Citrus Sinensis ID: 032471

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MVGLSIVLENQKHGGFNKKSPQVINKATMIINNKPSFSSASSSDAANSHSTFPVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKKENCSFAAMNPRSTSSAASASSSRHRKGTRNRAGGFVY
Secondary Structure (PSIPRED)
ccEEEEEEcccccccccccccEEEcccEEEEEccccccccccccccccccccccccHHHccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEccccccccccccEEEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEc
Coil and Loop (DISEMBL)
MVGLSIVLEnqkhggfnkkspqvINKATMiinnkpsfssasssdaanshstfpvptflqhcflckqtllpgkdiymykgdrafcsVECRCRQIFMDEEEslkkencsfaamnprstssaasasssrhrkgtrnraggfvy
Flexible Loop (DISEMBL)
MVGLSIVLenqkhggfnkkspqviNKATMIINNKPSFSSASSSDAANSHSTFPVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKKENCSFAAMNPRStssaasasssrhrkgtrnraggfvy
Low Complexity Region (SEG)
MVGLSIVLENQKHGGFNKKSPQVINKATMIINNKPsfssasssdaanshsTFPVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKKENCSFAAMNPRstssaasasssRHRKGTRNRAGGFVY
Disordered region (IsUnstruct)
***************************************************FPVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMD********************************************
Disordered Region (DISOPRED)
MVGLSIV****************INKA****************************TFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIF**********************************************
Disordered Region (DISEMBL)
MVGLSIVLENQKHGGFNKKSPQVINKATMIINNKPS*************STFPVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKKENCSFAA******************************
Disordered Region (DISPRO)
MVGLSIVLENQKHGGFNKKSPQVINKATMIINN*****************TFPVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLK**************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGLSIVLENQKHGGFNKKSPQVINKATMIINNKPSFSSASSSDAANSHSTFPVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKKENCSFAAMNPRSTSSAASASSSRHRKGTRNRAGGFVY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
118481994	157	unknown [Populus trichocarpa]	1.0	0.891	0.624	5e-44
224130404	157	predicted protein [Populus trichocarpa]	1.0	0.891	0.624	7e-44
224107102	143	predicted protein [Populus trichocarpa]	0.971	0.951	0.646	2e-42
118488896	143	unknown [Populus trichocarpa x Populus d	0.971	0.951	0.639	3e-40
225431760	143	PREDICTED: uncharacterized protein LOC10	0.957	0.937	0.644	5e-39
356564204	133	PREDICTED: uncharacterized protein LOC10	0.921	0.969	0.590	9e-37
255551807	152	conserved hypothetical protein [Ricinus	0.992	0.914	0.627	8e-36
388497946	150	unknown [Lotus japonicus]	1.0	0.933	0.550	2e-35
388511191	150	unknown [Lotus japonicus]	1.0	0.933	0.550	2e-35
356521843	135	PREDICTED: uncharacterized protein LOC10	0.95	0.985	0.598	6e-35

>gi|118481994|gb|ABK92928.1| unknown [Populus trichocarpa]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 98/157 (62%), Positives = 116/157 (73%), Gaps = 17/157 (10%)

Query: 1   MVGLSIVLENQKHGGFNKKSPQVINKATMI---INNKPSFSS-----ASSSDAANSHSTF 52
           MVGLSIVLE QK G  N K+PQVINKATM+   I+NKPS        A++   +  + +F
Sbjct: 1   MVGLSIVLEAQKSGSVNSKTPQVINKATMMMMMISNKPSSGPPSFSSATAPLPSYRNCSF 60

Query: 53  PVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKKENCSFAAMN 112
           PVP FLQ CFLC Q LLPGKDIYMYKGDRAFCSVECRCRQIFMDEEE+++KENCSF+AM 
Sbjct: 61  PVPAFLQQCFLCGQKLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEETMRKENCSFSAMK 120

Query: 113 PRSTSSAASAS---------SSRHRKGTRNRAGGFVY 140
           P  +++A+S+S         + RHRK TRNRAGGF Y
Sbjct: 121 PTGSAAASSSSATKSTSTTPAYRHRKTTRNRAGGFAY 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130404|ref|XP_002328600.1| predicted protein [Populus trichocarpa] gi|222838582|gb|EEE76947.1| predicted protein [Populus trichocarpa]

 Score =  181 bits (460), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 98/157 (62%), Positives = 117/157 (74%), Gaps = 17/157 (10%)

Query: 1   MVGLSIVLENQKHGGFNKKSPQVINKATMI---INNKPSFSS-----ASSSDAANSHSTF 52
           MVGLSIVLE QK G  N K+PQVINKATM+   I+NKPS        A++   +  + +F
Sbjct: 1   MVGLSIVLEAQKSGSVNSKTPQVINKATMMMMMISNKPSSGPPSFSSATAPLPSYRNCSF 60

Query: 53  PVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKKENCSFAAMN 112
           PVP FLQ CFLC Q LLPGKDIYMYKGDRAFCSVECRCRQIFMDEEE+++KENCSF+AM 
Sbjct: 61  PVPAFLQQCFLCGQKLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEETIRKENCSFSAMK 120

Query: 113 PRSTSSAASASSS---------RHRKGTRNRAGGFVY 140
           P  +++A+S+S++         RHRK TRNRAGGF Y
Sbjct: 121 PTGSAAASSSSATKSTSTTAAYRHRKTTRNRAGGFAY 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107102|ref|XP_002314376.1| predicted protein [Populus trichocarpa] gi|222863416|gb|EEF00547.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/147 (64%), Positives = 106/147 (72%), Gaps = 11/147 (7%)

