 ~~~~~~~L~~tl~~ll~~~~~~~~-~~~~--R~---~---~~~~~F~~~~~~~f~v~~v~~~~l~  130 (140)
                      .++..+..+..|.++++|+|+.++ +...  ..   +   -+.+...+.++.+|.++.+.....+
T Consensus       130 ~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~~~~i~~~~~~~~~  194 (218)
T PRK13255        130 PEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAGCFEIELLERQDVL  194 (218)
T ss_pred             CHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcCCceEEEeeecccc
Confidence            355678889999999999986443 3322  11   1   0133444444556888877665543

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=96.45  E-value=0.011  Score=44.30  Aligned_cols=81  Identities=14%  Similarity=0.094  Sum_probs=55.8

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      +..|++|+..|. ++++...+.+...                 ..+..-|..+   .+.....||+|+++.++..-....
T Consensus        61 ~~~~~~v~~~D~s~~~l~~a~~~~~~-----------------~~~~~~d~~~---~~~~~~~fD~V~s~~~l~~~~d~~  120 (251)
T PRK10258         61 RERGSQVTALDLSPPMLAQARQKDAA-----------------DHYLAGDIES---LPLATATFDLAWSNLAVQWCGNLS  120 (251)
T ss_pred             HHcCCeEEEEECCHHHHHHHHhhCCC-----------------CCEEEcCccc---CcCCCCcEEEEEECchhhhcCCHH
Confidence            456889999998 7788877766321                 1112222222   122245799999998887666677


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEe
Q 032462           81 PLLQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~  102 (140)
                      .++.-+.+.++|+|.++++.-.
T Consensus       121 ~~l~~~~~~Lk~gG~l~~~~~~  142 (251)
T PRK10258        121 TALRELYRVVRPGGVVAFTTLV  142 (251)
T ss_pred             HHHHHHHHHcCCCeEEEEEeCC
Confidence            8888888999999999887543

>PRK07402 precorrin-6B methylase; Provisional

Probab=96.44  E-value=0.087  Score=38.05  Aligned_cols=109  Identities=17%  Similarity=0.196  Sum_probs=65.4

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      +++|+..|. ++.+..+++|++.++.            .++++..-+-.+  ..+.....+|.|.. |   .....+.++
T Consensus        64 ~~~V~~vD~s~~~~~~a~~n~~~~~~------------~~v~~~~~d~~~--~~~~~~~~~d~v~~-~---~~~~~~~~l  125 (196)
T PRK07402         64 KGRVIAIERDEEVVNLIRRNCDRFGV------------KNVEVIEGSAPE--CLAQLAPAPDRVCI-E---GGRPIKEIL  125 (196)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHhCC------------CCeEEEECchHH--HHhhCCCCCCEEEE-E---CCcCHHHHH
Confidence            469999998 8899999999987753            234444322211  11112234565432 2   223457888


Q ss_pred             HHHHHhcCCCeEEEEEEEecCh-hHHHHHHHHHH-hcCeEEeecCCCCCc
Q 032462           84 QTIFALSGPKTTILLGYEIRST-SVHEQMLQMWK-SNFNVKLVPKAKEST  131 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~~R~~-~~~~~F~~~~~-~~f~v~~v~~~~l~~  131 (140)
                      ..+...++|+|.+++....... ......++.++ .++++.++......+
T Consensus       126 ~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (196)
T PRK07402        126 QAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAAVNRLET  175 (196)
T ss_pred             HHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEEhhhccc
Confidence            8888889999998877654332 11233444443 477887776655443

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=96.34  E-value=0.073  Score=39.21  Aligned_cols=80  Identities=14%  Similarity=0.055  Sum_probs=55.3

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      ++|+..|. +..+...++|+..+..            .++.+..-+..+.   +....+||+|+.+..+-.-.....+++
T Consensus        71 ~~v~gvD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~---~~~~~~fD~V~~~~~l~~~~~~~~~l~  135 (231)
T TIGR02752        71 GHVIGLDFSENMLSVGRQKVKDAGL------------HNVELVHGNAMEL---PFDDNSFDYVTIGFGLRNVPDYMQVLR  135 (231)
T ss_pred             CEEEEEECCHHHHHHHHHHHHhcCC------------CceEEEEechhcC---CCCCCCccEEEEecccccCCCHHHHHH
Confidence            58999998 7899999999875532            2344443333221   122468999998876654455567788


Q ss_pred             HHHHhcCCCeEEEEEE
Q 032462           85 TIFALSGPKTTILLGY  100 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~  100 (140)
                      .+.++++|+|.+++..
T Consensus       136 ~~~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       136 EMYRVVKPGGKVVCLE  151 (231)
T ss_pred             HHHHHcCcCeEEEEEE
Confidence            8888899999987654

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=96.33  E-value=0.099  Score=38.99  Aligned_cols=97  Identities=12%  Similarity=0.114  Sum_probs=70.5

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-cCCCccEEEEeecccCccchHH
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEHLLEP   81 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-~~~~~D~IlasDviY~~~~~~~   81 (140)
                      -|.+||+-|- +.+-+.+.+.++.|+.            .++.-...-=|  +..+. ...++|.||++=|+-..+....
T Consensus        98 p~~svt~lDpn~~mee~~~ks~~E~k~------------~~~~~fvva~g--e~l~~l~d~s~DtVV~TlvLCSve~~~k  163 (252)
T KOG4300|consen   98 PINSVTCLDPNEKMEEIADKSAAEKKP------------LQVERFVVADG--ENLPQLADGSYDTVVCTLVLCSVEDPVK  163 (252)
T ss_pred             CCceEEEeCCcHHHHHHHHHHHhhccC------------cceEEEEeech--hcCcccccCCeeeEEEEEEEeccCCHHH
Confidence            4678999997 7788888988888854            23332222223  22332 3679999999999999998888


Q ss_pred             HHHHHHHhcCCCeEEEEEEEecCh-hHHHHHHHH
Q 032462           82 LLQTIFALSGPKTTILLGYEIRST-SVHEQMLQM  114 (140)
Q Consensus        82 L~~tl~~ll~~~~~~~~~~~~R~~-~~~~~F~~~  114 (140)
                      -++-++++++|+|++++--..+.+ ++..++++.
T Consensus       164 ~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~  197 (252)
T KOG4300|consen  164 QLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQ  197 (252)
T ss_pred             HHHHHHHhcCCCcEEEEEecccccchHHHHHHHH
Confidence            899999999999999887777764 233444443

>TIGR00452 methyltransferase, putative

Probab=96.28  E-value=0.033  Score=43.70  Aligned_cols=84  Identities=14%  Similarity=0.035  Sum_probs=54.9

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      +..|+ .|+..|. +..+...+. ++....          ....+.+..++-.+-+   . ...||+|++..++|.-...
T Consensus       140 ~~~g~~~v~GiDpS~~ml~q~~~-~~~~~~----------~~~~v~~~~~~ie~lp---~-~~~FD~V~s~gvL~H~~dp  204 (314)
T TIGR00452       140 LGHGAKSLVGIDPTVLFLCQFEA-VRKLLD----------NDKRAILEPLGIEQLH---E-LYAFDTVFSMGVLYHRKSP  204 (314)
T ss_pred             HHcCCCEEEEEcCCHHHHHHHHH-HHHHhc----------cCCCeEEEECCHHHCC---C-CCCcCEEEEcchhhccCCH
Confidence            45677 7999997 444433221 111111          1234555555443322   1 2479999999999998777


Q ss_pred             HHHHHHHHHhcCCCeEEEEEE
Q 032462           80 EPLLQTIFALSGPKTTILLGY  100 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~  100 (140)
                      ...++.+.+.++|+|.+++..
T Consensus       205 ~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       205 LEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             HHHHHHHHHhcCCCCEEEEEE
Confidence            888999999999999998753

Known examples to date are restricted to the proteobacteria.

>PRK04457 spermidine synthase; Provisional

Probab=96.26  E-value=0.035  Score=42.33  Aligned_cols=100  Identities=13%  Similarity=0.164  Sum_probs=66.1

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc------
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH------   77 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~------   77 (140)
                      +++|++-|. ++++...+++...+..           .+++++..=|..+.  .+....+||+|+. |. |...      
T Consensus        90 ~~~v~~VEidp~vi~~A~~~f~~~~~-----------~~rv~v~~~Da~~~--l~~~~~~yD~I~~-D~-~~~~~~~~~l  154 (262)
T PRK04457         90 DTRQTAVEINPQVIAVARNHFELPEN-----------GERFEVIEADGAEY--IAVHRHSTDVILV-DG-FDGEGIIDAL  154 (262)
T ss_pred             CCeEEEEECCHHHHHHHHHHcCCCCC-----------CCceEEEECCHHHH--HHhCCCCCCEEEE-eC-CCCCCCcccc
Confidence            468999998 8899999998765431           24555544332211  1223468999985 53 4433      


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCe
Q 032462           78 LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN  120 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~  120 (140)
                      ....+++.+...++|+|++.+....+.. ....+++.+++.|.
T Consensus       155 ~t~efl~~~~~~L~pgGvlvin~~~~~~-~~~~~l~~l~~~F~  196 (262)
T PRK04457        155 CTQPFFDDCRNALSSDGIFVVNLWSRDK-RYDRYLERLESSFE  196 (262)
T ss_pred             CcHHHHHHHHHhcCCCcEEEEEcCCCch-hHHHHHHHHHHhcC
Confidence            2367888888899999998875544544 35677787777775

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=96.25  E-value=0.073  Score=42.63  Aligned_cols=104  Identities=10%  Similarity=0.061  Sum_probs=66.3

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      ||..|++|+..|. +..+...++|++.|+.            .++++..-|..+..  .....+||+|+. |-=|. ...
T Consensus       251 la~~~~~v~~vE~~~~av~~a~~N~~~~~~------------~~~~~~~~d~~~~~--~~~~~~~D~vi~-DPPr~-G~~  314 (374)
T TIGR02085       251 CAGPDTQLTGIEIESEAIACAQQSAQMLGL------------DNLSFAALDSAKFA--TAQMSAPELVLV-NPPRR-GIG  314 (374)
T ss_pred             HhhcCCeEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEECCHHHHH--HhcCCCCCEEEE-CCCCC-CCc
Confidence            3556789999998 8899999999999864            24555554443211  111245887654 65553 455


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEeec
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVP  125 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~v~  125 (140)
                      +.++..|.. ++|++.+|+++.   +.+..+=+..+ .||.++.+-
T Consensus       315 ~~~l~~l~~-~~p~~ivyvsc~---p~TlaRDl~~L-~gy~l~~~~  355 (374)
T TIGR02085       315 KELCDYLSQ-MAPKFILYSSCN---AQTMAKDIAEL-SGYQIERVQ  355 (374)
T ss_pred             HHHHHHHHh-cCCCeEEEEEeC---HHHHHHHHHHh-cCceEEEEE
Confidence            666676755 468899999875   33333223333 689888763

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=96.22  E-value=0.037  Score=44.98  Aligned_cols=106  Identities=14%  Similarity=0.124  Sum_probs=67.0

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCc-cccccCCCccEEEEeecccCccch
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~-~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      |+.+.+|+.-|. ++.+..+++|++.|+.            .++++..-|+.+.. ........||+|+. |.=+. .+.
T Consensus       311 a~~~~~V~~vE~~~~av~~a~~n~~~~~~------------~nv~~~~~d~~~~l~~~~~~~~~~D~vi~-dPPr~-G~~  376 (431)
T TIGR00479       311 AKQAKSVVGIEVVPESVEKAQQNAELNGI------------ANVEFLAGTLETVLPKQPWAGQIPDVLLL-DPPRK-GCA  376 (431)
T ss_pred             HHhCCEEEEEEcCHHHHHHHHHHHHHhCC------------CceEEEeCCHHHHHHHHHhcCCCCCEEEE-CcCCC-CCC
Confidence            455569999998 8899999999999864            35566555553211 01111346898874 33332 235


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeec
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVP  125 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~  125 (140)
                      ..+++.+.. ++|++.+|+++.   +.+..+=++.+ +.||.++.+-
T Consensus       377 ~~~l~~l~~-l~~~~ivyvsc~---p~tlard~~~l~~~gy~~~~~~  419 (431)
T TIGR00479       377 AEVLRTIIE-LKPERIVYVSCN---PATLARDLEFLCKEGYGITWVQ  419 (431)
T ss_pred             HHHHHHHHh-cCCCEEEEEcCC---HHHHHHHHHHHHHCCeeEEEEE
Confidence            666676665 567888888765   44444445555 5689887763

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=96.18  E-value=0.062  Score=43.26  Aligned_cols=83  Identities=11%  Similarity=0.049  Sum_probs=54.6

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc------c
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE------H   77 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~------~   77 (140)
                      +++|+++|. +..+...++|++.|...         ...++++.   |++.... ....+||+|++- --|..      .
T Consensus       252 ~~~V~~vD~S~~Av~~A~~N~~~n~~~---------~~~~v~~~---~~D~l~~-~~~~~fDlIlsN-PPfh~~~~~~~~  317 (378)
T PRK15001        252 QAKVVFVDESPMAVASSRLNVETNMPE---------ALDRCEFM---INNALSG-VEPFRFNAVLCN-PPFHQQHALTDN  317 (378)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCcc---------cCceEEEE---Ecccccc-CCCCCEEEEEEC-cCcccCccCCHH
Confidence            469999998 77999999999999742         11233333   4433211 113479999883 22221      2


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEEE
Q 032462           78 LLEPLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      ....++....+.++|+|.+++...
T Consensus       318 ia~~l~~~a~~~LkpGG~L~iV~n  341 (378)
T PRK15001        318 VAWEMFHHARRCLKINGELYIVAN  341 (378)
T ss_pred             HHHHHHHHHHHhcccCCEEEEEEe
Confidence            345677777888999999998864

>PRK08317 hypothetical protein; Provisional

Probab=96.11  E-value=0.074  Score=38.78  Aligned_cols=79  Identities=16%  Similarity=0.053  Sum_probs=56.7

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      ++|+.+|. +..+...+.+....             ..++.+...+..+.+   .....||+|++..++-.-.....+++
T Consensus        45 ~~v~~~d~~~~~~~~a~~~~~~~-------------~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~~~~~~~~~~~l~  108 (241)
T PRK08317         45 GRVVGIDRSEAMLALAKERAAGL-------------GPNVEFVRGDADGLP---FPDGSFDAVRSDRVLQHLEDPARALA  108 (241)
T ss_pred             cEEEEEeCCHHHHHHHHHHhhCC-------------CCceEEEecccccCC---CCCCCceEEEEechhhccCCHHHHHH
Confidence            58999998 77888888773211             234555555544322   22468999999998877666788999


Q ss_pred             HHHHhcCCCeEEEEEE
Q 032462           85 TIFALSGPKTTILLGY  100 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~  100 (140)
                      .+.++++|+|.+++..
T Consensus       109 ~~~~~L~~gG~l~~~~  124 (241)
T PRK08317        109 EIARVLRPGGRVVVLD  124 (241)
T ss_pred             HHHHHhcCCcEEEEEe
Confidence            9999999999987654

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=96.00  E-value=0.068  Score=40.17  Aligned_cols=85  Identities=13%  Similarity=0.178  Sum_probs=60.2

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--ccchH
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLE   80 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--~~~~~   80 (140)
                      .|++|+..|. ++++...++|+..+..           ..++++..-+..+.   +  ...+|+|+++=++..  +....
T Consensus        81 ~~~~v~gvD~S~~ml~~A~~~~~~~~~-----------~~~v~~~~~d~~~~---~--~~~~D~vv~~~~l~~l~~~~~~  144 (247)
T PRK15451         81 DNCKIIAIDNSPAMIERCRRHIDAYKA-----------PTPVDVIEGDIRDI---A--IENASMVVLNFTLQFLEPSERQ  144 (247)
T ss_pred             CCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEeCChhhC---C--CCCCCEEehhhHHHhCCHHHHH
Confidence            3679999998 8899999999987653           23455555443322   1  245899887655432  23456


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEecC
Q 032462           81 PLLQTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~R~  104 (140)
                      .+++.+.+.++|+|.++++...+.
T Consensus       145 ~~l~~i~~~LkpGG~l~l~e~~~~  168 (247)
T PRK15451        145 ALLDKIYQGLNPGGALVLSEKFSF  168 (247)
T ss_pred             HHHHHHHHhcCCCCEEEEEEecCC
Confidence            789999999999999999876654

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=95.99  E-value=0.095  Score=42.83  Aligned_cols=81  Identities=17%  Similarity=0.196  Sum_probs=51.5

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--------
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--------   75 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--------   75 (140)
                      +++|+..|. +..+..+++|++.++.            .++++..-|..+...  .....||+|+ +|.=+.        
T Consensus       275 ~~~v~avDi~~~~l~~~~~n~~~~g~------------~~v~~~~~D~~~~~~--~~~~~fD~Vl-~D~Pcsg~G~~~~~  339 (444)
T PRK14902        275 TGKVVALDIHEHKLKLIEENAKRLGL------------TNIETKALDARKVHE--KFAEKFDKIL-VDAPCSGLGVIRRK  339 (444)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCC------------CeEEEEeCCcccccc--hhcccCCEEE-EcCCCCCCeeeccC
Confidence            358999998 8899999999998764            236666656544311  1225799987 332111        


Q ss_pred             ------c--c-------chHHHHHHHHHhcCCCeEEEEEE
Q 032462           76 ------E--H-------LLEPLLQTIFALSGPKTTILLGY  100 (140)
Q Consensus        76 ------~--~-------~~~~L~~tl~~ll~~~~~~~~~~  100 (140)
                            .  .       ....++.....+++|+|.++.+.
T Consensus       340 p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst  379 (444)
T PRK14902        340 PDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST  379 (444)
T ss_pred             cchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence                  1  0       11345666677788998876543

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=95.90  E-value=0.15  Score=41.69  Aligned_cols=82  Identities=21%  Similarity=0.186  Sum_probs=48.4

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccc-cccCCCccEEEE------eecccC-c
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-KAVAPPFDYIIG------TDVVYA-E   76 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~-~~~~~~~D~Ila------sDviY~-~   76 (140)
                      ++|++-|. +..+..+++|++.++.            .+|++..-|-.+.... +.....||.|+.      .-++.. +
T Consensus       278 g~v~a~D~~~~rl~~~~~n~~r~g~------------~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p  345 (434)
T PRK14901        278 GEIWAVDRSASRLKKLQENAQRLGL------------KSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHP  345 (434)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHHcCC------------CeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCc
Confidence            48999997 8899999999998864            2344444332221100 012357999884      112211 1


Q ss_pred             c---------------chHHHHHHHHHhcCCCeEEEEE
Q 032462           77 H---------------LLEPLLQTIFALSGPKTTILLG   99 (140)
Q Consensus        77 ~---------------~~~~L~~tl~~ll~~~~~~~~~   99 (140)
                      +               ....++.....+++|+|.++.+
T Consensus       346 ~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvys  383 (434)
T PRK14901        346 DARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYA  383 (434)
T ss_pred             chhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            1               1245566666677898876544

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=95.82  E-value=0.016  Score=37.93  Aligned_cols=86  Identities=19%  Similarity=0.161  Sum_probs=59.5

Q ss_pred             cCC-CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc----
Q 032462            3 LLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----   76 (140)
Q Consensus         3 ~lG-a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~----   76 (140)
                      +.| ++|+..|. +..+...+.|+..+..           ..++++..-|+.+... .....+||+|++.=-....    
T Consensus        20 ~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-----------~~~~~~~~~D~~~~~~-~~~~~~~D~Iv~npP~~~~~~~~   87 (117)
T PF13659_consen   20 RRGAARVTGVDIDPEAVELARRNLPRNGL-----------DDRVEVIVGDARDLPE-PLPDGKFDLIVTNPPYGPRSGDK   87 (117)
T ss_dssp             HHCTCEEEEEESSHHHHHHHHHHCHHCTT-----------TTTEEEEESHHHHHHH-TCTTT-EEEEEE--STTSBTT--
T ss_pred             HHCCCeEEEEEECHHHHHHHHHHHHHccC-----------CceEEEEECchhhchh-hccCceeEEEEECCCCccccccc
Confidence            345 69999998 8899999999999864           2457777777754431 1236789999875444321    


Q ss_pred             ----cchHHHHHHHHHhcCCCeEEEEEE
Q 032462           77 ----HLLEPLLQTIFALSGPKTTILLGY  100 (140)
Q Consensus        77 ----~~~~~L~~tl~~ll~~~~~~~~~~  100 (140)
                          .....+++.+.++++|+|.+++..
T Consensus        88 ~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   88 AALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             --GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence                234677888888899999987754

...

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=95.81  E-value=0.04  Score=42.39  Aligned_cols=79  Identities=15%  Similarity=0.198  Sum_probs=57.3

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEP   81 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~   81 (140)
                      |++|+.-.. ++-...+++-++..+.           ...+.+..-||.+.      ..+||-|+.-+++-.=  ...+.
T Consensus        85 g~~v~gitlS~~Q~~~a~~~~~~~gl-----------~~~v~v~~~D~~~~------~~~fD~IvSi~~~Ehvg~~~~~~  147 (273)
T PF02353_consen   85 GCHVTGITLSEEQAEYARERIREAGL-----------EDRVEVRLQDYRDL------PGKFDRIVSIEMFEHVGRKNYPA  147 (273)
T ss_dssp             --EEEEEES-HHHHHHHHHHHHCSTS-----------SSTEEEEES-GGG---------S-SEEEEESEGGGTCGGGHHH
T ss_pred             CcEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEeecccc------CCCCCEEEEEechhhcChhHHHH
Confidence            888777666 7778888888876653           35778888888643      2399999999987663  67899


Q ss_pred             HHHHHHHhcCCCeEEEEEE
Q 032462           82 LLQTIFALSGPKTTILLGY  100 (140)
Q Consensus        82 L~~tl~~ll~~~~~~~~~~  100 (140)
                      +++.+.++|+|+|.+++-.
T Consensus       148 ~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  148 FFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             HHHHHHHHSETTEEEEEEE
T ss_pred             HHHHHHHhcCCCcEEEEEe
Confidence            9999999999999997643

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR00740 methyltransferase, putative

Probab=95.79  E-value=0.097  Score=38.97  Aligned_cols=84  Identities=13%  Similarity=0.086  Sum_probs=60.2

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEP   81 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~   81 (140)
                      |++|+..|. ++++..+++++.....           ..++.+..-++.+.+     ...+|+|+++.++-.-  +....
T Consensus        79 ~~~v~gvD~s~~ml~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~-----~~~~d~v~~~~~l~~~~~~~~~~  142 (239)
T TIGR00740        79 NVKIIGIDNSQPMVERCRQHIAAYHS-----------EIPVEILCNDIRHVE-----IKNASMVILNFTLQFLPPEDRIA  142 (239)
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEECChhhCC-----CCCCCEEeeecchhhCCHHHHHH
Confidence            679999998 8899999999865432           235666666665432     2358988877764432  23567


Q ss_pred             HHHHHHHhcCCCeEEEEEEEecC
Q 032462           82 LLQTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        82 L~~tl~~ll~~~~~~~~~~~~R~  104 (140)
                      +++.+.+.++|+|.++++-..+.
T Consensus       143 ~l~~i~~~LkpgG~l~i~d~~~~  165 (239)
T TIGR00740       143 LLTKIYEGLNPNGVLVLSEKFRF  165 (239)
T ss_pred             HHHHHHHhcCCCeEEEEeecccC
Confidence            88888889999999999876654

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=95.77  E-value=0.16  Score=40.89  Aligned_cols=76  Identities=14%  Similarity=0.152  Sum_probs=55.6

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchH
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLE   80 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~   80 (140)
                      .|++|+..|. ++.+...++++.  .             ..+++...++.+.      ...||.|++..++..-  ...+
T Consensus       189 ~g~~V~giDlS~~~l~~A~~~~~--~-------------l~v~~~~~D~~~l------~~~fD~Ivs~~~~ehvg~~~~~  247 (383)
T PRK11705        189 YGVSVVGVTISAEQQKLAQERCA--G-------------LPVEIRLQDYRDL------NGQFDRIVSVGMFEHVGPKNYR  247 (383)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHhc--c-------------CeEEEEECchhhc------CCCCCEEEEeCchhhCChHHHH
Confidence            4789999998 788888888773  1             1245555555322      3579999998877642  3457


Q ss_pred             HHHHHHHHhcCCCeEEEEEE
Q 032462           81 PLLQTIFALSGPKTTILLGY  100 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~  100 (140)
                      .+++.+.++++|+|.+++..
T Consensus       248 ~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        248 TYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             HHHHHHHHHcCCCcEEEEEE
Confidence            88999999999999998754

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=95.68  E-value=0.3  Score=35.32  Aligned_cols=79  Identities=15%  Similarity=0.086  Sum_probs=55.1

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      ++++..|. +..+...++|..  .            ..++.+...+-.+.+   ....+||+|+.+..+-.......+++
T Consensus        65 ~~~~~iD~~~~~~~~~~~~~~--~------------~~~i~~~~~d~~~~~---~~~~~~D~i~~~~~~~~~~~~~~~l~  127 (223)
T TIGR01934        65 GKVTGVDFSSEMLEVAKKKSE--L------------PLNIEFIQADAEALP---FEDNSFDAVTIAFGLRNVTDIQKALR  127 (223)
T ss_pred             ceEEEEECCHHHHHHHHHHhc--c------------CCCceEEecchhcCC---CCCCcEEEEEEeeeeCCcccHHHHHH
Confidence            38999998 778888888775  1            123444443333221   12357999999888766666778888


Q ss_pred             HHHHhcCCCeEEEEEEE
Q 032462           85 TIFALSGPKTTILLGYE  101 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~  101 (140)
                      .+..+++|+|.+++...
T Consensus       128 ~~~~~L~~gG~l~~~~~  144 (223)
T TIGR01934       128 EMYRVLKPGGRLVILEF  144 (223)
T ss_pred             HHHHHcCCCcEEEEEEe
Confidence            88999999999887543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK00536 speE spermidine synthase; Provisional

Probab=95.67  E-value=0.19  Score=38.54  Aligned_cols=97  Identities=8%  Similarity=-0.047  Sum_probs=60.1

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      .+|++-|. ++|++..++=+-.....+        ..+++++..  |-..    ....+||+|| .|..|.++    +.+
T Consensus        95 ~~v~mVeID~~Vv~~~k~~lP~~~~~~--------~DpRv~l~~--~~~~----~~~~~fDVII-vDs~~~~~----fy~  155 (262)
T PRK00536         95 THVDFVQADEKILDSFISFFPHFHEVK--------NNKNFTHAK--QLLD----LDIKKYDLII-CLQEPDIH----KID  155 (262)
T ss_pred             CeeEEEECCHHHHHHHHHHCHHHHHhh--------cCCCEEEee--hhhh----ccCCcCCEEE-EcCCCChH----HHH
Confidence            38999999 679998887433322222        235555554  4211    1236899999 88887754    447


Q ss_pred             HHHHhcCCCeEEEE--EEEecChhHHHHHHHHHHhcCeE
Q 032462           85 TIFALSGPKTTILL--GYEIRSTSVHEQMLQMWKSNFNV  121 (140)
Q Consensus        85 tl~~ll~~~~~~~~--~~~~R~~~~~~~F~~~~~~~f~v  121 (140)
                      .+++.|+|+|.+..  ....-..+.+..-.+.+++.|..
T Consensus       156 ~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~  194 (262)
T PRK00536        156 GLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSI  194 (262)
T ss_pred             HHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCc
Confidence            77888999998876  22222233344555556667773

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=95.65  E-value=0.029  Score=36.00  Aligned_cols=73  Identities=25%  Similarity=0.274  Sum_probs=52.4

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeec---ccCccchHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV---VYAEHLLEP   81 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDv---iY~~~~~~~   81 (140)
                      .+++..|. ++.+...+++.....             .++++..-|..+-   +....+||+|+++-+   .+.++....
T Consensus        25 ~~~~gvD~s~~~l~~~~~~~~~~~-------------~~~~~~~~D~~~l---~~~~~~~D~v~~~~~~~~~~~~~~~~~   88 (101)
T PF13649_consen   25 SRVIGVDISPEMLELAKKRFSEDG-------------PKVRFVQADARDL---PFSDGKFDLVVCSGLSLHHLSPEELEA   88 (101)
T ss_dssp             SEEEEEES-HHHHHHHHHHSHHTT-------------TTSEEEESCTTCH---HHHSSSEEEEEE-TTGGGGSSHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHhchhcC-------------CceEEEECCHhHC---cccCCCeeEEEEcCCccCCCCHHHHHH
Confidence            68999998 789999998887622             2556666666542   234679999999766   223457788


Q ss_pred             HHHHHHHhcCCCe
Q 032462           82 LLQTIFALSGPKT   94 (140)
Q Consensus        82 L~~tl~~ll~~~~   94 (140)
                      |++.+.++++|+|
T Consensus        89 ll~~~~~~l~pgG  101 (101)
T PF13649_consen   89 LLRRIARLLRPGG  101 (101)
T ss_dssp             HHHHHHHTEEEEE
T ss_pred             HHHHHHHHhCCCC
Confidence            8888888888765

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=95.62  E-value=0.14  Score=38.96  Aligned_cols=83  Identities=16%  Similarity=0.043  Sum_probs=57.6

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      ++|+..|. ++++...+++.......         ...++++..-+-.+   .+.....||+|+.+.++-+-.....+++
T Consensus        99 ~~V~gvD~S~~ml~~A~~r~~~~~~~---------~~~~i~~~~~d~~~---lp~~~~sfD~V~~~~~l~~~~d~~~~l~  166 (261)
T PLN02233         99 GKVMGLDFSSEQLAVAASRQELKAKS---------CYKNIEWIEGDATD---LPFDDCYFDAITMGYGLRNVVDRLKAMQ  166 (261)
T ss_pred             CEEEEEECCHHHHHHHHHHhhhhhhc---------cCCCeEEEEccccc---CCCCCCCEeEEEEecccccCCCHHHHHH
Confidence            48999998 88999888765432211         12345555444332   2233567999999988877666777888


Q ss_pred             HHHHhcCCCeEEEEEE
Q 032462           85 TIFALSGPKTTILLGY  100 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~  100 (140)
                      -+.+.++|+|.+++..
T Consensus       167 ei~rvLkpGG~l~i~d  182 (261)
T PLN02233        167 EMYRVLKPGSRVSILD  182 (261)
T ss_pred             HHHHHcCcCcEEEEEE
Confidence            8889999999987764

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=95.55  E-value=0.15  Score=40.03  Aligned_cols=87  Identities=20%  Similarity=0.190  Sum_probs=57.2

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc----
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----   76 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~----   76 (140)
                      |..|++|+..|. +.++...+.|++.++..            .+.+..-|-.   ..+.....||.|+. |.=|..    
T Consensus       201 a~~~~~v~g~Di~~~~~~~a~~nl~~~g~~------------~i~~~~~D~~---~l~~~~~~~D~Iv~-dPPyg~~~~~  264 (329)
T TIGR01177       201 GLMGAKVIGCDIDWKMVAGARINLEHYGIE------------DFFVKRGDAT---KLPLSSESVDAIAT-DPPYGRSTTA  264 (329)
T ss_pred             HHhCCeEEEEcCCHHHHHHHHHHHHHhCCC------------CCeEEecchh---cCCcccCCCCEEEE-CCCCcCcccc
Confidence            456889999998 77999999999876541            1333222222   22222457898775 333321    


Q ss_pred             ------cchHHHHHHHHHhcCCCeEEEEEEEecC
Q 032462           77 ------HLLEPLLQTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        77 ------~~~~~L~~tl~~ll~~~~~~~~~~~~R~  104 (140)
                            .....+++.+.+.++|+|.+.+..+.+.
T Consensus       265 ~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~  298 (329)
T TIGR01177       265 AGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI  298 (329)
T ss_pred             cCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence                  2356788888888999998887776553

This family is found exclusively in the Archaea.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=95.53  E-value=0.033  Score=42.98  Aligned_cols=82  Identities=21%  Similarity=0.279  Sum_probs=52.1

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe-------ec-----
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT-------DV-----   72 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas-------Dv-----   72 (140)
                      ++|++||. ++.+...++|++.|+. .          ....+.. +|....     ..+||+||.-       |-     
T Consensus       135 ~~V~a~Dis~~Al~~A~~Na~~~~l-~----------~~~~~~~-dlf~~~-----~~~fDlIVsNPPYip~~~~~~~~~  197 (280)
T COG2890         135 AEVIAVDISPDALALARENAERNGL-V----------RVLVVQS-DLFEPL-----RGKFDLIVSNPPYIPAEDPELLPE  197 (280)
T ss_pred             CeEEEEECCHHHHHHHHHHHHHcCC-c----------cEEEEee-eccccc-----CCceeEEEeCCCCCCCcccccChh
Confidence            49999998 8999999999999984 1          2344555 998663     2377877752       11     


Q ss_pred             --ccCc-----------cchHHHHHHHHHhcCCCeEEEEEEEecC
Q 032462           73 --VYAE-----------HLLEPLLQTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        73 --iY~~-----------~~~~~L~~tl~~ll~~~~~~~~~~~~R~  104 (140)
                        -|++           +.+..++.-+...++|++.+++-...-.
T Consensus       198 ~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q  242 (280)
T COG2890         198 VVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQ  242 (280)
T ss_pred             hhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCc
Confidence              1222           1233455555556678777766555333

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=95.49  E-value=0.042  Score=40.18  Aligned_cols=76  Identities=16%  Similarity=0.118  Sum_probs=52.8

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      .+|+.+|. ++.+...+.+..                .++.+...+..+.+   .....||+|+++.++..-.....++.
T Consensus        59 ~~~~~~D~~~~~~~~~~~~~~----------------~~~~~~~~d~~~~~---~~~~~fD~vi~~~~l~~~~~~~~~l~  119 (240)
T TIGR02072        59 AEFIALDISAGMLAQAKTKLS----------------ENVQFICGDAEKLP---LEDSSFDLIVSNLALQWCDDLSQALS  119 (240)
T ss_pred             CcEEEEeChHHHHHHHHHhcC----------------CCCeEEecchhhCC---CCCCceeEEEEhhhhhhccCHHHHHH
Confidence            36899997 666666655432                12333334443321   22467999999999988777788899


Q ss_pred             HHHHhcCCCeEEEEEE
Q 032462           85 TIFALSGPKTTILLGY  100 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~  100 (140)
                      .+.++++|+|.++++.
T Consensus       120 ~~~~~L~~~G~l~~~~  135 (240)
T TIGR02072       120 ELARVLKPGGLLAFST  135 (240)
T ss_pred             HHHHHcCCCcEEEEEe
Confidence            9999999999998764

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=95.45  E-value=0.33  Score=36.78  Aligned_cols=106  Identities=21%  Similarity=0.254  Sum_probs=59.6

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL   82 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L   82 (140)
                      +.++|++-|. +-+++.+++..+..+.             ++++..+|-.++-+ +....+||+++ +|--|-.+-+..+
T Consensus        66 ~~~~I~VvDiDeRll~fI~~~a~~~gl-------------~i~~~~~DlR~~LP-~~~~~~fD~f~-TDPPyT~~G~~LF  130 (243)
T PF01861_consen   66 LPKRITVVDIDERLLDFINRVAEEEGL-------------PIEAVHYDLRDPLP-EELRGKFDVFF-TDPPYTPEGLKLF  130 (243)
T ss_dssp             --SEEEEE-S-HHHHHHHHHHHHHHT---------------EEEE---TTS----TTTSS-BSEEE-E---SSHHHHHHH
T ss_pred             CCCeEEEEEcCHHHHHHHHHHHHHcCC-------------ceEEEEecccccCC-HHHhcCCCEEE-eCCCCCHHHHHHH
Confidence            3469999999 5599999999888764             37888888877632 23568999876 7999988766655


Q ss_pred             H-HHHHHhcCCCeEEEEEEEecChh--HHHHHHHHH-HhcCeEEee
Q 032462           83 L-QTIFALSGPKTTILLGYEIRSTS--VHEQMLQMW-KSNFNVKLV  124 (140)
Q Consensus        83 ~-~tl~~ll~~~~~~~~~~~~R~~~--~~~~F~~~~-~~~f~v~~v  124 (140)
                      + +.+..|-++++.+|+++..+...  .-..+-+.+ +.||.++.|
T Consensus       131 lsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~di  176 (243)
T PF01861_consen  131 LSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDI  176 (243)
T ss_dssp             HHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEE
T ss_pred             HHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHH
Confidence            4 45555656777899999988642  112222333 568988765

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=95.40  E-value=0.034  Score=42.41  Aligned_cols=97  Identities=15%  Similarity=0.192  Sum_probs=60.1

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhc--ccc--------cCCCC-----CCCCCceEEEEeecCCCccccccCCCccEEE
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTS--RIS--------QMNPG-----SDLLGSIQAVELDWGNEDHIKAVAPPFDYII   68 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~--~~~--------~~~~~-----~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Il   68 (140)
                      +.+|+.||. +.+|...++++-....  .++        ....+     ..-...|.+...|=.+.+.   ...+||+|+
T Consensus       132 ~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~---~~~~fD~I~  208 (264)
T smart00138      132 DVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP---PLGDFDLIF  208 (264)
T ss_pred             CeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC---ccCCCCEEE
Confidence            468999998 7899988876521100  000        00000     0011345555555444321   246899999


Q ss_pred             Eeecc-cCc-cchHHHHHHHHHhcCCCeEEEEEEEecC
Q 032462           69 GTDVV-YAE-HLLEPLLQTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        69 asDvi-Y~~-~~~~~L~~tl~~ll~~~~~~~~~~~~R~  104 (140)
                      +..++ |.+ .....+++.+...++|+|.++++....-
T Consensus       209 crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~~  246 (264)
T smart00138      209 CRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSESL  246 (264)
T ss_pred             echhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcccC
Confidence            99885 433 4567789999999999999999876543

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=95.40  E-value=0.12  Score=41.34  Aligned_cols=103  Identities=14%  Similarity=0.078  Sum_probs=63.0

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccc------------cCCCccEE
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA------------VAPPFDYI   67 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~------------~~~~~D~I   67 (140)
                      |+...+|+..|. +..+..+++|+..|+.            .++++..-|..+.-. ...            ...+||+|
T Consensus       225 a~~~~~v~~vE~~~~ai~~a~~N~~~~~~------------~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v  292 (362)
T PRK05031        225 ARNFRRVLATEISKPSVAAAQYNIAANGI------------DNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTI  292 (362)
T ss_pred             HhhCCEEEEEECCHHHHHHHHHHHHHhCC------------CcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEE
Confidence            333348999998 8899999999999974            245555555433210 000            02258887


Q ss_pred             EEeecccCccchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEee
Q 032462           68 IGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLV  124 (140)
Q Consensus        68 lasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~v  124 (140)
                      +. |-=| ..+.+.++..|..   +++.+|++...   .+..+=+..+.+||.+++|
T Consensus       293 ~l-DPPR-~G~~~~~l~~l~~---~~~ivyvSC~p---~tlarDl~~L~~gY~l~~v  341 (362)
T PRK05031        293 FV-DPPR-AGLDDETLKLVQA---YERILYISCNP---ETLCENLETLSQTHKVERF  341 (362)
T ss_pred             EE-CCCC-CCCcHHHHHHHHc---cCCEEEEEeCH---HHHHHHHHHHcCCcEEEEE
Confidence            76 5555 3455566665544   78889998775   3333323334348998876

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=95.31  E-value=0.31  Score=38.72  Aligned_cols=79  Identities=13%  Similarity=0.057  Sum_probs=55.1

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC-----ccch
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-----EHLL   79 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~-----~~~~   79 (140)
                      ++|+++|. +..+...+.|++.|...           .  ++   .|++...  ....+||+||..=....     ....
T Consensus       221 ~~v~~vDis~~Al~~A~~nl~~n~l~-----------~--~~---~~~D~~~--~~~~~fDlIvsNPPFH~g~~~~~~~~  282 (342)
T PRK09489        221 IRLTLSDVSAAALESSRATLAANGLE-----------G--EV---FASNVFS--DIKGRFDMIISNPPFHDGIQTSLDAA  282 (342)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCCC-----------C--EE---EEccccc--ccCCCccEEEECCCccCCccccHHHH
Confidence            48999998 77999999999998641           1  22   2332211  12468999998643322     2456


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEe
Q 032462           80 EPLLQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~  102 (140)
                      +.+++...+.++|+|.+++....
T Consensus       283 ~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        283 QTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             HHHHHHHHHhcCcCCEEEEEEeC
Confidence            78888888999999999876553

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=95.26  E-value=0.17  Score=36.95  Aligned_cols=79  Identities=14%  Similarity=0.046  Sum_probs=52.0

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      |+++.+|+..|. ++.+...++|+..+..            .++.+..-+..+.  .+ ...+||+|+..-.      ..
T Consensus        97 a~~~~~v~~vd~~~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~--~~-~~~~fD~I~~~~~------~~  155 (212)
T PRK00312         97 AHLVRRVFSVERIKTLQWEAKRRLKQLGL------------HNVSVRHGDGWKG--WP-AYAPFDRILVTAA------AP  155 (212)
T ss_pred             HHHhCEEEEEeCCHHHHHHHHHHHHHCCC------------CceEEEECCcccC--CC-cCCCcCEEEEccC------ch
Confidence            445568999997 7889999999987643            2355554443222  11 1367999887432      23


Q ss_pred             HHHHHHHHhcCCCeEEEEEEE
Q 032462           81 PLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      .+...+...++|+|.+++...
T Consensus       156 ~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        156 EIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             hhhHHHHHhcCCCcEEEEEEc
Confidence            445566778899999887765

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=95.26  E-value=0.09  Score=38.61  Aligned_cols=74  Identities=11%  Similarity=0.054  Sum_probs=49.5

Q ss_pred             EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHHH
Q 032462            7 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQT   85 (140)
Q Consensus         7 ~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~t   85 (140)
                      +|+..|. ++++...++|++.++.            .++++..-|..+..   ....+||+|+.+-..      ..+...
T Consensus       104 ~V~~vD~~~~~~~~A~~~~~~~g~------------~~v~~~~~d~~~~~---~~~~~fD~Ii~~~~~------~~~~~~  162 (215)
T TIGR00080       104 LVVSIERIPELAEKAERRLRKLGL------------DNVIVIVGDGTQGW---EPLAPYDRIYVTAAG------PKIPEA  162 (215)
T ss_pred             EEEEEeCCHHHHHHHHHHHHHCCC------------CCeEEEECCcccCC---cccCCCCEEEEcCCc------ccccHH
Confidence            5999997 8899999999988753            34555554443321   113589999865332      233455


Q ss_pred             HHHhcCCCeEEEEEEE
Q 032462           86 IFALSGPKTTILLGYE  101 (140)
Q Consensus        86 l~~ll~~~~~~~~~~~  101 (140)
                      +...++|+|++++...
T Consensus       163 ~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       163 LIDQLKEGGILVMPVG  178 (215)
T ss_pred             HHHhcCcCcEEEEEEc
Confidence            6677899999877654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=95.23  E-value=0.16  Score=39.57  Aligned_cols=104  Identities=13%  Similarity=0.086  Sum_probs=63.0

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      ||..|++|+..|. +..+...++|++.|+.            .++++..-|-.+..  ......||+|+. |-=+. ...
T Consensus       191 la~~~~~V~gvD~s~~av~~A~~n~~~~~l------------~~v~~~~~D~~~~~--~~~~~~~D~Vv~-dPPr~-G~~  254 (315)
T PRK03522        191 CATPGMQLTGIEISAEAIACAKQSAAELGL------------TNVQFQALDSTQFA--TAQGEVPDLVLV-NPPRR-GIG  254 (315)
T ss_pred             HHhcCCEEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEEcCHHHHH--HhcCCCCeEEEE-CCCCC-Ccc
Confidence            4567889999998 8899999999999864            24555544432211  111246898774 42221 234


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEeec
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVP  125 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~v~  125 (140)
                      ..+++.|.. ++|+..+|++.......   +=++.+ .+|+++++-
T Consensus       255 ~~~~~~l~~-~~~~~ivyvsc~p~t~~---rd~~~l-~~y~~~~~~  295 (315)
T PRK03522        255 KELCDYLSQ-MAPRFILYSSCNAQTMA---KDLAHL-PGYRIERVQ  295 (315)
T ss_pred             HHHHHHHHH-cCCCeEEEEECCcccch---hHHhhc-cCcEEEEEE
Confidence            455555544 45788888887654421   112223 588887763

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=95.22  E-value=0.1  Score=42.03  Aligned_cols=77  Identities=19%  Similarity=0.229  Sum_probs=50.3

Q ss_pred             CCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHH
Q 032462            4 LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEP   81 (140)
Q Consensus         4 lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~   81 (140)
                      .|+ +|++-|. ++.++.+++|++.|+..            .+.+..-|....  ... ..+||+|+. |- |  ....+
T Consensus        79 ~~~~~V~a~Din~~Av~~a~~N~~~N~~~------------~~~v~~~Da~~~--l~~-~~~fD~V~l-DP-~--Gs~~~  139 (382)
T PRK04338         79 TGVEKVTLNDINPDAVELIKKNLELNGLE------------NEKVFNKDANAL--LHE-ERKFDVVDI-DP-F--GSPAP  139 (382)
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHHhCCC------------ceEEEhhhHHHH--Hhh-cCCCCEEEE-CC-C--CCcHH
Confidence            354 8999998 88999999999999752            222333332111  011 356999887 76 4  34456


Q ss_pred             HHHH-HHHhcCCCeEEEEEE
Q 032462           82 LLQT-IFALSGPKTTILLGY  100 (140)
Q Consensus        82 L~~t-l~~ll~~~~~~~~~~  100 (140)
                      ++.. +.. +++++.++++.
T Consensus       140 ~l~~al~~-~~~~gilyvSA  158 (382)
T PRK04338        140 FLDSAIRS-VKRGGLLCVTA  158 (382)
T ss_pred             HHHHHHHH-hcCCCEEEEEe
Confidence            6666 444 56888888883

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=95.22  E-value=0.39  Score=39.30  Aligned_cols=102  Identities=16%  Similarity=0.092  Sum_probs=60.1

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEE------e-------
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIG------T-------   70 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ila------s-------   70 (140)
                      +++|+..|. +..+..+++|++.++.            .++++..-|..+..    ....||.|+.      +       
T Consensus       275 ~~~V~avD~s~~~l~~~~~~~~~~g~------------~~v~~~~~Da~~~~----~~~~fD~Vl~D~Pcsg~g~~~r~p  338 (445)
T PRK14904        275 RGQITAVDRYPQKLEKIRSHASALGI------------TIIETIEGDARSFS----PEEQPDAILLDAPCTGTGVLGRRA  338 (445)
T ss_pred             CcEEEEEECCHHHHHHHHHHHHHhCC------------CeEEEEeCcccccc----cCCCCCEEEEcCCCCCcchhhcCc
Confidence            358999998 8899999999988753            24555554543321    1347999883      1       


Q ss_pred             ecccCc--cc-------hHHHHHHHHHhcCCCeEEEEEEEecC----hhHHHHHHHHHHhcCeEEe
Q 032462           71 DVVYAE--HL-------LEPLLQTIFALSGPKTTILLGYEIRS----TSVHEQMLQMWKSNFNVKL  123 (140)
Q Consensus        71 DviY~~--~~-------~~~L~~tl~~ll~~~~~~~~~~~~R~----~~~~~~F~~~~~~~f~v~~  123 (140)
                      |+-|..  +.       ...++.....+++|+|.++.+.-.=.    ..+.+.|++.- .+|.+..
T Consensus       339 ~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~-~~~~~~~  403 (445)
T PRK14904        339 ELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRH-PEFSAEP  403 (445)
T ss_pred             chhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhC-CCCEEec
Confidence            122221  11       22467777777889988876553322    22345666521 1455443

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=95.16  E-value=0.37  Score=36.10  Aligned_cols=107  Identities=9%  Similarity=0.044  Sum_probs=67.2

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccc--cCCCccEEEEeecccCccchHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA--VAPPFDYIIGTDVVYAEHLLEP   81 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~--~~~~~D~IlasDviY~~~~~~~   81 (140)
                      ++|+..|. ++.+...++|++.|+.           ..++++..-+..+.-. ...  ...+||+|+. |.-  +.....
T Consensus        94 g~v~tiD~d~~~~~~A~~n~~~~gl-----------~~~i~~~~gda~~~L~~l~~~~~~~~fD~Vfi-Da~--k~~y~~  159 (234)
T PLN02781         94 GRITAIDIDKEAYEVGLEFIKKAGV-----------DHKINFIQSDALSALDQLLNNDPKPEFDFAFV-DAD--KPNYVH  159 (234)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEccHHHHHHHHHhCCCCCCCCEEEE-CCC--HHHHHH
Confidence            49999998 7899999999999875           2456666555543211 000  1358998865 332  244456


Q ss_pred             HHHHHHHhcCCCeEEEEEEEecC-----------------hhHHHHHHHHHH--hcCeEEeecC
Q 032462           82 LLQTIFALSGPKTTILLGYEIRS-----------------TSVHEQMLQMWK--SNFNVKLVPK  126 (140)
Q Consensus        82 L~~tl~~ll~~~~~~~~~~~~R~-----------------~~~~~~F~~~~~--~~f~v~~v~~  126 (140)
                      ++..+..+++|+|.+++-.....                 .....+|.+.+.  ..|....+|.
T Consensus       160 ~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~lp~  223 (234)
T PLN02781        160 FHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQISI  223 (234)
T ss_pred             HHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEEEe
Confidence            77777788899998876332211                 012457777663  3677666664

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=95.14  E-value=0.071  Score=39.21  Aligned_cols=73  Identities=18%  Similarity=0.108  Sum_probs=46.5

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL   82 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L   82 (140)
                      .+++|++-|. |+.+..|++|+++|+.           .+.+.+...|..+...    ...+|.||.--    +.....+
T Consensus       124 ~~~~V~A~d~Np~a~~~L~~Ni~lNkv-----------~~~i~~~~~D~~~~~~----~~~~drvim~l----p~~~~~f  184 (200)
T PF02475_consen  124 KAKRVYAVDLNPDAVEYLKENIRLNKV-----------ENRIEVINGDAREFLP----EGKFDRVIMNL----PESSLEF  184 (200)
T ss_dssp             -SSEEEEEES-HHHHHHHHHHHHHTT------------TTTEEEEES-GGG-------TT-EEEEEE------TSSGGGG
T ss_pred             CccEEEEecCCHHHHHHHHHHHHHcCC-----------CCeEEEEcCCHHHhcC----ccccCEEEECC----hHHHHHH
Confidence            4568999998 8999999999999975           3567777777654421    57899888743    3333345


Q ss_pred             HHHHHHhcCCCeE
Q 032462           83 LQTIFALSGPKTT   95 (140)
Q Consensus        83 ~~tl~~ll~~~~~   95 (140)
                      +.....+++++|.
T Consensus       185 l~~~~~~~~~~g~  197 (200)
T PF02475_consen  185 LDAALSLLKEGGI  197 (200)
T ss_dssp             HHHHHHHEEEEEE
T ss_pred             HHHHHHHhcCCcE
Confidence            5555556655544

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=95.01  E-value=0.067  Score=38.70  Aligned_cols=89  Identities=21%  Similarity=0.234  Sum_probs=57.8

Q ss_pred             CCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeecccCccc-h
Q 032462            4 LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHL-L   79 (140)
Q Consensus         4 lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~~~D~IlasDviY~~~~-~   79 (140)
                      .|| +|++-|. +..+..+++|++.-+..           ..+++..-|.-..-. ......+||+| -.|-=|.... .
T Consensus        63 RGA~~v~fVE~~~~a~~~i~~N~~~l~~~-----------~~~~v~~~d~~~~l~~~~~~~~~fDiI-flDPPY~~~~~~  130 (183)
T PF03602_consen   63 RGAKSVVFVEKNRKAIKIIKKNLEKLGLE-----------DKIRVIKGDAFKFLLKLAKKGEKFDII-FLDPPYAKGLYY  130 (183)
T ss_dssp             TT-SEEEEEES-HHHHHHHHHHHHHHT-G-----------GGEEEEESSHHHHHHHHHHCTS-EEEE-EE--STTSCHHH
T ss_pred             cCCCeEEEEECCHHHHHHHHHHHHHhCCC-----------cceeeeccCHHHHHHhhcccCCCceEE-EECCCcccchHH
Confidence            688 9999998 78999999999976542           233433333221110 11135789987 5688888887 4


Q ss_pred             HHHHHHHH--HhcCCCeEEEEEEEecC
Q 032462           80 EPLLQTIF--ALSGPKTTILLGYEIRS  104 (140)
Q Consensus        80 ~~L~~tl~--~ll~~~~~~~~~~~~R~  104 (140)
                      +.++..|.  .++++++.+++-+..+.
T Consensus       131 ~~~l~~l~~~~~l~~~~~ii~E~~~~~  157 (183)
T PF03602_consen  131 EELLELLAENNLLNEDGLIIIEHSKKE  157 (183)
T ss_dssp             HHHHHHHHHTTSEEEEEEEEEEEETTS
T ss_pred             HHHHHHHHHCCCCCCCEEEEEEecCCC
Confidence            88888887  56788888888777663

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.98  E-value=0.42  Score=39.23  Aligned_cols=104  Identities=13%  Similarity=0.081  Sum_probs=69.6

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc--
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--   77 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~--   77 (140)
                      ||+.+.+|+.++. ++.+...++|++.|+.            .++.+...+=.+..........+|.||.     +|-  
T Consensus       311 lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i------------~N~~f~~~~ae~~~~~~~~~~~~d~Vvv-----DPPR~  373 (432)
T COG2265         311 LAKRVKKVHGVEISPEAVEAAQENAAANGI------------DNVEFIAGDAEEFTPAWWEGYKPDVVVV-----DPPRA  373 (432)
T ss_pred             hcccCCEEEEEecCHHHHHHHHHHHHHcCC------------CcEEEEeCCHHHHhhhccccCCCCEEEE-----CCCCC
Confidence            5667779999998 8899999999999986            2355554332221110011346787763     442  


Q ss_pred             -chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeec
Q 032462           78 -LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVP  125 (140)
Q Consensus        78 -~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~  125 (140)
                       +-+.++++|.++. |...+|+++-   +.|..+.+..+ +.|+.++++-
T Consensus       374 G~~~~~lk~l~~~~-p~~IvYVSCN---P~TlaRDl~~L~~~gy~i~~v~  419 (432)
T COG2265         374 GADREVLKQLAKLK-PKRIVYVSCN---PATLARDLAILASTGYEIERVQ  419 (432)
T ss_pred             CCCHHHHHHHHhcC-CCcEEEEeCC---HHHHHHHHHHHHhCCeEEEEEE
Confidence             4457777776654 6678888875   66788888887 5688777763

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=94.85  E-value=0.41  Score=34.91  Aligned_cols=77  Identities=18%  Similarity=0.138  Sum_probs=50.7

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      +++|+..|. ++.+...++|+..++.           .+++++..-|-.+..  + ...+||.|+..-.+.      .+.
T Consensus        97 ~g~V~~iD~~~~~~~~a~~~l~~~~~-----------~~~v~~~~~d~~~~~--~-~~~~fD~Ii~~~~~~------~~~  156 (205)
T PRK13944         97 RGKVYTVEIVKELAIYAAQNIERLGY-----------WGVVEVYHGDGKRGL--E-KHAPFDAIIVTAAAS------TIP  156 (205)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCcEEEEECCcccCC--c-cCCCccEEEEccCcc------hhh
Confidence            359999998 7889999999987753           134555444432211  1 135899998775542      233


Q ss_pred             HHHHHhcCCCeEEEEEEE
Q 032462           84 QTIFALSGPKTTILLGYE  101 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~  101 (140)
                      ..+.+.++|+|.+++...
T Consensus       157 ~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        157 SALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             HHHHHhcCcCcEEEEEEc
Confidence            456667889999877654

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=94.82  E-value=0.43  Score=34.46  Aligned_cols=104  Identities=9%  Similarity=-0.025  Sum_probs=65.2

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe--ecccCccc---
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT--DVVYAEHL---   78 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas--DviY~~~~---   78 (140)
                      +++|+..|. ++.+..+++|+..++.            .++++..-+..+..........+|.|+..  |.-+....   
T Consensus        40 ~~~v~gvD~~~~~l~~a~~~~~~~~l------------~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~  107 (194)
T TIGR00091        40 DKNFLGIEIHTPIVLAANNKANKLGL------------KNLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKR  107 (194)
T ss_pred             CCCEEEEEeeHHHHHHHHHHHHHhCC------------CCEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCcccc
Confidence            458999998 7899999999887643            35555555543221100112368877653  33332211   


Q ss_pred             ---hHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHh--cCeEE
Q 032462           79 ---LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS--NFNVK  122 (140)
Q Consensus        79 ---~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~--~f~v~  122 (140)
                         .+.+++.+.++++|+|.+++....+..  ...+++.+++  +|+..
T Consensus       108 r~~~~~~l~~~~r~LkpgG~l~~~td~~~~--~~~~~~~~~~~~~f~~~  154 (194)
T TIGR00091       108 RITQPHFLKEYANVLKKGGVIHFKTDNEPL--FEDMLKVLSENDLFENT  154 (194)
T ss_pred             ccCCHHHHHHHHHHhCCCCEEEEEeCCHHH--HHHHHHHHHhCCCeEec
Confidence               267899999999999999988765542  4455666643  36544

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK04266 fibrillarin; Provisional

Probab=94.42  E-value=1.5  Score=32.68  Aligned_cols=103  Identities=17%  Similarity=0.130  Sum_probs=55.8

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      .+|+.-|. +..+..+.++++..              .++....-|=.++.........||+|+ +|.- ++.....++.
T Consensus        97 g~V~avD~~~~ml~~l~~~a~~~--------------~nv~~i~~D~~~~~~~~~l~~~~D~i~-~d~~-~p~~~~~~L~  160 (226)
T PRK04266         97 GVVYAVEFAPRPMRELLEVAEER--------------KNIIPILADARKPERYAHVVEKVDVIY-QDVA-QPNQAEIAID  160 (226)
T ss_pred             CeEEEEECCHHHHHHHHHHhhhc--------------CCcEEEECCCCCcchhhhccccCCEEE-ECCC-ChhHHHHHHH
Confidence            48999997 77888777776531              112222111111100011234589887 3422 1222334677


Q ss_pred             HHHHhcCCCeEEEEEEEecC-----hh--HHHHHHHHH-HhcCeEEee
Q 032462           85 TIFALSGPKTTILLGYEIRS-----TS--VHEQMLQMW-KSNFNVKLV  124 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R~-----~~--~~~~F~~~~-~~~f~v~~v  124 (140)
                      .+.++++|+|.++++-..|.     ..  ..+...+.+ +.||++.++
T Consensus       161 ~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~  208 (226)
T PRK04266        161 NAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEV  208 (226)
T ss_pred             HHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            88889999999998644333     11  122334455 459997654

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=94.38  E-value=0.52  Score=35.35  Aligned_cols=84  Identities=13%  Similarity=0.160  Sum_probs=54.4

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      ++|+..|. +++|...++.+.....            .+|+...   ++.+..+.....||.|..+=.+-+-.-.+..++
T Consensus        73 ~~v~~vD~s~~ML~~a~~k~~~~~~------------~~i~~v~---~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~  137 (233)
T PF01209_consen   73 GKVVGVDISPGMLEVARKKLKREGL------------QNIEFVQ---GDAEDLPFPDNSFDAVTCSFGLRNFPDRERALR  137 (233)
T ss_dssp             -EEEEEES-HHHHHHHHHHHHHTT--------------SEEEEE----BTTB--S-TT-EEEEEEES-GGG-SSHHHHHH
T ss_pred             cEEEEecCCHHHHHHHHHHHHhhCC------------CCeeEEE---cCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHH
Confidence            58999998 8899999988886543            2444444   333334444689999999888776555666777


Q ss_pred             HHHHhcCCCeEEEEEEEecC
Q 032462           85 TIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R~  104 (140)
                      -+.+.++|+|.+.+.--.+.
T Consensus       138 E~~RVLkPGG~l~ile~~~p  157 (233)
T PF01209_consen  138 EMYRVLKPGGRLVILEFSKP  157 (233)
T ss_dssp             HHHHHEEEEEEEEEEEEEB-
T ss_pred             HHHHHcCCCeEEEEeeccCC
Confidence            77788899998876544443

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=94.29  E-value=0.59  Score=37.20  Aligned_cols=56  Identities=23%  Similarity=0.206  Sum_probs=38.8

Q ss_pred             CccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe
Q 032462            1 MALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT   70 (140)
Q Consensus         1 lA~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas   70 (140)
                      +|+.|+ +|++.|. |+.+..|++|+++|+..           +.+....-|=.+.   ......+|-|+.-
T Consensus       206 ~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~-----------~~v~~i~gD~rev---~~~~~~aDrIim~  263 (341)
T COG2520         206 IAKKGRPKVYAIDINPDAVEYLKENIRLNKVE-----------GRVEPILGDAREV---APELGVADRIIMG  263 (341)
T ss_pred             hhhcCCceEEEEecCHHHHHHHHHHHHhcCcc-----------ceeeEEeccHHHh---hhccccCCEEEeC
Confidence            478898 5999998 99999999999999863           3344444333222   1112678887764

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.24  E-value=0.4  Score=37.61  Aligned_cols=84  Identities=18%  Similarity=0.113  Sum_probs=52.4

Q ss_pred             CccCCC-EEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            1 MALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         1 lA~lGa-~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      |+..|| .|+..|... +-.++-.+-.....         ....+...++-..+-   +. ...||+|++.=|+|.....
T Consensus       133 M~~~GA~~ViGiDP~~-lf~~QF~~i~~~lg---------~~~~~~~lplgvE~L---p~-~~~FDtVF~MGVLYHrr~P  198 (315)
T PF08003_consen  133 MLGRGAKSVIGIDPSP-LFYLQFEAIKHFLG---------QDPPVFELPLGVEDL---PN-LGAFDTVFSMGVLYHRRSP  198 (315)
T ss_pred             HhhcCCCEEEEECCCh-HHHHHHHHHHHHhC---------CCccEEEcCcchhhc---cc-cCCcCEEEEeeehhccCCH
Confidence            456788 799999632 22333333332221         112334444433332   33 5689999999999999888


Q ss_pred             HHHHHHHHHhcCCCeEEEE
Q 032462           80 EPLLQTIFALSGPKTTILL   98 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~   98 (140)
                      -..+..++..+.++|.+++
T Consensus       199 l~~L~~Lk~~L~~gGeLvL  217 (315)
T PF08003_consen  199 LDHLKQLKDSLRPGGELVL  217 (315)
T ss_pred             HHHHHHHHHhhCCCCEEEE
Confidence            8888888888877666653

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=94.12  E-value=0.46  Score=35.60  Aligned_cols=74  Identities=11%  Similarity=0.138  Sum_probs=50.3

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEE-EEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA-VELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~-~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L   82 (140)
                      |++|+..|. +.++...++++. |              ..+.. -...|.       ...+||+|+++.++..-.-...+
T Consensus        55 ~~~v~gvD~s~~~i~~a~~~~~-~--------------~~~~~~d~~~~~-------~~~~fD~v~~~~~l~~~~d~~~~  112 (258)
T PRK01683         55 AARITGIDSSPAMLAEARSRLP-D--------------CQFVEADIASWQ-------PPQALDLIFANASLQWLPDHLEL  112 (258)
T ss_pred             CCEEEEEECCHHHHHHHHHhCC-C--------------CeEEECchhccC-------CCCCccEEEEccChhhCCCHHHH
Confidence            569999998 778888877641 1              01110 001231       12489999999988655456678


Q ss_pred             HHHHHHhcCCCeEEEEEE
Q 032462           83 LQTIFALSGPKTTILLGY  100 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~  100 (140)
                      ++.+...++|+|.+++..
T Consensus       113 l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683        113 FPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             HHHHHHhcCCCcEEEEEC
Confidence            888888999999988754

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=94.10  E-value=0.74  Score=37.66  Aligned_cols=86  Identities=16%  Similarity=0.152  Sum_probs=53.4

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEE----e---------
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIG----T---------   70 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ila----s---------   70 (140)
                      +++|++.|. +..+..+++|++..+.            .++++..-|+.+...  .....||.|+.    |         
T Consensus       262 ~g~V~a~Dis~~rl~~~~~n~~r~g~------------~~v~~~~~Da~~l~~--~~~~~fD~Vl~DaPCsg~G~~~~~p  327 (431)
T PRK14903        262 QGKILAVDISREKIQLVEKHAKRLKL------------SSIEIKIADAERLTE--YVQDTFDRILVDAPCTSLGTARNHP  327 (431)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCC------------CeEEEEECchhhhhh--hhhccCCEEEECCCCCCCccccCCh
Confidence            469999998 8899999999987653            246666666554321  12457999885    1         


Q ss_pred             ecccCc--c-------chHHHHHHHHHhcCCCeEEEEEEEecC
Q 032462           71 DVVYAE--H-------LLEPLLQTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        71 DviY~~--~-------~~~~L~~tl~~ll~~~~~~~~~~~~R~  104 (140)
                      |+.|..  +       .-..++.....+++|+|.++.+.-.-.
T Consensus       328 ~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~  370 (431)
T PRK14903        328 EVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT  370 (431)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            111111  0       123345556667789888766555444

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=94.02  E-value=0.24  Score=37.26  Aligned_cols=72  Identities=17%  Similarity=0.175  Sum_probs=49.1

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      |++|+..|. +.++...+++   |                +.+..   ++-.... ...+||+|+++.++..-...+.++
T Consensus        53 ~~~v~gvD~s~~~~~~a~~~---~----------------~~~~~---~d~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l  109 (255)
T PRK14103         53 GAVIEALDSSPEMVAAARER---G----------------VDART---GDVRDWK-PKPDTDVVVSNAALQWVPEHADLL  109 (255)
T ss_pred             CCEEEEEECCHHHHHHHHhc---C----------------CcEEE---cChhhCC-CCCCceEEEEehhhhhCCCHHHHH
Confidence            679999998 7777776542   1                11111   1111111 135899999999987755567788


Q ss_pred             HHHHHhcCCCeEEEEE
Q 032462           84 QTIFALSGPKTTILLG   99 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~   99 (140)
                      +-+.+.++|+|.+++.
T Consensus       110 ~~~~~~LkpgG~l~~~  125 (255)
T PRK14103        110 VRWVDELAPGSWIAVQ  125 (255)
T ss_pred             HHHHHhCCCCcEEEEE
Confidence            8888889999998875

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=93.96  E-value=0.54  Score=34.54  Aligned_cols=74  Identities=12%  Similarity=0.134  Sum_probs=46.7

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      ++|+.-|. ++++...++|++.++.            .++++..   ++.........+||+|+..-.+      +.+..
T Consensus       102 ~~V~~vE~~~~~~~~a~~~l~~~g~------------~~v~~~~---gd~~~~~~~~~~fD~I~~~~~~------~~~~~  160 (212)
T PRK13942        102 GKVVTIERIPELAEKAKKTLKKLGY------------DNVEVIV---GDGTLGYEENAPYDRIYVTAAG------PDIPK  160 (212)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCC------------CCeEEEE---CCcccCCCcCCCcCEEEECCCc------ccchH
Confidence            58999997 8899999999987643            2333333   3221111124689999864322      23334


Q ss_pred             HHHHhcCCCeEEEEEE
Q 032462           85 TIFALSGPKTTILLGY  100 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~  100 (140)
                      .+...++|+|++++..
T Consensus       161 ~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        161 PLIEQLKDGGIMVIPV  176 (212)
T ss_pred             HHHHhhCCCcEEEEEE
Confidence            5666788999987753

>PRK00811 spermidine synthase; Provisional

Probab=93.91  E-value=1  Score=34.73  Aligned_cols=105  Identities=10%  Similarity=-0.006  Sum_probs=60.3

Q ss_pred             CC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc-----
Q 032462            5 GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----   77 (140)
Q Consensus         5 Ga-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~-----   77 (140)
                      +. +|++-|. +++++..++++.......       ...+++++..-|-.+-  .+....+||+|+. |+ +++.     
T Consensus        99 ~~~~V~~VEid~~vv~~a~~~~~~~~~~~-------~~d~rv~v~~~Da~~~--l~~~~~~yDvIi~-D~-~dp~~~~~~  167 (283)
T PRK00811         99 SVEKITLVEIDERVVEVCRKYLPEIAGGA-------YDDPRVELVIGDGIKF--VAETENSFDVIIV-DS-TDPVGPAEG  167 (283)
T ss_pred             CCCEEEEEeCCHHHHHHHHHHhHHhcccc-------ccCCceEEEECchHHH--HhhCCCcccEEEE-CC-CCCCCchhh
Confidence            54 8999998 789999999876432111       0134555443332111  1123568999995 54 2221     


Q ss_pred             -chHHHHHHHHHhcCCCeEEEEEEEe--cChhHHHHHHHHHHhcCe
Q 032462           78 -LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFN  120 (140)
Q Consensus        78 -~~~~L~~tl~~ll~~~~~~~~~~~~--R~~~~~~~F~~~~~~~f~  120 (140)
                       .-..+++.+++.|+|+|.+.+-...  ..........+.+++-|.
T Consensus       168 l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~  213 (283)
T PRK00811        168 LFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFP  213 (283)
T ss_pred             hhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCC
Confidence             1256677888889999987763221  222334444555555565

>PLN03075 nicotianamine synthase; Provisional

Probab=93.88  E-value=0.83  Score=35.67  Aligned_cols=84  Identities=11%  Similarity=0.033  Sum_probs=63.9

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC-ccchHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-EHLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~-~~~~~~L   82 (140)
                      +++++-.|. ++.+...|++++....          -...+++...|-.+...   ...+||+|...=++|. .+.....
T Consensus       149 ~~~~~giD~d~~ai~~Ar~~~~~~~g----------L~~rV~F~~~Da~~~~~---~l~~FDlVF~~ALi~~dk~~k~~v  215 (296)
T PLN03075        149 TTSFHNFDIDPSANDVARRLVSSDPD----------LSKRMFFHTADVMDVTE---SLKEYDVVFLAALVGMDKEEKVKV  215 (296)
T ss_pred             CCEEEEEeCCHHHHHHHHHHhhhccC----------ccCCcEEEECchhhccc---ccCCcCEEEEecccccccccHHHH
Confidence            458999998 7899999988865221          13568888777765321   1468999999966787 4788889


Q ss_pred             HHHHHHhcCCCeEEEEEEE
Q 032462           83 LQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~  101 (140)
                      ++-+...++|+|.+++...
T Consensus       216 L~~l~~~LkPGG~Lvlr~~  234 (296)
T PLN03075        216 IEHLGKHMAPGALLMLRSA  234 (296)
T ss_pred             HHHHHHhcCCCcEEEEecc
Confidence            9999999999999998763

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=93.81  E-value=0.34  Score=39.77  Aligned_cols=83  Identities=17%  Similarity=0.106  Sum_probs=54.4

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cc
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HL   78 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~   78 (140)
                      |..+.+|+..|. +..+..   |...|..           ..++.+...+..+.. .+....+||+|++..+++.=  ..
T Consensus        56 a~~~~~v~giD~s~~~l~~---a~~~~~~-----------~~~i~~~~~d~~~~~-~~~~~~~fD~I~~~~~l~~l~~~~  120 (475)
T PLN02336         56 AKKAGQVIALDFIESVIKK---NESINGH-----------YKNVKFMCADVTSPD-LNISDGSVDLIFSNWLLMYLSDKE  120 (475)
T ss_pred             HhhCCEEEEEeCCHHHHHH---HHHHhcc-----------CCceEEEEecccccc-cCCCCCCEEEEehhhhHHhCCHHH
Confidence            455679999998 666543   3333321           235566666654321 12224689999999988753  33


Q ss_pred             hHHHHHHHHHhcCCCeEEEEE
Q 032462           79 LEPLLQTIFALSGPKTTILLG   99 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~   99 (140)
                      ...+++-+...++|+|.+++.
T Consensus       121 ~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336        121 VENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             HHHHHHHHHHhcCCCeEEEEE
Confidence            677888888889999998763

>TIGR00417 speE spermidine synthase

Probab=93.67  E-value=0.87  Score=34.71  Aligned_cols=103  Identities=12%  Similarity=0.013  Sum_probs=58.5

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeecccCcc-----c
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEH-----L   78 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~~~D~IlasDviY~~~-----~   78 (140)
                      .+|++.|. ++++...++++.......        ..+++++..   ++... ......+||+||. |......     .
T Consensus        97 ~~v~~veid~~vi~~a~~~~~~~~~~~--------~~~~v~i~~---~D~~~~l~~~~~~yDvIi~-D~~~~~~~~~~l~  164 (270)
T TIGR00417        97 EKATLVDIDEKVIELSKKFLPSLAGSY--------DDPRVDLQI---DDGFKFLADTENTFDVIIV-DSTDPVGPAETLF  164 (270)
T ss_pred             ceEEEEeCCHHHHHHHHHHhHhhcccc--------cCCceEEEE---CchHHHHHhCCCCccEEEE-eCCCCCCcccchh
Confidence            38999998 779999999875432211        124455544   22211 1122468999985 5542111     1


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEecC--hhHHHHHHHHHHhcCe
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEIRS--TSVHEQMLQMWKSNFN  120 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~R~--~~~~~~F~~~~~~~f~  120 (140)
                      ...+++.++++++|+|.+++....-.  ........+.+++.|.
T Consensus       165 ~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~  208 (270)
T TIGR00417       165 TKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFP  208 (270)
T ss_pred             HHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCC
Confidence            35667788888999999887533211  2223333444555555

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=93.62  E-value=0.33  Score=36.12  Aligned_cols=76  Identities=16%  Similarity=0.098  Sum_probs=59.4

Q ss_pred             CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--ccchHHH
Q 032462            5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--~~~~~~L   82 (140)
                      +.++++=|+|++++..+.      .            .+|+..+-|.-++  .|   . +|+|+.+-|+.+  ++....+
T Consensus       124 ~l~~~v~Dlp~v~~~~~~------~------------~rv~~~~gd~f~~--~P---~-~D~~~l~~vLh~~~d~~~~~i  179 (241)
T PF00891_consen  124 NLRATVFDLPEVIEQAKE------A------------DRVEFVPGDFFDP--LP---V-ADVYLLRHVLHDWSDEDCVKI  179 (241)
T ss_dssp             TSEEEEEE-HHHHCCHHH------T------------TTEEEEES-TTTC--CS---S-ESEEEEESSGGGS-HHHHHHH
T ss_pred             CCcceeeccHhhhhcccc------c------------cccccccccHHhh--hc---c-ccceeeehhhhhcchHHHHHH
Confidence            568999999999988877      1            6789999998833  22   2 999999999966  4677888


Q ss_pred             HHHHHHhcCCC--eEEEEEEEecC
Q 032462           83 LQTIFALSGPK--TTILLGYEIRS  104 (140)
Q Consensus        83 ~~tl~~ll~~~--~~~~~~~~~R~  104 (140)
                      ++-+...+.|+  |+++|.-....
T Consensus       180 L~~~~~al~pg~~g~llI~e~~~~  203 (241)
T PF00891_consen  180 LRNAAAALKPGKDGRLLIIEMVLP  203 (241)
T ss_dssp             HHHHHHHSEECTTEEEEEEEEEEC
T ss_pred             HHHHHHHhCCCCCCeEEEEeeccC
Confidence            88888889977  99998877743

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=93.48  E-value=1  Score=31.57  Aligned_cols=79  Identities=11%  Similarity=0.027  Sum_probs=49.6

Q ss_pred             ecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHHHHHHh
Q 032462           11 TDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFAL   89 (140)
Q Consensus        11 TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~tl~~l   89 (140)
                      .|. ++++...+++.......         ...++++..   ++....+.....||+|+.+-++-+-.-....++-+.+.
T Consensus         3 vD~S~~ML~~A~~~~~~~~~~---------~~~~i~~~~---~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rv   70 (160)
T PLN02232          3 LDFSSEQLAVAATRQSLKARS---------CYKCIEWIE---GDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRV   70 (160)
T ss_pred             EcCCHHHHHHHHHhhhccccc---------CCCceEEEE---echhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHH
Confidence            465 67788776655432110         012344333   33333444456899999998876655566777888889


Q ss_pred             cCCCeEEEEEEE
Q 032462           90 SGPKTTILLGYE  101 (140)
Q Consensus        90 l~~~~~~~~~~~  101 (140)
                      ++|+|.+++..-
T Consensus        71 LkpGG~l~i~d~   82 (160)
T PLN02232         71 LKPGSRVSILDF   82 (160)
T ss_pred             cCcCeEEEEEEC
Confidence            999999876643

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=93.27  E-value=0.7  Score=35.85  Aligned_cols=80  Identities=18%  Similarity=0.296  Sum_probs=63.7

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--ccchHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEP   81 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--~~~~~~   81 (140)
                      |++|+-.++ ++-....++=++.-+.           ..++++..-||.+..+      +||-|+..+.+=.  .+..+.
T Consensus        95 ~v~V~GvTlS~~Q~~~~~~r~~~~gl-----------~~~v~v~l~d~rd~~e------~fDrIvSvgmfEhvg~~~~~~  157 (283)
T COG2230          95 GVTVVGVTLSEEQLAYAEKRIAARGL-----------EDNVEVRLQDYRDFEE------PFDRIVSVGMFEHVGKENYDD  157 (283)
T ss_pred             CCEEEEeeCCHHHHHHHHHHHHHcCC-----------CcccEEEecccccccc------ccceeeehhhHHHhCcccHHH
Confidence            889999998 6777888776665543           3689999999987743      4999999997643  467999


Q ss_pred             HHHHHHHhcCCCeEEEEEEE
Q 032462           82 LLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        82 L~~tl~~ll~~~~~~~~~~~  101 (140)
                      +++.+..++.|+|.+++-.-
T Consensus       158 ff~~~~~~L~~~G~~llh~I  177 (283)
T COG2230         158 FFKKVYALLKPGGRMLLHSI  177 (283)
T ss_pred             HHHHHHhhcCCCceEEEEEe
Confidence            99999999999998875333

>KOG2497 consensus Predicted methyltransferase [General function prediction only]

Probab=93.17  E-value=0.048  Score=41.77  Aligned_cols=28  Identities=36%  Similarity=0.497  Sum_probs=23.9

Q ss_pred             CCccEEEEeecccCccchHHHHHHHHHhc
Q 032462           62 PPFDYIIGTDVVYAEHLLEPLLQTIFALS   90 (140)
Q Consensus        62 ~~~D~IlasDviY~~~~~~~L~~tl~~ll   90 (140)
                      ..+|+|+|||++|+ ....+++.++..++
T Consensus       163 ~~~dll~~AdV~yd-~~~~~~~~~~~~lL  190 (262)
T KOG2497|consen  163 EFTDLLGGADVIYD-TELRHLLETLMTLL  190 (262)
T ss_pred             chhhheeccCeeeh-hhhhHHHHHHHHHH
Confidence            34999999999999 88888888888765

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=93.09  E-value=2  Score=34.96  Aligned_cols=97  Identities=19%  Similarity=0.169  Sum_probs=54.9

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEE------eecccC-cc
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIG------TDVVYA-EH   77 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ila------sDviY~-~~   77 (140)
                      ++|+..|. +..+..+++|++.++..           ..+....-+....... .....||.|+.      +-++-. ++
T Consensus       263 ~~v~a~D~~~~~l~~~~~n~~r~g~~-----------~~v~~~~~d~~~~~~~-~~~~~fD~VllDaPcSg~G~~~~~p~  330 (426)
T TIGR00563       263 AQVVALDIHEHRLKRVYENLKRLGLT-----------IKAETKDGDGRGPSQW-AENEQFDRILLDAPCSATGVIRRHPD  330 (426)
T ss_pred             CeEEEEeCCHHHHHHHHHHHHHcCCC-----------eEEEEecccccccccc-ccccccCEEEEcCCCCCCcccccCcc
Confidence            69999997 88999999999987641           1222232222211100 12357998883      222221 11


Q ss_pred             ---------------chHHHHHHHHHhcCCCeEEEEE-EEec---ChhHHHHHHHH
Q 032462           78 ---------------LLEPLLQTIFALSGPKTTILLG-YEIR---STSVHEQMLQM  114 (140)
Q Consensus        78 ---------------~~~~L~~tl~~ll~~~~~~~~~-~~~R---~~~~~~~F~~~  114 (140)
                                     .-..++.....+++|+|.++.+ ...-   +..+.+.|++.
T Consensus       331 ~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~  386 (426)
T TIGR00563       331 IKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQE  386 (426)
T ss_pred             hhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHh
Confidence                           1245666666778898887654 3332   33445667753

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=92.77  E-value=1.3  Score=33.62  Aligned_cols=93  Identities=16%  Similarity=0.210  Sum_probs=54.3

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEE----ee--cc-----
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIG----TD--VV-----   73 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ila----sD--vi-----   73 (140)
                      ..|+..|. +..+..+++|++.++.            .++++..-|....   +.....||.|+.    |.  ++     
T Consensus        97 g~v~a~D~~~~~l~~~~~n~~~~g~------------~~v~~~~~D~~~~---~~~~~~fD~Vl~D~Pcsg~G~~~~~p~  161 (264)
T TIGR00446        97 GAIVANEFSKSRTKVLIANINRCGV------------LNVAVTNFDGRVF---GAAVPKFDAILLDAPCSGEGVIRKDPS  161 (264)
T ss_pred             CEEEEEcCCHHHHHHHHHHHHHcCC------------CcEEEecCCHHHh---hhhccCCCEEEEcCCCCCCcccccChh
Confidence            48999997 8899999999999864            2455555443221   112345998874    21  11     


Q ss_pred             ----cCccc-------hHHHHHHHHHhcCCCeEEEEEEEecCh----hHHHHHHH
Q 032462           74 ----YAEHL-------LEPLLQTIFALSGPKTTILLGYEIRST----SVHEQMLQ  113 (140)
Q Consensus        74 ----Y~~~~-------~~~L~~tl~~ll~~~~~~~~~~~~R~~----~~~~~F~~  113 (140)
                          +.++.       ...+++....+++|+|.++.+.-.-..    .+.+.|++
T Consensus       162 ~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~  216 (264)
T TIGR00446       162 RKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLE  216 (264)
T ss_pred             hhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHH
Confidence                11111       233555666677898887655443333    23445554

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=92.63  E-value=0.67  Score=34.75  Aligned_cols=124  Identities=18%  Similarity=0.161  Sum_probs=68.0

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhccc--cc-CCCCCCCCCceEEEEeecCCCccccccCCCccEE--EEeeccc
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRI--SQ-MNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYI--IGTDVVY   74 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~--~~-~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~I--lasDviY   74 (140)
                      ||.+|.+|+.-|+ +..+....+   .|....  .. ..........+.+..-|.-+....+....+||.|  -++=|-.
T Consensus        61 LA~~G~~V~GvDlS~~Ai~~~~~---e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al  137 (226)
T PRK13256         61 FLSKGVKVIGIELSEKAVLSFFS---QNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIAL  137 (226)
T ss_pred             HHhCCCcEEEEecCHHHHHHHHH---HcCCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcC
Confidence            6789999999998 666665533   111100  00 0000011234555555544432111123578873  3555556


Q ss_pred             CccchHHHHHHHHHhcCCCeEEE-EEEEecC--h----hH-HHHHHHHHHhcCeEEeecCC
Q 032462           75 AEHLLEPLLQTIFALSGPKTTIL-LGYEIRS--T----SV-HEQMLQMWKSNFNVKLVPKA  127 (140)
Q Consensus        75 ~~~~~~~L~~tl~~ll~~~~~~~-~~~~~R~--~----~~-~~~F~~~~~~~f~v~~v~~~  127 (140)
                      .++....-++.|..+++|+|.++ +....-.  .    .+ .+...+..+..|.++.+...
