Citrus Sinensis ID: 032472

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MDSLVGFRFKPTNEEIISLLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYCERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTEWVMHEISVGDDPLYKV
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHcccccccccEEEEEcccccccccccccccccccccEEEEccccccccccccccccccccccccccccccEEccccccEEEEEEccccccccccccccccccEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHcccccccEEEEEEEcccccccccccHccccccccEEEEEcccccccccccccccccccccEEEcccccEEEcccccEEEEEEEEEEEEccccccccccccEEEEEEEccccccccc
Coil and Loop (DISEMBL)
mdslvgfrfkptNEEIISLLKkkrldpdfsvhtikeidfysfdpwdlprhseiqceEKVWYFYCERYYKSAkskqahrrtksgywkvtgkgsdikrknstevigtkkilpfcprrsaskkakTEWVMHEisvgddplykv
Flexible Loop (DISEMBL)
mdslvgfrfkptnEEIISllkkkrldpdfSVHTIKEIDfysfdpwdlprhSEIQCEEKVWYFYCERYYKsakskqahrrtksgywkvtgkgsdikrknstevigtkkilpfcprrsaskkaktewvmheisvgddplykv
Low Complexity Region (SEG)
MDSLVGFRFKPTNEEIISLLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYCERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTEWVMHEISVGDDPLYKV
Disordered region (IsUnstruct)
*****GFRFKPTNEEIISLLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYCERYYKS************GYWKVT************EVIGTKKILPFCP***********WVMH************
Disordered Region (DISOPRED)
MDSLVGFRFKPTNEEIISLLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYCERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTEWVMHEI**********
Disordered Region (DISEMBL)
MDSLVGFRFKPTNEEIISLLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYCERYYKS************GYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRR********EWVMHEISVGDDPLYKV
Disordered Region (DISPRO)
*DSLVGFRFKPTNEEIISLLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYCERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTEWVMHEISVGDD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSLVGFRFKPTNEEIISLLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYCERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTEWVMHEISVGDDPLYKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	140	2.2.26 [Sep-21-2011]
Q9FIW5	337	Putative NAC domain-conta	yes	no	0.885	0.367	0.460	3e-23
Q94F58	340	NAC domain-containing pro	no	no	0.878	0.361	0.437	1e-22
Q9ZVH0	418	Protein FEZ OS=Arabidopsi	no	no	0.885	0.296	0.437	4e-22
O81913	359	NAC domain-containing pro	no	no	0.892	0.348	0.443	6e-22
Q9FLJ2	336	NAC domain-containing pro	no	no	0.885	0.369	0.461	1e-21
O81914	362	NAC domain-containing pro	no	no	0.892	0.345	0.421	2e-21
Q8H4S4	425	NAC transcription factor	no	no	0.9	0.296	0.427	2e-20
Q9FRV4	310	Protein CUP-SHAPED COTYLE	no	no	0.864	0.390	0.432	6e-20
A2YMR0	425	NAC transcription factor	N/A	no	0.9	0.296	0.419	6e-20
Q9SK55	275	Transcription factor JUNG	no	no	0.885	0.450	0.423	2e-19

>sp|Q9FIW5|NAC94_ARATH Putative NAC domain-containing protein 94 OS=Arabidopsis thaliana GN=ANAC094 PE=4 SV=1

 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/128 (46%), Positives = 76/128 (59%), Gaps = 4/128 (3%)

Query: 4   LVGFRFKPTNEEIISL-LKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYF 62
           L GFRF PT+EE++S  LK+K L        IK++D Y +DPWDLP+ + +   EK WYF
Sbjct: 21  LPGFRFHPTDEELVSFYLKRKVLHKSLPFDLIKKVDIYKYDPWDLPKLAAMG--EKEWYF 78

Query: 63  YCERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAK 122
           YC R  K   S + +R T  G+WK TG    I   +ST  IG KK L F  R  A+K  K
Sbjct: 79  YCPRDRKYRNSTRPNRVTGGGFWKATGTDRPIYSLDSTRCIGLKKSLVFY-RGRAAKGVK 137

Query: 123 TEWVMHEI 130
           T+W+MHE 
Sbjct: 138 TDWMMHEF 145

Arabidopsis thaliana (taxid: 3702)

>sp|Q94F58|NAC89_ARATH NAC domain-containing protein 89 OS=Arabidopsis thaliana GN=NAC089 PE=1 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/128 (43%), Positives = 81/128 (63%), Gaps = 5/128 (3%)