Query: 1   MVGLSIVLENQKHGGFNKKSPQVINKATMIINNKPSFSSA-SSSDAANSHSTFPVPTFLQ 59
           MVGLSIVLE  K G     + QVINK TM+INNKP+     SSS   +   +FPVPTFL 
Sbjct: 1   MVGLSIVLETPKSG----SALQVINKVTMMINNKPTSPPGFSSSRNHSPRFSFPVPTFLD 56

Query: 60  HCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKKENCSFAAMNP------ 113
            CF C Q LLPGKDIYMYKGDR FCSVECRCRQIF+DEEE+L+KENCSFAAM P      
Sbjct: 57  QCFFCGQKLLPGKDIYMYKGDRGFCSVECRCRQIFLDEEETLRKENCSFAAMRPTGASAS 116

Query: 114 RSTSSAASASSSRHRKGTRNRAGGFVY 140
            S  S +S ++SRHRKGTRNR GGF Y
Sbjct: 117 ASAKSTSSTAASRHRKGTRNREGGFAY 143

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488896|gb|ABK96257.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 94/147 (63%), Positives = 107/147 (72%), Gaps = 11/147 (7%)

Query: 1   MVGLSIVLENQKHGGFNKKSPQVINKATMIINNKPSFSSASSSDAANS-HSTFPVPTFLQ 59
           MVGLSIVLE  K G     + QVINK T++INNKP+   + SS   +S   +FPVPTFL 
Sbjct: 1   MVGLSIVLETPKSG----SALQVINKVTLMINNKPTSPPSFSSSRNHSPRFSFPVPTFLD 56

Query: 60  HCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKKENCSFAAMNP------ 113
            CF C Q LLPGKDIYMYKGDR FCSVECRCRQIF+DEEE+L+KENCSFAAM P      
Sbjct: 57  QCFFCGQKLLPGKDIYMYKGDRGFCSVECRCRQIFLDEEETLRKENCSFAAMKPTGASAS 116

Query: 114 RSTSSAASASSSRHRKGTRNRAGGFVY 140
            S  S +S ++SRHRKGTRNR GGF Y
Sbjct: 117 ASAKSTSSTAASRHRKGTRNREGGFAY 143

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431760|ref|XP_002270507.1| PREDICTED: uncharacterized protein LOC100261891 [Vitis vinifera] gi|296083344|emb|CBI22980.3| unnamed protein product [Vitis vinifera]

 Score =  165 bits (418), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 96/149 (64%), Positives = 109/149 (73%), Gaps = 15/149 (10%)

Query: 1   MVGLSIVLENQKHGGFNKKSPQVINKATMIINNKPSFSSASSSDAANSHSTFPVP---TF 57
           MVGLSIVLE QK  G NKK+PQVINK TM+    P F S  +    NSHS   +P   TF
Sbjct: 1   MVGLSIVLEAQK--GINKKTPQVINKITMMTKPTP-FPSPPAR--WNSHSPL-LPAATTF 54

Query: 58  LQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKKENCSFAAMN----- 112
           L  CFLCKQ LLPGKDIYMYKGDRAFCSVECRCRQIFMDEEE+++++NCS AAM      
Sbjct: 55  LDECFLCKQKLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEETVRRDNCSLAAMKPTSAS 114

Query: 113 -PRSTSSAASASSSRHRKGTRNRAGGFVY 140
              S+SS +S++SSR RKGTR RAGGF Y
Sbjct: 115 SCPSSSSPSSSTSSRLRKGTRTRAGGFAY 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564204|ref|XP_003550346.1| PREDICTED: uncharacterized protein LOC100818870 [Glycine max]

 Score =  158 bits (399), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 85/144 (59%), Positives = 104/144 (72%), Gaps = 15/144 (10%)

Query: 1   MVGLSIVLENQKHGGFNKKSPQVINKATMI----INNKPSFSSASSSDAANSHSTFPVPT 56
           MVGLS+VLE QK    NKK+PQVINK TM+    I+NKPS             S F  PT
Sbjct: 1   MVGLSVVLEAQK-SCINKKTPQVINKTTMLMLSSIHNKPS---------PQPSSLFQPPT 50

Query: 57  FLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKKENCSFAAMNPRST 116
           FL  CFLC + LLPGKDIYMYKGDRAFCSV+CRC+QIF DEEE+++KE CS AAM P ++
Sbjct: 51  FLDQCFLCGKRLLPGKDIYMYKGDRAFCSVDCRCKQIFSDEEEAIQKEKCSLAAMRP-TS 109

Query: 117 SSAASASSSRHRKGTRNRAGGFVY 140
           SS++++++  HRKGTRNR GG  +
Sbjct: 110 SSSSTSTARHHRKGTRNRGGGAYF 133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551807|ref|XP_002516949.1| conserved hypothetical protein [Ricinus communis] gi|223544037|gb|EEF45563.1| conserved hypothetical protein [Ricinus communis]

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 96/153 (62%), Positives = 111/153 (72%), Gaps = 14/153 (9%)