T Consensus       138 pp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~~l~~~  198 (226)
T PRK13256        138 PNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSAKIKFELIDSK  198 (226)
T ss_pred             CHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccCCceEEEeeec
Confidence            67788888999999999987765 4443211  1    11 23333444778888887653

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=92.60  E-value=1.1  Score=32.86  Aligned_cols=109  Identities=17%  Similarity=0.241  Sum_probs=67.8

Q ss_pred             ccCCC--EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEee---cccC
Q 032462            2 ALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTD---VVYA   75 (140)
Q Consensus         2 A~lGa--~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasD---viY~   75 (140)
                      |.-|.  +.+=+|+ +..+.+.+.-.++++.           .+.|+.+++|-.++.   ....+||+|+---   -|=-
T Consensus        86 ~~egf~~~L~GvDYs~~AV~LA~niAe~~~~-----------~n~I~f~q~DI~~~~---~~~~qfdlvlDKGT~DAisL  151 (227)
T KOG1271|consen   86 AKEGFQSKLTGVDYSEKAVELAQNIAERDGF-----------SNEIRFQQLDITDPD---FLSGQFDLVLDKGTLDAISL  151 (227)
T ss_pred             HHhcCCCCccccccCHHHHHHHHHHHHhcCC-----------CcceeEEEeeccCCc---ccccceeEEeecCceeeeec
Confidence            44454  4778898 6677774444444543           355999999998773   3456777776321   1111


Q ss_pred             c-c----chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeE-EeecCC
Q 032462           76 E-H----LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNV-KLVPKA  127 (140)
Q Consensus        76 ~-~----~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v-~~v~~~  127 (140)
                      . +    -...-+.++..+++|+|.++|..-...   .++..+.++ .+|++ ..||..
T Consensus       152 s~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T---~dELv~~f~~~~f~~~~tvp~p  207 (227)
T KOG1271|consen  152 SPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT---KDELVEEFENFNFEYLSTVPTP  207 (227)
T ss_pred             CCCCcccceeeehhhHhhccCCCcEEEEEecCcc---HHHHHHHHhcCCeEEEEeeccc
Confidence            0 0    113357788899999999988766443   456677774 46874 456654

>PLN02672 methionine S-methyltransferase

Probab=92.57  E-value=2.2  Score=38.95  Aligned_cols=119  Identities=16%  Similarity=0.182  Sum_probs=69.8

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCC----CCCCCCCceEEEEeecCCCccccccCCCccEEEEe-------e--
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN----PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT-------D--   71 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~----~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas-------D--   71 (140)
                      ++|+++|. ++.+...++|++.|...-.+..    .......++++..-||-+..  .....+||+||+.       |  
T Consensus       143 ~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~--~~~~~~fDlIVSNPPYI~~~e~~  220 (1082)
T PLN02672        143 SKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC--RDNNIELDRIVGCIPQILNPNPE  220 (1082)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc--cccCCceEEEEECCCcCCCcchh
Confidence            58999998 8899999999999864210000    00001246888888886542  1112368888863       1  


Q ss_pred             -----cc-cCc-------c----------------chHHHHHHHHHhcCCCeEEEEEEEecChhHHH-HHHHHHHhcCeE
Q 032462           72 -----VV-YAE-------H----------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHE-QMLQMWKSNFNV  121 (140)
Q Consensus        72 -----vi-Y~~-------~----------------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~-~F~~~~~~~f~v  121 (140)
                           +. |++       +                .+..++......++|+|.+++-...+..+... +.++  +.||..
T Consensus       221 ~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~--~~gf~~  298 (1082)
T PLN02672        221 AMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFE--RRGFRI  298 (1082)
T ss_pred             hcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHH--HCCCCe
Confidence                 11 221       0                12345555556788999998877777654333 3443  357876


Q ss_pred             EeecCCC
Q 032462          122 KLVPKAK  128 (140)
Q Consensus       122 ~~v~~~~  128 (140)
                      .++-..+
T Consensus       299 ~~~~~~~  305 (1082)
T PLN02672        299 TKLWQTK  305 (1082)
T ss_pred             eEEeeeh
Confidence            6554433

>PLN02823 spermine synthase

Probab=92.55  E-value=0.96  Score=35.90  Aligned_cols=101  Identities=13%  Similarity=0.189  Sum_probs=59.8

Q ss_pred             EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeecccCcc-------
Q 032462            7 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEH-------   77 (140)
Q Consensus         7 ~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~~~D~IlasDviY~~~-------   77 (140)
                      +|++-|. +++++..+++...|....        ..+++++..   ++.-. ......+||+|+ .|+ .++.       
T Consensus       129 ~v~~VEiD~~vv~lar~~~~~~~~~~--------~dprv~v~~---~Da~~~L~~~~~~yDvIi-~D~-~dp~~~~~~~~  195 (336)
T PLN02823        129 KVVMCDIDQEVVDFCRKHLTVNREAF--------CDKRLELII---NDARAELEKRDEKFDVII-GDL-ADPVEGGPCYQ  195 (336)
T ss_pred             eEEEEECCHHHHHHHHHhcccccccc--------cCCceEEEE---ChhHHHHhhCCCCccEEE-ecC-CCccccCcchh
Confidence            8999999 789999999987664322        124444443   21111 112346899999 564 3431       


Q ss_pred             -chHHHHH-HHHHhcCCCeEEEEEEEe----cChhHHHHHHHHHHhcCe
Q 032462           78 -LLEPLLQ-TIFALSGPKTTILLGYEI----RSTSVHEQMLQMWKSNFN  120 (140)
Q Consensus        78 -~~~~L~~-tl~~ll~~~~~~~~~~~~----R~~~~~~~F~~~~~~~f~  120 (140)
                       .-..+.+ .++..|+|+|.+.+-...    +........++.+++.|.
T Consensus       196 Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~  244 (336)
T PLN02823        196 LYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFK  244 (336)
T ss_pred             hccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCC
Confidence             1234565 778899999987653322    223334455566666665

>PTZ00146 fibrillarin; Provisional

Probab=92.55  E-value=4.1  Score=31.81  Aligned_cols=67  Identities=10%  Similarity=0.039  Sum_probs=42.7

Q ss_pred             CCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEEEEecChh----HHHHHH---HHHH-hcCeE-EeecCCCCC
Q 032462           62 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS----VHEQML---QMWK-SNFNV-KLVPKAKES  130 (140)
Q Consensus        62 ~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~----~~~~F~---~~~~-~~f~v-~~v~~~~l~  130 (140)
                      ..+|+|+. |+ ..++....++..+..+|+|++.+++..+.|...    ..+.|-   +.++ .+|+. +.+..+..+
T Consensus       201 ~~vDvV~~-Dv-a~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~  276 (293)
T PTZ00146        201 PMVDVIFA-DV-AQPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFE  276 (293)
T ss_pred             CCCCEEEE-eC-CCcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCcc
Confidence            46899965 44 356666677777888999999999977766532    123343   3354 48984 444444333

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=92.54  E-value=1.2  Score=36.22  Aligned_cols=81  Identities=20%  Similarity=0.283  Sum_probs=48.7

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEE----Ee--ec------
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYII----GT--DV------   72 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Il----as--Dv------   72 (140)
                      ++|+..|. +..+..+++|++.++..             +.+..-|-.+.... ....+||.|+    ++  -+      
T Consensus       269 ~~v~a~D~s~~~l~~~~~n~~~~g~~-------------~~~~~~D~~~~~~~-~~~~~fD~Vl~D~Pcs~~G~~~~~p~  334 (427)
T PRK10901        269 AQVVALDIDAQRLERVRENLQRLGLK-------------ATVIVGDARDPAQW-WDGQPFDRILLDAPCSATGVIRRHPD  334 (427)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCC-------------eEEEEcCcccchhh-cccCCCCEEEECCCCCcccccccCcc
Confidence            59999998 88999999999887631             23333232221110 1135799888    22  11      


Q ss_pred             -ccCc--c-------chHHHHHHHHHhcCCCeEEEEEE
Q 032462           73 -VYAE--H-------LLEPLLQTIFALSGPKTTILLGY  100 (140)
Q Consensus        73 -iY~~--~-------~~~~L~~tl~~ll~~~~~~~~~~  100 (140)
                       -|..  +       ....++....++++|+|.++++.
T Consensus       335 ~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst  372 (427)
T PRK10901        335 IKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT  372 (427)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence             1211  1       12356777777889999887654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=92.38  E-value=0.26  Score=37.42  Aligned_cols=68  Identities=22%  Similarity=0.245  Sum_probs=50.6

Q ss_pred             CCCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEEEE-------------ecChhHHHHHHHH-H-HhcCeEEeec
Q 032462           61 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE-------------IRSTSVHEQMLQM-W-KSNFNVKLVP  125 (140)
Q Consensus        61 ~~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~-------------~R~~~~~~~F~~~-~-~~~f~v~~v~  125 (140)
                      ..+||+|.++||+=.=-..++++.....+++|+|.+.++.+             .|... -+.++.. + ..||++-.+.
T Consensus       186 ~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH-~~~YVr~~l~~~Gl~~i~~~  264 (287)
T COG4976         186 QERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAH-SESYVRALLAASGLEVIAIE  264 (287)
T ss_pred             CCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhcc-chHHHHHHHHhcCceEEEee
Confidence            67999999999998888889999999999998888777665             23332 2345544 4 4699987776


Q ss_pred             CCCC
Q 032462          126 KAKE  129 (140)
Q Consensus       126 ~~~l  129 (140)
                      ...+
T Consensus       265 ~tti  268 (287)
T COG4976         265 DTTI  268 (287)
T ss_pred             cccc
Confidence            5444

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=92.10  E-value=1.3  Score=35.16  Aligned_cols=103  Identities=12%  Similarity=0.036  Sum_probs=59.4

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccc----------c---ccCCCccEE
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI----------K---AVAPPFDYI   67 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~----------~---~~~~~~D~I   67 (140)
                      |+...+|+..|. ++.+..+++|++.|+.            .++++..-|..+....          .   ....+||+|
T Consensus       216 a~~~~~v~~vE~~~~av~~a~~n~~~~~~------------~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v  283 (353)
T TIGR02143       216 AQNFRRVLATEIAKPSVNAAQYNIAANNI------------DNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTI  283 (353)
T ss_pred             HHhCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEEcCHHHHHHHHhhccccccccccccccCCCCEE
Confidence            333458999997 8899999999999974            2355554444321110          0   001236776


Q ss_pred             EEeecccCccchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEee
Q 032462           68 IGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLV  124 (140)
Q Consensus        68 lasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~v  124 (140)
                      +. |-= .....+.++..|   .++++.+|+++....   ..+=+..+.++|.++.+
T Consensus       284 ~l-DPP-R~G~~~~~l~~l---~~~~~ivYvsC~p~t---laRDl~~L~~~Y~l~~v  332 (353)
T TIGR02143       284 FV-DPP-RAGLDPDTCKLV---QAYERILYISCNPET---LKANLEQLSETHRVERF  332 (353)
T ss_pred             EE-CCC-CCCCcHHHHHHH---HcCCcEEEEEcCHHH---HHHHHHHHhcCcEEEEE
Confidence            55 333 123455555555   447899999877543   22223333345887776

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=92.08  E-value=2.6  Score=33.01  Aligned_cols=82  Identities=16%  Similarity=0.154  Sum_probs=54.2

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc-c----h
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-L----L   79 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~-~----~   79 (140)
                      ++|+++|. .-.++..|+|+..|...           +.    ...+++.-  .....+||.||.-=-+-... .    .
T Consensus       183 ~~vtmvDvn~~Av~~ar~Nl~~N~~~-----------~~----~v~~s~~~--~~v~~kfd~IisNPPfh~G~~v~~~~~  245 (300)
T COG2813         183 AKLTLVDVNARAVESARKNLAANGVE-----------NT----EVWASNLY--EPVEGKFDLIISNPPFHAGKAVVHSLA  245 (300)
T ss_pred             CeEEEEecCHHHHHHHHHhHHHcCCC-----------cc----EEEEeccc--ccccccccEEEeCCCccCCcchhHHHH
Confidence            48999998 66899999999999862           11    22222221  12234899998755554432 2    2


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEecCh
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIRST  105 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R~~  105 (140)
                      ..++..-...|.++|..+|... |..
T Consensus       246 ~~~i~~A~~~L~~gGeL~iVan-~~l  270 (300)
T COG2813         246 QEIIAAAARHLKPGGELWIVAN-RHL  270 (300)
T ss_pred             HHHHHHHHHhhccCCEEEEEEc-CCC
Confidence            2566666777889999987766 543

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=91.83  E-value=0.33  Score=37.69  Aligned_cols=96  Identities=23%  Similarity=0.349  Sum_probs=61.0

Q ss_pred             CEEEEecc-hhHHHHHHHHHHH-----hhcc------ccc-CCC--C-----CCCCCceEEEEeecCCCccccccCCCcc
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEW-----NTSR------ISQ-MNP--G-----SDLLGSIQAVELDWGNEDHIKAVAPPFD   65 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~-----N~~~------~~~-~~~--~-----~~~~~~v~~~~LdWg~~~~~~~~~~~~D   65 (140)
                      .+|+.||. +.+|...++.+=-     +.+.      +.. ..+  +     ..-...|....++=.+++. + ...+||
T Consensus       148 ~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~-~-~~~~fD  225 (287)
T PRK10611        148 WKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQW-A-VPGPFD  225 (287)
T ss_pred             cEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCC-c-cCCCcc
Confidence            48999998 6788877765311     1000      000 000  0     0123456666666655321 1 146899


Q ss_pred             EEEEeecc-c-CccchHHHHHHHHHhcCCCeEEEEEEEec
Q 032462           66 YIIGTDVV-Y-AEHLLEPLLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        66 ~IlasDvi-Y-~~~~~~~L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      +|++-.++ | +++....+++.+...++|+|.+++++...
T Consensus       226 ~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sEs  265 (287)
T PRK10611        226 AIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSEN  265 (287)
T ss_pred             eeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCccc
Confidence            99997775 3 45688999999999999999999987644

>PRK03612 spermidine synthase; Provisional

Probab=91.07  E-value=2  Score=35.99  Aligned_cols=106  Identities=10%  Similarity=0.055  Sum_probs=60.6

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeecccCcc------
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEH------   77 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~~~D~IlasDviY~~~------   77 (140)
                      .+|++-|. +++++..++|...+......     -..+++++..   ++... ......+||+|+. |.-....      
T Consensus       322 ~~v~~VEid~~vi~~ar~~~~l~~~~~~~-----~~dprv~vi~---~Da~~~l~~~~~~fDvIi~-D~~~~~~~~~~~L  392 (521)
T PRK03612        322 EQVTLVDLDPAMTELARTSPALRALNGGA-----LDDPRVTVVN---DDAFNWLRKLAEKFDVIIV-DLPDPSNPALGKL  392 (521)
T ss_pred             CeEEEEECCHHHHHHHHhCCcchhhhccc-----cCCCceEEEE---ChHHHHHHhCCCCCCEEEE-eCCCCCCcchhcc
Confidence            48999998 88999999975443221000     0124454432   22211 1123468999987 5432210      


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEEEec--ChhHHHHHHHHHHh-cCe
Q 032462           78 LLEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKS-NFN  120 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~~~R--~~~~~~~F~~~~~~-~f~  120 (140)
                      .-..+.+.+++.++|+|.+++-....  ..+.+....+.+++ ||.
T Consensus       393 ~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~  438 (521)
T PRK03612        393 YSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLA  438 (521)
T ss_pred             chHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCE
Confidence            12357888889999999988744322  22334455566654 683

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=90.87  E-value=1.6  Score=31.83  Aligned_cols=89  Identities=19%  Similarity=0.229  Sum_probs=55.8

Q ss_pred             cCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            3 LLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         3 ~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      .-|| +||+-|. ...+..|++|++.=+...        ....+..-..+|-..   .....+||+|. .|-=|...+.+
T Consensus        63 SRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~--------~~~~~~~da~~~L~~---~~~~~~FDlVf-lDPPy~~~l~~  130 (187)
T COG0742          63 SRGAARVVFVEKDRKAVKILKENLKALGLEG--------EARVLRNDALRALKQ---LGTREPFDLVF-LDPPYAKGLLD  130 (187)
T ss_pred             hCCCceEEEEecCHHHHHHHHHHHHHhCCcc--------ceEEEeecHHHHHHh---cCCCCcccEEE-eCCCCccchhh
Confidence            3577 8999998 779999999988755321        011222223322111   11123599876 58888877776


Q ss_pred             HHHHHHH----HhcCCCeEEEEEEEec
Q 032462           81 PLLQTIF----ALSGPKTTILLGYEIR  103 (140)
Q Consensus        81 ~L~~tl~----~ll~~~~~~~~~~~~R  103 (140)
                      .....+.    .+++|++.+++=+...
T Consensus       131 ~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         131 KELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             HHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            6666555    3578888888876654

>PRK06202 hypothetical protein; Provisional

Probab=90.50  E-value=2.4  Score=31.27  Aligned_cols=78  Identities=18%  Similarity=0.138  Sum_probs=44.3

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc--chHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--LLEPL   82 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~--~~~~L   82 (140)
                      ++|+.+|. ++++...+.+...+..               .+...   .....+.....||+|+++.++..=.  ....+
T Consensus        89 ~~v~gvD~s~~~l~~a~~~~~~~~~---------------~~~~~---~~~~l~~~~~~fD~V~~~~~lhh~~d~~~~~~  150 (232)
T PRK06202         89 LEVTAIDPDPRAVAFARANPRRPGV---------------TFRQA---VSDELVAEGERFDVVTSNHFLHHLDDAEVVRL  150 (232)
T ss_pred             cEEEEEcCCHHHHHHHHhccccCCC---------------eEEEE---ecccccccCCCccEEEECCeeecCChHHHHHH
Confidence            59999998 8888888877643321               11111   1111111246899999999986532  23445


Q ss_pred             HHHHHHhcCCCeEEEEEEEec
Q 032462           83 LQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      ++-+.++++  +.+++..-.|
T Consensus       151 l~~~~r~~~--~~~~i~dl~~  169 (232)
T PRK06202        151 LADSAALAR--RLVLHNDLIR  169 (232)
T ss_pred             HHHHHHhcC--eeEEEecccc
Confidence            666655554  3444443333

>PLN02476 O-methyltransferase

Probab=90.29  E-value=2.7  Score=32.49  Aligned_cols=106  Identities=11%  Similarity=0.219  Sum_probs=67.8

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-cccc-----CCCccEEEEeecccCcc
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAV-----APPFDYIIGTDVVYAEH   77 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~-----~~~~D~IlasDviY~~~   77 (140)
                      +.+|+..|. ++.....++|++.++..           .+|++.   .|+..+ .+..     ..+||+|+- |.  ++.
T Consensus       143 ~G~V~TiE~d~e~~~~Ar~n~~~aGl~-----------~~I~li---~GdA~e~L~~l~~~~~~~~FD~VFI-Da--~K~  205 (278)
T PLN02476        143 SGCLVACERDSNSLEVAKRYYELAGVS-----------HKVNVK---HGLAAESLKSMIQNGEGSSYDFAFV-DA--DKR  205 (278)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCC-----------CcEEEE---EcCHHHHHHHHHhcccCCCCCEEEE-CC--CHH
Confidence            347999998 77899999999988652           344443   454322 1111     357997653 21  245


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHHH--hcCeEEeecCC
Q 032462           78 LLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWK--SNFNVKLVPKA  127 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~~~R~~------------~~~~~F~~~~~--~~f~v~~v~~~  127 (140)
                      .....+..+..+++|+|.+++=......            .....|.+.+.  ..|....+|..
T Consensus       206 ~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPig  269 (278)
T PLN02476        206 MYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPIG  269 (278)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEeC
Confidence            6777888888899999988764333221            12577888773  46777766653

>PLN02366 spermidine synthase

Probab=90.19  E-value=4.5  Score=31.72  Aligned_cols=100  Identities=12%  Similarity=0.108  Sum_probs=59.8

Q ss_pred             EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccc-ccc-CCCccEEEEeecccCcc------
Q 032462            7 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-KAV-APPFDYIIGTDVVYAEH------   77 (140)
Q Consensus         7 ~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~-~~~-~~~~D~IlasDviY~~~------   77 (140)
                      +|++-|. +++++..++.+..-....        ..+++++.   +++.-.. ... ..+||+||. |+ +++.      
T Consensus       117 ~V~~VEiD~~Vi~~ar~~f~~~~~~~--------~dpRv~vi---~~Da~~~l~~~~~~~yDvIi~-D~-~dp~~~~~~L  183 (308)
T PLN02366        117 QIDICEIDKMVIDVSKKFFPDLAVGF--------DDPRVNLH---IGDGVEFLKNAPEGTYDAIIV-DS-SDPVGPAQEL  183 (308)
T ss_pred             eEEEEECCHHHHHHHHHhhhhhcccc--------CCCceEEE---EChHHHHHhhccCCCCCEEEE-cC-CCCCCchhhh
Confidence            8999998 678999998875321111        23455544   3432111 111 457999985 64 3322      


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEE--EecChhHHHHHHHHHHhcC
Q 032462           78 LLEPLLQTIFALSGPKTTILLGY--EIRSTSVHEQMLQMWKSNF  119 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~--~~R~~~~~~~F~~~~~~~f  119 (140)
                      .-..+.+.++..|+|+|.+.+-.  .....+......+.+++.|
T Consensus       184 ~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F  227 (308)
T PLN02366        184 FEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETF  227 (308)
T ss_pred             hHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHC
Confidence            23457888888999999985421  1223344566677777777

>KOG3350 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.59  E-value=1.2  Score=32.54  Aligned_cols=88  Identities=16%  Similarity=0.161  Sum_probs=54.0

Q ss_pred             EEEeecCCCccccc-cCCCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEee
Q 032462           46 AVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLV  124 (140)
Q Consensus        46 ~~~LdWg~~~~~~~-~~~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~v  124 (140)
                      ..-+|.+.+...|. ....||+|||-=-.-..++...=..|++.|.+++.++++|..-+..+...+.+...+..|.-+. 
T Consensus       117 FvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCtGeimee~~s~~l~~~~~sF~PeH-  195 (217)
T KOG3350|consen  117 FVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCTGEIMEEWASALLPVLKCSFRPEH-  195 (217)
T ss_pred             eEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcCCceEEEechhHhHHHHHHHhhhhhccccchh-
Confidence            33445555544432 3567999987544445567888888999999998899999887765544444443334554332 


Q ss_pred             cCCCCCcccCC
Q 032462          125 PKAKESTMWGN  135 (140)
Q Consensus       125 ~~~~l~~~~~~  135 (140)
                       ..-|.-+|+|
T Consensus       196 -~~nLaNeF~c  205 (217)
T KOG3350|consen  196 -ERNLANEFRC  205 (217)
T ss_pred             -hcccccceeE
Confidence             3334444444

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=89.33  E-value=1  Score=35.48  Aligned_cols=61  Identities=18%  Similarity=0.061  Sum_probs=37.5

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHh-hcccccCCCCCCCCCceEEEEe-ecCCCc-cccccCCCccEEEEeecccCc
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVEL-DWGNED-HIKAVAPPFDYIIGTDVVYAE   76 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N-~~~~~~~~~~~~~~~~v~~~~L-dWg~~~-~~~~~~~~~D~IlasDviY~~   76 (140)
                      |+++++||. +..+...++|++.| ..           ...+.+..- +=++.. ........||+|++-=-.|..
T Consensus       138 ~~~~~atDId~~Al~~A~~Nv~~Np~l-----------~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s  202 (321)
T PRK11727        138 GWRFVGSDIDPQALASAQAIISANPGL-----------NGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHAS  202 (321)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhccCC-----------cCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcCc
Confidence            679999998 78999999999999 43           234444320 101000 000124579999876655543

>PRK06922 hypothetical protein; Provisional

Probab=89.10  E-value=2.9  Score=36.23  Aligned_cols=83  Identities=16%  Similarity=0.154  Sum_probs=51.0

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeeccc---------
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVY---------   74 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY---------   74 (140)
                      +++|+..|. +.++..++.|...+..             ++.+..-|=.+.+. ......||+|+.+-++-         
T Consensus       442 ~~kVtGIDIS~~MLe~Ararl~~~g~-------------~ie~I~gDa~dLp~-~fedeSFDvVVsn~vLH~L~syIp~~  507 (677)
T PRK06922        442 DKRIYGIDISENVIDTLKKKKQNEGR-------------SWNVIKGDAINLSS-SFEKESVDTIVYSSILHELFSYIEYE  507 (677)
T ss_pred             CCEEEEEECCHHHHHHHHHHhhhcCC-------------CeEEEEcchHhCcc-ccCCCCEEEEEEchHHHhhhhhcccc
Confidence            569999998 6789999888654321             22222212111110 01245799999875542         


Q ss_pred             ----CccchHHHHHHHHHhcCCCeEEEEEEE
Q 032462           75 ----AEHLLEPLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        75 ----~~~~~~~L~~tl~~ll~~~~~~~~~~~  101 (140)
                          .......+++.+...++|+|.+++...
T Consensus       508 g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        508 GKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             cccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence                123445667777778899999998753

>PRK04148 hypothetical protein; Provisional

Probab=88.58  E-value=0.64  Score=32.07  Aligned_cols=62  Identities=18%  Similarity=0.165  Sum_probs=38.9

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc---
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---   76 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~---   76 (140)
                      |+.+|.+|+++|. +..++.+++|.                   +.+..-|+.++        .+.+-=++|+||.-   
T Consensus        35 L~~~G~~ViaIDi~~~aV~~a~~~~-------------------~~~v~dDlf~p--------~~~~y~~a~liysirpp   87 (134)
T PRK04148         35 LKESGFDVIVIDINEKAVEKAKKLG-------------------LNAFVDDLFNP--------NLEIYKNAKLIYSIRPP   87 (134)
T ss_pred             HHHCCCEEEEEECCHHHHHHHHHhC-------------------CeEEECcCCCC--------CHHHHhcCCEEEEeCCC
Confidence            4678999999998 77666665441                   25556666654        33444467778873   


Q ss_pred             -cchHHHHHHHHHh
Q 032462           77 -HLLEPLLQTIFAL   89 (140)
Q Consensus        77 -~~~~~L~~tl~~l   89 (140)
                       ++++++++.-+..
T Consensus        88 ~el~~~~~~la~~~  101 (134)
T PRK04148         88 RDLQPFILELAKKI  101 (134)
T ss_pred             HHHHHHHHHHHHHc
Confidence             4555555544443

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=88.50  E-value=1.5  Score=34.13  Aligned_cols=88  Identities=22%  Similarity=0.255  Sum_probs=56.0

Q ss_pred             CC-CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEE----EeecCCCccccccCCCccEEEEee------
Q 032462            4 LG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV----ELDWGNEDHIKAVAPPFDYIIGTD------   71 (140)
Q Consensus         4 lG-a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~----~LdWg~~~~~~~~~~~~D~IlasD------   71 (140)
                      ++ ++|+++|. +..+.+..+|++++...           +.+.+.    +-+|.++..  ....++|+|++-=      
T Consensus       170 L~~~~v~AiD~S~~Ai~La~eN~qr~~l~-----------g~i~v~~~~me~d~~~~~~--l~~~~~dllvsNPPYI~~d  236 (328)
T KOG2904|consen  170 LPQCTVTAIDVSKAAIKLAKENAQRLKLS-----------GRIEVIHNIMESDASDEHP--LLEGKIDLLVSNPPYIRKD  236 (328)
T ss_pred             CCCceEEEEeccHHHHHHHHHHHHHHhhc-----------CceEEEecccccccccccc--cccCceeEEecCCCccccc
Confidence            44 48999998 77899999999999863           566666    456766543  2345666665421      


Q ss_pred             ---------cccCccc-----------hHHHHHHHHHhcCCCeEEEEEEEecC
Q 032462           72 ---------VVYAEHL-----------LEPLLQTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        72 ---------viY~~~~-----------~~~L~~tl~~ll~~~~~~~~~~~~R~  104 (140)
                               ..|++.+           .-.+..-..+++.|++.+++....|.
T Consensus       237 D~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~  289 (328)
T KOG2904|consen  237 DNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERK  289 (328)
T ss_pred             chhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccc
Confidence                     2333321           12233334456678999998888554

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=88.36  E-value=3  Score=30.51  Aligned_cols=65  Identities=11%  Similarity=0.053  Sum_probs=39.0

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEP   81 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~   81 (140)
                      |.+|+..|. ++.+..+++|+.                 .+.+..-+-.++    .....||+|++..+++.-  +....
T Consensus        67 ~~~v~giDiS~~~l~~A~~~~~-----------------~~~~~~~d~~~~----~~~~sfD~V~~~~vL~hl~p~~~~~  125 (204)
T TIGR03587        67 FKHIYGVEINEYAVEKAKAYLP-----------------NINIIQGSLFDP----FKDNFFDLVLTKGVLIHINPDNLPT  125 (204)
T ss_pred             CCeEEEEECCHHHHHHHHhhCC-----------------CCcEEEeeccCC----CCCCCEEEEEECChhhhCCHHHHHH
Confidence            569999998 789998887641                 112222222221    225689999999998743  33344


Q ss_pred             HHHHHHHhc
Q 032462           82 LLQTIFALS   90 (140)
Q Consensus        82 L~~tl~~ll   90 (140)
                      .++.+.+.+
T Consensus       126 ~l~el~r~~  134 (204)
T TIGR03587       126 AYRELYRCS  134 (204)
T ss_pred             HHHHHHhhc
Confidence            444444443

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR03438 probable methyltransferase

Probab=88.34  E-value=5.2  Score=30.97  Aligned_cols=90  Identities=12%  Similarity=0.104  Sum_probs=52.6

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-cCCCccEEEEee-cccC--ccch
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTD-VVYA--EHLL   79 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-~~~~~D~IlasD-viY~--~~~~   79 (140)
                      |.+|+.-|. +++|...++++....+.           -++....-|-.+....+. ......+++.++ .+++  ++-.
T Consensus        88 ~~~~~~iDiS~~mL~~a~~~l~~~~p~-----------~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~  156 (301)
T TIGR03438        88 PARYVPIDISADALKESAAALAADYPQ-----------LEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEA  156 (301)
T ss_pred             CCeEEEEECCHHHHHHHHHHHHhhCCC-----------ceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHH
Confidence            579999998 78999998888754321           122211111111111111 011234455444 4554  3456


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEecCh
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIRST  105 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R~~  105 (140)
                      ..+++-+.+.++|+|.++++...+..
T Consensus       157 ~~~L~~i~~~L~pgG~~lig~d~~~~  182 (301)
T TIGR03438       157 VAFLRRIRQLLGPGGGLLIGVDLVKD  182 (301)
T ss_pred             HHHHHHHHHhcCCCCEEEEeccCCCC
Confidence            67888888889999999987766543

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK01581 speE spermidine synthase; Validated

Probab=88.31  E-value=6.3  Score=31.86  Aligned_cols=105  Identities=14%  Similarity=0.084  Sum_probs=57.9

Q ss_pred             CEEEEecc-hhHHHHHHHHHH---HhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc----
Q 032462            6 CNVITTDQ-IEVLPLLKRNVE---WNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH----   77 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~---~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~----   77 (140)
                      .+|++-|. +++++..+..-.   .|+...        ..+++++..=|--+.  .+....+||+|+ +|+ .++.    
T Consensus       175 ~~It~VEIDpeVIelAr~~~~L~~~~~~~~--------~DpRV~vvi~Da~~f--L~~~~~~YDVII-vDl-~DP~~~~~  242 (374)
T PRK01581        175 LHVDLVDLDGSMINMARNVPELVSLNKSAF--------FDNRVNVHVCDAKEF--LSSPSSLYDVII-IDF-PDPATELL  242 (374)
T ss_pred             CeEEEEeCCHHHHHHHHhccccchhccccC--------CCCceEEEECcHHHH--HHhcCCCccEEE-EcC-CCccccch
Confidence            48999999 778888885311   232211        134555443222211  122356899999 464 3331    


Q ss_pred             ---chHHHHHHHHHhcCCCeEEEEEEEecC--hhHHHHHHHHHHh-cCeEE
Q 032462           78 ---LLEPLLQTIFALSGPKTTILLGYEIRS--TSVHEQMLQMWKS-NFNVK  122 (140)
Q Consensus        78 ---~~~~L~~tl~~ll~~~~~~~~~~~~R~--~~~~~~F~~~~~~-~f~v~  122 (140)
                         .-..+++.++..|+|+|.+.+-...-.  ...+..+.+.+++ +|.+.
T Consensus       243 ~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~  293 (374)
T PRK01581        243 STLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVK  293 (374)
T ss_pred             hhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceE
Confidence               125578888899999999765433111  1223445555644 55544

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=87.74  E-value=2.2  Score=31.70  Aligned_cols=78  Identities=23%  Similarity=0.271  Sum_probs=47.7

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      ||+++.+|+..+. +.+....++|++..+.            .+|.+   .+|+...--....+||.|+.+=.  -++..
T Consensus        90 la~l~~~V~siEr~~~L~~~A~~~L~~lg~------------~nV~v---~~gDG~~G~~~~aPyD~I~Vtaa--a~~vP  152 (209)
T COG2518          90 LARLVGRVVSIERIEELAEQARRNLETLGY------------ENVTV---RHGDGSKGWPEEAPYDRIIVTAA--APEVP  152 (209)
T ss_pred             HHHHhCeEEEEEEcHHHHHHHHHHHHHcCC------------CceEE---EECCcccCCCCCCCcCEEEEeec--cCCCC
Confidence            5677779999997 8889999999888764            23433   34544322123579998875422  12333


Q ss_pred             HHHHHHHHHhcCCCeEEEEE
Q 032462           80 EPLLQTIFALSGPKTTILLG   99 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~   99 (140)
                      ++|+    .-|+++|+.++-
T Consensus       153 ~~Ll----~QL~~gGrlv~P  168 (209)
T COG2518         153 EALL----DQLKPGGRLVIP  168 (209)
T ss_pred             HHHH----HhcccCCEEEEE
Confidence            4444    445566665543

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=87.67  E-value=5.6  Score=31.38  Aligned_cols=73  Identities=18%  Similarity=0.107  Sum_probs=44.7

Q ss_pred             EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHHH
Q 032462            7 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQT   85 (140)
Q Consensus         7 ~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~t   85 (140)
                      +|+..|. ++.+...++|++.++.            .++.+..-|..+..   ....+||+|+.+-      ..+.+...
T Consensus       107 ~VvgVDis~~~l~~Ar~~l~~~g~------------~nV~~i~gD~~~~~---~~~~~fD~Ii~~~------g~~~ip~~  165 (322)
T PRK13943        107 LVVSVEYSRKICEIAKRNVRRLGI------------ENVIFVCGDGYYGV---PEFAPYDVIFVTV------GVDEVPET  165 (322)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEeCChhhcc---cccCCccEEEECC------chHHhHHH
Confidence            6999997 8899999999988753            23444333322111   1124699998752      22233344


Q ss_pred             HHHhcCCCeEEEEEE
Q 032462           86 IFALSGPKTTILLGY  100 (140)
Q Consensus        86 l~~ll~~~~~~~~~~  100 (140)
                      +...++|+|.+++..
T Consensus       166 ~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        166 WFTQLKEGGRVIVPI  180 (322)
T ss_pred             HHHhcCCCCEEEEEe
Confidence            555677888877643

>PRK05785 hypothetical protein; Provisional

Probab=87.49  E-value=3.1  Score=30.89  Aligned_cols=66  Identities=12%  Similarity=0.103  Sum_probs=44.5

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      |.+|+..|. ++++...+...                 ..+   .-+   ....+.....||+|+++..+.+-...+..+
T Consensus        74 ~~~v~gvD~S~~Ml~~a~~~~-----------------~~~---~~d---~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l  130 (226)
T PRK05785         74 KYYVVALDYAENMLKMNLVAD-----------------DKV---VGS---FEALPFRDKSFDVVMSSFALHASDNIEKVI  130 (226)
T ss_pred             CCEEEEECCCHHHHHHHHhcc-----------------ceE---Eec---hhhCCCCCCCEEEEEecChhhccCCHHHHH
Confidence            579999998 77887665321                 001   111   112233357899999999997666677888


Q ss_pred             HHHHHhcCCC
Q 032462           84 QTIFALSGPK   93 (140)
Q Consensus        84 ~tl~~ll~~~   93 (140)
                      +-+.+.++|.
T Consensus       131 ~e~~RvLkp~  140 (226)
T PRK05785        131 AEFTRVSRKQ  140 (226)
T ss_pred             HHHHHHhcCc
Confidence            8888888884

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=87.19  E-value=5.2  Score=31.83  Aligned_cols=101  Identities=17%  Similarity=0.197  Sum_probs=58.1

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEee-------cCCCcccc------ccCCCccE
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD-------WGNEDHIK------AVAPPFDY   66 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~Ld-------Wg~~~~~~------~~~~~~D~   66 (140)
                      ||..+.+|+..+. ++.+...++|++.|+.            .++++...+       |.....+.      .....+|.
T Consensus       214 la~~~~~V~gvE~~~~av~~A~~Na~~N~i------------~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~  281 (352)
T PF05958_consen  214 LAKKAKKVIGVEIVEEAVEDARENAKLNGI------------DNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDA  281 (352)
T ss_dssp             HHCCSSEEEEEES-HHHHHHHHHHHHHTT--------------SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESE
T ss_pred             HHhhCCeEEEeeCCHHHHHHHHHHHHHcCC------------CcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCE
Confidence            4566779999998 8899999999999986            344444322       22111111      11235777


Q ss_pred             EEEeecccCcc---chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEee
Q 032462           67 IIGTDVVYAEH---LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLV  124 (140)
Q Consensus        67 IlasDviY~~~---~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~v  124 (140)
                      ||     -+|.   +-+.+++.+..   .+..+||++-..   +..+=+..+.+|+.++.|
T Consensus       282 vi-----lDPPR~G~~~~~~~~~~~---~~~ivYvSCnP~---tlaRDl~~L~~~y~~~~v  331 (352)
T PF05958_consen  282 VI-----LDPPRAGLDEKVIELIKK---LKRIVYVSCNPA---TLARDLKILKEGYKLEKV  331 (352)
T ss_dssp             EE-----E---TT-SCHHHHHHHHH---SSEEEEEES-HH---HHHHHHHHHHCCEEEEEE
T ss_pred             EE-----EcCCCCCchHHHHHHHhc---CCeEEEEECCHH---HHHHHHHHHhhcCEEEEE
Confidence            63     4542   44556666654   467888887643   333323445568888876

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=86.54  E-value=1.6  Score=32.47  Aligned_cols=125  Identities=17%  Similarity=0.182  Sum_probs=64.5

Q ss_pred             CccCCCEEEEecc-hhHHHHH-HHHHH-HhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecc--cC
Q 032462            1 MALLGCNVITTDQ-IEVLPLL-KRNVE-WNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV--YA   75 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l-~~Ni~-~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDvi--Y~   75 (140)
                      ||..|.+||.-|. +..+... ++|-. -+.......  .....++|++..=|--+...  ....+||+|.=.-++  -.
T Consensus        55 La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~--~~~~~~~i~~~~gDfF~l~~--~~~g~fD~iyDr~~l~Alp  130 (218)
T PF05724_consen   55 LAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGF--KRYQAGRITIYCGDFFELPP--EDVGKFDLIYDRTFLCALP  130 (218)
T ss_dssp             HHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTE--EEETTSSEEEEES-TTTGGG--SCHHSEEEEEECSSTTTS-
T ss_pred             HHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccce--eeecCCceEEEEcccccCCh--hhcCCceEEEEecccccCC
Confidence            5778999999998 6666655 32222 111100000  00012233333333332211  112467776533222  23


Q ss_pred             ccchHHHHHHHHHhcCCCeEE-EEEEEecC-----h--hH-HHHHHHHHHhcCeEEeecCCCC
Q 032462           76 EHLLEPLLQTIFALSGPKTTI-LLGYEIRS-----T--SV-HEQMLQMWKSNFNVKLVPKAKE  129 (140)
Q Consensus        76 ~~~~~~L~~tl~~ll~~~~~~-~~~~~~R~-----~--~~-~~~F~~~~~~~f~v~~v~~~~l  129 (140)
                      ++..+.-++.+.++++|+|.+ +++.....     +  .+ .+...+.+..+|+++.+...+.
T Consensus       131 p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~~~f~i~~l~~~~~  193 (218)
T PF05724_consen  131 PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFGPGFEIEELEEEDS  193 (218)
T ss_dssp             GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHTTTEEEEEEEEEE-
T ss_pred             HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhcCCcEEEEEecccc
Confidence            578889999999999999984 44443221     1  12 3344455588999887765433

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=85.96  E-value=0.86  Score=32.48  Aligned_cols=59  Identities=22%  Similarity=0.036  Sum_probs=36.0

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT   70 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas   70 (140)
                      +|+.+.+|++-|. +.-+..+++|++.=+.           ..+|.+..=||.+....-.....+|+|.+|
T Consensus        17 FA~~~~~Viaidid~~~~~~a~hNa~vYGv-----------~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen   17 FARTFDRVIAIDIDPERLECAKHNAEVYGV-----------ADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             HHHTT-EEEEEES-HHHHHHHHHHHHHTT------------GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             HHHhCCeEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            3566779999998 7789999999988764           256777777776542211111126777765

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=85.58  E-value=4.3  Score=31.18  Aligned_cols=75  Identities=17%  Similarity=0.224  Sum_probs=54.5

Q ss_pred             EEEeecCCCccccccCCCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEEEEe-------------cCh-------
Q 032462           46 AVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI-------------RST-------  105 (140)
Q Consensus        46 ~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~-------------R~~-------  105 (140)
                      .-..+|.+.      ..+||+|.+--++=.-+..-.|++.|+..++|+|.+++|-..             +.+       
T Consensus       140 l~~~~w~~~------~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~  213 (265)
T PF05219_consen  140 LDIDDWQQT------DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVK  213 (265)
T ss_pred             Eehhhhhcc------CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCC
Confidence            345568753      358999999999988888899999999999999999886431             111       


Q ss_pred             -----hHHHHHHHHHH-hcCeEEeecC
Q 032462          106 -----SVHEQMLQMWK-SNFNVKLVPK  126 (140)
Q Consensus       106 -----~~~~~F~~~~~-~~f~v~~v~~  126 (140)
                           +-...|++-++ .||+++....
T Consensus       214 g~~~E~~v~~l~~v~~p~GF~v~~~tr  240 (265)
T PF05219_consen  214 GATFEEQVSSLVNVFEPAGFEVERWTR  240 (265)
T ss_pred             CCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence                 12356775554 6999887543

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=85.23  E-value=6.4  Score=29.40  Aligned_cols=106  Identities=14%  Similarity=0.105  Sum_probs=71.7

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEE-eecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE-LDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~-LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      +++|..|. ++-....++|++.-+..           .+|.... +||-+.-.. ....+||+|.. |  -++...+..+
T Consensus        85 g~l~tiE~~~e~~~~A~~n~~~ag~~-----------~~i~~~~~gdal~~l~~-~~~~~fDliFI-D--adK~~yp~~l  149 (219)
T COG4122          85 GRLTTIERDEERAEIARENLAEAGVD-----------DRIELLLGGDALDVLSR-LLDGSFDLVFI-D--ADKADYPEYL  149 (219)
T ss_pred             CeEEEEeCCHHHHHHHHHHHHHcCCc-----------ceEEEEecCcHHHHHHh-ccCCCccEEEE-e--CChhhCHHHH
Confidence            38999998 88999999999987752           3466555 677654321 24689998864 1  1345667777


Q ss_pred             HHHHHhcCCCeEEEEEEEecCh------------hH--HHHHHHHHH--hcCeEEeecC
Q 032462           84 QTIFALSGPKTTILLGYEIRST------------SV--HEQMLQMWK--SNFNVKLVPK  126 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~~R~~------------~~--~~~F~~~~~--~~f~v~~v~~  126 (140)
                      .-+..+++|+|.+++-.-.+..            .+  .+.|.+...  .+++...+|.
T Consensus       150 e~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~  208 (219)
T COG4122         150 ERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPL  208 (219)
T ss_pred             HHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEec
Confidence            7777889999988774443331            11  466777773  3677777773

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=84.35  E-value=11  Score=30.22  Aligned_cols=103  Identities=20%  Similarity=0.189  Sum_probs=61.3

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc---
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---   77 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~---   77 (140)
                      +.+|++|+-+|. ..++.-.+.|++.-+..           .-....  -| +....+.....+|-| ++|-=|..+   
T Consensus       216 gl~G~~viG~Did~~mv~gak~Nl~~y~i~-----------~~~~~~--~~-Da~~lpl~~~~vdaI-atDPPYGrst~~  280 (347)
T COG1041         216 GLMGARVIGSDIDERMVRGAKINLEYYGIE-----------DYPVLK--VL-DATNLPLRDNSVDAI-ATDPPYGRSTKI  280 (347)
T ss_pred             hhcCceEeecchHHHHHhhhhhhhhhhCcC-----------ceeEEE--ec-ccccCCCCCCccceE-EecCCCCccccc
Confidence            468999999998 56888899999876521           000111  11 111112112246654 567777643   


Q ss_pred             -------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEeec
Q 032462           78 -------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVP  125 (140)
Q Consensus        78 -------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~v~  125 (140)
                             +....+.++...+.++|.+.++.. +..     .....+.+|.+...-
T Consensus       281 ~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p-~~~-----~~~~~~~~f~v~~~~  329 (347)
T COG1041         281 KGEGLDELYEEALESASEVLKPGGRIVFAAP-RDP-----RHELEELGFKVLGRF  329 (347)
T ss_pred             ccccHHHHHHHHHHHHHHHhhcCcEEEEecC-Ccc-----hhhHhhcCceEEEEE
Confidence                   356677777778889998888877 222     112235688876543

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=84.17  E-value=8.2  Score=28.26  Aligned_cols=80  Identities=13%  Similarity=0.166  Sum_probs=50.5

Q ss_pred             ceEEEEeecCCCccc-----cccCCCccEEEEeecccCcc-----------chHHHHHHHHHhcCCCeEEEEEEEecChh
Q 032462           43 SIQAVELDWGNEDHI-----KAVAPPFDYIIGTDVVYAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRSTS  106 (140)
Q Consensus        43 ~v~~~~LdWg~~~~~-----~~~~~~~D~IlasDviY~~~-----------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~  106 (140)
                      .+.+...|..+.+..     +.....||+|+..=+.+...           .+...++.+.++++|+|.+++.. .+...
T Consensus        92 ~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~-~~~~~  170 (209)
T PRK11188         92 GVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV-FQGEG  170 (209)
T ss_pred             CcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE-ecCcC
Confidence            467777777765311     11246899999743232211           12456777778899999998864 34433


Q ss_pred             HHHHHHHHHHhcCeEEee
Q 032462          107 VHEQMLQMWKSNFNVKLV  124 (140)
Q Consensus       107 ~~~~F~~~~~~~f~v~~v  124 (140)
                       +..|+..+++.|.-.++
T Consensus       171 -~~~~l~~l~~~f~~v~~  187 (209)
T PRK11188        171 -FDEYLREIRSLFTKVKV  187 (209)
T ss_pred             -HHHHHHHHHhCceEEEE
Confidence             67788888888875544

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=83.73  E-value=16  Score=29.17  Aligned_cols=25  Identities=24%  Similarity=0.263  Sum_probs=20.9

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhc
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTS   29 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~   29 (140)
                      |..|++-|. +.=+..|++|+++=+.
T Consensus       182 ~~iV~A~D~~~~Rl~~l~~nl~RlG~  207 (355)
T COG0144         182 GAIVVAVDVSPKRLKRLRENLKRLGV  207 (355)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHHcCC
Confidence            457899998 7789999999998654

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=82.69  E-value=5.8  Score=29.14  Aligned_cols=112  Identities=14%  Similarity=0.173  Sum_probs=60.5

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCC---CCCCCCceEEEEeecCCCccccccCCCccEEEEe--ecccC----
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP---GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT--DVVYA----   75 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~---~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas--DviY~----   75 (140)
                      +.+++||. |..+.--++-+..|+.....-..   .+.....|.+..  .+-+- .+   ..++=|-..  +.-|-    
T Consensus        69 ~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLv--fNPPY-Vp---t~~~~i~~~~i~~a~aGG~~  142 (209)
T KOG3191|consen   69 ALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLV--FNPPY-VP---TSDEEIGDEGIASAWAGGKD  142 (209)
T ss_pred             ceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEE--ECCCc-Cc---CCcccchhHHHHHHHhcCcc
Confidence            47899998 88998888889999865321000   000011121111  11110 00   011101000  00022    


Q ss_pred             -ccchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeec
Q 032462           76 -EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVP  125 (140)
Q Consensus        76 -~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~  125 (140)
                       .+..+-|+..+..+++|.|.+|+..-.|+..  ++.++.+ ++||.+..+-
T Consensus       143 Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p--~ei~k~l~~~g~~~~~~~  192 (209)
T KOG3191|consen  143 GREVTDRLLPQVPDILSPRGVFYLVALRANKP--KEILKILEKKGYGVRIAM  192 (209)
T ss_pred             hHHHHHHHHhhhhhhcCcCceEEeeehhhcCH--HHHHHHHhhcccceeEEE
Confidence             2356788888899999999999988877753  4556656 4577655443

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=82.01  E-value=8.5  Score=28.75  Aligned_cols=63  Identities=17%  Similarity=0.251  Sum_probs=43.3

Q ss_pred             EEEEeecccCc----cchHHHHHHHHHhcCCCeEEEEEEEecChhH----HHHHH---HHHH-hcCeE-EeecCCC
Q 032462           66 YIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILLGYEIRSTSV----HEQML---QMWK-SNFNV-KLVPKAK  128 (140)
Q Consensus        66 ~IlasDviY~~----~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~----~~~F~---~~~~-~~f~v-~~v~~~~  128 (140)
                      +|=..||||.+    .+.+-+..-.+.+++++|-++++-+-|+-++    .+-|-   ++++ .+|++ +.+..+-
T Consensus       142 ~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LeP  217 (231)
T COG1889         142 LVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEP  217 (231)
T ss_pred             hcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCC
Confidence            55567899974    5777788888899999999999999997421    22343   4443 47874 4444443

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=81.96  E-value=4.4  Score=32.32  Aligned_cols=80  Identities=15%  Similarity=0.089  Sum_probs=49.3

Q ss_pred             ccCCC-EEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceE-EEEeecCCCccccccCCCccEEEEe---ecccCc
Q 032462            2 ALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQ-AVELDWGNEDHIKAVAPPFDYIIGT---DVVYAE   76 (140)
Q Consensus         2 A~lGa-~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~-~~~LdWg~~~~~~~~~~~~D~Ilas---DviY~~   76 (140)
                      |+.|| +|++-|..++.+..++.+..|+..           ..|+ ++..-|+-  ..|  ..+.|+||.-   =+++.+
T Consensus        79 akAGA~~V~aVe~S~ia~~a~~iv~~N~~~-----------~ii~vi~gkvEdi--~LP--~eKVDiIvSEWMGy~Ll~E  143 (346)
T KOG1499|consen   79 AKAGARKVYAVEASSIADFARKIVKDNGLE-----------DVITVIKGKVEDI--ELP--VEKVDIIVSEWMGYFLLYE  143 (346)
T ss_pred             HHhCcceEEEEechHHHHHHHHHHHhcCcc-----------ceEEEeecceEEE--ecC--ccceeEEeehhhhHHHHHh
Confidence            67898 899999999999999999999863           2233 22233332  122  4789988742   233334


Q ss_pred             cchHHHHHHHHHhcCCCeEE
Q 032462           77 HLLEPLLQTIFALSGPKTTI   96 (140)
Q Consensus        77 ~~~~~L~~tl~~ll~~~~~~   96 (140)
                      +.++..+-+=.+.|+|+|.+
T Consensus       144 sMldsVl~ARdkwL~~~G~i  163 (346)
T KOG1499|consen  144 SMLDSVLYARDKWLKEGGLI  163 (346)
T ss_pred             hhhhhhhhhhhhccCCCceE
Confidence            44444444444556655543

>TIGR00438 rrmJ cell division protein FtsJ

Probab=81.74  E-value=7.7  Score=27.60  Aligned_cols=75  Identities=13%  Similarity=0.201  Sum_probs=41.5

Q ss_pred             eEEEEeecCCCcccc-----ccCCCccEEEEeecc-----cCcc------chHHHHHHHHHhcCCCeEEEEEEEecChhH
Q 032462           44 IQAVELDWGNEDHIK-----AVAPPFDYIIGTDVV-----YAEH------LLEPLLQTIFALSGPKTTILLGYEIRSTSV  107 (140)
Q Consensus        44 v~~~~LdWg~~~~~~-----~~~~~~D~IlasDvi-----Y~~~------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~  107 (140)
                      +.....+..+.....     ....+||+|+..=..     +...      ..+.++..+.++++|+|.+++..... .. 
T Consensus        74 i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~-~~-  151 (188)
T TIGR00438        74 VDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG-EE-  151 (188)
T ss_pred             ceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC-cc-
Confidence            455555665432110     124579999962111     1111      12567777778889999998854222 22 


Q ss_pred             HHHHHHHHHhcCe
Q 032462          108 HEQMLQMWKSNFN  120 (140)
Q Consensus       108 ~~~F~~~~~~~f~  120 (140)
                      ...++..+++.|.
T Consensus       152 ~~~~l~~l~~~~~  164 (188)
T TIGR00438       152 IDEYLNELRKLFE  164 (188)
T ss_pred             HHHHHHHHHhhhc
Confidence            4567777766664

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=81.35  E-value=16  Score=27.63  Aligned_cols=83  Identities=13%  Similarity=0.153  Sum_probs=60.3

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      ++|++.|. +.+|...++=...-..            ..   ..+-=++.+..|.....||+|..|=-+=+=...+..++
T Consensus        76 g~v~~~D~s~~ML~~a~~k~~~~~~------------~~---i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~  140 (238)
T COG2226          76 GEVVGLDISESMLEVAREKLKKKGV------------QN---VEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALK  140 (238)
T ss_pred             ceEEEEECCHHHHHHHHHHhhccCc------------cc---eEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHH
Confidence            58999998 7788877654432111            11   23333455555666789999999999888889999999


Q ss_pred             HHHHhcCCCeEEEEEEEec
Q 032462           85 TIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R  103 (140)
                      -+.+.++|+|++++.--.+
T Consensus       141 E~~RVlKpgG~~~vle~~~  159 (238)
T COG2226         141 EMYRVLKPGGRLLVLEFSK  159 (238)
T ss_pred             HHHHhhcCCeEEEEEEcCC
Confidence            9999999999887655544

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=80.83  E-value=4.5  Score=29.76  Aligned_cols=109  Identities=13%  Similarity=0.121  Sum_probs=70.4

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccc--cCCCccEEEEeecccCccchH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA--VAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~--~~~~~D~IlasDviY~~~~~~   80 (140)
                      +++|+..|. ++.....++|++..+.           ..+|++..=+..+.-. ...  ...+||+|.-= .  ++....
T Consensus        70 ~g~i~tiE~~~~~~~~A~~~~~~ag~-----------~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiD-a--~K~~y~  135 (205)
T PF01596_consen   70 DGKITTIEIDPERAEIARENFRKAGL-----------DDRIEVIEGDALEVLPELANDGEEGQFDFVFID-A--DKRNYL  135 (205)
T ss_dssp             TSEEEEEESSHHHHHHHHHHHHHTTG-----------GGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEE-S--TGGGHH
T ss_pred             cceEEEecCcHHHHHHHHHHHHhcCC-----------CCcEEEEEeccHhhHHHHHhccCCCceeEEEEc-c--cccchh
Confidence            579999998 7889999999998765           2466666544332110 001  13589988652 2  456666


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEecCh----------h--HHHHHHHHHH--hcCeEEeecCC
Q 032462           81 PLLQTIFALSGPKTTILLGYEIRST----------S--VHEQMLQMWK--SNFNVKLVPKA  127 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~R~~----------~--~~~~F~~~~~--~~f~v~~v~~~  127 (140)
                      ..+..+..+++++|.+++=......          .  ....|.+.+.  ..|+...+|..
T Consensus       136 ~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpig  196 (205)
T PF01596_consen  136 EYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPIG  196 (205)
T ss_dssp             HHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECST
T ss_pred             hHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEeC
Confidence            7777777899999988775544321          1  2457888874  36776666653

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=80.60  E-value=20  Score=26.21  Aligned_cols=100  Identities=19%  Similarity=0.231  Sum_probs=64.2

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeecccCccchHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      .+|++-|. ++.+.++++|.+..+.            .++++..   |+.++ .+. .+.||.|.-.    ....++.++
T Consensus        59 ~~v~AIe~~~~a~~~~~~N~~~fg~------------~n~~vv~---g~Ap~~L~~-~~~~daiFIG----Gg~~i~~il  118 (187)
T COG2242          59 GRVIAIERDEEALELIERNAARFGV------------DNLEVVE---GDAPEALPD-LPSPDAIFIG----GGGNIEEIL  118 (187)
T ss_pred             ceEEEEecCHHHHHHHHHHHHHhCC------------CcEEEEe---ccchHhhcC-CCCCCEEEEC----CCCCHHHHH
Confidence            58999998 8899999999999873            3444443   32222 111 2257755322    235778899


Q ss_pred             HHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcC-eEEeecCC
Q 032462           84 QTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNF-NVKLVPKA  127 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f-~v~~v~~~  127 (140)
                      .+....++|++++++-. .+-. +...-++.+ +.|+ ++.++--+
T Consensus       119 e~~~~~l~~ggrlV~na-itlE-~~~~a~~~~~~~g~~ei~~v~is  162 (187)
T COG2242         119 EAAWERLKPGGRLVANA-ITLE-TLAKALEALEQLGGREIVQVQIS  162 (187)
T ss_pred             HHHHHHcCcCCeEEEEe-ecHH-HHHHHHHHHHHcCCceEEEEEee
Confidence            99999999999886543 3433 345556666 4577 66665443

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=80.27  E-value=3.8  Score=32.07  Aligned_cols=63  Identities=19%  Similarity=0.259  Sum_probs=33.4

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccc---ccCCCccEEEEeecccCcc
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK---AVAPPFDYIIGTDVVYAEH   77 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~---~~~~~~D~IlasDviY~~~   77 (140)
                      .|++++.||. +..+...++||+.|...          ...|++..-.=. ..-+.   .....||+.++---.|...
T Consensus       125 ~~W~fvaTdID~~sl~~A~~nv~~N~~L----------~~~I~l~~~~~~-~~i~~~i~~~~e~~dftmCNPPFy~s~  191 (299)
T PF05971_consen  125 YGWSFVATDIDPKSLESARENVERNPNL----------ESRIELRKQKNP-DNIFDGIIQPNERFDFTMCNPPFYSSQ  191 (299)
T ss_dssp             H--EEEEEES-HHHHHHHHHHHHHT-T-----------TTTEEEEE--ST--SSTTTSTT--S-EEEEEE-----SS-
T ss_pred             cCCeEEEecCCHHHHHHHHHHHHhcccc----------ccceEEEEcCCc-cccchhhhcccceeeEEecCCccccCh
Confidence            3789999999 77999999999999321          356666543211 11111   1235799999877777754

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	140
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	8e-14

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281

 Score = 65.3 bits (158), Expect = 8e-14
 Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 13/124 (10%)

Query: 1   MALLGCN-VITTD--QIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN---E 54
             L G + V+ TD    E+L  L+ N+  +T+  +  +  +    S + V   WG+    
Sbjct: 97  AFLAGADQVVATDYPDPEILNSLESNIREHTA--NSCSSETVKRASPKVVPYRWGDSPDS 154

Query: 55  DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFAL-----SGPKTTILLGYEIRSTSVHE 109
                    F  ++  D++      + LL+++  L     + P    L+ +      + E
Sbjct: 155 LQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAE 214

Query: 110 QMLQ 113
           + L 
Sbjct: 215 RDLA 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	140
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.43
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.46
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.37
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.26
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.24
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.24
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.23
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.2
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.19
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.18
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.18
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.17
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.17
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.16
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.16
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.16
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.14
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.11
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.11
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.11
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.11
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.1
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.07
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.07
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.07
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.07
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.07
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.05
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.05
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.04
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.03
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.03
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	97.99
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.98
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	97.98
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	97.97
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.96
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	97.96
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.96
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	97.92
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	97.92
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.92
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	97.9
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.89
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	97.89
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.89
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	97.88
3i9f_A	170	Putative type 11 methyltransferase; structural gen	97.87
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	97.86
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	97.85
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	97.83
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	97.82
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	97.82
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	97.79
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	97.78
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	97.77
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	97.76
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	97.76
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	97.75
2p7i_A	250	Hypothetical protein; putative methyltransferase,	97.74
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	97.74
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	97.73
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	97.72
2esr_A	177	Methyltransferase; structural genomics, hypothetic	97.72
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	97.7
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	97.7
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	97.67
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	97.66
3ocj_A	305	Putative exported protein; structural genomics, PS	97.66
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	97.65
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	97.64
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.62
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	97.62
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	97.62
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	97.61
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	97.59
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	97.59
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	97.57
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	97.56
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	97.55
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.55
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	97.54
3k6r_A	278	Putative transferase PH0793; structural genomics,	97.53
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	97.53
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	97.5
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.49
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	97.49
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	97.49
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	97.49
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	97.48
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	97.47
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.47
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	97.47
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.47
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.45
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	97.44
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	97.43
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	97.43
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.42
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	97.41
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.4
2qm3_A	373	Predicted methyltransferase; putative methyltransf	97.39
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	97.36
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	97.36
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	97.36
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	97.35
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	97.35
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	97.34
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.33
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	97.33
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	97.32
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	97.31
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	97.3
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.3
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	97.29
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	97.29
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.28
3cc8_A	230	Putative methyltransferase; structural genomics, j	97.27
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.27
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	97.27
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	97.26
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	97.24
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	97.23
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	97.22
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	97.21
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	97.19
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.18
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	97.16
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	97.16
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	97.13
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	97.11
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	97.1
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.09
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	97.09
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	97.08
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	97.08
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.05
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	97.03
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	96.99
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	96.98
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.98
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	96.98
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	96.96
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	96.95
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	96.93
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	96.92
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	96.82
2pt6_A	321	Spermidine synthase; transferase, structural genom	96.81
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	96.81
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	96.8
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	96.8
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	96.78
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	96.75
2i7c_A	283	Spermidine synthase; transferase, structural genom	96.74
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	96.72
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	96.7
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	96.69
3ege_A	261	Putative methyltransferase from antibiotic biosyn	96.68
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	96.66
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	96.66
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	96.65
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	96.63
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	96.63
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	96.62
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	96.62
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	96.58
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	96.57
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	96.57
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	96.54
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	96.51
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	96.5
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	96.48
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	96.48
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	96.43
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	96.43
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	96.4
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	96.39
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	96.38
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	96.37
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	96.35
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	96.35
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	96.34
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	96.34
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	96.31
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	96.3
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	96.22
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	96.21
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	96.2
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	96.17
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	96.14
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	96.09
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	96.08
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	96.07
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	96.06
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	96.05
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	96.02
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	96.01
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	96.0
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	95.97
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	95.95
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	95.92
2o07_A	304	Spermidine synthase; structural genomics, structur	95.89
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	95.86
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	95.86
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	95.85
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	95.84
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	95.78
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	95.7
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	95.69
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	95.68
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	95.65
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	95.6
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	95.58
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	95.54
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	95.21
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	95.14
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	95.08
2b25_A	336	Hypothetical protein; structural genomics, methyl	94.99
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	94.9
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	94.72
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	94.62
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	94.48
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	94.35
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	94.29
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	94.19
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	94.12
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	93.94
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	93.9
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	93.82
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	93.64
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	93.34
2h00_A	254	Methyltransferase 10 domain containing protein; st	92.98
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	92.74
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	92.32
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	92.19
3ll7_A	410	Putative methyltransferase; methytransferase, stru	92.13
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	92.1
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	91.54
2oo3_A	283	Protein involved in catabolism of external DNA; st	91.47
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	91.09
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	90.9
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	90.87
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	90.29
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	89.81
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	89.79
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	89.62
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	89.46
3cvo_A	202	Methyltransferase-like protein of unknown functio;	88.82
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	88.26
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	87.41
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	86.88
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	85.32
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	81.13

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.43  E-value=7.2e-13  Score=100.14  Aligned_cols=123  Identities=16%  Similarity=0.237  Sum_probs=89.1

Q ss_pred             ccCCC-EEEEecc--hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccc--cCCCccEEEEeecccC
Q 032462            2 ALLGC-NVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA--VAPPFDYIIGTDVVYA   75 (140)
Q Consensus         2 A~lGa-~Vv~TD~--~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~--~~~~~D~IlasDviY~   75 (140)
                      |+.|+ +|+.+|.  ++++..+++|++.|........  .....++.+..++|++... ...  ...+||+|+++|++|.
T Consensus        98 a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~  175 (281)
T 3bzb_A           98 FLAGADQVVATDYPDPEILNSLESNIREHTANSCSSE--TVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSF  175 (281)
T ss_dssp             HHTTCSEEEEEECSCHHHHHHHHHHHHTTCC------------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSC
T ss_pred             HHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccc--cCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccC
Confidence            56787 9999998  5799999999987743211000  0012478999999998532 111  2468999999999999


Q ss_pred             ccchHHHHHHHHHhcC---C--CeEEEEEEEecCh---hHHHHHHHHHH-hc-CeEEeecC
Q 032462           76 EHLLEPLLQTIFALSG---P--KTTILLGYEIRST---SVHEQMLQMWK-SN-FNVKLVPK  126 (140)
Q Consensus        76 ~~~~~~L~~tl~~ll~---~--~~~~~~~~~~R~~---~~~~~F~~~~~-~~-f~v~~v~~  126 (140)
                      ....+.+++++.++++   |  +|.+++.+..++.   .....|++.++ .| |.++.+..
T Consensus       176 ~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~~  236 (281)
T 3bzb_A          176 HQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWLS  236 (281)
T ss_dssp             GGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEEEEC
T ss_pred             hHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEecc
Confidence            9999999999999999   9  9998888776653   22467888884 58 99998843

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.46  E-value=1.1e-06  Score=63.49  Aligned_cols=105  Identities=22%  Similarity=0.292  Sum_probs=75.9

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc------
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH------   77 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~------   77 (140)
                      |++|+.+|. +..+..+++|++.|+.             ++++..-|+......+  ..+||+|+ ++.-|...      
T Consensus        79 ~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~v~~~~~d~~~~~~~~--~~~fD~I~-~npp~~~~~~~~~~  142 (230)
T 3evz_A           79 NCKVTATEVDEEFFEYARRNIERNNS-------------NVRLVKSNGGIIKGVV--EGTFDVIF-SAPPYYDKPLGRVL  142 (230)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHTTC-------------CCEEEECSSCSSTTTC--CSCEEEEE-ECCCCC--------
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHhCC-------------CcEEEeCCchhhhhcc--cCceeEEE-ECCCCcCCcccccc
Confidence            679999998 8899999999998862             5577777765433222  47899999 45555332      


Q ss_pred             --------------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecC
Q 032462           78 --------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK  126 (140)
Q Consensus        78 --------------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~  126 (140)
                                    ....+++.+.++++|+|.+++....+.. ....+.+.+ +.||.++.+..
T Consensus       143 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~l~~~g~~~~~~~~  205 (230)
T 3evz_A          143 TEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEK-LLNVIKERGIKLGYSVKDIKF  205 (230)
T ss_dssp             -------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHH-HHHHHHHHHHHTTCEEEEEEE
T ss_pred             ChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHh-HHHHHHHHHHHcCCceEEEEe
Confidence                          2367888888889999999987765543 356777777 46998887643

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.37  E-value=2.1e-06  Score=64.00  Aligned_cols=89  Identities=19%  Similarity=0.164  Sum_probs=71.2

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      +..|++|+.+|. +..+...++++..++.           ..++.+...++.+...  ....+||+|++..+++.-....
T Consensus        87 ~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~--~~~~~fD~v~~~~~l~~~~~~~  153 (285)
T 4htf_A           87 AERGHQVILCDLSAQMIDRAKQAAEAKGV-----------SDNMQFIHCAAQDVAS--HLETPVDLILFHAVLEWVADPR  153 (285)
T ss_dssp             HHTTCEEEEEESCHHHHHHHHHHHHC-CC-----------GGGEEEEESCGGGTGG--GCSSCEEEEEEESCGGGCSCHH
T ss_pred             HHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CcceEEEEcCHHHhhh--hcCCCceEEEECchhhcccCHH
Confidence            456889999998 8899999999887653           2567888877765542  2357899999999998877778


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEec
Q 032462           81 PLLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      .+++.+.++++|+|.+++....+
T Consensus       154 ~~l~~~~~~LkpgG~l~~~~~~~  176 (285)
T 4htf_A          154 SVLQTLWSVLRPGGVLSLMFYNA  176 (285)
T ss_dssp             HHHHHHHHTEEEEEEEEEEEEBH
T ss_pred             HHHHHHHHHcCCCeEEEEEEeCC
Confidence            89999999999999999887543

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.26  E-value=4e-06  Score=60.12  Aligned_cols=90  Identities=13%  Similarity=0.075  Sum_probs=66.1

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      |..|++|+..|. +..+..+++|+..+....       ....++.+...+..+.   +.....||+|+++.+++.-....
T Consensus        49 ~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~d~~~~---~~~~~~~D~v~~~~~l~~~~~~~  118 (235)
T 3sm3_A           49 ASKGYSVTGIDINSEAIRLAETAARSPGLNQ-------KTGGKAEFKVENASSL---SFHDSSFDFAVMQAFLTSVPDPK  118 (235)
T ss_dssp             HHTTCEEEEEESCHHHHHHHHHHTTCCSCCS-------SSSCEEEEEECCTTSC---CSCTTCEEEEEEESCGGGCCCHH
T ss_pred             HhCCCeEEEEECCHHHHHHHHHHHHhcCCcc-------ccCcceEEEEeccccc---CCCCCceeEEEEcchhhcCCCHH
Confidence            456889999998 889999999887665421       1124566666665543   22357899999999998765444


Q ss_pred             ---HHHHHHHHhcCCCeEEEEEEE
Q 032462           81 ---PLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        81 ---~L~~tl~~ll~~~~~~~~~~~  101 (140)
                         .+++.+.++++|+|.+++...
T Consensus       119 ~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A          119 ERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHcCCCeEEEEEEC
Confidence               888888999999999988643

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.24  E-value=6.4e-06  Score=58.29  Aligned_cols=83  Identities=14%  Similarity=0.082  Sum_probs=68.3

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      |++|+..|. +..+..+++|+..+..           ..++.+...+..+.+   .....||+|+++.+++.-.....++
T Consensus        66 ~~~v~~~D~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~l~~~~~~~~~l  131 (219)
T 3dlc_A           66 DFSIRALDFSKHMNEIALKNIADANL-----------NDRIQIVQGDVHNIP---IEDNYADLIVSRGSVFFWEDVATAF  131 (219)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECBTTBCS---SCTTCEEEEEEESCGGGCSCHHHHH
T ss_pred             CCeEEEEECCHHHHHHHHHHHHhccc-----------cCceEEEEcCHHHCC---CCcccccEEEECchHhhccCHHHHH
Confidence            669999998 8899999999988764           256777777776532   2256899999999999888888899


Q ss_pred             HHHHHhcCCCeEEEEEEE
Q 032462           84 QTIFALSGPKTTILLGYE  101 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~  101 (140)
                      +.+.++++|+|.+++...
T Consensus       132 ~~~~~~L~pgG~l~~~~~  149 (219)
T 3dlc_A          132 REIYRILKSGGKTYIGGG  149 (219)
T ss_dssp             HHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHhCCCCCEEEEEec
Confidence            999999999999998753

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.24  E-value=6.2e-06  Score=59.65  Aligned_cols=110  Identities=14%  Similarity=0.028  Sum_probs=79.9

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc--
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--   77 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~--   77 (140)
                      ||..|++|+.+|. +..+..+++|+..+..           ..++++...|+.+...    ...||+|+++.+++.-.  
T Consensus        84 l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~~~  148 (235)
T 3lcc_A           84 MASPERFVVGLDISESALAKANETYGSSPK-----------AEYFSFVKEDVFTWRP----TELFDLIFDYVFFCAIEPE  148 (235)
T ss_dssp             HCBTTEEEEEECSCHHHHHHHHHHHTTSGG-----------GGGEEEECCCTTTCCC----SSCEEEEEEESSTTTSCGG
T ss_pred             HHhCCCeEEEEECCHHHHHHHHHHhhccCC-----------CcceEEEECchhcCCC----CCCeeEEEEChhhhcCCHH
Confidence            3567889999998 8899999998876432           2567888888876531    34899999999988644  


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEEEecCh--------hHHHHHHHHH-HhcCeEEeec
Q 032462           78 LLEPLLQTIFALSGPKTTILLGYEIRST--------SVHEQMLQMW-KSNFNVKLVP  125 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~~~R~~--------~~~~~F~~~~-~~~f~v~~v~  125 (140)
                      ....+++.+.++++|+|.+++..-....        -..+.+.+.+ +.||++..+.
T Consensus       149 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  205 (235)
T 3lcc_A          149 MRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVE  205 (235)
T ss_dssp             GHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred             HHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEE
Confidence            7888999999999999998765432210        1234556666 4699876653

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.23  E-value=7.2e-06  Score=56.90  Aligned_cols=106  Identities=18%  Similarity=0.222  Sum_probs=75.0

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe-ecccCc--c
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT-DVVYAE--H   77 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas-DviY~~--~   77 (140)
                      +..|++|+.+|. +..+..+++|+.                 ++.+...+..+.+   ....+||+|+++ +++..-  +
T Consensus        65 ~~~~~~v~~~D~~~~~~~~a~~~~~-----------------~~~~~~~d~~~~~---~~~~~~D~i~~~~~~~~~~~~~  124 (195)
T 3cgg_A           65 SKQGHDVLGTDLDPILIDYAKQDFP-----------------EARWVVGDLSVDQ---ISETDFDLIVSAGNVMGFLAED  124 (195)
T ss_dssp             HHTTCEEEEEESCHHHHHHHHHHCT-----------------TSEEEECCTTTSC---CCCCCEEEEEECCCCGGGSCHH
T ss_pred             HHCCCcEEEEcCCHHHHHHHHHhCC-----------------CCcEEEcccccCC---CCCCceeEEEECCcHHhhcChH
Confidence            345789999998 778888887651                 2345555555432   124689999998 776543  4


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecCC
Q 032462           78 LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKA  127 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~~  127 (140)
                      ....+++.+.++++|+|.+++....+..-....+.+.+ +.||.+..+...
T Consensus       125 ~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  175 (195)
T 3cgg_A          125 GREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFES  175 (195)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESS
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecc
Confidence            55788888889999999999887765432356777777 469998887554

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.20  E-value=1.3e-05  Score=60.57  Aligned_cols=84  Identities=6%  Similarity=-0.137  Sum_probs=68.2

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      |++|+..|. +..+...++|+..++.           ..++.+..-|..+.+   .....||+|++.+++..-. ...++
T Consensus       140 ~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~---~~~~~fD~V~~~~~l~~~~-~~~~l  204 (312)
T 3vc1_A          140 GSRVEGVTLSAAQADFGNRRARELRI-----------DDHVRSRVCNMLDTP---FDKGAVTASWNNESTMYVD-LHDLF  204 (312)
T ss_dssp             CCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSCC---CCTTCEEEEEEESCGGGSC-HHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCceEEEECChhcCC---CCCCCEeEEEECCchhhCC-HHHHH
Confidence            889999998 8899999999998864           246777777776432   2347899999999998775 88899


Q ss_pred             HHHHHhcCCCeEEEEEEEec
Q 032462           84 QTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~~R  103 (140)
                      +.+.++++|+|.+++.....
T Consensus       205 ~~~~~~LkpgG~l~~~~~~~  224 (312)
T 3vc1_A          205 SEHSRFLKVGGRYVTITGCW  224 (312)
T ss_dssp             HHHHHHEEEEEEEEEEEEEE
T ss_pred             HHHHHHcCCCcEEEEEEccc
Confidence            99999999999998876544

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.19  E-value=9.1e-06  Score=56.83  Aligned_cols=84  Identities=17%  Similarity=0.163  Sum_probs=65.5

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc--c
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--L   78 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~--~   78 (140)
                      |..|++|+..|. +..+..+++|+..+..            .++.+...|..+.+   . ...||+|+++.+++.-.  .
T Consensus        51 ~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~~---~-~~~~D~v~~~~~l~~~~~~~  114 (199)
T 2xvm_A           51 AANGYDVDAWDKNAMSIANVERIKSIENL------------DNLHTRVVDLNNLT---F-DRQYDFILSTVVLMFLEAKT  114 (199)
T ss_dssp             HHTTCEEEEEESCHHHHHHHHHHHHHHTC------------TTEEEEECCGGGCC---C-CCCEEEEEEESCGGGSCGGG
T ss_pred             HHCCCeEEEEECCHHHHHHHHHHHHhCCC------------CCcEEEEcchhhCC---C-CCCceEEEEcchhhhCCHHH
Confidence            445889999998 8899999999987653            34677776665432   2 56899999999988643  7


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEE
Q 032462           79 LEPLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      ...+++.+.++++|+|.+++...
T Consensus       115 ~~~~l~~~~~~L~~gG~l~~~~~  137 (199)
T 2xvm_A          115 IPGLIANMQRCTKPGGYNLIVAA  137 (199)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCeEEEEEEe
Confidence            78899999999999999776543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.18  E-value=9e-06  Score=59.36  Aligned_cols=81  Identities=9%  Similarity=0.093  Sum_probs=63.0

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      +..|+ +|+.+|. +..+...+++..               ..++.+...+..+.   +.....||+|+++.+++.-...
T Consensus        63 ~~~~~~~v~~vD~s~~~~~~a~~~~~---------------~~~~~~~~~d~~~~---~~~~~~fD~v~~~~~l~~~~~~  124 (253)
T 3g5l_A           63 AEHGAKKVLGIDLSERMLTEAKRKTT---------------SPVVCYEQKAIEDI---AIEPDAYNVVLSSLALHYIASF  124 (253)
T ss_dssp             HHTTCSEEEEEESCHHHHHHHHHHCC---------------CTTEEEEECCGGGC---CCCTTCEEEEEEESCGGGCSCH
T ss_pred             HHcCCCEEEEEECCHHHHHHHHHhhc---------------cCCeEEEEcchhhC---CCCCCCeEEEEEchhhhhhhhH
Confidence            45677 9999998 778888887764               13556666665432   2235789999999999887778


Q ss_pred             HHHHHHHHHhcCCCeEEEEEE
Q 032462           80 EPLLQTIFALSGPKTTILLGY  100 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~  100 (140)
                      ..+++.+.++++|+|.++++.
T Consensus       125 ~~~l~~~~~~LkpgG~l~~~~  145 (253)
T 3g5l_A          125 DDICKKVYINLKSSGSFIFSV  145 (253)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCcEEEEEe
Confidence            899999999999999998873

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.18  E-value=2.4e-05  Score=55.07  Aligned_cols=107  Identities=19%  Similarity=0.142  Sum_probs=74.5

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      +..|++|+..|. +..+..++++...+..             ++.+...|..+.+   .....||+|+++.+.+..+...
T Consensus        48 ~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~~---~~~~~fD~v~~~~~~~~~~~~~  111 (202)
T 2kw5_A           48 ASLGYEVTAVDQSSVGLAKAKQLAQEKGV-------------KITTVQSNLADFD---IVADAWEGIVSIFCHLPSSLRQ  111 (202)
T ss_dssp             HTTTCEEEEECSSHHHHHHHHHHHHHHTC-------------CEEEECCBTTTBS---CCTTTCSEEEEECCCCCHHHHH
T ss_pred             HhCCCeEEEEECCHHHHHHHHHHHHhcCC-------------ceEEEEcChhhcC---CCcCCccEEEEEhhcCCHHHHH
Confidence            456889999998 7899999999877642             4555555555432   2246899999976655445678


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEecChh--------------HHHHHHHHHHhcCeEEeec
Q 032462           81 PLLQTIFALSGPKTTILLGYEIRSTS--------------VHEQMLQMWKSNFNVKLVP  125 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~R~~~--------------~~~~F~~~~~~~f~v~~v~  125 (140)
                      .+++.+.++++|+|.+++....+...              +.+.+.+.++ ||++..+.
T Consensus       112 ~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-Gf~v~~~~  169 (202)
T 2kw5_A          112 QLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP-SLNWLIAN  169 (202)
T ss_dssp             HHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS-SSCEEEEE
T ss_pred             HHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc-CceEEEEE
Confidence            88888999999999998876533210              1344455556 99877654

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.17  E-value=4.5e-05  Score=54.37  Aligned_cols=121  Identities=12%  Similarity=0.089  Sum_probs=79.2

Q ss_pred             ccCC--CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc-
Q 032462            2 ALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-   77 (140)
Q Consensus         2 A~lG--a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~-   77 (140)
                      +..|  ++|+..|. +..+...++|+..+.....       ...++.+..-|+...+   ....+||+|++++++..-. 
T Consensus        48 ~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-------~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~~l~~~~~  117 (219)
T 3jwg_A           48 LKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEM-------QRKRISLFQSSLVYRD---KRFSGYDAATVIEVIEHLDE  117 (219)
T ss_dssp             HTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHH-------HHTTEEEEECCSSSCC---GGGTTCSEEEEESCGGGCCH
T ss_pred             HhcCCCCEEEEEECCHHHHHHHHHHHHhhccccc-------cCcceEEEeCcccccc---cccCCCCEEEEHHHHHhCCH
Confidence            3445  59999998 8899999999987754210       1136777777763322   2246899999999998754 


Q ss_pred             -chHHHHHHHHHhcCCCeEEEEEEEecC-----------------------hhHHHHHHHH-H-HhcCeEEeecCCCCCc
Q 032462           78 -LLEPLLQTIFALSGPKTTILLGYEIRS-----------------------TSVHEQMLQM-W-KSNFNVKLVPKAKEST  131 (140)
Q Consensus        78 -~~~~L~~tl~~ll~~~~~~~~~~~~R~-----------------------~~~~~~F~~~-~-~~~f~v~~v~~~~l~~  131 (140)
                       ....+++.+.++++|+|.++.. ..+.                       ...+..+++. + +.||+++..+.-.-++
T Consensus       118 ~~~~~~l~~~~~~LkpgG~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~~~  196 (219)
T 3jwg_A          118 NRLQAFEKVLFEFTRPQTVIVST-PNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQIGEIDD  196 (219)
T ss_dssp             HHHHHHHHHHHTTTCCSEEEEEE-EBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEEEESCCCT
T ss_pred             HHHHHHHHHHHHhhCCCEEEEEc-cchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEEEEecCCccc
Confidence             4468888899999999955443 3221                       1123344444 3 4599988875555444


Q ss_pred             cc
Q 032462          132 MW  133 (140)
Q Consensus       132 ~~  133 (140)
                      .+
T Consensus       197 ~~  198 (219)
T 3jwg_A          197 EF  198 (219)
T ss_dssp             TS
T ss_pred             cC
Confidence            43

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.17  E-value=1.4e-05  Score=56.96  Aligned_cols=104  Identities=10%  Similarity=-0.014  Sum_probs=78.2

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      ++|+..|. +..+...++++..+..            .++.+...+..+.+   .....||+|+++.+++.-.....+++
T Consensus        63 ~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~  127 (219)
T 3dh0_A           63 GKVYAIDVQEEMVNYAWEKVNKLGL------------KNVEVLKSEENKIP---LPDNTVDFIFMAFTFHELSEPLKFLE  127 (219)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHTC------------TTEEEEECBTTBCS---SCSSCEEEEEEESCGGGCSSHHHHHH
T ss_pred             cEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEecccccCC---CCCCCeeEEEeehhhhhcCCHHHHHH
Confidence            69999998 8899999999988753            35777777775432   23468999999999998877888999


Q ss_pred             HHHHhcCCCeEEEEEEEecCh----------hHHHHHHHHH-HhcCeEEee
Q 032462           85 TIFALSGPKTTILLGYEIRST----------SVHEQMLQMW-KSNFNVKLV  124 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R~~----------~~~~~F~~~~-~~~f~v~~v  124 (140)
                      .+.++++|+|.+++.......          -..+.+.+.+ +.||++.++
T Consensus       128 ~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  178 (219)
T 3dh0_A          128 ELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRV  178 (219)
T ss_dssp             HHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEE
Confidence            999999999999887543221          0135666666 469986554

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.16  E-value=3.6e-05  Score=54.42  Aligned_cols=101  Identities=12%  Similarity=0.086  Sum_probs=72.9

Q ss_pred             ccCC--CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccc
Q 032462            2 ALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL   78 (140)
Q Consensus         2 A~lG--a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~   78 (140)
                      |+.|  ++|+..|. ++.+..+++|++.++.            .++.+..-++.+...   ....||+|+.....+   .