Query: 6   GFRFKPTNEEIISLLKKKRLDP-DFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYC 64
           GF+F PT+ E+IS   K+++D  + SV  I +++ Y+F+PWDLP  S ++ + + W+F+C
Sbjct: 24  GFKFSPTDVELISYYLKRKMDGLERSVEVIPDLEIYNFEPWDLPDKSIVKSDSE-WFFFC 82

Query: 65  ERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTE 124
            R  K     Q  R TK GYWK TGK  D+  K+ +EVIGTK+ L F   R A K  +T+
Sbjct: 83  ARGKKYPHGSQNRRATKMGYWKATGKERDV--KSGSEVIGTKRTLVFHIGR-APKGERTD 139

Query: 125 WVMHEISV 132
           W+MHE  V
Sbjct: 140 WIMHEYCV 147

Transcription factor involved in plant cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVH0|FEZ_ARATH Protein FEZ OS=Arabidopsis thaliana GN=FEZ PE=2 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/128 (43%), Positives = 75/128 (58%), Gaps = 4/128 (3%)

Query: 4   LVGFRFKPTNEEIISL-LKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYF 62
           L GFRF PT+EE++S  LK+K      S+  I+++D Y +DPWDLP+ +     EK WYF
Sbjct: 17  LPGFRFHPTDEELVSFYLKRKVQHNPLSIELIRQLDIYKYDPWDLPKFA--MTGEKEWYF 74

Query: 63  YCERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAK 122
           YC R  K   S + +R T +G+WK TG    I      + IG KK L F   R A+K  K
Sbjct: 75  YCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYSSEGNKCIGLKKSLVFYKGR-AAKGVK 133

Query: 123 TEWVMHEI 130
           T+W+MHE 
Sbjct: 134 TDWMMHEF 141

Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane.

Arabidopsis thaliana (taxid: 3702)

>sp|O81913|NAC4_ARATH NAC domain-containing protein 4 OS=Arabidopsis thaliana GN=NAC004 PE=2 SV=2

 Score =  102 bits (255), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 59/133 (44%), Positives = 77/133 (57%), Gaps = 8/133 (6%)

Query: 1   MDSLVGFRFKPTNEEIIS-LLKKKRLDPDFSV--HTIKEIDFYSFDPWDLPRHSEIQCEE 57
           M + VGFRF+P +EEI+   L+ K LD D S     I  +D  SF+PWDLP  S I+  +
Sbjct: 1   MMNPVGFRFRPNDEEIVDHYLRPKNLDSDTSHVDEVISTVDICSFEPWDLPSKSMIKSRD 60

Query: 58  KVWYFYCERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNST-EVIGTKKILPFCPRRS 116
            VWYF+  +  K  +  Q  RRT SG+WK TGK   + RK    E IG K++L F  R  
Sbjct: 61  GVWYFFSVKEMKYNRGDQQRRRTNSGFWKKTGKTMTVMRKRGNREKIGEKRVLVFKNRDG 120

Query: 117 ASKKAKTEWVMHE 129
               +KT+WVMHE
Sbjct: 121 ----SKTDWVMHE 129

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/130 (46%), Positives = 77/130 (59%), Gaps = 6/130 (4%)

Query: 1   MDSLVGFRFKPTNEEIIS-LLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKV 59
           MD   GFRF PT+EE+I+  L KK LD  FS   I E+D    +PW+LP  +++   EK 
Sbjct: 14  MDLPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELPWMAKMG--EKE 71

Query: 60  WYFYCERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASK 119
           WYF+C R  K     + +R T++GYWK TGK  +I R  S  ++G KK L F  R  A K
Sbjct: 72  WYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKS--LVGMKKTLVFY-RGRAPK 128

Query: 120 KAKTEWVMHE 129
             KT WVMHE
Sbjct: 129 GQKTNWVMHE 138

Arabidopsis thaliana (taxid: 3702)

>sp|O81914|NAC5_ARATH NAC domain-containing protein 5 OS=Arabidopsis thaliana GN=NAC005 PE=2 SV=2

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 79/133 (59%), Gaps = 8/133 (6%)

Query: 1   MDSLVGFRFKPTNEEIISL-LKKKRLDPDFS--VHTIKEIDFYSFDPWDLPRHSEIQCEE 57
           M + VGFRF+PT+ EI+ + L+ K L+ + S     I  +D  SFDPWDLP HS ++  +
Sbjct: 1   MANPVGFRFRPTDGEIVDIYLRPKNLESNTSHVDEVISTVDICSFDPWDLPSHSRMKTRD 60