Query: 1   MVGLSIVLENQK--HGGF----NKKSPQVINKAT--MIINNKPSFSSASSSDAANSHSTF 52
           MVGLSI+LE Q+    GF     KK+PQVINKAT  M++ NK   S   SS + +S S+F
Sbjct: 1   MVGLSILLEAQQKQQVGFANNNKKKTPQVINKATLNMMMINKLP-SPLPSSTSLSSLSSF 59

Query: 53  PVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKKENCSFAAMN 112
             PTFL+HCFLC Q LLPGKDIYMYKGDRAFCSVECRCRQIF DEEE+L+KENCSFAAM 
Sbjct: 60  KPPTFLEHCFLCGQKLLPGKDIYMYKGDRAFCSVECRCRQIFTDEEETLRKENCSFAAMK 119

Query: 113 -----PRSTSSAASASSSRHRKGTRNRAGGFVY 140
                  +   ++S S+SRH K TRNRAGGF Y
Sbjct: 120 PTSTSAATAPPSSSTSASRHSKSTRNRAGGFAY 152

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497946|gb|AFK37039.1| unknown [Lotus japonicus]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 108/149 (72%), Gaps = 9/149 (6%)

Query: 1   MVGLSIVLENQKHGGFNKKSPQVINKATMIINNKPSFSSASSSDAA------NSHSTFPV 54
           MVGLS+VLE QK GG +K++PQVINK  M+ ++      +SSS ++      + HS F  
Sbjct: 2   MVGLSVVLEAQKGGGVSKETPQVINKTMMLSSSSSINKHSSSSFSSSSMPWNSQHSAFQE 61

Query: 55  PTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKKENCSFAAMNP- 113
           P FL+ CFLC++ L+ GKDIYMYKGDRAFCS ECRC+QIFMDEEE+++ ENCS AAM P 
Sbjct: 62  PAFLELCFLCRKRLMQGKDIYMYKGDRAFCSEECRCKQIFMDEEETVQTENCSMAAMRPT 121

Query: 114 --RSTSSAASASSSRHRKGTRNRAGGFVY 140
              S+S ++S+S+   +KG+RNR GGF Y
Sbjct: 122 SSASSSVSSSSSTPHRKKGSRNRRGGFAY 150

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511191|gb|AFK43657.1| unknown [Lotus japonicus]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 108/149 (72%), Gaps = 9/149 (6%)

Query: 1   MVGLSIVLENQKHGGFNKKSPQVINKATMIINNKPSFSSASSSDAAN------SHSTFPV 54
           MVGLS+VLE QK GG +K++PQVINK  M+ ++      +SSS +++       HS F  
Sbjct: 2   MVGLSVVLEAQKGGGVSKETPQVINKTMMLSSSSSINKHSSSSFSSSSMSWNSQHSAFQE 61

Query: 55  PTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKKENCSFAAMNP- 113
           P FL+ CFLC++ L+ GKDIYMYKGDRAFCS ECRC+QIFMDEEE+++ ENCS AAM P 
Sbjct: 62  PAFLELCFLCRKRLMQGKDIYMYKGDRAFCSEECRCKQIFMDEEETVQTENCSMAAMRPT 121

Query: 114 --RSTSSAASASSSRHRKGTRNRAGGFVY 140
              S+S ++S+S+   +KG+RNR GGF Y
Sbjct: 122 SSASSSVSSSSSTPHRKKGSRNRRGGFAY 150

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521843|ref|XP_003529560.1| PREDICTED: uncharacterized protein LOC100776779 [Glycine max]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 82/137 (59%), Positives = 99/137 (72%), Gaps = 4/137 (2%)

Query: 1   MVGLSIVLENQKHGGFNKKSPQVINKATMIINNKPSFSSASSSDAANSHSTFPVPTFLQH 60
           MVGLS+VLE QK    NKK+PQVINK +M+++   S  +  S       S F  PTFL  
Sbjct: 1   MVGLSVVLEAQK-SCINKKTPQVINKTSMMLS---SIHNKPSPPLPQPSSLFQPPTFLDQ 56

Query: 61  CFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKKENCSFAAMNPRSTSSAA 120
           CFLC + LLPGKDIYMYKGDRAFCSV+CRC+QIF DEEE+++KE CS AAM P S+S++ 
Sbjct: 57  CFLCGKRLLPGKDIYMYKGDRAFCSVDCRCKQIFTDEEEAIQKEKCSLAAMRPTSSSAST 116

Query: 121 SASSSRHRKGTRNRAGG 137
           S +S  HRKGTRNR G 
Sbjct: 117 STASHHHRKGTRNRGGA 133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
TAIR|locus:2155174	150	AT5G49120 "AT5G49120" [Arabido	0.95	0.886	0.426	7.6e-25
TAIR|locus:2030611	147	AT1G22160 "AT1G22160" [Arabido	0.335	0.319	0.617	3.9e-12
TAIR|locus:2171047	177	AT5G47060 "AT5G47060" [Arabido	0.371	0.293	0.566	9.4e-11
TAIR|locus:2029421	162	AT1G78020 [Arabidopsis thalian	0.335	0.290	0.553	9.4e-11
TAIR|locus:504955245	126	AT4G39795 "AT4G39795" [Arabido	0.3	0.333	0.619	2.5e-10
TAIR|locus:2129331	159	AT4G17670 "AT4G17670" [Arabido	0.371	0.327	0.528	1.1e-09
TAIR|locus:2202195	215	AT1G19200 "AT1G19200" [Arabido	0.335	0.218	0.568	1.4e-09
TAIR|locus:2027278	222	AT1G74940 "AT1G74940" [Arabido	0.371	0.234	0.555	1.4e-09
TAIR|locus:2077031	267	AT3G22550 "AT3G22550" [Arabido	0.357	0.187	0.52	4.2e-09
TAIR|locus:2177739	113	AT5G65040 "AT5G65040" [Arabido	0.314	0.389	0.522	5.9e-09