T Consensus        59 a~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~~---~~~~~D~i~~~~~~~---~  120 (204)
T 3e05_A           59 SNLMPNGRIFALERNPQYLGFIRDNLKKFVA------------RNVTLVEAFAPEGLD---DLPDPDRVFIGGSGG---M  120 (204)
T ss_dssp             HHHCTTSEEEEEECCHHHHHHHHHHHHHHTC------------TTEEEEECCTTTTCT---TSCCCSEEEESCCTT---C
T ss_pred             HHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CcEEEEeCChhhhhh---cCCCCCEEEECCCCc---C
Confidence            3445  69999998 8899999999998763            356666666543321   126799999887665   6


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEE
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVK  122 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~  122 (140)
                      ...+++.+.++++|+|.+++......  ..+.+.+.+ +.||.++
T Consensus       121 ~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~l~~~g~~~~  163 (204)
T 3e05_A          121 LEEIIDAVDRRLKSEGVIVLNAVTLD--TLTKAVEFLEDHGYMVE  163 (204)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEEECBHH--HHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHhcCCCeEEEEEecccc--cHHHHHHHHHHCCCcee
Confidence            67888999999999999988765443  345666766 4587543

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.16  E-value=1.7e-05  Score=54.49  Aligned_cols=99  Identities=11%  Similarity=0.065  Sum_probs=73.9

Q ss_pred             cCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHH
Q 032462            3 LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEP   81 (140)
Q Consensus         3 ~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~   81 (140)
                      ..+.+|+..|. +..+..+++|++.|+.            .++.+..-|+.+.  .+  ...||+|++..+    .....
T Consensus        55 ~~~~~v~~vD~~~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~--~~--~~~~D~i~~~~~----~~~~~  114 (183)
T 2yxd_A           55 KRCKFVYAIDYLDGAIEVTKQNLAKFNI------------KNCQIIKGRAEDV--LD--KLEFNKAFIGGT----KNIEK  114 (183)
T ss_dssp             TTSSEEEEEECSHHHHHHHHHHHHHTTC------------CSEEEEESCHHHH--GG--GCCCSEEEECSC----SCHHH
T ss_pred             hcCCeEEEEeCCHHHHHHHHHHHHHcCC------------CcEEEEECCcccc--cc--CCCCcEEEECCc----ccHHH
Confidence            44569999998 8899999999988763            3577777777652  22  268999999988    66778


Q ss_pred             HHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEEeec
Q 032462           82 LLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVP  125 (140)
Q Consensus        82 L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~v~  125 (140)
                      +++.+.++  |+|.+++......  ....+.+.++ .||.++.+.
T Consensus       115 ~l~~~~~~--~gG~l~~~~~~~~--~~~~~~~~l~~~g~~~~~~~  155 (183)
T 2yxd_A          115 IIEILDKK--KINHIVANTIVLE--NAAKIINEFESRGYNVDAVN  155 (183)
T ss_dssp             HHHHHHHT--TCCEEEEEESCHH--HHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHhhC--CCCEEEEEecccc--cHHHHHHHHHHcCCeEEEEE
Confidence            88888888  9999988775433  3556777774 588887663

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.16  E-value=1.3e-05  Score=58.48  Aligned_cols=84  Identities=13%  Similarity=-0.003  Sum_probs=68.6

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL   82 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L   82 (140)
                      .|++|+..|. +..+...++|++.++.           ..++.+...++.+.+   . ...||+|++..+++.-.....+
T Consensus        58 ~~~~v~gvD~s~~~l~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~---~-~~~fD~V~~~~~~~~~~~~~~~  122 (256)
T 1nkv_A           58 HGITGTGIDMSSLFTAQAKRRAEELGV-----------SERVHFIHNDAAGYV---A-NEKCDVAACVGATWIAGGFAGA  122 (256)
T ss_dssp             TCCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCCTTCC---C-SSCEEEEEEESCGGGTSSSHHH
T ss_pred             cCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CcceEEEECChHhCC---c-CCCCCEEEECCChHhcCCHHHH
Confidence            3789999998 8899999999987653           246888888887643   2 5689999999999887677888


Q ss_pred             HHHHHHhcCCCeEEEEEEEe
Q 032462           83 LQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~  102 (140)
                      ++.+.++++|+|.+++....
T Consensus       123 l~~~~r~LkpgG~l~~~~~~  142 (256)
T 1nkv_A          123 EELLAQSLKPGGIMLIGEPY  142 (256)
T ss_dssp             HHHHTTSEEEEEEEEEEEEE
T ss_pred             HHHHHHHcCCCeEEEEecCc
Confidence            89999999999999887643

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.14  E-value=2.5e-05  Score=56.71  Aligned_cols=86  Identities=9%  Similarity=-0.042  Sum_probs=68.1

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      +..|.+|+..|. +..+..+++|+..++.            .++.+...++.+.   +.....||+|+++.+++.-....
T Consensus        40 ~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~---~~~~~~fD~v~~~~~l~~~~~~~  104 (239)
T 1xxl_A           40 SPYVQECIGVDATKEMVEVASSFAQEKGV------------ENVRFQQGTAESL---PFPDDSFDIITCRYAAHHFSDVR  104 (239)
T ss_dssp             GGGSSEEEEEESCHHHHHHHHHHHHHHTC------------CSEEEEECBTTBC---CSCTTCEEEEEEESCGGGCSCHH
T ss_pred             HHhCCEEEEEECCHHHHHHHHHHHHHcCC------------CCeEEEecccccC---CCCCCcEEEEEECCchhhccCHH
Confidence            456779999998 8899999999987753            3567777776543   22346899999999998877778


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEe
Q 032462           81 PLLQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~  102 (140)
                      .+++.+.++++|+|.+++....
T Consensus       105 ~~l~~~~~~LkpgG~l~~~~~~  126 (239)
T 1xxl_A          105 KAVREVARVLKQDGRFLLVDHY  126 (239)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHcCCCcEEEEEEcC
Confidence            8999999999999999886543

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.11  E-value=1.5e-05  Score=55.17  Aligned_cols=102  Identities=17%  Similarity=0.139  Sum_probs=73.1

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC-ccch
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-EHLL   79 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~-~~~~   79 (140)
                      +..|++|+..|. +..+..+++|+..+...          ..++.+...++.+...    ..+||+|++....+. ....
T Consensus        71 ~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~----------~~~~~~~~~d~~~~~~----~~~~D~v~~~~~~~~~~~~~  136 (194)
T 1dus_A           71 ADEVKSTTMADINRRAIKLAKENIKLNNLD----------NYDIRVVHSDLYENVK----DRKYNKIITNPPIRAGKEVL  136 (194)
T ss_dssp             GGGSSEEEEEESCHHHHHHHHHHHHHTTCT----------TSCEEEEECSTTTTCT----TSCEEEEEECCCSTTCHHHH
T ss_pred             HHcCCeEEEEECCHHHHHHHHHHHHHcCCC----------ccceEEEECchhcccc----cCCceEEEECCCcccchhHH
Confidence            344779999998 88999999999887531          1147888888876422    468999998655443 3566


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcC
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNF  119 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f  119 (140)
                      ..+++.+.++++|+|.+++....+..  ...+.+.+++.|
T Consensus       137 ~~~l~~~~~~L~~gG~l~~~~~~~~~--~~~~~~~l~~~~  174 (194)
T 1dus_A          137 HRIIEEGKELLKDNGEIWVVIQTKQG--AKSLAKYMKDVF  174 (194)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEESTHH--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCEEEEEECCCCC--hHHHHHHHHHHh
Confidence            78888889999999999988776543  344555554433

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.11  E-value=2.3e-05  Score=57.70  Aligned_cols=86  Identities=12%  Similarity=-0.014  Sum_probs=68.6

Q ss_pred             ccCC-CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            2 ALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lG-a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      |..+ ++|+.+|. +..+..+++|+..++.           .+++++...|+.+.+   ....+||+|++..+++.- ..
T Consensus        65 a~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~---~~~~~fD~i~~~~~~~~~-~~  129 (267)
T 3kkz_A           65 AGHVTGQVTGLDFLSGFIDIFNRNARQSGL-----------QNRVTGIVGSMDDLP---FRNEELDLIWSEGAIYNI-GF  129 (267)
T ss_dssp             HTTCSSEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSCC---CCTTCEEEEEESSCGGGT-CH
T ss_pred             HhccCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CcCcEEEEcChhhCC---CCCCCEEEEEEcCCceec-CH
Confidence            3444 49999998 8899999999988754           356888888886543   225789999999999887 56


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEe
Q 032462           80 EPLLQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~  102 (140)
                      ..+++.+.++++|+|.+++....
T Consensus       130 ~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          130 ERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             HHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEEEee
Confidence            78888899999999999887654

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.11  E-value=1.1e-05  Score=59.68  Aligned_cols=102  Identities=18%  Similarity=0.144  Sum_probs=72.6

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      +++|++|+..|. +..+...++|+..|..            . +.+..-++.+.  .  ...+||+|++. .++  ....
T Consensus       139 a~~g~~v~gvDi~~~~v~~a~~n~~~~~~------------~-v~~~~~d~~~~--~--~~~~fD~Vv~n-~~~--~~~~  198 (254)
T 2nxc_A          139 EKLGGKALGVDIDPMVLPQAEANAKRNGV------------R-PRFLEGSLEAA--L--PFGPFDLLVAN-LYA--ELHA  198 (254)
T ss_dssp             HHTTCEEEEEESCGGGHHHHHHHHHHTTC------------C-CEEEESCHHHH--G--GGCCEEEEEEE-CCH--HHHH
T ss_pred             HHhCCeEEEEECCHHHHHHHHHHHHHcCC------------c-EEEEECChhhc--C--cCCCCCEEEEC-CcH--HHHH
Confidence            567889999998 8899999999998864            1 55555455432  1  13589999974 322  2456


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeec
Q 032462           81 PLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVP  125 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~  125 (140)
                      .++..+..+++|+|.++++......  .+.+.+.+ +.||.+.++.
T Consensus       199 ~~l~~~~~~LkpgG~lils~~~~~~--~~~v~~~l~~~Gf~~~~~~  242 (254)
T 2nxc_A          199 ALAPRYREALVPGGRALLTGILKDR--APLVREAMAGAGFRPLEEA  242 (254)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEEGGG--HHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHcCCCCEEEEEeeccCC--HHHHHHHHHHCCCEEEEEe
Confidence            7788888889999999887665543  35566666 4589987654

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.11  E-value=5.3e-05  Score=54.02  Aligned_cols=118  Identities=14%  Similarity=0.146  Sum_probs=77.6

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc--chHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--LLEPL   82 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~--~~~~L   82 (140)
                      ++|+..|. +..+...++|+..+.....       ...++.+..-+....+   ....+||+|++.++++.-.  ....+
T Consensus        54 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~-------~~~~v~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~~~  123 (217)
T 3jwh_A           54 EQITGVDVSYRSLEIAQERLDRLRLPRN-------QWERLQLIQGALTYQD---KRFHGYDAATVIEVIEHLDLSRLGAF  123 (217)
T ss_dssp             SEEEEEESCHHHHHHHHHHHTTCCCCHH-------HHTTEEEEECCTTSCC---GGGCSCSEEEEESCGGGCCHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHhcCCcc-------cCcceEEEeCCccccc---ccCCCcCEEeeHHHHHcCCHHHHHHH
Confidence            59999998 8899999999876653210       0136777776664322   2246899999999998543  55788


Q ss_pred             HHHHHHhcCCCeEEEEEEEec----------------------ChhHHHHHHHHH-H-hcCeEEeecCCCCCccc
Q 032462           83 LQTIFALSGPKTTILLGYEIR----------------------STSVHEQMLQMW-K-SNFNVKLVPKAKESTMW  133 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~R----------------------~~~~~~~F~~~~-~-~~f~v~~v~~~~l~~~~  133 (140)
                      ++.+.++++|+|.+++.....                      ....+..+++.+ + .||+++..+.-..++..
T Consensus       124 l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~~~~~g~~~~~~  198 (217)
T 3jwh_A          124 ERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQFQPIGEADPEV  198 (217)
T ss_dssp             HHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEEEECCCSCCCSSS
T ss_pred             HHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceEEEEecCCccCCC
Confidence            999999999999665443211                      111233444444 3 59999887665555443

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.10  E-value=5.5e-05  Score=56.78  Aligned_cols=82  Identities=15%  Similarity=0.095  Sum_probs=65.9

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc-------
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-------   76 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~-------   76 (140)
                      |++|+..|. +..+...++++..++.           ..++.+..-|+.+.      ...||+|++..++..-       
T Consensus        95 ~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~------~~~fD~v~~~~~~~~~~d~~~~~  157 (302)
T 3hem_A           95 DVNVIGLTLSENQYAHDKAMFDEVDS-----------PRRKEVRIQGWEEF------DEPVDRIVSLGAFEHFADGAGDA  157 (302)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHSCC-----------SSCEEEEECCGGGC------CCCCSEEEEESCGGGTTCCSSCC
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECCHHHc------CCCccEEEEcchHHhcCcccccc
Confidence            889999998 8899999999987653           24677777777432      5789999999988654       


Q ss_pred             --cchHHHHHHHHHhcCCCeEEEEEEEec
Q 032462           77 --HLLEPLLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        77 --~~~~~L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                        +....+++.+.++++|+|.+++....+
T Consensus       158 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  186 (302)
T 3hem_A          158 GFERYDTFFKKFYNLTPDDGRMLLHTITI  186 (302)
T ss_dssp             CTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred             chhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence              445789999999999999998876654

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.07  E-value=2e-05  Score=57.50  Aligned_cols=124  Identities=14%  Similarity=0.137  Sum_probs=77.5

Q ss_pred             CccCCC-EEEEecc-hhHHHHHHHHHHHhhcccc---------cCCCCCC--------CCCce-EEEEeecCCCcccc-c
Q 032462            1 MALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRIS---------QMNPGSD--------LLGSI-QAVELDWGNEDHIK-A   59 (140)
Q Consensus         1 lA~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~---------~~~~~~~--------~~~~v-~~~~LdWg~~~~~~-~   59 (140)
                      ||..|+ +|+.+|. +..+..+++++..+.....         ...+...        ...++ .+...|..+....+ .
T Consensus        74 l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~  153 (265)
T 2i62_A           74 SACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGV  153 (265)
T ss_dssp             TGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTC
T ss_pred             HhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCcc
Confidence            456787 9999998 7889999988765431000         0000000        00126 67777776543211 1


Q ss_pred             cCCCccEEEEeeccc----CccchHHHHHHHHHhcCCCeEEEEEEEe--------------cChhHHHHHHHHH-HhcCe
Q 032462           60 VAPPFDYIIGTDVVY----AEHLLEPLLQTIFALSGPKTTILLGYEI--------------RSTSVHEQMLQMW-KSNFN  120 (140)
Q Consensus        60 ~~~~~D~IlasDviY----~~~~~~~L~~tl~~ll~~~~~~~~~~~~--------------R~~~~~~~F~~~~-~~~f~  120 (140)
                      ....||+|+++.++.    .......+++.+.++++|+|.+++....              +.. ..+.+.+.+ +.||.
T Consensus       154 ~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~aGf~  232 (265)
T 2i62_A          154 SLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPL-GWETVRDAVEEAGYT  232 (265)
T ss_dssp             CCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCC-CHHHHHHHHHHTTCE
T ss_pred             ccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccccccc-CHHHHHHHHHHCCCE
Confidence            226899999999998    5556777888888899999999886521              111 134555666 46998


Q ss_pred             EEeec
Q 032462          121 VKLVP  125 (140)
Q Consensus       121 v~~v~  125 (140)
                      +..+.
T Consensus       233 ~~~~~  237 (265)
T 2i62_A          233 IEQFE  237 (265)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76654

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.07  E-value=2.9e-05  Score=56.54  Aligned_cols=82  Identities=10%  Similarity=0.047  Sum_probs=66.5

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      ++|+.+|. +..+..+++|+..++.           ..++.+..-|+.+.+   ....+||+|++..+++.- ..+.+++
T Consensus        70 ~~v~~vD~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~-~~~~~l~  134 (257)
T 3f4k_A           70 GQITGIDLFPDFIEIFNENAVKANC-----------ADRVKGITGSMDNLP---FQNEELDLIWSEGAIYNI-GFERGMN  134 (257)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSCS---SCTTCEEEEEEESCSCCC-CHHHHHH
T ss_pred             CeEEEEECCHHHHHHHHHHHHHcCC-----------CCceEEEECChhhCC---CCCCCEEEEEecChHhhc-CHHHHHH
Confidence            49999998 8899999999988764           246888888885432   225789999999999887 4778889


Q ss_pred             HHHHhcCCCeEEEEEEEe
Q 032462           85 TIFALSGPKTTILLGYEI  102 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~  102 (140)
                      .+.++++|+|.+++....
T Consensus       135 ~~~~~L~pgG~l~~~~~~  152 (257)
T 3f4k_A          135 EWSKYLKKGGFIAVSEAS  152 (257)
T ss_dssp             HHHTTEEEEEEEEEEEEE
T ss_pred             HHHHHcCCCcEEEEEEee
Confidence            999999999999887653

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.07  E-value=2.2e-05  Score=57.87  Aligned_cols=108  Identities=12%  Similarity=0.103  Sum_probs=73.9

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc---
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---   76 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~---   76 (140)
                      |..|. +|+..|. +..+..+++|+..|..           ..++++..-|+.+... .....+||+|++.-..|..   
T Consensus        68 a~~~~~~v~gvDi~~~~~~~a~~n~~~~~~-----------~~~v~~~~~D~~~~~~-~~~~~~fD~Ii~npPy~~~~~~  135 (259)
T 3lpm_A           68 STRTKAKIVGVEIQERLADMAKRSVAYNQL-----------EDQIEIIEYDLKKITD-LIPKERADIVTCNPPYFATPDT  135 (259)
T ss_dssp             HTTCCCEEEEECCSHHHHHHHHHHHHHTTC-----------TTTEEEECSCGGGGGG-TSCTTCEEEEEECCCC------
T ss_pred             HHhcCCcEEEEECCHHHHHHHHHHHHHCCC-----------cccEEEEECcHHHhhh-hhccCCccEEEECCCCCCCccc
Confidence            44555 9999998 8899999999999875           2467777777765432 1125789999975443333   


Q ss_pred             -----------------cchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEEee
Q 032462           77 -----------------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV  124 (140)
Q Consensus        77 -----------------~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~v  124 (140)
                                       ...+.+++.+..+++|+|.+++......   ...+.+.++ .+|...++
T Consensus       136 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~l~~~~~~~~~~  198 (259)
T 3lpm_A          136 SLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPER---LLDIIDIMRKYRLEPKRI  198 (259)
T ss_dssp             -----------------HHHHHHHHHHHHHEEEEEEEEEEECTTT---HHHHHHHHHHTTEEEEEE
T ss_pred             cCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHH---HHHHHHHHHHCCCceEEE
Confidence                             2245688888899999999998654322   455666664 57775543

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.07  E-value=1.8e-05  Score=57.67  Aligned_cols=105  Identities=10%  Similarity=-0.018  Sum_probs=72.2

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL   82 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L   82 (140)
                      .|++|+..|. +..+..+++|++.++.            .++++..-+..+....+....+||+|++..+    .....+
T Consensus        93 ~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~----~~~~~~  156 (240)
T 1xdz_A           93 PHLHVTIVDSLNKRITFLEKLSEALQL------------ENTTFCHDRAETFGQRKDVRESYDIVTARAV----ARLSVL  156 (240)
T ss_dssp             TTCEEEEEESCHHHHHHHHHHHHHHTC------------SSEEEEESCHHHHTTCTTTTTCEEEEEEECC----SCHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHcCC------------CCEEEEeccHHHhcccccccCCccEEEEecc----CCHHHH
Confidence            4679999998 8899999999998863            2466666555332110112468999998663    346788


Q ss_pred             HHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEEee
Q 032462           83 LQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV  124 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~v  124 (140)
                      ++.+..+++|+|.+++....+..+....+.+.++ .||.+.++
T Consensus       157 l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~  199 (240)
T 1xdz_A          157 SELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENI  199 (240)
T ss_dssp             HHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEE
T ss_pred             HHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEE
Confidence            8888889999999988655454444455666664 58876554

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.07  E-value=6.3e-05  Score=55.84  Aligned_cols=84  Identities=14%  Similarity=0.139  Sum_probs=66.0

Q ss_pred             cCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cch
Q 032462            3 LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLL   79 (140)
Q Consensus         3 ~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~   79 (140)
                      ..|++|+..|. ++.+...++++..++.           ..++.+..-|+.+   .+   ..||+|++.+++..-  ...
T Consensus        85 ~~~~~v~gvd~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~---~~---~~fD~v~~~~~l~~~~~~~~  147 (287)
T 1kpg_A           85 KYDVNVVGLTLSKNQANHVQQLVANSEN-----------LRSKRVLLAGWEQ---FD---EPVDRIVSIGAFEHFGHERY  147 (287)
T ss_dssp             HHCCEEEEEESCHHHHHHHHHHHHTCCC-----------CSCEEEEESCGGG---CC---CCCSEEEEESCGGGTCTTTH
T ss_pred             HcCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCCeEEEECChhh---CC---CCeeEEEEeCchhhcChHHH
Confidence            45889999998 8899999988876542           2467777766642   22   689999999998764  677


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEec
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      ..+++.+.++++|+|.+++....+
T Consensus       148 ~~~l~~~~~~LkpgG~l~~~~~~~  171 (287)
T 1kpg_A          148 DAFFSLAHRLLPADGVMLLHTITG  171 (287)
T ss_dssp             HHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             HHHHHHHHHhcCCCCEEEEEEecC
Confidence            889999999999999998876654

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.05  E-value=4e-05  Score=57.24  Aligned_cols=85  Identities=8%  Similarity=0.001  Sum_probs=68.5

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      |++|+..|. +..+...++++..++.           ..++.+...++.+.+   .....||+|++.++++.-.....++
T Consensus       105 ~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l  170 (297)
T 2o57_A          105 GVSIDCLNIAPVQNKRNEEYNNQAGL-----------ADNITVKYGSFLEIP---CEDNSYDFIWSQDAFLHSPDKLKVF  170 (297)
T ss_dssp             CCEEEEEESCHHHHHHHHHHHHHHTC-----------TTTEEEEECCTTSCS---SCTTCEEEEEEESCGGGCSCHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhcCC-----------CcceEEEEcCcccCC---CCCCCEeEEEecchhhhcCCHHHHH
Confidence            789999998 7899999998877653           256788877776532   2246899999999998876688999


Q ss_pred             HHHHHhcCCCeEEEEEEEec
Q 032462           84 QTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~~R  103 (140)
                      +.+.++++|+|.+++.....
T Consensus       171 ~~~~~~LkpgG~l~~~~~~~  190 (297)
T 2o57_A          171 QECARVLKPRGVMAITDPMK  190 (297)
T ss_dssp             HHHHHHEEEEEEEEEEEEEE
T ss_pred             HHHHHHcCCCeEEEEEEecc
Confidence            99999999999998876543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.05  E-value=5.9e-05  Score=51.74  Aligned_cols=103  Identities=9%  Similarity=-0.051  Sum_probs=70.7

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      |++|+..|. +..+..+++|+..+..           ..++ ...-+..+  ..+.....||+|+.+..++.    ..++
T Consensus        49 ~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~~-~~~~d~~~--~~~~~~~~~D~i~~~~~~~~----~~~l  110 (178)
T 3hm2_A           49 QTTAVCFEISEERRERILSNAINLGV-----------SDRI-AVQQGAPR--AFDDVPDNPDVIFIGGGLTA----PGVF  110 (178)
T ss_dssp             SEEEEEECSCHHHHHHHHHHHHTTTC-----------TTSE-EEECCTTG--GGGGCCSCCSEEEECC-TTC----TTHH
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHhCC-----------CCCE-EEecchHh--hhhccCCCCCEEEECCcccH----HHHH
Confidence            569999998 7899999999987753           1244 43333322  23322378999999888876    6788


Q ss_pred             HHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecCC
Q 032462           84 QTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKA  127 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~~  127 (140)
                      +.+.++++|+|.+++.......  ...+.+.+ +.++++.++...
T Consensus       111 ~~~~~~L~~gG~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  153 (178)
T 3hm2_A          111 AAAWKRLPVGGRLVANAVTVES--EQMLWALRKQFGGTISSFAIS  153 (178)
T ss_dssp             HHHHHTCCTTCEEEEEECSHHH--HHHHHHHHHHHCCEEEEEEEE
T ss_pred             HHHHHhcCCCCEEEEEeecccc--HHHHHHHHHHcCCeeEEEEee
Confidence            8888999999999877654432  34555555 357777765443

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.04  E-value=1.9e-05  Score=54.60  Aligned_cols=104  Identities=15%  Similarity=0.126  Sum_probs=73.7

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      +..+++|+..|. +..+..+++|+..+..           ..++.+...++.+.  .+. ...||+|+++.++   ....
T Consensus        52 ~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~--~~~-~~~~D~v~~~~~~---~~~~  114 (192)
T 1l3i_A           52 AGRVRRVYAIDRNPEAISTTEMNLQRHGL-----------GDNVTLMEGDAPEA--LCK-IPDIDIAVVGGSG---GELQ  114 (192)
T ss_dssp             HTTSSEEEEEESCHHHHHHHHHHHHHTTC-----------CTTEEEEESCHHHH--HTT-SCCEEEEEESCCT---TCHH
T ss_pred             HHhcCEEEEEECCHHHHHHHHHHHHHcCC-----------CcceEEEecCHHHh--ccc-CCCCCEEEECCch---HHHH
Confidence            345579999998 8899999999988753           24567766666541  111 2489999987665   3457


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEEee
Q 032462           81 PLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV  124 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~v  124 (140)
                      .+++.+.++++|+|.+++......  ....+.+.++ .||.++.+
T Consensus       115 ~~l~~~~~~l~~gG~l~~~~~~~~--~~~~~~~~l~~~g~~~~~~  157 (192)
T 1l3i_A          115 EILRIIKDKLKPGGRIIVTAILLE--TKFEAMECLRDLGFDVNIT  157 (192)
T ss_dssp             HHHHHHHHTEEEEEEEEEEECBHH--HHHHHHHHHHHTTCCCEEE
T ss_pred             HHHHHHHHhcCCCcEEEEEecCcc--hHHHHHHHHHHCCCceEEE
Confidence            888889999999999988765433  2456667674 57866543

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.03  E-value=7.9e-05  Score=54.53  Aligned_cols=86  Identities=13%  Similarity=0.044  Sum_probs=66.0

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      +..|.+|+..|. ++.+...++++..++.            .++.+..-|..+.   +.....||+|+++.++..-...+
T Consensus        56 ~~~~~~v~gvD~s~~~l~~a~~~~~~~~~------------~~v~~~~~d~~~l---~~~~~~fD~V~~~~~l~~~~d~~  120 (260)
T 1vl5_A           56 APFVKKVVAFDLTEDILKVARAFIEGNGH------------QQVEYVQGDAEQM---PFTDERFHIVTCRIAAHHFPNPA  120 (260)
T ss_dssp             GGGSSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEECCC-CC---CSCTTCEEEEEEESCGGGCSCHH
T ss_pred             HHhCCEEEEEeCCHHHHHHHHHHHHhcCC------------CceEEEEecHHhC---CCCCCCEEEEEEhhhhHhcCCHH
Confidence            456779999998 8899999999877653            3466666665443   22246899999999998777778


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEe
Q 032462           81 PLLQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~  102 (140)
                      .+++.+.++++|+|.+++....
T Consensus       121 ~~l~~~~r~LkpgG~l~~~~~~  142 (260)
T 1vl5_A          121 SFVSEAYRVLKKGGQLLLVDNS  142 (260)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHcCCCCEEEEEEcC
Confidence            8999999999999999886443

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.03  E-value=1.2e-05  Score=57.09  Aligned_cols=109  Identities=11%  Similarity=0.092  Sum_probs=73.3

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccc-ccCCCccEEEEeecccCccch
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-AVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~-~~~~~~D~IlasDviY~~~~~   79 (140)
                      +..|++|+..|. +..+...+++   ..               +.+...+..+....+ ....+||+|+++.+++ ....
T Consensus        71 ~~~~~~v~~vD~s~~~~~~a~~~---~~---------------~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~~~  131 (227)
T 3e8s_A           71 ADRGIEAVGVDGDRTLVDAARAA---GA---------------GEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQDI  131 (227)
T ss_dssp             HTTTCEEEEEESCHHHHHHHHHT---CS---------------SCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SSCC
T ss_pred             HHCCCEEEEEcCCHHHHHHHHHh---cc---------------cccchhhHHhhcccccccCCCccEEEECchhh-hhhH
Confidence            456889999998 7788888876   11               122222222221111 1235699999999999 7777


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEecC-----------------------------hhHHHHHHHHH-HhcCeEEeecCCCC
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIRS-----------------------------TSVHEQMLQMW-KSNFNVKLVPKAKE  129 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R~-----------------------------~~~~~~F~~~~-~~~f~v~~v~~~~l  129 (140)
                      ..+++.+.++++|+|.+++....+.                             ..+.+.+.+.+ +.||.+..+.....
T Consensus       132 ~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~  211 (227)
T 3e8s_A          132 IELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQEPQH  211 (227)
T ss_dssp             HHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEECCCC
T ss_pred             HHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEEecCCC
Confidence            8899999999999999998754211                             00246677777 46999988766443

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=97.99  E-value=9.7e-05  Score=53.51  Aligned_cols=110  Identities=11%  Similarity=-0.021  Sum_probs=75.6

Q ss_pred             CccCC-CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccc
Q 032462            1 MALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL   78 (140)
Q Consensus         1 lA~lG-a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~   78 (140)
                      |+..| .+|+..|. +..+..+++|+..+..            .++.+...++.+..   .....||+|++..+++.-..
T Consensus        97 l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~  161 (241)
T 2ex4_A           97 LLLPLFREVDMVDITEDFLVQAKTYLGEEGK------------RVRNYFCCGLQDFT---PEPDSYDVIWIQWVIGHLTD  161 (241)
T ss_dssp             TTTTTCSEEEEEESCHHHHHHHHHHTGGGGG------------GEEEEEECCGGGCC---CCSSCEEEEEEESCGGGSCH
T ss_pred             HHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC------------ceEEEEEcChhhcC---CCCCCEEEEEEcchhhhCCH
Confidence            34454 49999998 8899999988876531            34566666654332   12457999999998876433


Q ss_pred             --hHHHHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHH-HhcCeEEeec
Q 032462           79 --LEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMW-KSNFNVKLVP  125 (140)
Q Consensus        79 --~~~L~~tl~~ll~~~~~~~~~~~~R~~------------~~~~~F~~~~-~~~f~v~~v~  125 (140)
                        ...+++.+.++++|+|.+++.......            ...+.+.+.+ +.||++..+.
T Consensus       162 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  223 (241)
T 2ex4_A          162 QHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE  223 (241)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence              557888889999999999886542210            0245666666 4699977654

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.98  E-value=1.5e-05  Score=59.72  Aligned_cols=105  Identities=14%  Similarity=0.163  Sum_probs=72.6

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      |+.|+ +|+..|. +..+..+++|++.|+.           .+.+++..-|..+...    ...||+|+. |..   ...
T Consensus       144 a~~~~~~V~~vD~s~~~~~~a~~n~~~n~~-----------~~~v~~~~~D~~~~~~----~~~fD~Vi~-~~p---~~~  204 (278)
T 2frn_A          144 AVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----------EDRMSAYNMDNRDFPG----ENIADRILM-GYV---VRT  204 (278)
T ss_dssp             HHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----------TTTEEEECSCTTTCCC----CSCEEEEEE-CCC---SSG
T ss_pred             HHhCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CceEEEEECCHHHhcc----cCCccEEEE-CCc---hhH
Confidence            55677 6999998 8899999999999975           2346666666554422    568999987 333   333


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEecC----hhHHHHHHHHH-HhcCeEEeec
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIRS----TSVHEQMLQMW-KSNFNVKLVP  125 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R~----~~~~~~F~~~~-~~~f~v~~v~  125 (140)
                      ..++..+.++++|+|.+++......    ....+.+.+.+ +.||.++.+.
T Consensus       205 ~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~  255 (278)
T 2frn_A          205 HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLN  255 (278)
T ss_dssp             GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEEee
Confidence            5677778888999999887665532    12245555556 4588887643

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=97.98  E-value=0.00013  Score=53.67  Aligned_cols=85  Identities=8%  Similarity=-0.060  Sum_probs=68.4

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL   82 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L   82 (140)
                      .|++|+..|. +..+...++++..++.           ..++.+...|+.+.+   .....||+|++.++++.-.....+
T Consensus        83 ~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~  148 (273)
T 3bus_A           83 RDVRVTGISISRPQVNQANARATAAGL-----------ANRVTFSYADAMDLP---FEDASFDAVWALESLHHMPDRGRA  148 (273)
T ss_dssp             SCCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSCC---SCTTCEEEEEEESCTTTSSCHHHH
T ss_pred             cCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CcceEEEECccccCC---CCCCCccEEEEechhhhCCCHHHH
Confidence            4789999998 7899999999887653           246778777776532   224689999999999987777899


Q ss_pred             HHHHHHhcCCCeEEEEEEEe
Q 032462           83 LQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~  102 (140)
                      ++.+.++++|+|.+++....
T Consensus       149 l~~~~~~L~pgG~l~i~~~~  168 (273)
T 3bus_A          149 LREMARVLRPGGTVAIADFV  168 (273)
T ss_dssp             HHHHHTTEEEEEEEEEEEEE
T ss_pred             HHHHHHHcCCCeEEEEEEee
Confidence            99999999999999887654

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=97.97  E-value=2.6e-05  Score=58.01  Aligned_cols=84  Identities=17%  Similarity=0.239  Sum_probs=65.8

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--cc
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EH   77 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--~~   77 (140)
                      ||..|++|+..|. +..+..+++|+..|+.             ++.+...|..+...    ..+||+|+++.+++.  +.
T Consensus       138 l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~~~----~~~fD~i~~~~~~~~~~~~  200 (286)
T 3m70_A          138 LSLLGYDVTSWDHNENSIAFLNETKEKENL-------------NISTALYDINAANI----QENYDFIVSTVVFMFLNRE  200 (286)
T ss_dssp             HHHTTCEEEEEESCHHHHHHHHHHHHHTTC-------------CEEEEECCGGGCCC----CSCEEEEEECSSGGGSCGG
T ss_pred             HHHCCCeEEEEECCHHHHHHHHHHHHHcCC-------------ceEEEEeccccccc----cCCccEEEEccchhhCCHH
Confidence            3556889999998 8899999999988752             45666666654321    578999999999884  46


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEEE
Q 032462           78 LLEPLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      ....+++.+.++++|+|.+++...
T Consensus       201 ~~~~~l~~~~~~LkpgG~l~i~~~  224 (286)
T 3m70_A          201 RVPSIIKNMKEHTNVGGYNLIVAA  224 (286)
T ss_dssp             GHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEEe
Confidence            677899999999999999776554

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.96  E-value=2.7e-05  Score=55.09  Aligned_cols=102  Identities=17%  Similarity=0.156  Sum_probs=72.9

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      |+.|. +|+..|. +..+..+++|+..+..            .++.+...|+.+..     ..+||+|++.-..   ...
T Consensus        79 ~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~-----~~~fD~i~~~~~~---~~~  138 (205)
T 3grz_A           79 HKLGAKSVLATDISDESMTAAEENAALNGI------------YDIALQKTSLLADV-----DGKFDLIVANILA---EIL  138 (205)
T ss_dssp             HHTTCSEEEEEESCHHHHHHHHHHHHHTTC------------CCCEEEESSTTTTC-----CSCEEEEEEESCH---HHH
T ss_pred             HHCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CceEEEeccccccC-----CCCceEEEECCcH---HHH
Confidence            45666 9999998 8899999999998764            22788888876532     3689999986433   234


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeec
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVP  125 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~  125 (140)
                      ..+++.+.++++|+|.++++...+..  .+.+.+.+ +.||.+..+.
T Consensus       139 ~~~l~~~~~~L~~gG~l~~~~~~~~~--~~~~~~~~~~~Gf~~~~~~  183 (205)
T 3grz_A          139 LDLIPQLDSHLNEDGQVIFSGIDYLQ--LPKIEQALAENSFQIDLKM  183 (205)
T ss_dssp             HHHGGGSGGGEEEEEEEEEEEEEGGG--HHHHHHHHHHTTEEEEEEE
T ss_pred             HHHHHHHHHhcCCCCEEEEEecCccc--HHHHHHHHHHcCCceEEee
Confidence            56666667778899999887555543  34556666 4689877654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=97.96  E-value=2.9e-05  Score=55.06  Aligned_cols=103  Identities=14%  Similarity=0.148  Sum_probs=71.5

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc--c
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--L   78 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~--~   78 (140)
                      +..|++|+..|. +..+..+++|+  |..                +...+..+.   + ....||+|+++.+++.-.  .
T Consensus        62 ~~~~~~v~~vD~s~~~~~~a~~~~--~~~----------------~~~~d~~~~---~-~~~~fD~v~~~~~l~~~~~~~  119 (211)
T 3e23_A           62 LAAGFDVDATDGSPELAAEASRRL--GRP----------------VRTMLFHQL---D-AIDAYDAVWAHACLLHVPRDE  119 (211)
T ss_dssp             HHTTCEEEEEESCHHHHHHHHHHH--TSC----------------CEECCGGGC---C-CCSCEEEEEECSCGGGSCHHH
T ss_pred             HHcCCeEEEECCCHHHHHHHHHhc--CCc----------------eEEeeeccC---C-CCCcEEEEEecCchhhcCHHH
Confidence            456889999998 78899998887  211                111222211   1 256899999999998754  6


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHHH-hc-CeEEeecC
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWK-SN-FNVKLVPK  126 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~R~~------------~~~~~F~~~~~-~~-f~v~~v~~  126 (140)
                      ...+++.+.++++|+|.++++......            -+.+.+.+.++ .| |++..+..
T Consensus       120 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~  181 (211)
T 3e23_A          120 LADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVES  181 (211)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred             HHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence            778889999999999999988664331            02456666664 69 99776543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.96  E-value=0.00012  Score=52.21  Aligned_cols=104  Identities=13%  Similarity=0.088  Sum_probs=72.8

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      |+.|++|+..|. ++.+..+++|++.++.           ..++.+..-|..+.  .+ ....||+|+....+    ..+
T Consensus        74 a~~~~~v~~vD~s~~~~~~a~~~~~~~g~-----------~~~v~~~~~d~~~~--~~-~~~~~D~v~~~~~~----~~~  135 (204)
T 3njr_A           74 CLAGGRAITIEPRADRIENIQKNIDTYGL-----------SPRMRAVQGTAPAA--LA-DLPLPEAVFIGGGG----SQA  135 (204)
T ss_dssp             HHTTCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCTTGG--GT-TSCCCSEEEECSCC----CHH
T ss_pred             HHcCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCCEEEEeCchhhh--cc-cCCCCCEEEECCcc----cHH
Confidence            455889999998 8899999999998864           12566665554431  11 23579999965432    234


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecC
Q 032462           81 PLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK  126 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~  126 (140)
                       +++.+.+.++|+|.+++......  ....+.+.+ +.++++.++..
T Consensus       136 -~l~~~~~~LkpgG~lv~~~~~~~--~~~~~~~~l~~~g~~i~~i~~  179 (204)
T 3njr_A          136 -LYDRLWEWLAPGTRIVANAVTLE--SETLLTQLHARHGGQLLRIDI  179 (204)
T ss_dssp             -HHHHHHHHSCTTCEEEEEECSHH--HHHHHHHHHHHHCSEEEEEEE
T ss_pred             -HHHHHHHhcCCCcEEEEEecCcc--cHHHHHHHHHhCCCcEEEEEe
Confidence             88899999999999988765443  356667767 45888777644

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=97.92  E-value=3.9e-05  Score=57.52  Aligned_cols=87  Identities=14%  Similarity=0.113  Sum_probs=63.7

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe-ecccCc--c
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT-DVVYAE--H   77 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas-DviY~~--~   77 (140)
                      +..|++|+..|. +.++..+++++..+....         ..++.+...|..+.+.    ..+||+|+.+ .++...  +
T Consensus       101 ~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~---------~~~v~~~~~d~~~~~~----~~~fD~v~~~~~~~~~~~~~  167 (299)
T 3g2m_A          101 LDLGWEVTALELSTSVLAAFRKRLAEAPADV---------RDRCTLVQGDMSAFAL----DKRFGTVVISSGSINELDEA  167 (299)
T ss_dssp             HTTTCCEEEEESCHHHHHHHHHHHHTSCHHH---------HTTEEEEECBTTBCCC----SCCEEEEEECHHHHTTSCHH
T ss_pred             HHcCCeEEEEECCHHHHHHHHHHHhhccccc---------ccceEEEeCchhcCCc----CCCcCEEEECCcccccCCHH
Confidence            556889999998 889999999988764321         1467788877765431    5789999876 444332  2


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEEE
Q 032462           78 LLEPLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      ....+++.+.++++|+|.+++...
T Consensus       168 ~~~~~l~~~~~~L~pgG~l~~~~~  191 (299)
T 3g2m_A          168 DRRGLYASVREHLEPGGKFLLSLA  191 (299)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHcCCCcEEEEEee
Confidence            467888888899999999888654

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=97.92  E-value=4.7e-05  Score=53.61  Aligned_cols=105  Identities=10%  Similarity=0.034  Sum_probs=74.3

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc--c
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--L   78 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~--~   78 (140)
                      +..|++|+..|. +.++...++|.                 .++.+..-++.+.   +.....||+|++..+++.-.  .
T Consensus        60 ~~~~~~v~gvD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~---~~~~~~fD~v~~~~~l~~~~~~~  119 (203)
T 3h2b_A           60 ASLGHQIEGLEPATRLVELARQTH-----------------PSVTFHHGTITDL---SDSPKRWAGLLAWYSLIHMGPGE  119 (203)
T ss_dssp             HHTTCCEEEECCCHHHHHHHHHHC-----------------TTSEEECCCGGGG---GGSCCCEEEEEEESSSTTCCTTT
T ss_pred             HhcCCeEEEEeCCHHHHHHHHHhC-----------------CCCeEEeCccccc---ccCCCCeEEEEehhhHhcCCHHH
Confidence            456889999998 77888888761                 2345555555432   22357899999999988753  7


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEecCh-------------hHHHHHHHHH-HhcCeEEeecC
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEIRST-------------SVHEQMLQMW-KSNFNVKLVPK  126 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~R~~-------------~~~~~F~~~~-~~~f~v~~v~~  126 (140)
                      ...+++.+.++++|+|.+++.......             -+.+.+.+.+ +.||++..+..
T Consensus       120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  181 (203)
T 3h2b_A          120 LPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHW  181 (203)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEe
Confidence            788999999999999999987754321             1245666666 46999877643

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.92  E-value=0.00012  Score=55.32  Aligned_cols=83  Identities=13%  Similarity=0.125  Sum_probs=65.1

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEP   81 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~   81 (140)
                      |++|+..|. ++.+...++++..++.           ..++.+..-|+.+.      ...||+|++..++..-  +....
T Consensus       113 ~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~------~~~fD~v~~~~~l~~~~~~~~~~  175 (318)
T 2fk8_A          113 DVNVIGLTLSKNQHARCEQVLASIDT-----------NRSRQVLLQGWEDF------AEPVDRIVSIEAFEHFGHENYDD  175 (318)
T ss_dssp             CCEEEEEESCHHHHHHHHHHHHTSCC-----------SSCEEEEESCGGGC------CCCCSEEEEESCGGGTCGGGHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECChHHC------CCCcCEEEEeChHHhcCHHHHHH
Confidence            889999998 8899999998876643           24566666665332      2689999999998764  57788


Q ss_pred             HHHHHHHhcCCCeEEEEEEEecC
Q 032462           82 LLQTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        82 L~~tl~~ll~~~~~~~~~~~~R~  104 (140)
                      +++.+.++++|+|.+++....+.
T Consensus       176 ~l~~~~~~LkpgG~l~~~~~~~~  198 (318)
T 2fk8_A          176 FFKRCFNIMPADGRMTVQSSVSY  198 (318)
T ss_dssp             HHHHHHHHSCTTCEEEEEEEECC
T ss_pred             HHHHHHHhcCCCcEEEEEEeccC
Confidence            99999999999999988776553

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=97.90  E-value=2.4e-05  Score=57.80  Aligned_cols=104  Identities=9%  Similarity=-0.038  Sum_probs=70.9

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      +++|+..|. +..+..+++|++.++.            .++++..-++.+....+....+||+|++.-+    ...+.++
T Consensus       104 ~~~v~~vD~s~~~~~~a~~~~~~~~l------------~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~----~~~~~ll  167 (249)
T 3g89_A          104 ELELVLVDATRKKVAFVERAIEVLGL------------KGARALWGRAEVLAREAGHREAYARAVARAV----APLCVLS  167 (249)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHHTC------------SSEEEEECCHHHHTTSTTTTTCEEEEEEESS----CCHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHhCC------------CceEEEECcHHHhhcccccCCCceEEEECCc----CCHHHHH
Confidence            569999997 8899999999998864            2467766665432211112468999998543    2457788


Q ss_pred             HHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEEee
Q 032462           84 QTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV  124 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~v  124 (140)
                      ..+..+++|+|.+++.......+....+.+.++ .||.+.++
T Consensus       168 ~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~  209 (249)
T 3g89_A          168 ELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEV  209 (249)
T ss_dssp             HHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEE
T ss_pred             HHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEE
Confidence            888889999999876554433333445556663 58876654

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.89  E-value=2.9e-05  Score=54.37  Aligned_cols=89  Identities=11%  Similarity=0.112  Sum_probs=66.7

Q ss_pred             cCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cc
Q 032462            3 LLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HL   78 (140)
Q Consensus         3 ~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~   78 (140)
                      ..|+ +|+..|. ++.+..+++|++.|..            .++++..-|+.+... .....+||+|++. ..|..  +.
T Consensus        64 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~~-~~~~~~fD~i~~~-~p~~~~~~~  129 (189)
T 3p9n_A           64 SRGAASVLFVESDQRSAAVIARNIEALGL------------SGATLRRGAVAAVVA-AGTTSPVDLVLAD-PPYNVDSAD  129 (189)
T ss_dssp             HTTCSEEEEEECCHHHHHHHHHHHHHHTC------------SCEEEEESCHHHHHH-HCCSSCCSEEEEC-CCTTSCHHH
T ss_pred             HCCCCeEEEEECCHHHHHHHHHHHHHcCC------------CceEEEEccHHHHHh-hccCCCccEEEEC-CCCCcchhh
Confidence            4566 8999998 8899999999998863            456777766654321 0114689999874 44665  57


Q ss_pred             hHHHHHHHHH--hcCCCeEEEEEEEecCh
Q 032462           79 LEPLLQTIFA--LSGPKTTILLGYEIRST  105 (140)
Q Consensus        79 ~~~L~~tl~~--ll~~~~~~~~~~~~R~~  105 (140)
                      ...++..+..  +++|+|.+++.+..+..
T Consensus       130 ~~~~l~~~~~~~~L~pgG~l~~~~~~~~~  158 (189)
T 3p9n_A          130 VDAILAALGTNGWTREGTVAVVERATTCA  158 (189)
T ss_dssp             HHHHHHHHHHSSSCCTTCEEEEEEETTSC
T ss_pred             HHHHHHHHHhcCccCCCeEEEEEecCCCC
Confidence            7888888888  99999999998876653

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=97.89  E-value=0.00014  Score=56.74  Aligned_cols=94  Identities=13%  Similarity=0.086  Sum_probs=70.7

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhccc-ccCCCCCCCCCceEEEEeecCCCccc---cccCCCccEEEEeecccCccch
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRI-SQMNPGSDLLGSIQAVELDWGNEDHI---KAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~-~~~~~~~~~~~~v~~~~LdWg~~~~~---~~~~~~~D~IlasDviY~~~~~   79 (140)
                      +++|+.+|. +..+...++|++.+.... +.     ....++++..-|+.+....   +.....||+|++..++..-...
T Consensus       108 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~-----~~~~~v~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~d~  182 (383)
T 4fsd_A          108 HGKVIGVDMLDNQLEVARKYVEYHAEKFFGS-----PSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNK  182 (383)
T ss_dssp             TCEEEEEECCHHHHHHHHHTHHHHHHHHHSS-----TTCCCEEEEESCTTCGGGCBSCCCCTTCEEEEEEESCGGGCSCH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHhhhhcccc-----cCCCceEEEEccHHHhhhcccCCCCCCCEEEEEEccchhcCCCH
Confidence            569999998 889999999998874321 00     0125788888888764221   2235689999999999887778


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEec
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      ..+++.+.++++|+|.+++.....
T Consensus       183 ~~~l~~~~r~LkpgG~l~i~~~~~  206 (383)
T 4fsd_A          183 LALFKEIHRVLRDGGELYFSDVYA  206 (383)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCCEEEEEEecc
Confidence            899999999999999998875443

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.89  E-value=1.7e-05  Score=66.85  Aligned_cols=119  Identities=18%  Similarity=0.141  Sum_probs=83.0

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC----
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA----   75 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~----   75 (140)
                      |+.|+ +|+..|. +..+..+++|++.|+..          ..++++..-|..+.  .+....+||+|+. |.-|.    
T Consensus       558 a~~ga~~V~aVD~s~~al~~a~~N~~~ngl~----------~~~v~~i~~D~~~~--l~~~~~~fD~Ii~-DPP~f~~~~  624 (703)
T 3v97_A          558 GLGGARSTTTVDMSRTYLEWAERNLRLNGLT----------GRAHRLIQADCLAW--LREANEQFDLIFI-DPPTFSNSK  624 (703)
T ss_dssp             HHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----------STTEEEEESCHHHH--HHHCCCCEEEEEE-CCCSBC---
T ss_pred             HHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----------ccceEEEecCHHHH--HHhcCCCccEEEE-CCccccCCc
Confidence            45687 6999998 88999999999999752          23566666554432  1123468999985 33221    


Q ss_pred             --------ccchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEeecCCCCCcccCC
Q 032462           76 --------EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGN  135 (140)
Q Consensus        76 --------~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~v~~~~l~~~~~~  135 (140)
                              ......++..+.++++|+|.++++...|........++  +.+|.++.|....++++|..
T Consensus       625 ~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~--~~g~~~~~i~~~~lp~df~~  690 (703)
T 3v97_A          625 RMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLA--KLGLKAQEITQKTLSQDFAR  690 (703)
T ss_dssp             ----CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHH--HTTEEEEECTTTTCCGGGTT
T ss_pred             cchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHH--HcCCceeeeeeccCCCCCCC
Confidence                    12456678788888999999999888765432222222  35889999999999999964

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=97.88  E-value=7.9e-05  Score=53.57  Aligned_cols=81  Identities=12%  Similarity=-0.013  Sum_probs=59.3

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEee-cccCc---
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTD-VVYAE---   76 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasD-viY~~---   76 (140)
                      +..|++|+..|. +.++...++++..+..             ++.+...+..+.+   . ..+||+|+++. ++..-   
T Consensus        56 ~~~~~~~~~~D~s~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~~---~-~~~fD~v~~~~~~l~~~~~~  118 (246)
T 1y8c_A           56 CPKFKNTWAVDLSQEMLSEAENKFRSQGL-------------KPRLACQDISNLN---I-NRKFDLITCCLDSTNYIIDS  118 (246)
T ss_dssp             GGGSSEEEEECSCHHHHHHHHHHHHHTTC-------------CCEEECCCGGGCC---C-SCCEEEEEECTTGGGGCCSH
T ss_pred             HHCCCcEEEEECCHHHHHHHHHHHhhcCC-------------CeEEEecccccCC---c-cCCceEEEEcCccccccCCH
Confidence            456889999998 8899999998876531             3455554544322   1 26899999996 87654   


Q ss_pred             cchHHHHHHHHHhcCCCeEEEEE
Q 032462           77 HLLEPLLQTIFALSGPKTTILLG   99 (140)
Q Consensus        77 ~~~~~L~~tl~~ll~~~~~~~~~   99 (140)
                      +....+++.+.++++|+|.+++.
T Consensus       119 ~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A          119 DDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             HHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEE
Confidence            56677888888889999988873

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=97.87  E-value=4.8e-05  Score=52.04  Aligned_cols=99  Identities=9%  Similarity=0.077  Sum_probs=70.7

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      +..|.+|+..|. +..+..++++    .             +++.+..-+      .+.....||+|+++++++.-....
T Consensus        36 ~~~~~~v~~vD~s~~~~~~a~~~----~-------------~~v~~~~~d------~~~~~~~~D~v~~~~~l~~~~~~~   92 (170)
T 3i9f_A           36 LEFATKLYCIDINVIALKEVKEK----F-------------DSVITLSDP------KEIPDNSVDFILFANSFHDMDDKQ   92 (170)
T ss_dssp             HTTEEEEEEECSCHHHHHHHHHH----C-------------TTSEEESSG------GGSCTTCEEEEEEESCSTTCSCHH
T ss_pred             HhhcCeEEEEeCCHHHHHHHHHh----C-------------CCcEEEeCC------CCCCCCceEEEEEccchhcccCHH
Confidence            344569999998 7788888887    1             234444444      112256899999999999887888


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEecChh----------HHHHHHHHHHhcCeEEee
Q 032462           81 PLLQTIFALSGPKTTILLGYEIRSTS----------VHEQMLQMWKSNFNVKLV  124 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~R~~~----------~~~~F~~~~~~~f~v~~v  124 (140)
                      .+++.+.++++|+|.+++....+...          +.+.+.+.++ ||++.++
T Consensus        93 ~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-Gf~~~~~  145 (170)
T 3i9f_A           93 HVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS-NFVVEKR  145 (170)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT-TEEEEEE
T ss_pred             HHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh-CcEEEEc
Confidence            99999999999999998876544310          1345555567 9987654

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=97.86  E-value=5.7e-05  Score=53.82  Aligned_cols=85  Identities=13%  Similarity=0.182  Sum_probs=64.8

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeec--ccCccc
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV--VYAEHL   78 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDv--iY~~~~   78 (140)
                      +..|.+|+..|. +.++..+++|...+.             .++.+...|..+.+   ....+||+|++.++  .+....
T Consensus        57 ~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------------~~~~~~~~d~~~~~---~~~~~~D~v~~~~~~~~~~~~~  120 (227)
T 1ve3_A           57 EDYGFEVVGVDISEDMIRKAREYAKSRE-------------SNVEFIVGDARKLS---FEDKTFDYVIFIDSIVHFEPLE  120 (227)
T ss_dssp             HHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCCEEEECCTTSCC---SCTTCEEEEEEESCGGGCCHHH
T ss_pred             HHcCCEEEEEECCHHHHHHHHHHHHhcC-------------CCceEEECchhcCC---CCCCcEEEEEEcCchHhCCHHH
Confidence            456779999998 889999999988764             24566666665432   12468999999999  665556


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEe
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~  102 (140)
                      ...+++.+.++++|+|.+++....
T Consensus       121 ~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          121 LNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHcCCCcEEEEEecC
Confidence            678888899999999999887654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=97.85  E-value=9e-05  Score=55.43  Aligned_cols=84  Identities=14%  Similarity=0.130  Sum_probs=59.8

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc--ccccCCCccEEEEeeccc--C
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH--IKAVAPPFDYIIGTDVVY--A   75 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~--~~~~~~~~D~IlasDviY--~   75 (140)
                      ||..|++|+..|. +.++..+++|+..+.                  ...+|.+...  ......+||+|+++.++.  .
T Consensus        63 La~~g~~V~gvD~S~~ml~~Ar~~~~~~~------------------v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~  124 (261)
T 3iv6_A           63 ALERGASVTVFDFSQRMCDDLAEALADRC------------------VTIDLLDITAEIPKELAGHFDFVLNDRLINRFT  124 (261)
T ss_dssp             HHHTTCEEEEEESCHHHHHHHHHHTSSSC------------------CEEEECCTTSCCCGGGTTCCSEEEEESCGGGSC
T ss_pred             HHhcCCEEEEEECCHHHHHHHHHHHHhcc------------------ceeeeeecccccccccCCCccEEEEhhhhHhCC
Confidence            4667999999998 789999998875441                  1233433221  112246899999998874  3


Q ss_pred             ccchHHHHHHHHHhcCCCeEEEEEEEec
Q 032462           76 EHLLEPLLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        76 ~~~~~~L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      .+.....++.+.+++ |+|.+++++..-
T Consensus       125 ~~~~~~~l~~l~~lL-PGG~l~lS~~~g  151 (261)
T 3iv6_A          125 TEEARRACLGMLSLV-GSGTVRASVKLG  151 (261)
T ss_dssp             HHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred             HHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence            455667888888888 999999998764

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=97.83  E-value=0.00012  Score=50.79  Aligned_cols=108  Identities=15%  Similarity=0.027  Sum_probs=65.2

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc----
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----   76 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~----   76 (140)
                      |+.|++|+..|. ++.+...++|++.++.            .++++..-+..+...  ....+||+|+.+ .-|.+    
T Consensus        41 a~~~~~v~~vD~s~~~l~~a~~~~~~~~~------------~~v~~~~~~~~~l~~--~~~~~fD~v~~~-~~~~~~~~~  105 (185)
T 3mti_A           41 AGLSKKVYAFDVQEQALGKTSQRLSDLGI------------ENTELILDGHENLDH--YVREPIRAAIFN-LGYLPSADK  105 (185)
T ss_dssp             HTTSSEEEEEESCHHHHHHHHHHHHHHTC------------CCEEEEESCGGGGGG--TCCSCEEEEEEE-EC-------
T ss_pred             HHhCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEeCcHHHHHh--hccCCcCEEEEe-CCCCCCcch
Confidence            556889999998 8899999999998763            345555422221111  125679999654 33432    


Q ss_pred             ------cchHHHHHHHHHhcCCCeEEEEEEEecCh------hHHHHHHHHH-HhcCeEEee
Q 032462           77 ------HLLEPLLQTIFALSGPKTTILLGYEIRST------SVHEQMLQMW-KSNFNVKLV  124 (140)
Q Consensus        77 ------~~~~~L~~tl~~ll~~~~~~~~~~~~R~~------~~~~~F~~~~-~~~f~v~~v  124 (140)
                            +.....++.+.++++|+|.+++..-....      .....|++.+ .++|.+...
T Consensus       106 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  166 (185)
T 3mti_A          106 SVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLY  166 (185)
T ss_dssp             ----CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEEE
T ss_pred             hcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEe
Confidence                  23345667777888999998765432211      2244566665 456776554

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=97.82  E-value=4.3e-05  Score=60.03  Aligned_cols=81  Identities=14%  Similarity=0.136  Sum_probs=62.6

Q ss_pred             ccCCC-EEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEE---eecccCcc
Q 032462            2 ALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIG---TDVVYAEH   77 (140)
Q Consensus         2 A~lGa-~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ila---sDviY~~~   77 (140)
                      |+.|| +|++-|..+++...++|++.|+.           ...|++..=+-.+.+    ...++|+||.   ..++..+.
T Consensus       102 a~aGA~~V~ave~s~~~~~a~~~~~~n~~-----------~~~i~~i~~~~~~~~----lpe~~DvivsE~~~~~l~~e~  166 (376)
T 4hc4_A          102 AQAGARRVYAVEASAIWQQAREVVRFNGL-----------EDRVHVLPGPVETVE----LPEQVDAIVSEWMGYGLLHES  166 (376)
T ss_dssp             HHTTCSEEEEEECSTTHHHHHHHHHHTTC-----------TTTEEEEESCTTTCC----CSSCEEEEECCCCBTTBTTTC
T ss_pred             HHhCCCEEEEEeChHHHHHHHHHHHHcCC-----------CceEEEEeeeeeeec----CCccccEEEeecccccccccc
Confidence            56898 89999997788999999999985           356676665443322    2468999986   56677788


Q ss_pred             chHHHHHHHHHhcCCCeEEE
Q 032462           78 LLEPLLQTIFALSGPKTTIL   97 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~   97 (140)
                      ..+.++...+++|+|+|.++
T Consensus       167 ~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          167 MLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             SHHHHHHHHHHHEEEEEEEE
T ss_pred             hhhhHHHHHHhhCCCCceEC
Confidence            99999999999998776543

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=97.82  E-value=8.8e-05  Score=53.41  Aligned_cols=82  Identities=10%  Similarity=-0.019  Sum_probs=64.4

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      +..|++|+..|. +..+..++++.    .           ..++.+...+..+.+   .....||+|++..+++.-....
T Consensus        72 ~~~~~~v~~vD~s~~~~~~a~~~~----~-----------~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~  133 (242)
T 3l8d_A           72 SRTGYKAVGVDISEVMIQKGKERG----E-----------GPDLSFIKGDLSSLP---FENEQFEAIMAINSLEWTEEPL  133 (242)
T ss_dssp             HHTTCEEEEEESCHHHHHHHHTTT----C-----------BTTEEEEECBTTBCS---SCTTCEEEEEEESCTTSSSCHH
T ss_pred             HHcCCeEEEEECCHHHHHHHHhhc----c-----------cCCceEEEcchhcCC---CCCCCccEEEEcChHhhccCHH
Confidence            456889999998 77888877663    1           245677777766432   2257899999999999888888


Q ss_pred             HHHHHHHHhcCCCeEEEEEEE
Q 032462           81 PLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      .+++.+.++++|+|.+++...
T Consensus       134 ~~l~~~~~~L~pgG~l~i~~~  154 (242)
T 3l8d_A          134 RALNEIKRVLKSDGYACIAIL  154 (242)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHhCCCeEEEEEEc
Confidence            899999999999999988874

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=97.79  E-value=0.00033  Score=49.66  Aligned_cols=82  Identities=17%  Similarity=0.085  Sum_probs=59.2

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      +..|++|+..|. +..+...++++.                .++.+..-+..+.+   .. ..||+|++..++..-....
T Consensus        64 ~~~~~~v~~vD~s~~~~~~a~~~~~----------------~~~~~~~~d~~~~~---~~-~~fD~v~~~~~l~~~~~~~  123 (220)
T 3hnr_A           64 LLAGRTVYGIEPSREMRMIAKEKLP----------------KEFSITEGDFLSFE---VP-TSIDTIVSTYAFHHLTDDE  123 (220)
T ss_dssp             HHTTCEEEEECSCHHHHHHHHHHSC----------------TTCCEESCCSSSCC---CC-SCCSEEEEESCGGGSCHHH
T ss_pred             HhCCCeEEEEeCCHHHHHHHHHhCC----------------CceEEEeCChhhcC---CC-CCeEEEEECcchhcCChHH
Confidence            445889999998 778888887754                12334444444322   12 7899999999998765544


Q ss_pred             H--HHHHHHHhcCCCeEEEEEEEec
Q 032462           81 P--LLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        81 ~--L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      .  +++.+.++++|+|.+++.....
T Consensus       124 ~~~~l~~~~~~LkpgG~l~i~~~~~  148 (220)
T 3hnr_A          124 KNVAIAKYSQLLNKGGKIVFADTIF  148 (220)
T ss_dssp             HHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred             HHHHHHHHHHhcCCCCEEEEEeccc
Confidence            4  8899999999999999886543

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=97.78  E-value=7.2e-05  Score=54.49  Aligned_cols=82  Identities=20%  Similarity=0.191  Sum_probs=63.7

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEP   81 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~   81 (140)
                      |++|+..|. +..+...++++..+              .++.+...|+.+.+   ....+||+|++.++++.-  .....
T Consensus        78 ~~~v~~vD~s~~~~~~a~~~~~~~--------------~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~~  140 (266)
T 3ujc_A           78 GAHTHGIDICSNIVNMANERVSGN--------------NKIIFEANDILTKE---FPENNFDLIYSRDAILALSLENKNK  140 (266)
T ss_dssp             CCEEEEEESCHHHHHHHHHTCCSC--------------TTEEEEECCTTTCC---CCTTCEEEEEEESCGGGSCHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHhhcC--------------CCeEEEECccccCC---CCCCcEEEEeHHHHHHhcChHHHHH
Confidence            789999998 77888777655332              45677777776542   225789999999999987  77888


Q ss_pred             HHHHHHHhcCCCeEEEEEEEec
Q 032462           82 LLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        82 L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      +++.+.++++|+|.+++....+
T Consensus       141 ~l~~~~~~L~pgG~l~~~~~~~  162 (266)
T 3ujc_A          141 LFQKCYKWLKPTGTLLITDYCA  162 (266)
T ss_dssp             HHHHHHHHEEEEEEEEEEEEEE
T ss_pred             HHHHHHHHcCCCCEEEEEEecc
Confidence            9999999999999998876543

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=97.77  E-value=0.00039  Score=53.90  Aligned_cols=83  Identities=12%  Similarity=0.022  Sum_probs=64.9

Q ss_pred             CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc--chHHH
Q 032462            5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--LLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~--~~~~L   82 (140)
                      +.+++..|.+.+++..++++.....           ..++++...|..++  .+   ..||+|+++.++.+-.  ....+
T Consensus       226 ~~~~~~~D~~~~~~~a~~~~~~~~l-----------~~~v~~~~~d~~~~--~p---~~~D~v~~~~vlh~~~d~~~~~~  289 (369)
T 3gwz_A          226 GLRGTLLERPPVAEEARELLTGRGL-----------ADRCEILPGDFFET--IP---DGADVYLIKHVLHDWDDDDVVRI  289 (369)
T ss_dssp             TCEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTTC--CC---SSCSEEEEESCGGGSCHHHHHHH
T ss_pred             CCeEEEEcCHHHHHHHHHhhhhcCc-----------CCceEEeccCCCCC--CC---CCceEEEhhhhhccCCHHHHHHH
Confidence            5689999998899999999877543           36789999888732  22   2799999999996543  33478


Q ss_pred             HHHHHHhcCCCeEEEEEEEec
Q 032462           83 LQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      ++.+.+.++|+|.+++.....
T Consensus       290 L~~~~~~L~pgG~l~i~e~~~  310 (369)
T 3gwz_A          290 LRRIATAMKPDSRLLVIDNLI  310 (369)
T ss_dssp             HHHHHTTCCTTCEEEEEEEBC
T ss_pred             HHHHHHHcCCCCEEEEEEecc
Confidence            888899999999998876544

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=97.76  E-value=0.00022  Score=51.81  Aligned_cols=86  Identities=14%  Similarity=0.134  Sum_probs=66.6

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      +..|++|+..|. +..+...++|+ .+            ...++.+...++.+.+   .....||+|+++.+++.-....
T Consensus        58 ~~~~~~v~~vD~s~~~~~~a~~~~-~~------------~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~  121 (263)
T 2yqz_A           58 IARGYRYIALDADAAMLEVFRQKI-AG------------VDRKVQVVQADARAIP---LPDESVHGVIVVHLWHLVPDWP  121 (263)
T ss_dssp             HTTTCEEEEEESCHHHHHHHHHHT-TT------------SCTTEEEEESCTTSCC---SCTTCEEEEEEESCGGGCTTHH
T ss_pred             HHCCCEEEEEECCHHHHHHHHHHh-hc------------cCCceEEEEcccccCC---CCCCCeeEEEECCchhhcCCHH
Confidence            456889999998 78899998887 21            1256777777775432   2246899999999998876778


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEec
Q 032462           81 PLLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      .+++.+.++++|+|.+++....+
T Consensus       122 ~~l~~~~~~L~pgG~l~~~~~~~  144 (263)
T 2yqz_A          122 KVLAEAIRVLKPGGALLEGWDQA  144 (263)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHCCCCcEEEEEecCC
Confidence            89999999999999998875544

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=97.76  E-value=0.00013  Score=52.41  Aligned_cols=81  Identities=14%  Similarity=0.075  Sum_probs=60.5

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      +..|+ +|+..|. +..+...+++...               .++.+...+..+.+   .....||+|+++.++..-...
T Consensus        62 ~~~~~~~v~~vD~s~~~~~~a~~~~~~---------------~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~  123 (243)
T 3bkw_A           62 HEHGASYVLGLDLSEKMLARARAAGPD---------------TGITYERADLDKLH---LPQDSFDLAYSSLALHYVEDV  123 (243)
T ss_dssp             HHTTCSEEEEEESCHHHHHHHHHTSCS---------------SSEEEEECCGGGCC---CCTTCEEEEEEESCGGGCSCH
T ss_pred             HHCCCCeEEEEcCCHHHHHHHHHhccc---------------CCceEEEcChhhcc---CCCCCceEEEEeccccccchH
Confidence            44577 9999998 7788887765422               24555555554322   224689999999999877778


Q ss_pred             HHHHHHHHHhcCCCeEEEEEE
Q 032462           80 EPLLQTIFALSGPKTTILLGY  100 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~  100 (140)
                      ..+++.+.++++|+|.+++..
T Consensus       124 ~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          124 ARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHhcCcCcEEEEEe
Confidence            889999999999999998865

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=97.75  E-value=0.00011  Score=51.73  Aligned_cols=85  Identities=7%  Similarity=0.003  Sum_probs=63.5

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cc
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HL   78 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~   78 (140)
                      +..|++|+..|. +..+..+++++..+..             ++.+...|..+.+   .....||+|+++++++.-  +.
T Consensus        43 ~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~  106 (209)
T 2p8j_A           43 VEDGYKTYGIEISDLQLKKAENFSRENNF-------------KLNISKGDIRKLP---FKDESMSFVYSYGTIFHMRKND  106 (209)
T ss_dssp             HHTTCEEEEEECCHHHHHHHHHHHHHHTC-------------CCCEEECCTTSCC---SCTTCEEEEEECSCGGGSCHHH
T ss_pred             HhCCCEEEEEECCHHHHHHHHHHHHhcCC-------------ceEEEECchhhCC---CCCCceeEEEEcChHHhCCHHH
Confidence            346789999998 7899999999877542             3455555554422   224689999999988765  56


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEe
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~  102 (140)
                      ...+++.+.++++|+|.+++....
T Consensus       107 ~~~~l~~~~~~LkpgG~l~~~~~~  130 (209)
T 2p8j_A          107 VKEAIDEIKRVLKPGGLACINFLT  130 (209)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCcEEEEEEec
Confidence            778888888999999999887654

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=97.74  E-value=0.0002  Score=51.40  Aligned_cols=83  Identities=12%  Similarity=0.071  Sum_probs=61.7

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      |+..|.+|+..|. +..+...+++...                ++.+..-+..+.    .....||+|+++.++..-...
T Consensus        60 l~~~~~~v~gvD~s~~~~~~a~~~~~~----------------~v~~~~~d~~~~----~~~~~fD~v~~~~~l~~~~~~  119 (250)
T 2p7i_A           60 LQEHFNDITCVEASEEAISHAQGRLKD----------------GITYIHSRFEDA----QLPRRYDNIVLTHVLEHIDDP  119 (250)
T ss_dssp             HTTTCSCEEEEESCHHHHHHHHHHSCS----------------CEEEEESCGGGC----CCSSCEEEEEEESCGGGCSSH
T ss_pred             HHHhCCcEEEEeCCHHHHHHHHHhhhC----------------CeEEEEccHHHc----CcCCcccEEEEhhHHHhhcCH
Confidence            3567889999998 7788877766421                344444444332    124679999999999887667


Q ss_pred             HHHHHHHH-HhcCCCeEEEEEEEec
Q 032462           80 EPLLQTIF-ALSGPKTTILLGYEIR  103 (140)
Q Consensus        80 ~~L~~tl~-~ll~~~~~~~~~~~~R  103 (140)
                      ..+++.+. ++++|+|.+++....+
T Consensus       120 ~~~l~~~~~~~LkpgG~l~i~~~~~  144 (250)
T 2p7i_A          120 VALLKRINDDWLAEGGRLFLVCPNA  144 (250)
T ss_dssp             HHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             HHHHHHHHHHhcCCCCEEEEEcCCh
Confidence            88999999 9999999999887654

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=97.74  E-value=0.00015  Score=53.65  Aligned_cols=88  Identities=10%  Similarity=-0.062  Sum_probs=65.3

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC----
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA----   75 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~----   75 (140)
                      +..|. +|+..|. +..+..+++|+..+..           ..++.+...|..+.+. + ....||+|++..++..    
T Consensus        83 ~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~-~-~~~~fD~v~~~~~l~~~~~~  149 (298)
T 1ri5_A           83 ERAGIGEYYGVDIAEVSINDARVRARNMKR-----------RFKVFFRAQDSYGRHM-D-LGKEFDVISSQFSFHYAFST  149 (298)
T ss_dssp             HHHTCSEEEEEESCHHHHHHHHHHHHTSCC-----------SSEEEEEESCTTTSCC-C-CSSCEEEEEEESCGGGGGSS
T ss_pred             HHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CccEEEEECCcccccc-C-CCCCcCEEEECchhhhhcCC
Confidence            34565 9999998 7899999998876542           2467777777765421 1 2468999999999854    


Q ss_pred             ccchHHHHHHHHHhcCCCeEEEEEEEe
Q 032462           76 EHLLEPLLQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        76 ~~~~~~L~~tl~~ll~~~~~~~~~~~~  102 (140)
                      ......+++.+.++++|+|.+++....
T Consensus       150 ~~~~~~~l~~~~~~LkpgG~l~~~~~~  176 (298)
T 1ri5_A          150 SESLDIAQRNIARHLRPGGYFIMTVPS  176 (298)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            345677888888899999999887654

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=97.73  E-value=0.00034  Score=52.93  Aligned_cols=84  Identities=14%  Similarity=0.100  Sum_probs=65.8

Q ss_pred             CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHHH
Q 032462            5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~L   82 (140)
                      +.+|+.+|.+.+++..++|+..+..           ..++++...|..+.+ .   ...||+|+++.+++.-  .....+
T Consensus       189 ~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~-~---~~~~D~v~~~~~l~~~~~~~~~~~  253 (335)
T 2r3s_A          189 NAEIFGVDWASVLEVAKENARIQGV-----------ASRYHTIAGSAFEVD-Y---GNDYDLVLLPNFLHHFDVATCEQL  253 (335)
T ss_dssp             TCEEEEEECHHHHHHHHHHHHHHTC-----------GGGEEEEESCTTTSC-C---CSCEEEEEEESCGGGSCHHHHHHH
T ss_pred             CCeEEEEecHHHHHHHHHHHHhcCC-----------CcceEEEecccccCC-C---CCCCcEEEEcchhccCCHHHHHHH
Confidence            5699999998889999999987653           246888888887642 2   2359999999999874  455788


Q ss_pred             HHHHHHhcCCCeEEEEEEEec
Q 032462           83 LQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      ++.+.+.++|+|.+++.....
T Consensus       254 l~~~~~~L~pgG~l~i~e~~~  274 (335)
T 2r3s_A          254 LRKIKTALAVEGKVIVFDFIP  274 (335)
T ss_dssp             HHHHHHHEEEEEEEEEEECCC
T ss_pred             HHHHHHhCCCCcEEEEEeecC
Confidence            888899999999888875543

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=97.72  E-value=0.00022  Score=55.21  Aligned_cols=84  Identities=12%  Similarity=0.155  Sum_probs=65.1

Q ss_pred             CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCc-cccccCCCccEEEEeecccC--ccchHH
Q 032462            5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAVAPPFDYIIGTDVVYA--EHLLEP   81 (140)
Q Consensus         5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~-~~~~~~~~~D~IlasDviY~--~~~~~~   81 (140)
                      +.+|+..|.+.+++..++|+..+..           ..++++...|..+.. +.   ...||+|+.+.++++  ++....
T Consensus       203 ~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~~~---p~~~D~v~~~~vlh~~~~~~~~~  268 (363)
T 3dp7_A          203 EVEVTIVDLPQQLEMMRKQTAGLSG-----------SERIHGHGANLLDRDVPF---PTGFDAVWMSQFLDCFSEEEVIS  268 (363)
T ss_dssp             TCEEEEEECHHHHHHHHHHHTTCTT-----------GGGEEEEECCCCSSSCCC---CCCCSEEEEESCSTTSCHHHHHH
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhcCc-----------ccceEEEEccccccCCCC---CCCcCEEEEechhhhCCHHHHHH
Confidence            5699999998899999998865542           257888888887652 22   258999999999974  345567


Q ss_pred             HHHHHHHhcCCCeEEEEEEEe
Q 032462           82 LLQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        82 L~~tl~~ll~~~~~~~~~~~~  102 (140)
                      +++.+.+.++|+|.+++.-..
T Consensus       269 ~l~~~~~~L~pgG~l~i~e~~  289 (363)
T 3dp7_A          269 ILTRVAQSIGKDSKVYIMETL  289 (363)
T ss_dssp             HHHHHHHHCCTTCEEEEEECC
T ss_pred             HHHHHHHhcCCCcEEEEEeec
Confidence            888899999999999886543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=97.72  E-value=1.8e-05  Score=54.69  Aligned_cols=89  Identities=10%  Similarity=0.204  Sum_probs=63.3

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      ++.|+ +|+..|. ++.+..+++|++.++.           ..++.+..-|+.+.  .+....+||+|++ |..|.....
T Consensus        50 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~--~~~~~~~fD~i~~-~~~~~~~~~  115 (177)
T 2esr_A           50 VSRGMSAAVLVEKNRKAQAIIQDNIIMTKA-----------ENRFTLLKMEAERA--IDCLTGRFDLVFL-DPPYAKETI  115 (177)
T ss_dssp             HHTTCCEEEEECCCHHHHHHHHHHHHTTTC-----------GGGEEEECSCHHHH--HHHBCSCEEEEEE-CCSSHHHHH
T ss_pred             HHcCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCceEEEECcHHHh--HHhhcCCCCEEEE-CCCCCcchH
Confidence            34564 9999998 8899999999998753           23566666665442  1223457999986 455655566


Q ss_pred             HHHHHHHH--HhcCCCeEEEEEEEecC
Q 032462           80 EPLLQTIF--ALSGPKTTILLGYEIRS  104 (140)
Q Consensus        80 ~~L~~tl~--~ll~~~~~~~~~~~~R~  104 (140)
                      +.++..+.  .+++|+|.+++....+.
T Consensus       116 ~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A          116 VATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             HHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             HHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            77777776  77889999998877654

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=97.70  E-value=0.0003  Score=51.49  Aligned_cols=78  Identities=13%  Similarity=0.027  Sum_probs=57.0

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEee-cccCc--
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTD-VVYAE--   76 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasD-viY~~--   76 (140)
                      |+..|++|+..|. +.++..++++..                 ++.+...|..+.+   . ..+||+|+++. ++..-  
T Consensus        68 l~~~~~~v~gvD~s~~~~~~a~~~~~-----------------~~~~~~~d~~~~~---~-~~~fD~v~~~~~~l~~~~~  126 (263)
T 3pfg_A           68 LADSFGTVEGLELSADMLAIARRRNP-----------------DAVLHHGDMRDFS---L-GRRFSAVTCMFSSIGHLAG  126 (263)
T ss_dssp             HTTTSSEEEEEESCHHHHHHHHHHCT-----------------TSEEEECCTTTCC---C-SCCEEEEEECTTGGGGSCH
T ss_pred             HHHcCCeEEEEECCHHHHHHHHhhCC-----------------CCEEEECChHHCC---c-cCCcCEEEEcCchhhhcCC
Confidence            3566889999998 788888887642                 3455555655432   1 57899999996 76553  


Q ss_pred             -cchHHHHHHHHHhcCCCeEEEEE
Q 032462           77 -HLLEPLLQTIFALSGPKTTILLG   99 (140)
Q Consensus        77 -~~~~~L~~tl~~ll~~~~~~~~~   99 (140)
                       +....+++.+.++++|+|.+++.
T Consensus       127 ~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          127 QAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEE
Confidence             45667788888899999998884

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=97.70  E-value=9.9e-05  Score=52.40  Aligned_cols=83  Identities=14%  Similarity=0.123  Sum_probs=63.4

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch-
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL-   79 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~-   79 (140)
                      +..|++|+..|. +..+..+++|+..+              +++.+...|..+..    ...+||+|+++.+++.-... 
T Consensus        70 ~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------~~~~~~~~d~~~~~----~~~~fD~v~~~~~l~~~~~~~  131 (216)
T 3ofk_A           70 APHCKRLTVIDVMPRAIGRACQRTKRW--------------SHISWAATDILQFS----TAELFDLIVVAEVLYYLEDMT  131 (216)
T ss_dssp             GGGEEEEEEEESCHHHHHHHHHHTTTC--------------SSEEEEECCTTTCC----CSCCEEEEEEESCGGGSSSHH
T ss_pred             HHcCCEEEEEECCHHHHHHHHHhcccC--------------CCeEEEEcchhhCC----CCCCccEEEEccHHHhCCCHH
Confidence            556779999998 78899888876432              36777777776654    25789999999999864433 


Q ss_pred             --HHHHHHHHHhcCCCeEEEEEEEe
Q 032462           80 --EPLLQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        80 --~~L~~tl~~ll~~~~~~~~~~~~  102 (140)
                        ..+++.+.++++|+|.++++...
T Consensus       132 ~~~~~l~~~~~~L~pgG~l~~~~~~  156 (216)
T 3ofk_A          132 QMRTAIDNMVKMLAPGGHLVFGSAR  156 (216)
T ss_dssp             HHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHcCCCCEEEEEecC
Confidence              56688888889999999987653

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=97.67  E-value=3e-05  Score=53.69  Aligned_cols=90  Identities=14%  Similarity=0.179  Sum_probs=64.9

Q ss_pred             cCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeecccCccch
Q 032462            3 LLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         3 ~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      +.|+ +|+..|. +..+..+++|+..|..           ..++++..-|+.+... .+....+||+|++. ..|.....
T Consensus        64 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~-~~~~~~~~  131 (187)
T 2fhp_A           64 SRGMDKSICIEKNFAALKVIKENIAITKE-----------PEKFEVRKMDANRALEQFYEEKLQFDLVLLD-PPYAKQEI  131 (187)
T ss_dssp             HTTCSEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEESCHHHHHHHHHHTTCCEEEEEEC-CCGGGCCH
T ss_pred             HcCCCEEEEEECCHHHHHHHHHHHHHhCC-----------CcceEEEECcHHHHHHHHHhcCCCCCEEEEC-CCCCchhH
Confidence            4564 9999998 8899999999998864           2467777777654211 11114689999964 44776677


Q ss_pred             HHHHHHH--HHhcCCCeEEEEEEEecC
Q 032462           80 EPLLQTI--FALSGPKTTILLGYEIRS  104 (140)
Q Consensus        80 ~~L~~tl--~~ll~~~~~~~~~~~~R~  104 (140)
                      +..+..+  ..+++|+|.+++....+.
T Consensus       132 ~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          132 VSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             HHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             HHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence            7888888  566889999988876554

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=97.66  E-value=0.00011  Score=54.61  Aligned_cols=97  Identities=13%  Similarity=0.055  Sum_probs=69.7

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHh-hcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N-~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L   82 (140)
                      |++|+..|. ++.+..+++|++.+ +.            .++.+..-|+.+.  .  ...+||+|++ |    ......+
T Consensus       135 ~~~v~~vD~s~~~~~~a~~~~~~~~g~------------~~v~~~~~d~~~~--~--~~~~fD~Vi~-~----~~~~~~~  193 (275)
T 1yb2_A          135 KGTLTVVERDEDNLKKAMDNLSEFYDI------------GNVRTSRSDIADF--I--SDQMYDAVIA-D----IPDPWNH  193 (275)
T ss_dssp             SSEEEEECSCHHHHHHHHHHHHTTSCC------------TTEEEECSCTTTC--C--CSCCEEEEEE-C----CSCGGGS
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhcCCC------------CcEEEEECchhcc--C--cCCCccEEEE-c----CcCHHHH
Confidence            579999998 88999999999887 52            3567777676652  1  1357999997 2    2334578


Q ss_pred             HHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEEee
Q 032462           83 LQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV  124 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~v  124 (140)
                      ++.+..+++|+|.+++......  ..+.+.+.++ .||...++
T Consensus       194 l~~~~~~LkpgG~l~i~~~~~~--~~~~~~~~l~~~Gf~~~~~  234 (275)
T 1yb2_A          194 VQKIASMMKPGSVATFYLPNFD--QSEKTVLSLSASGMHHLET  234 (275)
T ss_dssp             HHHHHHTEEEEEEEEEEESSHH--HHHHHHHHSGGGTEEEEEE
T ss_pred             HHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHHCCCeEEEE
Confidence            8888899999999988776442  2456667664 58875544

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=97.66  E-value=0.00018  Score=54.18  Aligned_cols=81  Identities=16%  Similarity=0.185  Sum_probs=63.1

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc---cchH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---HLLE   80 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~---~~~~   80 (140)
                      |++|+..|. +..+..+++|+..++.           ..++++..-|+.+.+   . ...||+|++..+++.-   ....
T Consensus       143 ~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~---~-~~~fD~v~~~~~~~~~~~~~~~~  207 (305)
T 3ocj_A          143 GVQLVGIDYDPEALDGATRLAAGHAL-----------AGQITLHRQDAWKLD---T-REGYDLLTSNGLNIYEPDDARVT  207 (305)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHTTSTT-----------GGGEEEEECCGGGCC---C-CSCEEEEECCSSGGGCCCHHHHH
T ss_pred             CCeEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECchhcCC---c-cCCeEEEEECChhhhcCCHHHHH
Confidence            569999998 8899999999977653           246788887776542   1 2789999999977753   3344


Q ss_pred             HHHHHHHHhcCCCeEEEEEE
Q 032462           81 PLLQTIFALSGPKTTILLGY  100 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~  100 (140)
                      .+++.+.++++|+|.++++.
T Consensus       208 ~~l~~~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          208 ELYRRFWQALKPGGALVTSF  227 (305)
T ss_dssp             HHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHHhcCCCeEEEEEe
Confidence            58899999999999999876

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=97.65  E-value=0.00022  Score=55.95  Aligned_cols=87  Identities=17%  Similarity=0.176  Sum_probs=64.1

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC-----
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-----   75 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~-----   75 (140)
                      ++.|++|+..|. +..+...++|+..|..             .+++..-|+.+..   ....+||+|++...+..     
T Consensus       252 a~~g~~V~gvDis~~al~~A~~n~~~~~~-------------~v~~~~~D~~~~~---~~~~~fD~Ii~npp~~~~~~~~  315 (381)
T 3dmg_A          252 ARMGAEVVGVEDDLASVLSLQKGLEANAL-------------KAQALHSDVDEAL---TEEARFDIIVTNPPFHVGGAVI  315 (381)
T ss_dssp             HHTTCEEEEEESBHHHHHHHHHHHHHTTC-------------CCEEEECSTTTTS---CTTCCEEEEEECCCCCTTCSSC
T ss_pred             HHcCCEEEEEECCHHHHHHHHHHHHHcCC-------------CeEEEEcchhhcc---ccCCCeEEEEECCchhhccccc
Confidence            456889999998 7899999999998864             2455555554432   12468999997666554     


Q ss_pred             ccchHHHHHHHHHhcCCCeEEEEEEEecC
Q 032462           76 EHLLEPLLQTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        76 ~~~~~~L~~tl~~ll~~~~~~~~~~~~R~  104 (140)
                      .+....++..+.+.++|+|.+++......
T Consensus       316 ~~~~~~~l~~~~~~LkpGG~l~iv~n~~l  344 (381)
T 3dmg_A          316 LDVAQAFVNVAAARLRPGGVFFLVSNPFL  344 (381)
T ss_dssp             CHHHHHHHHHHHHHEEEEEEEEEEECTTS
T ss_pred             HHHHHHHHHHHHHhcCcCcEEEEEEcCCC
Confidence            34566788888899999999998765443

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=97.64  E-value=0.00075  Score=51.27  Aligned_cols=82  Identities=11%  Similarity=-0.044  Sum_probs=64.1

Q ss_pred             CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHHH
Q 032462            5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~L   82 (140)
                      +.+++..|.+.+++..++++.....           ..++++...|..++  .+   .+||+|+++.++++-  +....+
T Consensus       193 ~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~p---~~~D~v~~~~vlh~~~~~~~~~~  256 (332)
T 3i53_A          193 DLSGTVLDLQGPASAAHRRFLDTGL-----------SGRAQVVVGSFFDP--LP---AGAGGYVLSAVLHDWDDLSAVAI  256 (332)
T ss_dssp             TCEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC--CC---CSCSEEEEESCGGGSCHHHHHHH
T ss_pred             CCeEEEecCHHHHHHHHHhhhhcCc-----------CcCeEEecCCCCCC--CC---CCCcEEEEehhhccCCHHHHHHH
Confidence            4589999998899999999876543           36788888888732  22   289999999999653  336788


Q ss_pred             HHHHHHhcCCCeEEEEEEEe
Q 032462           83 LQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~  102 (140)
                      ++.+.+.++|+|.+++....
T Consensus       257 l~~~~~~L~pgG~l~i~e~~  276 (332)
T 3i53_A          257 LRRCAEAAGSGGVVLVIEAV  276 (332)
T ss_dssp             HHHHHHHHTTTCEEEEEECC
T ss_pred             HHHHHHhcCCCCEEEEEeec
Confidence            89999999999999886543

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.62  E-value=0.00022  Score=52.90  Aligned_cols=98  Identities=15%  Similarity=0.253  Sum_probs=67.3

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe-------------
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT-------------   70 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas-------------   70 (140)
                      +++|+.+|. +..+..+++|++.++.            .++.+..-||.+..  +  ..+||+|++.             
T Consensus       133 ~~~v~~vD~s~~~l~~a~~n~~~~~~------------~~v~~~~~d~~~~~--~--~~~fD~Iv~npPy~~~~~~~l~~  196 (276)
T 2b3t_A          133 DCEIIAVDRMPDAVSLAQRNAQHLAI------------KNIHILQSDWFSAL--A--GQQFAMIVSNPPYIDEQDPHLQQ  196 (276)
T ss_dssp             TSEEEEECSSHHHHHHHHHHHHHHTC------------CSEEEECCSTTGGG--T--TCCEEEEEECCCCBCTTCHHHHS
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCC------------CceEEEEcchhhhc--c--cCCccEEEECCCCCCccccccCh
Confidence            569999998 8899999999998863            25778777886542  1  4589999985             


Q ss_pred             ecc-cCc-----------cchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeE
Q 032462           71 DVV-YAE-----------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNV  121 (140)
Q Consensus        71 Dvi-Y~~-----------~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v  121 (140)
                      +++ |.+           .....++..+..+++|+|.+++.......+   .+.+.+ +.||..
T Consensus       197 ~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~~l~~~Gf~~  257 (276)
T 2b3t_A          197 GDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGE---AVRQAFILAGYHD  257 (276)
T ss_dssp             SGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHH---HHHHHHHHTTCTT
T ss_pred             hhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHH---HHHHHHHHCCCcE
Confidence            222 222           234567777777889999998876544433   333444 357863

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=97.62  E-value=0.00033  Score=50.74  Aligned_cols=106  Identities=8%  Similarity=-0.037  Sum_probs=73.0

Q ss_pred             cCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cc
Q 032462            3 LLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HL   78 (140)
Q Consensus         3 ~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~   78 (140)
                      ..|. +|+..|. +..+..+++++..+              .++.+...++.+.+   .....||+|+++.+++.-  +.
T Consensus       113 ~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~  175 (254)
T 1xtp_A          113 TKLYATTDLLEPVKHMLEEAKRELAGM--------------PVGKFILASMETAT---LPPNTYDLIVIQWTAIYLTDAD  175 (254)
T ss_dssp             HHHCSEEEEEESCHHHHHHHHHHTTTS--------------SEEEEEESCGGGCC---CCSSCEEEEEEESCGGGSCHHH
T ss_pred             HhhcCEEEEEeCCHHHHHHHHHHhccC--------------CceEEEEccHHHCC---CCCCCeEEEEEcchhhhCCHHH
Confidence            3444 7999998 78888888876432              34566666665432   224689999999998875  45


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEecCh-------------hHHHHHHHHH-HhcCeEEeec
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEIRST-------------SVHEQMLQMW-KSNFNVKLVP  125 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~R~~-------------~~~~~F~~~~-~~~f~v~~v~  125 (140)
                      ...+++.+.++++|+|.+++.......             .+.+.+.+.+ +.||++..+.
T Consensus       176 ~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  236 (254)
T 1xtp_A          176 FVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA  236 (254)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEee
Confidence            778888899999999999887641100             0134556666 4699977653

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=97.62  E-value=0.00016  Score=53.24  Aligned_cols=82  Identities=18%  Similarity=0.092  Sum_probs=65.8

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      |++|+..|. +..+...++|+..+..            .++.+...|..+.+   ....+||+|+++.+++.-...+.++
T Consensus        61 ~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l  125 (276)
T 3mgg_A           61 DAEITSIDISPESLEKARENTEKNGI------------KNVKFLQANIFSLP---FEDSSFDHIFVCFVLEHLQSPEEAL  125 (276)
T ss_dssp             TSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEECCGGGCC---SCTTCEEEEEEESCGGGCSCHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCC------------CCcEEEEcccccCC---CCCCCeeEEEEechhhhcCCHHHHH
Confidence            579999998 8899999999987753            35666666665432   2257899999999998877778999


Q ss_pred             HHHHHhcCCCeEEEEEEE
Q 032462           84 QTIFALSGPKTTILLGYE  101 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~  101 (140)
                      +.+.++++|+|.+++...
T Consensus       126 ~~~~~~L~pgG~l~~~~~  143 (276)
T 3mgg_A          126 KSLKKVLKPGGTITVIEG  143 (276)
T ss_dssp             HHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHcCCCcEEEEEEc
Confidence            999999999999988653

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=97.61  E-value=0.00037  Score=49.94  Aligned_cols=81  Identities=11%  Similarity=0.149  Sum_probs=61.3

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch--HH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL--EP   81 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~--~~   81 (140)
                      |++|+..|. +..+...++++..+              +++.+..-|..+.+.    ...||+|+++.+++.-...  ..
T Consensus        68 ~~~v~~vD~s~~~~~~a~~~~~~~--------------~~~~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~~~~~~~  129 (234)
T 3dtn_A           68 EATFTLVDMSEKMLEIAKNRFRGN--------------LKVKYIEADYSKYDF----EEKYDMVVSALSIHHLEDEDKKE  129 (234)
T ss_dssp             TCEEEEEESCHHHHHHHHHHTCSC--------------TTEEEEESCTTTCCC----CSCEEEEEEESCGGGSCHHHHHH
T ss_pred             CCeEEEEECCHHHHHHHHHhhccC--------------CCEEEEeCchhccCC----CCCceEEEEeCccccCCHHHHHH
Confidence            679999998 78888888776322              266777777665432    2689999999998876433  35


Q ss_pred             HHHHHHHhcCCCeEEEEEEEec
Q 032462           82 LLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        82 L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      +++.+.++++|+|.++++...+
T Consensus       130 ~l~~~~~~LkpgG~l~~~~~~~  151 (234)
T 3dtn_A          130 LYKRSYSILKESGIFINADLVH  151 (234)
T ss_dssp             HHHHHHHHEEEEEEEEEEEECB
T ss_pred             HHHHHHHhcCCCcEEEEEEecC
Confidence            8899999999999999887544

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=97.59  E-value=0.00017  Score=50.82  Aligned_cols=95  Identities=14%  Similarity=0.155  Sum_probs=67.3

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      +++|+..|. +..+..+++|+..+..            .++.+...++.+...    ..+||+|++..+    .....++
T Consensus        89 ~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~~----~~~~D~i~~~~~----~~~~~~l  148 (207)
T 1jsx_A           89 EAHFTLLDSLGKRVRFLRQVQHELKL------------ENIEPVQSRVEEFPS----EPPFDGVISRAF----ASLNDMV  148 (207)
T ss_dssp             TSEEEEEESCHHHHHHHHHHHHHTTC------------SSEEEEECCTTTSCC----CSCEEEEECSCS----SSHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCC------------CCeEEEecchhhCCc----cCCcCEEEEecc----CCHHHHH
Confidence            569999998 8899999999988753            237888888876531    358999996432    4456788


Q ss_pred             HHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEe
Q 032462           84 QTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKL  123 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~  123 (140)
                      ..+..+++|+|.+++.......+   . ++.+.++|.+.+
T Consensus       149 ~~~~~~L~~gG~l~~~~~~~~~~---~-~~~~~~g~~~~~  184 (207)
T 1jsx_A          149 SWCHHLPGEQGRFYALKGQMPED---E-IALLPEEYQVES  184 (207)
T ss_dssp             HHHTTSEEEEEEEEEEESSCCHH---H-HHTSCTTEEEEE
T ss_pred             HHHHHhcCCCcEEEEEeCCCchH---H-HHHHhcCCceee
Confidence            88888889999998876544332   2 233322887654

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=97.59  E-value=0.00053  Score=52.04  Aligned_cols=82  Identities=12%  Similarity=0.004  Sum_probs=64.8

Q ss_pred             CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--ccchHHH
Q 032462            5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--~~~~~~L   82 (140)
                      +.+|+.+|.+.+++..++|+..+..           ..++++...|..++  .   ...||+|+...++.+  +.....+
T Consensus       191 ~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~---~~~~D~v~~~~vl~~~~~~~~~~~  254 (334)
T 2ip2_A          191 SARGVMLDREGSLGVARDNLSSLLA-----------GERVSLVGGDMLQE--V---PSNGDIYLLSRIIGDLDEAASLRL  254 (334)
T ss_dssp             TCEEEEEECTTCTHHHHHHTHHHHH-----------TTSEEEEESCTTTC--C---CSSCSEEEEESCGGGCCHHHHHHH
T ss_pred             CCEEEEeCcHHHHHHHHHHHhhcCC-----------CCcEEEecCCCCCC--C---CCCCCEEEEchhccCCCHHHHHHH
Confidence            5689999998899999999887653           25688888888763  2   247999999999953  4455688


Q ss_pred             HHHHHHhcCCCeEEEEEEEe
Q 032462           83 LQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~  102 (140)
                      ++.+.+.++|+|.+++....
T Consensus       255 l~~~~~~L~pgG~l~i~e~~  274 (334)
T 2ip2_A          255 LGNCREAMAGDGRVVVIERT  274 (334)
T ss_dssp             HHHHHHHSCTTCEEEEEECC
T ss_pred             HHHHHHhcCCCCEEEEEEec
Confidence            99999999999999887543

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=97.57  E-value=0.00025  Score=52.29  Aligned_cols=124  Identities=13%  Similarity=0.110  Sum_probs=71.3

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccC--------CCCCC---------CCCceE-EEEeecCCCcccc-cc
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQM--------NPGSD---------LLGSIQ-AVELDWGNEDHIK-AV   60 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~--------~~~~~---------~~~~v~-~~~LdWg~~~~~~-~~   60 (140)
                      |..|+ +|+.+|. +..+..++++++.+...+..+        ..+..         ...+++ +...|=.+....+ ..
T Consensus        74 ~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~  153 (263)
T 2a14_A           74 ACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAV  153 (263)
T ss_dssp             GGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCC
T ss_pred             HHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccc
Confidence            56787 7999998 789999999887653211000        00000         001232 3333333321111 12


Q ss_pred             CCCccEEEEeecccC-c---cchHHHHHHHHHhcCCCeEEEEEEEecC-------------hhHHHHHHHHH-HhcCeEE
Q 032462           61 APPFDYIIGTDVVYA-E---HLLEPLLQTIFALSGPKTTILLGYEIRS-------------TSVHEQMLQMW-KSNFNVK  122 (140)
Q Consensus        61 ~~~~D~IlasDviY~-~---~~~~~L~~tl~~ll~~~~~~~~~~~~R~-------------~~~~~~F~~~~-~~~f~v~  122 (140)
                      ..+||+|+++-|+-. .   +....+++-+.++|+|+|.++++.....             .-+.+.+.+.+ +.||.+.
T Consensus       154 ~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~  233 (263)
T 2a14_A          154 LPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIE  233 (263)
T ss_dssp             CCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred             cCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEEE
Confidence            458999999988753 1   3344566667788999999988853221             00234556666 4699876


Q ss_pred             eec
Q 032462          123 LVP  125 (140)
Q Consensus       123 ~v~  125 (140)
                      ++.
T Consensus       234 ~~~  236 (263)
T 2a14_A          234 QLL  236 (263)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            653

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=97.56  E-value=0.0029  Score=44.85  Aligned_cols=107  Identities=15%  Similarity=0.003  Sum_probs=72.7

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc------
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH------   77 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~------   77 (140)
                      +++|+..|. +..+..+++|+..++.            .++.+..-|+.+.... .....||+|+..-..-...      
T Consensus        65 ~~~v~gvD~s~~~l~~a~~~~~~~~~------------~~v~~~~~d~~~~~~~-~~~~~~D~i~~~~~~~~~~~~~~~~  131 (214)
T 1yzh_A           65 DINYIGIDIQKSVLSYALDKVLEVGV------------PNIKLLWVDGSDLTDY-FEDGEIDRLYLNFSDPWPKKRHEKR  131 (214)
T ss_dssp             TSEEEEEESCHHHHHHHHHHHHHHCC------------SSEEEEECCSSCGGGT-SCTTCCSEEEEESCCCCCSGGGGGG
T ss_pred             CCCEEEEEcCHHHHHHHHHHHHHcCC------------CCEEEEeCCHHHHHhh-cCCCCCCEEEEECCCCccccchhhh
Confidence            569999998 8899999999988753            4677777777653210 1245799999763211100      


Q ss_pred             --chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecC
Q 032462           78 --LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK  126 (140)
Q Consensus        78 --~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~  126 (140)
                        ..+.++..+..+++|+|.+++......  ..+...+.+ +.||.+..+..
T Consensus       132 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~  181 (214)
T 1yzh_A          132 RLTYKTFLDTFKRILPENGEIHFKTDNRG--LFEYSLVSFSQYGMKLNGVWL  181 (214)
T ss_dssp             STTSHHHHHHHHHHSCTTCEEEEEESCHH--HHHHHHHHHHHHTCEEEEEES
T ss_pred             ccCCHHHHHHHHHHcCCCcEEEEEeCCHH--HHHHHHHHHHHCCCeeeeccc
Confidence              235799999999999999988764332  233444555 45898877654

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=97.55  E-value=0.0001  Score=57.80  Aligned_cols=102  Identities=16%  Similarity=0.056  Sum_probs=64.9

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeecccC---
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYA---   75 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~~~D~IlasDviY~---   75 (140)
                      |+.|+ +|+..|. +..+..+++|++.|+..          ..++++..-|..+... ......+||+|+. |--|.   
T Consensus       231 a~~ga~~V~~vD~s~~al~~A~~N~~~n~~~----------~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~-DPP~~~~~  299 (385)
T 2b78_A          231 AMGGAMATTSVDLAKRSRALSLAHFEANHLD----------MANHQLVVMDVFDYFKYARRHHLTYDIIII-DPPSFARN  299 (385)
T ss_dssp             HHTTBSEEEEEESCTTHHHHHHHHHHHTTCC----------CTTEEEEESCHHHHHHHHHHTTCCEEEEEE-CCCCC---
T ss_pred             HHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----------ccceEEEECCHHHHHHHHHHhCCCccEEEE-CCCCCCCC
Confidence            45587 8999998 88999999999999751          1256666655443211 1111358999985 43332   


Q ss_pred             ----c---cchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH
Q 032462           76 ----E---HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW  115 (140)
Q Consensus        76 ----~---~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~  115 (140)
                          .   .....|+.....+++|+|.++++...+... .+.|.+.+
T Consensus       300 ~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~-~~~~~~~i  345 (385)
T 2b78_A          300 KKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT-VSQFKKQI  345 (385)
T ss_dssp             --CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-HHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC-HHHHHHHH
Confidence                1   123345566667889999999888766542 34455443

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.55  E-value=0.00012  Score=56.39  Aligned_cols=110  Identities=16%  Similarity=0.054  Sum_probs=67.2

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccc-cccCCCccEEEEeeccc-C---
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-KAVAPPFDYIIGTDVVY-A---   75 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~-~~~~~~~D~IlasDviY-~---   75 (140)
                      |+.|++|+..|. +..+..+++|++.|+..          ..++++..-|..+.... .....+||+|++ |.-| .   
T Consensus       172 a~~ga~V~~VD~s~~al~~a~~n~~~~gl~----------~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~-dPP~~~~~~  240 (332)
T 2igt_A          172 AAAGAEVTHVDASKKAIGWAKENQVLAGLE----------QAPIRWICEDAMKFIQREERRGSTYDIILT-DPPKFGRGT  240 (332)
T ss_dssp             HHTTCEEEEECSCHHHHHHHHHHHHHHTCT----------TSCEEEECSCHHHHHHHHHHHTCCBSEEEE-CCCSEEECT
T ss_pred             HHcCCEEEEEECCHHHHHHHHHHHHHcCCC----------ccceEEEECcHHHHHHHHHhcCCCceEEEE-CCccccCCc
Confidence            556889999998 88999999999999742          12355555444322110 001468999987 3222 1   


Q ss_pred             -------ccchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-----HhcCeEE
Q 032462           76 -------EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-----KSNFNVK  122 (140)
Q Consensus        76 -------~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-----~~~f~v~  122 (140)
                             ......++..+..+++|+|.+++............|.+.+     +.|+.++
T Consensus       241 ~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~  299 (332)
T 2igt_A          241 HGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA  299 (332)
T ss_dssp             TCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence                   1234567777788899999977766554321123333333     2466665

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=97.54  E-value=9.7e-05  Score=54.92  Aligned_cols=93  Identities=14%  Similarity=0.080  Sum_probs=65.8

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe-ecccCccc-
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT-DVVYAEHL-   78 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas-DviY~~~~-   78 (140)
                      +..|++|+.+|. +..+...++|+..+....        ...++.+..-+|.+.+..-....+||+|++. .++..-.. 
T Consensus        76 ~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~--------~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~  147 (293)
T 3thr_A           76 VEEGFSVTSVDASDKMLKYALKERWNRRKEP--------AFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDS  147 (293)
T ss_dssp             HHTTCEEEEEESCHHHHHHHHHHHHHTTTSH--------HHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCS
T ss_pred             HHCCCeEEEEECCHHHHHHHHHhhhhccccc--------ccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCcc
Confidence            456889999998 789999999886554321        1235566666665432100124689999998 88765444 


Q ss_pred             ------hHHHHHHHHHhcCCCeEEEEEEEe
Q 032462           79 ------LEPLLQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        79 ------~~~L~~tl~~ll~~~~~~~~~~~~  102 (140)
                            ...+++.+.++++|+|.+++....
T Consensus       148 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          148 KGDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             SSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence                  788999999999999999887653

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=97.53  E-value=0.00072  Score=50.97  Aligned_cols=107  Identities=16%  Similarity=0.175  Sum_probs=65.5

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      |+.|+ +|++.|. |..+..+++|+++|+.           .+.+.+..-|-.+..    ....||.|+.-..-+..   
T Consensus       144 a~~g~~~V~avD~np~a~~~~~~N~~~N~v-----------~~~v~~~~~D~~~~~----~~~~~D~Vi~~~p~~~~---  205 (278)
T 3k6r_A          144 AVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----------EDRMSAYNMDNRDFP----GENIADRILMGYVVRTH---  205 (278)
T ss_dssp             HHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----------TTTEEEECSCTTTCC----CCSCEEEEEECCCSSGG---
T ss_pred             HHhcCCeEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEeCcHHHhc----cccCCCEEEECCCCcHH---
Confidence            55675 9999998 8899999999999986           356666655543321    24679988865443333   


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEecC----hhHHHHHHHHHH-hcCeEEeecCC
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIRS----TSVHEQMLQMWK-SNFNVKLVPKA  127 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R~----~~~~~~F~~~~~-~~f~v~~v~~~  127 (140)
                       .++.....+++++|.+.+-.-...    ....+.+-+.++ .|+.++.+..+
T Consensus       206 -~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~~~~~  257 (278)
T 3k6r_A          206 -EFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLNEL  257 (278)
T ss_dssp             -GGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEEEE
T ss_pred             -HHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcEEEEEEE
Confidence             344444567788887644221111    112334444443 58887765443

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=97.53  E-value=0.00029  Score=49.71  Aligned_cols=80  Identities=13%  Similarity=0.067  Sum_probs=59.7

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccc--
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL--   78 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~--   78 (140)
                      +..|++|+..|. +..+...++    +.            ..++.+...|..+.    ....+||+|+++.+++.-..  
T Consensus        65 ~~~~~~v~~~D~s~~~~~~a~~----~~------------~~~~~~~~~d~~~~----~~~~~~D~v~~~~~l~~~~~~~  124 (218)
T 3ou2_A           65 SGLADRVTALDGSAEMIAEAGR----HG------------LDNVEFRQQDLFDW----TPDRQWDAVFFAHWLAHVPDDR  124 (218)
T ss_dssp             HHHSSEEEEEESCHHHHHHHGG----GC------------CTTEEEEECCTTSC----CCSSCEEEEEEESCGGGSCHHH
T ss_pred             HhcCCeEEEEeCCHHHHHHHHh----cC------------CCCeEEEecccccC----CCCCceeEEEEechhhcCCHHH
Confidence            445889999998 778887776    11            14567777666544    22578999999998877543  


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEE
Q 032462           79 LEPLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      ...+++.+.++++|+|.+++...
T Consensus       125 ~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          125 FEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCeEEEEEeC
Confidence            57888888899999999988754

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=97.50  E-value=0.00041  Score=51.60  Aligned_cols=81  Identities=14%  Similarity=0.032  Sum_probs=64.8

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      |++|+.+|. +..+...++++..+.             .++++..-|..+.+   . ..+||+|++..++..-...+.++
T Consensus        47 ~~~v~gvD~s~~~~~~a~~~~~~~~-------------~~v~~~~~d~~~~~---~-~~~fD~v~~~~~l~~~~~~~~~l  109 (284)
T 3gu3_A           47 GSKYTGIDSGETLLAEARELFRLLP-------------YDSEFLEGDATEIE---L-NDKYDIAICHAFLLHMTTPETML  109 (284)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHSSS-------------SEEEEEESCTTTCC---C-SSCEEEEEEESCGGGCSSHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhcC-------------CceEEEEcchhhcC---c-CCCeeEEEECChhhcCCCHHHHH
Confidence            579999998 788999998886542             25677777776532   1 35899999999998887788999


Q ss_pred             HHHHHhcCCCeEEEEEEEe
Q 032462           84 QTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~~  102 (140)
                      +.+.++++|+|.+++....
T Consensus       110 ~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A          110 QKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             HHHHHTEEEEEEEEEEECC
T ss_pred             HHHHHHcCCCCEEEEEecc
Confidence            9999999999999877654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.49  E-value=0.0009  Score=48.96  Aligned_cols=106  Identities=15%  Similarity=0.112  Sum_probs=72.6

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      +++|+..|. ++.+..+++|++.++.           ..++++..-|..+.........+||+|+. |.  ......+++
T Consensus        88 ~~~v~~vD~s~~~~~~a~~~~~~~g~-----------~~~v~~~~~d~~~~l~~~~~~~~fD~V~~-d~--~~~~~~~~l  153 (248)
T 3tfw_A           88 DGQLLTLEADAHHAQVARENLQLAGV-----------DQRVTLREGPALQSLESLGECPAFDLIFI-DA--DKPNNPHYL  153 (248)
T ss_dssp             TCEEEEEECCHHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHTCCSCCCCSEEEE-CS--CGGGHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHhcCCCCCeEEEEE-CC--chHHHHHHH
Confidence            579999998 8899999999998764           24677777665432111111348999986 43  345567788


Q ss_pred             HHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHHHh--cCeEEee
Q 032462           84 QTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWKS--NFNVKLV  124 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~~R~~------------~~~~~F~~~~~~--~f~v~~v  124 (140)
                      ..+..+++|+|.+++.......            .....|.+.+..  .|....+
T Consensus       154 ~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  208 (248)
T 3tfw_A          154 RWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATAL  208 (248)
T ss_dssp             HHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             HHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEe
Confidence            8888999999988876555431            235678877743  5666554

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=97.49  E-value=0.00098  Score=51.26  Aligned_cols=81  Identities=10%  Similarity=-0.039  Sum_probs=62.4

Q ss_pred             CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc--chHHH
Q 032462            5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--LLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~--~~~~L   82 (140)
                      +.+++.+|.+.++...++|+..+..           ..++++...|..++  .+   ..||+|+++.++++-.  ....+
T Consensus       206 ~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~~---~~~D~v~~~~vl~~~~~~~~~~~  269 (374)
T 1qzz_A          206 HLRGTLVELAGPAERARRRFADAGL-----------ADRVTVAEGDFFKP--LP---VTADVVLLSFVLLNWSDEDALTI  269 (374)
T ss_dssp             TCEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC--CS---CCEEEEEEESCGGGSCHHHHHHH
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhcCC-----------CCceEEEeCCCCCc--CC---CCCCEEEEeccccCCCHHHHHHH
Confidence            4699999998899999999987653           24688888887652  22   2499999999996532  33578


Q ss_pred             HHHHHHhcCCCeEEEEEEE
Q 032462           83 LQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~  101 (140)
                      ++.+...++|+|.+++...
T Consensus       270 l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          270 LRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             HHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHHhcCCCcEEEEEec
Confidence            8888899999998887654

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=97.49  E-value=0.0023  Score=46.88  Aligned_cols=84  Identities=7%  Similarity=-0.097  Sum_probs=62.5

Q ss_pred             CEEEEecc-hh------HHHHHHHHHHHhhcccccCCCCCCCCCceEEEEee-cCCCccccccCCCccEEEEeecccCcc
Q 032462            6 CNVITTDQ-IE------VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD-WGNEDHIKAVAPPFDYIIGTDVVYAEH   77 (140)
Q Consensus         6 a~Vv~TD~-~~------vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~Ld-Wg~~~~~~~~~~~~D~IlasDviY~~~   77 (140)
                      ++|+..|. +.      .+...++|+..+..           ..++.+...| +.... .+....+||+|++..+++.-.
T Consensus        69 ~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~-~~~~~~~fD~v~~~~~l~~~~  136 (275)
T 3bkx_A           69 GHVTGIDIASPDYGAPLTLGQAWNHLLAGPL-----------GDRLTVHFNTNLSDDL-GPIADQHFDRVVLAHSLWYFA  136 (275)
T ss_dssp             CEEEEECSSCTTCCSSSCHHHHHHHHHTSTT-----------GGGEEEECSCCTTTCC-GGGTTCCCSEEEEESCGGGSS
T ss_pred             CEEEEEECCccccccHHHHHHHHHHHHhcCC-----------CCceEEEECChhhhcc-CCCCCCCEEEEEEccchhhCC
Confidence            69999998 54      89999999887653           2466777665 32221 222356899999999998876


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEEE
Q 032462           78 LLEPLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      ....+.+.++.++.|+|.+++...
T Consensus       137 ~~~~~~~~~~~l~~~gG~l~~~~~  160 (275)
T 3bkx_A          137 SANALALLFKNMAAVCDHVDVAEW  160 (275)
T ss_dssp             CHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred             CHHHHHHHHHHHhCCCCEEEEEEe
Confidence            667788999999988999888653

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=97.49  E-value=0.00024  Score=55.67  Aligned_cols=112  Identities=14%  Similarity=0.085  Sum_probs=69.6

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeecccCc--
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAE--   76 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~~~D~IlasDviY~~--   76 (140)
                      |+.|+ +|+..|. +..+..+++|++.|+..           .++.+..-|..+... ......+||+|+. |.-|..  
T Consensus       236 a~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~-----------~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~-dpP~~~~~  303 (396)
T 2as0_A          236 AIAGADEVIGIDKSPRAIETAKENAKLNGVE-----------DRMKFIVGSAFEEMEKLQKKGEKFDIVVL-DPPAFVQH  303 (396)
T ss_dssp             HHTTCSEEEEEESCHHHHHHHHHHHHHTTCG-----------GGEEEEESCHHHHHHHHHHTTCCEEEEEE-CCCCSCSS
T ss_pred             HHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----------ccceEEECCHHHHHHHHHhhCCCCCEEEE-CCCCCCCC
Confidence            45577 9999998 88999999999999742           256666666543211 1111468999986 544432  


Q ss_pred             --------cchHHHHHHHHHhcCCCeEEEEEEEecChh--HHHHHHH-HH-HhcCeEEeec
Q 032462           77 --------HLLEPLLQTIFALSGPKTTILLGYEIRSTS--VHEQMLQ-MW-KSNFNVKLVP  125 (140)
Q Consensus        77 --------~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~--~~~~F~~-~~-~~~f~v~~v~  125 (140)
                              .....++..+..+++|+|.++++...+...  .....+. .+ +.+..++.+.
T Consensus       304 ~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~  364 (396)
T 2as0_A          304 EKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLE  364 (396)
T ss_dssp             GGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEESS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence                    234556666677788999887776655432  1222232 23 3455666555

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=97.48  E-value=0.00049  Score=51.45  Aligned_cols=84  Identities=11%  Similarity=-0.005  Sum_probs=65.8

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccc---ccCCCccEEEEeecccCccch
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK---AVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~---~~~~~~D~IlasDviY~~~~~   79 (140)
                      .|++|+.+|. +..+...++|+..+..          ...++.+...+..+.+...   ....+||+|+++.+++.- ..
T Consensus        60 ~~~~v~gvD~s~~~~~~a~~~~~~~~~----------~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~  128 (299)
T 3g5t_A           60 PFEQIIGSDLSATMIKTAEVIKEGSPD----------TYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-DF  128 (299)
T ss_dssp             CCSEEEEEESCHHHHHHHHHHHHHCC-----------CCTTEEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS-CH
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHhccC----------CCCceEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh-CH
Confidence            4679999998 8899999999988711          1357888888887643111   012689999999999888 88


Q ss_pred             HHHHHHHHHhcCCCeEEEE
Q 032462           80 EPLLQTIFALSGPKTTILL   98 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~   98 (140)
                      ..+++.+.++++|+|.+++
T Consensus       129 ~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          129 EKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             HHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHhcCCCcEEEE
Confidence            8899999999999999876

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=97.47  E-value=0.0011  Score=50.64  Aligned_cols=84  Identities=10%  Similarity=0.006  Sum_probs=66.3

Q ss_pred             CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHHH
Q 032462            5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~L   82 (140)
                      +.+++..|.+.++...++++..+..           ..++++...|..+.+..  ....||+|+++.++.+-  +....+
T Consensus       203 ~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~~--~~~~~D~v~~~~vlh~~~~~~~~~~  269 (352)
T 3mcz_A          203 QLTGQIWDLPTTRDAARKTIHAHDL-----------GGRVEFFEKNLLDARNF--EGGAADVVMLNDCLHYFDAREAREV  269 (352)
T ss_dssp             TCEEEEEECGGGHHHHHHHHHHTTC-----------GGGEEEEECCTTCGGGG--TTCCEEEEEEESCGGGSCHHHHHHH
T ss_pred             CCeEEEEECHHHHHHHHHHHHhcCC-----------CCceEEEeCCcccCccc--CCCCccEEEEecccccCCHHHHHHH
Confidence            4689999998899999999887653           35789999888765421  24569999999999753  356788


Q ss_pred             HHHHHHhcCCCeEEEEEEE
Q 032462           83 LQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~  101 (140)
                      ++.+.+.++|+|.+++...
T Consensus       270 l~~~~~~L~pgG~l~i~e~  288 (352)
T 3mcz_A          270 IGHAAGLVKPGGALLILTM  288 (352)
T ss_dssp             HHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHcCCCCEEEEEEe
Confidence            8999999999999988754

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.47  E-value=0.00019  Score=50.99  Aligned_cols=88  Identities=14%  Similarity=0.116  Sum_probs=62.7

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      ++.|+ +|+..|. +..+..+++|++.|+.            .++++..-|+.+.  .+.....||+|++ |..|.....
T Consensus        73 ~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~------------~~v~~~~~D~~~~--~~~~~~~fD~V~~-~~p~~~~~~  137 (202)
T 2fpo_A           73 LSRYAAGATLIEMDRAVSQQLIKNLATLKA------------GNARVVNSNAMSF--LAQKGTPHNIVFV-DPPFRRGLL  137 (202)
T ss_dssp             HHTTCSEEEEECSCHHHHHHHHHHHHHTTC------------CSEEEECSCHHHH--HSSCCCCEEEEEE-CCSSSTTTH
T ss_pred             HhcCCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEECCHHHH--HhhcCCCCCEEEE-CCCCCCCcH
Confidence            34575 9999998 8899999999998863            3455555444331  1122458999886 455777777


Q ss_pred             HHHHHHHHH--hcCCCeEEEEEEEecC
Q 032462           80 EPLLQTIFA--LSGPKTTILLGYEIRS  104 (140)
Q Consensus        80 ~~L~~tl~~--ll~~~~~~~~~~~~R~  104 (140)
                      +.+++.+..  +++|+|.+++....+.
T Consensus       138 ~~~l~~l~~~~~L~pgG~l~i~~~~~~  164 (202)
T 2fpo_A          138 EETINLLEDNGWLADEALIYVESEVEN  164 (202)
T ss_dssp             HHHHHHHHHTTCEEEEEEEEEEEEGGG
T ss_pred             HHHHHHHHhcCccCCCcEEEEEECCCc
Confidence            788888876  4889999998877554

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=97.47  E-value=0.0017  Score=46.45  Aligned_cols=76  Identities=14%  Similarity=0.094  Sum_probs=54.9

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe-ecccCc---cchH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT-DVVYAE---HLLE   80 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas-DviY~~---~~~~   80 (140)
                      .+|+..|. +..+..+++|+..+.             .++.+...+..+.+    ...+||+|++. |++..-   +...
T Consensus        55 ~~v~~vD~s~~~~~~a~~~~~~~~-------------~~~~~~~~d~~~~~----~~~~fD~v~~~~~~~~~~~~~~~~~  117 (243)
T 3d2l_A           55 YEVTGVDLSEEMLEIAQEKAMETN-------------RHVDFWVQDMRELE----LPEPVDAITILCDSLNYLQTEADVK  117 (243)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHTT-------------CCCEEEECCGGGCC----CSSCEEEEEECTTGGGGCCSHHHHH
T ss_pred             CeEEEEECCHHHHHHHHHhhhhcC-------------CceEEEEcChhhcC----CCCCcCEEEEeCCchhhcCCHHHHH
Confidence            68999998 889999999987654             23455555554322    13689999986 466543   4566


Q ss_pred             HHHHHHHHhcCCCeEEEE
Q 032462           81 PLLQTIFALSGPKTTILL   98 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~   98 (140)
                      .+++.+.++++|+|.+++
T Consensus       118 ~~l~~~~~~L~pgG~l~~  135 (243)
T 3d2l_A          118 QTFDSAARLLTDGGKLLF  135 (243)
T ss_dssp             HHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHhcCCCeEEEE
Confidence            778888888999998876

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.47  E-value=8e-05  Score=50.65  Aligned_cols=89  Identities=21%  Similarity=0.145  Sum_probs=62.2

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCc-cccccCCCccEEEEeecccCccch
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~-~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      ++.|++|+..|. +..+..+++|+..|..             ++++..-|+.+.. ..+....+||+|++.-. |. ...
T Consensus        60 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~-~~-~~~  124 (171)
T 1ws6_A           60 ASEGWEAVLVEKDPEAVRLLKENVRRTGL-------------GARVVALPVEVFLPEAKAQGERFTVAFMAPP-YA-MDL  124 (171)
T ss_dssp             HHTTCEEEEECCCHHHHHHHHHHHHHHTC-------------CCEEECSCHHHHHHHHHHTTCCEEEEEECCC-TT-SCT
T ss_pred             HHCCCeEEEEeCCHHHHHHHHHHHHHcCC-------------ceEEEeccHHHHHHhhhccCCceEEEEECCC-Cc-hhH
Confidence            456888999998 8899999999988752             4455555554321 11111347999987554 55 566


Q ss_pred             HHHHHHHH--HhcCCCeEEEEEEEecCh
Q 032462           80 EPLLQTIF--ALSGPKTTILLGYEIRST  105 (140)
Q Consensus        80 ~~L~~tl~--~ll~~~~~~~~~~~~R~~  105 (140)
                      +.+++.+.  ++++|+|.+++....+..
T Consensus       125 ~~~~~~~~~~~~L~~gG~~~~~~~~~~~  152 (171)
T 1ws6_A          125 AALFGELLASGLVEAGGLYVLQHPKDLY  152 (171)
T ss_dssp             THHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred             HHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence            67777777  888999999988776543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.45  E-value=0.00063  Score=50.25  Aligned_cols=102  Identities=17%  Similarity=0.138  Sum_probs=70.1

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHH---hhcccccCCCCCCCCCceEEEEeecCCCccc----cccCCCccEEEEeecccCc
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEW---NTSRISQMNPGSDLLGSIQAVELDWGNEDHI----KAVAPPFDYIIGTDVVYAE   76 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~---N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~----~~~~~~~D~IlasDviY~~   76 (140)
                      +++|+..|. ++.+..+++|+..   |..           ..++.+..-|+.+....    .....+||+|++.-..+..
T Consensus        60 ~~~v~gvDi~~~~~~~a~~n~~~~~~~~l-----------~~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~  128 (260)
T 2ozv_A           60 KAEVTLYERSQEMAEFARRSLELPDNAAF-----------SARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDA  128 (260)
T ss_dssp             TEEEEEEESSHHHHHHHHHHTTSGGGTTT-----------GGGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC---
T ss_pred             CCeEEEEECCHHHHHHHHHHHHhhhhCCC-----------cceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCC
Confidence            469999998 8899999999988   543           24678888887765210    0124689999975222221


Q ss_pred             ------------------cchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCe
Q 032462           77 ------------------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN  120 (140)
Q Consensus        77 ------------------~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~  120 (140)
                                        ...+.+++.+..+++|+|.+++.+....   ...+++.+++.|.
T Consensus       129 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~l~~~~~  187 (260)
T 2ozv_A          129 GDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQS---VAEIIAACGSRFG  187 (260)
T ss_dssp             ------------------CCHHHHHHHHHHHEEEEEEEEEEECGGG---HHHHHHHHTTTEE
T ss_pred             CCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHH---HHHHHHHHHhcCC
Confidence                              2367888889999999999988765432   4567777755565

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=97.44  E-value=0.00018  Score=51.09  Aligned_cols=126  Identities=13%  Similarity=0.015  Sum_probs=72.2

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccC-CCccEEEEeecccC--c
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA-PPFDYIIGTDVVYA--E   76 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~-~~~D~IlasDviY~--~   76 (140)
                      ||..|++|+..|. +.++...+++...+...............++++..-|-.+.+   ... .+||+|+..-++..  +
T Consensus        40 la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~---~~~~~~fD~v~~~~~l~~l~~  116 (203)
T 1pjz_A           40 LSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT---ARDIGHCAAFYDRAAMIALPA  116 (203)
T ss_dssp             HHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST---HHHHHSEEEEEEESCGGGSCH
T ss_pred             HHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCC---cccCCCEEEEEECcchhhCCH
Confidence            4567999999998 789998887654321000000000000235666665554332   111 58999998877653  2


Q ss_pred             cchHHHHHHHHHhcCCCeEEE-EEEEecC-----h---hHHHHHHHHHHhcCeEEeecCCCC
Q 032462           77 HLLEPLLQTIFALSGPKTTIL-LGYEIRS-----T---SVHEQMLQMWKSNFNVKLVPKAKE  129 (140)
Q Consensus        77 ~~~~~L~~tl~~ll~~~~~~~-~~~~~R~-----~---~~~~~F~~~~~~~f~v~~v~~~~l  129 (140)
                      +....+++.+.++++|+|.++ +......     +   -+.+...+.++.||+++.+...+.
T Consensus       117 ~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~gf~i~~~~~~~~  178 (203)
T 1pjz_A          117 DMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWEVTKVGGQDT  178 (203)
T ss_dssp             HHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCSSEEEEEEEESSC
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcCCcEEEEeccccc
Confidence            345568888999999999844 3333211     0   013444455544998877655544

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=97.43  E-value=0.00031  Score=55.05  Aligned_cols=114  Identities=18%  Similarity=0.166  Sum_probs=71.4

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeecccCc--
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAE--   76 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~~~D~IlasDviY~~--   76 (140)
                      |+.|+ +|+..|. +..+..+++|++.|+..          ..++++..-|..+... ......+||+|++ |.-|..  
T Consensus       239 a~~g~~~V~~vD~s~~al~~a~~n~~~ngl~----------~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~-dpP~~~~~  307 (396)
T 3c0k_A          239 LMGGCSQVVSVDTSQEALDIARQNVELNKLD----------LSKAEFVRDDVFKLLRTYRDRGEKFDVIVM-DPPKFVEN  307 (396)
T ss_dssp             HHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----------GGGEEEEESCHHHHHHHHHHTTCCEEEEEE-CCSSTTTC
T ss_pred             HHCCCCEEEEEECCHHHHHHHHHHHHHcCCC----------ccceEEEECCHHHHHHHHHhcCCCCCEEEE-CCCCCCCC
Confidence            55676 9999998 88999999999999740          1256666655543211 1111458999886 443321  


Q ss_pred             --------cchHHHHHHHHHhcCCCeEEEEEEEecChh--HHHHHHH-HH-HhcCeEEeecC
Q 032462           77 --------HLLEPLLQTIFALSGPKTTILLGYEIRSTS--VHEQMLQ-MW-KSNFNVKLVPK  126 (140)
Q Consensus        77 --------~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~--~~~~F~~-~~-~~~f~v~~v~~  126 (140)
                              .....++.....+++|+|.++++.......  .....++ .+ +.|+.++.+..
T Consensus       308 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~~  369 (396)
T 3c0k_A          308 KSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQ  369 (396)
T ss_dssp             SSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEE
Confidence                    345667777777888999998877665432  1233333 33 35766655543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=97.43  E-value=0.00041  Score=53.55  Aligned_cols=82  Identities=17%  Similarity=0.167  Sum_probs=64.4

Q ss_pred             ccCCC-EEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeec---ccCcc
Q 032462            2 ALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV---VYAEH   77 (140)
Q Consensus         2 A~lGa-~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDv---iY~~~   77 (140)
                      |+.|+ +|+..|..+++..+++|++.|+.           .+++++..-++.+.+ .  ...+||+|++.-+   +..+.
T Consensus        85 a~~g~~~v~gvD~s~~l~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~-~--~~~~fD~Iis~~~~~~l~~~~  150 (349)
T 3q7e_A           85 AKAGARKVIGIECSSISDYAVKIVKANKL-----------DHVVTIIKGKVEEVE-L--PVEKVDIIISEWMGYCLFYES  150 (349)
T ss_dssp             HHTTCSEEEEEECSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTCC-C--SSSCEEEEEECCCBBTBTBTC
T ss_pred             HHCCCCEEEEECcHHHHHHHHHHHHHcCC-----------CCcEEEEECcHHHcc-C--CCCceEEEEEccccccccCch
Confidence            45677 99999986699999999999875           356888888887653 1  2468999998654   44457


Q ss_pred             chHHHHHHHHHhcCCCeEEE
Q 032462           78 LLEPLLQTIFALSGPKTTIL   97 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~   97 (140)
                      ..+.++..+.++++|+|.++
T Consensus       151 ~~~~~l~~~~r~LkpgG~li  170 (349)
T 3q7e_A          151 MLNTVLHARDKWLAPDGLIF  170 (349)
T ss_dssp             CHHHHHHHHHHHEEEEEEEE
T ss_pred             hHHHHHHHHHHhCCCCCEEc
Confidence            88889999999999999875

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.42  E-value=0.00018  Score=51.06  Aligned_cols=91  Identities=14%  Similarity=0.095  Sum_probs=62.1

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCC-ccEEEEeecccCccc
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP-FDYIIGTDVVYAEHL   78 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~-~D~IlasDviY~~~~   78 (140)
                      +..|+ +|+..|. ++.+..+++|++.|+..          ..++++..-|..+... .....+ ||+|++.-. |....
T Consensus        72 ~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~----------~~~v~~~~~d~~~~~~-~~~~~~~fD~I~~~~~-~~~~~  139 (201)
T 2ift_A           72 LSRQAKKVTFLELDKTVANQLKKNLQTLKCS----------SEQAEVINQSSLDFLK-QPQNQPHFDVVFLDPP-FHFNL  139 (201)
T ss_dssp             HHTTCSEEEEECSCHHHHHHHHHHHHHTTCC----------TTTEEEECSCHHHHTT-SCCSSCCEEEEEECCC-SSSCH
T ss_pred             HHccCCEEEEEECCHHHHHHHHHHHHHhCCC----------ccceEEEECCHHHHHH-hhccCCCCCEEEECCC-CCCcc
Confidence            34565 9999998 78999999999988631          1345555444332111 001357 999996544 77667


Q ss_pred             hHHHHHHHH--HhcCCCeEEEEEEEecC
Q 032462           79 LEPLLQTIF--ALSGPKTTILLGYEIRS  104 (140)
Q Consensus        79 ~~~L~~tl~--~ll~~~~~~~~~~~~R~  104 (140)
                      .+.+++.+.  .+++|+|.+++....+.
T Consensus       140 ~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          140 AEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             HHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            777888874  46899999998877664

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=97.41  E-value=0.0023  Score=49.14  Aligned_cols=80  Identities=13%  Similarity=0.166  Sum_probs=63.0

Q ss_pred             CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHHH
Q 032462            5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~L   82 (140)
                      +.+|+..|.+.++...++|+..+..           .+++++...|..+.+ .    ..+|+|+.+.++++-  +....+
T Consensus       214 ~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~-~----~~~D~v~~~~vlh~~~d~~~~~~  277 (359)
T 1x19_A          214 ELDSTILNLPGAIDLVNENAAEKGV-----------ADRMRGIAVDIYKES-Y----PEADAVLFCRILYSANEQLSTIM  277 (359)
T ss_dssp             TCEEEEEECGGGHHHHHHHHHHTTC-----------TTTEEEEECCTTTSC-C----CCCSEEEEESCGGGSCHHHHHHH
T ss_pred             CCeEEEEecHHHHHHHHHHHHhcCC-----------CCCEEEEeCccccCC-C----CCCCEEEEechhccCCHHHHHHH
Confidence            5699999998899999999987653           246888888887652 1    234999999999653  347788


Q ss_pred             HHHHHHhcCCCeEEEEEE
Q 032462           83 LQTIFALSGPKTTILLGY  100 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~  100 (140)
                      ++.+.+.++|+|.+++..
T Consensus       278 l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          278 CKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             HHHHHTTCCTTCEEEEEE
T ss_pred             HHHHHHhcCCCCEEEEEe
Confidence            888999999999998765

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.40  E-value=0.00071  Score=47.26  Aligned_cols=105  Identities=11%  Similarity=0.035  Sum_probs=67.9

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--------
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--------   76 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--------   76 (140)
                      ++|+..|. +..+..+++|++.++.           ..++++..-|..+...  ....+||+|++. ..|.+        
T Consensus        48 ~~v~~vD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~--~~~~~fD~v~~~-~~~~~~~~~~~~~  113 (197)
T 3eey_A           48 GRVFGFDIQDKAIANTTKKLTDLNL-----------IDRVTLIKDGHQNMDK--YIDCPVKAVMFN-LGYLPSGDHSIST  113 (197)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTC-----------GGGEEEECSCGGGGGG--TCCSCEEEEEEE-ESBCTTSCTTCBC
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCC-----------CCCeEEEECCHHHHhh--hccCCceEEEEc-CCcccCccccccc
Confidence            59999998 8899999999998764           2456666666543321  234689999865 44422        


Q ss_pred             --cchHHHHHHHHHhcCCCeEEEEEEEecC------hhHHHHHHHHH-HhcCeEEee
Q 032462           77 --HLLEPLLQTIFALSGPKTTILLGYEIRS------TSVHEQMLQMW-KSNFNVKLV  124 (140)
Q Consensus        77 --~~~~~L~~tl~~ll~~~~~~~~~~~~R~------~~~~~~F~~~~-~~~f~v~~v  124 (140)
                        .....+++.+.++++|+|.+++..-...      ......|++.+ ..+|.+...
T Consensus       114 ~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~~~  170 (197)
T 3eey_A          114 RPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGVDQKKFIVQRT  170 (197)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTSCTTTEEEEEE
T ss_pred             CcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhCCCCcEEEEEE
Confidence              1224577888888999999887653221      12244555555 356776543

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=97.39  E-value=0.0021  Score=49.97  Aligned_cols=86  Identities=13%  Similarity=0.094  Sum_probs=60.1

Q ss_pred             ccCC--CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-cCCCccEEEEeecccCcc
Q 032462            2 ALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEH   77 (140)
Q Consensus         2 A~lG--a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-~~~~~D~IlasDviY~~~   77 (140)
                      |+.|  .+|+..|. +.++..+++|++.|+.            .++++..-|+.+.  .+. ....||+|+. |..|...
T Consensus       190 a~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~------------~~v~~~~~D~~~~--l~~~~~~~fD~Vi~-~~p~~~~  254 (373)
T 2qm3_A          190 MLSGLPKRIAVLDIDERLTKFIEKAANEIGY------------EDIEIFTFDLRKP--LPDYALHKFDTFIT-DPPETLE  254 (373)
T ss_dssp             HHHTCCSEEEEECSCHHHHHHHHHHHHHHTC------------CCEEEECCCTTSC--CCTTTSSCBSEEEE-CCCSSHH
T ss_pred             HHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CCEEEEEChhhhh--chhhccCCccEEEE-CCCCchH
Confidence            3445  48999998 8899999999998863            2577777777652  221 2357999985 6666544


Q ss_pred             chHHHHHHHHHhcCCCe-EEEEEEEe
Q 032462           78 LLEPLLQTIFALSGPKT-TILLGYEI  102 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~-~~~~~~~~  102 (140)
                      ....+++.+.+.++|+| .++++...
T Consensus       255 ~~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          255 AIRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             HHHHHHHHHHHHcccCCeEEEEEEec
Confidence            45677777778899988 44555544

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=97.36  E-value=0.0015  Score=50.15  Aligned_cols=88  Identities=13%  Similarity=0.158  Sum_probs=61.3

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      +++|+..|. +..+..+++|++.|+..           .++++..-|..+..      .+||+|+. |.-|   ....++
T Consensus       216 ~~~V~~vD~s~~ai~~a~~n~~~n~l~-----------~~v~~~~~D~~~~~------~~fD~Vi~-dpP~---~~~~~l  274 (336)
T 2yx1_A          216 AKKIYAIDINPHAIELLKKNIKLNKLE-----------HKIIPILSDVREVD------VKGNRVIM-NLPK---FAHKFI  274 (336)
T ss_dssp             SSEEEEEESCHHHHHHHHHHHHHTTCT-----------TTEEEEESCGGGCC------CCEEEEEE-CCTT---TGGGGH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCC-----------CcEEEEECChHHhc------CCCcEEEE-CCcH---hHHHHH
Confidence            349999998 88999999999999741           35666655554321      68999986 5433   334777


Q ss_pred             HHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH
Q 032462           84 QTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK  116 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~  116 (140)
                      ..+..+++|+|.+++..-.+.   ...+.+.++
T Consensus       275 ~~~~~~L~~gG~l~~~~~~~~---~~~~~~~l~  304 (336)
T 2yx1_A          275 DKALDIVEEGGVIHYYTIGKD---FDKAIKLFE  304 (336)
T ss_dssp             HHHHHHEEEEEEEEEEEEESS---SHHHHHHHH
T ss_pred             HHHHHHcCCCCEEEEEEeecC---chHHHHHHH
Confidence            888888889998877555444   234555553

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=97.36  E-value=0.00016  Score=52.10  Aligned_cols=98  Identities=14%  Similarity=0.122  Sum_probs=65.7

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccccc-CCCccEEEEeecccCccc
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV-APPFDYIIGTDVVYAEHL   78 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~-~~~~D~IlasDviY~~~~   78 (140)
                      ||..|++|+.+|. +..+...++|    .             .++++...|+.+..  +.. ..+||+|+++      ..
T Consensus        66 l~~~~~~v~~vD~s~~~~~~a~~~----~-------------~~~~~~~~d~~~~~--~~~~~~~fD~v~~~------~~  120 (226)
T 3m33_A           66 FGPQAARWAAYDFSPELLKLARAN----A-------------PHADVYEWNGKGEL--PAGLGAPFGLIVSR------RG  120 (226)
T ss_dssp             HGGGSSEEEEEESCHHHHHHHHHH----C-------------TTSEEEECCSCSSC--CTTCCCCEEEEEEE------SC
T ss_pred             HHHcCCEEEEEECCHHHHHHHHHh----C-------------CCceEEEcchhhcc--CCcCCCCEEEEEeC------CC
Confidence            3556889999998 7889988887    1             34677777775432  222 4689999987      24


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecC
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK  126 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~  126 (140)
                      ...+++.+..+++|+|.++.......   ...+.+.+ +.||.+..+..
T Consensus       121 ~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~l~~~Gf~~~~~~~  166 (226)
T 3m33_A          121 PTSVILRLPELAAPDAHFLYVGPRLN---VPEVPERLAAVGWDIVAEDH  166 (226)
T ss_dssp             CSGGGGGHHHHEEEEEEEEEEESSSC---CTHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCcEEEEeCCcCC---HHHHHHHHHHCCCeEEEEEe
Confidence            45667778888999999882222112   23455555 45888766543

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=97.36  E-value=0.0013  Score=48.09  Aligned_cols=104  Identities=13%  Similarity=0.051  Sum_probs=67.5

Q ss_pred             CccCC-C-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc
Q 032462            1 MALLG-C-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH   77 (140)
Q Consensus         1 lA~lG-a-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~   77 (140)
                      ||+.| + +|+++|. +..+...++|++.|+.           ..++.+..-|+-+.-.  . ..+||+|+-+-.  ...
T Consensus        33 la~~~~~~~V~avDi~~~al~~A~~N~~~~gl-----------~~~i~~~~~d~l~~l~--~-~~~~D~IviaG~--Gg~   96 (225)
T 3kr9_A           33 LVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL-----------KEKIQVRLANGLAAFE--E-TDQVSVITIAGM--GGR   96 (225)
T ss_dssp             HHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC-----------TTTEEEEECSGGGGCC--G-GGCCCEEEEEEE--CHH
T ss_pred             HHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CceEEEEECchhhhcc--c-CcCCCEEEEcCC--ChH
Confidence            35666 3 8999998 8899999999999985           2578888888754321  1 126998875543  224


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEe
Q 032462           78 LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKL  123 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~  123 (140)
                      .+..++......+.+++.+++... ........++.  +.||.+..
T Consensus        97 ~i~~Il~~~~~~L~~~~~lVlq~~-~~~~~vr~~L~--~~Gf~i~~  139 (225)
T 3kr9_A           97 LIARILEEGLGKLANVERLILQPN-NREDDLRIWLQ--DHGFQIVA  139 (225)
T ss_dssp             HHHHHHHHTGGGCTTCCEEEEEES-SCHHHHHHHHH--HTTEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEEEEECC-CCHHHHHHHHH--HCCCEEEE
Confidence            456666666666778888766544 33322333332  45887554

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=97.35  E-value=0.00055  Score=52.67  Aligned_cols=82  Identities=18%  Similarity=0.156  Sum_probs=61.6

Q ss_pred             ccCCC-EEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeec---ccCcc
Q 032462            2 ALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV---VYAEH   77 (140)
Q Consensus         2 A~lGa-~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDv---iY~~~   77 (140)
                      |+.|+ +|+..|..+++..+++|++.|+.           ..++++..-+..+.+   ....+||+|++.-+   +....
T Consensus        83 a~~g~~~v~gvD~s~~~~~a~~~~~~~~~-----------~~~i~~~~~d~~~~~---~~~~~~D~Ivs~~~~~~l~~~~  148 (340)
T 2fyt_A           83 AKAGAKKVLGVDQSEILYQAMDIIRLNKL-----------EDTITLIKGKIEEVH---LPVEKVDVIISEWMGYFLLFES  148 (340)
T ss_dssp             HHTTCSEEEEEESSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTSC---CSCSCEEEEEECCCBTTBTTTC
T ss_pred             HHcCCCEEEEEChHHHHHHHHHHHHHcCC-----------CCcEEEEEeeHHHhc---CCCCcEEEEEEcCchhhccCHH
Confidence            45677 99999985589999999998864           246777776665432   12368999998773   44456


Q ss_pred             chHHHHHHHHHhcCCCeEEE
Q 032462           78 LLEPLLQTIFALSGPKTTIL   97 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~   97 (140)
                      ..+.++..+.++++|+|.++
T Consensus       149 ~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          149 MLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             HHHHHHHHHHHHEEEEEEEE
T ss_pred             HHHHHHHHHHhhcCCCcEEE
Confidence            67788888899999999886

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=97.35  E-value=0.00033  Score=50.18  Aligned_cols=103  Identities=12%  Similarity=0.118  Sum_probs=66.2

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccC-----CCccEEEEeecccCccc
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA-----PPFDYIIGTDVVYAEHL   78 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~-----~~~D~IlasDviY~~~~   78 (140)
                      |++|+..|. +..+...++|++.++.           ..++++..-|..+.  .+...     .+||+|+..-.   ...
T Consensus        83 ~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--l~~~~~~~~~~~fD~V~~d~~---~~~  146 (221)
T 3u81_A           83 GARLLTMEINPDCAAITQQMLNFAGL-----------QDKVTILNGASQDL--IPQLKKKYDVDTLDMVFLDHW---KDR  146 (221)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEESCHHHH--GGGTTTTSCCCCCSEEEECSC---GGG
T ss_pred             CCEEEEEeCChHHHHHHHHHHHHcCC-----------CCceEEEECCHHHH--HHHHHHhcCCCceEEEEEcCC---ccc
Confidence            679999998 8899999999998864           24577766665332  11112     68999985421   222


Q ss_pred             hHHHHHHHH--HhcCCCeEEEEEEEecChhHHHHHHHHHH--hcCeEEeec
Q 032462           79 LEPLLQTIF--ALSGPKTTILLGYEIRSTSVHEQMLQMWK--SNFNVKLVP  125 (140)
Q Consensus        79 ~~~L~~tl~--~ll~~~~~~~~~~~~R~~~~~~~F~~~~~--~~f~v~~v~  125 (140)
                      ..+....+.  .+++|+|.+++....+..  ...|.+.++  ..|....+|
T Consensus       147 ~~~~~~~~~~~~~LkpgG~lv~~~~~~~~--~~~~~~~l~~~~~~~~~~~~  195 (221)
T 3u81_A          147 YLPDTLLLEKCGLLRKGTVLLADNVIVPG--TPDFLAYVRGSSSFECTHYS  195 (221)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEESCCCCCC--CHHHHHHHHHCTTEEEEEEE
T ss_pred             chHHHHHHHhccccCCCeEEEEeCCCCcc--hHHHHHHHhhCCCceEEEcc
Confidence            333333333  788999999876555433  356676663  357666655

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=97.34  E-value=0.0006  Score=52.14  Aligned_cols=82  Identities=21%  Similarity=0.176  Sum_probs=61.2

Q ss_pred             ccCCC-EEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeec---ccCcc
Q 032462            2 ALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV---VYAEH   77 (140)
Q Consensus         2 A~lGa-~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDv---iY~~~   77 (140)
                      |+.|+ +|+..|...++..+++|++.|+.           ..++++..-+..+.+   ....+||+|++.-+   +..+.
T Consensus        57 a~~g~~~v~~vD~s~~~~~a~~~~~~~~~-----------~~~i~~~~~d~~~~~---~~~~~~D~Ivs~~~~~~l~~~~  122 (328)
T 1g6q_1           57 AKHGAKHVIGVDMSSIIEMAKELVELNGF-----------SDKITLLRGKLEDVH---LPFPKVDIIISEWMGYFLLYES  122 (328)
T ss_dssp             HHTCCSEEEEEESSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTSC---CSSSCEEEEEECCCBTTBSTTC
T ss_pred             HHCCCCEEEEEChHHHHHHHHHHHHHcCC-----------CCCEEEEECchhhcc---CCCCcccEEEEeCchhhcccHH
Confidence            45687 99999986788999999998864           246777766655432   11368999998743   33456


Q ss_pred             chHHHHHHHHHhcCCCeEEE
Q 032462           78 LLEPLLQTIFALSGPKTTIL   97 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~   97 (140)
                      ..+.++..+.++++|+|.++
T Consensus       123 ~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          123 MMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CHHHHHHHHHHHEEEEEEEE
T ss_pred             HHHHHHHHHHhhcCCCeEEE
Confidence            77888898999999999886

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.33  E-value=0.00064  Score=49.34  Aligned_cols=96  Identities=10%  Similarity=-0.021  Sum_probs=67.3

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHh-hcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N-~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L   82 (140)
                      +++|+..|. ++.+..+++|++.+ +.            .++.+...|+.+.+   .....||+|+. |    ......+
T Consensus       121 ~~~v~~~D~~~~~~~~a~~~~~~~~g~------------~~v~~~~~d~~~~~---~~~~~~D~v~~-~----~~~~~~~  180 (258)
T 2pwy_A          121 KGLVESYEARPHHLAQAERNVRAFWQV------------ENVRFHLGKLEEAE---LEEAAYDGVAL-D----LMEPWKV  180 (258)
T ss_dssp             TSEEEEEESCHHHHHHHHHHHHHHCCC------------CCEEEEESCGGGCC---CCTTCEEEEEE-E----SSCGGGG
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHhcCC------------CCEEEEECchhhcC---CCCCCcCEEEE-C----CcCHHHH
Confidence            569999998 88999999999887 51            45666666665431   12357999997 2    2334467


Q ss_pred             HHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEE
Q 032462           83 LQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVK  122 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~  122 (140)
                      +..+..+++|+|.+++......  ....+.+.+ +.+|...
T Consensus       181 l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~~~gf~~~  219 (258)
T 2pwy_A          181 LEKAALALKPDRFLVAYLPNIT--QVLELVRAAEAHPFRLE  219 (258)
T ss_dssp             HHHHHHHEEEEEEEEEEESCHH--HHHHHHHHHTTTTEEEE
T ss_pred             HHHHHHhCCCCCEEEEEeCCHH--HHHHHHHHHHHCCCceE
Confidence            8888888999999888765442  245666767 4578743

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=97.33  E-value=0.00041  Score=50.29  Aligned_cols=82  Identities=20%  Similarity=0.223  Sum_probs=58.4

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe--ecccC-cc
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT--DVVYA-EH   77 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas--DviY~-~~   77 (140)
                      +..|++|+..|. +..+..+++|+..+..             ++.+..-|..+.+    ...+||+|++.  -..|. .+
T Consensus        60 ~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-------------~v~~~~~d~~~~~----~~~~fD~v~~~~~~~~~~~~~  122 (252)
T 1wzn_A           60 AERGYEVVGLDLHEEMLRVARRKAKERNL-------------KIEFLQGDVLEIA----FKNEFDAVTMFFSTIMYFDEE  122 (252)
T ss_dssp             HHTTCEEEEEESCHHHHHHHHHHHHHTTC-------------CCEEEESCGGGCC----CCSCEEEEEECSSGGGGSCHH
T ss_pred             HHCCCeEEEEECCHHHHHHHHHHHHhcCC-------------ceEEEECChhhcc----cCCCccEEEEcCCchhcCCHH
Confidence            456889999998 8899999999876542             3556665655432    13579999974  22333 34


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEE
Q 032462           78 LLEPLLQTIFALSGPKTTILLGY  100 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~  100 (140)
                      ....+++.+.++++|+|.+++..
T Consensus       123 ~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          123 DLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHcCCCeEEEEec
Confidence            56778888888999999988754

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=97.32  E-value=0.00035  Score=54.46  Aligned_cols=84  Identities=14%  Similarity=0.132  Sum_probs=63.5

Q ss_pred             ccCCC-EEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC---cc
Q 032462            2 ALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA---EH   77 (140)
Q Consensus         2 A~lGa-~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~---~~   77 (140)
                      |+.|+ +|+..|...++..+++|++.|+.           ...+++..-+..+.. .   ..+||+|++.=+.|.   +.
T Consensus        82 a~~g~~~V~gvD~s~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~-~---~~~~D~Iv~~~~~~~l~~e~  146 (376)
T 3r0q_C           82 AQAGARKVYAVEATKMADHARALVKANNL-----------DHIVEVIEGSVEDIS-L---PEKVDVIISEWMGYFLLRES  146 (376)
T ss_dssp             HHTTCSEEEEEESSTTHHHHHHHHHHTTC-----------TTTEEEEESCGGGCC-C---SSCEEEEEECCCBTTBTTTC
T ss_pred             HhcCCCEEEEEccHHHHHHHHHHHHHcCC-----------CCeEEEEECchhhcC-c---CCcceEEEEcChhhcccchH
Confidence            55688 99999987889999999999875           256777777775432 1   268999998443444   35


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEE
Q 032462           78 LLEPLLQTIFALSGPKTTILLGY  100 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~  100 (140)
                      ..+.++..+.++++|+|.+++..
T Consensus       147 ~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          147 MFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             THHHHHHHHHHHEEEEEEEESSE
T ss_pred             HHHHHHHHHHhhCCCCeEEEEec
Confidence            67889999999999999886543

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=97.31  E-value=0.00094  Score=48.40  Aligned_cols=76  Identities=9%  Similarity=-0.042  Sum_probs=59.7

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      |++|+..|. +..+...+++    .             .++.+...|..+.+    ....||+|+++.+++.-.....++
T Consensus        57 ~~~v~~~D~s~~~~~~a~~~----~-------------~~~~~~~~d~~~~~----~~~~fD~v~~~~~l~~~~~~~~~l  115 (259)
T 2p35_A           57 VNVITGIDSDDDMLEKAADR----L-------------PNTNFGKADLATWK----PAQKADLLYANAVFQWVPDHLAVL  115 (259)
T ss_dssp             TTSEEEEESCHHHHHHHHHH----S-------------TTSEEEECCTTTCC----CSSCEEEEEEESCGGGSTTHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHh----C-------------CCcEEEECChhhcC----ccCCcCEEEEeCchhhCCCHHHHH
Confidence            679999998 7788888877    1             23456666665432    256899999999999877778889


Q ss_pred             HHHHHhcCCCeEEEEEEE
Q 032462           84 QTIFALSGPKTTILLGYE  101 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~  101 (140)
                      +.+.++++|+|.+++...
T Consensus       116 ~~~~~~L~pgG~l~~~~~  133 (259)
T 2p35_A          116 SQLMDQLESGGVLAVQMP  133 (259)
T ss_dssp             HHHGGGEEEEEEEEEEEE
T ss_pred             HHHHHhcCCCeEEEEEeC
Confidence            999999999999988765

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=97.30  E-value=0.00094  Score=49.63  Aligned_cols=130  Identities=14%  Similarity=0.049  Sum_probs=73.5

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhc------------ccccCCCCC------CCCCceEEEEeecCCCcccc---ccCC
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTS------------RISQMNPGS------DLLGSIQAVELDWGNEDHIK---AVAP   62 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~------------~~~~~~~~~------~~~~~v~~~~LdWg~~~~~~---~~~~   62 (140)
                      |.+|+.+|. +..+..+++++..+..            ........-      .....+.+...|-.+...++   ....
T Consensus        94 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~  173 (289)
T 2g72_A           94 FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPL  173 (289)
T ss_dssp             CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCS
T ss_pred             CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhhhceEEecccCCCCCccccccCCC
Confidence            669999998 7888888887653210            000000000      00001334444544321111   1134


Q ss_pred             CccEEEEeecccC----ccchHHHHHHHHHhcCCCeEEEEEEEecC-------------hhHHHHHHHHH-HhcCeEEee
Q 032462           63 PFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEIRS-------------TSVHEQMLQMW-KSNFNVKLV  124 (140)
Q Consensus        63 ~~D~IlasDviY~----~~~~~~L~~tl~~ll~~~~~~~~~~~~R~-------------~~~~~~F~~~~-~~~f~v~~v  124 (140)
                      +||+|+++.++..    ......+++.+.++|+|+|.+++....+.             .-+.+.+.+.+ +.||.+..+
T Consensus       174 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~  253 (289)
T 2g72_A          174 PADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDL  253 (289)
T ss_dssp             SEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             CCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEe
Confidence            6999999999876    34567778888888999999988643211             01234555666 469987766


Q ss_pred             cCCCCCcccC
Q 032462          125 PKAKESTMWG  134 (140)
Q Consensus       125 ~~~~l~~~~~  134 (140)
                      .....+..|.
T Consensus       254 ~~~~~~~~~~  263 (289)
T 2g72_A          254 RTYIMPAHLQ  263 (289)
T ss_dssp             EEEECCGGGC
T ss_pred             eEeecccccc
Confidence            5444334443

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.30  E-value=0.0018  Score=46.68  Aligned_cols=96  Identities=9%  Similarity=0.033  Sum_probs=65.3

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL   82 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L   82 (140)
                      .+++|+..|. ++.+..+++|++.+..           ..++.+..-|+.+..   .....||+|+..     ......+
T Consensus       112 ~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~---~~~~~~D~v~~~-----~~~~~~~  172 (248)
T 2yvl_A          112 VAGEVWTFEAVEEFYKTAQKNLKKFNL-----------GKNVKFFNVDFKDAE---VPEGIFHAAFVD-----VREPWHY  172 (248)
T ss_dssp             HSSEEEEECSCHHHHHHHHHHHHHTTC-----------CTTEEEECSCTTTSC---CCTTCBSEEEEC-----SSCGGGG
T ss_pred             hCCEEEEEecCHHHHHHHHHHHHHcCC-----------CCcEEEEEcChhhcc---cCCCcccEEEEC-----CcCHHHH
Confidence            3679999997 8899999999987753           245666666665432   013579999972     2234467


Q ss_pred             HHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCe
Q 032462           83 LQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN  120 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~  120 (140)
                      ++.+.++++|+|.+++.......  ...+.+.+++.|.
T Consensus       173 l~~~~~~L~~gG~l~~~~~~~~~--~~~~~~~l~~~f~  208 (248)
T 2yvl_A          173 LEKVHKSLMEGAPVGFLLPTANQ--VIKLLESIENYFG  208 (248)
T ss_dssp             HHHHHHHBCTTCEEEEEESSHHH--HHHHHHHSTTTEE
T ss_pred             HHHHHHHcCCCCEEEEEeCCHHH--HHHHHHHHHhhCC
Confidence            78888899999999887764422  3455555543354

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.29  E-value=0.00073  Score=48.18  Aligned_cols=108  Identities=16%  Similarity=0.033  Sum_probs=72.5

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccc--cCCCccEEEEeecccCccchH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA--VAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~--~~~~~D~IlasDviY~~~~~~   80 (140)
                      +++|+..|. ++.+..+++|++.++.           .+++.+..-+..+... ...  ...+||+|+. |.  ......
T Consensus        89 ~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~-~~--~~~~~~  154 (225)
T 3tr6_A           89 DGTLITCDVDEKSTALAKEYWEKAGL-----------SDKIGLRLSPAKDTLAELIHAGQAWQYDLIYI-DA--DKANTD  154 (225)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHHHHTTTCTTCEEEEEE-CS--CGGGHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCC-----------CCceEEEeCCHHHHHHHhhhccCCCCccEEEE-CC--CHHHHH
Confidence            579999998 8899999999988764           2457776666543211 000  0168999983 33  244567


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHHH--hcCeEEeecC
Q 032462           81 PLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWK--SNFNVKLVPK  126 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~R~~------------~~~~~F~~~~~--~~f~v~~v~~  126 (140)
                      .++..+..+++|+|.+++.......            .....|.+.+.  ..|....+|.
T Consensus       155 ~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~  214 (225)
T 3tr6_A          155 LYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIPI  214 (225)
T ss_dssp             HHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred             HHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence            7888888999999999876544321            13567777774  3677666665

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=97.29  E-value=0.00034  Score=54.57  Aligned_cols=113  Identities=12%  Similarity=0.064  Sum_probs=69.2

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeecccCc-----
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAE-----   76 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~~~D~IlasDviY~~-----   76 (140)
                      .+.+|+..|. +..+..+++|++.|+.            .++++..-|..+... ......+||+|+. |.-|..     
T Consensus       230 ~~~~v~~vD~s~~~~~~a~~n~~~n~~------------~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~-dpP~~~~~~~~  296 (382)
T 1wxx_A          230 GFREVVAVDSSAEALRRAEENARLNGL------------GNVRVLEANAFDLLRRLEKEGERFDLVVL-DPPAFAKGKKD  296 (382)
T ss_dssp             HEEEEEEEESCHHHHHHHHHHHHHTTC------------TTEEEEESCHHHHHHHHHHTTCCEEEEEE-CCCCSCCSTTS
T ss_pred             hCCEEEEEECCHHHHHHHHHHHHHcCC------------CCceEEECCHHHHHHHHHhcCCCeeEEEE-CCCCCCCChhH
Confidence            3458999998 8899999999999974            225555544432211 0011468999985 654432     


Q ss_pred             -----cchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHH----HH-HhcCeEEeecCCCCC
Q 032462           77 -----HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQ----MW-KSNFNVKLVPKAKES  130 (140)
Q Consensus        77 -----~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~----~~-~~~f~v~~v~~~~l~  130 (140)
                           .....++..+..+++|+|.++++....... .+.|.+    .+ +.+..++.+.....+
T Consensus       297 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~i~~~~~~~g~~~~~i~~~~~~  359 (382)
T 1wxx_A          297 VERAYRAYKEVNLRAIKLLKEGGILATASCSHHMT-EPLFYAMVAEAAQDAHRLLRVVEKRGQP  359 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-HHHHHHHHHHHHHHTTCCEEEEEEECCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCC-HHHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence                 234567777777889999988877655432 223333    23 345555555443333

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.28  E-value=0.0014  Score=51.27  Aligned_cols=86  Identities=9%  Similarity=0.003  Sum_probs=60.5

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC-----ccc
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-----EHL   78 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~-----~~~   78 (140)
                      |++|+..|. +..+...++|+..|+..         ...++++..-|..+.    ....+||+|++...++.     ...
T Consensus       246 ~~~V~gvD~s~~al~~Ar~n~~~ngl~---------~~~~v~~~~~D~~~~----~~~~~fD~Ii~nppfh~~~~~~~~~  312 (375)
T 4dcm_A          246 QAKVVFVDESPMAVASSRLNVETNMPE---------ALDRCEFMINNALSG----VEPFRFNAVLCNPPFHQQHALTDNV  312 (375)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHHCGG---------GGGGEEEEECSTTTT----CCTTCEEEEEECCCC-------CCH
T ss_pred             CCEEEEEECcHHHHHHHHHHHHHcCCC---------cCceEEEEechhhcc----CCCCCeeEEEECCCcccCcccCHHH
Confidence            579999998 78999999999999752         123454454444432    12468999998776653     233


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEec
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      ...+++.+.+.++|+|.+++.....
T Consensus       313 ~~~~l~~~~~~LkpgG~l~iv~n~~  337 (375)
T 4dcm_A          313 AWEMFHHARRCLKINGELYIVANRH  337 (375)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             HHHHHHHHHHhCCCCcEEEEEEECC
Confidence            4468888889999999998876543

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=97.27  E-value=0.00082  Score=47.55  Aligned_cols=80  Identities=18%  Similarity=0.085  Sum_probs=55.7

Q ss_pred             cCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHH
Q 032462            3 LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEP   81 (140)
Q Consensus         3 ~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~   81 (140)
                      ..|++|+..|. +..+...+++..                   .+...+..+.. .+.....||+|+++++++.-.....
T Consensus        52 ~~~~~~~~~D~~~~~~~~~~~~~~-------------------~~~~~d~~~~~-~~~~~~~fD~v~~~~~l~~~~~~~~  111 (230)
T 3cc8_A           52 ENGTRVSGIEAFPEAAEQAKEKLD-------------------HVVLGDIETMD-MPYEEEQFDCVIFGDVLEHLFDPWA  111 (230)
T ss_dssp             TTTCEEEEEESSHHHHHHHHTTSS-------------------EEEESCTTTCC-CCSCTTCEEEEEEESCGGGSSCHHH
T ss_pred             hcCCeEEEEeCCHHHHHHHHHhCC-------------------cEEEcchhhcC-CCCCCCccCEEEECChhhhcCCHHH
Confidence            44789999998 777776665431                   22233332211 1122468999999999987666678


Q ss_pred             HHHHHHHhcCCCeEEEEEEEe
Q 032462           82 LLQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        82 L~~tl~~ll~~~~~~~~~~~~  102 (140)
                      +++.+.++++|+|.+++....
T Consensus       112 ~l~~~~~~L~~gG~l~~~~~~  132 (230)
T 3cc8_A          112 VIEKVKPYIKQNGVILASIPN  132 (230)
T ss_dssp             HHHHTGGGEEEEEEEEEEEEC
T ss_pred             HHHHHHHHcCCCCEEEEEeCC
Confidence            888888999999999988654

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.27  E-value=0.00099  Score=48.44  Aligned_cols=97  Identities=12%  Similarity=0.034  Sum_probs=67.4

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      +++|+..|. ++.+..+++|++.++.           .+.+.+..-|+.+.  .  ....||+|+. |    ......++
T Consensus       118 ~~~v~~~D~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~--~~~~~D~v~~-~----~~~~~~~l  177 (255)
T 3mb5_A          118 EGRVVSYEIREDFAKLAWENIKWAGF-----------DDRVTIKLKDIYEG--I--EEENVDHVIL-D----LPQPERVV  177 (255)
T ss_dssp             TSEEEEECSCHHHHHHHHHHHHHHTC-----------TTTEEEECSCGGGC--C--CCCSEEEEEE-C----SSCGGGGH
T ss_pred             CeEEEEEecCHHHHHHHHHHHHHcCC-----------CCceEEEECchhhc--c--CCCCcCEEEE-C----CCCHHHHH
Confidence            569999998 8899999999998864           24477777777643  2  2456999987 2    33345577


Q ss_pred             HHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hc--CeEEe
Q 032462           84 QTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SN--FNVKL  123 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~--f~v~~  123 (140)
                      ..+.++++|+|.+++......  ....+.+.++ .+  |...+
T Consensus       178 ~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~~~g~~f~~~~  218 (255)
T 3mb5_A          178 EHAAKALKPGGFFVAYTPCSN--QVMRLHEKLREFKDYFMKPR  218 (255)
T ss_dssp             HHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHTGGGBSCCE
T ss_pred             HHHHHHcCCCCEEEEEECCHH--HHHHHHHHHHHcCCCccccE
Confidence            888888999999887654332  2455666664 46  76433

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=97.27  E-value=0.001  Score=47.34  Aligned_cols=108  Identities=16%  Similarity=0.160  Sum_probs=72.2

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-cccc-CCCccEEEEeecccCccchHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAV-APPFDYIIGTDVVYAEHLLEP   81 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~-~~~~D~IlasDviY~~~~~~~   81 (140)
                      |++|+..|. +..+...++|+..++.           .+++++..-|..+... .+.. ..+||+|+. |..  ......
T Consensus        83 ~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~-d~~--~~~~~~  148 (223)
T 3duw_A           83 GGRVVTLEASEKHADIARSNIERANL-----------NDRVEVRTGLALDSLQQIENEKYEPFDFIFI-DAD--KQNNPA  148 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHHHHHTTCCCCSEEEE-CSC--GGGHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHHHHhcCCCCcCEEEE-cCC--cHHHHH
Confidence            679999998 8899999999988764           2457777666543211 1111 257999985 322  456678


Q ss_pred             HHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHHH--hcCeEEeecC
Q 032462           82 LLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWK--SNFNVKLVPK  126 (140)
Q Consensus        82 L~~tl~~ll~~~~~~~~~~~~R~~------------~~~~~F~~~~~--~~f~v~~v~~  126 (140)
                      ++..+..+++|+|.+++.......            .....|.+.+.  ..|....+|.