TAIR|locus:2155174 AT5G49120 "AT5G49120" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 67/157 (42%), Positives = 85/157 (54%)

Query:     1 MVGLSIVLE---------NQKHGGFNKK--------SPQVINKATMIINNKPXXXXXXXX 43
             MVGLSIVLE         N  +   NK         SP+V+NKA +I+            
Sbjct:     1 MVGLSIVLEMTNNNNNNNNNNNNNNNKNPLSEGVLISPKVVNKANIIVTT------AVTT 54

Query:    44 XXXXXXXTFPVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKK 103
                     +    FL+HCFLC++ LLP KDIYMYKGDRAFCSVECR +Q+ MDEEESL++
Sbjct:    55 DTTNLRRCYQDSGFLEHCFLCRRKLLPAKDIYMYKGDRAFCSVECRSKQMIMDEEESLRR 114

Query:   104 ENCSFAAMNPRXXXXXXXXXXXRHRKGTRNRAGGFVY 140
             E CS   +  +           R+R+  RN+AGGF Y
Sbjct:   115 EYCSLMDVKKKKFDSPATAPS-RYRRDPRNQAGGFAY 150

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2030611 AT1G22160 "AT1G22160" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 29/47 (61%), Positives = 38/47 (80%)

Query:    57 FLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKK 103
             FL+ C LCK+ L+ G+DIYMY+GDRAFCS+ECR +QI +DE +  KK
Sbjct:    78 FLRSCSLCKRLLVHGRDIYMYRGDRAFCSLECRQQQITVDERKEKKK 124

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171047 AT5G47060 "AT5G47060" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 30/53 (56%), Positives = 35/53 (66%)

Query:    55 PTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKKENCS 107
             P FL  CFLCK+ L   +DIYMY+GD  FCS ECR  QI  DE +  KK+N S
Sbjct:    95 PHFLDSCFLCKKPLGDNRDIYMYRGDTPFCSEECRQEQIERDEAKE-KKQNLS 146

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2029421 AT1G78020 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 26/47 (55%), Positives = 35/47 (74%)

Query:    57 FLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKK 103
             FL+ C LC++ L+PG+DIYMY+GD+AFCS ECR  Q+  DE +   K
Sbjct:    89 FLRSCALCERLLVPGRDIYMYRGDKAFCSSECRQEQMAQDERKEKGK 135

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:504955245 AT4G39795 "AT4G39795" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query:    56 TFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDE 97
             +FL +C  CK+ L PG+DIYMYKGD AFCS+ECR +Q+  DE
Sbjct:    72 SFLVNCGFCKRGLAPGRDIYMYKGDAAFCSIECREQQMEHDE 113

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129331 AT4G17670 "AT4G17670" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 28/53 (52%), Positives = 35/53 (66%)

Query:    55 PTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKKENCS 107
             P FL  CFLCK+ L   +DI+MY+GD  FCS ECR  QI  DE +  KK++ S
Sbjct:    74 PHFLDSCFLCKKRLGDNRDIFMYRGDTPFCSEECREEQIERDEAKE-KKQSLS 125

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2202195 AT1G19200 "AT1G19200" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 29/51 (56%), Positives = 35/51 (68%)

Query:    55 PTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKKEN 105
             P FL  C LCK+ L  GKDIYMYKGD  FCS ECR  +I    E+SLK+++
Sbjct:   148 PDFLTSCCLCKKKL-QGKDIYMYKGDEGFCSKECRSLKIM---EDSLKEQH 194

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2027278 AT1G74940 "AT1G74940" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 30/54 (55%), Positives = 33/54 (61%)

Query:    55 PT-FLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLKKENCS 107
             PT FL  C LCK+ L  GKDIYMYKG+  FCS ECR  QI  DE +   K   S
Sbjct:   147 PTEFLSSCCLCKKKL-QGKDIYMYKGEMGFCSAECRSVQIMNDERQEQCKTQVS 199

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2077031 AT3G22550 "AT3G22550" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 4.2e-09, P = 4.2e-09
 Identities = 26/50 (52%), Positives = 33/50 (66%)

Query:    53 PVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEESLK 102
             P  +FL  C  CK++L P  DI+MY+GDRAFCS ECR  ++ M EE   K
Sbjct:   218 PPDSFLSCCCNCKKSLGPRDDIFMYRGDRAFCSSECRSIEMMMSEENDTK 267

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2177739 AT5G65040 "AT5G65040" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 23/44 (52%), Positives = 35/44 (79%)

Query:    57 FLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEES 100
             FL+ C LC ++L   +DIYMY+G+ AFCS+ECR +QI +DE+++
Sbjct:    57 FLKTCSLCNRSLCHHRDIYMYRGNNAFCSLECREKQIKLDEKKA 100

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	140
pfam04570	59	pfam04570, DUF581, Protein of unknown function (DU	7e-24

>gnl|CDD|218153 pfam04570, DUF581, Protein of unknown function (DUF581)