T Consensus       149 ~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~  207 (223)
T 3duw_A          149 YFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQT  207 (223)
T ss_dssp             HHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred             HHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEec
Confidence            888888999999987765444331            23567888774  3566666553

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=97.26  E-value=0.0021  Score=49.17  Aligned_cols=82  Identities=15%  Similarity=0.038  Sum_probs=62.9

Q ss_pred             CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHHH
Q 032462            5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~L   82 (140)
                      +.+++..|.+.++...++|+..+..           ..++++...|+.++  .+   ..||+|+.+.++++-  .....+
T Consensus       207 ~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~~---~~~D~v~~~~vl~~~~~~~~~~~  270 (360)
T 1tw3_A          207 HVSATVLEMAGTVDTARSYLKDEGL-----------SDRVDVVEGDFFEP--LP---RKADAIILSFVLLNWPDHDAVRI  270 (360)
T ss_dssp             TCEEEEEECTTHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC--CS---SCEEEEEEESCGGGSCHHHHHHH
T ss_pred             CCEEEEecCHHHHHHHHHHHHhcCC-----------CCceEEEeCCCCCC--CC---CCccEEEEcccccCCCHHHHHHH
Confidence            4589999998899999999987653           24788888888753  22   349999999999653  233578


Q ss_pred             HHHHHHhcCCCeEEEEEEEe
Q 032462           83 LQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~  102 (140)
                      ++.+.+.++|+|.+++....
T Consensus       271 l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          271 LTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             HHHHHHTEEEEEEEEEEECC
T ss_pred             HHHHHHhcCCCcEEEEEEEe
Confidence            88888899999999887554

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=97.24  E-value=0.0026  Score=45.71  Aligned_cols=106  Identities=10%  Similarity=0.026  Sum_probs=67.2

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      ++|+..|. +..+..+.+|...|              .++.+..-|..+....+.....||+|++ |+. .++....++.
T Consensus       103 ~~v~gvD~s~~~i~~~~~~a~~~--------------~~v~~~~~d~~~~~~~~~~~~~~D~V~~-~~~-~~~~~~~~~~  166 (233)
T 2ipx_A          103 GLVYAVEFSHRSGRDLINLAKKR--------------TNIIPVIEDARHPHKYRMLIAMVDVIFA-DVA-QPDQTRIVAL  166 (233)
T ss_dssp             CEEEEECCCHHHHHHHHHHHHHC--------------TTEEEECSCTTCGGGGGGGCCCEEEEEE-CCC-CTTHHHHHHH
T ss_pred             cEEEEEECCHHHHHHHHHHhhcc--------------CCeEEEEcccCChhhhcccCCcEEEEEE-cCC-CccHHHHHHH
Confidence            59999998 77788888887765              1345555555443222223568999996 555 4445556677


Q ss_pred             HHHHhcCCCeEEEEEEEecC----hhHHHHH---HHHH-HhcCeEEe-ecCC
Q 032462           85 TIFALSGPKTTILLGYEIRS----TSVHEQM---LQMW-KSNFNVKL-VPKA  127 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R~----~~~~~~F---~~~~-~~~f~v~~-v~~~  127 (140)
                      .+..+++|+|.+++....+.    ......|   .+.+ +.||.+.+ ++.+
T Consensus       167 ~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  218 (233)
T 2ipx_A          167 NAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLE  218 (233)
T ss_dssp             HHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEEEEECT
T ss_pred             HHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEEEEecC
Confidence            78889999999999766532    0111112   4445 45998766 4443

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=97.23  E-value=0.0017  Score=46.86  Aligned_cols=102  Identities=13%  Similarity=0.004  Sum_probs=66.3

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc--c
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--L   78 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~--~   78 (140)
                      +..|++|+..|. ++.+...+++     .               .+...+..+.. .+.....||+|++..++..-.  .
T Consensus        60 ~~~~~~v~gvD~s~~~~~~a~~~-----~---------------~~~~~d~~~~~-~~~~~~~fD~i~~~~~l~~~~~~~  118 (240)
T 3dli_A           60 KEEGIESIGVDINEDMIKFCEGK-----F---------------NVVKSDAIEYL-KSLPDKYLDGVMISHFVEHLDPER  118 (240)
T ss_dssp             HHHTCCEEEECSCHHHHHHHHTT-----S---------------EEECSCHHHHH-HTSCTTCBSEEEEESCGGGSCGGG
T ss_pred             HhCCCcEEEEECCHHHHHHHHhh-----c---------------ceeeccHHHHh-hhcCCCCeeEEEECCchhhCCcHH
Confidence            345889999998 7778777765     1               11111111100 011247899999999998755  5


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEecChh----------------HHHHHHHHH-HhcCeEEee
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEIRSTS----------------VHEQMLQMW-KSNFNVKLV  124 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~R~~~----------------~~~~F~~~~-~~~f~v~~v  124 (140)
                      ...+++.+.++++|+|.+++........                ..+.+.+.+ +.||++..+
T Consensus       119 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~  181 (240)
T 3dli_A          119 LFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKI  181 (240)
T ss_dssp             HHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEE
Confidence            6899999999999999998877643210                123444555 469986654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=97.22  E-value=0.0015  Score=47.23  Aligned_cols=107  Identities=9%  Similarity=0.071  Sum_probs=72.5

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccc-ccCCCccEEEEeecccCccchHH
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-AVAPPFDYIIGTDVVYAEHLLEP   81 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~-~~~~~~D~IlasDviY~~~~~~~   81 (140)
                      .+++|+..|. +..+...++|++.+..           ..++++..-|..+.  .+ ....+||+|+. |  ........
T Consensus        94 ~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~~~~~~~~fD~V~~-~--~~~~~~~~  157 (232)
T 3ntv_A           94 DDIHVTTIERNETMIQYAKQNLATYHF-----------ENQVRIIEGNALEQ--FENVNDKVYDMIFI-D--AAKAQSKK  157 (232)
T ss_dssp             TTCEEEEEECCHHHHHHHHHHHHHTTC-----------TTTEEEEESCGGGC--HHHHTTSCEEEEEE-E--TTSSSHHH
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECCHHHH--HHhhccCCccEEEE-c--CcHHHHHH
Confidence            3679999998 8899999999988764           24677776666443  22 22578999984 3  23456777


Q ss_pred             HHHHHHHhcCCCeEEEEEEEecCh-----------------hHHHHHHHHHH--hcCeEEeecC
Q 032462           82 LLQTIFALSGPKTTILLGYEIRST-----------------SVHEQMLQMWK--SNFNVKLVPK  126 (140)
Q Consensus        82 L~~tl~~ll~~~~~~~~~~~~R~~-----------------~~~~~F~~~~~--~~f~v~~v~~  126 (140)
                      +++.+..+++|+|.+++-...+..                 .....|.+.+.  ..|....+|.
T Consensus       158 ~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~  221 (232)
T 3ntv_A          158 FFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNI  221 (232)
T ss_dssp             HHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEECS
T ss_pred             HHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence            888888999999998773222210                 12467777774  3566666654

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=97.21  E-value=0.0071  Score=47.94  Aligned_cols=105  Identities=11%  Similarity=0.134  Sum_probs=70.6

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeecccCccc
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHL   78 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~~~D~IlasDviY~~~~   78 (140)
                      ||..+++|+..|. ++.+...++|++.|+.            .++.+..-|+.+... .+....+||+|+. |.=|... 
T Consensus       304 la~~~~~V~gvD~s~~al~~A~~n~~~~~~------------~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~-dPPr~g~-  369 (433)
T 1uwv_A          304 LATQAASVVGVEGVPALVEKGQQNARLNGL------------QNVTFYHENLEEDVTKQPWAKNGFDKVLL-DPARAGA-  369 (433)
T ss_dssp             HHTTSSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEECCTTSCCSSSGGGTTCCSEEEE-CCCTTCC-
T ss_pred             HHhhCCEEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEECCHHHHhhhhhhhcCCCCEEEE-CCCCccH-
Confidence            3556779999998 8899999999999864            367888888876321 1122457999885 6555432 


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEee
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLV  124 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v  124 (140)
                       ..+++.|.. ++|++.+|++..   +.+..+-...+ +.||.++.+
T Consensus       370 -~~~~~~l~~-~~p~~ivyvsc~---p~tlard~~~l~~~Gy~~~~~  411 (433)
T 1uwv_A          370 -AGVMQQIIK-LEPIRIVYVSCN---PATLARDSEALLKAGYTIARL  411 (433)
T ss_dssp             -HHHHHHHHH-HCCSEEEEEESC---HHHHHHHHHHHHHTTCEEEEE
T ss_pred             -HHHHHHHHh-cCCCeEEEEECC---hHHHHhhHHHHHHCCcEEEEE
Confidence             345565554 468888888764   33344434444 568998774

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=97.19  E-value=0.0014  Score=48.19  Aligned_cols=104  Identities=14%  Similarity=0.074  Sum_probs=67.5

Q ss_pred             CccCC-C-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc
Q 032462            1 MALLG-C-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH   77 (140)
Q Consensus         1 lA~lG-a-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~   77 (140)
                      ||+.| + +|+++|. +..+...++|++.|+.           ..++.+..-|+-+...   ...+||+|+-|=..-  +
T Consensus        39 la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl-----------~~~I~~~~gD~l~~~~---~~~~~D~IviaGmGg--~  102 (230)
T 3lec_A           39 LLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL-----------TSKIDVRLANGLSAFE---EADNIDTITICGMGG--R  102 (230)
T ss_dssp             HHHTTCEEEEEEEESSHHHHHHHHHHHHHTTC-----------TTTEEEEECSGGGGCC---GGGCCCEEEEEEECH--H
T ss_pred             HHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhhccc---cccccCEEEEeCCch--H
Confidence            35666 3 8999998 8899999999999975           3578888877765431   123799887543332  4


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeEEe
Q 032462           78 LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKL  123 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v~~  123 (140)
                      .+..++......+.+.+.++++-. ........++.  +.||.+..
T Consensus       103 lI~~IL~~~~~~l~~~~~lIlqp~-~~~~~lr~~L~--~~Gf~i~~  145 (230)
T 3lec_A          103 LIADILNNDIDKLQHVKTLVLQPN-NREDDLRKWLA--ANDFEIVA  145 (230)
T ss_dssp             HHHHHHHHTGGGGTTCCEEEEEES-SCHHHHHHHHH--HTTEEEEE
T ss_pred             HHHHHHHHHHHHhCcCCEEEEECC-CChHHHHHHHH--HCCCEEEE
Confidence            455666666666777787766653 33322333332  45887554

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.18  E-value=0.0014  Score=48.51  Aligned_cols=99  Identities=10%  Similarity=-0.049  Sum_probs=67.3

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      +++|+..|. ++.+..+++|++.+..           ..++.+..-|+.+.  .  ....||+|+. |    ......++
T Consensus       137 ~~~v~~vD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~--~~~~~D~V~~-~----~~~~~~~l  196 (277)
T 1o54_A          137 SGKVFAYEKREEFAKLAESNLTKWGL-----------IERVTIKVRDISEG--F--DEKDVDALFL-D----VPDPWNYI  196 (277)
T ss_dssp             TCEEEEECCCHHHHHHHHHHHHHTTC-----------GGGEEEECCCGGGC--C--SCCSEEEEEE-C----CSCGGGTH
T ss_pred             CcEEEEEECCHHHHHHHHHHHHHcCC-----------CCCEEEEECCHHHc--c--cCCccCEEEE-C----CcCHHHHH
Confidence            469999998 8899999999988753           13566666665433  1  1357999987 3    23334677


Q ss_pred             HHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEEeec
Q 032462           84 QTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVP  125 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~v~  125 (140)
                      ..+..+++|+|.+++......  ....+.+.++ .||...++-
T Consensus       197 ~~~~~~L~pgG~l~~~~~~~~--~~~~~~~~l~~~gf~~~~~~  237 (277)
T 1o54_A          197 DKCWEALKGGGRFATVCPTTN--QVQETLKKLQELPFIRIEVW  237 (277)
T ss_dssp             HHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHSSEEEEEEE
T ss_pred             HHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHHCCCceeEEE
Confidence            788888999999888765332  2456666664 588755543

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=97.16  E-value=0.0012  Score=52.09  Aligned_cols=87  Identities=17%  Similarity=0.146  Sum_probs=56.2

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccc-cccCCCccEEEEeecccCc---
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-KAVAPPFDYIIGTDVVYAE---   76 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~-~~~~~~~D~IlasDviY~~---   76 (140)
                      |+.|++|+..|. +..+..+++|++.|+..           ..  +.   .++.... +.....||+|+. |.-|..   
T Consensus       233 a~~ga~V~avDis~~al~~a~~n~~~ng~~-----------~~--~~---~~D~~~~l~~~~~~fD~Ii~-dpP~f~~~~  295 (393)
T 4dmg_A          233 ARKGAYALAVDKDLEALGVLDQAALRLGLR-----------VD--IR---HGEALPTLRGLEGPFHHVLL-DPPTLVKRP  295 (393)
T ss_dssp             HHTTCEEEEEESCHHHHHHHHHHHHHHTCC-----------CE--EE---ESCHHHHHHTCCCCEEEEEE-CCCCCCSSG
T ss_pred             HHcCCeEEEEECCHHHHHHHHHHHHHhCCC-----------Cc--EE---EccHHHHHHHhcCCCCEEEE-CCCcCCCCH
Confidence            557889999998 88999999999999752           22  22   2222111 111334999985 544422   


Q ss_pred             -------cchHHHHHHHHHhcCCCeEEEEEEEecCh
Q 032462           77 -------HLLEPLLQTIFALSGPKTTILLGYEIRST  105 (140)
Q Consensus        77 -------~~~~~L~~tl~~ll~~~~~~~~~~~~R~~  105 (140)
                             .....++..+..+++|+|.++++......
T Consensus       296 ~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~  331 (393)
T 4dmg_A          296 EELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHL  331 (393)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCC
Confidence                   12345666667788899998866655543

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=97.16  E-value=0.0016  Score=47.00  Aligned_cols=87  Identities=16%  Similarity=-0.067  Sum_probs=64.0

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc--cCCCccEEEEeecccCcc-
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA--VAPPFDYIIGTDVVYAEH-   77 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~--~~~~~D~IlasDviY~~~-   77 (140)
                      |..|.+|+..|. +.++...++|..               ..++.+...|..+.+....  ....||+|++..+++.-. 
T Consensus        75 a~~~~~v~gvD~s~~~~~~a~~~~~---------------~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~  139 (245)
T 3ggd_A           75 SQFFPRVIGLDVSKSALEIAAKENT---------------AANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPV  139 (245)
T ss_dssp             HHHSSCEEEEESCHHHHHHHHHHSC---------------CTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCG
T ss_pred             HHhCCCEEEEECCHHHHHHHHHhCc---------------ccCceEEECcccccccccccccccCccEEEEcchhhcCCH
Confidence            456779999998 778888887761               1356777777765432111  123599999999998866 


Q ss_pred             -chHHHHHHHHHhcCCCeEEEEEEEec
Q 032462           78 -LLEPLLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        78 -~~~~L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                       ....+++.+.++++|+|.+++.....
T Consensus       140 ~~~~~~l~~~~~~LkpgG~l~i~~~~~  166 (245)
T 3ggd_A          140 EKRELLGQSLRILLGKQGAMYLIELGT  166 (245)
T ss_dssp             GGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence             77899999999999999987776543

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=97.13  E-value=0.003  Score=46.81  Aligned_cols=85  Identities=13%  Similarity=0.169  Sum_probs=63.0

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchH
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLE   80 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~   80 (140)
                      .|++|+..|. +++++..+++++..+.           ..+|++..-|-.+.   +  ..+||+|++.-++..=  ....
T Consensus        95 ~~~~v~gvD~s~~ml~~A~~~~~~~~~-----------~~~v~~~~~D~~~~---~--~~~~d~v~~~~~l~~~~~~~~~  158 (261)
T 4gek_A           95 DNCKIIAIDNSPAMIERCRRHIDAYKA-----------PTPVDVIEGDIRDI---A--IENASMVVLNFTLQFLEPSERQ  158 (261)
T ss_dssp             SSCEEEEEESCHHHHHHHHHHHHTSCC-----------SSCEEEEESCTTTC---C--CCSEEEEEEESCGGGSCHHHHH
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHhhcc-----------CceEEEeecccccc---c--ccccccceeeeeeeecCchhHh
Confidence            4779999998 8899999999876543           34666665544332   2  3579999999887642  3445


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEecC
Q 032462           81 PLLQTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~R~  104 (140)
                      .+++-+.+.|+|+|.++++-..+.
T Consensus       159 ~~l~~i~~~LkpGG~lii~e~~~~  182 (261)
T 4gek_A          159 ALLDKIYQGLNPGGALVLSEKFSF  182 (261)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred             HHHHHHHHHcCCCcEEEEEeccCC
Confidence            788999999999999998876553

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=97.11  E-value=0.0047  Score=47.56  Aligned_cols=81  Identities=23%  Similarity=0.246  Sum_probs=61.9

Q ss_pred             CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHHH
Q 032462            5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~L   82 (140)
                      +.++++-|.|++++..++++....            ..+|++...|--+++     .+.+|+|+.+.++++-  +....+
T Consensus       203 ~~~~~~~dlp~v~~~a~~~~~~~~------------~~rv~~~~gD~~~~~-----~~~~D~~~~~~vlh~~~d~~~~~i  265 (353)
T 4a6d_A          203 GCKITVFDIPEVVWTAKQHFSFQE------------EEQIDFQEGDFFKDP-----LPEADLYILARVLHDWADGKCSHL  265 (353)
T ss_dssp             SCEEEEEECHHHHHHHHHHSCC--------------CCSEEEEESCTTTSC-----CCCCSEEEEESSGGGSCHHHHHHH
T ss_pred             CceeEeccCHHHHHHHHHhhhhcc------------cCceeeecCccccCC-----CCCceEEEeeeecccCCHHHHHHH
Confidence            458899999999998888775322            367899988876542     3468999999999863  355678


Q ss_pred             HHHHHHhcCCCeEEEEEEEe
Q 032462           83 LQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~  102 (140)
                      ++-+...++|+|+++|.-..
T Consensus       266 L~~~~~al~pgg~lli~e~~  285 (353)
T 4a6d_A          266 LERIYHTCKPGGGILVIESL  285 (353)
T ss_dssp             HHHHHHHCCTTCEEEEEECC
T ss_pred             HHHHHhhCCCCCEEEEEEee
Confidence            88888889999999987653

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=97.10  E-value=0.003  Score=46.58  Aligned_cols=123  Identities=11%  Similarity=0.057  Sum_probs=70.1

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhh--cccccCCCC---CCCCCceEEEEeecCCCccccccCCCccEEEEeeccc
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNT--SRISQMNPG---SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVY   74 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~--~~~~~~~~~---~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY   74 (140)
                      ||..|++|+..|. +..+...+++.....  ..+......   .....++.+..-|-.+.+.  ....+||+|+..-++.
T Consensus        86 La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~--~~~~~FD~V~~~~~l~  163 (252)
T 2gb4_A           86 FADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPR--ANIGKFDRIWDRGALV  163 (252)
T ss_dssp             HHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGG--GCCCCEEEEEESSSTT
T ss_pred             HHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCc--ccCCCEEEEEEhhhhh
Confidence            5678999999998 778888765432100  000000000   0012456666555443221  1126899999876654


Q ss_pred             C--ccchHHHHHHHHHhcCCCeEEE-EEEEecC-----h---hHHHHHHHHHHhcCeEEeec
Q 032462           75 A--EHLLEPLLQTIFALSGPKTTIL-LGYEIRS-----T---SVHEQMLQMWKSNFNVKLVP  125 (140)
Q Consensus        75 ~--~~~~~~L~~tl~~ll~~~~~~~-~~~~~R~-----~---~~~~~F~~~~~~~f~v~~v~  125 (140)
                      .  ++....+++.+.++++|+|.++ ++.....     +   -+.+...+.++.+|+++.+.
T Consensus       164 ~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~~f~v~~~~  225 (252)
T 2gb4_A          164 AINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGTKCSMQCLE  225 (252)
T ss_dssp             TSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTTTEEEEEEE
T ss_pred             hCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhCCeEEEEEe
Confidence            2  3456678899999999999986 4433211     0   11345555566578877654

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.09  E-value=0.0017  Score=46.80  Aligned_cols=103  Identities=13%  Similarity=0.066  Sum_probs=64.6

Q ss_pred             C-CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeecccCccchHH
Q 032462            5 G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHLLEP   81 (140)
Q Consensus         5 G-a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~~~D~IlasDviY~~~~~~~   81 (140)
                      | ++|+..|. +..+..+++|++.+              .++....-|..++.. .+ ....||+|+ .|+ -.+.....
T Consensus        97 ~~~~v~gvD~s~~~~~~a~~~~~~~--------------~~v~~~~~d~~~~~~~~~-~~~~~D~v~-~~~-~~~~~~~~  159 (230)
T 1fbn_A           97 DKGIVYAIEYAPRIMRELLDACAER--------------ENIIPILGDANKPQEYAN-IVEKVDVIY-EDV-AQPNQAEI  159 (230)
T ss_dssp             TTSEEEEEESCHHHHHHHHHHTTTC--------------TTEEEEECCTTCGGGGTT-TSCCEEEEE-ECC-CSTTHHHH
T ss_pred             CCcEEEEEECCHHHHHHHHHHhhcC--------------CCeEEEECCCCCcccccc-cCccEEEEE-Eec-CChhHHHH
Confidence            5 59999998 78899998886544              244555545544211 11 125799999 443 33445577


Q ss_pred             HHHHHHHhcCCCeEEEEEEEecChh----H---HHHHHHHH-HhcCeEEee
Q 032462           82 LLQTIFALSGPKTTILLGYEIRSTS----V---HEQMLQMW-KSNFNVKLV  124 (140)
Q Consensus        82 L~~tl~~ll~~~~~~~~~~~~R~~~----~---~~~F~~~~-~~~f~v~~v  124 (140)
                      +++.+.++++|+|.++++...+...    .   ...-++.+ +.||.+.++
T Consensus       160 ~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~~l~~~Gf~~~~~  210 (230)
T 1fbn_A          160 LIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDE  210 (230)
T ss_dssp             HHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred             HHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHHHHHHCCCEEEEE
Confidence            8899999999999999985433211    0   11223344 458986553

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.09  E-value=0.0053  Score=43.60  Aligned_cols=105  Identities=11%  Similarity=0.106  Sum_probs=69.1

Q ss_pred             EEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHHHHH
Q 032462            9 ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIF   87 (140)
Q Consensus         9 v~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~tl~   87 (140)
                      +..|. +..+..++.|   |                +.+...+..+.   +.....||+|++.++++.-.....+++.+.
T Consensus        69 ~~vD~s~~~~~~a~~~---~----------------~~~~~~d~~~~---~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~  126 (219)
T 1vlm_A           69 IGVEPSERMAEIARKR---G----------------VFVLKGTAENL---PLKDESFDFALMVTTICFVDDPERALKEAY  126 (219)
T ss_dssp             EEEESCHHHHHHHHHT---T----------------CEEEECBTTBC---CSCTTCEEEEEEESCGGGSSCHHHHHHHHH
T ss_pred             hccCCCHHHHHHHHhc---C----------------CEEEEcccccC---CCCCCCeeEEEEcchHhhccCHHHHHHHHH
Confidence            67787 6677777765   1                12333333221   122468999999999987766788999999


Q ss_pred             HhcCCCeEEEEEEEecChh---------------------HHHHHHHHH-HhcCeEEeecCCCCCcccCC
Q 032462           88 ALSGPKTTILLGYEIRSTS---------------------VHEQMLQMW-KSNFNVKLVPKAKESTMWGN  135 (140)
Q Consensus        88 ~ll~~~~~~~~~~~~R~~~---------------------~~~~F~~~~-~~~f~v~~v~~~~l~~~~~~  135 (140)
                      ++++|+|.+++....+...                     +.+.+.+.+ +.||++..+......+.|..
T Consensus       127 ~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~p~~~  196 (219)
T 1vlm_A          127 RILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLFKHPSEL  196 (219)
T ss_dssp             HHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEECCSCGGGC
T ss_pred             HHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecccCCCCCcc
Confidence            9999999999886654321                     134455556 45999877765555555443

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=97.08  E-value=0.0036  Score=46.49  Aligned_cols=91  Identities=13%  Similarity=0.098  Sum_probs=61.1

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      ++|+..|. ++.+..+++|++.|+.            .++.+..-|..+.   +. ..+||+|+.. ..+   ....++.
T Consensus       144 ~~V~~vD~s~~av~~a~~n~~~n~l------------~~~~~~~~d~~~~---~~-~~~~D~Vi~d-~p~---~~~~~l~  203 (272)
T 3a27_A          144 KLVYAIEKNPTAYHYLCENIKLNKL------------NNVIPILADNRDV---EL-KDVADRVIMG-YVH---KTHKFLD  203 (272)
T ss_dssp             SEEEEEECCHHHHHHHHHHHHHTTC------------SSEEEEESCGGGC---CC-TTCEEEEEEC-CCS---SGGGGHH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCC------------CCEEEEECChHHc---Cc-cCCceEEEEC-Ccc---cHHHHHH
Confidence            39999998 8899999999999974            2345544444332   11 4579999764 333   4556677


Q ss_pred             HHHHhcCCCeEEEEEEEecCh---hHHHHHHHHHH
Q 032462           85 TIFALSGPKTTILLGYEIRST---SVHEQMLQMWK  116 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R~~---~~~~~F~~~~~  116 (140)
                      .+...++|+|.++++......   +......+.++
T Consensus       204 ~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~  238 (272)
T 3a27_A          204 KTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYA  238 (272)
T ss_dssp             HHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHH
T ss_pred             HHHHHcCCCCEEEEEEcCccccccccHHHHHHHHH
Confidence            777788899999877666532   23445555553

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=97.08  E-value=0.00043  Score=51.94  Aligned_cols=96  Identities=14%  Similarity=0.259  Sum_probs=62.7

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccC----------------------------------C----C--------C
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQM----------------------------------N----P--------G   37 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~----------------------------------~----~--------~   37 (140)
                      +++|+.+|. +.++...++|+..+.......                                  .    |        .
T Consensus        70 ~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~  149 (292)
T 3g07_A           70 PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADT  149 (292)
T ss_dssp             CSEEEEEESCHHHHHHHHHTC---------------------------------------------------CCSSTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccccchhhhccCcccccccccccccc
Confidence            469999998 789999999987654220000                                  0    0        0


Q ss_pred             CCCCCceEEEEeecCCCcc--ccccCCCccEEEEeecc-c-----CccchHHHHHHHHHhcCCCeEEEEEE
Q 032462           38 SDLLGSIQAVELDWGNEDH--IKAVAPPFDYIIGTDVV-Y-----AEHLLEPLLQTIFALSGPKTTILLGY  100 (140)
Q Consensus        38 ~~~~~~v~~~~LdWg~~~~--~~~~~~~~D~IlasDvi-Y-----~~~~~~~L~~tl~~ll~~~~~~~~~~  100 (140)
                      ..-..+|.+...||.....  .+.....||+|++..++ |     ..+....+++-+.++|+|+|.+++..
T Consensus       150 ~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          150 SVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEP  220 (292)
T ss_dssp             SSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            0011478999999976541  11235789999999987 2     33466778888889999999998853

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.05  E-value=0.00086  Score=48.55  Aligned_cols=108  Identities=12%  Similarity=0.010  Sum_probs=70.4

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-cc-----------cc-C-CCccEEEE
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IK-----------AV-A-PPFDYIIG   69 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~-----------~~-~-~~~D~Ila   69 (140)
                      |++|+..|. +..+...++|++.++.           ..++.+..-+..+... ..           .. . .+||+|+.
T Consensus        85 ~~~v~~vD~~~~~~~~a~~~~~~~g~-----------~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~  153 (239)
T 2hnk_A           85 DGKILCCDVSEEWTNVARKYWKENGL-----------ENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFL  153 (239)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEE
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCC-----------CCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEE
Confidence            569999998 8899999999987653           1345555544322100 00           00 1 68999987


Q ss_pred             eecccCccchHHHHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHHH--hcCeEEeecC
Q 032462           70 TDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWK--SNFNVKLVPK  126 (140)
Q Consensus        70 sDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~------------~~~~~F~~~~~--~~f~v~~v~~  126 (140)
                      .   +.....+.++..+..+++|+|.+++.......            .....|.+.+.  ..|.+..+|.
T Consensus       154 ~---~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  221 (239)
T 2hnk_A          154 D---ADKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPI  221 (239)
T ss_dssp             C---SCGGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred             e---CCHHHHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEEc
Confidence            5   34456678888888999999999886532211            12467777763  3677777765

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=97.03  E-value=0.0036  Score=46.13  Aligned_cols=80  Identities=14%  Similarity=0.136  Sum_probs=59.6

Q ss_pred             cCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHH
Q 032462            3 LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEP   81 (140)
Q Consensus         3 ~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~   81 (140)
                      ..|++|+.+|. +..+..++++.                 .++.+...|..+.+   . ...||+|+++.++..-...+.
T Consensus        77 ~~~~~v~gvD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~~---~-~~~fD~v~~~~~l~~~~d~~~  135 (279)
T 3ccf_A           77 QSGAEVLGTDNAATMIEKARQNY-----------------PHLHFDVADARNFR---V-DKPLDAVFSNAMLHWVKEPEA  135 (279)
T ss_dssp             HTTCEEEEEESCHHHHHHHHHHC-----------------TTSCEEECCTTTCC---C-SSCEEEEEEESCGGGCSCHHH
T ss_pred             hCCCeEEEEECCHHHHHHHHhhC-----------------CCCEEEECChhhCC---c-CCCcCEEEEcchhhhCcCHHH
Confidence            45789999998 77888887764                 12344444544322   1 468999999999987666778


Q ss_pred             HHHHHHHhcCCCeEEEEEEEec
Q 032462           82 LLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        82 L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      +++.+.++++|+|.+++....+
T Consensus       136 ~l~~~~~~LkpgG~l~~~~~~~  157 (279)
T 3ccf_A          136 AIASIHQALKSGGRFVAEFGGK  157 (279)
T ss_dssp             HHHHHHHHEEEEEEEEEEEECT
T ss_pred             HHHHHHHhcCCCcEEEEEecCC
Confidence            8999999999999998876654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=96.99  E-value=0.0014  Score=46.12  Aligned_cols=80  Identities=15%  Similarity=0.022  Sum_probs=58.9

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      |+.|++|+..|. +..+..+++|+..+..            .++++..-|+.+...   ...+||+|++..++..-    
T Consensus        96 a~~~~~v~~vD~~~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~~---~~~~~D~i~~~~~~~~~----  156 (210)
T 3lbf_A           96 AHLVQHVCSVERIKGLQWQARRRLKNLDL------------HNVSTRHGDGWQGWQ---ARAPFDAIIVTAAPPEI----  156 (210)
T ss_dssp             HHHSSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEESCGGGCCG---GGCCEEEEEESSBCSSC----
T ss_pred             HHhCCEEEEEecCHHHHHHHHHHHHHcCC------------CceEEEECCcccCCc---cCCCccEEEEccchhhh----
Confidence            455789999998 8899999999988753            357777777655321   24689999998766432    


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEe
Q 032462           81 PLLQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~  102 (140)
                        ...+..+++|+|.+++....
T Consensus       157 --~~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          157 --PTALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             --CTHHHHTEEEEEEEEEEECS
T ss_pred             --hHHHHHhcccCcEEEEEEcC
Confidence              12467788999999887765

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=96.98  E-value=0.0022  Score=48.11  Aligned_cols=83  Identities=14%  Similarity=0.199  Sum_probs=60.7

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCc---cEEEEe----------
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF---DYIIGT----------   70 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~---D~Ilas----------   70 (140)
                      +++|+.+|. ++.+...++|+..|+.           .+++++..-||.+..  +   .+|   |+|++.          
T Consensus       146 ~~~v~~vDis~~al~~A~~n~~~~~l-----------~~~v~~~~~D~~~~~--~---~~f~~~D~IvsnPPyi~~~~~l  209 (284)
T 1nv8_A          146 DAIVFATDVSSKAVEIARKNAERHGV-----------SDRFFVRKGEFLEPF--K---EKFASIEMILSNPPYVKSSAHL  209 (284)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHHHTTC-----------TTSEEEEESSTTGGG--G---GGTTTCCEEEECCCCBCGGGSC
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCC-----------CCceEEEECcchhhc--c---cccCCCCEEEEcCCCCCccccc
Confidence            679999998 8899999999999864           246888888887642  1   357   999984          


Q ss_pred             --ecccCccch-------HHHHHHHH-HhcCCCeEEEEEEEec
Q 032462           71 --DVVYAEHLL-------EPLLQTIF-ALSGPKTTILLGYEIR  103 (140)
Q Consensus        71 --DviY~~~~~-------~~L~~tl~-~ll~~~~~~~~~~~~R  103 (140)
                        ++.|.+...       ..+++.+. ..++|+|.+++.....
T Consensus       210 ~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~  252 (284)
T 1nv8_A          210 PKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED  252 (284)
T ss_dssp             TTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT
T ss_pred             ChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence              444444321       15677777 8888999998865443

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=96.98  E-value=0.013  Score=43.04  Aligned_cols=107  Identities=13%  Similarity=0.081  Sum_probs=69.8

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      .+|+..|. ++.+..+++|.+.              .+++....-+=+.+...+.....+|+|+ +|+. .+.....++.
T Consensus       103 G~V~avD~s~~~~~~l~~~a~~--------------~~ni~~V~~d~~~p~~~~~~~~~vDvVf-~d~~-~~~~~~~~l~  166 (233)
T 4df3_A          103 GRIYGVEFAPRVMRDLLTVVRD--------------RRNIFPILGDARFPEKYRHLVEGVDGLY-ADVA-QPEQAAIVVR  166 (233)
T ss_dssp             CEEEEEECCHHHHHHHHHHSTT--------------CTTEEEEESCTTCGGGGTTTCCCEEEEE-ECCC-CTTHHHHHHH
T ss_pred             ceEEEEeCCHHHHHHHHHhhHh--------------hcCeeEEEEeccCccccccccceEEEEE-Eecc-CChhHHHHHH
Confidence            48999997 8888888776532              2345555555555544444457789887 4654 4455566778


Q ss_pred             HHHHhcCCCeEEEEEEEecChh-------HHHHHHHHH-HhcCeEE-eecCCC
Q 032462           85 TIFALSGPKTTILLGYEIRSTS-------VHEQMLQMW-KSNFNVK-LVPKAK  128 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R~~~-------~~~~F~~~~-~~~f~v~-~v~~~~  128 (140)
                      -+..+|+|+|.++++.+.|...       .+.+-.+.+ +.||++. .+..+-
T Consensus       167 ~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i~L~p  219 (233)
T 4df3_A          167 NARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHLDP  219 (233)
T ss_dssp             HHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             HHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEEccCC
Confidence            8888999999999998877642       233334455 4699854 444433

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=96.98  E-value=0.0037  Score=43.91  Aligned_cols=81  Identities=11%  Similarity=0.006  Sum_probs=60.3

Q ss_pred             CC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462            5 GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL   82 (140)
Q Consensus         5 Ga-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L   82 (140)
                      |+ +|+..|. +..+..+++|. .                ++.+...+..+.   +.....||+|++..++..-.....+
T Consensus        55 ~~~~v~~vD~s~~~~~~a~~~~-~----------------~~~~~~~d~~~~---~~~~~~fD~v~~~~~l~~~~~~~~~  114 (211)
T 2gs9_A           55 PYPQKVGVEPSEAMLAVGRRRA-P----------------EATWVRAWGEAL---PFPGESFDVVLLFTTLEFVEDVERV  114 (211)
T ss_dssp             CCSEEEEECCCHHHHHHHHHHC-T----------------TSEEECCCTTSC---CSCSSCEEEEEEESCTTTCSCHHHH
T ss_pred             CCCeEEEEeCCHHHHHHHHHhC-C----------------CcEEEEcccccC---CCCCCcEEEEEEcChhhhcCCHHHH
Confidence            66 9999998 77888888776 1                123333333322   2224689999999999887777889


Q ss_pred             HHHHHHhcCCCeEEEEEEEecCh
Q 032462           83 LQTIFALSGPKTTILLGYEIRST  105 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~R~~  105 (140)
                      ++.+.++++|+|.+++....+..
T Consensus       115 l~~~~~~L~pgG~l~i~~~~~~~  137 (211)
T 2gs9_A          115 LLEARRVLRPGGALVVGVLEALS  137 (211)
T ss_dssp             HHHHHHHEEEEEEEEEEEECTTS
T ss_pred             HHHHHHHcCCCCEEEEEecCCcC
Confidence            99999999999999998876653

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=96.96  E-value=0.0012  Score=50.75  Aligned_cols=83  Identities=12%  Similarity=0.073  Sum_probs=59.1

Q ss_pred             ccCCC-EEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--ccc
Q 032462            2 ALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHL   78 (140)
Q Consensus         2 A~lGa-~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--~~~   78 (140)
                      |+.|+ +|+..|..+.+..+++|++.|+.           ..++++..-++.+.+    ...+||+|+...+.|.  .+.
T Consensus        69 a~~g~~~V~~vD~s~~~~~a~~~~~~~~l-----------~~~v~~~~~d~~~~~----~~~~~D~Ivs~~~~~~~~~~~  133 (348)
T 2y1w_A           69 AQAGARKIYAVEASTMAQHAEVLVKSNNL-----------TDRIVVIPGKVEEVS----LPEQVDIIISEPMGYMLFNER  133 (348)
T ss_dssp             HHTTCSEEEEEECSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTCC----CSSCEEEEEECCCBTTBTTTS
T ss_pred             HhCCCCEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcchhhCC----CCCceeEEEEeCchhcCChHH
Confidence            45676 99999986678899999998864           256788777776542    1357999998877663  233


Q ss_pred             hHHHHHHHHHhcCCCeEEEEE
Q 032462           79 LEPLLQTIFALSGPKTTILLG   99 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~   99 (140)
                      ....+..+.++++|+|.+++.
T Consensus       134 ~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          134 MLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             HHHHHHHGGGGEEEEEEEESC
T ss_pred             HHHHHHHHHhhcCCCeEEEEe
Confidence            334444566788999998754

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=96.93  E-value=0.0029  Score=46.83  Aligned_cols=102  Identities=11%  Similarity=-0.024  Sum_probs=65.1

Q ss_pred             CccCC-C-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc
Q 032462            1 MALLG-C-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH   77 (140)
Q Consensus         1 lA~lG-a-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~   77 (140)
                      ||+.| + +|+++|. +..+...++|++.|+.           ...+.+..-|+-+...   ...+||+|+-+=.--  +
T Consensus        39 la~~~~~~~V~avDi~~~al~~A~~N~~~~gl-----------~~~I~v~~gD~l~~~~---~~~~~D~IviagmGg--~  102 (244)
T 3gnl_A           39 AVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL-----------TEQIDVRKGNGLAVIE---KKDAIDTIVIAGMGG--T  102 (244)
T ss_dssp             HHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC-----------TTTEEEEECSGGGGCC---GGGCCCEEEEEEECH--H
T ss_pred             HHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CceEEEEecchhhccC---ccccccEEEEeCCch--H
Confidence            35666 3 8999998 7899999999999985           3568887777655421   123699887542222  3


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCeE
Q 032462           78 LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV  121 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~v  121 (140)
                      .+..++......+.+.+.++++-. ........++.  +.||.+
T Consensus       103 lI~~IL~~~~~~L~~~~~lIlq~~-~~~~~lr~~L~--~~Gf~i  143 (244)
T 3gnl_A          103 LIRTILEEGAAKLAGVTKLILQPN-IAAWQLREWSE--QNNWLI  143 (244)
T ss_dssp             HHHHHHHHTGGGGTTCCEEEEEES-SCHHHHHHHHH--HHTEEE
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEcC-CChHHHHHHHH--HCCCEE
Confidence            445666666666677777766654 33322333332  457875

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=96.92  E-value=0.0048  Score=46.64  Aligned_cols=108  Identities=15%  Similarity=0.035  Sum_probs=68.5

Q ss_pred             CEEEEecc-hhHHHHHHHHHHH-hhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc----c-
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH----L-   78 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~-N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~----~-   78 (140)
                      .+|++.|. +.++...++|+.. +.. .        ...++++..-|..+... .....+||+|+. |..+...    + 
T Consensus       120 ~~v~~vDid~~~i~~a~~~~~~~~~~-~--------~~~~v~~~~~D~~~~~~-~~~~~~fDvIi~-d~~~~~~~~~~l~  188 (304)
T 3bwc_A          120 EHCDLVDIDGEVMEQSKQHFPQISRS-L--------ADPRATVRVGDGLAFVR-QTPDNTYDVVII-DTTDPAGPASKLF  188 (304)
T ss_dssp             CEEEEEESCHHHHHHHHHHCHHHHGG-G--------GCTTEEEEESCHHHHHH-SSCTTCEEEEEE-ECC---------C
T ss_pred             CEEEEEECCHHHHHHHHHHhHHhhcc-c--------CCCcEEEEECcHHHHHH-hccCCceeEEEE-CCCCccccchhhh
Confidence            59999998 7899999998753 222 1        13567777666543211 002568999997 5443211    1 


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEec--ChhHHHHHHHHHH-hcCeEEee
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWK-SNFNVKLV  124 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~R--~~~~~~~F~~~~~-~~f~v~~v  124 (140)
                      -..+++.+.+.|+|+|.+++.....  .......+.+.++ .||...++
T Consensus       189 ~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~  237 (304)
T 3bwc_A          189 GEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQY  237 (304)
T ss_dssp             CHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEE
Confidence            1577888899999999998875543  2234566777775 47975543

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=96.82  E-value=0.0067  Score=46.05  Aligned_cols=103  Identities=13%  Similarity=-0.002  Sum_probs=63.5

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeeccc------C--
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVY------A--   75 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY------~--   75 (140)
                      +++|+..|. +..+..+++|++.++.            .++.+..-|..+..   .....||+|+. |.-+      .  
T Consensus       143 ~~~v~avD~s~~~l~~a~~~~~~~g~------------~~v~~~~~D~~~~~---~~~~~fD~Il~-d~Pcsg~g~~~~~  206 (315)
T 1ixk_A          143 DGVIYAFDVDENRLRETRLNLSRLGV------------LNVILFHSSSLHIG---ELNVEFDKILL-DAPCTGSGTIHKN  206 (315)
T ss_dssp             CSEEEEECSCHHHHHHHHHHHHHHTC------------CSEEEESSCGGGGG---GGCCCEEEEEE-ECCTTSTTTCC--
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHHhCC------------CeEEEEECChhhcc---cccccCCEEEE-eCCCCCcccccCC
Confidence            369999998 7899999999998864            24555554443322   12457999986 2211      1  


Q ss_pred             c--------c-------chHHHHHHHHHhcCCCeEEEEEEEecC----hhHHHHHHHHHHhcCeEEeec
Q 032462           76 E--------H-------LLEPLLQTIFALSGPKTTILLGYEIRS----TSVHEQMLQMWKSNFNVKLVP  125 (140)
Q Consensus        76 ~--------~-------~~~~L~~tl~~ll~~~~~~~~~~~~R~----~~~~~~F~~~~~~~f~v~~v~  125 (140)
                      +        +       ....+++.+.++++|+|.++++.-.-.    ..+...|++.  .+|++..++
T Consensus       207 p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~--~~~~~~~~~  273 (315)
T 1ixk_A          207 PERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDN--FDVELLPLK  273 (315)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHH--SSEEEECCC
T ss_pred             hhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhc--CCCEEecCC
Confidence            1        0       114677777788899999877543222    2234455543  467666554

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=96.81  E-value=0.0035  Score=47.88  Aligned_cols=106  Identities=15%  Similarity=0.077  Sum_probs=68.8

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecc--cCc--cch
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV--YAE--HLL   79 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDvi--Y~~--~~~   79 (140)
                      +.+|++.|. +++++..++|+.......        ...++++..-|+.+..  +....+||+|+. |..  +.+  .+.
T Consensus       140 ~~~v~~vDis~~~l~~ar~~~~~~~~~~--------~~~~v~~~~~D~~~~l--~~~~~~fDvIi~-d~~~p~~~~~~l~  208 (321)
T 2pt6_A          140 VENIDICEIDETVIEVSKIYFKNISCGY--------EDKRVNVFIEDASKFL--ENVTNTYDVIIV-DSSDPIGPAETLF  208 (321)
T ss_dssp             CCEEEEEESCHHHHHHHHHHCTTTSGGG--------GSTTEEEEESCHHHHH--HHCCSCEEEEEE-ECCCSSSGGGGGS
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhhcccc--------CCCcEEEEEccHHHHH--hhcCCCceEEEE-CCcCCCCcchhhh
Confidence            359999998 889999999987631111        1256777766654321  122468999996 442  111  122


Q ss_pred             -HHHHHHHHHhcCCCeEEEEEEEec--ChhHHHHHHHHHHhcCeE
Q 032462           80 -EPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFNV  121 (140)
Q Consensus        80 -~~L~~tl~~ll~~~~~~~~~~~~R--~~~~~~~F~~~~~~~f~v  121 (140)
                       ..+++.+.+.++|+|.+++.....  ..+....+.+.+++.|..
T Consensus       209 ~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~  253 (321)
T 2pt6_A          209 NQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKK  253 (321)
T ss_dssp             SHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCC
Confidence             688888999999999998865443  233456677777766653

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=96.81  E-value=0.0032  Score=48.18  Aligned_cols=78  Identities=15%  Similarity=0.124  Sum_probs=54.4

Q ss_pred             CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc--chHHH
Q 032462            5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--LLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~--~~~~L   82 (140)
                      +.+++..|.+.++.  +.++....           ...++++...|..++  .   . .||+|+.+.++++-.  ....+
T Consensus       208 ~~~~~~~D~~~~~~--~~~~~~~~-----------~~~~v~~~~~d~~~~--~---p-~~D~v~~~~vlh~~~d~~~~~~  268 (348)
T 3lst_A          208 GLQGVLLDRAEVVA--RHRLDAPD-----------VAGRWKVVEGDFLRE--V---P-HADVHVLKRILHNWGDEDSVRI  268 (348)
T ss_dssp             TEEEEEEECHHHHT--TCCCCCGG-----------GTTSEEEEECCTTTC--C---C-CCSEEEEESCGGGSCHHHHHHH
T ss_pred             CCEEEEecCHHHhh--cccccccC-----------CCCCeEEEecCCCCC--C---C-CCcEEEEehhccCCCHHHHHHH
Confidence            34788888876654  22222111           135688888887632  2   2 899999999997543  33688


Q ss_pred             HHHHHHhcCCCeEEEEEEE
Q 032462           83 LQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~  101 (140)
                      ++-+.+.++|+|.+++...
T Consensus       269 L~~~~~~LkpgG~l~i~e~  287 (348)
T 3lst_A          269 LTNCRRVMPAHGRVLVIDA  287 (348)
T ss_dssp             HHHHHHTCCTTCEEEEEEC
T ss_pred             HHHHHHhcCCCCEEEEEEe
Confidence            8889999999999988764

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=96.80  E-value=0.0081  Score=45.04  Aligned_cols=94  Identities=14%  Similarity=0.003  Sum_probs=64.1

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCc---cccccCCCccEEEEeecccCc----
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HIKAVAPPFDYIIGTDVVYAE----   76 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~---~~~~~~~~~D~IlasDviY~~----   76 (140)
                      +++|+.+|. +..+...+++...+.....     .....++.+...|..+.+   .++.....||+|+++.++..-    
T Consensus        57 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~  131 (313)
T 3bgv_A           57 INKLVCTDIADVSVKQCQQRYEDMKNRRD-----SEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESY  131 (313)
T ss_dssp             CSEEEEEESCHHHHHHHHHHHHHHHSSSC-----C-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHhhhccc-----ccccceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCH
Confidence            459999998 7899999998876542100     001246777777776543   121123489999999988442    


Q ss_pred             cchHHHHHHHHHhcCCCeEEEEEEEec
Q 032462           77 HLLEPLLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        77 ~~~~~L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      .....+++.+.++++|+|.++++....
T Consensus       132 ~~~~~~l~~~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A          132 EQADMMLRNACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             HHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             HHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence            345678888888899999998876643

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=96.80  E-value=0.014  Score=41.49  Aligned_cols=107  Identities=11%  Similarity=0.093  Sum_probs=67.8

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecc-cCcc-----
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV-YAEH-----   77 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDvi-Y~~~-----   77 (140)
                      +++|+..|. +..+...++|++.++.            .++.+..-|..+.... .....||.|+..-.- |...     
T Consensus        62 ~~~v~giD~s~~~l~~a~~~~~~~~~------------~nv~~~~~d~~~l~~~-~~~~~~d~v~~~~~~p~~~~~~~~~  128 (213)
T 2fca_A           62 DINYIGIELFKSVIVTAVQKVKDSEA------------QNVKLLNIDADTLTDV-FEPGEVKRVYLNFSDPWPKKRHEKR  128 (213)
T ss_dssp             TSEEEEECSCHHHHHHHHHHHHHSCC------------SSEEEECCCGGGHHHH-CCTTSCCEEEEESCCCCCSGGGGGG
T ss_pred             CCCEEEEEechHHHHHHHHHHHHcCC------------CCEEEEeCCHHHHHhh-cCcCCcCEEEEECCCCCcCcccccc
Confidence            679999998 8899999999987653            3466666555432110 124568988753111 1111     


Q ss_pred             --chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecC
Q 032462           78 --LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK  126 (140)
Q Consensus        78 --~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~  126 (140)
                        ..+.+++.+..+++|+|.+++.......  .....+.+ +.+|....+..
T Consensus       129 rl~~~~~l~~~~~~LkpgG~l~~~td~~~~--~~~~~~~~~~~g~~~~~~~~  178 (213)
T 2fca_A          129 RLTYSHFLKKYEEVMGKGGSIHFKTDNRGL--FEYSLKSFSEYGLLLTYVSL  178 (213)
T ss_dssp             STTSHHHHHHHHHHHTTSCEEEEEESCHHH--HHHHHHHHHHHTCEEEEEES
T ss_pred             ccCcHHHHHHHHHHcCCCCEEEEEeCCHHH--HHHHHHHHHHCCCccccccc
Confidence              1467899999999999999988644321  22334445 45887665543

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=96.78  E-value=6.1e-05  Score=53.01  Aligned_cols=102  Identities=12%  Similarity=0.117  Sum_probs=45.9

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc---cCCCccEEEEeecccCccc--
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA---VAPPFDYIIGTDVVYAEHL--   78 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~---~~~~~D~IlasDviY~~~~--   78 (140)
                      +++|+..|. +..+..+++|+..|..             ++++..-|+.+.  .+.   ...+||+|++.-..+....  
T Consensus        54 ~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~--~~~~~~~~~~fD~i~~npp~~~~~~~~  118 (215)
T 4dzr_A           54 GVSVTAVDLSMDALAVARRNAERFGA-------------VVDWAAADGIEW--LIERAERGRPWHAIVSNPPYIPTGEID  118 (215)
T ss_dssp             TEEEEEEECC--------------------------------CCHHHHHHH--HHHHHHTTCCBSEEEECCCCCC-----
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHhCC-------------ceEEEEcchHhh--hhhhhhccCcccEEEECCCCCCCcccc
Confidence            559999998 7899999999987642             333444444331  111   2378999997433222111  


Q ss_pred             ------------------------hHHHHHHHHHhcCCCeE-EEEEEEecChhHHHHHHHHHHhcCeE
Q 032462           79 ------------------------LEPLLQTIFALSGPKTT-ILLGYEIRSTSVHEQMLQMWKSNFNV  121 (140)
Q Consensus        79 ------------------------~~~L~~tl~~ll~~~~~-~~~~~~~R~~~~~~~F~~~~~~~f~v  121 (140)
                                              ...+++.+.++++|+|. +++............+++.++.+|..
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~  186 (215)
T 4dzr_A          119 QLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVARLFAPWRERGFR  186 (215)
T ss_dssp             -------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHHHTGGGGGGTEE
T ss_pred             ccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHHHHHHhhcCCce
Confidence                                    15566666678899999 66655544433333444433457753

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=96.75  E-value=0.0065  Score=45.28  Aligned_cols=108  Identities=10%  Similarity=-0.019  Sum_probs=68.1

Q ss_pred             C-CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc-----
Q 032462            5 G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----   77 (140)
Q Consensus         5 G-a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~-----   77 (140)
                      | .+|++-|. +.+++.+++|+.......        ..+++++..-|--+.  .+....+||+|+. |..+...     
T Consensus        98 ~~~~v~~vEid~~~v~~ar~~~~~~~~~~--------~~~rv~v~~~D~~~~--l~~~~~~fD~Ii~-d~~~~~~~~~~l  166 (275)
T 1iy9_A           98 SVKKATLVDIDGKVIEYSKKFLPSIAGKL--------DDPRVDVQVDDGFMH--IAKSENQYDVIMV-DSTEPVGPAVNL  166 (275)
T ss_dssp             TCSEEEEEESCHHHHHHHHHHCHHHHTTT--------TSTTEEEEESCSHHH--HHTCCSCEEEEEE-SCSSCCSCCCCC
T ss_pred             CCceEEEEECCHHHHHHHHHHhHhhcccc--------CCCceEEEECcHHHH--HhhCCCCeeEEEE-CCCCCCCcchhh
Confidence            5 49999998 889999999986532111        134566655442211  1122468999997 7655211     


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEEEe--cChhHHHHHHHHHHhcCeEEe
Q 032462           78 LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFNVKL  123 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~~~--R~~~~~~~F~~~~~~~f~v~~  123 (140)
                      ....+++.+.+.|+|+|.+++....  ..........+.+++.|....
T Consensus       167 ~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~v~  214 (275)
T 1iy9_A          167 FTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITK  214 (275)
T ss_dssp             STTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEE
T ss_pred             hHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCCeE
Confidence            1357888999999999998776433  223335556666776776433

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=96.74  E-value=0.0049  Score=46.10  Aligned_cols=106  Identities=15%  Similarity=0.117  Sum_probs=67.9

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEE--eecccCcc-ch-H
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIG--TDVVYAEH-LL-E   80 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ila--sDviY~~~-~~-~   80 (140)
                      .+|++.|. +.+++..++|+..+....        ..+++++..-|..+.  .+....+||+|+.  +|.+.... +. .
T Consensus       103 ~~v~~vDid~~~i~~a~~~~~~~~~~~--------~~~~v~~~~~D~~~~--l~~~~~~fD~Ii~d~~~~~~~~~~l~~~  172 (283)
T 2i7c_A          103 ENIDICEIDETVIEVSKIYFKNISCGY--------EDKRVNVFIEDASKF--LENVTNTYDVIIVDSSDPIGPAETLFNQ  172 (283)
T ss_dssp             CEEEEEESCHHHHHHHHHHCTTTSGGG--------GSTTEEEEESCHHHH--HHHCCSCEEEEEEECCCTTTGGGGGSSH
T ss_pred             CEEEEEECCHHHHHHHHHHhHHhcccc--------CCCcEEEEECChHHH--HHhCCCCceEEEEcCCCCCCcchhhhHH
Confidence            59999998 889999999886543221        135666665554322  1122568999997  33222122 11 6


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEec--ChhHHHHHHHHHHhcCeE
Q 032462           81 PLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFNV  121 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~R--~~~~~~~F~~~~~~~f~v  121 (140)
                      .+++.+.++++|+|.+++.....  .......+.+.+++.|..
T Consensus       173 ~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~  215 (283)
T 2i7c_A          173 NFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKK  215 (283)
T ss_dssp             HHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCc
Confidence            88889999999999998765432  233456667777777763

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=96.72  E-value=0.017  Score=45.85  Aligned_cols=80  Identities=23%  Similarity=0.199  Sum_probs=56.6

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      ||+.|++|+..|. ++.+...++|++.|+.            . +++..-|..+..     ..+||+|+. |.-|. ...
T Consensus       308 la~~~~~V~gvD~s~~ai~~A~~n~~~ngl------------~-v~~~~~d~~~~~-----~~~fD~Vv~-dPPr~-g~~  367 (425)
T 2jjq_A          308 LAKRGFNVKGFDSNEFAIEMARRNVEINNV------------D-AEFEVASDREVS-----VKGFDTVIV-DPPRA-GLH  367 (425)
T ss_dssp             HHHTTCEEEEEESCHHHHHHHHHHHHHHTC------------C-EEEEECCTTTCC-----CTTCSEEEE-CCCTT-CSC
T ss_pred             HHHcCCEEEEEECCHHHHHHHHHHHHHcCC------------c-EEEEECChHHcC-----ccCCCEEEE-cCCcc-chH
Confidence            3556779999998 8899999999999864            2 566666655432     127999987 44332 234


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEE
Q 032462           80 EPLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      +.+++.+.. ++|++.+|++..
T Consensus       368 ~~~~~~l~~-l~p~givyvsc~  388 (425)
T 2jjq_A          368 PRLVKRLNR-EKPGVIVYVSCN  388 (425)
T ss_dssp             HHHHHHHHH-HCCSEEEEEESC
T ss_pred             HHHHHHHHh-cCCCcEEEEECC
Confidence            457777764 689999999863

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=96.70  E-value=0.0013  Score=46.15  Aligned_cols=85  Identities=16%  Similarity=0.178  Sum_probs=59.0

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC----
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA----   75 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~----   75 (140)
                      +..|. +|+..|. +..+..+++|+..              ..++.+...|..+.+   .....||+|++..++..    
T Consensus        61 ~~~~~~~v~~~D~s~~~~~~a~~~~~~--------------~~~i~~~~~d~~~~~---~~~~~fD~v~~~~~~~~~~~~  123 (215)
T 2pxx_A           61 FLGGFPNVTSVDYSSVVVAAMQACYAH--------------VPQLRWETMDVRKLD---FPSASFDVVLEKGTLDALLAG  123 (215)
T ss_dssp             HHTTCCCEEEEESCHHHHHHHHHHTTT--------------CTTCEEEECCTTSCC---SCSSCEEEEEEESHHHHHTTT
T ss_pred             HHcCCCcEEEEeCCHHHHHHHHHhccc--------------CCCcEEEEcchhcCC---CCCCcccEEEECcchhhhccc
Confidence            44576 8999998 7889999888642              135566666665432   22468999998776632    


Q ss_pred             -----------ccchHHHHHHHHHhcCCCeEEEEEEEec
Q 032462           76 -----------EHLLEPLLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        76 -----------~~~~~~L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                                 ......+++.+.++++|+|.+++....+
T Consensus       124 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          124 ERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             CSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             cccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence                       1244677888888899999998876544

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=96.69  E-value=0.0027  Score=45.59  Aligned_cols=79  Identities=11%  Similarity=0.075  Sum_probs=57.3

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccccc--CCCccEEEEeecccCccchHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV--APPFDYIIGTDVVYAEHLLEP   81 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~--~~~~D~IlasDviY~~~~~~~   81 (140)
                      |++|+..|. +..+..+++|+..++.           ..++.+..-+..+..  +..  ..+||+|+..-.   ......
T Consensus        78 ~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~--~~~~~~~~fD~I~~~~~---~~~~~~  141 (233)
T 2gpy_A           78 EATIVSIERDERRYEEAHKHVKALGL-----------ESRIELLFGDALQLG--EKLELYPLFDVLFIDAA---KGQYRR  141 (233)
T ss_dssp             TCEEEEECCCHHHHHHHHHHHHHTTC-----------TTTEEEECSCGGGSH--HHHTTSCCEEEEEEEGG---GSCHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECCHHHHH--HhcccCCCccEEEECCC---HHHHHH
Confidence            579999998 8899999999988753           245666665554321  122  468999997443   235677


Q ss_pred             HHHHHHHhcCCCeEEEEE
Q 032462           82 LLQTIFALSGPKTTILLG   99 (140)
Q Consensus        82 L~~tl~~ll~~~~~~~~~   99 (140)
                      +++.+..+++|+|.+++.
T Consensus       142 ~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          142 FFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             HHHHHGGGEEEEEEEEEE
T ss_pred             HHHHHHHHcCCCeEEEEE
Confidence            888888889999998885

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=96.68  E-value=0.0054  Score=44.82  Aligned_cols=78  Identities=17%  Similarity=-0.018  Sum_probs=54.9

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      |..|++|+.+|. +..+...+.+                  .++.+..-|+.+.+   .....||+|++..++..-...+
T Consensus        53 ~~~~~~v~gvD~s~~~~~~a~~~------------------~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~  111 (261)
T 3ege_A           53 ANQGLFVYAVEPSIVMRQQAVVH------------------PQVEWFTGYAENLA---LPDKSVDGVISILAIHHFSHLE  111 (261)
T ss_dssp             HTTTCEEEEECSCHHHHHSSCCC------------------TTEEEECCCTTSCC---SCTTCBSEEEEESCGGGCSSHH
T ss_pred             HhCCCEEEEEeCCHHHHHHHHhc------------------cCCEEEECchhhCC---CCCCCEeEEEEcchHhhccCHH
Confidence            456789999998 5454433222                  25566666664422   2246899999999998878888


Q ss_pred             HHHHHHHHhcCCCeEEEEEEE
Q 032462           81 PLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      .+++.+.++++ +|.+++...
T Consensus       112 ~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A          112 KSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             HHHHHHHHHBC-SSCEEEEEE
T ss_pred             HHHHHHHHHhC-CcEEEEEEc
Confidence            99999999999 986655443

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=96.66  E-value=0.0092  Score=42.49  Aligned_cols=82  Identities=18%  Similarity=0.129  Sum_probs=55.8

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      ++|+..|. +..+..+++|++.+              .++.+..-|..+..........||+|+ +|.. .+.....++.
T Consensus        99 ~~v~~vD~s~~~~~~~~~~~~~~--------------~~v~~~~~d~~~~~~~~~~~~~~D~v~-~~~~-~~~~~~~~l~  162 (227)
T 1g8a_A           99 GKIFGIEFSPRVLRELVPIVEER--------------RNIVPILGDATKPEEYRALVPKVDVIF-EDVA-QPTQAKILID  162 (227)
T ss_dssp             SEEEEEESCHHHHHHHHHHHSSC--------------TTEEEEECCTTCGGGGTTTCCCEEEEE-ECCC-STTHHHHHHH
T ss_pred             eEEEEEECCHHHHHHHHHHHhcc--------------CCCEEEEccCCCcchhhcccCCceEEE-ECCC-CHhHHHHHHH
Confidence            59999998 77888888888654              245555555554321112235799999 4554 3444456688


Q ss_pred             HHHHhcCCCeEEEEEEEec
Q 032462           85 TIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R  103 (140)
                      .+.++++|+|.+++....+
T Consensus       163 ~~~~~LkpgG~l~~~~~~~  181 (227)
T 1g8a_A          163 NAEVYLKRGGYGMIAVKSR  181 (227)
T ss_dssp             HHHHHEEEEEEEEEEEEGG
T ss_pred             HHHHhcCCCCEEEEEEecC
Confidence            8889999999998886544

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=96.66  E-value=0.0023  Score=50.46  Aligned_cols=81  Identities=12%  Similarity=0.159  Sum_probs=54.9

Q ss_pred             CC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCc-eEEEEeecCCCcccc-ccCCCccEEEEeecccCccchH
Q 032462            5 GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGS-IQAVELDWGNEDHIK-AVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         5 Ga-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~-v~~~~LdWg~~~~~~-~~~~~~D~IlasDviY~~~~~~   80 (140)
                      || +|++-|. +..++.+++|+++|+..           .+ +++..-|=.+  ... ....+||+|+ .|. |.  ...
T Consensus        76 ga~~V~avDi~~~av~~~~~N~~~Ngl~-----------~~~v~v~~~Da~~--~l~~~~~~~fD~V~-lDP-~g--~~~  138 (392)
T 3axs_A           76 CVEKAYANDISSKAIEIMKENFKLNNIP-----------EDRYEIHGMEANF--FLRKEWGFGFDYVD-LDP-FG--TPV  138 (392)
T ss_dssp             CEEEEEEECSCHHHHHHHHHHHHHTTCC-----------GGGEEEECSCHHH--HHHSCCSSCEEEEE-ECC-SS--CCH
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHhCCC-----------CceEEEEeCCHHH--HHHHhhCCCCcEEE-ECC-Cc--CHH
Confidence            65 8999998 88999999999999852           22 4443222110  011 1235799998 577 43  235


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEe
Q 032462           81 PLLQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~  102 (140)
                      +++....++++++|.+++.++.
T Consensus       139 ~~l~~a~~~Lk~gGll~~t~t~  160 (392)
T 3axs_A          139 PFIESVALSMKRGGILSLTATD  160 (392)
T ss_dssp             HHHHHHHHHEEEEEEEEEEECC
T ss_pred             HHHHHHHHHhCCCCEEEEEecc
Confidence            6888888888899988887743

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=96.65  E-value=0.019  Score=40.93  Aligned_cols=82  Identities=12%  Similarity=0.069  Sum_probs=50.0

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      .+|+..|. +..+..+.++.+..              .++....-|-.+..........||+|++.  +..+.....+++
T Consensus        82 ~~V~gvD~s~~~l~~~~~~a~~~--------------~~v~~~~~d~~~~~~~~~~~~~fD~V~~~--~~~~~~~~~~l~  145 (210)
T 1nt2_A           82 GIIYAVEYSAKPFEKLLELVRER--------------NNIIPLLFDASKPWKYSGIVEKVDLIYQD--IAQKNQIEILKA  145 (210)
T ss_dssp             SEEEEECCCHHHHHHHHHHHHHC--------------SSEEEECSCTTCGGGTTTTCCCEEEEEEC--CCSTTHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHhcC--------------CCeEEEEcCCCCchhhcccccceeEEEEe--ccChhHHHHHHH
Confidence            59999998 77777666554421              12333322222221101123689999865  344444555688


Q ss_pred             HHHHhcCCCeEEEEEEEec
Q 032462           85 TIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R  103 (140)
                      .+.++++|+|.++++.+.+
T Consensus       146 ~~~r~LkpgG~l~i~~~~~  164 (210)
T 1nt2_A          146 NAEFFLKEKGEVVIMVKAR  164 (210)
T ss_dssp             HHHHHEEEEEEEEEEEEHH
T ss_pred             HHHHHhCCCCEEEEEEecC
Confidence            8899999999999986543

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=96.63  E-value=0.0053  Score=47.00  Aligned_cols=80  Identities=11%  Similarity=-0.004  Sum_probs=57.3

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC-----ccch
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-----EHLL   79 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~-----~~~~   79 (140)
                      ++|+..|. +..+...++|+..|...             +++.   +++....  ...+||+|++..++..     ....
T Consensus       221 ~~v~~vD~s~~~l~~a~~~~~~~~~~-------------~~~~---~~d~~~~--~~~~fD~Iv~~~~~~~g~~~~~~~~  282 (343)
T 2pjd_A          221 IRLTLCDVSAPAVEASRATLAANGVE-------------GEVF---ASNVFSE--VKGRFDMIISNPPFHDGMQTSLDAA  282 (343)
T ss_dssp             CBCEEEESBHHHHHHHHHHHHHTTCC-------------CEEE---ECSTTTT--CCSCEEEEEECCCCCSSSHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHhCCC-------------CEEE---Ecccccc--ccCCeeEEEECCCcccCccCCHHHH
Confidence            58999998 77899999999987641             2333   3333222  2468999999877543     2345


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEec
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      ..+++.+.+.++|+|.+++.....
T Consensus       283 ~~~l~~~~~~LkpgG~l~i~~~~~  306 (343)
T 2pjd_A          283 QTLIRGAVRHLNSGGELRIVANAF  306 (343)
T ss_dssp             HHHHHHHGGGEEEEEEEEEEEETT
T ss_pred             HHHHHHHHHhCCCCcEEEEEEcCC
Confidence            678888888899999998876544

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=96.63  E-value=0.0026  Score=44.93  Aligned_cols=105  Identities=11%  Similarity=0.071  Sum_probs=68.3

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      |++|+..|. +..+...++|++.+..           ..++++..-++.+.  .+.... ||+|+..   ........++
T Consensus        81 ~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~~~~~~-fD~v~~~---~~~~~~~~~l  143 (210)
T 3c3p_A           81 SSRVVMIDPDRDNVEHARRMLHDNGL-----------IDRVELQVGDPLGI--AAGQRD-IDILFMD---CDVFNGADVL  143 (210)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHHSG-----------GGGEEEEESCHHHH--HTTCCS-EEEEEEE---TTTSCHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCC-----------CceEEEEEecHHHH--hccCCC-CCEEEEc---CChhhhHHHH
Confidence            679999998 8899999999987653           24566666555432  112234 9999864   3345667888


Q ss_pred             HHHHHhcCCCeEEEEEEEecC-----------hhHHHHHHHHHH--hcCeEEeecC
Q 032462           84 QTIFALSGPKTTILLGYEIRS-----------TSVHEQMLQMWK--SNFNVKLVPK  126 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~~R~-----------~~~~~~F~~~~~--~~f~v~~v~~  126 (140)
                      +.+..+++|+|.+++......           ......|.+.+.  ..+....+|.
T Consensus       144 ~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~  199 (210)
T 3c3p_A          144 ERMNRCLAKNALLIAVNALRRGSVAESHEDPETAALREFNHHLSRRRDFFTTIVPV  199 (210)
T ss_dssp             HHHGGGEEEEEEEEEESSSSCC------------CCCHHHHHHTTCTTEEEEEECS
T ss_pred             HHHHHhcCCCeEEEEECccccCcccCcccchHHHHHHHHHHHHhhCCCeEEEEEec
Confidence            888889999999887432221           111346777663  3565555554

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=96.62  E-value=0.0054  Score=45.81  Aligned_cols=113  Identities=15%  Similarity=0.035  Sum_probs=65.1

Q ss_pred             cCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc----
Q 032462            3 LLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----   76 (140)
Q Consensus         3 ~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~----   76 (140)
                      +.|. +|++.|. +.+++..++|+..|.. .... ......+++++..-|-.+.  .+. ..+||+|+. |..+..    
T Consensus        95 ~~~~~~v~~vDid~~~i~~ar~~~~~~~~-l~~~-~~~~~~~~v~~~~~D~~~~--l~~-~~~fD~Ii~-d~~~~~~~~~  168 (281)
T 1mjf_A           95 QHDVDEVIMVEIDEDVIMVSKDLIKIDNG-LLEA-MLNGKHEKAKLTIGDGFEF--IKN-NRGFDVIIA-DSTDPVGPAK  168 (281)
T ss_dssp             TSCCSEEEEEESCHHHHHHHHHHTCTTTT-HHHH-HHTTCCSSEEEEESCHHHH--HHH-CCCEEEEEE-ECCCCC----
T ss_pred             hCCCCEEEEEECCHHHHHHHHHHHhhccc-cccc-cccCCCCcEEEEECchHHH--hcc-cCCeeEEEE-CCCCCCCcch
Confidence            3454 9999998 8899999999822111 1000 0000124566655332111  112 468999995 665421    


Q ss_pred             cc-hHHHHHHHHHhcCCCeEEEEEEEe--cChhHHHHHHHHHHhcCeE
Q 032462           77 HL-LEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFNV  121 (140)
Q Consensus        77 ~~-~~~L~~tl~~ll~~~~~~~~~~~~--R~~~~~~~F~~~~~~~f~v  121 (140)
                      .+ ...+++.+.++++|+|.+++....  ..........+.+++.|..
T Consensus       169 ~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~~  216 (281)
T 1mjf_A          169 VLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDR  216 (281)
T ss_dssp             -TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSE
T ss_pred             hhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCc
Confidence            11 367888889999999998876544  2333345555666555653

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=96.62  E-value=0.0084  Score=44.58  Aligned_cols=82  Identities=16%  Similarity=0.222  Sum_probs=58.2

Q ss_pred             EEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc--cc------ccCCCccEEEEeecccCccc
Q 032462            8 VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH--IK------AVAPPFDYIIGTDVVYAEHL   78 (140)
Q Consensus         8 Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~--~~------~~~~~~D~IlasDviY~~~~   78 (140)
                      ++.+|. ++++...++++.....           ..++.+   .|.....  .+      ....+||+|+++.+++.-.-
T Consensus        85 ~~~vD~S~~ml~~a~~~~~~~~~-----------~~~v~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d  150 (292)
T 2aot_A           85 NEVVEPSAEQIAKYKELVAKTSN-----------LENVKF---AWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKD  150 (292)
T ss_dssp             EEEECSCHHHHHHHHHHHHTCSS-----------CTTEEE---EEECSCHHHHHHHHHTTTCCCCEEEEEEESCGGGCSC
T ss_pred             EEEEeCCHHHHHHHHHHHHhccC-----------CCcceE---EEEecchhhhhhhhccccCCCceeEEEEeeeeeecCC
Confidence            399997 7899988888754211           123332   3443321  11      12468999999999999888


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEec
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      .+..++-+.++|+|+|.++++...+
T Consensus       151 ~~~~l~~~~r~LkpgG~l~i~~~~~  175 (292)
T 2aot_A          151 IPATLKFFHSLLGTNAKMLIIVVSG  175 (292)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             HHHHHHHHHHHcCCCcEEEEEEecC
Confidence            8889999999999999998875443

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=96.58  E-value=0.0088  Score=45.03  Aligned_cols=104  Identities=12%  Similarity=0.025  Sum_probs=64.0

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC-c---c--c
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-E---H--L   78 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~-~---~--~   78 (140)
                      .+|++.|. +.++..+++|+.......        ...++++..-|..+.  .+....+||+|+. |.... .   .  .
T Consensus       115 ~~v~~vDid~~~~~~a~~~~~~~~~~~--------~~~~v~~~~~D~~~~--l~~~~~~fD~Ii~-d~~~~~~~~~~~l~  183 (296)
T 1inl_A          115 EKAILCEVDGLVIEAARKYLKQTSCGF--------DDPRAEIVIANGAEY--VRKFKNEFDVIII-DSTDPTAGQGGHLF  183 (296)
T ss_dssp             SEEEEEESCHHHHHHHHHHCHHHHGGG--------GCTTEEEEESCHHHH--GGGCSSCEEEEEE-EC----------CC
T ss_pred             CEEEEEECCHHHHHHHHHHhHhhcccc--------CCCceEEEECcHHHH--HhhCCCCceEEEE-cCCCcccCchhhhh
Confidence            59999998 889999999986521111        124666666554321  1122467999995 54321 0   0  2


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEe--cChhHHHHHHHHHHhcCe
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFN  120 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~--R~~~~~~~F~~~~~~~f~  120 (140)
                      ...+++.+.++++|+|.+++....  ..........+.+++.|.
T Consensus       184 ~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~  227 (296)
T 1inl_A          184 TEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFP  227 (296)
T ss_dssp             SHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCC
Confidence            367888888999999999876443  223334556666665565

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=96.57  E-value=0.0023  Score=46.73  Aligned_cols=82  Identities=15%  Similarity=0.099  Sum_probs=57.4

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC-ccch
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-EHLL   79 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~-~~~~   79 (140)
                      +..|++|+..|. +..+...+++...|                  +...+..+.   +.....||+|++..+++. ....
T Consensus        73 ~~~~~~v~gvD~s~~~l~~a~~~~~~~------------------~~~~d~~~~---~~~~~~fD~v~~~~~~~~~~~~~  131 (260)
T 2avn_A           73 QERGFEVVLVDPSKEMLEVAREKGVKN------------------VVEAKAEDL---PFPSGAFEAVLALGDVLSYVENK  131 (260)
T ss_dssp             HTTTCEEEEEESCHHHHHHHHHHTCSC------------------EEECCTTSC---CSCTTCEEEEEECSSHHHHCSCH
T ss_pred             HHcCCeEEEEeCCHHHHHHHHhhcCCC------------------EEECcHHHC---CCCCCCEEEEEEcchhhhccccH
Confidence            456889999998 77888888764311                  222233222   222468999999876543 2347


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEecC
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R~  104 (140)
                      ..+++.+.++++|+|.+++....+.
T Consensus       132 ~~~l~~~~~~LkpgG~l~~~~~~~~  156 (260)
T 2avn_A          132 DKAFSEIRRVLVPDGLLIATVDNFY  156 (260)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred             HHHHHHHHHHcCCCeEEEEEeCChH
Confidence            8889999999999999998877654

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=96.57  E-value=0.0004  Score=50.16  Aligned_cols=80  Identities=18%  Similarity=0.044  Sum_probs=52.5

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      ||..|++|+..|. +..+..+++|++.++.           ..++.+..-|+.+..    ....||+|++.-........
T Consensus        96 la~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~----~~~~~D~v~~~~~~~~~~~~  160 (241)
T 3gdh_A           96 FALTGMRVIAIDIDPVKIALARNNAEVYGI-----------ADKIEFICGDFLLLA----SFLKADVVFLSPPWGGPDYA  160 (241)
T ss_dssp             HHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHG----GGCCCSEEEECCCCSSGGGG
T ss_pred             HHHcCCEEEEEECCHHHHHHHHHHHHHcCC-----------CcCeEEEECChHHhc----ccCCCCEEEECCCcCCcchh
Confidence            3567889999998 8899999999998864           246777777765442    24689999965544433333


Q ss_pred             HHHHHHHHHhcCCCeE
Q 032462           80 EPLLQTIFALSGPKTT   95 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~   95 (140)
                      ...+.-+..+++|+|.
T Consensus       161 ~~~~~~~~~~L~pgG~  176 (241)
T 3gdh_A          161 TAETFDIRTMMSPDGF  176 (241)
T ss_dssp             GSSSBCTTTSCSSCHH
T ss_pred             hhHHHHHHhhcCCcce
Confidence            3233334444555554

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=96.54  E-value=0.0044  Score=44.14  Aligned_cols=108  Identities=11%  Similarity=0.015  Sum_probs=70.8

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCc-ccccc--CCCccEEEEeecccCccchH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAV--APPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~-~~~~~--~~~~D~IlasDviY~~~~~~   80 (140)
                      +++|+..|. +..+...++|++.++.           ..++.+..-+..+.. .....  ..+||+|+.. .-  .....
T Consensus        94 ~~~v~~vD~~~~~~~~a~~~~~~~g~-----------~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d-~~--~~~~~  159 (229)
T 2avd_A           94 DGRVVTCEVDAQPPELGRPLWRQAEA-----------EHKIDLRLKPALETLDELLAAGEAGTFDVAVVD-AD--KENCS  159 (229)
T ss_dssp             TCEEEEEESCSHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHHHHHTTCTTCEEEEEEC-SC--STTHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCC-----------CCeEEEEEcCHHHHHHHHHhcCCCCCccEEEEC-CC--HHHHH
Confidence            569999998 8899999999988764           245666654443211 01101  1689999873 22  34556


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHHH--hcCeEEeecC
Q 032462           81 PLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWK--SNFNVKLVPK  126 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~R~~------------~~~~~F~~~~~--~~f~v~~v~~  126 (140)
                      .+++.+..+++|+|.+++....+..            .....|.+.+.  ..|....+|.
T Consensus       160 ~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~  219 (229)
T 2avd_A          160 AYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL  219 (229)
T ss_dssp             HHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred             HHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEec
Confidence            7888888999999998885443221            12467887774  3677777765

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=96.51  E-value=0.0086  Score=40.92  Aligned_cols=78  Identities=13%  Similarity=0.078  Sum_probs=51.9

Q ss_pred             eEEEEeecCCCccccccCCCccEEEEeecccCc-cchHHHHHHHHHhcCCCeEEEEEEEecCh-------hHHHHHHHHH
Q 032462           44 IQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-HLLEPLLQTIFALSGPKTTILLGYEIRST-------SVHEQMLQMW  115 (140)
Q Consensus        44 v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~-~~~~~L~~tl~~ll~~~~~~~~~~~~R~~-------~~~~~F~~~~  115 (140)
                      +.+...+-.+.+..+.....||+|+++.++..- .....+++-+.++++|+|.+++....-..       ...+.+.+.+
T Consensus        44 ~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l  123 (176)
T 2ld4_A           44 GRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSAL  123 (176)
T ss_dssp             SEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHH
T ss_pred             cEEEEechhcCccccCCCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHH
Confidence            455555554432110135689999999988765 55688999999999999999986553211       1135666666


Q ss_pred             -HhcCeEE
Q 032462          116 -KSNFNVK  122 (140)
Q Consensus       116 -~~~f~v~  122 (140)
                       +.|| ++
T Consensus       124 ~~aGf-i~  130 (176)
T 2ld4_A          124 TLSGL-VE  130 (176)
T ss_dssp             HHTTC-EE
T ss_pred             HHCCC-cE
Confidence             4699 55

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=96.50  E-value=0.0025  Score=51.46  Aligned_cols=83  Identities=12%  Similarity=0.062  Sum_probs=58.0

Q ss_pred             ccCCC-EEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cc
Q 032462            2 ALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HL   78 (140)
Q Consensus         2 A~lGa-~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~   78 (140)
                      |+.|+ +|+..|...++..+++|++.|+.           ..++++..-++.+.+ .   ..+||+|++.-+.|..  +.
T Consensus       177 a~~~~~~V~gvD~s~~l~~A~~~~~~~gl-----------~~~v~~~~~d~~~~~-~---~~~fD~Ivs~~~~~~~~~e~  241 (480)
T 3b3j_A          177 AQAGARKIYAVEASTMAQHAEVLVKSNNL-----------TDRIVVIPGKVEEVS-L---PEQVDIIISEPMGYMLFNER  241 (480)
T ss_dssp             HHTTCSEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEESCTTTCC-C---SSCEEEEECCCCHHHHTCHH
T ss_pred             HHcCCCEEEEEEcHHHHHHHHHHHHHcCC-----------CCcEEEEECchhhCc-c---CCCeEEEEEeCchHhcCcHH
Confidence            45675 99999995588999999998864           357888888887632 1   3589999986555532  22


Q ss_pred             hHHHHHHHHHhcCCCeEEEEE
Q 032462           79 LEPLLQTIFALSGPKTTILLG   99 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~   99 (140)
                      ....+..+.++++|+|.+++.
T Consensus       242 ~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          242 MLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             HHHHHHHGGGGEEEEEEEESC
T ss_pred             HHHHHHHHHHhcCCCCEEEEE
Confidence            223333456778899988753

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=96.48  E-value=0.0027  Score=46.08  Aligned_cols=106  Identities=8%  Similarity=0.037  Sum_probs=71.3

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccccc------CCCccEEEEeecccCcc
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV------APPFDYIIGTDVVYAEH   77 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~------~~~~D~IlasDviY~~~   77 (140)
                      |++|+..|. ++.+...++|++.++.           ..++++..-|+.+.  .+..      ..+||+|+. |  ....
T Consensus        95 ~~~v~~iD~~~~~~~~a~~~~~~~g~-----------~~~i~~~~gda~~~--l~~l~~~~~~~~~fD~I~~-d--~~~~  158 (237)
T 3c3y_A           95 DGKITAIDFDREAYEIGLPFIRKAGV-----------EHKINFIESDAMLA--LDNLLQGQESEGSYDFGFV-D--ADKP  158 (237)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHH--HHHHHHSTTCTTCEEEEEE-C--SCGG
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHH--HHHHHhccCCCCCcCEEEE-C--CchH
Confidence            579999998 8899999999988653           24566666555432  1111      468999985 3  2345


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEEEecCh-----------------hHHHHHHHHHH--hcCeEEeecC
Q 032462           78 LLEPLLQTIFALSGPKTTILLGYEIRST-----------------SVHEQMLQMWK--SNFNVKLVPK  126 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~~~R~~-----------------~~~~~F~~~~~--~~f~v~~v~~  126 (140)
                      ....+++.+..+++|+|.+++....+..                 .....|.+.+.  ..|....+|.
T Consensus       159 ~~~~~l~~~~~~L~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~~~~~i~~~~~~l~~~~~~~~~~lp~  226 (237)
T 3c3y_A          159 NYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIEIVHLPL  226 (237)
T ss_dssp             GHHHHHHHHHHHEEEEEEEEEECTTGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred             HHHHHHHHHHHhcCCCeEEEEecCCcCCccCCCcccchhhHHHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence            6678888888999999998775432210                 12347777763  4677777774

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=96.48  E-value=0.013  Score=42.05  Aligned_cols=99  Identities=8%  Similarity=-0.049  Sum_probs=64.0

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe--ecccCccch--
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT--DVVYAEHLL--   79 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas--DviY~~~~~--   79 (140)
                      +++|+..|. +..+..+++|++.++.            .++++..-|-.+.-........||.|+..  |........  
T Consensus        58 ~~~v~giD~s~~~l~~a~~~~~~~~l------------~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~r  125 (218)
T 3dxy_A           58 EQDFLGIEVHSPGVGACLASAHEEGL------------SNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKR  125 (218)
T ss_dssp             TSEEEEECSCHHHHHHHHHHHHHTTC------------SSEEEECSCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGGGG
T ss_pred             CCeEEEEEecHHHHHHHHHHHHHhCC------------CcEEEEECCHHHHHHHHcCCCChheEEEeCCCCccchhhhhh
Confidence            458999998 8899999999987753            34555444322110000125689999876  654443332  


Q ss_pred             ----HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHh
Q 032462           80 ----EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS  117 (140)
Q Consensus        80 ----~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~  117 (140)
                          +.+++.+.++++|+|.++++...+.-  .+...+.++.
T Consensus       126 r~~~~~~l~~~~r~LkpGG~l~i~td~~~~--~~~~~~~~~~  165 (218)
T 3dxy_A          126 RIVQVPFAELVKSKLQLGGVFHMATDWEPY--AEHMLEVMSS  165 (218)
T ss_dssp             SSCSHHHHHHHHHHEEEEEEEEEEESCHHH--HHHHHHHHHT
T ss_pred             hhhhHHHHHHHHHHcCCCcEEEEEeCCHHH--HHHHHHHHHh
Confidence                35999999999999999988765432  2334455544

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=96.43  E-value=0.0021  Score=48.28  Aligned_cols=96  Identities=20%  Similarity=0.294  Sum_probs=62.8

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcc-----------c---ccCCCC-----CCCCCceEEEEeecCCCccccccCCCc
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSR-----------I---SQMNPG-----SDLLGSIQAVELDWGNEDHIKAVAPPF   64 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~-----------~---~~~~~~-----~~~~~~v~~~~LdWg~~~~~~~~~~~~   64 (140)
                      |++|+.||. +.+|...++|+-.....           .   .....+     ..-...|.....++.+++ .+ ...+|
T Consensus       137 ~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~-~~-~~~~f  214 (274)
T 1af7_A          137 RWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQ-YN-VPGPF  214 (274)
T ss_dssp             SEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSS-CC-CCCCE
T ss_pred             CeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCC-CC-cCCCe
Confidence            469999998 88999999886211000           0   000000     000136889999998742 22 13689


Q ss_pred             cEEEEeecc-cC-ccchHHHHHHHHHhcCCCeEEEEEEEe
Q 032462           65 DYIIGTDVV-YA-EHLLEPLLQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        65 D~IlasDvi-Y~-~~~~~~L~~tl~~ll~~~~~~~~~~~~  102 (140)
                      |+|++..++ |. ++....+++.+...++|+|.+++++..
T Consensus       215 DlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~sE  254 (274)
T 1af7_A          215 DAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSE  254 (274)
T ss_dssp             EEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred             eEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEecc
Confidence            999999885 44 345678888888899999999886543

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=96.43  E-value=0.0072  Score=42.56  Aligned_cols=64  Identities=9%  Similarity=0.011  Sum_probs=47.8

Q ss_pred             CCCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeec
Q 032462           61 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVP  125 (140)
Q Consensus        61 ~~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~  125 (140)
                      ...||+|+++.++.. .....+++.+..+++|+|.+++..........+.+.+.+ +.||.+..+.
T Consensus       113 ~~~fD~v~~~~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  177 (215)
T 2zfu_A          113 DESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKD  177 (215)
T ss_dssp             TTCEEEEEEESCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEE
T ss_pred             CCCEeEEEEehhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEe
Confidence            457999999999974 566788888899999999998875544322345666767 4699977654

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.40  E-value=0.0019  Score=46.92  Aligned_cols=84  Identities=13%  Similarity=0.038  Sum_probs=56.3

Q ss_pred             ccC-CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc--
Q 032462            2 ALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--   77 (140)
Q Consensus         2 A~l-Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~--   77 (140)
                      |+. +++|+..|. ++++..++++...+.             .++++..-+|.+... ......||.|+ .|.+....  
T Consensus        79 ~~~~~~~v~~id~~~~~~~~a~~~~~~~~-------------~~~~~~~~~a~~~~~-~~~~~~FD~i~-~D~~~~~~~~  143 (236)
T 3orh_A           79 QEAPIDEHWIIECNDGVFQRLRDWAPRQT-------------HKVIPLKGLWEDVAP-TLPDGHFDGIL-YDTYPLSEET  143 (236)
T ss_dssp             TTSCEEEEEEEECCHHHHHHHHHHGGGCS-------------SEEEEEESCHHHHGG-GSCTTCEEEEE-ECCCCCBGGG
T ss_pred             HHhCCcEEEEEeCCHHHHHHHHHHHhhCC-------------CceEEEeehHHhhcc-cccccCCceEE-Eeeeecccch
Confidence            344 458999998 889999998875543             466777777764321 12356799986 35543322  


Q ss_pred             ----chHHHHHHHHHhcCCCeEEEEEE
Q 032462           78 ----LLEPLLQTIFALSGPKTTILLGY  100 (140)
Q Consensus        78 ----~~~~L~~tl~~ll~~~~~~~~~~  100 (140)
                          ..+.+++-+.++|+|+|++.+..
T Consensus       144 ~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          144 WHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             TTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             hhhcchhhhhhhhhheeCCCCEEEEEe
Confidence                23456677778999999987654

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=96.39  E-value=0.022  Score=43.29  Aligned_cols=78  Identities=15%  Similarity=0.236  Sum_probs=55.9

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL   82 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L   82 (140)
                      .|++|+..|. ++.+...++|++..+.            .++++..   |+....+  ..+||+|+.+-.   ......+
T Consensus       145 ~ga~V~gIDis~~~l~~Ar~~~~~~gl------------~~v~~v~---gDa~~l~--d~~FDvV~~~a~---~~d~~~~  204 (298)
T 3fpf_A          145 YGMRVNVVEIEPDIAELSRKVIEGLGV------------DGVNVIT---GDETVID--GLEFDVLMVAAL---AEPKRRV  204 (298)
T ss_dssp             TCCEEEEEESSHHHHHHHHHHHHHHTC------------CSEEEEE---SCGGGGG--GCCCSEEEECTT---CSCHHHH
T ss_pred             cCCEEEEEECCHHHHHHHHHHHHhcCC------------CCeEEEE---CchhhCC--CCCcCEEEECCC---ccCHHHH
Confidence            5899999998 8899999999987542            2444433   3222222  468999987544   2445578


Q ss_pred             HHHHHHhcCCCeEEEEEEE
Q 032462           83 LQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~  101 (140)
                      ++.+.+.++|+|++++...
T Consensus       205 l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          205 FRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             HHHHHHHCCTTCEEEEEEC
T ss_pred             HHHHHHHcCCCcEEEEEcC
Confidence            8888889999999987653

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=96.38  E-value=0.011  Score=43.30  Aligned_cols=96  Identities=13%  Similarity=0.091  Sum_probs=63.8

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHh-hcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N-~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L   82 (140)
                      +.+|+..|. ++.+..+++|++.+ +..          ..++.+...|..+..   .....||+|+. |.    .....+
T Consensus       124 ~~~v~~vD~~~~~~~~a~~~~~~~~g~~----------~~~v~~~~~d~~~~~---~~~~~~D~v~~-~~----~~~~~~  185 (280)
T 1i9g_A          124 AGQVISYEQRADHAEHARRNVSGCYGQP----------PDNWRLVVSDLADSE---LPDGSVDRAVL-DM----LAPWEV  185 (280)
T ss_dssp             TSEEEEECSCHHHHHHHHHHHHHHHTSC----------CTTEEEECSCGGGCC---CCTTCEEEEEE-ES----SCGGGG
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHhcCCC----------CCcEEEEECchHhcC---CCCCceeEEEE-CC----cCHHHH
Confidence            469999998 88999999999887 311          135566555554321   12457999997 32    233467


Q ss_pred             HHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH--hcCe
Q 032462           83 LQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK--SNFN  120 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~--~~f~  120 (140)
                      +..+..+++|+|.+++......  ....+.+.++  .+|.
T Consensus       186 l~~~~~~L~pgG~l~~~~~~~~--~~~~~~~~l~~~~~f~  223 (280)
T 1i9g_A          186 LDAVSRLLVAGGVLMVYVATVT--QLSRIVEALRAKQCWT  223 (280)
T ss_dssp             HHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHHSSBC
T ss_pred             HHHHHHhCCCCCEEEEEeCCHH--HHHHHHHHHHhcCCcC
Confidence            7888888999999888765432  2456666664  3665

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=96.37  E-value=0.022  Score=43.19  Aligned_cols=105  Identities=13%  Similarity=0.066  Sum_probs=65.8

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHH-hhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc---c--
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---H--   77 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~-N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~---~--   77 (140)
                      +.+|++.|. +.++...++|+.. |....        ...++++..-|-.+.  .+....+||+|+. |.....   .  
T Consensus       101 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~--------~~~~v~~~~~D~~~~--l~~~~~~fD~Ii~-d~~~~~~~~~~~  169 (314)
T 1uir_A          101 VEKAVMVDIDGELVEVAKRHMPEWHQGAF--------DDPRAVLVIDDARAY--LERTEERYDVVII-DLTDPVGEDNPA  169 (314)
T ss_dssp             CCEEEEEESCHHHHHHHHHHCHHHHTTGG--------GCTTEEEEESCHHHH--HHHCCCCEEEEEE-ECCCCBSTTCGG
T ss_pred             CCEEEEEECCHHHHHHHHHHhHhhccccc--------cCCceEEEEchHHHH--HHhcCCCccEEEE-CCCCcccccCcc
Confidence            359999998 7899999999864 33211        124566655443321  1123568999997 544322   1  


Q ss_pred             ---chHHHHHHHHHhcCCCeEEEEEEEecC---hhHHHHHHHHHHhcCe
Q 032462           78 ---LLEPLLQTIFALSGPKTTILLGYEIRS---TSVHEQMLQMWKSNFN  120 (140)
Q Consensus        78 ---~~~~L~~tl~~ll~~~~~~~~~~~~R~---~~~~~~F~~~~~~~f~  120 (140)
                         ....+++.+.++++|+|.+++......   .+......+.+++.|.
T Consensus       170 ~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~  218 (314)
T 1uir_A          170 RLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFR  218 (314)
T ss_dssp             GGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCS
T ss_pred             hhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCC
Confidence               146788999999999999887654332   2334555666666665

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=96.35  E-value=0.02  Score=40.00  Aligned_cols=101  Identities=18%  Similarity=0.167  Sum_probs=60.8

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc--
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--   77 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~--   77 (140)
                      |..|+ +|+..|. +..+..+++|+..|+.             ++.+..-|+.+.      ...||+|++ |.-|...  
T Consensus        68 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~------~~~~D~v~~-~~p~~~~~~  127 (207)
T 1wy7_A           68 LLLGAKEVICVEVDKEAVDVLIENLGEFKG-------------KFKVFIGDVSEF------NSRVDIVIM-NPPFGSQRK  127 (207)
T ss_dssp             HHTTCSEEEEEESCHHHHHHHHHHTGGGTT-------------SEEEEESCGGGC------CCCCSEEEE-CCCCSSSST
T ss_pred             HHcCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CEEEEECchHHc------CCCCCEEEE-cCCCccccC
Confidence            45576 7999998 8899999999887642             345554444332      248999985 5555432  


Q ss_pred             -chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecC
Q 032462           78 -LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK  126 (140)
Q Consensus        78 -~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~  126 (140)
                       ....+++.+..++   +.+++... -..+..+.+.+.+ +.||.++.+..
T Consensus       128 ~~~~~~l~~~~~~l---~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~  174 (207)
T 1wy7_A          128 HADRPFLLKAFEIS---DVVYSIHL-AKPEVRRFIEKFSWEHGFVVTHRLT  174 (207)
T ss_dssp             TTTHHHHHHHHHHC---SEEEEEEE-CCHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             CchHHHHHHHHHhc---CcEEEEEe-CCcCCHHHHHHHHHHCCCeEEEEEE
Confidence             3345556555555   44555542 1233344444555 45888776544

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=96.35  E-value=0.0079  Score=44.49  Aligned_cols=79  Identities=10%  Similarity=0.011  Sum_probs=54.5

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      ||..|++|+.+|. +.++...+                  ..+++.+..-+-.+.   +.....||+|+++.++..-+ .
T Consensus        57 l~~~~~~v~gvD~s~~ml~~a~------------------~~~~v~~~~~~~e~~---~~~~~sfD~v~~~~~~h~~~-~  114 (257)
T 4hg2_A           57 LAEFFERVHAVDPGEAQIRQAL------------------RHPRVTYAVAPAEDT---GLPPASVDVAIAAQAMHWFD-L  114 (257)
T ss_dssp             HHTTCSEEEEEESCHHHHHTCC------------------CCTTEEEEECCTTCC---CCCSSCEEEEEECSCCTTCC-H
T ss_pred             HHHhCCEEEEEeCcHHhhhhhh------------------hcCCceeehhhhhhh---cccCCcccEEEEeeehhHhh-H
Confidence            4567889999998 55554321                  124566665554432   23357899999999997654 5


Q ss_pred             HHHHHHHHHhcCCCeEEEE-EEE
Q 032462           80 EPLLQTIFALSGPKTTILL-GYE  101 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~-~~~  101 (140)
                      +.+++-+.++|+|+|.+.+ .+.
T Consensus       115 ~~~~~e~~rvLkpgG~l~~~~~~  137 (257)
T 4hg2_A          115 DRFWAELRRVARPGAVFAAVTYG  137 (257)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHcCCCCEEEEEECC
Confidence            6788888999999998754 444

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=96.34  E-value=0.0091  Score=42.99  Aligned_cols=107  Identities=10%  Similarity=0.086  Sum_probs=70.1

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccccc-CCCccEEEEeecccCccchHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV-APPFDYIIGTDVVYAEHLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~-~~~~D~IlasDviY~~~~~~~L   82 (140)
                      |++|+..|. ++.+...++|++.++..          ..++++..-|..+.  .+.. ..+||+|+. |.  .......+
T Consensus        81 ~~~v~~vD~~~~~~~~a~~~~~~~g~~----------~~~i~~~~gda~~~--l~~~~~~~fD~V~~-d~--~~~~~~~~  145 (221)
T 3dr5_A           81 NTTLTCIDPESEHQRQAKALFREAGYS----------PSRVRFLLSRPLDV--MSRLANDSYQLVFG-QV--SPMDLKAL  145 (221)
T ss_dssp             TSEEEEECSCHHHHHHHHHHHHHTTCC----------GGGEEEECSCHHHH--GGGSCTTCEEEEEE-CC--CTTTHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCCC----------cCcEEEEEcCHHHH--HHHhcCCCcCeEEE-cC--cHHHHHHH
Confidence            679999998 88999999999987641          13566655333221  1122 468999975 33  23456678


Q ss_pred             HHHHHHhcCCCeEEEEEEEec----------Chh--HHHHHHHHHH--hcCeEEeecC
Q 032462           83 LQTIFALSGPKTTILLGYEIR----------STS--VHEQMLQMWK--SNFNVKLVPK  126 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~R----------~~~--~~~~F~~~~~--~~f~v~~v~~  126 (140)
                      ++.+..+++|+|.+++....+          ...  ....|.+.+.  ..|+...+|.
T Consensus       146 l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~  203 (221)
T 3dr5_A          146 VDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPL  203 (221)
T ss_dssp             HHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEESS
T ss_pred             HHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEeec
Confidence            888889999999998743322          111  2467777774  3677766664

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=96.34  E-value=0.006  Score=46.81  Aligned_cols=80  Identities=19%  Similarity=0.086  Sum_probs=58.3

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc-------
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-------   77 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~-------   77 (140)
                      ++|+..|. +.++...+.|++.++.            ..+.+..-|..+.+   .....||+|+ +|.-|...       
T Consensus       229 ~~v~g~Di~~~~i~~a~~n~~~~g~------------~~i~~~~~D~~~~~---~~~~~~D~Ii-~npPyg~r~~~~~~~  292 (354)
T 3tma_A          229 SPVYAGDLDEKRLGLAREAALASGL------------SWIRFLRADARHLP---RFFPEVDRIL-ANPPHGLRLGRKEGL  292 (354)
T ss_dssp             SCEEEEESCHHHHHHHHHHHHHTTC------------TTCEEEECCGGGGG---GTCCCCSEEE-ECCCSCC----CHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCC------------CceEEEeCChhhCc---cccCCCCEEE-ECCCCcCccCCcccH
Confidence            68999998 8899999999998764            25677766665432   2234589887 45556532       


Q ss_pred             --chHHHHHHHHHhcCCCeEEEEEEE
Q 032462           78 --LLEPLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        78 --~~~~L~~tl~~ll~~~~~~~~~~~  101 (140)
                        ....+++.+.++++|+|.+++...
T Consensus       293 ~~~~~~~~~~~~~~LkpgG~l~i~t~  318 (354)
T 3tma_A          293 FHLYWDFLRGALALLPPGGRVALLTL  318 (354)
T ss_dssp             HHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence              236788888899999999988755

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.31  E-value=0.0032  Score=45.33  Aligned_cols=85  Identities=14%  Similarity=0.053  Sum_probs=56.6

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEE-eecccCcc-
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIG-TDVVYAEH-   77 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ila-sDviY~~~-   77 (140)
                      +..|. +|+..|. +.++..+++|.+.+.             .++.+..-++.+... +.....||+|+. +-.+..+. 
T Consensus        79 ~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-------------~~v~~~~~d~~~~~~-~~~~~~fD~V~~d~~~~~~~~~  144 (236)
T 1zx0_A           79 QEAPIDEHWIIECNDGVFQRLRDWAPRQT-------------HKVIPLKGLWEDVAP-TLPDGHFDGILYDTYPLSEETW  144 (236)
T ss_dssp             HTSCEEEEEEEECCHHHHHHHHHHGGGCS-------------SEEEEEESCHHHHGG-GSCTTCEEEEEECCCCCBGGGT
T ss_pred             HhcCCCeEEEEcCCHHHHHHHHHHHHhcC-------------CCeEEEecCHHHhhc-ccCCCceEEEEECCcccchhhh
Confidence            34455 8999998 889999998765442             356777767654310 222468999998 43332222 


Q ss_pred             ---chHHHHHHHHHhcCCCeEEEEEE
Q 032462           78 ---LLEPLLQTIFALSGPKTTILLGY  100 (140)
Q Consensus        78 ---~~~~L~~tl~~ll~~~~~~~~~~  100 (140)
                         ..+.+++.+.++|+|+|.+++..
T Consensus       145 ~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          145 HTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             TTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             hhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence               23356788888999999988653

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=96.30  E-value=0.014  Score=43.23  Aligned_cols=84  Identities=12%  Similarity=0.029  Sum_probs=55.6

Q ss_pred             C-CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccc-cccCCCccEEEEeecccCc-----
Q 032462            5 G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-KAVAPPFDYIIGTDVVYAE-----   76 (140)
Q Consensus         5 G-a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~-~~~~~~~D~IlasDviY~~-----   76 (140)
                      | ++|+..|. +..+..+++|++.++.            .++.+..-|..+.... .....+||+|++ |.-|..     
T Consensus       107 ~~~~v~avD~~~~~l~~~~~~~~~~g~------------~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~-d~Pcs~~g~~~  173 (274)
T 3ajd_A          107 NKGTIVAVEISKTRTKALKSNINRMGV------------LNTIIINADMRKYKDYLLKNEIFFDKILL-DAPCSGNIIKD  173 (274)
T ss_dssp             TCSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEESCHHHHHHHHHHTTCCEEEEEE-EECCC------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHhCC------------CcEEEEeCChHhcchhhhhccccCCEEEE-cCCCCCCcccc
Confidence            5 59999998 7899999999998763            2456555444322110 001468999985 433321     


Q ss_pred             --------------cchHHHHHHHHHhcCCCeEEEEEEE
Q 032462           77 --------------HLLEPLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        77 --------------~~~~~L~~tl~~ll~~~~~~~~~~~  101 (140)
                                    .....+++.+..+++|+|.++++..
T Consensus       174 ~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc  212 (274)
T 3ajd_A          174 KNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC  212 (274)
T ss_dssp             ------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence                          3446778888888999999877654

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=96.22  E-value=0.02  Score=45.59  Aligned_cols=106  Identities=13%  Similarity=0.047  Sum_probs=62.6

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEE------eecccC---
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIG------TDVVYA---   75 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ila------sDviY~---   75 (140)
                      ++|+..|. +..+..+++|++.++.            .++.+..-|..+... ......||+|+.      .-++..   
T Consensus       285 ~~v~a~D~s~~~l~~~~~~~~~~g~------------~~v~~~~~D~~~~~~-~~~~~~fD~Vl~D~Pcsg~g~~~~~pd  351 (450)
T 2yxl_A          285 GKIYAFDVDKMRMKRLKDFVKRMGI------------KIVKPLVKDARKAPE-IIGEEVADKVLLDAPCTSSGTIGKNPE  351 (450)
T ss_dssp             SEEEEECSCHHHHHHHHHHHHHTTC------------CSEEEECSCTTCCSS-SSCSSCEEEEEEECCCCCGGGTTTSTT
T ss_pred             CEEEEEcCCHHHHHHHHHHHHHcCC------------CcEEEEEcChhhcch-hhccCCCCEEEEcCCCCCCeeeccChh
Confidence            69999998 7899999999998764            246666555544321 011257999994      222221   


Q ss_pred             ------ccch-------HHHHHHHHHhcCCCeEEEEEEEecCh----hHHHHHHHHHHhcCeEEeec
Q 032462           76 ------EHLL-------EPLLQTIFALSGPKTTILLGYEIRST----SVHEQMLQMWKSNFNVKLVP  125 (140)
Q Consensus        76 ------~~~~-------~~L~~tl~~ll~~~~~~~~~~~~R~~----~~~~~F~~~~~~~f~v~~v~  125 (140)
                            ++.+       ..++..+..+++|+|.++++.-.-.+    .....|++.. .+|..+.+.
T Consensus       352 ~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~-~~~~~~~~~  417 (450)
T 2yxl_A          352 LRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVH-PEFKLVPLK  417 (450)
T ss_dssp             HHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHC-SSCEECCCC
T ss_pred             hhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhC-CCCEEeecc
Confidence                  1111       45677777778899988765433222    2233444321 267766554

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=96.21  E-value=0.012  Score=45.24  Aligned_cols=107  Identities=13%  Similarity=0.033  Sum_probs=66.6

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEE--eecccCcc--ch
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIG--TDVVYAEH--LL   79 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ila--sDviY~~~--~~   79 (140)
                      +++|++.|. +.++...++|+.......        ...++++..-|+.+... .....+||+|+.  +|......  ..
T Consensus       144 ~~~V~~VDis~~~l~~Ar~~~~~~~~gl--------~~~rv~~~~~D~~~~l~-~~~~~~fDlIi~d~~~p~~~~~~l~~  214 (334)
T 1xj5_A          144 IEQIDMCEIDKMVVDVSKQFFPDVAIGY--------EDPRVNLVIGDGVAFLK-NAAEGSYDAVIVDSSDPIGPAKELFE  214 (334)
T ss_dssp             CCEEEEEESCHHHHHHHHHHCHHHHGGG--------GSTTEEEEESCHHHHHH-TSCTTCEEEEEECCCCTTSGGGGGGS
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhhcccc--------CCCcEEEEECCHHHHHH-hccCCCccEEEECCCCccCcchhhhH
Confidence            359999998 889999999987642211        12567777766643210 011368999996  22222212  14


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEe--cChhHHHHHHHHHHhcCe
Q 032462           80 EPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFN  120 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~--R~~~~~~~F~~~~~~~f~  120 (140)
                      ..+++.+.++|+|+|.+++....  ..........+.+++.|.
T Consensus       215 ~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~  257 (334)
T 1xj5_A          215 KPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFK  257 (334)
T ss_dssp             HHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHHHhCc
Confidence            67888899999999999875332  233334445555666665

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=96.20  E-value=0.039  Score=37.68  Aligned_cols=97  Identities=11%  Similarity=0.091  Sum_probs=56.7

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc--
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--   77 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~--   77 (140)
                      ||+.| +|+..|. +..+..         .            .++.+..-|+.++.  +  ..+||+|++.-..+...  
T Consensus        41 l~~~~-~v~gvD~s~~~~~~---------~------------~~~~~~~~d~~~~~--~--~~~fD~i~~n~~~~~~~~~   94 (170)
T 3q87_B           41 LRKRN-TVVSTDLNIRALES---------H------------RGGNLVRADLLCSI--N--QESVDVVVFNPPYVPDTDD   94 (170)
T ss_dssp             HTTTS-EEEEEESCHHHHHT---------C------------SSSCEEECSTTTTB--C--GGGCSEEEECCCCBTTCCC
T ss_pred             HHhcC-cEEEEECCHHHHhc---------c------------cCCeEEECChhhhc--c--cCCCCEEEECCCCccCCcc
Confidence            35667 9999998 666655         1            23455666665432  1  26899999854433211  


Q ss_pred             -------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeecC
Q 032462           78 -------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK  126 (140)
Q Consensus        78 -------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~~  126 (140)
                             ....++..+...+ |+|.+++.......  .+.+.+.+ +.||....+..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~--~~~l~~~l~~~gf~~~~~~~  148 (170)
T 3q87_B           95 PIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANR--PKEVLARLEERGYGTRILKV  148 (170)
T ss_dssp             TTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGC--HHHHHHHHHHTTCEEEEEEE
T ss_pred             ccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCC--HHHHHHHHHHCCCcEEEEEe
Confidence                   1123344443334 99999887654432  34555666 45898776654

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=96.17  E-value=0.0041  Score=44.69  Aligned_cols=81  Identities=10%  Similarity=0.094  Sum_probs=52.1

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc-cchHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-HLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~-~~~~~L   82 (140)
                      +++|+++|. +.+++..++|++.|+..           .++++.     +... .....+||+|++.+++-.= +.-..+
T Consensus        73 ~a~~~A~Di~~~~leiar~~~~~~g~~-----------~~v~~~-----d~~~-~~~~~~~DvVLa~k~LHlL~~~~~al  135 (200)
T 3fzg_A           73 KIIYHAYDIDRAEIAFLSSIIGKLKTT-----------IKYRFL-----NKES-DVYKGTYDVVFLLKMLPVLKQQDVNI  135 (200)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHSCCS-----------SEEEEE-----CCHH-HHTTSEEEEEEEETCHHHHHHTTCCH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhcCCC-----------ccEEEe-----cccc-cCCCCCcChhhHhhHHHhhhhhHHHH
Confidence            679999998 77999999999998752           356652     2211 1235679999999987532 222223


Q ss_pred             HHHHHHhcCCCeEEEEEEEecC
Q 032462           83 LQTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~R~  104 (140)
                      . -+.+.++|++ ++|+++.|.
T Consensus       136 ~-~v~~~L~pgg-vfISfptks  155 (200)
T 3fzg_A          136 L-DFLQLFHTQN-FVISFPIKS  155 (200)
T ss_dssp             H-HHHHTCEEEE-EEEEEECCC
T ss_pred             H-HHHHHhCCCC-EEEEeChHH
Confidence            3 3444455654 457777443

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=96.14  E-value=0.0095  Score=41.93  Aligned_cols=77  Identities=12%  Similarity=0.019  Sum_probs=55.3

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      .+|+..|. +..+...++|+..++.            .++.+..-+....  .+ ...+||+|+++.++..-      .+
T Consensus       103 ~~v~~vD~~~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~--~~-~~~~fD~v~~~~~~~~~------~~  161 (215)
T 2yxe_A          103 GLVVSIERIPELAEKAERTLRKLGY------------DNVIVIVGDGTLG--YE-PLAPYDRIYTTAAGPKI------PE  161 (215)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHHTC------------TTEEEEESCGGGC--CG-GGCCEEEEEESSBBSSC------CH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCC------------CCeEEEECCcccC--CC-CCCCeeEEEECCchHHH------HH
Confidence            69999998 8899999999987653            2366666555322  11 14579999998887642      24


Q ss_pred             HHHHhcCCCeEEEEEEEec
Q 032462           85 TIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R  103 (140)
                      .+..+++|+|.+++.....
T Consensus       162 ~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          162 PLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             HHHHTEEEEEEEEEEESSS
T ss_pred             HHHHHcCCCcEEEEEECCC
Confidence            6778889999998876543

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=96.09  E-value=0.0083  Score=43.54  Aligned_cols=96  Identities=14%  Similarity=0.124  Sum_probs=55.6

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHh---hccccc---------CCCC-----CCCCCceE-------------EEEeecCC
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWN---TSRISQ---------MNPG-----SDLLGSIQ-------------AVELDWGN   53 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N---~~~~~~---------~~~~-----~~~~~~v~-------------~~~LdWg~   53 (140)
                      +++|+.+|. +..+...+.|+..+   ......         ....     ......+.             +..-|+.+
T Consensus        77 ~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~  156 (250)
T 1o9g_A           77 LRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFD  156 (250)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTC
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhhhhhhhhhccccccccccceeeccccc
Confidence            468999998 88999999999877   321000         0000     00000133             66666654


Q ss_pred             Ccccc--ccCCCccEEEEeecccCc----------cchHHHHHHHHHhcCCCeEEEEEEE
Q 032462           54 EDHIK--AVAPPFDYIIGTDVVYAE----------HLLEPLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        54 ~~~~~--~~~~~~D~IlasDviY~~----------~~~~~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      .....  ....+||+|++. ..|..          +....+++.+.++++|+|.+++...
T Consensus       157 ~~~~~~~~~~~~fD~Iv~n-pp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  215 (250)
T 1o9g_A          157 PRALSAVLAGSAPDVVLTD-LPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDR  215 (250)
T ss_dssp             GGGHHHHHTTCCCSEEEEE-CCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred             ccccccccCCCCceEEEeC-CCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCc
Confidence            32100  023489999864 44432          2234778888888999999988433

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=96.08  E-value=0.011  Score=46.23  Aligned_cols=91  Identities=18%  Similarity=0.044  Sum_probs=54.5

Q ss_pred             CC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCC---CCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            5 GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS---DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         5 Ga-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~---~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      |+ +|++-|. ++.++.+++|++.|........+..   ....++++..-|..+..  .....+||+|+ .|--+   ..
T Consensus        70 ~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~--~~~~~~fD~I~-lDP~~---~~  143 (378)
T 2dul_A           70 PAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM--AERHRYFHFID-LDPFG---SP  143 (378)
T ss_dssp             SCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH--HHSTTCEEEEE-ECCSS---CC
T ss_pred             CCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH--HhccCCCCEEE-eCCCC---CH
Confidence            54 8999998 8899999999999932100000000   00112444443332211  11235799999 68732   23


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEE
Q 032462           80 EPLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      .+++....++++++|.+++.++
T Consensus       144 ~~~l~~a~~~lk~gG~l~vt~t  165 (378)
T 2dul_A          144 MEFLDTALRSAKRRGILGVTAT  165 (378)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHHHHHhcCCCCEEEEEee
Confidence            5777777778889998888763

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=96.07  E-value=0.014  Score=42.02  Aligned_cols=108  Identities=13%  Similarity=0.073  Sum_probs=69.7

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCc-cccccC--CCccEEEEeecccCccchH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAVA--PPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~-~~~~~~--~~~D~IlasDviY~~~~~~   80 (140)
                      |++|+..|. ++.+...++|++.++.           ..++.+..-++.+.. ..+...  .+||+|+. |..  .....
T Consensus        97 ~~~v~~iD~~~~~~~~a~~~~~~~g~-----------~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~-d~~--~~~~~  162 (232)
T 3cbg_A           97 DGQIIACDQDPNATAIAKKYWQKAGV-----------AEKISLRLGPALATLEQLTQGKPLPEFDLIFI-DAD--KRNYP  162 (232)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEESCHHHHHHHHHTSSSCCCEEEEEE-CSC--GGGHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEE-CCC--HHHHH
Confidence            569999998 8899999999988764           235666554443211 111112  68999984 322  34567


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHHH--hcCeEEeecC
Q 032462           81 PLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWK--SNFNVKLVPK  126 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~R~~------------~~~~~F~~~~~--~~f~v~~v~~  126 (140)
                      .++..+..+++|+|.+++....+..            .....|.+.+.  ..|....+|.
T Consensus       163 ~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~  222 (232)
T 3cbg_A          163 RYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPL  222 (232)
T ss_dssp             HHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECS
T ss_pred             HHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEEc
Confidence            7888888899999999885443321            12467777773  3566666654

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=96.06  E-value=0.013  Score=46.34  Aligned_cols=81  Identities=16%  Similarity=0.134  Sum_probs=51.7

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEE------eecccCc--
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIG------TDVVYAE--   76 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ila------sDviY~~--   76 (140)
                      ++|+..|. +..+..+++|++.++.             ++.+...|..+.... ....+||+|+.      ..++...  
T Consensus       271 ~~v~a~D~~~~~l~~~~~~~~~~g~-------------~~~~~~~D~~~~~~~-~~~~~fD~Vl~D~Pcsg~g~~~~~p~  336 (429)
T 1sqg_A          271 AQVVAVDIDEQRLSRVYDNLKRLGM-------------KATVKQGDGRYPSQW-CGEQQFDRILLDAPCSATGVIRRHPD  336 (429)
T ss_dssp             CEEEEEESSTTTHHHHHHHHHHTTC-------------CCEEEECCTTCTHHH-HTTCCEEEEEEECCCCCGGGTTTCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHHcCC-------------CeEEEeCchhhchhh-cccCCCCEEEEeCCCCcccccCCCcc
Confidence            69999998 7899999999998763             235555555443210 11357999985      1222111  


Q ss_pred             -------cch-------HHHHHHHHHhcCCCeEEEEEE
Q 032462           77 -------HLL-------EPLLQTIFALSGPKTTILLGY  100 (140)
Q Consensus        77 -------~~~-------~~L~~tl~~ll~~~~~~~~~~  100 (140)
                             +.+       ..++..+..+++|+|.++++.
T Consensus       337 ~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst  374 (429)
T 1sqg_A          337 IKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  374 (429)
T ss_dssp             HHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             hhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                   111       356666667788999887765

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=96.05  E-value=0.0042  Score=45.33  Aligned_cols=106  Identities=16%  Similarity=0.050  Sum_probs=71.8

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccccc-----CCCccEEEEeecccCccc
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV-----APPFDYIIGTDVVYAEHL   78 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~-----~~~~D~IlasDviY~~~~   78 (140)
                      |++|+..|. ++.+...++|++.++.           ..++++..-|..+.  .+..     ..+||+|+.. .  ....
T Consensus        85 ~~~v~~iD~~~~~~~~a~~~~~~~g~-----------~~~i~~~~gda~~~--l~~~~~~~~~~~fD~V~~d-~--~~~~  148 (242)
T 3r3h_A           85 DGQVITCDINEGWTKHAHPYWREAKQ-----------EHKIKLRLGPALDT--LHSLLNEGGEHQFDFIFID-A--DKTN  148 (242)
T ss_dssp             TCEEEEEECCCSSCCCSHHHHHHTTC-----------TTTEEEEESCHHHH--HHHHHHHHCSSCEEEEEEE-S--CGGG
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHH--HHHHhhccCCCCEeEEEEc-C--ChHH
Confidence            679999998 7889999999998764           24667666444321  1111     4689999753 2  2455


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHHH--hcCeEEeecC
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWK--SNFNVKLVPK  126 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~R~~------------~~~~~F~~~~~--~~f~v~~v~~  126 (140)
                      ...+++.+..+++|+|.+++....+..            .....|.+.+.  ..|+...+|.
T Consensus       149 ~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~  210 (242)
T 3r3h_A          149 YLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAI  210 (242)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             hHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEc
Confidence            667788888899999999875443321            23567888874  3677666664

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=96.02  E-value=0.0058  Score=43.52  Aligned_cols=76  Identities=8%  Similarity=0.005  Sum_probs=52.6

Q ss_pred             cCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEE-eecccCc---c
Q 032462            3 LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIG-TDVVYAE---H   77 (140)
Q Consensus         3 ~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ila-sDviY~~---~   77 (140)
                      ..|.+|+..|. +.++..++++.                 .++.+...|..+.+   . ..+||+|++ .+++..-   +
T Consensus        60 ~~~~~v~~~D~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~~---~-~~~~D~v~~~~~~~~~~~~~~  118 (239)
T 3bxo_A           60 KEFGDTAGLELSEDMLTHARKRL-----------------PDATLHQGDMRDFR---L-GRKFSAVVSMFSSVGYLKTTE  118 (239)
T ss_dssp             HHHSEEEEEESCHHHHHHHHHHC-----------------TTCEEEECCTTTCC---C-SSCEEEEEECTTGGGGCCSHH
T ss_pred             HhCCcEEEEeCCHHHHHHHHHhC-----------------CCCEEEECCHHHcc---c-CCCCcEEEEcCchHhhcCCHH
Confidence            34568999998 77888887763                 12455555554432   1 468999995 4465432   4


Q ss_pred             chHHHHHHHHHhcCCCeEEEEE
Q 032462           78 LLEPLLQTIFALSGPKTTILLG   99 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~   99 (140)
                      ....+++.+.++++|+|.+++.
T Consensus       119 ~~~~~l~~~~~~L~pgG~l~~~  140 (239)
T 3bxo_A          119 ELGAAVASFAEHLEPGGVVVVE  140 (239)
T ss_dssp             HHHHHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHHHHHhcCCCeEEEEE
Confidence            5677888888889999988875

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=96.01  E-value=0.017  Score=44.68  Aligned_cols=29  Identities=17%  Similarity=0.035  Sum_probs=24.3

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhc
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTS   29 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~   29 (140)
                      ||+.+.+|+..|. ++.+..+++|++.|+.
T Consensus       231 la~~~~~V~gvd~~~~ai~~a~~n~~~ng~  260 (369)
T 3bt7_A          231 LARNFDRVLATEIAKPSVAAAQYNIAANHI  260 (369)
T ss_dssp             HGGGSSEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred             HHhcCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            3554569999998 8899999999999874

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=96.00  E-value=0.039  Score=41.58  Aligned_cols=94  Identities=9%  Similarity=0.032  Sum_probs=57.5

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCc---ccc--ccCCCccEEEEeeccc---C
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HIK--AVAPPFDYIIGTDVVY---A   75 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~---~~~--~~~~~~D~IlasDviY---~   75 (140)
                      |++|+.+|. +.++...+...........      ...-.+....-+-..+.   ..+  ....+||+|++.-++.   +
T Consensus        71 ~~~v~GiD~S~~~l~~A~~~~~~~~~~~~------~~~~~~~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~  144 (302)
T 2vdw_A           71 IALLVATDPDADAIARGNERYNKLNSGIK------TKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFH  144 (302)
T ss_dssp             CSEEEEEESCHHHHHHHHHHHHHHCC----------CCCEEEEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCS
T ss_pred             CCeEEEEECCHHHHHHHHHHHHhcccccc------ccccccchhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCC
Confidence            469999998 7899988876654321100      00001222222221110   011  1246899999998873   3


Q ss_pred             ccchHHHHHHHHHhcCCCeEEEEEEEecC
Q 032462           76 EHLLEPLLQTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        76 ~~~~~~L~~tl~~ll~~~~~~~~~~~~R~  104 (140)
                      ++....+++.+.++++|+|.++++...+.
T Consensus       145 ~~~~~~~l~~~~r~LkpGG~~i~~~~~~~  173 (302)
T 2vdw_A          145 PRHYATVMNNLSELTASGGKVLITTMDGD  173 (302)
T ss_dssp             TTTHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence            44568899999999999999988877543

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=95.97  E-value=0.009  Score=43.68  Aligned_cols=80  Identities=13%  Similarity=0.003  Sum_probs=56.8

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccccc------CCCccEEEEeecccCcc
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV------APPFDYIIGTDVVYAEH   77 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~------~~~~D~IlasDviY~~~   77 (140)
                      |++|+..|. +..+...++|++.++.           ..++++..-+..+.  .+..      ..+||+|+. |.  ...
T Consensus       104 ~~~v~~iD~s~~~~~~a~~~~~~~g~-----------~~~i~~~~gda~~~--l~~l~~~~~~~~~fD~V~~-d~--~~~  167 (247)
T 1sui_A          104 DGKILAMDINKENYELGLPVIKKAGV-----------DHKIDFREGPALPV--LDEMIKDEKNHGSYDFIFV-DA--DKD  167 (247)
T ss_dssp             TCEEEEEESCCHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHH--HHHHHHSGGGTTCBSEEEE-CS--CST
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHcCC-----------CCCeEEEECCHHHH--HHHHHhccCCCCCEEEEEE-cC--chH
Confidence            679999998 8899999999988653           24566655444321  1111      468999985 32  234


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEE
Q 032462           78 LLEPLLQTIFALSGPKTTILLGY  100 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~  100 (140)
                      ....++..+..+++|+|.+++-.
T Consensus       168 ~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          168 NYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             THHHHHHHHHHHBCTTCCEEEEC
T ss_pred             HHHHHHHHHHHhCCCCeEEEEec
Confidence            56788888889999999988754

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=95.95  E-value=0.065  Score=39.09  Aligned_cols=83  Identities=14%  Similarity=0.042  Sum_probs=47.5

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      .+|+..|. +..+..+.+..+..              .++....-|=..+........+||+|+ +|+-. +.....|..
T Consensus       102 G~V~avD~s~~~l~~l~~~a~~r--------------~nv~~i~~Da~~~~~~~~~~~~~D~I~-~d~a~-~~~~~il~~  165 (232)
T 3id6_C          102 GKAYGVEFSPRVVRELLLVAQRR--------------PNIFPLLADARFPQSYKSVVENVDVLY-VDIAQ-PDQTDIAIY  165 (232)
T ss_dssp             SEEEEEECCHHHHHHHHHHHHHC--------------TTEEEEECCTTCGGGTTTTCCCEEEEE-ECCCC-TTHHHHHHH
T ss_pred             CEEEEEECcHHHHHHHHHHhhhc--------------CCeEEEEcccccchhhhccccceEEEE-ecCCC-hhHHHHHHH
Confidence            49999998 66665444333221              234444333222211112246899997 46543 555666777


Q ss_pred             HHHHhcCCCeEEEEEEEecC
Q 032462           85 TIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R~  104 (140)
                      .+.++|+|+|.++++.+.+.
T Consensus       166 ~~~~~LkpGG~lvisik~~~  185 (232)
T 3id6_C          166 NAKFFLKVNGDMLLVIKARS  185 (232)
T ss_dssp             HHHHHEEEEEEEEEEEC---
T ss_pred             HHHHhCCCCeEEEEEEccCC
Confidence            77779999999998865443

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=95.92  E-value=0.0052  Score=44.24  Aligned_cols=77  Identities=17%  Similarity=0.186  Sum_probs=54.1

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      .+|+..|. +..+...++|+..++.            .++.+..-|...+  .+ ...+||+|+.+..+..      +..
T Consensus       115 ~~v~~vD~~~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~--~~-~~~~fD~Ii~~~~~~~------~~~  173 (235)
T 1jg1_A          115 TDVYTIERIPELVEFAKRNLERAGV------------KNVHVILGDGSKG--FP-PKAPYDVIIVTAGAPK------IPE  173 (235)
T ss_dssp             SCEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEESCGGGC--CG-GGCCEEEEEECSBBSS------CCH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCC------------CCcEEEECCcccC--CC-CCCCccEEEECCcHHH------HHH
Confidence            78999997 8899999999987653            2366666665211  21 1346999998876542      224


Q ss_pred             HHHHhcCCCeEEEEEEEec
Q 032462           85 TIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R  103 (140)
                      .+...++|+|.+++....+
T Consensus       174 ~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          174 PLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             HHHHTEEEEEEEEEEECSS
T ss_pred             HHHHhcCCCcEEEEEEecC
Confidence            5677889999999887654

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=95.89  E-value=0.032  Score=42.14  Aligned_cols=104  Identities=16%  Similarity=0.044  Sum_probs=60.4

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc-----ch
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----LL   79 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~-----~~   79 (140)
                      .+|++.|. ++++...++|+.......        ...++++..-|-.+.  .+....+||+|+. |......     ..
T Consensus       120 ~~v~~vDid~~~i~~ar~~~~~~~~~~--------~~~rv~v~~~Da~~~--l~~~~~~fD~Ii~-d~~~~~~~~~~l~~  188 (304)
T 2o07_A          120 ESVVQCEIDEDVIQVSKKFLPGMAIGY--------SSSKLTLHVGDGFEF--MKQNQDAFDVIIT-DSSDPMGPAESLFK  188 (304)
T ss_dssp             CEEEEEESCHHHHHHHHHHCHHHHGGG--------GCTTEEEEESCHHHH--HHTCSSCEEEEEE-ECC-----------
T ss_pred             CEEEEEECCHHHHHHHHHHhHHhhccc--------CCCcEEEEECcHHHH--HhhCCCCceEEEE-CCCCCCCcchhhhH
Confidence            59999998 889999999987521111        124566554332111  1122468999997 5533211     23


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEe--cChhHHHHHHHHHHhcCe
Q 032462           80 EPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFN  120 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~--R~~~~~~~F~~~~~~~f~  120 (140)
                      ..+++.+.++++|+|.+++-...  +.........+.+++.|.
T Consensus       189 ~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~  231 (304)
T 2o07_A          189 ESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFP  231 (304)
T ss_dssp             CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhCC
Confidence            45788888999999999876543  233223344444444554

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=95.86  E-value=0.079  Score=45.86  Aligned_cols=93  Identities=11%  Similarity=-0.021  Sum_probs=64.1

Q ss_pred             CccCC---CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc
Q 032462            1 MALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE   76 (140)
Q Consensus         1 lA~lG---a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~   76 (140)
                      ||+.|   ++|+..|. +..+...++++......-.      ....++.+..-|..+.+   .....||+|++.+++..=
T Consensus       739 LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr------~gl~nVefiqGDa~dLp---~~d~sFDlVV~~eVLeHL  809 (950)
T 3htx_A          739 LLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEA------CNVKSATLYDGSILEFD---SRLHDVDIGTCLEVIEHM  809 (950)
T ss_dssp             HTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTC------SSCSEEEEEESCTTSCC---TTSCSCCEEEEESCGGGS
T ss_pred             HHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhh------cCCCceEEEECchHhCC---cccCCeeEEEEeCchhhC
Confidence            35666   69999998 7899999988775422100      11246777766665432   235789999999999763


Q ss_pred             c--chHHHHHHHHHhcCCCeEEEEEEEec
Q 032462           77 H--LLEPLLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        77 ~--~~~~L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      .  ....+++.+..+++|+ .++++...+
T Consensus       810 ~dp~l~~~L~eI~RvLKPG-~LIISTPN~  837 (950)
T 3htx_A          810 EEDQACEFGEKVLSLFHPK-LLIVSTPNY  837 (950)
T ss_dssp             CHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred             ChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence            3  3446888889999998 777766544

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=95.86  E-value=0.0097  Score=44.98  Aligned_cols=75  Identities=20%  Similarity=0.081  Sum_probs=54.5

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      ++|+..|. ++.+...++|++.++.            .++.+..-|..+...   ...+||+|+....+..-      .+
T Consensus       101 ~~v~gvD~s~~~~~~a~~~~~~~g~------------~~v~~~~~d~~~~~~---~~~~fD~Iv~~~~~~~~------~~  159 (317)
T 1dl5_A          101 GLVVSVEYSRKICEIAKRNVERLGI------------ENVIFVCGDGYYGVP---EFSPYDVIFVTVGVDEV------PE  159 (317)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEESCGGGCCG---GGCCEEEEEECSBBSCC------CH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCC------------CCeEEEECChhhccc---cCCCeEEEEEcCCHHHH------HH
Confidence            35999998 8899999999988753            237777777654321   23579999988776432      25


Q ss_pred             HHHHhcCCCeEEEEEEE
Q 032462           85 TIFALSGPKTTILLGYE  101 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~  101 (140)
                      .+..+++|+|.+++...
T Consensus       160 ~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          160 TWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             HHHHHEEEEEEEEEEBC
T ss_pred             HHHHhcCCCcEEEEEEC
Confidence            67778899999888643

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=95.85  E-value=0.034  Score=43.08  Aligned_cols=100  Identities=14%  Similarity=0.164  Sum_probs=62.6

Q ss_pred             ccCCC--EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc-
Q 032462            2 ALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-   77 (140)
Q Consensus         2 A~lGa--~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~-   77 (140)
                      |+.|.  +|+..|. +.++...+.|++.++.           ..++.+..-|..+.+   .....||+|++ |.-|... 
T Consensus       236 a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl-----------~~~i~~~~~D~~~~~---~~~~~fD~Ii~-npPyg~r~  300 (373)
T 3tm4_A          236 ALRRYSGEIIGIEKYRKHLIGAEMNALAAGV-----------LDKIKFIQGDATQLS---QYVDSVDFAIS-NLPYGLKI  300 (373)
T ss_dssp             HHTTCCSCEEEEESCHHHHHHHHHHHHHTTC-----------GGGCEEEECCGGGGG---GTCSCEEEEEE-ECCCC---
T ss_pred             HHhCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----------CCceEEEECChhhCC---cccCCcCEEEE-CCCCCccc
Confidence            45565  8999998 8899999999998864           245666666655432   22468999887 6666532 


Q ss_pred             --------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEe
Q 032462           78 --------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKL  123 (140)
Q Consensus        78 --------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~  123 (140)
                              +...+++.+++.+ ++..+++..   +.   ..|.+.+ +.||.+.+
T Consensus       301 ~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~~---~~---~~~~~~~~~~G~~~~~  348 (373)
T 3tm4_A          301 GKKSMIPDLYMKFFNELAKVL-EKRGVFITT---EK---KAIEEAIAENGFEIIH  348 (373)
T ss_dssp             ---CCHHHHHHHHHHHHHHHE-EEEEEEEES---CH---HHHHHHHHHTTEEEEE
T ss_pred             CcchhHHHHHHHHHHHHHHHc-CCeEEEEEC---CH---HHHHHHHHHcCCEEEE
Confidence                    2366778888777 444444432   22   2333344 34776543

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=95.84  E-value=0.0041  Score=48.59  Aligned_cols=82  Identities=10%  Similarity=0.125  Sum_probs=56.5

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCc--cccccCCCccEEEEeecccCccc
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED--HIKAVAPPFDYIIGTDVVYAEHL   78 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~--~~~~~~~~~D~IlasDviY~~~~   78 (140)
                      +..|.+|+..|. +..+...+++   +..                ...-.+....  ..+....+||+|++..++..-..
T Consensus       126 ~~~g~~v~gvD~s~~~~~~a~~~---~~~----------------~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~d  186 (416)
T 4e2x_A          126 QEAGVRHLGFEPSSGVAAKAREK---GIR----------------VRTDFFEKATADDVRRTEGPANVIYAANTLCHIPY  186 (416)
T ss_dssp             HHTTCEEEEECCCHHHHHHHHTT---TCC----------------EECSCCSHHHHHHHHHHHCCEEEEEEESCGGGCTT
T ss_pred             HHcCCcEEEECCCHHHHHHHHHc---CCC----------------cceeeechhhHhhcccCCCCEEEEEECChHHhcCC
Confidence            456889999998 6777776654   111                0000111110  11112478999999999988878


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEe
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~  102 (140)
                      ...+++.+.++++|+|.+++....
T Consensus       187 ~~~~l~~~~r~LkpgG~l~i~~~~  210 (416)
T 4e2x_A          187 VQSVLEGVDALLAPDGVFVFEDPY  210 (416)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHcCCCeEEEEEeCC
Confidence            889999999999999999987653

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=95.78  E-value=0.14  Score=36.95  Aligned_cols=90  Identities=4%  Similarity=-0.072  Sum_probs=57.5

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccc------
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL------   78 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~------   78 (140)
                      ++|+..|. +.++..+++|++.|.......    ....++.+..-|..+.-........+|.|+..   +.+..      
T Consensus        74 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~----~~~~nv~~~~~D~~~~l~~~~~~~~~d~v~~~---~p~p~~k~~~~  146 (246)
T 2vdv_E           74 DLILGMEIRVQVTNYVEDRIIALRNNTASK----HGFQNINVLRGNAMKFLPNFFEKGQLSKMFFC---FPDPHFKQRKH  146 (246)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHHHHTC-CC----STTTTEEEEECCTTSCGGGTSCTTCEEEEEEE---SCCCC------
T ss_pred             CCEEEEEcCHHHHHHHHHHHHHHhhccccc----cCCCcEEEEeccHHHHHHHhccccccCEEEEE---CCCcccccchh
Confidence            48999997 789999999999885421100    01145777766665421100124578888743   22211      


Q ss_pred             -----hHHHHHHHHHhcCCCeEEEEEEEe
Q 032462           79 -----LEPLLQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        79 -----~~~L~~tl~~ll~~~~~~~~~~~~  102 (140)
                           ...++..+.++++|+|.+++....
T Consensus       147 ~~r~~~~~~l~~~~~~LkpgG~l~~~td~  175 (246)
T 2vdv_E          147 KARIITNTLLSEYAYVLKEGGVVYTITDV  175 (246)
T ss_dssp             CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             HHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence                 158999999999999999886543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=95.70  E-value=0.042  Score=42.05  Aligned_cols=101  Identities=12%  Similarity=0.011  Sum_probs=64.6

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-cCCCccEEEEeecc---cCcc--
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDVV---YAEH--   77 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-~~~~~D~IlasDvi---Y~~~--   77 (140)
                      |++|++.|. +.++...++|+..+.            ..++++..-|-.+.  ... ...+||+||. |+.   +.+.  
T Consensus       113 ~~~v~~VEidp~vi~~Ar~~~~~~~------------~~rv~v~~~Da~~~--l~~~~~~~fDvIi~-D~~~~~~~~~~L  177 (317)
T 3gjy_A          113 QSRNTVVELDAELARLSREWFDIPR------------APRVKIRVDDARMV--AESFTPASRDVIIR-DVFAGAITPQNF  177 (317)
T ss_dssp             TCEEEEEESCHHHHHHHHHHSCCCC------------TTTEEEEESCHHHH--HHTCCTTCEEEEEE-CCSTTSCCCGGG
T ss_pred             CcEEEEEECCHHHHHHHHHhccccC------------CCceEEEECcHHHH--HhhccCCCCCEEEE-CCCCccccchhh
Confidence            669999998 889999999875431            24555554332211  111 1468999996 432   2222  


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEEEecCh-hHHHHHHHHHHhcCe
Q 032462           78 LLEPLLQTIFALSGPKTTILLGYEIRST-SVHEQMLQMWKSNFN  120 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~~~R~~-~~~~~F~~~~~~~f~  120 (140)
                      ....+++.+++.|+|+|.+++-...... ......++.+++.|.
T Consensus       178 ~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~  221 (317)
T 3gjy_A          178 TTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFE  221 (317)
T ss_dssp             SBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCS
T ss_pred             hHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCC
Confidence            1267889999999999998776654332 234566677777775

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=95.69  E-value=0.077  Score=38.40  Aligned_cols=102  Identities=6%  Similarity=0.002  Sum_probs=62.8

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc------
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH------   77 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~------   77 (140)
                      +++|+..|. +.++...++|++.......      ....++++..-|..+.-........||.|+..   |...      
T Consensus        70 ~~~v~GiDis~~~l~~A~~~~~~l~~~~~------~~~~nv~~~~~d~~~~l~~~~~~~~~D~v~~~---~~dp~~k~~h  140 (235)
T 3ckk_A           70 DTLILGLEIRVKVSDYVQDRIRALRAAPA------GGFQNIACLRSNAMKHLPNFFYKGQLTKMFFL---FPDPHFKRTK  140 (235)
T ss_dssp             TSEEEEEESCHHHHHHHHHHHHHHHHSTT------CCCTTEEEEECCTTTCHHHHCCTTCEEEEEEE---SCC-------
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHHHHHHh------cCCCeEEEEECcHHHhhhhhCCCcCeeEEEEe---CCCchhhhhh
Confidence            468999998 8899999999875321100      01246777776665421100124679988742   2211      


Q ss_pred             -----chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHh
Q 032462           78 -----LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS  117 (140)
Q Consensus        78 -----~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~  117 (140)
                           ..+.+++.+.++|+|+|.+++......  ....+.+.+.+
T Consensus       141 ~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~--~~~~~~~~l~~  183 (235)
T 3ckk_A          141 HKWRIISPTLLAEYAYVLRVGGLVYTITDVLE--LHDWMCTHFEE  183 (235)
T ss_dssp             ----CCCHHHHHHHHHHEEEEEEEEEEESCHH--HHHHHHHHHHT
T ss_pred             hhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHH--HHHHHHHHHHH
Confidence                 125799999999999999998876442  23344555543

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=95.68  E-value=0.016  Score=41.15  Aligned_cols=80  Identities=10%  Similarity=0.065  Sum_probs=55.8

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      +..|.+|+..|. +..+..+++|+..+.              ++.+...|..+..  + ...+||+|++..+++.-    
T Consensus        89 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~--------------~v~~~~~d~~~~~--~-~~~~fD~v~~~~~~~~~----  147 (231)
T 1vbf_A           89 AEIVDKVVSVEINEKMYNYASKLLSYYN--------------NIKLILGDGTLGY--E-EEKPYDRVVVWATAPTL----  147 (231)
T ss_dssp             HHHSSEEEEEESCHHHHHHHHHHHTTCS--------------SEEEEESCGGGCC--G-GGCCEEEEEESSBBSSC----
T ss_pred             HHHcCEEEEEeCCHHHHHHHHHHHhhcC--------------CeEEEECCccccc--c-cCCCccEEEECCcHHHH----
Confidence            345689999998 889999998875432              4566665554421  1 24689999999887632    


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEecC
Q 032462           81 PLLQTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~R~  104 (140)
                        ...+..+++|+|.+++......
T Consensus       148 --~~~~~~~L~pgG~l~~~~~~~~  169 (231)
T 1vbf_A          148 --LCKPYEQLKEGGIMILPIGVGR  169 (231)
T ss_dssp             --CHHHHHTEEEEEEEEEEECSSS
T ss_pred             --HHHHHHHcCCCcEEEEEEcCCC
Confidence              2457778899999988866443

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=95.65  E-value=0.013  Score=44.56  Aligned_cols=105  Identities=12%  Similarity=0.011  Sum_probs=60.8

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC---c-cch
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA---E-HLL   79 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~---~-~~~   79 (140)
                      +.+|++.|. +.++...++|+..+....        ...++++..-|..+.  .+....+||+|+. |..-.   . .+.
T Consensus       132 ~~~v~~vDid~~~i~~Ar~~~~~~~~~~--------~~~rv~~~~~D~~~~--l~~~~~~fD~Ii~-d~~~~~~~~~~l~  200 (314)
T 2b2c_A          132 VEKVTMCEIDEMVIDVAKKFLPGMSCGF--------SHPKLDLFCGDGFEF--LKNHKNEFDVIIT-DSSDPVGPAESLF  200 (314)
T ss_dssp             CCEEEEECSCHHHHHHHHHHCTTTSGGG--------GCTTEEEECSCHHHH--HHHCTTCEEEEEE-CCC----------
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHhcccc--------CCCCEEEEEChHHHH--HHhcCCCceEEEE-cCCCCCCcchhhh
Confidence            359999998 889999999886532111        124566655544321  1123568999995 54211   1 122


Q ss_pred             -HHHHHHHHHhcCCCeEEEEEEEec--ChhHHHHHHHHHHhcCe
Q 032462           80 -EPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFN  120 (140)
Q Consensus        80 -~~L~~tl~~ll~~~~~~~~~~~~R--~~~~~~~F~~~~~~~f~  120 (140)
                       ..+++.+.++++|+|.+++.....  .........+.+++.|.
T Consensus       201 t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~  244 (314)
T 2b2c_A          201 GQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFP  244 (314)
T ss_dssp             ---HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCC
Confidence             677888889999999998765322  22223444444555554

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=95.60  E-value=0.01  Score=42.15  Aligned_cols=84  Identities=12%  Similarity=0.132  Sum_probs=56.8

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccc-cccCCCccEEEEeecccCccchHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-KAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~-~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      ++|+..|. ++.+...++|+..+.....       ...++.+...|..+.... .....+||+|+....+.      .++
T Consensus       110 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~-------~~~~v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~------~~~  176 (227)
T 2pbf_A          110 SYVIGLERVKDLVNFSLENIKRDKPELL-------KIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASAS------ELP  176 (227)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHCGGGG-------SSTTEEEEECCGGGCCHHHHHHHCCEEEEEECSBBS------SCC
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCcccc-------ccCCEEEEECChHhcccccCccCCCcCEEEECCchH------HHH
Confidence            49999998 8899999999988752100       124567766665542100 01246799998876654      245


Q ss_pred             HHHHHhcCCCeEEEEEEEe
Q 032462           84 QTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~~  102 (140)
                      ..+..+++|+|.+++....
T Consensus       177 ~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          177 EILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             HHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHhcCCCcEEEEEEcc
Confidence            7777888999999888764

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=95.58  E-value=0.069  Score=39.58  Aligned_cols=85  Identities=9%  Similarity=0.030  Sum_probs=62.5

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccc-------cc-cCCCccEEEEeecccC
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-------KA-VAPPFDYIIGTDVVYA   75 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~-------~~-~~~~~D~IlasDviY~   75 (140)
                      |++|+..|. +.++...++++..              ..++.+..-|-.+....       .. ....||+|+...+++.
T Consensus       104 ~~~v~~vD~sp~~l~~Ar~~~~~--------------~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~  169 (274)
T 2qe6_A          104 DARVVYVDIDPMVLTHGRALLAK--------------DPNTAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHY  169 (274)
T ss_dssp             TCEEEEEESSHHHHHHHHHHHTT--------------CTTEEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGG
T ss_pred             CCEEEEEECChHHHHHHHHhcCC--------------CCCeEEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhh
Confidence            679999998 8899999988732              13566666666543211       01 1247999999998876


Q ss_pred             -c-cchHHHHHHHHHhcCCCeEEEEEEEec
Q 032462           76 -E-HLLEPLLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        76 -~-~~~~~L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                       + +....+++.+.+.++|+|.++++....
T Consensus       170 ~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          170 LSPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             SCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             CCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence             3 347889999999999999999887665

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=95.54  E-value=0.045  Score=38.48  Aligned_cols=106  Identities=10%  Similarity=0.111  Sum_probs=63.7

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc-cch---
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-HLL---   79 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~-~~~---   79 (140)
                      |++|+..|. ++.+..+.++.+.+....        ...++.+..-|..+.+   ..... |.|.   +++.. ...   
T Consensus        51 ~~~v~gvD~s~~~l~~~~~~a~~~~~~~--------~~~~v~~~~~d~~~l~---~~~~~-d~v~---~~~~~~~~~~~~  115 (218)
T 3mq2_A           51 SRLVVALDADKSRMEKISAKAAAKPAKG--------GLPNLLYLWATAERLP---PLSGV-GELH---VLMPWGSLLRGV  115 (218)
T ss_dssp             TEEEEEEESCGGGGHHHHHHHTSCGGGT--------CCTTEEEEECCSTTCC---SCCCE-EEEE---EESCCHHHHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHhhhhc--------CCCceEEEecchhhCC---CCCCC-CEEE---EEccchhhhhhh
Confidence            679999998 777887666665543321        1246777777766532   11223 6665   33321 111   


Q ss_pred             ----HHHHHHHHHhcCCCeEEEEEEEec---------------ChhH-HHHHHHHH-HhcCeEEeec
Q 032462           80 ----EPLLQTIFALSGPKTTILLGYEIR---------------STSV-HEQMLQMW-KSNFNVKLVP  125 (140)
Q Consensus        80 ----~~L~~tl~~ll~~~~~~~~~~~~R---------------~~~~-~~~F~~~~-~~~f~v~~v~  125 (140)
                          ..+++.+.++++|+|.+++.....               .... .+.+.+.+ +.||.+..+.
T Consensus       116 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~~  182 (218)
T 3mq2_A          116 LGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADCR  182 (218)
T ss_dssp             HTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             hccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceeee
Confidence                677888888999999999876421               1111 22344555 4699987754

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=95.21  E-value=0.36  Score=36.25  Aligned_cols=101  Identities=9%  Similarity=0.057  Sum_probs=61.4

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPL   82 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~L   82 (140)
                      ++|++.|. +..++.++.|+..|+..             .++...|--..    ....+||++|...++=.=  +.-..+
T Consensus       157 a~y~a~DId~~~le~a~~~l~~~g~~-------------~~~~v~D~~~~----~p~~~~DvaL~lkti~~Le~q~kg~g  219 (281)
T 3lcv_B          157 TVYIASDIDARLVGFVDEALTRLNVP-------------HRTNVADLLED----RLDEPADVTLLLKTLPCLETQQRGSG  219 (281)
T ss_dssp             CEEEEEESBHHHHHHHHHHHHHTTCC-------------EEEEECCTTTS----CCCSCCSEEEETTCHHHHHHHSTTHH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHhcCCC-------------ceEEEeeeccc----CCCCCcchHHHHHHHHHhhhhhhHHH
Confidence            49999998 77999999999999752             34433333322    236789999999887542  233345


Q ss_pred             HHHHHHhcCCCeEEEEEEEe-----cChhH---HH-HHHHHH-HhcCeEEeec
Q 032462           83 LQTIFALSGPKTTILLGYEI-----RSTSV---HE-QMLQMW-KSNFNVKLVP  125 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~-----R~~~~---~~-~F~~~~-~~~f~v~~v~  125 (140)
                      ++.++. ++++ .++|+++.     |.+..   +. .|.+.+ ++|..++++.
T Consensus       220 ~~ll~a-L~~~-~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~~  270 (281)
T 3lcv_B          220 WEVIDI-VNSP-NIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLE  270 (281)
T ss_dssp             HHHHHH-SSCS-EEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHH-hCCC-CEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeeee
Confidence            544433 3444 45578887     44432   23 333434 4688777653

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=95.14  E-value=0.037  Score=39.16  Aligned_cols=82  Identities=21%  Similarity=0.136  Sum_probs=56.1

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      ++|+..|. +..+..+++|+..+.....       ...++.+...|.....   ....+||+|+....+      ..+++
T Consensus       103 ~~v~~vD~s~~~~~~a~~~~~~~~~~~~-------~~~~v~~~~~d~~~~~---~~~~~fD~i~~~~~~------~~~~~  166 (226)
T 1i1n_A          103 GKVIGIDHIKELVDDSVNNVRKDDPTLL-------SSGRVQLVVGDGRMGY---AEEAPYDAIHVGAAA------PVVPQ  166 (226)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHCTHHH-------HTSSEEEEESCGGGCC---GGGCCEEEEEECSBB------SSCCH
T ss_pred             cEEEEEeCCHHHHHHHHHHHHhhccccc-------CCCcEEEEECCcccCc---ccCCCcCEEEECCch------HHHHH
Confidence            59999998 8899999999987642100       0245677766665321   124579999877654      23446


Q ss_pred             HHHHhcCCCeEEEEEEEec
Q 032462           85 TIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R  103 (140)
                      .+.++++|+|.+++.....
T Consensus       167 ~~~~~LkpgG~lv~~~~~~  185 (226)
T 1i1n_A          167 ALIDQLKPGGRLILPVGPA  185 (226)
T ss_dssp             HHHHTEEEEEEEEEEESCT
T ss_pred             HHHHhcCCCcEEEEEEecC
Confidence            7778899999998876543

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=95.08  E-value=0.024  Score=45.50  Aligned_cols=103  Identities=12%  Similarity=0.090  Sum_probs=60.4

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecc-----------
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV-----------   73 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDvi-----------   73 (140)
                      ++|++.|. +..+..+++|++.++.            .++.+..-|-.+..  ......||+|+. |.=           
T Consensus       131 g~V~AvDis~~rl~~~~~n~~r~g~------------~nv~v~~~Da~~l~--~~~~~~FD~Il~-DaPCSg~G~~rr~p  195 (456)
T 3m4x_A          131 GLLVTNEIFPKRAKILSENIERWGV------------SNAIVTNHAPAELV--PHFSGFFDRIVV-DAPCSGEGMFRKDP  195 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHHTC------------SSEEEECCCHHHHH--HHHTTCEEEEEE-ECCCCCGGGTTTCH
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEeCCHHHhh--hhccccCCEEEE-CCCCCCccccccCH
Confidence            59999998 7899999999999874            24555443322111  112468999985 321           


Q ss_pred             ---cC--ccch-------HHHHHHHHHhcCCCeEEEEEEEecC----hhHHHHHHHHHHhcCeEEeec
Q 032462           74 ---YA--EHLL-------EPLLQTIFALSGPKTTILLGYEIRS----TSVHEQMLQMWKSNFNVKLVP  125 (140)
Q Consensus        74 ---Y~--~~~~-------~~L~~tl~~ll~~~~~~~~~~~~R~----~~~~~~F~~~~~~~f~v~~v~  125 (140)
                         +.  ++.+       ..++.....+++|+|.++.+.-.-.    ..+...|++.  .+|++..++
T Consensus       196 ~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~--~~~~l~~~~  261 (456)
T 3m4x_A          196 NAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVEN--YPVTIEEIP  261 (456)
T ss_dssp             HHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHH--SSEEEECCC
T ss_pred             HHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHh--CCCEEEecc
Confidence               11  1111       2556666677889888766443222    2234455543  246666554

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=94.99  E-value=0.082  Score=39.99  Aligned_cols=102  Identities=11%  Similarity=0.027  Sum_probs=58.4

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      .+|+..|. +..+...++|++..+..... +.......++.+..-|..+... +.....||+|+. |..    ....++.
T Consensus       131 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~l-n~~~~~~~~v~~~~~d~~~~~~-~~~~~~fD~V~~-~~~----~~~~~l~  203 (336)
T 2b25_A          131 GRVISFEVRKDHHDLAKKNYKHWRDSWKL-SHVEEWPDNVDFIHKDISGATE-DIKSLTFDAVAL-DML----NPHVTLP  203 (336)
T ss_dssp             CEEEEEESSHHHHHHHHHHHHHHHHHHTT-TCSSCCCCCEEEEESCTTCCC--------EEEEEE-CSS----STTTTHH
T ss_pred             ceEEEEeCCHHHHHHHHHHHHHhhccccc-ccccccCCceEEEECChHHccc-ccCCCCeeEEEE-CCC----CHHHHHH
Confidence            68999998 88999999999853210000 0000012467777666654321 112347999987 322    1223677


Q ss_pred             HHHHhcCCCeEEEEEEEecChhHHHHHHHHHH
Q 032462           85 TIFALSGPKTTILLGYEIRSTSVHEQMLQMWK  116 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~  116 (140)
                      .+.++++|+|.+++......  ....+++.++
T Consensus       204 ~~~~~LkpgG~lv~~~~~~~--~~~~~~~~l~  233 (336)
T 2b25_A          204 VFYPHLKHGGVCAVYVVNIT--QVIELLDGIR  233 (336)
T ss_dssp             HHGGGEEEEEEEEEEESSHH--HHHHHHHHHH
T ss_pred             HHHHhcCCCcEEEEEeCCHH--HHHHHHHHHH
Confidence            77888899999887665332  2456666653

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=94.90  E-value=0.059  Score=38.28  Aligned_cols=81  Identities=11%  Similarity=0.085  Sum_probs=54.8

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      .+|+..|. ++.+...++|+..+....-       ...++.+..-|..+.  .+ ...+||+|+....+..      +.+
T Consensus       115 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~-------~~~~v~~~~~d~~~~--~~-~~~~fD~I~~~~~~~~------~~~  178 (227)
T 1r18_A          115 TRIVGIEHQAELVRRSKANLNTDDRSML-------DSGQLLIVEGDGRKG--YP-PNAPYNAIHVGAAAPD------TPT  178 (227)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHHH-------HHTSEEEEESCGGGC--CG-GGCSEEEEEECSCBSS------CCH
T ss_pred             CEEEEEEcCHHHHHHHHHHHHhcCcccc-------CCCceEEEECCcccC--CC-cCCCccEEEECCchHH------HHH
Confidence            59999998 8899999999987651000       013566666665442  11 1357999998776542      336


Q ss_pred             HHHHhcCCCeEEEEEEEe
Q 032462           85 TIFALSGPKTTILLGYEI  102 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~  102 (140)
                      .+..+++|+|.+++....
T Consensus       179 ~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          179 ELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             HHHHTEEEEEEEEEEESC
T ss_pred             HHHHHhcCCCEEEEEEec
Confidence            777888999999887653

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=94.72  E-value=0.12  Score=38.13  Aligned_cols=101  Identities=7%  Similarity=-0.073  Sum_probs=60.5

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      |.+|++.|. +.+++..++|+.......        ..+++++.   .++....  . .+||+|+. |. .++.   .++
T Consensus        94 ~~~v~~veid~~~i~~ar~~~~~~~~~~--------~~~rv~~~---~~D~~~~--~-~~fD~Ii~-d~-~dp~---~~~  154 (262)
T 2cmg_A           94 DTHIDFVQADEKILDSFISFFPHFHEVK--------NNKNFTHA---KQLLDLD--I-KKYDLIFC-LQ-EPDI---HRI  154 (262)
T ss_dssp             SCEEEEECSCHHHHGGGTTTSTTHHHHH--------TCTTEEEE---SSGGGSC--C-CCEEEEEE-SS-CCCH---HHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHhhcccc--------CCCeEEEE---echHHHH--H-hhCCEEEE-CC-CChH---HHH
Confidence            578999998 788898888764321111        12345444   3433221  1 68999996 42 2222   378


Q ss_pred             HHHHHhcCCCeEEEEEEEecCh--hHHHHHHHHHHhcCeEEee
Q 032462           84 QTIFALSGPKTTILLGYEIRST--SVHEQMLQMWKSNFNVKLV  124 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~~R~~--~~~~~F~~~~~~~f~v~~v  124 (140)
                      +.+.+.|+|+|.+++.......  .......+.+++.|.....
T Consensus       155 ~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~  197 (262)
T 2cmg_A          155 DGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMP  197 (262)
T ss_dssp             HHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEE
Confidence            8888889999999876544321  2234445555666765443

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=94.62  E-value=0.21  Score=38.02  Aligned_cols=74  Identities=14%  Similarity=0.025  Sum_probs=51.7

Q ss_pred             CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch--HHH
Q 032462            5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL--EPL   82 (140)
Q Consensus         5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~--~~L   82 (140)
                      +.+|+..|.+.++...++                  ...+++...|..++  .    +.||+|+.+.++.+-.-.  ..+
T Consensus       212 ~~~~~~~D~~~~~~~a~~------------------~~~v~~~~~d~~~~--~----p~~D~v~~~~~lh~~~d~~~~~~  267 (352)
T 1fp2_A          212 KLKCIVFDRPQVVENLSG------------------SNNLTYVGGDMFTS--I----PNADAVLLKYILHNWTDKDCLRI  267 (352)
T ss_dssp             TCEEEEEECHHHHTTCCC------------------BTTEEEEECCTTTC--C----CCCSEEEEESCGGGSCHHHHHHH
T ss_pred             CCeEEEeeCHHHHhhccc------------------CCCcEEEeccccCC--C----CCccEEEeehhhccCCHHHHHHH
Confidence            458999998666543321                  12377777776542  2    249999999999864433  378


Q ss_pred             HHHHHHhcCC---CeEEEEEEEe
Q 032462           83 LQTIFALSGP---KTTILLGYEI  102 (140)
Q Consensus        83 ~~tl~~ll~~---~~~~~~~~~~  102 (140)
                      ++-+.+.++|   +|.+++....
T Consensus       268 l~~~~~~L~p~~~gG~l~i~e~~  290 (352)
T 1fp2_A          268 LKKCKEAVTNDGKRGKVTIIDMV  290 (352)
T ss_dssp             HHHHHHHHSGGGCCCEEEEEECE
T ss_pred             HHHHHHhCCCCCCCcEEEEEEee
Confidence            8888888999   9998887544

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=94.48  E-value=0.15  Score=33.76  Aligned_cols=81  Identities=11%  Similarity=0.051  Sum_probs=51.0

Q ss_pred             CceEEEEeecCCCcc---cc--ccCCCccEEEEeecccCccch-----------HHHHHHHHHhcCCCeEEEEEEEecCh
Q 032462           42 GSIQAVELDWGNEDH---IK--AVAPPFDYIIGTDVVYAEHLL-----------EPLLQTIFALSGPKTTILLGYEIRST  105 (140)
Q Consensus        42 ~~v~~~~LdWg~~~~---~~--~~~~~~D~IlasDviY~~~~~-----------~~L~~tl~~ll~~~~~~~~~~~~R~~  105 (140)
                      .++.+...|+.+.+.   .+  ....+||+|++..+++.....           ..+++.+.++++|+|.+++.......
T Consensus        62 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  141 (180)
T 1ej0_A           62 VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG  141 (180)
T ss_dssp             TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred             CcEEEEEcccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCc
Confidence            345666666655421   00  124689999987666543332           67888888899999999876554433


Q ss_pred             hHHHHHHHHHHhcCeEEee
Q 032462          106 SVHEQMLQMWKSNFNVKLV  124 (140)
Q Consensus       106 ~~~~~F~~~~~~~f~v~~v  124 (140)
                        ...+.+.++..|....+
T Consensus       142 --~~~~~~~~~~~~~~~~~  158 (180)
T 1ej0_A          142 --FDEYLREIRSLFTKVKV  158 (180)
T ss_dssp             --HHHHHHHHHHHEEEEEE
T ss_pred             --HHHHHHHHHHhhhhEEe
Confidence              35666666666664443

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=94.35  E-value=0.028  Score=46.00  Aligned_cols=62  Identities=18%  Similarity=0.073  Sum_probs=42.6

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA   75 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~   75 (140)
                      ||++||+|+-.|. +..+...+.....++.            .++..+.-+-.+-.. .....+||+|++.++++.
T Consensus        84 la~~ga~V~giD~~~~~i~~a~~~a~~~~~------------~~~~~~~~~~~~~~~-~~~~~~fD~v~~~e~~eh  146 (569)
T 4azs_A           84 LASKGATIVGIDFQQENINVCRALAEENPD------------FAAEFRVGRIEEVIA-ALEEGEFDLAIGLSVFHH  146 (569)
T ss_dssp             HHHTTCEEEEEESCHHHHHHHHHHHHTSTT------------SEEEEEECCHHHHHH-HCCTTSCSEEEEESCHHH
T ss_pred             HHhCCCEEEEECCCHHHHHHHHHHHHhcCC------------CceEEEECCHHHHhh-hccCCCccEEEECcchhc
Confidence            6889999999998 7788888877765532            245555444332110 112468999999999986

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=94.29  E-value=0.039  Score=39.95  Aligned_cols=104  Identities=9%  Similarity=0.119  Sum_probs=59.8

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccccc-CCCccEEEEeecccCccchHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV-APPFDYIIGTDVVYAEHLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~-~~~~D~IlasDviY~~~~~~~L   82 (140)
                      +++|+..|. ++.+...+     +.            ..++++..-|+.+....+.. ..+||+|+... .  +.....+
T Consensus       109 ~~~V~gvD~s~~~l~~a~-----~~------------~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~-~--~~~~~~~  168 (236)
T 2bm8_A          109 DCQVIGIDRDLSRCQIPA-----SD------------MENITLHQGDCSDLTTFEHLREMAHPLIFIDN-A--HANTFNI  168 (236)
T ss_dssp             CCEEEEEESCCTTCCCCG-----GG------------CTTEEEEECCSSCSGGGGGGSSSCSSEEEEES-S--CSSHHHH
T ss_pred             CCEEEEEeCChHHHHHHh-----cc------------CCceEEEECcchhHHHHHhhccCCCCEEEECC-c--hHhHHHH
Confidence            578999997 66655443     11            14577777676653111222 23799987533 2  2355667


Q ss_pred             HHHHHH-hcCCCeEEEEEEE-----ecChhHHHHHHHHHHhcCeEEeecCCC
Q 032462           83 LQTIFA-LSGPKTTILLGYE-----IRSTSVHEQMLQMWKSNFNVKLVPKAK  128 (140)
Q Consensus        83 ~~tl~~-ll~~~~~~~~~~~-----~R~~~~~~~F~~~~~~~f~v~~v~~~~  128 (140)
                      +..+.+ +++|+|.+++...     .........|++....+|.+..+....
T Consensus       169 l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~  220 (236)
T 2bm8_A          169 MKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDMLYANA  220 (236)
T ss_dssp             HHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEETTTTTS
T ss_pred             HHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEEcchhhcc
Confidence            777775 9999999988431     111223445555444478876554433

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=94.19  E-value=0.072  Score=38.66  Aligned_cols=73  Identities=7%  Similarity=-0.067  Sum_probs=50.1

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      |++|+..|. +..+...+++.                 .++.+..-++.+.   +.....||+|++.++       +..+
T Consensus       109 ~~~v~~vD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~---~~~~~~fD~v~~~~~-------~~~l  161 (269)
T 1p91_A          109 EITTFGLDVSKVAIKAAAKRY-----------------PQVTFCVASSHRL---PFSDTSMDAIIRIYA-------PCKA  161 (269)
T ss_dssp             TSEEEEEESCHHHHHHHHHHC-----------------TTSEEEECCTTSC---SBCTTCEEEEEEESC-------CCCH
T ss_pred             CCeEEEEeCCHHHHHHHHHhC-----------------CCcEEEEcchhhC---CCCCCceeEEEEeCC-------hhhH
Confidence            679999998 77888777653                 1234445555432   222468999998655       2346


Q ss_pred             HHHHHhcCCCeEEEEEEEecC
Q 032462           84 QTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~~R~  104 (140)
                      +.+.++++|+|.+++......
T Consensus       162 ~~~~~~L~pgG~l~~~~~~~~  182 (269)
T 1p91_A          162 EELARVVKPGGWVITATPGPR  182 (269)
T ss_dssp             HHHHHHEEEEEEEEEEEECTT
T ss_pred             HHHHHhcCCCcEEEEEEcCHH
Confidence            778888999999988876554

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=94.12  E-value=0.12  Score=41.61  Aligned_cols=104  Identities=13%  Similarity=0.091  Sum_probs=60.1

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEE-------------ee
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIG-------------TD   71 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ila-------------sD   71 (140)
                      ++|++.|. +..+..+++|++.++.            . +.+..-|..+..  ......||+|+.             .|
T Consensus       127 g~V~AvDis~~~l~~a~~n~~r~G~------------~-v~~~~~Da~~l~--~~~~~~FD~Il~D~PcSg~G~~rr~pd  191 (464)
T 3m6w_A          127 GLLLANEVDGKRVRGLLENVERWGA------------P-LAVTQAPPRALA--EAFGTYFHRVLLDAPCSGEGMFRKDRE  191 (464)
T ss_dssp             SEEEEECSCHHHHHHHHHHHHHHCC------------C-CEEECSCHHHHH--HHHCSCEEEEEEECCCCCGGGTTTCTT
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCC------------e-EEEEECCHHHhh--hhccccCCEEEECCCcCCccccccChH
Confidence            58999998 8899999999998864            2 444443322211  112568999984             23


Q ss_pred             cccC--ccch-------HHHHHHHHHhcCCCeEEEEEEEec-C---hhHHHHHHHHHHhcCeEEeec
Q 032462           72 VVYA--EHLL-------EPLLQTIFALSGPKTTILLGYEIR-S---TSVHEQMLQMWKSNFNVKLVP  125 (140)
Q Consensus        72 viY~--~~~~-------~~L~~tl~~ll~~~~~~~~~~~~R-~---~~~~~~F~~~~~~~f~v~~v~  125 (140)
                      ..|.  ++.+       ..++..+..+++|+|.++.+.-.- .   ..+...|++.. .+|++..++
T Consensus       192 ~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l~~~-~~~~l~~~~  257 (464)
T 3m6w_A          192 AARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKAH-PEFRLEDAR  257 (464)
T ss_dssp             SGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHC-TTEEEECCC
T ss_pred             HhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHHHHC-CCcEEEecc
Confidence            3322  1112       446666666788988887643322 1   22344444321 246666554

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=93.94  E-value=0.02  Score=41.62  Aligned_cols=111  Identities=14%  Similarity=0.076  Sum_probs=62.3

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      +..|+ +|+..|. +..+...++|.......         ...++     .+......+  ...||.+ .+|++|..  .