 Score = 87.0 bits (216), Expect = 7e-24
 Identities = 31/58 (53%), Positives = 38/58 (65%)

Query: 42 SSDAANSHSTFPVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEE 99
             AA      P   FL  CFLCK+ L PGKDIYMY+G++AFCS ECR +Q+ MDE +
Sbjct: 1  DPSAAGDGGGSPTGHFLSSCFLCKKKLGPGKDIYMYRGEKAFCSEECRQQQMEMDEAK 58

Family of uncharacterized proteins. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
PF04570	58	DUF581: Protein of unknown function (DUF581); Inte	99.94
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	94.69
COG4068	64	Uncharacterized protein containing a Zn-ribbon [Fu	93.03
PF12855	43	Ecl1: Life-span regulatory factor; InterPro: IPR02	92.99
PF06467	43	zf-FCS: MYM-type Zinc finger with FCS sequence mot	92.84
COG2075	66	RPL24A Ribosomal protein L24E [Translation, riboso	90.72
PF04640	72	PLATZ: PLATZ transcription factor; InterPro: IPR00	87.99
PRK00418	62	DNA gyrase inhibitor; Reviewed	84.2
PF04945	47	YHS: YHS domain; InterPro: IPR007029 This short pr	84.16
PF03884	57	DUF329: Domain of unknown function (DUF329); Inter	83.54
smart00746	39	TRASH metallochaperone-like domain.	80.11

>PF04570 DUF581: Protein of unknown function (DUF581); InterPro: IPR007650 This is a family of uncharacterised proteins

Probab=99.94  E-value=2.7e-28  Score=165.09  Aligned_cols=51  Identities=65%  Similarity=1.260  Sum_probs=47.7

Q ss_pred             CCCCCchhhhccCccCCCCCCCCCceEEEcCCCcccChhhHHHHHHhhHHH
Q 032471           49 HSTFPVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEEE   99 (140)
Q Consensus        49 ~~~~~~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR~~qI~~DE~~   99 (140)
                      ..++++.+||++|++|+|+|.+|+||||||||+||||.|||++||++||++
T Consensus         7 ~~~~~~~~FL~~C~~C~k~L~~~~DiymYrGd~aFCS~ECR~~qi~~de~~   57 (58)
T PF04570_consen    7 GSPFPSEHFLSFCYLCKKKLDPGKDIYMYRGDKAFCSEECRSQQILMDEEK   57 (58)
T ss_pred             CCCCCcHHHHHHHHccCCCCCCCCCeeeeccccccccHHHHHHHHHHHHhc
Confidence            346788999999999999999999999999999999999999999999953

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=94.69  E-value=0.023  Score=38.83  Aligned_cols=27  Identities=37%  Similarity=0.859  Sum_probs=21.7

Q ss_pred             ccCccCCCCCCCCCceEEEcCCCcccChhhHHHHHH
Q 032471           59 QHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIF   94 (140)
Q Consensus        59 ~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR~~qI~   94 (140)
                      +.|-.|.+.+.+         |..|||.+||+....
T Consensus         4 kHC~~CG~~Ip~---------~~~fCS~~C~~~~~k   30 (59)
T PF09889_consen    4 KHCPVCGKPIPP---------DESFCSPKCREEYRK   30 (59)
T ss_pred             CcCCcCCCcCCc---------chhhhCHHHHHHHHH
Confidence            459999999964         689999999965443

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]

Probab=93.03  E-value=0.1  Score=36.50  Aligned_cols=29  Identities=34%  Similarity=0.894  Sum_probs=23.4

Q ss_pred             ccCccCCCCCCCCCceEEEcCCCcccChhhHHHHHHhhHH
Q 032471           59 QHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDEE   98 (140)
Q Consensus        59 ~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR~~qI~~DE~   98 (140)
                      +.|--|.+.+.+|         .-|||+||+  +|+..|.
T Consensus         9 ~HC~VCg~aIp~d---------e~~CSe~C~--eil~ker   37 (64)
T COG4068           9 RHCVVCGKAIPPD---------EQVCSEECG--EILNKER   37 (64)
T ss_pred             ccccccCCcCCCc---------cchHHHHHH--HHHHHHH
Confidence            3599999999654         469999999  7888774

>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]

Probab=92.99  E-value=0.041  Score=35.49  Aligned_cols=30  Identities=30%  Similarity=0.812  Sum_probs=23.6

Q ss_pred             hhhccCccCCCCCCCCCceEEEcCCCcccChhhHHH
Q 032471           56 TFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCR   91 (140)
Q Consensus        56 ~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR~~   91 (140)
                      .|+++|-.|.|.+....      .+..+||++||..
T Consensus         4 ~F~~yC~~Cdk~~~~~~------~~~lYCSe~Cr~~   33 (43)
T PF12855_consen    4 AFNDYCIVCDKQIDPPD------DGSLYCSEECRLK   33 (43)
T ss_pred             hhhhHHHHhhccccCCC------CCccccCHHHHhH
Confidence            79999999999985432      2466799999953

Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.

>PF06467 zf-FCS: MYM-type Zinc finger with FCS sequence motif; InterPro: IPR010507 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.84  E-value=0.071  Score=32.23  Aligned_cols=34  Identities=26%  Similarity=0.619  Sum_probs=21.3

Q ss_pred             hccCccCCCCCCCCCc--eEEEcC-CCcccChhhHHH
Q 032471           58 LQHCFLCKQTLLPGKD--IYMYKG-DRAFCSVECRCR   91 (140)
Q Consensus        58 L~~C~~CkK~L~~gkD--IyMYRG-e~AFCS~ECR~~   91 (140)
                      ...|..|++.+....+  +..|.| ..-|||..|+..
T Consensus         6 ~~~C~~C~~~~~~~~~~~~~~~~g~~~~FCS~~C~~~   42 (43)
T PF06467_consen    6 MKTCSYCKKYIPNKPTMIEVQYDGKMKQFCSQSCLSS   42 (43)
T ss_dssp             CEE-TTT--EEECCC----EE-TTTTSCCSSHHHHHH
T ss_pred             CCcCcccCCcccCCCccccccccCcccChhCHHHHhh
Confidence            4569999999955555  677776 468999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. MYM-type zinc fingers were identified in MYM family proteins []. Human protein Q14202 from SWISSPROT is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1 []. Q9UBW7 from SWISSPROT is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1 []; in atypical myeloproliferative disorders it is rearranged []. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2L8E_A 2DAS_A.

>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]

Probab=90.72  E-value=0.23  Score=35.03  Aligned_cols=32  Identities=31%  Similarity=0.786  Sum_probs=28.2

Q ss_pred             ccCccCCCCCCCCCceEEEcCCCc---ccChhhHH
Q 032471           59 QHCFLCKQTLLPGKDIYMYKGDRA---FCSVECRC   90 (140)
Q Consensus        59 ~~C~~CkK~L~~gkDIyMYRGe~A---FCS~ECR~   90 (140)
                      ..|.+|.++|.||.-|+.-|+|..   |||..|+.
T Consensus         4 ~~CsFcG~~I~PGtG~m~Vr~Dg~v~~FcssKc~k   38 (66)
T COG2075           4 RVCSFCGKKIEPGTGIMYVRNDGKVLRFCSSKCEK   38 (66)
T ss_pred             eEecCcCCccCCCceEEEEecCCeEEEEechhHHH
Confidence            469999999999999988888764   99999997

>PF04640 PLATZ: PLATZ transcription factor; InterPro: IPR006734 This family includes a conserved region in several uncharacterised plant proteins

Probab=87.99  E-value=0.36  Score=34.18  Aligned_cols=44  Identities=36%  Similarity=0.693  Sum_probs=28.4

Q ss_pred             hhhhccee-eeeCCCCCCCCCCccccCCCCCCCchhhhccCccCCCCCCCCCceEEEcCCCcccChhh
Q 032471           22 QVINKATM-IINNKPSFSSASSSDAANSHSTFPVPTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVEC   88 (140)
Q Consensus        22 qvI~K~t~-~~~~~~~~~~~s~~~~~~~~~~~~~~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~EC   88 (140)
                      =|||.+.+ .+++.|...              +....-..|..|.+.|.   |-  |    -|||..|
T Consensus        26 Y~iNs~kVVfLn~Rpq~~--------------~~~~~~~~C~~C~R~L~---d~--~----~fCSl~C   70 (72)
T PF04640_consen   26 YVINSAKVVFLNPRPQSR--------------PSKGSGNICETCHRSLQ---DP--Y----RFCSLSC   70 (72)
T ss_pred             EEeCCceEEEEccCCcCC--------------CCCCCCCccCCCCCCCC---CC--C----eEEeeeE
Confidence            38888864 455555111              11236678999999995   32  3    4999988

>PRK00418 DNA gyrase inhibitor; Reviewed

Probab=84.20  E-value=0.75  Score=31.90  Aligned_cols=34  Identities=29%  Similarity=0.589  Sum_probs=23.3

Q ss_pred             hccCccCCCCCCCCCceEEEcCCCcccChhhHHHHHHhhH
Q 032471           58 LQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDE   97 (140)
Q Consensus        58 L~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR~~qI~~DE   97 (140)
                      .-.|-.|+|... +.+-.-|   .+|||+.|+  .|++-+
T Consensus         6 ~v~CP~C~k~~~-w~~~~~~---rPFCS~RCk--~IDLg~   39 (62)
T PRK00418          6 TVNCPTCGKPVE-WGEISPF---RPFCSKRCQ--LIDLGE   39 (62)
T ss_pred             cccCCCCCCccc-ccCCCCc---CCcccHHHH--hhhHHH
Confidence            346999999873 3322333   489999998  666654

>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long

Probab=84.16  E-value=0.57  Score=29.25  Aligned_cols=28  Identities=32%  Similarity=0.757  Sum_probs=18.5

Q ss_pred             cCCCCCCCC--CceEEEcCCC-cccChhhHHH
Q 032471           63 LCKQTLLPG--KDIYMYKGDR-AFCSVECRCR   91 (140)
Q Consensus        63 ~CkK~L~~g--kDIyMYRGe~-AFCS~ECR~~   91 (140)
                      -|...| ++  ...+.|+|.. -|||.+|++.
T Consensus         5 vcg~~v-~~~~~~~~~y~G~~Y~FCS~~C~~~   35 (47)
T PF04945_consen    5 VCGMKV-PGNAAYSVEYNGRTYYFCSEGCKEK   35 (47)
T ss_dssp             GGG-BE------EEEEETTEEEEESSHHHHHH
T ss_pred             CCCCEE-ccCccEEEEECCEEEEEcCHHHHHH
Confidence            477777 44  4566888854 7999999953

It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....