T Consensus        56 a~~g~~~V~gvDis~~ml~~a~~~~~~~~~~---------~~~~~-----~~~~~~~~~--~~~~d~~-~~D~v~~~--l  116 (232)
T 3opn_A           56 LQNGAKLVYALDVGTNQLAWKIRSDERVVVM---------EQFNF-----RNAVLADFE--QGRPSFT-SIDVSFIS--L  116 (232)
T ss_dssp             HHTTCSEEEEECSSCCCCCHHHHTCTTEEEE---------CSCCG-----GGCCGGGCC--SCCCSEE-EECCSSSC--G
T ss_pred             HhcCCCEEEEEcCCHHHHHHHHHhCcccccc---------ccceE-----EEeCHhHcC--cCCCCEE-EEEEEhhh--H
Confidence            45686 9999997 66777644432211100         00111     111111111  1235653 46777765  3


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEe---------------cCh----hHHHHHHHHH-HhcCeEEeecCCCCCc
Q 032462           80 EPLLQTIFALSGPKTTILLGYEI---------------RST----SVHEQMLQMW-KSNFNVKLVPKAKEST  131 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~---------------R~~----~~~~~F~~~~-~~~f~v~~v~~~~l~~  131 (140)
                      ..++..+.++++|+|.+++....               |..    .+.+.+.+.+ +.||.+..+..+.+.-
T Consensus       117 ~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~g  188 (232)
T 3opn_A          117 DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIKG  188 (232)
T ss_dssp             GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCB
T ss_pred             HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCCC
Confidence            78899999999999999876310               111    1234555666 4699998887665543

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=93.90  E-value=0.21  Score=40.13  Aligned_cols=81  Identities=16%  Similarity=0.181  Sum_probs=51.7

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEE----e---------e
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIG----T---------D   71 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ila----s---------D   71 (140)
                      ++|++.|. +..+..+++|++.++.            .++.+..-|..+...  .....||.|+.    |         |
T Consensus       143 g~V~avDis~~~l~~~~~n~~r~g~------------~nv~~~~~D~~~~~~--~~~~~fD~Il~D~PcSg~G~~~~~pd  208 (479)
T 2frx_A          143 GAILANEFSASRVKVLHANISRCGI------------SNVALTHFDGRVFGA--AVPEMFDAILLDAPCSGEGVVRKDPD  208 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHHTC------------CSEEEECCCSTTHHH--HSTTCEEEEEEECCCCCGGGGGTCTT
T ss_pred             CEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEeCCHHHhhh--hccccCCEEEECCCcCCcccccCCHH
Confidence            69999998 7899999999998864            245555544433211  12467999986    1         2


Q ss_pred             cccCc--c-------chHHHHHHHHHhcCCCeEEEEEE
Q 032462           72 VVYAE--H-------LLEPLLQTIFALSGPKTTILLGY  100 (140)
Q Consensus        72 viY~~--~-------~~~~L~~tl~~ll~~~~~~~~~~  100 (140)
                      ..+.-  +       ....++..+..+++|+|.++++.
T Consensus       209 ~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysT  246 (479)
T 2frx_A          209 ALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST  246 (479)
T ss_dssp             SSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            22211  1       12346666667888999887654

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=93.82  E-value=0.16  Score=38.36  Aligned_cols=64  Identities=17%  Similarity=0.153  Sum_probs=43.6

Q ss_pred             CccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEEEE---------------ecChh----HHHHHHHHH-HhcCeEE
Q 032462           63 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE---------------IRSTS----VHEQMLQMW-KSNFNVK  122 (140)
Q Consensus        63 ~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~---------------~R~~~----~~~~F~~~~-~~~f~v~  122 (140)
                      .||+|+ +|+.+.  ....++..+.++++|+|.+++..+               .|.+.    +.+.+.+.+ +.||.+.
T Consensus       151 ~fD~v~-~d~sf~--sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~  227 (291)
T 3hp7_A          151 LPSFAS-IDVSFI--SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVK  227 (291)
T ss_dssp             CCSEEE-ECCSSS--CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred             CCCEEE-EEeeHh--hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence            499988 587775  357888889999999999887611               12221    234555555 4699988


Q ss_pred             eecCCCC
Q 032462          123 LVPKAKE  129 (140)
Q Consensus       123 ~v~~~~l  129 (140)
                      .+..+.+
T Consensus       228 ~~~~spi  234 (291)
T 3hp7_A          228 GLDFSPI  234 (291)
T ss_dssp             EEEECSS
T ss_pred             EEEECCC
Confidence            7766555

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=93.64  E-value=0.23  Score=39.56  Aligned_cols=86  Identities=15%  Similarity=0.256  Sum_probs=52.8

Q ss_pred             CC-EEEEecc-hhHHHHH-------HHHHHHhhcccccCCCCCCCCCceEEEEe-ecCCCccccccCCCccEEEEeeccc
Q 032462            5 GC-NVITTDQ-IEVLPLL-------KRNVEWNTSRISQMNPGSDLLGSIQAVEL-DWGNEDHIKAVAPPFDYIIGTDVVY   74 (140)
Q Consensus         5 Ga-~Vv~TD~-~~vl~~l-------~~Ni~~N~~~~~~~~~~~~~~~~v~~~~L-dWg~~~~~~~~~~~~D~IlasDviY   74 (140)
                      |+ +|+..|. +..+...       +.|++.++..          ..++++..- ++.....++....+||+|++...++
T Consensus       265 g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~----------~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~  334 (433)
T 1u2z_A          265 GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR----------LNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLF  334 (433)
T ss_dssp             CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC----------CCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTC
T ss_pred             CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC----------CCceEEEEcCccccccccccccCCCCEEEEeCccc
Confidence            65 8999998 6677666       7777665421          135555432 2322111111135899999887776


Q ss_pred             CccchHHHHHHHHHhcCCCeEEEEEEE
Q 032462           75 AEHLLEPLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        75 ~~~~~~~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      .++ .+..+..+...++|+|.+++.-.
T Consensus       335 ~~d-~~~~L~el~r~LKpGG~lVi~d~  360 (433)
T 1u2z_A          335 DED-LNKKVEKILQTAKVGCKIISLKS  360 (433)
T ss_dssp             CHH-HHHHHHHHHTTCCTTCEEEESSC
T ss_pred             ccc-HHHHHHHHHHhCCCCeEEEEeec
Confidence            543 34455677777899999887643

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=93.34  E-value=0.32  Score=37.01  Aligned_cols=74  Identities=15%  Similarity=-0.014  Sum_probs=50.4

Q ss_pred             CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccc--hHHH
Q 032462            5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL--LEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~--~~~L   82 (140)
                      +.+++..|.+.++...+.                  ...+++...|..++  .    +.||+|+.+.++++-.-  ...+
T Consensus       217 ~~~~~~~D~~~~~~~a~~------------------~~~v~~~~~d~~~~--~----~~~D~v~~~~vlh~~~d~~~~~~  272 (358)
T 1zg3_A          217 HLKCTVFDQPQVVGNLTG------------------NENLNFVGGDMFKS--I----PSADAVLLKWVLHDWNDEQSLKI  272 (358)
T ss_dssp             TSEEEEEECHHHHSSCCC------------------CSSEEEEECCTTTC--C----CCCSEEEEESCGGGSCHHHHHHH
T ss_pred             CCeEEEeccHHHHhhccc------------------CCCcEEEeCccCCC--C----CCceEEEEcccccCCCHHHHHHH
Confidence            347777887655532211                  12377777777652  2    25999999999986443  4488


Q ss_pred             HHHHHHhcCC---CeEEEEEEEe
Q 032462           83 LQTIFALSGP---KTTILLGYEI  102 (140)
Q Consensus        83 ~~tl~~ll~~---~~~~~~~~~~  102 (140)
                      ++.+.+.++|   +|.+++....
T Consensus       273 l~~~~~~L~p~~~gG~l~i~e~~  295 (358)
T 1zg3_A          273 LKNSKEAISHKGKDGKVIIIDIS  295 (358)
T ss_dssp             HHHHHHHTGGGGGGCEEEEEECE
T ss_pred             HHHHHHhCCCCCCCcEEEEEEec
Confidence            8888888999   9998886543

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=92.98  E-value=1.8  Score=30.92  Aligned_cols=55  Identities=22%  Similarity=0.247  Sum_probs=37.3

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCC--cccccc-CCCccEEEEe
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE--DHIKAV-APPFDYIIGT   70 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~--~~~~~~-~~~~D~Ilas   70 (140)
                      |++|+..|. +..+...++|++.|..           .+++++..-|-.+.  ...+.. ..+||+|++.
T Consensus        89 ~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~n  147 (254)
T 2h00_A           89 GWYFLATEVDDMCFNYAKKNVEQNNL-----------SDLIKVVKVPQKTLLMDALKEESEIIYDFCMCN  147 (254)
T ss_dssp             CCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTCSSTTTSTTCCSCCBSEEEEC
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHcCC-----------CccEEEEEcchhhhhhhhhhcccCCcccEEEEC
Confidence            579999998 8899999999998864           23567666553321  111111 1579999875

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=92.74  E-value=0.83  Score=33.82  Aligned_cols=81  Identities=10%  Similarity=-0.035  Sum_probs=52.9

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--ccchHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEP   81 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--~~~~~~   81 (140)
                      +++|+++|. +..++.+++|+..|+.             +..+...|=-..+    ...++|+|+..+++-.  ...-..
T Consensus       126 ~~~y~a~DId~~~i~~ar~~~~~~g~-------------~~~~~v~D~~~~~----~~~~~DvvLllk~lh~LE~q~~~~  188 (253)
T 3frh_A          126 IASVWGCDIHQGLGDVITPFAREKDW-------------DFTFALQDVLCAP----PAEAGDLALIFKLLPLLEREQAGS  188 (253)
T ss_dssp             CSEEEEEESBHHHHHHHHHHHHHTTC-------------EEEEEECCTTTSC----CCCBCSEEEEESCHHHHHHHSTTH
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHhcCC-------------CceEEEeecccCC----CCCCcchHHHHHHHHHhhhhchhh
Confidence            459999998 7899999999999874             3344444443332    2458999999987754  223334


Q ss_pred             HHHHHHHhcCCCeEEEEEEEecC
Q 032462           82 LLQTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        82 L~~tl~~ll~~~~~~~~~~~~R~  104 (140)
                      +.+.++.|- ++ .++|+++.|.
T Consensus       189 ~~~ll~aL~-~~-~vvVsfPtks  209 (253)
T 3frh_A          189 AMALLQSLN-TP-RMAVSFPTRS  209 (253)
T ss_dssp             HHHHHHHCB-CS-EEEEEEECC-
T ss_pred             HHHHHHHhc-CC-CEEEEcChHH
Confidence            455555443 43 6667888553

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=92.32  E-value=0.053  Score=40.03  Aligned_cols=62  Identities=21%  Similarity=0.167  Sum_probs=40.6

Q ss_pred             CccCCCEEEEecc-h-------hHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccC---CCccEEEE
Q 032462            1 MALLGCNVITTDQ-I-------EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA---PPFDYIIG   69 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~-------~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~---~~~D~Ila   69 (140)
                      ||+.|++|+..|. +       +.+...++|++.|+..           +++++..-|..+.  .+...   ..||+|+ 
T Consensus       101 lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~-----------~ri~~~~~d~~~~--l~~~~~~~~~fD~V~-  166 (258)
T 2r6z_A          101 LASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTA-----------ARINLHFGNAAEQ--MPALVKTQGKPDIVY-  166 (258)
T ss_dssp             HHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH-----------TTEEEEESCHHHH--HHHHHHHHCCCSEEE-
T ss_pred             HHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCc-----------cCeEEEECCHHHH--HHhhhccCCCccEEE-
Confidence            4667899999998 8       7788888888888742           3466665555432  11111   5799987 


Q ss_pred             eecccCc
Q 032462           70 TDVVYAE   76 (140)
Q Consensus        70 sDviY~~   76 (140)
                      +|-.|.+
T Consensus       167 ~dP~~~~  173 (258)
T 2r6z_A          167 LDPMYPE  173 (258)
T ss_dssp             ECCCC--
T ss_pred             ECCCCCC
Confidence            4777764

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=92.19  E-value=0.24  Score=35.44  Aligned_cols=79  Identities=8%  Similarity=-0.020  Sum_probs=46.7

Q ss_pred             cCCCEEEEecch-h-HHHHH---HHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc
Q 032462            3 LLGCNVITTDQI-E-VLPLL---KRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH   77 (140)
Q Consensus         3 ~lGa~Vv~TD~~-~-vl~~l---~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~   77 (140)
                      ..|++|+..|.. + ++...   ++|+..++.            .++.+..-+..+.+   .  ..+|.|.+.-+.|.-.
T Consensus        46 ~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~------------~~v~~~~~d~~~l~---~--~~~d~v~~i~~~~~~~  108 (225)
T 3p2e_A           46 DQNTFYIGIDPVKENLFDISKKIIKKPSKGGL------------SNVVFVIAAAESLP---F--ELKNIADSISILFPWG  108 (225)
T ss_dssp             CTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC------------SSEEEECCBTTBCC---G--GGTTCEEEEEEESCCH
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC------------CCeEEEEcCHHHhh---h--hccCeEEEEEEeCCCc
Confidence            346799999973 4 55554   655544332            35666665554331   1  1236555544444211


Q ss_pred             --------chHHHHHHHHHhcCCCeEEEE
Q 032462           78 --------LLEPLLQTIFALSGPKTTILL   98 (140)
Q Consensus        78 --------~~~~L~~tl~~ll~~~~~~~~   98 (140)
                              ..+.+++.+.++++|+|.+++
T Consensus       109 ~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A          109 TLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             HHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence                    124567888889999999988

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=92.13  E-value=0.16  Score=40.23  Aligned_cols=86  Identities=17%  Similarity=0.077  Sum_probs=53.5

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEee--------
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTD--------   71 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasD--------   71 (140)
                      ||+.|++|+..|. +..+...++|++.|...          ..++++..-|..+.-.. ....+||+|+. |        
T Consensus       111 LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~g----------l~~i~~i~~Da~~~L~~-~~~~~fDvV~l-DPPrr~~~~  178 (410)
T 3ll7_A          111 LMSKASQGIYIERNDETAVAARHNIPLLLNE----------GKDVNILTGDFKEYLPL-IKTFHPDYIYV-DPARRSGAD  178 (410)
T ss_dssp             HHTTCSEEEEEESCHHHHHHHHHHHHHHSCT----------TCEEEEEESCGGGSHHH-HHHHCCSEEEE-CCEEC----
T ss_pred             HHhcCCEEEEEECCHHHHHHHHHhHHHhccC----------CCcEEEEECcHHHhhhh-ccCCCceEEEE-CCCCcCCCC
Confidence            4667889999998 88999999999988211          13566666655432110 01247998885 3        


Q ss_pred             -cccC-ccchHHHHHHHHHhcCCCeEEEE
Q 032462           72 -VVYA-EHLLEPLLQTIFALSGPKTTILL   98 (140)
Q Consensus        72 -viY~-~~~~~~L~~tl~~ll~~~~~~~~   98 (140)
                       -+|. +++.+++......+++....+++
T Consensus       179 grv~~led~~P~l~~~~~~l~~~~~~~~v  207 (410)
T 3ll7_A          179 KRVYAIADCEPDLIPLATELLPFCSSILA  207 (410)
T ss_dssp             -CCCCGGGEESCHHHHHHHHGGGSSEEEE
T ss_pred             ceEEehhhcCCCHHHHHHHHHhhCCcEEE
Confidence             3333 34566677666666654444433

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=92.10  E-value=0.44  Score=36.45  Aligned_cols=53  Identities=17%  Similarity=0.043  Sum_probs=39.2

Q ss_pred             ceEEEEeecCCCccccccCCCccEEEEeecccCccch--HHHHHHHHHhcCCCeEEEEEEE
Q 032462           43 SIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        43 ~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~--~~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      ++++...|..++  .    +.||+|+++.++.+-...  ..+++.+.+.++|+|.+++...
T Consensus       253 ~v~~~~~d~~~~--~----~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~  307 (372)
T 1fp1_D          253 GIEHVGGDMFAS--V----PQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEF  307 (372)
T ss_dssp             TEEEEECCTTTC--C----CCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCEEEeCCcccC--C----CCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            477777776652  2    239999999999764433  3788888889999999988743

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=91.47  E-value=0.49  Score=35.60  Aligned_cols=103  Identities=10%  Similarity=0.014  Sum_probs=70.0

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEee-cCCCccccccCCCccEEEEeecccC-ccchHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD-WGNEDHIKAVAPPFDYIIGTDVVYA-EHLLEPL   82 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~Ld-Wg~~~~~~~~~~~~D~IlasDviY~-~~~~~~L   82 (140)
                      .++++.|. +..+..|++|++.              ..++++..-| |..-........+||+|+ .|-=|. ....+.+
T Consensus       114 d~~vfvE~~~~a~~~L~~Nl~~--------------~~~~~V~~~D~~~~L~~l~~~~~~fdLVf-iDPPYe~k~~~~~v  178 (283)
T 2oo3_A          114 DRLYLCELHPTEYNFLLKLPHF--------------NKKVYVNHTDGVSKLNALLPPPEKRGLIF-IDPSYERKEEYKEI  178 (283)
T ss_dssp             SEEEEECCSHHHHHHHTTSCCT--------------TSCEEEECSCHHHHHHHHCSCTTSCEEEE-ECCCCCSTTHHHHH
T ss_pred             CeEEEEeCCHHHHHHHHHHhCc--------------CCcEEEEeCcHHHHHHHhcCCCCCccEEE-ECCCCCCCcHHHHH
Confidence            48999998 8899999999964              1345555444 211100001124688876 588888 4688888


Q ss_pred             HHHHHHh--cCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEEe
Q 032462           83 LQTIFAL--SGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKL  123 (140)
Q Consensus        83 ~~tl~~l--l~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~  123 (140)
                      +.+|...  ..++|.+.+=|+.-.....+.|.+.++ .+..+-.
T Consensus       179 l~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~~~~~~~l~  222 (283)
T 2oo3_A          179 PYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSKSVR  222 (283)
T ss_dssp             HHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCSSEEE
T ss_pred             HHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHHhcCCCeEE
Confidence            8888763  578999999999877666789999884 4544333

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=91.09  E-value=2.1  Score=32.27  Aligned_cols=109  Identities=12%  Similarity=0.049  Sum_probs=67.0

Q ss_pred             CEEEEecc-hhHHHHHHHHHH-HhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEE--eecccCcc--ch
Q 032462            6 CNVITTDQ-IEVLPLLKRNVE-WNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIG--TDVVYAEH--LL   79 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~-~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ila--sDviY~~~--~~   79 (140)
                      .+|++-|. +.|++..++-+. .|....        ..+++++..=|--+-  ......+||+||.  +|-.....  .-
T Consensus       108 ~~v~~VEID~~Vv~~a~~~lp~~~~~~~--------~dpRv~v~~~Dg~~~--l~~~~~~yDvIi~D~~dp~~~~~~L~t  177 (294)
T 3o4f_A          108 ESITMVEIDAGVVSFCRQYLPNHNAGSY--------DDPRFKLVIDDGVNF--VNQTSQTFDVIISDCTDPIGPGESLFT  177 (294)
T ss_dssp             CEEEEEESCHHHHHHHHHHCHHHHTTGG--------GCTTEEEEESCTTTT--TSCSSCCEEEEEESCCCCCCTTCCSSC
T ss_pred             ceEEEEcCCHHHHHHHHhcCcccccccc--------CCCcEEEEechHHHH--HhhccccCCEEEEeCCCcCCCchhhcC
Confidence            38999999 789999987653 344322        235677665554433  2234678999984  33322222  33


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEec--ChhHHHHHHHHHHhcCeEEee
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFNVKLV  124 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R--~~~~~~~F~~~~~~~f~v~~v  124 (140)
                      ..+.+.+++.|+|+|++..=...-  ..+......+.+++.|.....
T Consensus       178 ~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~~v~~  224 (294)
T 3o4f_A          178 SAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGF  224 (294)
T ss_dssp             CHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHCSEEEE
T ss_pred             HHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhCCceee
Confidence            568888999999999886533322  223345556666767765443

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=90.90  E-value=1.4  Score=30.13  Aligned_cols=94  Identities=17%  Similarity=0.126  Sum_probs=50.8

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc--
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--   77 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~--   77 (140)
                      |..|+ +|+..|. +..+..+++|+. |                +.+..-|..+   .   ...||+|++.-......  
T Consensus        70 ~~~~~~~v~~vD~~~~~~~~a~~~~~-~----------------~~~~~~d~~~---~---~~~~D~v~~~~p~~~~~~~  126 (200)
T 1ne2_A           70 YLLGAESVTAFDIDPDAIETAKRNCG-G----------------VNFMVADVSE---I---SGKYDTWIMNPPFGSVVKH  126 (200)
T ss_dssp             HHTTBSEEEEEESCHHHHHHHHHHCT-T----------------SEEEECCGGG---C---CCCEEEEEECCCC------
T ss_pred             HHcCCCEEEEEECCHHHHHHHHHhcC-C----------------CEEEECcHHH---C---CCCeeEEEECCCchhccCc
Confidence            44576 7999998 889999998875 2                1233323222   1   25799999754433321  


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeec
Q 032462           78 LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVP  125 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~  125 (140)
                      ....+++.+.+.+   +.++++....   +.....+.+ +.| .++.+.
T Consensus       127 ~~~~~l~~~~~~~---g~~~~~~~~~---~~~~~~~~~~~~g-~~~~~~  168 (200)
T 1ne2_A          127 SDRAFIDKAFETS---MWIYSIGNAK---ARDFLRREFSARG-DVFREE  168 (200)
T ss_dssp             -CHHHHHHHHHHE---EEEEEEEEGG---GHHHHHHHHHHHE-EEEEEE
T ss_pred             hhHHHHHHHHHhc---CcEEEEEcCc---hHHHHHHHHHHCC-CEEEEE
Confidence            2234555555555   5566665432   233333444 346 666553

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=90.87  E-value=2.3  Score=31.60  Aligned_cols=58  Identities=21%  Similarity=0.245  Sum_probs=38.1

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE   76 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~   76 (140)
                      ||..|++|+..|. +..++.+++|+..+..            .++++..-|..+.+     ...||+|++ +.-|.-
T Consensus        60 La~~~~~v~~vDi~~~~~~~a~~~~~~~~~------------~~v~~~~~D~~~~~-----~~~~D~Vv~-n~py~~  118 (299)
T 2h1r_A           60 LLPLAKKVITIDIDSRMISEVKKRCLYEGY------------NNLEVYEGDAIKTV-----FPKFDVCTA-NIPYKI  118 (299)
T ss_dssp             HTTTSSEEEEECSCHHHHHHHHHHHHHTTC------------CCEEC----CCSSC-----CCCCSEEEE-ECCGGG
T ss_pred             HHhcCCEEEEEECCHHHHHHHHHHHHHcCC------------CceEEEECchhhCC-----cccCCEEEE-cCCccc
Confidence            3556789999998 7899999999986642            34555544444322     247999885 777763

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=90.29  E-value=0.7  Score=35.42  Aligned_cols=74  Identities=15%  Similarity=0.097  Sum_probs=52.6

Q ss_pred             CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--ccchHHH
Q 032462            5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--~~~~~~L   82 (140)
                      +.+++..|.+.++...+                  ...++++...|..++  .+   .. |+|+.+.++++  ++....+
T Consensus       225 ~~~~~~~D~~~~~~~a~------------------~~~~v~~~~~D~~~~--~p---~~-D~v~~~~vlh~~~d~~~~~~  280 (364)
T 3p9c_A          225 TIKGVNFDLPHVISEAP------------------QFPGVTHVGGDMFKE--VP---SG-DTILMKWILHDWSDQHCATL  280 (364)
T ss_dssp             TCEEEEEECHHHHTTCC------------------CCTTEEEEECCTTTC--CC---CC-SEEEEESCGGGSCHHHHHHH
T ss_pred             CCeEEEecCHHHHHhhh------------------hcCCeEEEeCCcCCC--CC---CC-CEEEehHHhccCCHHHHHHH
Confidence            45788888876654322                  124688888887652  22   22 99999999974  3556678


Q ss_pred             HHHHHHhcCCCeEEEEEEEe
Q 032462           83 LQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~  102 (140)
                      ++-+.+.++|+|.+++.-..
T Consensus       281 L~~~~~~L~pgG~l~i~e~~  300 (364)
T 3p9c_A          281 LKNCYDALPAHGKVVLVQCI  300 (364)
T ss_dssp             HHHHHHHSCTTCEEEEEECC
T ss_pred             HHHHHHHcCCCCEEEEEEec
Confidence            88888999999999886543

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=89.81  E-value=1.8  Score=32.65  Aligned_cols=52  Identities=12%  Similarity=0.052  Sum_probs=36.0

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEE
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIG   69 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ila   69 (140)
                      ++|++.|. +..+..+++|++.++.            .++++..-|+.+.........+||.|+.
T Consensus       128 g~V~a~D~~~~~l~~~~~n~~r~g~------------~~v~~~~~D~~~~~~~~~~~~~fD~Vl~  180 (309)
T 2b9e_A          128 GKIFAFDLDAKRLASMATLLARAGV------------SCCELAEEDFLAVSPSDPRYHEVHYILL  180 (309)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCC------------CeEEEEeCChHhcCccccccCCCCEEEE
Confidence            59999998 8899999999998864            3466666665443211001247999885

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=89.79  E-value=0.81  Score=35.07  Aligned_cols=74  Identities=15%  Similarity=0.097  Sum_probs=51.8

Q ss_pred             CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--ccchHHH
Q 032462            5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--~~~~~~L   82 (140)
                      +.+++..|.+.++...+                  ...++++...|..++  .+   .. |+|+.+.++++  ++....+
T Consensus       227 ~~~~~~~D~~~~~~~a~------------------~~~~v~~~~~d~~~~--~p---~~-D~v~~~~vlh~~~~~~~~~~  282 (368)
T 3reo_A          227 SINAINFDLPHVIQDAP------------------AFSGVEHLGGDMFDG--VP---KG-DAIFIKWICHDWSDEHCLKL  282 (368)
T ss_dssp             TCEEEEEECHHHHTTCC------------------CCTTEEEEECCTTTC--CC---CC-SEEEEESCGGGBCHHHHHHH
T ss_pred             CCEEEEEehHHHHHhhh------------------hcCCCEEEecCCCCC--CC---CC-CEEEEechhhcCCHHHHHHH
Confidence            45788888866654322                  124678888887652  22   22 99999999974  3455678


Q ss_pred             HHHHHHhcCCCeEEEEEEEe
Q 032462           83 LQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~  102 (140)
                      ++-+.+.++|+|.+++.-..
T Consensus       283 l~~~~~~L~pgG~l~i~e~~  302 (368)
T 3reo_A          283 LKNCYAALPDHGKVIVAEYI  302 (368)
T ss_dssp             HHHHHHHSCTTCEEEEEECC
T ss_pred             HHHHHHHcCCCCEEEEEEec
Confidence            88889999999999886543

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=89.62  E-value=2.1  Score=33.33  Aligned_cols=80  Identities=14%  Similarity=0.159  Sum_probs=51.4

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc-----ch
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----LL   79 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~-----~~   79 (140)
                      .+|+..|. +.++...+.|++.|+.           ...+.+..-|..+...    ..+||+|| +|-=|...     ..
T Consensus       264 ~~V~GvDid~~al~~Ar~Na~~~gl-----------~~~I~~~~~D~~~~~~----~~~fD~Iv-~NPPYg~rl~~~~~l  327 (393)
T 3k0b_A          264 LNIIGGDIDARLIEIAKQNAVEAGL-----------GDLITFRQLQVADFQT----EDEYGVVV-ANPPYGERLEDEEAV  327 (393)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTC-----------TTCSEEEECCGGGCCC----CCCSCEEE-ECCCCCCSHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCC-----------CCceEEEECChHhCCC----CCCCCEEE-ECCCCccccCCchhH
Confidence            46999998 8899999999999875           2356666666554321    34899887 56666532     23


Q ss_pred             HHHHHHHHHhcC--CCeEEEEEEE
Q 032462           80 EPLLQTIFALSG--PKTTILLGYE  101 (140)
Q Consensus        80 ~~L~~tl~~ll~--~~~~~~~~~~  101 (140)
                      ..|.+.+...++  +++.+++...
T Consensus       328 ~~ly~~lg~~lk~~~g~~~~iit~  351 (393)
T 3k0b_A          328 RQLYREMGIVYKRMPTWSVYVLTS  351 (393)
T ss_dssp             HHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEEC
Confidence            334444443332  4777776655

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=89.46  E-value=3.8  Score=31.80  Aligned_cols=80  Identities=8%  Similarity=0.028  Sum_probs=52.7

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc-----ch
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----LL   79 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~-----~~   79 (140)
                      .+|+..|. +.++...+.|++.++.           ...+.+..-|..+...    ...||+|| +|-=|...     ..
T Consensus       257 ~~v~GvDid~~al~~Ar~Na~~~gl-----------~~~I~~~~~D~~~l~~----~~~fD~Iv-~NPPYG~rl~~~~~l  320 (384)
T 3ldg_A          257 LDISGFDFDGRMVEIARKNAREVGL-----------EDVVKLKQMRLQDFKT----NKINGVLI-SNPPYGERLLDDKAV  320 (384)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCGGGCCC----CCCSCEEE-ECCCCTTTTSCHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCC-----------CCceEEEECChHHCCc----cCCcCEEE-ECCchhhccCCHHHH
Confidence            46999998 8899999999999875           2456666655544321    34799877 66667532     23


Q ss_pred             HHHHHHHHHhcC--CCeEEEEEEE
Q 032462           80 EPLLQTIFALSG--PKTTILLGYE  101 (140)
Q Consensus        80 ~~L~~tl~~ll~--~~~~~~~~~~  101 (140)
                      ..|.+.+...++  +++.+++...
T Consensus       321 ~~ly~~lg~~lk~~~g~~~~iit~  344 (384)
T 3ldg_A          321 DILYNEMGETFAPLKTWSQFILTN  344 (384)
T ss_dssp             HHHHHHHHHHHTTCTTSEEEEEES
T ss_pred             HHHHHHHHHHHhhCCCcEEEEEEC
Confidence            445555554444  4777776655

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=88.82  E-value=4.2  Score=28.84  Aligned_cols=100  Identities=19%  Similarity=0.076  Sum_probs=58.5

Q ss_pred             ccC-CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEE------eecCCCccc------c-------cc
Q 032462            2 ALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE------LDWGNEDHI------K-------AV   60 (140)
Q Consensus         2 A~l-Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~------LdWg~~~~~------~-------~~   60 (140)
                      |++ |++|+..|. ++.....++|++.++..         ...+|.+..      +.||-+...      +       ..
T Consensus        47 A~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~---------~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~  117 (202)
T 3cvo_A           47 AELPGKHVTSVESDRAWARMMKAWLAANPPA---------EGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRT  117 (202)
T ss_dssp             HTSTTCEEEEEESCHHHHHHHHHHHHHSCCC---------TTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGC
T ss_pred             HHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC---------CCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhcc
Confidence            454 789999998 77889999999987630         023454443      446654321      1       01


Q ss_pred             --CCCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEEEE-ecCh-hHHHHHHHHH
Q 032462           61 --APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE-IRST-SVHEQMLQMW  115 (140)
Q Consensus        61 --~~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~-~R~~-~~~~~F~~~~  115 (140)
                        ..+||+|+- |-=+   -...+..++ .+++|+|.+++-.. .|.. .....|++..
T Consensus       118 ~~~~~fDlIfI-Dg~k---~~~~~~~~l-~~l~~GG~Iv~DNv~~r~~y~~v~~~~~~~  171 (202)
T 3cvo_A          118 EGFRHPDVVLV-DGRF---RVGCALATA-FSITRPVTLLFDDYSQRRWQHQVEEFLGAP  171 (202)
T ss_dssp             TTCCCCSEEEE-CSSS---HHHHHHHHH-HHCSSCEEEEETTGGGCSSGGGGHHHHCCC
T ss_pred             ccCCCCCEEEE-eCCC---chhHHHHHH-HhcCCCeEEEEeCCcCCcchHHHHHHHhHH
Confidence              267998874 2211   123333344 67789998866442 3432 2356788754

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=88.26  E-value=5.7  Score=29.60  Aligned_cols=88  Identities=14%  Similarity=0.103  Sum_probs=57.9

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccc---c------ccCCCccEEEEeeccc
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI---K------AVAPPFDYIIGTDVVY   74 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~---~------~~~~~~D~IlasDviY   74 (140)
                      +++|+..|. +.+|...|.++..+.            ..++.+..-|..+....   +      ....++.+++-+=+-|
T Consensus       105 ~arVv~VD~sp~mLa~Ar~~l~~~~------------~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~  172 (277)
T 3giw_A          105 ESRVVYVDNDPIVLTLSQGLLASTP------------EGRTAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHF  172 (277)
T ss_dssp             TCEEEEEECCHHHHHTTHHHHCCCS------------SSEEEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGG
T ss_pred             CCEEEEEeCChHHHHHHHHHhccCC------------CCcEEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhc
Confidence            679999998 889998887764321            24677777777654210   1      0123334444343444


Q ss_pred             Cccc--hHHHHHHHHHhcCCCeEEEEEEEecC
Q 032462           75 AEHL--LEPLLQTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        75 ~~~~--~~~L~~tl~~ll~~~~~~~~~~~~R~  104 (140)
                      -++.  ...+++.+...+.|++.+.+++..+.
T Consensus       173 l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          173 VLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE  204 (277)
T ss_dssp             SCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred             CCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence            4443  46799999999999999999987764

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=87.41  E-value=2.7  Score=32.56  Aligned_cols=80  Identities=18%  Similarity=0.109  Sum_probs=52.0

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc-----ch
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----LL   79 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~-----~~   79 (140)
                      .+|+..|. +.++...+.|++.|+..           ..+.+..-|..+...    ..+||+|| +|-=|...     ..
T Consensus       258 ~~V~GvDid~~ai~~Ar~Na~~~gl~-----------~~i~~~~~D~~~l~~----~~~~D~Iv-~NPPyg~rl~~~~~l  321 (385)
T 3ldu_A          258 FKIYGYDIDEESIDIARENAEIAGVD-----------EYIEFNVGDATQFKS----EDEFGFII-TNPPYGERLEDKDSV  321 (385)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHHTCG-----------GGEEEEECCGGGCCC----SCBSCEEE-ECCCCCCSHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCC-----------CceEEEECChhhcCc----CCCCcEEE-ECCCCcCccCCHHHH
Confidence            57999998 88999999999998752           456776666654321    34799877 45556532     23


Q ss_pred             HHHHHHHHHhcC--CCeEEEEEEE
Q 032462           80 EPLLQTIFALSG--PKTTILLGYE  101 (140)
Q Consensus        80 ~~L~~tl~~ll~--~~~~~~~~~~  101 (140)
                      ..|.+.+...++  +++.+++...
T Consensus       322 ~~ly~~lg~~lk~~~g~~~~iit~  345 (385)
T 3ldu_A          322 KQLYKELGYAFRKLKNWSYYLITS  345 (385)
T ss_dssp             HHHHHHHHHHHHTSBSCEEEEEES
T ss_pred             HHHHHHHHHHHhhCCCCEEEEEEC
Confidence            344444444443  4667766554

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=86.88  E-value=2  Score=31.67  Aligned_cols=58  Identities=17%  Similarity=0.190  Sum_probs=39.7

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE   76 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~   76 (140)
                      +..|++|+..|. +.+++.+++|+..+..           ..++++..-|..+.+     ...||+|++ ++-|.-
T Consensus        47 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~D~~~~~-----~~~fD~vv~-nlpy~~  105 (285)
T 1zq9_A           47 LEKAKKVVACELDPRLVAELHKRVQGTPV-----------ASKLQVLVGDVLKTD-----LPFFDTCVA-NLPYQI  105 (285)
T ss_dssp             HHHSSEEEEEESCHHHHHHHHHHHTTSTT-----------GGGEEEEESCTTTSC-----CCCCSEEEE-ECCGGG
T ss_pred             HhhCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEcceeccc-----chhhcEEEE-ecCccc
Confidence            445789999998 7899999999865532           145666665655432     237898887 666653

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=85.32  E-value=9.1  Score=28.72  Aligned_cols=80  Identities=11%  Similarity=0.063  Sum_probs=50.6

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecc-cCcc------
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV-YAEH------   77 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDvi-Y~~~------   77 (140)
                      .+|+..|. +..+..++.|+..++.             .+.+..-|+-...    ...+||+||+.=.. |.+.      
T Consensus       160 ~~v~GiDi~~~~~~~a~~n~~~~g~-------------~~~i~~~D~l~~~----~~~~fD~Ii~NPPfg~~~~~~~~~~  222 (344)
T 2f8l_A          160 VHASGVDVDDLLISLALVGADLQRQ-------------KMTLLHQDGLANL----LVDPVDVVISDLPVGYYPDDENAKT  222 (344)
T ss_dssp             EEEEEEESCHHHHHHHHHHHHHHTC-------------CCEEEESCTTSCC----CCCCEEEEEEECCCSEESCHHHHTT
T ss_pred             ceEEEEECCHHHHHHHHHHHHhCCC-------------CceEEECCCCCcc----ccCCccEEEECCCCCCcCchhhhhh
Confidence            57999998 7899999999987753             2233333333221    24679999986542 1110      


Q ss_pred             -----------chHHHHHHHHHhcCCCeEEEEEEEe
Q 032462           78 -----------LLEPLLQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        78 -----------~~~~L~~tl~~ll~~~~~~~~~~~~  102 (140)
                                 ....++.-+..+++|+|.+.+..+.
T Consensus       223 ~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~  258 (344)
T 2f8l_A          223 FELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD  258 (344)
T ss_dssp             STTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             ccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence                       1124666666778899988777643

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=81.13  E-value=4.2  Score=32.39  Aligned_cols=93  Identities=9%  Similarity=-0.020  Sum_probs=54.4

Q ss_pred             CCC-EEEEecc-hhHHHHHHHHHHHhh---cccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccc
Q 032462            4 LGC-NVITTDQ-IEVLPLLKRNVEWNT---SRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL   78 (140)
Q Consensus         4 lGa-~Vv~TD~-~~vl~~l~~Ni~~N~---~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~   78 (140)
                      .|+ +|+.-|. +..+...+.|++...   ...+      ....+|.+..-|-.+.+ +......+|+|++.-.++.++.
T Consensus       195 ~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~G------l~~~rVefi~GD~~~lp-~~d~~~~aDVVf~Nn~~F~pdl  267 (438)
T 3uwp_A          195 TNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG------KKHAEYTLERGDFLSEE-WRERIANTSVIFVNNFAFGPEV  267 (438)
T ss_dssp             CCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHT------BCCCEEEEEECCTTSHH-HHHHHHTCSEEEECCTTCCHHH
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhC------CCCCCeEEEECcccCCc-cccccCCccEEEEcccccCchH
Confidence            477 5999998 778888888875421   1100      01145555544433321 1111247999998766655555


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEecC
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~R~  104 (140)
                      ...|. -+.+.|+|+|.+++.-..+.
T Consensus       268 ~~aL~-Ei~RvLKPGGrIVssE~f~p  292 (438)
T 3uwp_A          268 DHQLK-ERFANMKEGGRIVSSKPFAP  292 (438)
T ss_dssp             HHHHH-HHHTTSCTTCEEEESSCSSC
T ss_pred             HHHHH-HHHHcCCCCcEEEEeecccC
Confidence            55543 34567889999987644443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	140
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.53
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.52
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.29
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.11
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	98.07
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	97.96
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.9
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.9
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	97.86
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.81
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	97.8
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	97.8
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	97.79
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	97.73
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	97.66
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	97.63
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	97.62
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	97.58
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	97.57
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	97.51
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	97.5
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	97.49
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	97.45
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	97.4
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	97.39
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	97.38
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	97.36
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	97.28
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	97.27
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	97.25
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	97.25
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	97.13
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	97.11
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	97.07
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.04
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	97.0
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	96.96
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	96.89
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	96.83
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	96.81
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	96.8
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	96.7
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	96.6
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	96.55
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	96.39
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	96.36
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	96.11
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	96.1
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	96.03
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	95.91
d2h00a1	250	Methyltransferase 10 domain containing protein MET	95.73
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	95.65
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	94.98
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	94.5
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	94.07
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	94.02
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	93.93
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	93.21
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	93.13
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	92.74
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	92.05
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	91.92
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	91.87
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	91.51
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	90.72
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	90.24
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	89.4
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	88.81
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	88.76
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	86.86
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	86.16
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	85.83
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	85.22
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	83.76
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	83.19
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	82.45
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	81.41
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	80.73
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	80.35
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	80.17

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.53  E-value=2.1e-07  Score=64.67  Aligned_cols=90  Identities=17%  Similarity=0.138  Sum_probs=68.2

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc-c
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-L   78 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~-~   78 (140)
                      ||+.+.+|+++|. +..+..+++|++.|...          ..++++..-||-+.  .  ....||+|++..+.|... .
T Consensus        70 la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~----------~~~i~~~~~d~~~~--~--~~~~fD~Ii~~~p~~~~~~~  135 (194)
T d1dusa_          70 LADEVKSTTMADINRRAIKLAKENIKLNNLD----------NYDIRVVHSDLYEN--V--KDRKYNKIITNPPIRAGKEV  135 (194)
T ss_dssp             HGGGSSEEEEEESCHHHHHHHHHHHHHTTCT----------TSCEEEEECSTTTT--C--TTSCEEEEEECCCSTTCHHH
T ss_pred             HHhhccccceeeeccccchhHHHHHHHhCCc----------cceEEEEEcchhhh--h--ccCCceEEEEcccEEecchh
Confidence            3566789999998 88999999999999752          34566666666542  1  256899999877766543 5


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEecC
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~R~  104 (140)
                      .+.+++.+.++++|+|.+++......
T Consensus       136 ~~~~l~~~~~~LkpgG~l~i~~~~~~  161 (194)
T d1dusa_         136 LHRIIEEGKELLKDNGEIWVVIQTKQ  161 (194)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred             hhhHHHHHHHhcCcCcEEEEEEeCcC
Confidence            67889999999999999988665443

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.52  E-value=1.5e-07  Score=68.56  Aligned_cols=102  Identities=19%  Similarity=0.144  Sum_probs=72.6

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      +|++|++|+..|. +..+...++|++.|+..             +++..-++.+.    ....+||+|++.   +.....
T Consensus       138 aa~~g~~V~gvDis~~av~~A~~na~~n~~~-------------~~~~~~d~~~~----~~~~~fD~V~an---i~~~~l  197 (254)
T d2nxca1         138 AEKLGGKALGVDIDPMVLPQAEANAKRNGVR-------------PRFLEGSLEAA----LPFGPFDLLVAN---LYAELH  197 (254)
T ss_dssp             HHHTTCEEEEEESCGGGHHHHHHHHHHTTCC-------------CEEEESCHHHH----GGGCCEEEEEEE---CCHHHH
T ss_pred             HHhcCCEEEEEECChHHHHHHHHHHHHcCCc-------------eeEEecccccc----ccccccchhhhc---cccccH
Confidence            3678999999998 88999999999999752             23444343321    124689999974   233456


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEee
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLV  124 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v  124 (140)
                      ..++..+.+.++|+|.++++--.+..  .+.+.+.+ +.||.+.+.
T Consensus       198 ~~l~~~~~~~LkpGG~lilSgil~~~--~~~v~~~~~~~Gf~~~~~  241 (254)
T d2nxca1         198 AALAPRYREALVPGGRALLTGILKDR--APLVREAMAGAGFRPLEE  241 (254)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEEGGG--HHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHhcCCCcEEEEEecchhh--HHHHHHHHHHCCCEEEEE
Confidence            77888888999999999987555543  35566666 468987654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.29  E-value=5.5e-06  Score=57.96  Aligned_cols=88  Identities=13%  Similarity=0.046  Sum_probs=70.7

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      ||..|++|+..|. ++.+...+.++..++.            .++++..-++.+-+   .....||+|++..+++.-.-.
T Consensus        33 l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~------------~~i~~~~~d~~~l~---~~~~~fD~v~~~~~l~~~~d~   97 (231)
T d1vl5a_          33 FAPFVKKVVAFDLTEDILKVARAFIEGNGH------------QQVEYVQGDAEQMP---FTDERFHIVTCRIAAHHFPNP   97 (231)
T ss_dssp             HGGGSSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEECCC-CCC---SCTTCEEEEEEESCGGGCSCH
T ss_pred             HHHhCCEEEEEECCHHHHhhhhhccccccc------------cccccccccccccc---ccccccccccccccccccCCH
Confidence            4678999999998 8899999999988753            56788888887643   235789999999999887667


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEec
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      ..+++-+.++++|+|.+++.....
T Consensus        98 ~~~l~~~~r~LkpgG~l~i~~~~~  121 (231)
T d1vl5a_          98 ASFVSEAYRVLKKGGQLLLVDNSA  121 (231)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             HHHHHHHHHhcCCCcEEEEEeCCC
Confidence            888999999999999988865443

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.11  E-value=7.3e-06  Score=56.52  Aligned_cols=85  Identities=18%  Similarity=0.184  Sum_probs=66.0

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC--cc
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EH   77 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~--~~   77 (140)
                      ||+.|++|+..|. +..++.++++.+..+.            ..+.+...|..+...    ...||+|++..+++.  +.
T Consensus        48 la~~g~~v~gvD~s~~~l~~a~~~~~~~~~------------~~~~~~~~d~~~~~~----~~~fD~I~~~~~~~~~~~~  111 (198)
T d2i6ga1          48 LAANGYDVTAWDKNPASMANLERIKAAEGL------------DNLQTDLVDLNTLTF----DGEYDFILSTVVMMFLEAQ  111 (198)
T ss_dssp             HHHTTCEEEEEESCHHHHHHHHHHHHHTTC------------TTEEEEECCTTTCCC----CCCEEEEEEESCGGGSCTT
T ss_pred             HHHHhhhhccccCcHHHHHHHHHHhhhccc------------cchhhhheecccccc----cccccEEEEeeeeecCCHH
Confidence            4678999999998 7789999988876543            356666666654431    468999999999885  35


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEEE
Q 032462           78 LLEPLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      ....+++-+.++++|+|.+++...
T Consensus       112 ~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1         112 TIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             HHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHcCCCcEEEEEEe
Confidence            677899999999999998877644

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.07  E-value=2.4e-05  Score=55.05  Aligned_cols=88  Identities=9%  Similarity=-0.037  Sum_probs=69.5

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      ||..|++|+..|. +..++..++++..+..            .++.+..-+..+.   +.....||+|+++.++..-...
T Consensus        34 la~~~~~v~gvD~S~~~l~~A~~~~~~~~~------------~~~~~~~~d~~~~---~~~~~~fD~v~~~~~l~~~~d~   98 (234)
T d1xxla_          34 FSPYVQECIGVDATKEMVEVASSFAQEKGV------------ENVRFQQGTAESL---PFPDDSFDIITCRYAAHHFSDV   98 (234)
T ss_dssp             HGGGSSEEEEEESCHHHHHHHHHHHHHHTC------------CSEEEEECBTTBC---CSCTTCEEEEEEESCGGGCSCH
T ss_pred             HHHhCCeEEEEeCChhhhhhhhhhhccccc------------ccccccccccccc---cccccccceeeeeceeecccCH
Confidence            4677899999998 7899999999988764            3466666665432   2335789999999999876668


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEec
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      ..+++.+.++++|+|.++++...+
T Consensus        99 ~~~l~~~~r~LkpgG~~~~~~~~~  122 (234)
T d1xxla_          99 RKAVREVARVLKQDGRFLLVDHYA  122 (234)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             HHHHHHHHHeeCCCcEEEEEEcCC
Confidence            899999999999999998865443

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.96  E-value=2.9e-06  Score=56.71  Aligned_cols=87  Identities=11%  Similarity=0.224  Sum_probs=67.4

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      ++.|| +|++.|. +..+..+++|++.|+.           ..++++..-|+.+.  .+....+||+|+. |.=|.....
T Consensus        33 ~~rga~~v~~ve~~~~a~~~~~~n~~~~~~-----------~~~~~ii~~D~~~~--l~~~~~~fDiIf~-DPPy~~~~~   98 (152)
T d2esra1          33 VSRGMSAAVLVEKNRKAQAIIQDNIIMTKA-----------ENRFTLLKMEAERA--IDCLTGRFDLVFL-DPPYAKETI   98 (152)
T ss_dssp             HHTTCCEEEEECCCHHHHHHHHHHHHTTTC-----------GGGEEEECSCHHHH--HHHBCSCEEEEEE-CCSSHHHHH
T ss_pred             HHhCcceeeeehhchhhhhhhhhhhhhccc-----------ccchhhhccccccc--ccccccccceeEe-chhhccchH
Confidence            35788 9999998 8899999999999875           35677777666543  2234678999987 898988888


Q ss_pred             HHHHHHHHH--hcCCCeEEEEEEEe
Q 032462           80 EPLLQTIFA--LSGPKTTILLGYEI  102 (140)
Q Consensus        80 ~~L~~tl~~--ll~~~~~~~~~~~~  102 (140)
                      .+.+..|..  ++++++.+++-+..
T Consensus        99 ~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          99 VATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             HHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             HHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            888888865  47888888876543

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.90  E-value=6e-06  Score=61.70  Aligned_cols=99  Identities=13%  Similarity=0.077  Sum_probs=65.4

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEee---cCCCccccccCCCccEEEEeecccCc
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD---WGNEDHIKAVAPPFDYIIGTDVVYAE   76 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~Ld---Wg~~~~~~~~~~~~D~IlasDviY~~   76 (140)
                      |+.|| +|+..|. +..++.+++|++.|+..           .++.+..-|   |...  .+....+||+|| +|.-+..
T Consensus       164 a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~-----------~~~~~~~~d~~~~~~~--~~~~~~~fD~Vi-~DpP~~~  229 (324)
T d2as0a2         164 AIAGADEVIGIDKSPRAIETAKENAKLNGVE-----------DRMKFIVGSAFEEMEK--LQKKGEKFDIVV-LDPPAFV  229 (324)
T ss_dssp             HHTTCSEEEEEESCHHHHHHHHHHHHHTTCG-----------GGEEEEESCHHHHHHH--HHHTTCCEEEEE-ECCCCSC
T ss_pred             hhcCCcEEEeecCCHHHHHHHHHHHHHcCCC-----------ccceeeechhhhhhHH--HHhccCCCCchh-cCCcccc
Confidence            45687 8999998 88999999999999863           344444322   2211  122357899999 5665553


Q ss_pred             cc----------hHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH
Q 032462           77 HL----------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW  115 (140)
Q Consensus        77 ~~----------~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~  115 (140)
                      ..          ...|+.....+++|+|.++++.-.+.-+ .+.|.+.+
T Consensus       230 ~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~-~~~f~~~v  277 (324)
T d2as0a2         230 QHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVD-LQMFKDMI  277 (324)
T ss_dssp             SSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSC-HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCC-HHHHHHHH
Confidence            22          2335555566778999988877666543 46777654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.90  E-value=3.4e-05  Score=52.76  Aligned_cols=103  Identities=16%  Similarity=0.118  Sum_probs=70.4

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      ||+.+++|+..|. ++.+..+++|++.|+.           ..++++..-+..+.   ......||.|+.....   ...
T Consensus        51 lA~~~~~V~avD~~~~~l~~a~~n~~~~gl-----------~~~v~~~~gda~~~---~~~~~~~D~v~~~~~~---~~~  113 (186)
T d1l3ia_          51 LAGRVRRVYAIDRNPEAISTTEMNLQRHGL-----------GDNVTLMEGDAPEA---LCKIPDIDIAVVGGSG---GEL  113 (186)
T ss_dssp             HHTTSSEEEEEESCHHHHHHHHHHHHHTTC-----------CTTEEEEESCHHHH---HTTSCCEEEEEESCCT---TCH
T ss_pred             ccccceEEEEecCCHHHHHHHHHHHHHcCC-----------CcceEEEECchhhc---ccccCCcCEEEEeCcc---ccc
Confidence            3566779999998 8899999999999875           24677766554322   2235689999876543   345


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEE
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVK  122 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~  122 (140)
                      +.+++.+...++|+|.+++......  ....+.+.++ .++.++
T Consensus       114 ~~~~~~~~~~LkpgG~lvi~~~~~e--~~~~~~~~l~~~~~~~~  155 (186)
T d1l3ia_         114 QEILRIIKDKLKPGGRIIVTAILLE--TKFEAMECLRDLGFDVN  155 (186)
T ss_dssp             HHHHHHHHHTEEEEEEEEEEECBHH--HHHHHHHHHHHTTCCCE
T ss_pred             hHHHHHHHHHhCcCCEEEEEeeccc--cHHHHHHHHHHcCCCeE
Confidence            6788888888999998876554332  2345555553 466544

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=3.3e-05  Score=54.72  Aligned_cols=84  Identities=12%  Similarity=-0.012  Sum_probs=70.8

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL   82 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L   82 (140)
                      .|++|+..|. +..+...++|.+.++.           .+++++..-|+.+..    ...+||+|++..+++.-...+.+
T Consensus        55 ~~~~v~GvD~s~~~~~~ar~~~~~~gl-----------~~~v~~~~~d~~~~~----~~~~fD~v~~~~~~~~~~d~~~~  119 (245)
T d1nkva_          55 HGITGTGIDMSSLFTAQAKRRAEELGV-----------SERVHFIHNDAAGYV----ANEKCDVAACVGATWIAGGFAGA  119 (245)
T ss_dssp             TCCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCCTTCC----CSSCEEEEEEESCGGGTSSSHHH
T ss_pred             cCCEEEEEecccchhhHHHHHHHHhhc-----------cccchhhhhHHhhcc----ccCceeEEEEEehhhccCCHHHH
Confidence            5889999998 7899999999988864           357888888887642    25689999999999988888899


Q ss_pred             HHHHHHhcCCCeEEEEEEEe
Q 032462           83 LQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~  102 (140)
                      ++.+.+.++|+|.+++....
T Consensus       120 l~~~~r~LkPGG~l~i~~~~  139 (245)
T d1nkva_         120 EELLAQSLKPGGIMLIGEPY  139 (245)
T ss_dssp             HHHHTTSEEEEEEEEEEEEE
T ss_pred             HHHHHHHcCcCcEEEEEecc
Confidence            99999999999999887653

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.81  E-value=5.4e-06  Score=61.84  Aligned_cols=98  Identities=13%  Similarity=0.109  Sum_probs=62.1

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeecccC--cc---
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYA--EH---   77 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~~~D~IlasDviY~--~~---   77 (140)
                      |++|+..|. +..+..+++|++.|+.            .++++...|..+... ......+||+||.-=--+.  ..   
T Consensus       167 ~~~V~~vD~s~~al~~a~~n~~~ngl------------~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~  234 (318)
T d1wxxa2         167 FREVVAVDSSAEALRRAEENARLNGL------------GNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVE  234 (318)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHHHTTC------------TTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHH
T ss_pred             CCcEEeecchHHHHHHHHHHHHHcCC------------CCcceeeccHHHHhhhhHhhhcCCCEEEEcCCccccchHHHH
Confidence            459999998 8899999999999975            345655555443211 1223578999986321111  11   


Q ss_pred             ----chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH
Q 032462           78 ----LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW  115 (140)
Q Consensus        78 ----~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~  115 (140)
                          ....|+.....+++|+|.++++.-...-+ .+.|.+.+
T Consensus       235 ~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~-~~~f~~~v  275 (318)
T d1wxxa2         235 RAYRAYKEVNLRAIKLLKEGGILATASCSHHMT-EPLFYAMV  275 (318)
T ss_dssp             HHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccC-HHHHHHHH
Confidence                23356667777789999988776554432 34555543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.80  E-value=2.9e-05  Score=53.64  Aligned_cols=86  Identities=14%  Similarity=0.197  Sum_probs=62.5

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--c
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--H   77 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~   77 (140)
                      ||+.|++|+.+|. ++.+..++++......             .+.....+-.+   .+.....||+|++.+++..=  .
T Consensus        55 la~~~~~v~giD~S~~~i~~ak~~~~~~~~-------------~~~~~~~d~~~---l~~~~~~fD~I~~~~~l~~~~~~  118 (226)
T d1ve3a1          55 LEDYGFEVVGVDISEDMIRKAREYAKSRES-------------NVEFIVGDARK---LSFEDKTFDYVIFIDSIVHFEPL  118 (226)
T ss_dssp             HHHTTCEEEEEESCHHHHHHHHHHHHHTTC-------------CCEEEECCTTS---CCSCTTCEEEEEEESCGGGCCHH
T ss_pred             Hhhhhcccccccccccchhhhhhhhccccc-------------ccccccccccc---ccccCcCceEEEEecchhhCChh
Confidence            4677899999998 7899999887765432             23333334433   23335789999999999762  3


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEEEe
Q 032462           78 LLEPLLQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~~~  102 (140)
                      -...+++-+.++++|+|.+++....
T Consensus       119 d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         119 ELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            4667888899999999998887653

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=97.80  E-value=5.9e-05  Score=52.79  Aligned_cols=82  Identities=12%  Similarity=0.100  Sum_probs=58.6

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      ||..|++|+..|. ++.++..+.+..                .++.+..-++.+.+    ...+||+|++.+++..-+..
T Consensus        38 l~~~g~~v~giD~s~~~i~~a~~~~~----------------~~~~~~~~~~~~~~----~~~~fD~I~~~~vleh~~d~   97 (225)
T d2p7ia1          38 LQEHFNDITCVEASEEAISHAQGRLK----------------DGITYIHSRFEDAQ----LPRRYDNIVLTHVLEHIDDP   97 (225)
T ss_dssp             HTTTCSCEEEEESCHHHHHHHHHHSC----------------SCEEEEESCGGGCC----CSSCEEEEEEESCGGGCSSH
T ss_pred             HHHcCCeEEEEeCcHHHhhhhhcccc----------------cccccccccccccc----cccccccccccceeEecCCH
Confidence            4677899999998 778888775532                23455554444332    24689999999999765555


Q ss_pred             HHHHHHHH-HhcCCCeEEEEEEEe
Q 032462           80 EPLLQTIF-ALSGPKTTILLGYEI  102 (140)
Q Consensus        80 ~~L~~tl~-~ll~~~~~~~~~~~~  102 (140)
                      ..++..+. .+++|+|.+++..+.
T Consensus        98 ~~~l~~i~~~~Lk~gG~l~i~~pn  121 (225)
T d2p7ia1          98 VALLKRINDDWLAEGGRLFLVCPN  121 (225)
T ss_dssp             HHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHhcCCCceEEEEeCC
Confidence            56666665 789999999998764

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=97.79  E-value=5.5e-05  Score=54.66  Aligned_cols=86  Identities=8%  Similarity=0.009  Sum_probs=68.9

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHH
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL   82 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L   82 (140)
                      .|++|+..|. +..++..+++....+.           ..++.+..-++.+.+   .....||+|++.++++.-.....+
T Consensus        89 ~~~~v~gvD~s~~~i~~a~~~~~~~gl-----------~~~v~~~~~d~~~l~---~~~~sfD~V~~~~~l~h~~d~~~~  154 (282)
T d2o57a1          89 FGVSIDCLNIAPVQNKRNEEYNNQAGL-----------ADNITVKYGSFLEIP---CEDNSYDFIWSQDAFLHSPDKLKV  154 (282)
T ss_dssp             HCCEEEEEESCHHHHHHHHHHHHHHTC-----------TTTEEEEECCTTSCS---SCTTCEEEEEEESCGGGCSCHHHH
T ss_pred             CCcEEEEEeccchhhhhhhcccccccc-----------ccccccccccccccc---ccccccchhhccchhhhccCHHHH
Confidence            4889999998 7788999888877653           357888888887653   225789999999999776667789


Q ss_pred             HHHHHHhcCCCeEEEEEEEec
Q 032462           83 LQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      ++.+..+|+|+|.+++....+
T Consensus       155 l~~~~~~LkpgG~l~~~~~~~  175 (282)
T d2o57a1         155 FQECARVLKPRGVMAITDPMK  175 (282)
T ss_dssp             HHHHHHHEEEEEEEEEEEEEE
T ss_pred             HHHHHHhcCCCcEEEEEEeec
Confidence            999999999999988875543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=0.0002  Score=49.76  Aligned_cols=107  Identities=11%  Similarity=-0.015  Sum_probs=73.3

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc--chH
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--LLE   80 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~--~~~   80 (140)
                      .+.+|+..|. +.++...++++..+..            .+++...-+..+.   +.....||+|++.+++..=.  -..
T Consensus        82 ~~~~v~~vD~s~~~l~~ak~~~~~~~~------------~~~~f~~~d~~~~---~~~~~~fD~I~~~~~l~h~~~~~~~  146 (222)
T d2ex4a1          82 LFREVDMVDITEDFLVQAKTYLGEEGK------------RVRNYFCCGLQDF---TPEPDSYDVIWIQWVIGHLTDQHLA  146 (222)
T ss_dssp             TCSEEEEEESCHHHHHHHHHHTGGGGG------------GEEEEEECCGGGC---CCCSSCEEEEEEESCGGGSCHHHHH
T ss_pred             cCCEEEEeecCHHHhhccccccccccc------------ccccccccccccc---ccccccccccccccccccchhhhhh
Confidence            3458999998 8899999988776543            3445555454332   22357999999999997632  345


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHH-HhcCeEEeec
Q 032462           81 PLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMW-KSNFNVKLVP  125 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~R~~------------~~~~~F~~~~-~~~f~v~~v~  125 (140)
                      .+++.+..+++|+|.+++.......            .+.+.+.+.+ +.||++.+..
T Consensus       147 ~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~  204 (222)
T d2ex4a1         147 EFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE  204 (222)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred             hHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence            6888888999999999886443221            0245667777 4699865543

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=97.66  E-value=6e-05  Score=56.07  Aligned_cols=126  Identities=13%  Similarity=0.101  Sum_probs=74.7

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEe---ecCCCccccccCCCccEEEEe------
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL---DWGNEDHIKAVAPPFDYIIGT------   70 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~L---dWg~~~~~~~~~~~~D~Ilas------   70 (140)
                      |+.|| +|+..|. +..+..+++|+++|+..          ..++++..-   +|-+.  ......+||+||.=      
T Consensus       163 a~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~----------~~~~~~i~~d~~~~l~~--~~~~~~~fD~Ii~DPP~f~~  230 (317)
T d2b78a2         163 AMGGAMATTSVDLAKRSRALSLAHFEANHLD----------MANHQLVVMDVFDYFKY--ARRHHLTYDIIIIDPPSFAR  230 (317)
T ss_dssp             HHTTBSEEEEEESCTTHHHHHHHHHHHTTCC----------CTTEEEEESCHHHHHHH--HHHTTCCEEEEEECCCCC--
T ss_pred             HhCCCceEEEecCCHHHHHHHHHHHHHhccc----------CcceEEEEccHHHHHHH--HHhhcCCCCEEEEcChhhcc
Confidence            34688 8999998 77999999999999863          234444332   22111  11235689999852      


Q ss_pred             --ecccC-ccchHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-----hcCeEEeecC--CCCCcccCCCCCCC
Q 032462           71 --DVVYA-EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-----SNFNVKLVPK--AKESTMWGNPLGLY  140 (140)
Q Consensus        71 --DviY~-~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-----~~f~v~~v~~--~~l~~~~~~~~~~~  140 (140)
                        .-+.. ......|+....++++|+|.++++.-.+.-+ .+.|.+.+.     .+..+..+..  .+++.....+++.|
T Consensus       231 ~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~-~~~f~~~v~~a~~~~~~~~~~~~~~~~DfP~~~~~pe~~Y  309 (317)
T d2b78a2         231 NKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT-VSQFKKQIEKGFGKQKHTYLDLQQLPSDFAVNVQDESSNY  309 (317)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-HHHHHHHHHHHHTTCCCEEEEEECCCTTSCCCTTCGGGCC
T ss_pred             chhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCC-HHHHHHHHHHHHHHcCCeEEEeccCCCCCCCCCCCCCCCC
Confidence              11111 0124567777888899999998877665543 345555442     3455544421  23333445555554

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.63  E-value=4.9e-05  Score=56.16  Aligned_cols=83  Identities=17%  Similarity=0.143  Sum_probs=61.3

Q ss_pred             CccCCC-EEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe---ecccCc
Q 032462            1 MALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT---DVVYAE   76 (140)
Q Consensus         1 lA~lGa-~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas---DviY~~   76 (140)
                      +|++|| +|+..|..+.....++|+..|+.           ..+|.+..-+..+.   +....+||+|+..   +.++.+
T Consensus        51 aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~-----------~~~v~~~~~~~~~~---~~~~~~~D~ivs~~~~~~l~~e  116 (316)
T d1oria_          51 AAKAGARKVIGIECSSISDYAVKIVKANKL-----------DHVVTIIKGKVEEV---ELPVEKVDIIISEWMGYCLFYE  116 (316)
T ss_dssp             HHHTTCSEEEEEECSTTHHHHHHHHHHTTC-----------TTTEEEEESCTTTC---CCSSSCEEEEEECCCBBTBTBT
T ss_pred             HHHhCCCEEEEEcCcHHHhhhhhHHHHhCC-----------ccccceEeccHHHc---ccccceeEEEeeeeeeeeeccH
Confidence            367898 89999986667788889998875           35566665554433   2235789999763   444556


Q ss_pred             cchHHHHHHHHHhcCCCeEEE
Q 032462           77 HLLEPLLQTIFALSGPKTTIL   97 (140)
Q Consensus        77 ~~~~~L~~tl~~ll~~~~~~~   97 (140)
                      ..++.++..++++|+|+|.++
T Consensus       117 ~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         117 SMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             CCHHHHHHHHHHHEEEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCCeEEE
Confidence            788999999999999988775

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=97.62  E-value=0.00026  Score=50.34  Aligned_cols=81  Identities=15%  Similarity=0.053  Sum_probs=62.2

Q ss_pred             CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHHH
Q 032462            5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~L   82 (140)
                      +.+++..|.++++...++++.....           ..+++...-|.-++     ...+||+|+.+.++++-  +....+
T Consensus       104 ~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~rv~~~~~D~~~~-----~~~~~D~v~~~~vlh~~~d~~~~~~  167 (253)
T d1tw3a2         104 HVSATVLEMAGTVDTARSYLKDEGL-----------SDRVDVVEGDFFEP-----LPRKADAIILSFVLLNWPDHDAVRI  167 (253)
T ss_dssp             TCEEEEEECTTHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC-----CSSCEEEEEEESCGGGSCHHHHHHH
T ss_pred             eeEEEEccCHHHHHHHHHHHHHhhc-----------ccchhhccccchhh-----cccchhheeeccccccCCchhhHHH
Confidence            4688999998899999999887653           35778887776432     13579999999999763  344577


Q ss_pred             HHHHHHhcCCCeEEEEEEE
Q 032462           83 LQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~  101 (140)
                      ++-+.+.++|+|.++|.-.
T Consensus       168 L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         168 LTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             HHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHhcCCCcEEEEEec
Confidence            8888888999999988654

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=97.58  E-value=3.6e-05  Score=53.82  Aligned_cols=81  Identities=15%  Similarity=0.197  Sum_probs=56.1

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe-ecccCccc
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT-DVVYAEHL   78 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas-DviY~~~~   78 (140)
                      ||..|++|+.+|. +.++..+++|...+               .+   .   ++.+..+.....||+|++. ++++.-.-
T Consensus        60 l~~~~~~v~giD~s~~~l~~a~~~~~~~---------------~~---~---~~~~~l~~~~~~fD~ii~~~~~~~~~~d  118 (246)
T d2avna1          60 LQERGFEVVLVDPSKEMLEVAREKGVKN---------------VV---E---AKAEDLPFPSGAFEAVLALGDVLSYVEN  118 (246)
T ss_dssp             HHTTTCEEEEEESCHHHHHHHHHHTCSC---------------EE---E---CCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred             ccccceEEEEeecccccccccccccccc---------------cc---c---ccccccccccccccceeeecchhhhhhh
Confidence            4678999999998 77888887652111               11   1   1222233335789999985 77765445


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEe
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~  102 (140)
                      .+.+++.+.++++|+|.+++....
T Consensus       119 ~~~~l~~i~r~Lk~gG~~ii~~~~  142 (246)
T d2avna1         119 KDKAFSEIRRVLVPDGLLIATVDN  142 (246)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             HHHHHHHHHhhcCcCcEEEEEECC
Confidence            567888899999999999887754

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.57  E-value=9.8e-05  Score=51.90  Aligned_cols=82  Identities=17%  Similarity=0.146  Sum_probs=57.7

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe-ecccCc--
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT-DVVYAE--   76 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas-DviY~~--   76 (140)
                      ||++|++|+..|. +.++..+++|...++.             ++.+..-++.+-   + ...+||+|+.+ ..++.-  
T Consensus        59 l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~-------------~i~~~~~d~~~l---~-~~~~fD~I~~~~~~~~~~~~  121 (251)
T d1wzna1          59 LAERGYEVVGLDLHEEMLRVARRKAKERNL-------------KIEFLQGDVLEI---A-FKNEFDAVTMFFSTIMYFDE  121 (251)
T ss_dssp             HHHTTCEEEEEESCHHHHHHHHHHHHHTTC-------------CCEEEESCGGGC---C-CCSCEEEEEECSSGGGGSCH
T ss_pred             hcccceEEEEEeeccccccccccccccccc-------------cchheehhhhhc---c-cccccchHhhhhhhhhcCCh
Confidence            4678999999998 7899999999876542             345555454432   2 23589999987 444443  


Q ss_pred             cchHHHHHHHHHhcCCCeEEEEE
Q 032462           77 HLLEPLLQTIFALSGPKTTILLG   99 (140)
Q Consensus        77 ~~~~~L~~tl~~ll~~~~~~~~~   99 (140)
                      +....+++.+.+.|+|+|.+++.
T Consensus       122 ~~~~~~L~~~~~~LkpgG~lii~  144 (251)
T d1wzna1         122 EDLRKLFSKVAEALKPGGVFITD  144 (251)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEE
Confidence            23446777777888999988774

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.51  E-value=0.00015  Score=53.68  Aligned_cols=83  Identities=20%  Similarity=0.151  Sum_probs=61.8

Q ss_pred             CccCCC-EEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecc---cCc
Q 032462            1 MALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV---YAE   76 (140)
Q Consensus         1 lA~lGa-~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDvi---Y~~   76 (140)
                      +|++|| +|++.|..+.+...+++++.|+.           ..++.+..-+..+-+   ....+||+|++.-+.   ..+
T Consensus        56 aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~-----------~~~i~~i~~~~~~l~---~~~~~~D~i~se~~~~~~~~e  121 (328)
T d1g6q1_          56 AAKHGAKHVIGVDMSSIIEMAKELVELNGF-----------SDKITLLRGKLEDVH---LPFPKVDIIISEWMGYFLLYE  121 (328)
T ss_dssp             HHHTCCSEEEEEESSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTSC---CSSSCEEEEEECCCBTTBSTT
T ss_pred             HHHhCCCEEEEEeCCHHHHHHHHHHHHhCc-----------cccceEEEeehhhcc---CcccceeEEEEEecceeeccc
Confidence            367898 89999997778888999988875           356666665554432   225789999985444   456


Q ss_pred             cchHHHHHHHHHhcCCCeEEE
Q 032462           77 HLLEPLLQTIFALSGPKTTIL   97 (140)
Q Consensus        77 ~~~~~L~~tl~~ll~~~~~~~   97 (140)
                      ...+.++..++++|+|+|.++
T Consensus       122 ~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         122 SMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CCHHHHHHHHHHHEEEEEEEE
T ss_pred             hhHHHHHHHHHhccCCCeEEE
Confidence            678889999999999887763

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=97.50  E-value=0.00032  Score=50.96  Aligned_cols=84  Identities=13%  Similarity=0.133  Sum_probs=62.0

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe------------e
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT------------D   71 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas------------D   71 (140)
                      .++|+++|. ++.+...++|++.|+.           ...+.+..-+|.+..  +....+||+||+-            +
T Consensus       133 ~~~v~a~Dis~~Al~~A~~Na~~~~~-----------~~~~~i~~~~~~~~~--~~~~~~fDlIVsNPPYI~~~~~l~~~  199 (271)
T d1nv8a_         133 DAIVFATDVSSKAVEIARKNAERHGV-----------SDRFFVRKGEFLEPF--KEKFASIEMILSNPPYVKSSAHLPKD  199 (271)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHHHTTC-----------TTSEEEEESSTTGGG--GGGTTTCCEEEECCCCBCGGGSCTTS
T ss_pred             cceeeechhhhhHHHHHHHHHHHcCC-----------CceeEEeeccccccc--ccccCcccEEEEcccccCccccccee
Confidence            469999998 8899999999999975           357788888898653  2335689999874            5


Q ss_pred             cccCccc--------hHHHHHHHHHhcCCCeEEEEEEE
Q 032462           72 VVYAEHL--------LEPLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        72 viY~~~~--------~~~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      +.|+|..        .+-.-+.++++++|+|.+++-..
T Consensus       200 ~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig  237 (271)
T d1nv8a_         200 VLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG  237 (271)
T ss_dssp             CCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred             eeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence            6666543        23344456788899998777554

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.49  E-value=0.0002  Score=51.72  Aligned_cols=106  Identities=15%  Similarity=0.177  Sum_probs=66.5

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      |+.|+ +|++.|. ++.+..+++|+++|+.           .+.+++..-|-.+..    ....||.|+.-..-+...  
T Consensus       126 a~~~~~~V~avd~n~~a~~~~~~N~~~n~l-----------~~~v~~~~~D~~~~~----~~~~~D~Ii~~~p~~~~~--  188 (260)
T d2frna1         126 AVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----------EDRMSAYNMDNRDFP----GENIADRILMGYVVRTHE--  188 (260)
T ss_dssp             HHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----------TTTEEEECSCTTTCC----CCSCEEEEEECCCSSGGG--
T ss_pred             HHhCCcEEEEecCCHHHHHHHHHHHHHhCC-----------CceEEEEEcchHHhc----cCCCCCEEEECCCCchHH--
Confidence            55675 9999998 8899999999999986           356777766654432    146799888654433333  


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEecC----hhHHHHHHHHH-HhcCeEEeecC
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIRS----TSVHEQMLQMW-KSNFNVKLVPK  126 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R~----~~~~~~F~~~~-~~~f~v~~v~~  126 (140)
                        ++.....+++++|.+.+-.-...    ....+.+.+.+ ..|+.++.+..
T Consensus       189 --~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~~~  238 (260)
T d2frna1         189 --FIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLNE  238 (260)
T ss_dssp             --GHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEEE
T ss_pred             --HHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEEEEE
Confidence              34444456778887643222222    12234444445 45888876543

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=97.45  E-value=0.00011  Score=51.78  Aligned_cols=82  Identities=13%  Similarity=0.052  Sum_probs=57.9

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe-ecccC---
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT-DVVYA---   75 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas-DviY~---   75 (140)
                      ||++|.+|+..|. +++++..++++..++             .++++..-|+.+.+    ...+||+|++. ..++.   
T Consensus        55 l~~~g~~v~GvD~S~~ml~~A~~~~~~~~-------------~~v~~~~~d~~~~~----~~~~fD~i~~~~~~~~~~~~  117 (246)
T d1y8ca_          55 LCPKFKNTWAVDLSQEMLSEAENKFRSQG-------------LKPRLACQDISNLN----INRKFDLITCCLDSTNYIID  117 (246)
T ss_dssp             HGGGSSEEEEECSCHHHHHHHHHHHHHTT-------------CCCEEECCCGGGCC----CSCCEEEEEECTTGGGGCCS
T ss_pred             HHHhCCccEeeccchhhhhhccccccccC-------------ccceeeccchhhhc----ccccccccceeeeeeeccCC
Confidence            5788999999998 789999988876554             24555555554432    24689999975 44432   


Q ss_pred             ccchHHHHHHHHHhcCCCeEEEEE
Q 032462           76 EHLLEPLLQTIFALSGPKTTILLG   99 (140)
Q Consensus        76 ~~~~~~L~~tl~~ll~~~~~~~~~   99 (140)
                      ++-...+++.+.++|+|+|.+++.
T Consensus       118 ~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_         118 SDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             HHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCeEEEEE
Confidence            335556788888889999987753

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00037  Score=48.96  Aligned_cols=125  Identities=12%  Similarity=0.036  Sum_probs=72.9

Q ss_pred             CccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCC--------CCC-------CCCCc-eEEEEeecCCCcc---ccc
Q 032462            1 MALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMN--------PGS-------DLLGS-IQAVELDWGNEDH---IKA   59 (140)
Q Consensus         1 lA~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~--------~~~-------~~~~~-v~~~~LdWg~~~~---~~~   59 (140)
                      +|..|+ +|+.+|. +..+..+++++..+........        .+.       ..... .......+.....   .+.
T Consensus        69 ~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (257)
T d2a14a1          69 AACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPA  148 (257)
T ss_dssp             TGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTC
T ss_pred             HhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhcccccccccccccccc
Confidence            345666 7999998 7899999999886654321000        000       00000 0111222221111   122


Q ss_pred             cCCCccEEEEeecccC----ccchHHHHHHHHHhcCCCeEEEEEEEecCh-------------hHHHHHHHHH-HhcCeE
Q 032462           60 VAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEIRST-------------SVHEQMLQMW-KSNFNV  121 (140)
Q Consensus        60 ~~~~~D~IlasDviY~----~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~-------------~~~~~F~~~~-~~~f~v  121 (140)
                      ....||+|++..|+-.    ++....+++.+.++++|+|.++++...+..             -+.+.+.+.+ +.||++
T Consensus       149 ~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v  228 (257)
T d2a14a1         149 VLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDI  228 (257)
T ss_dssp             CCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred             cCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHCCCEE
Confidence            3578999999988732    245667888888999999998886643321             0234555566 469987


Q ss_pred             Eeec
Q 032462          122 KLVP  125 (140)
Q Consensus       122 ~~v~  125 (140)
                      +.+.
T Consensus       229 ~~~~  232 (257)
T d2a14a1         229 EQLL  232 (257)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7763

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=97.39  E-value=4.8e-05  Score=51.60  Aligned_cols=87  Identities=21%  Similarity=0.108  Sum_probs=58.2

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCc-cccccCCCccEEEEeecccCccch
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~-~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      +..|++|++.|. +..+..+++|++.|...           .+  +...+-.... .......+||+|+. |-=|..+..
T Consensus        60 ~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~-----------~~--v~~~~~d~~~~~~~~~~~~fD~If~-DPPY~~~~~  125 (171)
T d1ws6a1          60 ASEGWEAVLVEKDPEAVRLLKENVRRTGLG-----------AR--VVALPVEVFLPEAKAQGERFTVAFM-APPYAMDLA  125 (171)
T ss_dssp             HHTTCEEEEECCCHHHHHHHHHHHHHHTCC-----------CE--EECSCHHHHHHHHHHTTCCEEEEEE-CCCTTSCTT
T ss_pred             hhccchhhhcccCHHHHhhhhHHHHhhccc-----------cc--eeeeehhcccccccccCCccceeEE-ccccccCHH
Confidence            457999999998 88999999999998652           22  2222221100 01123568998875 887877776


Q ss_pred             HHHHHHHH-HhcCCCeEEEEEEEe
Q 032462           80 EPLLQTIF-ALSGPKTTILLGYEI  102 (140)
Q Consensus        80 ~~L~~tl~-~ll~~~~~~~~~~~~  102 (140)
                      +.+...+. .+++|+|.+++-+..
T Consensus       126 ~~l~~l~~~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1         126 ALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             HHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             HHHHHHHHcCCcCCCeEEEEEecC
Confidence            66666665 467889988776553

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.38  E-value=0.0001  Score=54.60  Aligned_cols=89  Identities=18%  Similarity=0.100  Sum_probs=58.0

Q ss_pred             ccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEe---------
Q 032462            2 ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGT---------   70 (140)
Q Consensus         2 A~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~~~D~Ilas---------   70 (140)
                      |+.||+||..|. +..+...++|+++|+..          ..++++..-|-.+.-. ......+||+||.=         
T Consensus       151 a~~GA~V~~VD~s~~al~~a~~N~~ln~~~----------~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~  220 (309)
T d2igta1         151 AAAGAEVTHVDASKKAIGWAKENQVLAGLE----------QAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTH  220 (309)
T ss_dssp             HHTTCEEEEECSCHHHHHHHHHHHHHHTCT----------TSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTT
T ss_pred             HhCCCeEEEEeChHHHHHHHHHhhhhhccc----------CCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCccccccc
Confidence            456899999998 78999999999999853          2345555433221100 01235789999851         


Q ss_pred             ecccC-ccchHHHHHHHHHhcCCCeEEEEEE
Q 032462           71 DVVYA-EHLLEPLLQTIFALSGPKTTILLGY  100 (140)
Q Consensus        71 DviY~-~~~~~~L~~tl~~ll~~~~~~~~~~  100 (140)
                      ...+. ......|+..+..+++|++.++++.
T Consensus       221 ~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         221 GEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             CCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             chhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            11111 2356778888899999988655443

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00031  Score=49.13  Aligned_cols=124  Identities=18%  Similarity=0.134  Sum_probs=77.3

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccC-CCC----CCCCCceEEEEeecCCCccccccCCCccEEEEeeccc
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQM-NPG----SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVY   74 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~-~~~----~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY   74 (140)
                      ||..|++||..|. +..+..++.+........... .+.    ......+....-|.-+..  +.....||+|+.+-++.
T Consensus        63 LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~--~~~~~~fd~i~~~~~l~  140 (229)
T d2bzga1          63 FADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLP--RTNIGKFDMIWDRGALV  140 (229)
T ss_dssp             HHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGG--GSCCCCEEEEEESSSTT
T ss_pred             HHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhcc--ccccCceeEEEEEEEEE
Confidence            5789999999998 778887776655432211100 000    012245555555554332  22356899999888776


Q ss_pred             C--ccchHHHHHHHHHhcCCCeEEEEEEEecChh---------HHHHHHHHHHhcCeEEeecC
Q 032462           75 A--EHLLEPLLQTIFALSGPKTTILLGYEIRSTS---------VHEQMLQMWKSNFNVKLVPK  126 (140)
Q Consensus        75 ~--~~~~~~L~~tl~~ll~~~~~~~~~~~~R~~~---------~~~~F~~~~~~~f~v~~v~~  126 (140)
                      .  ++..+..++.+.++++|+|.+++....+...         +.....+.++.+|.++.+..
T Consensus       141 ~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~~~~i~~le~  203 (229)
T d2bzga1         141 AINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGKICNIRCLEK  203 (229)
T ss_dssp             TSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTTTEEEEEEEE
T ss_pred             eccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcCCCEEEEEEE
Confidence            4  4678889999999999999887766554321         12233344477888877644

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.00063  Score=49.42  Aligned_cols=98  Identities=16%  Similarity=0.266  Sum_probs=65.8

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe-------------
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT-------------   70 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas-------------   70 (140)
                      .++|+++|. +..+...++|++.|+.            .++.+..-||.++.    ...+||+|++-             
T Consensus       132 ~~~v~avDis~~Al~~A~~Na~~~~~------------~~v~~~~~d~~~~~----~~~~fDlIvsNPPYi~~~~~~~~~  195 (274)
T d2b3ta1         132 DCEIIAVDRMPDAVSLAQRNAQHLAI------------KNIHILQSDWFSAL----AGQQFAMIVSNPPYIDEQDPHLQQ  195 (274)
T ss_dssp             TSEEEEECSSHHHHHHHHHHHHHHTC------------CSEEEECCSTTGGG----TTCCEEEEEECCCCBCTTCHHHHS
T ss_pred             cceeeeccchhHHHhHHHHHHHHhCc------------ccceeeeccccccc----CCCceeEEEecchhhhhhhhcccc
Confidence            469999998 8899999999998874            35888888887652    24689999873             


Q ss_pred             -ecccCcc-----------chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHHhcCe
Q 032462           71 -DVVYAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN  120 (140)
Q Consensus        71 -DviY~~~-----------~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~~~f~  120 (140)
                       .+-|++.           .+..++.-..++++|+|.+++-...........+++  +.||.