>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc

Probab=83.54  E-value=0.33  Score=33.01  Aligned_cols=31  Identities=26%  Similarity=0.490  Sum_probs=16.9

Q ss_pred             cCccCCCCCCCCCceEEEcCCCcccChhhHHHHHHhh
Q 032471           60 HCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMD   96 (140)
Q Consensus        60 ~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR~~qI~~D   96 (140)
                      .|-.|+|.... .+-.   ...+|||+.||  .|.+-
T Consensus         4 ~CP~C~k~~~~-~~~n---~~rPFCS~RCk--~iDLg   34 (57)
T PF03884_consen    4 KCPICGKPVEW-SPEN---PFRPFCSERCK--LIDLG   34 (57)
T ss_dssp             E-TTT--EEE--SSSS---S--SSSSHHHH--HHHHS
T ss_pred             cCCCCCCeecc-cCCC---CcCCcccHhhc--ccCHH
Confidence            58889998743 2222   23699999999  56553

YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.

>smart00746 TRASH metallochaperone-like domain

Probab=80.11  E-value=2.5  Score=22.08  Aligned_cols=31  Identities=29%  Similarity=0.787  Sum_probs=19.4

Q ss_pred             CccCCCCCC-CCCc-eEEEcC-CCcccChhhHHH
Q 032471           61 CFLCKQTLL-PGKD-IYMYKG-DRAFCSVECRCR   91 (140)
Q Consensus        61 C~~CkK~L~-~gkD-IyMYRG-e~AFCS~ECR~~   91 (140)
                      |..|+..+. ++.. .+.+.| ..-|||.+|...
T Consensus         1 c~~C~~~~~~~~~~~~~~~~g~~~~FCs~~c~~~   34 (39)
T smart00746        1 CSFCGKDIYNPGTGIMVVNDGKVFYFCSSKCLSK   34 (39)
T ss_pred             CCCCCCCccCCCCceEEEECCEEEEEeCHHHHHH
Confidence            677888885 3322 223444 336999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	140
2das_A	62	Zinc finger MYM-type protein 5; trash domain, stru	90.01
2iyb_E	65	Testin, TESS, TES; LIM domain, SH3-binding, tumour	88.2
2l8e_A	49	Polyhomeotic-like protein 1; DNA binding protein;	87.85
1lv3_A	68	Hypothetical protein YACG; zinc finger, rubredoxin	84.84

>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17

Probab=90.01  E-value=0.21  Score=33.95  Aligned_cols=35  Identities=34%  Similarity=0.665  Sum_probs=29.8

Q ss_pred             hhhccCccCCCCCCCCCceEEEcCC-CcccChhhHH
Q 032471           56 TFLQHCFLCKQTLLPGKDIYMYKGD-RAFCSVECRC   90 (140)
Q Consensus        56 ~FL~~C~~CkK~L~~gkDIyMYRGe-~AFCS~ECR~   90 (140)
                      .+-..|..|||.|..|+--|-..|+ .-|||..|=.
T Consensus        18 ~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~   53 (62)
T 2das_A           18 PAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS   53 (62)
T ss_dssp             CSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH
T ss_pred             ccccChhhccchhhcCceeeeecCchhheechHHHc
Confidence            3567799999999999999988886 4699999953

>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}

Probab=88.20  E-value=0.28  Score=30.69  Aligned_cols=31  Identities=39%  Similarity=0.863  Sum_probs=23.7

Q ss_pred             hhhhccCccCCCCCCCCCceEEEcCCCcccChhhH
Q 032471           55 PTFLQHCFLCKQTLLPGKDIYMYKGDRAFCSVECR   89 (140)
Q Consensus        55 ~~FL~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR   89 (140)
                      ..|  .|..|++.|. + ..|.-++.+.||..+|-
T Consensus        31 ~CF--~C~~C~~~L~-~-~~f~~~~g~~yC~~~C~   61 (65)
T 2iyb_E           31 ECF--LCSCCSKCLI-G-QKFMPVEGMVFCSVECK   61 (65)
T ss_dssp             TTS--BCTTTCCBCT-T-SCCEEETTEEESSHHHH
T ss_pred             CCE--ECCCCCCcCC-C-CceEEECCEEecCHHHh
Confidence            345  6888999994 3 34667788999999995

>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}

Probab=87.85  E-value=0.12  Score=33.03  Aligned_cols=30  Identities=30%  Similarity=0.779  Sum_probs=23.7

Q ss_pred             hccCccCCCCCCCCCceEEEcCCCcccChhhHHH
Q 032471           58 LQHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCR   91 (140)
Q Consensus        58 L~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR~~   91 (140)
                      +..|-.|.+.|.+..    .+-.+-|||..||..
T Consensus        18 ~~~C~~CG~~i~~~~----~~r~krFCS~sCR~~   47 (49)
T 2l8e_A           18 LLKCEYCGKYAPAEQ----FRGSKRFCSMTCAKR   47 (49)
T ss_dssp             EEECTTTCCEEEGGG----CTTTSSSCSHHHHHH
T ss_pred             CCcChhccCcccccc----CCCCCccCCHHHHhh
Confidence            456999999986443    377889999999964

>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9

Probab=84.84  E-value=0.42  Score=32.67  Aligned_cols=33  Identities=33%  Similarity=0.622  Sum_probs=22.7

Q ss_pred             ccCccCCCCCCCCCceEEEcCCCcccChhhHHHHHHhhH
Q 032471           59 QHCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMDE   97 (140)
Q Consensus        59 ~~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR~~qI~~DE   97 (140)
                      ..|-.|+|... +..-   .-.++|||+.||  .|++-+
T Consensus        10 ~~CP~Cgkp~~-W~~~---~~~rPFCSeRCr--~iDLg~   42 (68)
T 1lv3_A           10 VNCPTCGKTVV-WGEI---SPFRPFCSKRCQ--LIDLGE   42 (68)
T ss_dssp             EECTTTCCEEE-CSSS---SSCCSSSSHHHH--HHHHSC
T ss_pred             CcCCCCCCccc-cccc---CCCCcccCHHHH--hhhHHH
Confidence            46999999873 2222   235799999999  566543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	140
d2dasa1	49	Zinc finger MYM-type protein 5 {Human (Homo sapien	87.63
d2cuqa1	32	Four and a half LIM domains 3, FHL3 {Human (Homo s	83.56
d2d8za2	32	Four and a half LIM domains protein 2, FHL2 {Human	83.3
d1lv3a_	65	Hypothetical zinc finger protein YacG {Escherichia	82.18

>d2dasa1 g.39.1.17 (A:8-56) Zinc finger MYM-type protein 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: TRASH domain
domain: Zinc finger MYM-type protein 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.63  E-value=0.18  Score=31.28  Aligned_cols=33  Identities=36%  Similarity=0.727  Sum_probs=28.1

Q ss_pred             hccCccCCCCCCCCCceEEEcCC-CcccChhhHH
Q 032471           58 LQHCFLCKQTLLPGKDIYMYKGD-RAFCSVECRC   90 (140)
Q Consensus        58 L~~C~~CkK~L~~gkDIyMYRGe-~AFCS~ECR~   90 (140)
                      --.|..|+|.|..|.--|-=+|- .-|||.-|-.
T Consensus        13 ~v~Ca~Ckk~lqKGQTAyqrkGs~~LFCSt~Cl~   46 (49)
T d2dasa1          13 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS   46 (49)
T ss_dssp             SCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH
T ss_pred             EeEecccchHHhccchHHhhCCCcceeEcchhhc
Confidence            45699999999999999988874 5799999954

>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains 3, FHL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.56  E-value=0.35  Score=27.60  Aligned_cols=23  Identities=17%  Similarity=0.615  Sum_probs=20.4

Q ss_pred             CccCCCCCCCCCceEEEcCCCcccC
Q 032471           61 CFLCKQTLLPGKDIYMYKGDRAFCS   85 (140)
Q Consensus        61 C~~CkK~L~~gkDIyMYRGe~AFCS   85 (140)
                      |-.|++.|.  .+.|.-|+|+++|-
T Consensus         2 Ct~Ck~~La--GqrFTSrde~pYC~   24 (32)
T d2cuqa1           2 CTGCQTPLA--GQQFTSRDEDPYCV   24 (32)
T ss_dssp             CSSSCCBCT--TCCEEECSSSEEEH
T ss_pred             ccccCcccc--CCccccCCCCccHH
Confidence            889999995  67899999999994

>d2d8za2 g.39.1.3 (A:33-64) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Four and a half LIM domains protein 2, FHL2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.30  E-value=0.32  Score=27.74  Aligned_cols=24  Identities=25%  Similarity=0.620  Sum_probs=20.9

Q ss_pred             cCccCCCCCCCCCceEEEcCCCcccC
Q 032471           60 HCFLCKQTLLPGKDIYMYKGDRAFCS   85 (140)
Q Consensus        60 ~C~~CkK~L~~gkDIyMYRGe~AFCS   85 (140)
                      .|..|++.|.  .+.|+-|-+++||-
T Consensus         1 ~C~~C~~~L~--GQry~~rd~~PyC~   24 (32)
T d2d8za2           1 VCTACRKQLS--GQRFTARDDFAYCL   24 (32)
T ss_dssp             BCSSSCCBCT--TSCCEESSSSEECH
T ss_pred             CcccCCcccc--CceeeecCCCeehH
Confidence            3899999994  67899999999994

>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Hypothetical zinc finger protein YacG
domain: Hypothetical zinc finger protein YacG
species: Escherichia coli [TaxId: 562]

Probab=82.18  E-value=0.14  Score=32.93  Aligned_cols=31  Identities=32%  Similarity=0.609  Sum_probs=21.0

Q ss_pred             cCccCCCCCCCCCceEEEcCCCcccChhhHHHHHHhh
Q 032471           60 HCFLCKQTLLPGKDIYMYKGDRAFCSVECRCRQIFMD   96 (140)
Q Consensus        60 ~C~~CkK~L~~gkDIyMYRGe~AFCS~ECR~~qI~~D   96 (140)
                      .|-.|+|... +.+-.-   ..+|||+-|+  +|.+-
T Consensus         8 ~CP~C~k~~~-w~~~~~---~rPFCS~RCk--~IDLg   38 (65)
T d1lv3a_           8 NCPTCGKTVV-WGEISP---FRPFCSKRCQ--LIDLG   38 (65)
T ss_dssp             ECTTTCCEEE-CSSSSS---CCSSSSHHHH--HHHHS
T ss_pred             eCCCCCCccc-cCCCCC---cCCchhHhhh--hccHH
Confidence            5999999763 222111   3699999998  66664