T Consensus       196 ~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~--~~gf~  255 (274)
T d2b3ta1         196 GDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFI--LAGYH  255 (274)
T ss_dssp             SGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHH--HTTCT
T ss_pred             cccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHH--HCCCC
Confidence             2223332           234466666667889999888655443332333322  45775

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00041  Score=50.73  Aligned_cols=83  Identities=18%  Similarity=0.156  Sum_probs=55.1

Q ss_pred             CccCCC-EEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe---ecccCc
Q 032462            1 MALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT---DVVYAE   76 (140)
Q Consensus         1 lA~lGa-~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas---DviY~~   76 (140)
                      +|+.|| +|++.|..+.....++++..|..           ..++.+..-+-.+-   +....+||+|++.   ..+..+
T Consensus        53 aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~-----------~~~i~~~~~~~~~l---~~~~~~~D~Ivse~~~~~~~~e  118 (311)
T d2fyta1          53 AAKAGAKKVLGVDQSEILYQAMDIIRLNKL-----------EDTITLIKGKIEEV---HLPVEKVDVIISEWMGYFLLFE  118 (311)
T ss_dssp             HHHTTCSEEEEEESSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTS---CCSCSCEEEEEECCCBTTBTTT
T ss_pred             HHHcCCCEEEEEeCHHHHHHHHHHHHHhCC-----------CccceEEEeeHHHh---cCccccceEEEEeeeeeecccc
Confidence            367898 89999985544456666666653           35666665443332   2235789999963   223334


Q ss_pred             cchHHHHHHHHHhcCCCeEEE
Q 032462           77 HLLEPLLQTIFALSGPKTTIL   97 (140)
Q Consensus        77 ~~~~~L~~tl~~ll~~~~~~~   97 (140)
                      ...+.++...+++++|+|.++
T Consensus       119 ~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         119 SMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             CHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccHHHHHHHHhcCCCCcEEe
Confidence            567788888889999888775

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=97.25  E-value=0.00063  Score=49.10  Aligned_cols=80  Identities=14%  Similarity=0.054  Sum_probs=61.2

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      |++|+.+|. +..++..++|...+.             .++....-|..+.+    ...+||+|++..++..-.....++
T Consensus        52 ~~~v~giD~s~~~l~~a~~~~~~~~-------------~~~~f~~~d~~~~~----~~~~fD~v~~~~~l~~~~d~~~~l  114 (281)
T d2gh1a1          52 GSKYTGIDSGETLLAEARELFRLLP-------------YDSEFLEGDATEIE----LNDKYDIAICHAFLLHMTTPETML  114 (281)
T ss_dssp             TCEEEEEECCHHHHHHHHHHHHSSS-------------SEEEEEESCTTTCC----CSSCEEEEEEESCGGGCSSHHHHH
T ss_pred             CCEEEEEecchhHhhhhhccccccc-------------cccccccccccccc----ccCCceEEEEehhhhcCCCHHHHH
Confidence            679999998 789999998886653             24555555554332    135799999999998766677888


Q ss_pred             HHHHHhcCCCeEEEEEEE
Q 032462           84 QTIFALSGPKTTILLGYE  101 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~  101 (140)
                      +-+.+.++|+|.+++.-.
T Consensus       115 ~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1         115 QKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             HHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHcCcCcEEEEEEC
Confidence            999999999999887654

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.25  E-value=0.00013  Score=52.91  Aligned_cols=93  Identities=14%  Similarity=0.115  Sum_probs=64.1

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEee-cc-cCc-
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTD-VV-YAE-   76 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasD-vi-Y~~-   76 (140)
                      ||..|++|+..|. +.+|..+++|...+.....        .....+...+|-..+........||.|++.- ++ |.+ 
T Consensus        74 la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~  145 (292)
T d1xvaa_          74 LVEEGFSVTSVDASDKMLKYALKERWNRRKEPA--------FDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPD  145 (292)
T ss_dssp             HHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHH--------HHTCEEEECCGGGHHHHSCCTTCEEEEEECSSCGGGSCC
T ss_pred             HHHcCCeeeeccCchHHHHHHHHHHHhcccccc--------cceeeeeeccccccccccCCCCCceEEEEecCchhhcCC
Confidence            4678999999998 8899999999887764321        1345566777754332112256899998754 33 322 


Q ss_pred             -----cchHHHHHHHHHhcCCCeEEEEEEE
Q 032462           77 -----HLLEPLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        77 -----~~~~~L~~tl~~ll~~~~~~~~~~~  101 (140)
                           +-...+++-+.+.|+|+|.+++...
T Consensus       146 ~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         146 SKGDQSEHRLALKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             TTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence                 2345688888889999999888654

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.13  E-value=0.0045  Score=43.46  Aligned_cols=108  Identities=10%  Similarity=-0.015  Sum_probs=73.1

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      ..|+..|. +.++..++++++.+              +++.....+...+....  ...+|+++....++......-++.
T Consensus        99 g~V~aVDiS~~~i~~a~~~a~~~--------------~ni~~i~~d~~~~~~~~--~~~~~v~~i~~~~~~~~~~~~~l~  162 (230)
T d1g8sa_          99 GIVYAIEYAPRIMRELLDACAER--------------ENIIPILGDANKPQEYA--NIVEKVDVIYEDVAQPNQAEILIK  162 (230)
T ss_dssp             SEEEEEESCHHHHHHHHHHTTTC--------------TTEEEEECCTTCGGGGT--TTCCCEEEEEECCCSTTHHHHHHH
T ss_pred             CEEEEEeCcHHHHHHHHHHHhhh--------------cccceEEEeeccCcccc--cccceeEEeeccccchHHHHHHHH
Confidence            48999998 78888887764332              45555666666654332  345677666666777778888899


Q ss_pred             HHHHhcCCCeEEEEEEEecCh-------hHHHHHHHHH-HhcCeE-EeecCCCC
Q 032462           85 TIFALSGPKTTILLGYEIRST-------SVHEQMLQMW-KSNFNV-KLVPKAKE  129 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R~~-------~~~~~F~~~~-~~~f~v-~~v~~~~l  129 (140)
                      .+..+|+|+|.++++.+.|..       ..++.-.+.+ +.||++ +.+..+-.
T Consensus       163 ~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~idL~py  216 (230)
T d1g8sa_         163 NAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEPF  216 (230)
T ss_dssp             HHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEECTTT
T ss_pred             HHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCCC
Confidence            999999999999998877753       1233444556 469985 44554433

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.0007  Score=48.42  Aligned_cols=84  Identities=18%  Similarity=0.230  Sum_probs=59.1

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc--------ccccCCCccEEEEeecccCc
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH--------IKAVAPPFDYIIGTDVVYAE   76 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~--------~~~~~~~~D~IlasDviY~~   76 (140)
                      .+++..|. +..+...+++++....           ...+   .++|.....        .+....+||+|+++.++|.-
T Consensus        71 ~~~~~vD~s~~~l~~a~~~~~~~~~-----------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~  136 (280)
T d1jqea_          71 INNEVVEPSAEQIAKYKELVAKISN-----------LENV---KFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV  136 (280)
T ss_dssp             EEEEEECCCHHHHHHHHHHHTTCCS-----------CTTE---EEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGC
T ss_pred             eEEEEEeCcHHHHHHHHHHHhhccc-----------cccc---cccchhhhhhhhcchhcccCCCCceeEEEEccceecC
Confidence            36788897 6788888888754321           1222   234433221        11236789999999999998


Q ss_pred             cchHHHHHHHHHhcCCCeEEEEEEEec
Q 032462           77 HLLEPLLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        77 ~~~~~L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      .-.+.+++.+.++++|+|.+++.....
T Consensus       137 ~d~~~~l~~l~~~LkpgG~l~i~~~~~  163 (280)
T d1jqea_         137 KDIPATLKFFHSLLGTNAKMLIIVVSG  163 (280)
T ss_dssp             SCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             CCHHHHHHHHHhhCCCCCEEEEEEecC
Confidence            878899999999999999888775533

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=97.07  E-value=0.0013  Score=46.87  Aligned_cols=102  Identities=9%  Similarity=0.005  Sum_probs=64.7

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEP   81 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~   81 (140)
                      +.+|++.|. +.+++..+++...              .+.+++..-+-   ...+.....||+|+++.++..=  .....
T Consensus       116 ~~~v~~vD~s~~~l~~a~~~~~~--------------~~~~~~~~~d~---~~~~~~~~~fD~I~~~~vl~hl~d~d~~~  178 (254)
T d1xtpa_         116 YATTDLLEPVKHMLEEAKRELAG--------------MPVGKFILASM---ETATLPPNTYDLIVIQWTAIYLTDADFVK  178 (254)
T ss_dssp             CSEEEEEESCHHHHHHHHHHTTT--------------SSEEEEEESCG---GGCCCCSSCEEEEEEESCGGGSCHHHHHH
T ss_pred             CceEEEEcCCHHHHHhhhccccc--------------cccceeEEccc---cccccCCCccceEEeeccccccchhhhHH
Confidence            348999998 7788888766431              13344443332   2222235789999999999763  23456


Q ss_pred             HHHHHHHhcCCCeEEEEEEEecCh-------------hHHHHHHHHH-HhcCeEEe
Q 032462           82 LLQTIFALSGPKTTILLGYEIRST-------------SVHEQMLQMW-KSNFNVKL  123 (140)
Q Consensus        82 L~~tl~~ll~~~~~~~~~~~~R~~-------------~~~~~F~~~~-~~~f~v~~  123 (140)
                      +++-+++.++|+|.+++.......             .+.+.|.+.+ +.||.+.+
T Consensus       179 ~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~  234 (254)
T d1xtpa_         179 FFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVK  234 (254)
T ss_dssp             HHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEE
Confidence            677777888999998886543221             0245666666 46998654

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.04  E-value=0.00079  Score=45.75  Aligned_cols=87  Identities=18%  Similarity=0.183  Sum_probs=62.2

Q ss_pred             cCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEE---eecCCCccccccCCCccEEEEeecccCcc
Q 032462            3 LLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE---LDWGNEDHIKAVAPPFDYIIGTDVVYAEH   77 (140)
Q Consensus         3 ~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~---LdWg~~~~~~~~~~~~D~IlasDviY~~~   77 (140)
                      ..|| +|++-|. ...+..+++|++..+..          .....+..   ++|-...   ....+||+| -.|-=|...
T Consensus        63 SRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~----------~~~~~~~~~d~~~~l~~~---~~~~~fDlI-FlDPPY~~~  128 (183)
T d2ifta1          63 SRQAKKVTFLELDKTVANQLKKNLQTLKCS----------SEQAEVINQSSLDFLKQP---QNQPHFDVV-FLDPPFHFN  128 (183)
T ss_dssp             HTTCSEEEEECSCHHHHHHHHHHHHHTTCC----------TTTEEEECSCHHHHTTSC---CSSCCEEEE-EECCCSSSC
T ss_pred             eecceeeEEeecccchhhhHhhHHhhhccc----------cccccccccccccccccc---ccCCcccEE-EechhHhhh
Confidence            4688 8999998 78999999999976542          22333333   2333321   224579977 679989999


Q ss_pred             chHHHHHHHHH--hcCCCeEEEEEEEec
Q 032462           78 LLEPLLQTIFA--LSGPKTTILLGYEIR  103 (140)
Q Consensus        78 ~~~~L~~tl~~--ll~~~~~~~~~~~~R  103 (140)
                      ..+.++..|..  ++++++.+++-+..+
T Consensus       129 ~~~~~l~~l~~~~~L~~~~liiiE~~~~  156 (183)
T d2ifta1         129 LAEQAISLLCENNWLKPNALIYVETEKD  156 (183)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             hHHHHHHHHHHhCCcCCCcEEEEEecCC
Confidence            89999998876  578888888866544

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=97.00  E-value=0.0011  Score=46.82  Aligned_cols=88  Identities=10%  Similarity=-0.065  Sum_probs=63.6

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC----
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA----   75 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~----   75 (140)
                      ++.|. +|+..|. ++.++.+++....++.           ..++....-|-.....  .....||+|++..++..    
T Consensus        43 ~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~-----------~~~v~f~~~D~~~~~~--~~~~~fD~V~~~~~l~~~~~~  109 (252)
T d1ri5a_          43 ERAGIGEYYGVDIAEVSINDARVRARNMKR-----------RFKVFFRAQDSYGRHM--DLGKEFDVISSQFSFHYAFST  109 (252)
T ss_dssp             HHHTCSEEEEEESCHHHHHHHHHHHHTSCC-----------SSEEEEEESCTTTSCC--CCSSCEEEEEEESCGGGGGSS
T ss_pred             HHcCCCeEEEecCCHHHHHHHHHHHHhcCC-----------CcceEEEEcchhhhcc--cccccceEEEEcceeeecCCC
Confidence            44575 8999998 7888888877655432           3467777776643321  13568999999998854    


Q ss_pred             ccchHHHHHHHHHhcCCCeEEEEEEEe
Q 032462           76 EHLLEPLLQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        76 ~~~~~~L~~tl~~ll~~~~~~~~~~~~  102 (140)
                      ++....+++.+.++|+|+|.+++....
T Consensus       110 ~~~~~~~l~~i~~~Lk~gG~~i~~~~~  136 (252)
T d1ri5a_         110 SESLDIAQRNIARHLRPGGYFIMTVPS  136 (252)
T ss_dssp             HHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHhceeCCCCEEEEEecC
Confidence            245678888899999999999886653

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=96.96  E-value=0.00026  Score=47.36  Aligned_cols=126  Identities=14%  Similarity=-0.025  Sum_probs=74.6

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--c
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--H   77 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~   77 (140)
                      ||..|++|+..|. +..+...+++............-.......+....-++.+...  .....||+|+.+.++..-  +
T Consensus        38 la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~--~~~~~~D~i~~~~~l~~l~~~  115 (201)
T d1pjza_          38 LSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA--RDIGHCAAFYDRAAMIALPAD  115 (201)
T ss_dssp             HHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH--HHHHSEEEEEEESCGGGSCHH
T ss_pred             HHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc--ccccceeEEEEEeeeEecchh
Confidence            5778999999998 7799998877743222110000000012233444445544321  124679999998887653  3


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEEEecChh--------HHHHHHHHH-HhcCeEEeecCCC
Q 032462           78 LLEPLLQTIFALSGPKTTILLGYEIRSTS--------VHEQMLQMW-KSNFNVKLVPKAK  128 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~~~R~~~--------~~~~F~~~~-~~~f~v~~v~~~~  128 (140)
                      .....++-+.+.++|+|.+++....+...        .....++.+ +.+|+++.+....
T Consensus       116 ~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~l~~~~~~i~~~~~~~  175 (201)
T d1pjza_         116 MRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWEVTKVGGQD  175 (201)
T ss_dssp             HHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCSSEEEEEEEESS
T ss_pred             hhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHHHhCCCcEEEEEEEec
Confidence            46778888888999999987765544321        112233333 6688877665443

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.001  Score=45.11  Aligned_cols=86  Identities=14%  Similarity=0.132  Sum_probs=59.5

Q ss_pred             cCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchH
Q 032462            3 LLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         3 ~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      +.|| +|++-|. +..+..+++|++.+..            .++++..-|.-+.  ......+||+|+ +|-=|.....+
T Consensus        63 srGa~~v~~VE~~~~a~~~~k~N~~~~~~------------~~~~ii~~d~~~~--l~~~~~~fDlIf-~DPPY~~~~~~  127 (183)
T d2fpoa1          63 SRYAAGATLIEMDRAVSQQLIKNLATLKA------------GNARVVNSNAMSF--LAQKGTPHNIVF-VDPPFRRGLLE  127 (183)
T ss_dssp             HTTCSEEEEECSCHHHHHHHHHHHHHTTC------------CSEEEECSCHHHH--HSSCCCCEEEEE-ECCSSSTTTHH
T ss_pred             ecCcceeEEEEEeechhhHHHHHHhhccc------------cceeeeeeccccc--ccccccccCEEE-EcCccccchHH
Confidence            4688 8999998 8899999999987653            2333332221111  122356899776 47778888888


Q ss_pred             HHHHHHHH--hcCCCeEEEEEEEec
Q 032462           81 PLLQTIFA--LSGPKTTILLGYEIR  103 (140)
Q Consensus        81 ~L~~tl~~--ll~~~~~~~~~~~~R  103 (140)
                      .++..|..  ++++++.+++-+..+
T Consensus       128 ~~l~~l~~~~~L~~~~iIiiE~~~~  152 (183)
T d2fpoa1         128 ETINLLEDNGWLADEALIYVESEVE  152 (183)
T ss_dssp             HHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             HHHHHHHHCCCCCCCeEEEEEecCc
Confidence            88888876  478888887755433

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.83  E-value=0.013  Score=40.24  Aligned_cols=106  Identities=14%  Similarity=0.122  Sum_probs=65.1

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      .+|+..|. +..+..++++.+..              +++....-+-..+.........+|+|. +| ++.+.....+++
T Consensus        81 g~V~gvDis~~~i~~a~~~a~~~--------------~ni~~i~~d~~~~~~~~~~~~~vd~v~-~~-~~~~~~~~~~l~  144 (209)
T d1nt2a_          81 GIIYAVEYSAKPFEKLLELVRER--------------NNIIPLLFDASKPWKYSGIVEKVDLIY-QD-IAQKNQIEILKA  144 (209)
T ss_dssp             SEEEEECCCHHHHHHHHHHHHHC--------------SSEEEECSCTTCGGGTTTTCCCEEEEE-EC-CCSTTHHHHHHH
T ss_pred             CeEEEEeCCHHHHHHHHHHhhcc--------------CCceEEEeeccCccccccccceEEEEE-ec-ccChhhHHHHHH
Confidence            38999998 88999998887653              234444444444332222233444443 34 455566677888


Q ss_pred             HHHHhcCCCeEEEEEEEecChh-------HHHHHHHHHHhcCeEEe-ecCC
Q 032462           85 TIFALSGPKTTILLGYEIRSTS-------VHEQMLQMWKSNFNVKL-VPKA  127 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R~~~-------~~~~F~~~~~~~f~v~~-v~~~  127 (140)
                      -+...++|+|.++++...|...       +.....+.++++|++.+ +..+
T Consensus       145 ~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~gf~i~E~i~L~  195 (209)
T d1nt2a_         145 NAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVKHGSLM  195 (209)
T ss_dssp             HHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEEECT
T ss_pred             HHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEEccC
Confidence            8899999999999987765421       12233333457998654 4433

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.0024  Score=45.46  Aligned_cols=121  Identities=14%  Similarity=0.074  Sum_probs=67.3

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccC---------CCCCC-------CCCceEEEEeecCCCcc-----ccccCC
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQM---------NPGSD-------LLGSIQAVELDWGNEDH-----IKAVAP   62 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~---------~~~~~-------~~~~v~~~~LdWg~~~~-----~~~~~~   62 (140)
                      +.+|+.+|. +..++.+++++..........         .+...       .........+.|.-...     .+....
T Consensus        77 ~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~  156 (263)
T d2g72a1          77 FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPL  156 (263)
T ss_dssp             CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCS
T ss_pred             CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcC
Confidence            458999998 789999998875432211100         00000       00011223344432111     111245


Q ss_pred             CccEEEEeecc-cCc---cchHHHHHHHHHhcCCCeEEEEEEEecCh-------------hHHHHHHHHH-HhcCeEEee
Q 032462           63 PFDYIIGTDVV-YAE---HLLEPLLQTIFALSGPKTTILLGYEIRST-------------SVHEQMLQMW-KSNFNVKLV  124 (140)
Q Consensus        63 ~~D~IlasDvi-Y~~---~~~~~L~~tl~~ll~~~~~~~~~~~~R~~-------------~~~~~F~~~~-~~~f~v~~v  124 (140)
                      .||+|+++=|+ +-+   +.....++-+..+++|+|.+++....+..             -+.+...+.+ +.||++..+
T Consensus       157 ~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~  236 (263)
T d2g72a1         157 PADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDL  236 (263)
T ss_dssp             SEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             ccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCCCeEEEE
Confidence            79999998877 322   34566777777889999998886665441             0233444455 469997754


Q ss_pred             c
Q 032462          125 P  125 (140)
Q Consensus       125 ~  125 (140)
                      .
T Consensus       237 ~  237 (263)
T d2g72a1         237 R  237 (263)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.80  E-value=0.014  Score=40.72  Aligned_cols=106  Identities=17%  Similarity=0.089  Sum_probs=64.9

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      .+|+..|. +..+..++++++..              +++.....+=+.+...+.....+|+|+. |+ ..+.....++.
T Consensus        99 G~V~aVD~s~~~l~~a~~~a~~~--------------~~~~~i~~d~~~~~~~~~~~~~vD~i~~-d~-~~~~~~~~~l~  162 (227)
T d1g8aa_          99 GKIFGIEFSPRVLRELVPIVEER--------------RNIVPILGDATKPEEYRALVPKVDVIFE-DV-AQPTQAKILID  162 (227)
T ss_dssp             SEEEEEESCHHHHHHHHHHHSSC--------------TTEEEEECCTTCGGGGTTTCCCEEEEEE-CC-CSTTHHHHHHH
T ss_pred             CEEEEEeCcHHHHHHHHHHHHhc--------------CCceEEEEECCCcccccccccceEEEEE-Ec-cccchHHHHHH
Confidence            58999998 88899888876433              2233333222233222223456777664 54 44566677888


Q ss_pred             HHHHhcCCCeEEEEEEEecCh------hHHHHHHHHH-HhcCeE-EeecCC
Q 032462           85 TIFALSGPKTTILLGYEIRST------SVHEQMLQMW-KSNFNV-KLVPKA  127 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R~~------~~~~~F~~~~-~~~f~v-~~v~~~  127 (140)
                      -+..+++|+|.++++...|..      +......+.+ +++|++ +.+..+
T Consensus       163 ~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie~i~L~  213 (227)
T d1g8aa_         163 NAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIERLNLE  213 (227)
T ss_dssp             HHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEEEEECT
T ss_pred             HHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEEEEEcCC
Confidence            889999999999998776542      2222333333 569985 445433

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=96.70  E-value=0.0068  Score=41.66  Aligned_cols=84  Identities=13%  Similarity=0.119  Sum_probs=61.6

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchH
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLE   80 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~   80 (140)
                      .|++|+..|. +++++..+++++.+..           ...+...   .++..+.  ....+|+|+++-++..-  +-..
T Consensus        64 ~~~~v~giD~S~~ml~~A~~~~~~~~~-----------~~~~~~~---~~d~~~~--~~~~~d~i~~~~~l~~~~~~d~~  127 (225)
T d1im8a_          64 PNVKIIGIDNSQPMVERCRQHIAAYHS-----------EIPVEIL---CNDIRHV--EIKNASMVILNFTLQFLPPEDRI  127 (225)
T ss_dssp             SSCEEEEECSCHHHHHHHHHHHHTSCC-----------SSCEEEE---CSCTTTC--CCCSEEEEEEESCGGGSCGGGHH
T ss_pred             CCCceEEeCCCHHHHHHHHHHhHhhcc-----------cchhhhc---cchhhcc--ccccceeeEEeeeccccChhhHH
Confidence            5789999998 8899999999976543           2333333   2332222  24678999999888764  4566


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEec
Q 032462           81 PLLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      .+++-+.+.|+|+|.++++...+
T Consensus       128 ~~l~~i~~~LkpgG~li~~~~~~  150 (225)
T d1im8a_         128 ALLTKIYEGLNPNGVLVLSEKFR  150 (225)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEECC
T ss_pred             HHHHHHHHhCCCCceeecccccc
Confidence            88999999999999999886554

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.60  E-value=0.0014  Score=44.56  Aligned_cols=88  Identities=16%  Similarity=0.251  Sum_probs=60.4

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-ccccCCCccEEEEeecccCccc
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHL   78 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~~~~~~~~D~IlasDviY~~~~   78 (140)
                      ++.|| +|++.|. +..+..+++|++.++..           .++.+..-|..+.-. ......+||+|+ .|-=|....
T Consensus        60 ~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~-----------~~~~i~~~D~~~~l~~~~~~~~~fDlIf-lDPPY~~~~  127 (182)
T d2fhpa1          60 VSRGMDKSICIEKNFAALKVIKENIAITKEP-----------EKFEVRKMDANRALEQFYEEKLQFDLVL-LDPPYAKQE  127 (182)
T ss_dssp             HHTTCSEEEEEESCHHHHHHHHHHHHHHTCG-----------GGEEEEESCHHHHHHHHHHTTCCEEEEE-ECCCGGGCC
T ss_pred             eecchhHHHHHHHHHHHHHHHHHHhhhhhcc-----------cccccccccchhhhhhhcccCCCcceEE-echhhhhhH
Confidence            35688 8999998 88999999999988752           355555544322110 112356899776 677787777


Q ss_pred             hHHHHHHHHH--hcCCCeEEEEEEE
Q 032462           79 LEPLLQTIFA--LSGPKTTILLGYE  101 (140)
Q Consensus        79 ~~~L~~tl~~--ll~~~~~~~~~~~  101 (140)
                      ...++..|..  ++++++.+++-+.
T Consensus       128 ~~~~l~~i~~~~~L~~~giIi~E~~  152 (182)
T d2fhpa1         128 IVSQLEKMLERQLLTNEAVIVCETD  152 (182)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHCCCCCCCEEEEEEcC
Confidence            7777777754  5788888776544

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=96.55  E-value=0.0063  Score=43.08  Aligned_cols=81  Identities=10%  Similarity=-0.037  Sum_probs=60.4

Q ss_pred             CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHHH
Q 032462            5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~L   82 (140)
                      +.++++.|++++++..++++.....           ...+.+..-+=-++     ....+|+|+.+.++.+-  +....+
T Consensus       105 ~~~~~~~Dlp~~~~~a~~~~~~~~~-----------~~ri~~~~~d~~~~-----~p~~~D~v~~~~vLh~~~d~~~~~l  168 (256)
T d1qzza2         105 HLRGTLVELAGPAERARRRFADAGL-----------ADRVTVAEGDFFKP-----LPVTADVVLLSFVLLNWSDEDALTI  168 (256)
T ss_dssp             TCEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC-----CSCCEEEEEEESCGGGSCHHHHHHH
T ss_pred             CcEEEEecChHHHHHHHHHHhhcCC-----------cceeeeeeeecccc-----ccccchhhhccccccccCcHHHHHH
Confidence            5689999999999999999987653           35566666443221     23469999999999753  455677


Q ss_pred             HHHHHHhcCCCeEEEEEEE
Q 032462           83 LQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~  101 (140)
                      ++-+.+.++|+|+++|.-.
T Consensus       169 L~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         169 LRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             HHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHHhhcCCcceeEEEEe
Confidence            8888888999999988653

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=96.39  E-value=0.007  Score=40.87  Aligned_cols=43  Identities=14%  Similarity=0.197  Sum_probs=37.7

Q ss_pred             CCCccEEEEeecccCccchHHHHHHHHHhcCCCeEEEEEEEec
Q 032462           61 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  103 (140)
Q Consensus        61 ~~~~D~IlasDviY~~~~~~~L~~tl~~ll~~~~~~~~~~~~R  103 (140)
                      ...||+|+++.++..-.....+++.+.++++|+|.+++....+
T Consensus        89 ~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~  131 (208)
T d1vlma_          89 DESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR  131 (208)
T ss_dssp             TTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             cccccccccccccccccccccchhhhhhcCCCCceEEEEecCC
Confidence            5789999999999997778888999999999999999887644

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.36  E-value=0.014  Score=42.00  Aligned_cols=81  Identities=14%  Similarity=0.132  Sum_probs=60.8

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchH
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLE   80 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~   80 (140)
                      .|++|+..|. ++.+...++.++..+.           ...+.+..-|+.+.      ..+||.|+..+++..=  ...+
T Consensus        74 ~g~~v~gi~ls~~q~~~a~~~~~~~~l-----------~~~~~~~~~d~~~~------~~~fD~i~si~~~eh~~~~~~~  136 (280)
T d2fk8a1          74 FDVNVIGLTLSKNQHARCEQVLASIDT-----------NRSRQVLLQGWEDF------AEPVDRIVSIEAFEHFGHENYD  136 (280)
T ss_dssp             HCCEEEEEESCHHHHHHHHHHHHTSCC-----------SSCEEEEESCGGGC------CCCCSEEEEESCGGGTCGGGHH
T ss_pred             CceeEEEecchHHHHHHHHHHHHhhcc-----------ccchhhhhhhhhhh------ccchhhhhHhhHHHHhhhhhHH
Confidence            4889998887 7788888887766543           24555554444322      4689999999998663  4668


Q ss_pred             HHHHHHHHhcCCCeEEEEEEE
Q 032462           81 PLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      .+++.+..+|+|+|.+++-..
T Consensus       137 ~~f~~i~~~LkpgG~~~i~~i  157 (280)
T d2fk8a1         137 DFFKRCFNIMPADGRMTVQSS  157 (280)
T ss_dssp             HHHHHHHHHSCTTCEEEEEEE
T ss_pred             HHHHHHHhccCCCceEEEEEe
Confidence            899999999999999988543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=96.11  E-value=0.016  Score=41.17  Aligned_cols=93  Identities=13%  Similarity=0.131  Sum_probs=62.5

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      ++|+..|. ++.++..++|++.+..           ..++.+..-|..+..    ....||.|+. |+   ++.+ ..+.
T Consensus       111 g~V~~vD~~e~~~~~A~~n~~~~~~-----------~~nv~~~~~Di~~~~----~~~~fD~V~l-d~---p~p~-~~l~  170 (250)
T d1yb2a1         111 GTLTVVERDEDNLKKAMDNLSEFYD-----------IGNVRTSRSDIADFI----SDQMYDAVIA-DI---PDPW-NHVQ  170 (250)
T ss_dssp             SEEEEECSCHHHHHHHHHHHHTTSC-----------CTTEEEECSCTTTCC----CSCCEEEEEE-CC---SCGG-GSHH
T ss_pred             cEEEEEECCHHHHHHHHHHHHHhcC-----------CCceEEEEeeeeccc----ccceeeeeee-cC---CchH-HHHH
Confidence            58999998 8899999999988753           356777776665432    2467998874 43   3322 3566


Q ss_pred             HHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCe
Q 032462           85 TIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFN  120 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~  120 (140)
                      .+.+.++|+|.+.+..+ --. -.++..+.++ .||.
T Consensus       171 ~~~~~LKpGG~lv~~~P-~i~-Qv~~~~~~l~~~gf~  205 (250)
T d1yb2a1         171 KIASMMKPGSVATFYLP-NFD-QSEKTVLSLSASGMH  205 (250)
T ss_dssp             HHHHTEEEEEEEEEEES-SHH-HHHHHHHHSGGGTEE
T ss_pred             HHHHhcCCCceEEEEeC-CcC-hHHHHHHHHHHCCCc
Confidence            67788899998755433 212 2456777774 5885

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.10  E-value=0.01  Score=40.55  Aligned_cols=98  Identities=15%  Similarity=0.172  Sum_probs=56.1

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      ++.|+ +|+..|. +..+..+++|++.|..             ...+...|.   .   ....+||+|+ +|.=|.....
T Consensus        65 ~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~-------------~~~~~~~d~---~---~~~~~fD~Vi-~nPP~~~~~~  124 (201)
T d1wy7a1          65 LLLGAKEVICVEVDKEAVDVLIENLGEFKG-------------KFKVFIGDV---S---EFNSRVDIVI-MNPPFGSQRK  124 (201)
T ss_dssp             HHTTCSEEEEEESCHHHHHHHHHHTGGGTT-------------SEEEEESCG---G---GCCCCCSEEE-ECCCCSSSST
T ss_pred             HHcCCCEEEEEcCcHHHHHHHHHHHHHcCC-------------CceEEECch---h---hhCCcCcEEE-EcCccccccc
Confidence            45787 8999998 7899999999877653             223332222   1   1256899987 4777754321


Q ss_pred             ---HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH--HhcCeEEee
Q 032462           80 ---EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW--KSNFNVKLV  124 (140)
Q Consensus        80 ---~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~--~~~f~v~~v  124 (140)
                         .+++..   .+.....++..+... .. ...|++..  +.|+.++..
T Consensus       125 ~~d~~~l~~---~~~~~~~v~~ih~~~-~~-~~~~i~~~~~~~g~~i~~~  169 (201)
T d1wy7a1         125 HADRPFLLK---AFEISDVVYSIHLAK-PE-VRRFIEKFSWEHGFVVTHR  169 (201)
T ss_dssp             TTTHHHHHH---HHHHCSEEEEEEECC-HH-HHHHHHHHHHHTTEEEEEE
T ss_pred             cccHHHHHH---HHhhcccchhcccch-HH-HHHHHHHHHhhcCceEEEE
Confidence               233322   222344555544322 22 34566654  346766543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.03  E-value=0.095  Score=37.54  Aligned_cols=81  Identities=15%  Similarity=0.136  Sum_probs=61.2

Q ss_pred             CCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchH
Q 032462            4 LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLE   80 (140)
Q Consensus         4 lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~   80 (140)
                      .|++|+.-+. ++-+...++.++..+.           ..++.+..-||.+.      ..+||-|++-..+=.-  ...+
T Consensus        84 ~g~~v~git~s~~Q~~~a~~~~~~~g~-----------~~~v~~~~~d~~~~------~~~fD~i~si~~~eh~~~~~~~  146 (285)
T d1kpga_          84 YDVNVVGLTLSKNQANHVQQLVANSEN-----------LRSKRVLLAGWEQF------DEPVDRIVSIGAFEHFGHERYD  146 (285)
T ss_dssp             HCCEEEEEESCHHHHHHHHHHHHTCCC-----------CSCEEEEESCGGGC------CCCCSEEEEESCGGGTCTTTHH
T ss_pred             CCcceEEEeccHHHHHHHHHHHHhhhh-----------hhhhHHHHhhhhcc------cccccceeeehhhhhcCchhHH
Confidence            5888887776 7778888888776543           36788887777543      3589999998887442  3457


Q ss_pred             HHHHHHHHhcCCCeEEEEEEE
Q 032462           81 PLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      .+++.+.++|+|+|.+++-.-
T Consensus       147 ~~~~~~~r~LkpgG~~~l~~i  167 (285)
T d1kpga_         147 AFFSLAHRLLPADGVMLLHTI  167 (285)
T ss_dssp             HHHHHHHHHSCTTCEEEEEEE
T ss_pred             HHHHHHHhhcCCCCcEEEEEE
Confidence            899999999999999886443

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0015  Score=45.52  Aligned_cols=83  Identities=14%  Similarity=0.099  Sum_probs=52.8

Q ss_pred             ccCC-CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecc------
Q 032462            2 ALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV------   73 (140)
Q Consensus         2 A~lG-a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDvi------   73 (140)
                      |+.+ ++|+..|. +.+++.++++.....             ..+....-+|..... +....+||.|+- |.+      
T Consensus        72 a~~~~~~v~~id~s~~~~~~a~~~~~~~~-------------~~~~~~~~~~~~~~~-~~~~~~fD~i~f-D~~~~~~~~  136 (229)
T d1zx0a1          72 QEAPIDEHWIIECNDGVFQRLRDWAPRQT-------------HKVIPLKGLWEDVAP-TLPDGHFDGILY-DTYPLSEET  136 (229)
T ss_dssp             HTSCEEEEEEEECCHHHHHHHHHHGGGCS-------------SEEEEEESCHHHHGG-GSCTTCEEEEEE-CCCCCBGGG
T ss_pred             HHcCCCeEEEeCCCHHHHHHHHHHhhhcc-------------ccccccccccccccc-ccccccccceee-ccccccccc
Confidence            4444 58999998 889999988764432             345555555543321 122568998873 332      


Q ss_pred             cCccchHHHHHHHHHhcCCCeEEEEE
Q 032462           74 YAEHLLEPLLQTIFALSGPKTTILLG   99 (140)
Q Consensus        74 Y~~~~~~~L~~tl~~ll~~~~~~~~~   99 (140)
                      ..-...+.+++.+.++|+|+|.+.+.
T Consensus       137 ~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         137 WHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             TTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            22223455777788899999988664

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.018  Score=40.75  Aligned_cols=60  Identities=18%  Similarity=0.161  Sum_probs=44.0

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccc---cccCCCccEEEEeecccC
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI---KAVAPPFDYIIGTDVVYA   75 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~---~~~~~~~D~IlasDviY~   75 (140)
                      +++|+.+|. ++.+...++|++.|..           ..++.+..-+|......   .....+||+|++-=-.|.
T Consensus        85 ~~~~~~~Di~~~al~~A~~N~~~n~l-----------~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~  148 (250)
T d2h00a1          85 GWYFLATEVDDMCFNYAKKNVEQNNL-----------SDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFA  148 (250)
T ss_dssp             CCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-
T ss_pred             CccccceecCHHHHHHHHHHHHHhCC-----------CcceeeeeeccHHhhhhhhhhcccCceeEEEecCcccc
Confidence            679999998 8899999999999975           36778877777654311   122467999987555553

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.65  E-value=0.17  Score=36.22  Aligned_cols=82  Identities=15%  Similarity=0.128  Sum_probs=58.0

Q ss_pred             cCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC-c----
Q 032462            3 LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-E----   76 (140)
Q Consensus         3 ~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~-~----   76 (140)
                      +.|++|+--+. ++-+...++.+...+.           ...+.+...|+..      ...+||.|+.-..+=. .    
T Consensus        82 ~~g~~v~git~s~~q~~~a~~~~~~~~l-----------~~~v~~~~~d~~~------~~~~fD~i~sie~~eH~~~~~~  144 (291)
T d1kpia_          82 EYDVNVIGLTLSENQYAHDKAMFDEVDS-----------PRRKEVRIQGWEE------FDEPVDRIVSLGAFEHFADGAG  144 (291)
T ss_dssp             HHCCEEEEEESCHHHHHHHHHHHHHSCC-----------SSCEEEEECCGGG------CCCCCSEEEEESCGGGTTCCSS
T ss_pred             hcCcceeeccchHHHHHHHHHHHHhhcc-----------chhhhhhhhcccc------cccccceEeechhHHhcchhhh
Confidence            35888888887 6667777776665443           2456665555421      2468999999887743 2    


Q ss_pred             ----cchHHHHHHHHHhcCCCeEEEEEEE
Q 032462           77 ----HLLEPLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        77 ----~~~~~L~~tl~~ll~~~~~~~~~~~  101 (140)
                          ...+.+++.+.++|+|+|++++-.-
T Consensus       145 ~~~~~~~~~~f~~i~~~LkpgG~~~l~~i  173 (291)
T d1kpia_         145 DAGFERYDTFFKKFYNLTPDDGRMLLHTI  173 (291)
T ss_dssp             CCSTTHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence                3468999999999999999987543

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=94.98  E-value=0.064  Score=39.03  Aligned_cols=104  Identities=14%  Similarity=0.119  Sum_probs=63.7

Q ss_pred             CEEEEecc-hhHHHHHHHHHHH-hhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeec---ccCcc---
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV---VYAEH---   77 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~-N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDv---iY~~~---   77 (140)
                      .+|++-|. +++++..++.+.. |....        ..+++++..=|+-+-  ......+||+|| .|+   .....   
T Consensus       102 ~~v~~VEiD~~Vi~~a~~~f~~~~~~~~--------~d~rv~i~~~Da~~~--l~~~~~~yDvIi-~D~~dp~~~~~~~~  170 (312)
T d1uira_         102 EKAVMVDIDGELVEVAKRHMPEWHQGAF--------DDPRAVLVIDDARAY--LERTEERYDVVI-IDLTDPVGEDNPAR  170 (312)
T ss_dssp             CEEEEEESCHHHHHHHHHHCHHHHTTGG--------GCTTEEEEESCHHHH--HHHCCCCEEEEE-EECCCCBSTTCGGG
T ss_pred             ceEEEecCCHHHHHHHHhcCcccccCcc--------CCCceEEEEchHHHH--hhhcCCcccEEE-EeCCCcccccchhh
Confidence            48999998 8899999988743 33222        246677665555433  223467899999 555   33221   


Q ss_pred             --chHHHHHHHHHhcCCCeEEEEEE--E-ecChhHHHHHHHHHHhcCe
Q 032462           78 --LLEPLLQTIFALSGPKTTILLGY--E-IRSTSVHEQMLQMWKSNFN  120 (140)
Q Consensus        78 --~~~~L~~tl~~ll~~~~~~~~~~--~-~R~~~~~~~F~~~~~~~f~  120 (140)
                        .-..+.+.+++.|+|+|.+.+-.  . .+..+......+.+++.|.
T Consensus       171 ~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~  218 (312)
T d1uira_         171 LLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFR  218 (312)
T ss_dssp             GGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCS
T ss_pred             hhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCc
Confidence              12568889999999999876522  2 2222333444455666675

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.50  E-value=0.034  Score=37.98  Aligned_cols=24  Identities=33%  Similarity=0.400  Sum_probs=19.9

Q ss_pred             ccCCC-EEEEecc-hhHHHHHHHHHH
Q 032462            2 ALLGC-NVITTDQ-IEVLPLLKRNVE   25 (140)
Q Consensus         2 A~lGa-~Vv~TD~-~~vl~~l~~Ni~   25 (140)
                      +++|+ +|+..|. ++.++.+++|+.
T Consensus        67 ~~~ga~~V~~vDid~~a~~~ar~N~~   92 (197)
T d1ne2a_          67 YLLGAESVTAFDIDPDAIETAKRNCG   92 (197)
T ss_dssp             HHTTBSEEEEEESCHHHHHHHHHHCT
T ss_pred             HHcCCCcccccccCHHHHHHHHHccc
Confidence            46787 7999998 788999998863

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.07  E-value=0.066  Score=36.58  Aligned_cols=73  Identities=22%  Similarity=0.167  Sum_probs=48.2

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      .+|+..|. ++.+...++|++.+..            .++...   +++.........+||+|+.+-.+..  ..+    
T Consensus       101 g~V~~id~~~~~~~~a~~~~~~~~~------------~n~~~~---~~d~~~~~~~~~~fD~I~~~~~~~~--~p~----  159 (213)
T d1dl5a1         101 GLVVSVEYSRKICEIAKRNVERLGI------------ENVIFV---CGDGYYGVPEFSPYDVIFVTVGVDE--VPE----  159 (213)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEE---ESCGGGCCGGGCCEEEEEECSBBSC--CCH----
T ss_pred             CcEEEeecchhhHHHhhhhHhhhcc------------cccccc---cCchHHccccccchhhhhhhccHHH--hHH----
Confidence            48999997 8899999999988654            233332   3443322223568999998766543  223    


Q ss_pred             HHHHhcCCCeEEEEE
Q 032462           85 TIFALSGPKTTILLG   99 (140)
Q Consensus        85 tl~~ll~~~~~~~~~   99 (140)
                      .+.+.++|+|++++.
T Consensus       160 ~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         160 TWFTQLKEGGRVIVP  174 (213)
T ss_dssp             HHHHHEEEEEEEEEE
T ss_pred             HHHHhcCCCcEEEEE
Confidence            344557899988764

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=94.02  E-value=0.015  Score=40.64  Aligned_cols=76  Identities=12%  Similarity=0.156  Sum_probs=47.0

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      ||+++++|+..|. ++.+...++|+..+              .++.+..   ++.........+||.|+.+-.+  +...
T Consensus        88 La~l~~~V~aiE~~~~~~~~A~~~~~~~--------------~nv~~~~---~d~~~g~~~~~pfD~Iiv~~a~--~~ip  148 (224)
T d1vbfa_          88 IAEIVDKVVSVEINEKMYNYASKLLSYY--------------NNIKLIL---GDGTLGYEEEKPYDRVVVWATA--PTLL  148 (224)
T ss_dssp             HHHHSSEEEEEESCHHHHHHHHHHHTTC--------------SSEEEEE---SCGGGCCGGGCCEEEEEESSBB--SSCC
T ss_pred             HHHHhcccccccccHHHHHHHHHHHhcc--------------ccccccc---CchhhcchhhhhHHHHHhhcch--hhhh
Confidence            4678889999997 77888888775432              3444443   2221111124689999876543  2233


Q ss_pred             HHHHHHHHHhcCCCeEEEEE
Q 032462           80 EPLLQTIFALSGPKTTILLG   99 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~   99 (140)
                          ..+...|+|+|++++-
T Consensus       149 ----~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         149 ----CKPYEQLKEGGIMILP  164 (224)
T ss_dssp             ----HHHHHTEEEEEEEEEE
T ss_pred             ----HHHHHhcCCCCEEEEE
Confidence                3444567898988764

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=93.93  E-value=0.41  Score=34.60  Aligned_cols=104  Identities=11%  Similarity=0.143  Sum_probs=63.4

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCc-cccccCCCccEEEEeecccCcc-
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAVAPPFDYIIGTDVVYAEH-   77 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~-~~~~~~~~~D~IlasDviY~~~-   77 (140)
                      ||+.+++|+..|. ++.+...++|++.|+.            .+++...-+=.+.. ........+|+||     -+|. 
T Consensus       230 La~~~~~V~gvE~~~~ai~~A~~na~~n~i------------~n~~~~~~~~~~~~~~~~~~~~~~d~vi-----lDPPR  292 (358)
T d1uwva2         230 LATQAASVVGVEGVPALVEKGQQNARLNGL------------QNVTFYHENLEEDVTKQPWAKNGFDKVL-----LDPAR  292 (358)
T ss_dssp             HHTTSSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEECCTTSCCSSSGGGTTCCSEEE-----ECCCT
T ss_pred             ccccccEEEeccCcHHHHHHHHHhHHhccc------------ccceeeecchhhhhhhhhhhhccCceEE-----eCCCC
Confidence            4667789999998 8899999999999986            34444332211110 1112246788764     3442 


Q ss_pred             -chHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-HhcCeEEeec
Q 032462           78 -LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVP  125 (140)
Q Consensus        78 -~~~~L~~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~-~~~f~v~~v~  125 (140)
                       -....+..|..+ +|...+||+.-   +.+..+=+..+ +.||.++.+-
T Consensus       293 ~G~~~~~~~l~~~-~~~~ivYVSCn---p~TlaRDl~~l~~~gy~l~~i~  338 (358)
T d1uwva2         293 AGAAGVMQQIIKL-EPIRIVYVSCN---PATLARDSEALLKAGYTIARLA  338 (358)
T ss_dssp             TCCHHHHHHHHHH-CCSEEEEEESC---HHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccHHHHHHHHHHc-CCCEEEEEeCC---HHHHHHHHHHHHHCCCeEeEEE
Confidence             123355555443 68889999875   43433323344 6799988763

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=93.21  E-value=0.32  Score=34.30  Aligned_cols=98  Identities=11%  Similarity=-0.039  Sum_probs=61.7

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      +++|+..|. ++.++..++|++.++..           .++.+   ..++... ......+|.|+. |+    ......+
T Consensus       128 ~G~V~~vD~~~~~~~~A~~~~~~~g~~-----------~~v~~---~~~d~~~-~~~~~~~D~V~~-d~----p~p~~~l  187 (266)
T d1o54a_         128 SGKVFAYEKREEFAKLAESNLTKWGLI-----------ERVTI---KVRDISE-GFDEKDVDALFL-DV----PDPWNYI  187 (266)
T ss_dssp             TCEEEEECCCHHHHHHHHHHHHHTTCG-----------GGEEE---ECCCGGG-CCSCCSEEEEEE-CC----SCGGGTH
T ss_pred             CcEEEEEeCCHHHHHHHHHHHHHhccc-----------cCcEE---Eeccccc-cccccceeeeEe-cC----CCHHHHH
Confidence            359999997 88999999999987542           33333   3443321 122456777653 32    2234456


Q ss_pred             HHHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-hcCeEEee
Q 032462           84 QTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV  124 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~~f~v~~v  124 (140)
                      .-+..+|+|+|.+.+..+.  .+..++..+.++ .+|...++
T Consensus       188 ~~~~~~LKpGG~lv~~~P~--~~Qv~~~~~~l~~~gF~~i~~  227 (266)
T d1o54a_         188 DKCWEALKGGGRFATVCPT--TNQVQETLKKLQELPFIRIEV  227 (266)
T ss_dssp             HHHHHHEEEEEEEEEEESS--HHHHHHHHHHHHHSSEEEEEE
T ss_pred             HHHHhhcCCCCEEEEEeCc--ccHHHHHHHHHHHCCceeEEE
Confidence            7777888999988654442  223567788885 58864443

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.13  E-value=0.023  Score=39.45  Aligned_cols=80  Identities=20%  Similarity=0.187  Sum_probs=49.7

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      +.+|+..|. +++++..++|++.+.....       ...++.+..   |+.........+||+|+..-.+..  ..+   
T Consensus       101 ~g~V~~ie~~~~l~~~a~~~l~~~~~~~~-------~~~~~~~~~---gD~~~~~~~~~~fD~I~~~~~~~~--ip~---  165 (224)
T d1i1na_         101 TGKVIGIDHIKELVDDSVNNVRKDDPTLL-------SSGRVQLVV---GDGRMGYAEEAPYDAIHVGAAAPV--VPQ---  165 (224)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHHHHCTHHH-------HTSSEEEEE---SCGGGCCGGGCCEEEEEECSBBSS--CCH---
T ss_pred             CceEEEEcCCHHHHHHHHHhccccCcccc-------cccceEEEE---eecccccchhhhhhhhhhhcchhh--cCH---
Confidence            348999997 8899999999987654211       113344332   333222223568999988765543  223   


Q ss_pred             HHHHHhcCCCeEEEEEE
Q 032462           84 QTIFALSGPKTTILLGY  100 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~  100 (140)
                       .+...|+|+|++++..
T Consensus       166 -~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         166 -ALIDQLKPGGRLILPV  181 (224)
T ss_dssp             -HHHHTEEEEEEEEEEE
T ss_pred             -HHHhhcCCCcEEEEEE
Confidence             3455678999887643

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=0.37  Score=34.36  Aligned_cols=105  Identities=17%  Similarity=0.049  Sum_probs=63.8

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccc------
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL------   78 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~------   78 (140)
                      .+|++-|. ++|++..++-...|....        ..+++++..=|.-+-  ......+||+||. |+ +++..      
T Consensus       103 ~~v~~vEiD~~Vv~~a~~~~~~~~~~~--------~d~rv~i~~~Da~~~--l~~~~~~yDvIi~-D~-~~p~~~~~~L~  170 (285)
T d2o07a1         103 ESVVQCEIDEDVIQVSKKFLPGMAIGY--------SSSKLTLHVGDGFEF--MKQNQDAFDVIIT-DS-SDPMGPAESLF  170 (285)
T ss_dssp             CEEEEEESCHHHHHHHHHHCHHHHGGG--------GCTTEEEEESCHHHH--HHTCSSCEEEEEE-EC-C----------
T ss_pred             ceeeeccCCHHHHHHHHhhchhhcccc--------CCCCceEEEccHHHH--HhcCCCCCCEEEE-cC-CCCCCcccccc
Confidence            38999998 889999998777665433        235666665443221  1223568999996 65 44432      


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEec--ChhHHHHHHHHHHhcCeEE
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFNVK  122 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~R--~~~~~~~F~~~~~~~f~v~  122 (140)
                      -..+.+.+++.|+|+|.+.+-...-  .........+.+++.|...
T Consensus       171 t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~F~~v  216 (285)
T d2o07a1         171 KESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVV  216 (285)
T ss_dssp             -CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEE
T ss_pred             cHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhcCCee
Confidence            2345777888899999886644332  2333445555566667644

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.05  E-value=0.36  Score=34.66  Aligned_cols=107  Identities=12%  Similarity=0.055  Sum_probs=66.5

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccC---c--c-c
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA---E--H-L   78 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~---~--~-~   78 (140)
                      .+|++-|. +++++..++-...|....        ..+++++..=|.-+-  ......+||+||. |+.-.   +  . .
T Consensus       114 ~~i~~VEIDp~Vi~~a~~~~~~~~~~~--------~d~rv~v~~~Da~~~--l~~~~~~yDvIi~-D~~dp~~~~~~~L~  182 (295)
T d1inla_         114 EKAILCEVDGLVIEAARKYLKQTSCGF--------DDPRAEIVIANGAEY--VRKFKNEFDVIII-DSTDPTAGQGGHLF  182 (295)
T ss_dssp             SEEEEEESCHHHHHHHHHHCHHHHGGG--------GCTTEEEEESCHHHH--GGGCSSCEEEEEE-EC----------CC
T ss_pred             ceEEEecCCHHHHHHHHHHHHhhcccc--------cCCCcEEEhhhHHHH--HhcCCCCCCEEEE-cCCCCCcCchhhhc
Confidence            48999999 889999999887766443        235666665444322  2234678999994 54321   1  1 2


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEEe--cChhHHHHHHHHHHhcCeEEe
Q 032462           79 LEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFNVKL  123 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~~--R~~~~~~~F~~~~~~~f~v~~  123 (140)
                      -..+.+.+++.|+|+|.+.+-...  ...+......+.+++-|....
T Consensus       183 t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~  229 (295)
T d1inla_         183 TEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITR  229 (295)
T ss_dssp             SHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEE
T ss_pred             cHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcceeE
Confidence            467888999999999987553322  233344555666666675443

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=91.92  E-value=0.24  Score=35.20  Aligned_cols=107  Identities=10%  Similarity=-0.004  Sum_probs=67.5

Q ss_pred             CCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc----
Q 032462            4 LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH----   77 (140)
Q Consensus         4 lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~----   77 (140)
                      .+. +|++-|. ++|++..++-...|....        ..+++++..=|.-.-  ......+||+||. |+ +++.    
T Consensus        97 ~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~--------~d~r~~i~~~D~~~~--l~~~~~~yDvIi~-D~-~~p~~~~~  164 (274)
T d1iy9a_          97 PSVKKATLVDIDGKVIEYSKKFLPSIAGKL--------DDPRVDVQVDDGFMH--IAKSENQYDVIMV-DS-TEPVGPAV  164 (274)
T ss_dssp             TTCSEEEEEESCHHHHHHHHHHCHHHHTTT--------TSTTEEEEESCSHHH--HHTCCSCEEEEEE-SC-SSCCSCCC
T ss_pred             CCcceEEEecCCHHHHHHHHHhChhhcccc--------cCCCeEEEechHHHH--HhhcCCCCCEEEE-cC-CCCCCcch
Confidence            344 8999999 889999998877765432        245666655433221  1234578999984 32 3321    


Q ss_pred             --chHHHHHHHHHhcCCCeEEEEEEE--ecChhHHHHHHHHHHhcCeEE
Q 032462           78 --LLEPLLQTIFALSGPKTTILLGYE--IRSTSVHEQMLQMWKSNFNVK  122 (140)
Q Consensus        78 --~~~~L~~tl~~ll~~~~~~~~~~~--~R~~~~~~~F~~~~~~~f~v~  122 (140)
                        .-..+.+.+++.|+|+|.+..-..  ....+......+.+++-|...
T Consensus       165 ~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v  213 (274)
T d1iy9a_         165 NLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPIT  213 (274)
T ss_dssp             CCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEE
T ss_pred             hhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCce
Confidence              245678888999999998765322  233444556666677777643

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.87  E-value=0.079  Score=36.46  Aligned_cols=77  Identities=21%  Similarity=0.253  Sum_probs=50.1

Q ss_pred             ccC-CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccch
Q 032462            2 ALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         2 A~l-Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~   79 (140)
                      |++ |.+|+.-|. ++++...++|++..+.            .++.+..=|-.+.   .....+||.|+..-.+.  +..
T Consensus        97 a~l~g~~V~~ie~~~~l~~~a~~~l~~~g~------------~nv~~~~gd~~~g---~~~~~pfD~Iiv~~a~~--~ip  159 (215)
T d1jg1a_          97 SEIVKTDVYTIERIPELVEFAKRNLERAGV------------KNVHVILGDGSKG---FPPKAPYDVIIVTAGAP--KIP  159 (215)
T ss_dssp             HHHHCSCEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEESCGGGC---CGGGCCEEEEEECSBBS--SCC
T ss_pred             HHhhCceeEEEeccHHHHHHHHHHHHHcCC------------ceeEEEECccccC---CcccCcceeEEeecccc--cCC
Confidence            443 778998887 8899999999998753            4556554333221   12357899998876664  333


Q ss_pred             HHHHHHHHHhcCCCeEEEEE
Q 032462           80 EPLLQTIFALSGPKTTILLG   99 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~   99 (140)
                      +.|+    ..++++|++++.
T Consensus       160 ~~l~----~qL~~gGrLv~p  175 (215)
T d1jg1a_         160 EPLI----EQLKIGGKLIIP  175 (215)
T ss_dssp             HHHH----HTEEEEEEEEEE
T ss_pred             HHHH----HhcCCCCEEEEE
Confidence            4443    346788877653

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.51  E-value=0.87  Score=31.98  Aligned_cols=96  Identities=13%  Similarity=0.075  Sum_probs=58.8

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHHH
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQ   84 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~~   84 (140)
                      .+|+.-|. ++.++..++|++.-...         ...++....-|   ....+.....||.|+. |+   ++.+ ..+.
T Consensus       122 G~V~~~d~~~~~~~~Ar~n~~~~~~~---------~~~nv~~~~~d---~~~~~~~~~~fDaV~l-dl---p~P~-~~l~  184 (264)
T d1i9ga_         122 GQVISYEQRADHAEHARRNVSGCYGQ---------PPDNWRLVVSD---LADSELPDGSVDRAVL-DM---LAPW-EVLD  184 (264)
T ss_dssp             SEEEEECSCHHHHHHHHHHHHHHHTS---------CCTTEEEECSC---GGGCCCCTTCEEEEEE-ES---SCGG-GGHH
T ss_pred             cEEEEecCCHHHHHHHHHhhhhhccC---------CCceEEEEecc---cccccccCCCcceEEE-ec---CCHH-HHHH
Confidence            48999997 88999999999874321         12445544322   2222223578998874 53   3333 3355


Q ss_pred             HHHHhcCCCeEEEEEEEecChhHHHHHHHHHH-h-cCe
Q 032462           85 TIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-S-NFN  120 (140)
Q Consensus        85 tl~~ll~~~~~~~~~~~~R~~~~~~~F~~~~~-~-~f~  120 (140)
                      .+.+.++|+|.+.+-.+.-.+  ..+..+.++ + +|.
T Consensus       185 ~~~~~LkpGG~lv~~~P~i~Q--v~~~~~~l~~~~~f~  220 (264)
T d1i9ga_         185 AVSRLLVAGGVLMVYVATVTQ--LSRIVEALRAKQCWT  220 (264)
T ss_dssp             HHHHHEEEEEEEEEEESSHHH--HHHHHHHHHHHSSBC
T ss_pred             HHHhccCCCCEEEEEeCccCh--HHHHHHHHHHcCCee
Confidence            677788899987554443322  467777774 4 564

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.72  E-value=0.19  Score=37.37  Aligned_cols=92  Identities=16%  Similarity=0.046  Sum_probs=55.8

Q ss_pred             CCC-EEEEecc-hhHHHHHHHHHHHhhcccccCCC---CCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccc
Q 032462            4 LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNP---GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL   78 (140)
Q Consensus         4 lGa-~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~---~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~   78 (140)
                      .|+ +|++-|. ++.++.+++|+++|+........   .......+.+...|+...  .......||+|. -|. |.  .
T Consensus        67 ~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~--~~~~~~~fDvID-iDP-fG--s  140 (375)
T d2dula1          67 TPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL--MAERHRYFHFID-LDP-FG--S  140 (375)
T ss_dssp             SSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH--HHHSTTCEEEEE-ECC-SS--C
T ss_pred             CCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhh--hHhhcCcCCccc-CCC-CC--C
Confidence            466 8999998 88999999999999753211000   001123455555555322  112356799654 344 32  3


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEE
Q 032462           79 LEPLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      ..|+++.--+..+.+|.+.+..+
T Consensus       141 ~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         141 PMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             CHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cHHHHHHHHHHhccCCEEEEEec
Confidence            45677766666677777777766

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.24  E-value=0.72  Score=31.39  Aligned_cols=109  Identities=11%  Similarity=0.037  Sum_probs=70.1

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-c--cccCCCccEEEEeecccCccchH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I--KAVAPPFDYIIGTDVVYAEHLLE   80 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~--~~~~~~~D~IlasDviY~~~~~~   80 (140)
                      +++|+..|. ++.....++|++..+.           ...++...-+-.+... .  .....+||+|.. |.  +++...
T Consensus        84 ~g~i~tie~~~~~~~~A~~~~~~ag~-----------~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ifi-D~--dk~~y~  149 (219)
T d2avda1          84 DGRVVTCEVDAQPPELGRPLWRQAEA-----------EHKIDLRLKPALETLDELLAAGEAGTFDVAVV-DA--DKENCS  149 (219)
T ss_dssp             TCEEEEEESCSHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHHHHHTTCTTCEEEEEE-CS--CSTTHH
T ss_pred             CceEEEEeechhHHHHHHHHHHhcCc-----------cceEEEEEeehhhcchhhhhhcccCCccEEEE-eC--CHHHHH
Confidence            569999998 7788999999998765           2455554333222110 0  012568998877 43  345556


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEecC----------h--hHHHHHHHHHHh--cCeEEeecCC
Q 032462           81 PLLQTIFALSGPKTTILLGYEIRS----------T--SVHEQMLQMWKS--NFNVKLVPKA  127 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~R~----------~--~~~~~F~~~~~~--~f~v~~v~~~  127 (140)
                      ..+..+..+++|+|.+++-.....          .  .....|.+.++.  .|....+|..
T Consensus       150 ~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llPig  210 (219)
T d2avda1         150 AYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLG  210 (219)
T ss_dssp             HHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECST
T ss_pred             HHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEeecC
Confidence            666777788999999987555432          1  125678887743  6777777753

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=89.40  E-value=1.2  Score=30.60  Aligned_cols=74  Identities=19%  Similarity=0.052  Sum_probs=53.5

Q ss_pred             CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHHH
Q 032462            5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~L   82 (140)
                      +.++|+-|+|++++       ..           ....+++..+-|.-++      .+..|+++.+-|+++-  +-...+
T Consensus       105 ~l~~~v~Dlp~vi~-------~~-----------~~~~ri~~~~gd~~~~------~p~~D~~~l~~vLh~~~de~~~~i  160 (244)
T d1fp1d2         105 LIKGINFDLPQVIE-------NA-----------PPLSGIEHVGGDMFAS------VPQGDAMILKAVCHNWSDEKCIEF  160 (244)
T ss_dssp             TCEEEEEECHHHHT-------TC-----------CCCTTEEEEECCTTTC------CCCEEEEEEESSGGGSCHHHHHHH
T ss_pred             CCeEEEecchhhhh-------cc-----------CCCCCeEEecCCcccc------cccceEEEEehhhhhCCHHHHHHH
Confidence            45888889887742       11           1246788888877543      2356999999999874  355677


Q ss_pred             HHHHHHhcCCCeEEEEEEEe
Q 032462           83 LQTIFALSGPKTTILLGYEI  102 (140)
Q Consensus        83 ~~tl~~ll~~~~~~~~~~~~  102 (140)
                      ++-+...++|+|+++|+-..
T Consensus       161 L~~~~~aL~pgg~llI~e~v  180 (244)
T d1fp1d2         161 LSNCHKALSPNGKVIIVEFI  180 (244)
T ss_dssp             HHHHHHHEEEEEEEEEEEEE
T ss_pred             HHHHHHHcCCCcEEEEEEEE
Confidence            88888888999999887754

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=88.81  E-value=0.1  Score=36.85  Aligned_cols=85  Identities=16%  Similarity=0.205  Sum_probs=50.9

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccc-cccCCCccEEEEeecccCcc-
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-KAVAPPFDYIIGTDVVYAEH-   77 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~-~~~~~~~D~IlasDviY~~~-   77 (140)
                      ||.+|++|++.+. +.+..++++|++.......      .......-..+-+|+..+. ......||+|.. |-+|.+. 
T Consensus       106 lA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~------~~~~~~~ri~li~~Ds~~~L~~~~~~~DvIYl-DPMFp~~~  178 (250)
T d2oyra1         106 LASVGCRVRMLERNPVVAALLDDGLARGYADAE------IGGWLQERLQLIHASSLTALTDITPRPQVVYL-DPMFPHKQ  178 (250)
T ss_dssp             HHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTT------THHHHHHHEEEEESCHHHHSTTCSSCCSEEEE-CCCCCCCC
T ss_pred             HHhCCCEEEEEccCHHHHHHHHHHHHHHHhCch------hHHHHhhhheeecCcHHHHHhccCCCCCEEEE-CCCCcccc
Confidence            4778999999998 7777899999987654210      0000122334455554321 223467998885 9999754 


Q ss_pred             ---chHHHHHHHHHhcCC
Q 032462           78 ---LLEPLLQTIFALSGP   92 (140)
Q Consensus        78 ---~~~~L~~tl~~ll~~   92 (140)
                         ....=++.++.+.+.
T Consensus       179 Ksa~~kk~m~~l~~l~~~  196 (250)
T d2oyra1         179 KSALVKKEMRVFQSLVGP  196 (250)
T ss_dssp             C-----HHHHHHHHHSCC
T ss_pred             ccccchhHHHHHHhhccC
Confidence               334446666666653

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=88.76  E-value=0.54  Score=32.28  Aligned_cols=109  Identities=10%  Similarity=0.020  Sum_probs=70.9

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcc-c---cccCCCccEEEEeecccCccch
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I---KAVAPPFDYIIGTDVVYAEHLL   79 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~-~---~~~~~~~D~IlasDviY~~~~~   79 (140)
                      +++|+..|. ++.....++|++..+.           ...+++..=+..+.-+ .   .....+||+|.. |.  ++...
T Consensus        84 ~g~v~tie~~~~~~~~A~~~~~~~g~-----------~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~iFi-Da--~k~~y  149 (227)
T d1susa1          84 DGKILAMDINKENYELGLPVIKKAGV-----------DHKIDFREGPALPVLDEMIKDEKNHGSYDFIFV-DA--DKDNY  149 (227)
T ss_dssp             TCEEEEEESCCHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHHHHCGGGTTCBSEEEE-CS--CSTTH
T ss_pred             CcEEEEEeccchhHHHHHHHHHHhcc-----------ccceeeeehHHHHHHHHHHhccccCCceeEEEe-cc--chhhh
Confidence            569999998 7888999999998765           2466666655543211 0   012468999887 64  45666


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEEecC------------h------hHHHHHHHHHH--hcCeEEeecCC
Q 032462           80 EPLLQTIFALSGPKTTILLGYEIRS------------T------SVHEQMLQMWK--SNFNVKLVPKA  127 (140)
Q Consensus        80 ~~L~~tl~~ll~~~~~~~~~~~~R~------------~------~~~~~F~~~~~--~~f~v~~v~~~  127 (140)
                      ..-+..+..+++|+|.+++=.....            .      +....|.+.++  ..|....+|..
T Consensus       150 ~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~~~llPig  217 (227)
T d1susa1         150 LNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVG  217 (227)
T ss_dssp             HHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBCCEEECST
T ss_pred             HHHHHHHHhhcCCCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCEEEEEeecC
Confidence            7777777889999999877433211            0      12445666653  46777777754

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=86.86  E-value=2.9  Score=27.81  Aligned_cols=81  Identities=11%  Similarity=0.048  Sum_probs=52.2

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCcccc--ccCCCccEEEEeecccCc--cc-
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK--AVAPPFDYIIGTDVVYAE--HL-   78 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~--~~~~~~D~IlasDviY~~--~~-   78 (140)
                      +++++..|. +..+..+..++..++.            .++.+..-|   .....  .....+|.|..-=..-.+  .. 
T Consensus        53 ~~~~iGiD~~~~~i~~a~~~~~~~~l------------~Nv~~~~~D---a~~l~~~~~~~~~d~v~i~fp~P~~k~~h~  117 (204)
T d2fcaa1          53 DINYIGIELFKSVIVTAVQKVKDSEA------------QNVKLLNID---ADTLTDVFEPGEVKRVYLNFSDPWPKKRHE  117 (204)
T ss_dssp             TSEEEEECSCHHHHHHHHHHHHHSCC------------SSEEEECCC---GGGHHHHCCTTSCCEEEEESCCCCCSGGGG
T ss_pred             CCcEEEeecchHHHHHHHHHHHHHhc------------cCchhcccc---hhhhhcccCchhhhccccccccccchhhhc
Confidence            468999997 7888888888887653            355554433   11111  124567765533222222  11 


Q ss_pred             -----hHHHHHHHHHhcCCCeEEEEEE
Q 032462           79 -----LEPLLQTIFALSGPKTTILLGY  100 (140)
Q Consensus        79 -----~~~L~~tl~~ll~~~~~~~~~~  100 (140)
                           .+.++..+.+.|+|+|.++++.
T Consensus       118 k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         118 KRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             GGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             chhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence                 2689999999999999998875

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=86.16  E-value=2.3  Score=29.09  Aligned_cols=73  Identities=12%  Similarity=-0.028  Sum_probs=50.0

Q ss_pred             CCEEEEecchhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCc--cchHHH
Q 032462            5 GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPL   82 (140)
Q Consensus         5 Ga~Vv~TD~~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~--~~~~~L   82 (140)
                      +.++++-|+|++++..                  ....++++.+.|--++      .+.+|+++.+-|+.+-  +....+
T Consensus       104 ~l~~~v~Dlp~vi~~~------------------~~~~rv~~~~gD~f~~------~p~aD~~~l~~vLHdw~d~~~~~i  159 (244)
T d1fp2a2         104 KLKCIVFDRPQVVENL------------------SGSNNLTYVGGDMFTS------IPNADAVLLKYILHNWTDKDCLRI  159 (244)
T ss_dssp             TCEEEEEECHHHHTTC------------------CCBTTEEEEECCTTTC------CCCCSEEEEESCGGGSCHHHHHHH
T ss_pred             CCeEEEecCHHHHHhC------------------cccCceEEEecCcccC------CCCCcEEEEEeecccCChHHHHHH
Confidence            4588999998775321                  1246788888775543      2468999999999763  455667


Q ss_pred             HHHHHHhcCCC---eEEEEEEE
Q 032462           83 LQTIFALSGPK---TTILLGYE  101 (140)
Q Consensus        83 ~~tl~~ll~~~---~~~~~~~~  101 (140)
                      ++-+..-+.|+   ++++|.-.
T Consensus       160 L~~~~~al~pgg~~~~lli~e~  181 (244)
T d1fp2a2         160 LKKCKEAVTNDGKRGKVTIIDM  181 (244)
T ss_dssp             HHHHHHHHSGGGCCCEEEEEEC
T ss_pred             HHHHHHHcCcccCCcEEEEEEe
Confidence            77777777776   67776544

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.83  E-value=1.5  Score=30.67  Aligned_cols=109  Identities=14%  Similarity=0.030  Sum_probs=61.5

Q ss_pred             EEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccc-----hH
Q 032462            7 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-----LE   80 (140)
Q Consensus         7 ~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~-----~~   80 (140)
                      +|++-|. +++++..++-...+........  ....+++++..=|--+   .-....+||+|| .|+.-....     -.
T Consensus        97 ~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~--~~~d~rv~i~~~Da~~---~l~~~~~yDvIi-~D~~~~~~~~~~L~t~  170 (276)
T d1mjfa_          97 EVIMVEIDEDVIMVSKDLIKIDNGLLEAML--NGKHEKAKLTIGDGFE---FIKNNRGFDVII-ADSTDPVGPAKVLFSE  170 (276)
T ss_dssp             EEEEEESCHHHHHHHHHHTCTTTTHHHHHH--TTCCSSEEEEESCHHH---HHHHCCCEEEEE-EECCCCC-----TTSH
T ss_pred             eEEEecCCHHHHHHHHHhhhhccchhhhhh--ccCCCCceEEEChHHH---HHhccCCCCEEE-EeCCCCCCCcccccCH
Confidence            8999998 8899999876544432111000  0123456655433211   111246899998 576432222     24


Q ss_pred             HHHHHHHHhcCCCeEEEEEEEe--cChhHHHHHHHHHHhcCeE
Q 032462           81 PLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFNV  121 (140)
Q Consensus        81 ~L~~tl~~ll~~~~~~~~~~~~--R~~~~~~~F~~~~~~~f~v  121 (140)
                      .+.+.+++.|+|+|.+.+-...  ..........+.+++.|..
T Consensus       171 eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~F~~  213 (276)
T d1mjfa_         171 EFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFDR  213 (276)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCSE
T ss_pred             HHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhhCCe
Confidence            6788899999999987653332  2233344555666666663

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=85.22  E-value=2.1  Score=29.46  Aligned_cols=73  Identities=7%  Similarity=-0.023  Sum_probs=46.2

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCccchHHHH
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLL   83 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~~~~~L~   83 (140)
                      +++|+..|. +..+...+++.                 .++....-+-   ...+.....||+|+....   +...    
T Consensus       108 ~~~~~giD~s~~~~~~a~~~~-----------------~~~~~~~~d~---~~l~~~~~sfD~v~~~~~---~~~~----  160 (268)
T d1p91a_         108 EITTFGLDVSKVAIKAAAKRY-----------------PQVTFCVASS---HRLPFSDTSMDAIIRIYA---PCKA----  160 (268)
T ss_dssp             TSEEEEEESCHHHHHHHHHHC-----------------TTSEEEECCT---TSCSBCTTCEEEEEEESC---CCCH----
T ss_pred             CCEEEEecchHhhhhhhhccc-----------------ccccceeeeh---hhccCCCCCEEEEeecCC---HHHH----
Confidence            468899998 77777665431                 2334433333   223334678999997544   3333    


Q ss_pred             HHHHHhcCCCeEEEEEEEecC
Q 032462           84 QTIFALSGPKTTILLGYEIRS  104 (140)
Q Consensus        84 ~tl~~ll~~~~~~~~~~~~R~  104 (140)
                      .-+.++++|+|.++++....+
T Consensus       161 ~e~~rvLkpgG~l~~~~p~~~  181 (268)
T d1p91a_         161 EELARVVKPGGWVITATPGPR  181 (268)
T ss_dssp             HHHHHHEEEEEEEEEEEECTT
T ss_pred             HHHHHHhCCCcEEEEEeeCCc
Confidence            446778999999998877543

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.76  E-value=0.9  Score=32.77  Aligned_cols=104  Identities=12%  Similarity=-0.008  Sum_probs=58.5

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEeecccCcc------c
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH------L   78 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~IlasDviY~~~------~   78 (140)
                      .+|++-|. ++|++..++-...|....        ..+++++..=|--+-  ......+||+||. |+ +++.      .
T Consensus       131 ~~v~~VEID~~Vv~~a~~~~~~~~~~~--------~dprv~i~i~Da~~~--l~~~~~~yDvII~-D~-~dp~~~~~~L~  198 (312)
T d2b2ca1         131 EKVTMCEIDEMVIDVAKKFLPGMSCGF--------SHPKLDLFCGDGFEF--LKNHKNEFDVIIT-DS-SDPVGPAESLF  198 (312)
T ss_dssp             CEEEEECSCHHHHHHHHHHCTTTSGGG--------GCTTEEEECSCHHHH--HHHCTTCEEEEEE-CC-C----------
T ss_pred             ceEEEEcccHHHHHHHHhhchhhcccc--------CCCCeEEEEchHHHH--HHhCCCCCCEEEE-cC-CCCCCcchhhh
Confidence            38999999 789999998765554332        234555543222111  1234678999995 54 2321      2


Q ss_pred             hHHHHHHHHHhcCCCeEEEEEEE--ecChhHHHHHHHHHHhcCeE
Q 032462           79 LEPLLQTIFALSGPKTTILLGYE--IRSTSVHEQMLQMWKSNFNV  121 (140)
Q Consensus        79 ~~~L~~tl~~ll~~~~~~~~~~~--~R~~~~~~~F~~~~~~~f~v  121 (140)
                      -..+.+.+++.|+|+|.+..=..  .-..+......+.+++.|..
T Consensus       199 t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~  243 (312)
T d2b2ca1         199 GQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPA  243 (312)
T ss_dssp             ---HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSE
T ss_pred             hHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccce
Confidence            35567788888999998765322  12223344455555666653

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.19  E-value=0.43  Score=33.37  Aligned_cols=60  Identities=18%  Similarity=0.105  Sum_probs=43.5

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEe
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGT   70 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~Ilas   70 (140)
                      ||..|++|+++|. ++-++.+.+.+..+..          ...++.+...|-.+++....       ...+.|++|..
T Consensus        24 la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~----------~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnn   91 (274)
T d1xhla_          24 FAKEGAQVTITGRNEDRLEETKQQILKAGV----------PAEKINAVVADVTEASGQDDIINTTLAKFGKIDILVNN   91 (274)
T ss_dssp             HHHTTCEEEEEESCHHHHHHHHHHHHHTTC----------CGGGEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             HHHCCCEEEEEECCHHHHHHHHHHHHHcCC----------CCcceEEEEeeCCCHHHHHHHHHHHHHHcCCceEEEee
Confidence            4678999999998 6677877777776543          23578888899888764321       24678988864

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.45  E-value=1.9  Score=30.50  Aligned_cols=103  Identities=14%  Similarity=0.052  Sum_probs=63.9

Q ss_pred             CEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-cCCCccEEEEeecccCcc------
Q 032462            6 CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEH------   77 (140)
Q Consensus         6 a~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-~~~~~D~IlasDviY~~~------   77 (140)
                      .+|++-|. ++|++..++-...|....        ..+++++..=|--+.  ... ...+||+||. |+. ++.      
T Consensus       105 ~~i~~VEiD~~Vi~~~~~~f~~~~~~~--------~~~r~~i~~~Da~~~--l~~~~~~~yDvIi~-D~~-dp~~~~~~L  172 (290)
T d1xj5a_         105 EQIDMCEIDKMVVDVSKQFFPDVAIGY--------EDPRVNLVIGDGVAF--LKNAAEGSYDAVIV-DSS-DPIGPAKEL  172 (290)
T ss_dssp             CEEEEEESCHHHHHHHHHHCHHHHGGG--------GSTTEEEEESCHHHH--HHTSCTTCEEEEEE-CCC-CTTSGGGGG
T ss_pred             eeeEEecCCHHHHHHHHHhchhhhccc--------cCCCcEEEEccHHHH--HhhccccCccEEEE-cCC-CCCCcchhh
Confidence            38999999 889999998776665432        235665554443221  111 2458999995 643 221      


Q ss_pred             chHHHHHHHHHhcCCCeEEEEEEEec--ChhHHHHHHHHHHhcCe
Q 032462           78 LLEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFN  120 (140)
Q Consensus        78 ~~~~L~~tl~~ll~~~~~~~~~~~~R--~~~~~~~F~~~~~~~f~  120 (140)
                      .-..+.+.+++.|+|+|.+.+-....  ..+......+.+++-|.
T Consensus       173 ~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~  217 (290)
T d1xj5a_         173 FEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFK  217 (290)
T ss_dssp             GSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCS
T ss_pred             CCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhcc
Confidence            23568889999999999987644432  23334455556655553

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=81.41  E-value=5.4  Score=26.33  Aligned_cols=84  Identities=15%  Similarity=0.027  Sum_probs=54.7

Q ss_pred             CCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccccCCCccEEEEe--ecccCcc----
Q 032462            5 GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT--DVVYAEH----   77 (140)
Q Consensus         5 Ga~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~~~~~~D~Ilas--DviY~~~----   77 (140)
                      ...++.-|. +..+..+.+++..++.            .++.+..-|..+-.. ......+|.|...  |-.....    
T Consensus        55 ~~~~iGid~~~~~v~~a~~~~~~~~l------------~Ni~~~~~da~~l~~-~~~~~~~~~i~i~fPdPw~K~~h~kr  121 (204)
T d1yzha1          55 DINYIGIDIQKSVLSYALDKVLEVGV------------PNIKLLWVDGSDLTD-YFEDGEIDRLYLNFSDPWPKKRHEKR  121 (204)
T ss_dssp             TSEEEEEESCHHHHHHHHHHHHHHCC------------SSEEEEECCSSCGGG-TSCTTCCSEEEEESCCCCCSGGGGGG
T ss_pred             CCceEEEeccHHHHHHHHHhhhhhcc------------ccceeeecCHHHHhh-hccCCceehhcccccccccchhhhhh
Confidence            458899997 7788887777776653            467777666544321 1124567877521  1111111    


Q ss_pred             --chHHHHHHHHHhcCCCeEEEEEEE
Q 032462           78 --LLEPLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        78 --~~~~L~~tl~~ll~~~~~~~~~~~  101 (140)
                        ..+.+++.+...|+|+|.++++.-
T Consensus       122 Rl~~~~~l~~~~~~LkpgG~l~i~TD  147 (204)
T d1yzha1         122 RLTYKTFLDTFKRILPENGEIHFKTD  147 (204)
T ss_dssp             STTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred             hhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence              137899999999999999988753

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=80.73  E-value=0.63  Score=32.26  Aligned_cols=59  Identities=19%  Similarity=0.111  Sum_probs=40.6

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEe
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGT   70 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~Ilas   70 (140)
                      ||+.|++|+++|. ++-++.+...+.....           ..++.....|-.+++....       ...+.|++|..
T Consensus        24 la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~-----------~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnn   90 (258)
T d1iy8a_          24 LAAEGAKLSLVDVSSEGLEASKAAVLETAP-----------DAEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNN   90 (258)
T ss_dssp             HHHTTCEEEEEESCHHHHHHHHHHHHHHCT-----------TCCEEEEECCTTSHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred             HHHCCCEEEEEECCHHHHHHHHHHHHhhCC-----------CCeEEEEeccCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence            5778999999997 6666666555544332           3567888889888765431       24678988864

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=80.35  E-value=0.64  Score=32.19  Aligned_cols=60  Identities=15%  Similarity=0.116  Sum_probs=42.5

Q ss_pred             CccCCCEEEEecc-hhHHHHHHHHHHHhhcccccCCCCCCCCCceEEEEeecCCCccccc-------cCCCccEEEEe
Q 032462            1 MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGT   70 (140)
Q Consensus         1 lA~lGa~Vv~TD~-~~vl~~l~~Ni~~N~~~~~~~~~~~~~~~~v~~~~LdWg~~~~~~~-------~~~~~D~Ilas   70 (140)
                      ||+.|++|+++|. ++-++.+...+.....          ...++.....|-.+.+....       ...+.|++|-+
T Consensus        25 la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~----------~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnn   92 (264)
T d1spxa_          25 FAREGAKVTITGRHAERLEETRQQILAAGV----------SEQNVNSVVADVTTDAGQDEILSTTLGKFGKLDILVNN   92 (264)
T ss_dssp             HHHTTCEEEEEESCHHHHHHHHHHHHHTTC----------CGGGEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             HHHCCCEEEEEECCHHHHHHHHHHHHhcCC----------CcCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEeecc
Confidence            5678999999997 6677777777765542          23568888888887764321       24688988754

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.17  E-value=0.37  Score=32.08  Aligned_cols=41  Identities=24%  Similarity=0.407  Sum_probs=34.1

Q ss_pred             CCCccEEEEeeccc--CccchHHHHHHHHHhcCCCeEEEEEEE
Q 032462           61 APPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTILLGYE  101 (140)
Q Consensus        61 ~~~~D~IlasDviY--~~~~~~~L~~tl~~ll~~~~~~~~~~~  101 (140)
                      ..+||+|++-.|+-  +++....+++.+...++|+|..++++.
T Consensus       130 ~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~s  172 (193)
T d1af7a2         130 PGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHS  172 (193)
T ss_dssp             CCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             CCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            46899999999865  346778899999999999999988854