Query: 58  KVWYFYCERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNST-EVIGTKKILPFCPRRS 116
           +VWYF+  +  K  K  +  R+TKSG+WK TG   DI RK    E IG K++L F     
Sbjct: 61  QVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEKRVLVF----K 116

Query: 117 ASKKAKTEWVMHE 129
               +K++W MHE
Sbjct: 117 NHGGSKSDWAMHE 129

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H4S4|NAC10_ORYSJ NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 56/131 (42%), Positives = 68/131 (51%), Gaps = 5/131 (3%)

Query: 6   GFRFKPTNEE-IISLLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYC 64
           GFRF PT+EE ++  LKKK       V  I E+D Y FDPWDLP  +     E+ WYF+ 
Sbjct: 32  GFRFHPTDEELVVHYLKKKAASVPLPVTIIAEVDLYKFDPWDLPEKANFG--EQEWYFFS 89

Query: 65  ERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNST-EVIGTKKILPFCPRRSASKKAKT 123
            R  K     + +R   SGYWK TG    I    ST E +G KK L F  R    K  KT
Sbjct: 90  PRDRKYPNGARPNRAATSGYWKATGTDKPIMSSGSTREKVGVKKALVFY-RGKPPKGVKT 148

Query: 124 EWVMHEISVGD 134
            W+MHE  + D
Sbjct: 149 NWIMHEYRLTD 159

Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FRV4|NAC54_ARATH Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana GN=NAC054 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 54/125 (43%), Positives = 75/125 (60%), Gaps = 4/125 (3%)

Query: 6   GFRFKPTNEEIISL-LKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYC 64
           GFRF PT+EE+I+  L KK LD +FS   I ++D    +PW+LP  +++   EK WYF+ 
Sbjct: 23  GFRFHPTDEELITYYLLKKVLDSNFSCAAISQVDLNKSEPWELPEKAKMG--EKEWYFFT 80

Query: 65  ERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTE 124
            R  K     + +R T++GYWK TGK  +IK   +  ++G KK L F   R A K  K+ 
Sbjct: 81  LRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVFYKGR-APKGEKSC 139

Query: 125 WVMHE 129
           WVMHE
Sbjct: 140 WVMHE 144

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|A2YMR0|NAC10_ORYSI NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1

 Score = 95.9 bits (237), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 55/131 (41%), Positives = 68/131 (51%), Gaps = 5/131 (3%)

Query: 6   GFRFKPTNEE-IISLLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYC 64
           GFRF PT+EE ++  LKKK       V  I E+D Y FDPW+LP  +     E+ WYF+ 
Sbjct: 32  GFRFHPTDEELVVHYLKKKAASVPLPVTIIAEVDLYKFDPWELPEKANFG--EQEWYFFS 89

Query: 65  ERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNST-EVIGTKKILPFCPRRSASKKAKT 123
            R  K     + +R   SGYWK TG    I    ST E +G KK L F  R    K  KT
Sbjct: 90  PRDRKYPNGARPNRAATSGYWKATGTDKPIMASGSTREKVGVKKALVFY-RGKPPKGVKT 148

Query: 124 EWVMHEISVGD 134
            W+MHE  + D
Sbjct: 149 NWIMHEYRLTD 159

Transcription factor of the NAC family associated with male fertility.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9SK55|NAC42_ARATH Transcription factor JUNGBRUNNEN 1 OS=Arabidopsis thaliana GN=JUB1 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/130 (42%), Positives = 77/130 (59%), Gaps = 6/130 (4%)

Query: 4   LVGFRFKPTNEEIISL-LKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYF 62
           L GFRF PT+EE++   L++K  +    +  IK+ID Y +DPWDLPR S +   EK WYF
Sbjct: 19  LPGFRFHPTDEELLGYYLRRKVENKTIKLELIKQIDIYKYDPWDLPRVSSVG--EKEWYF 76

Query: 63  YCERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAK 122
           +C R  K   S + +R T SG+WK T  G D    ++ + +G KK L +    SA K  K
Sbjct: 77  FCMRGRKYRNSVRPNRVTGSGFWKAT--GIDKPVYSNLDCVGLKKSLVYY-LGSAGKGTK 133

Query: 123 TEWVMHEISV 132
           T+W+MHE  +
Sbjct: 134 TDWMMHEFRL 143

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
356522462	497	PREDICTED: NAC domain-containing protein	0.885	0.249	0.468	2e-23
242067287	397	hypothetical protein SORBIDRAFT_05g00159	0.871	0.307	0.460	2e-22
356560207	1061	PREDICTED: uncharacterized protein LOC10	0.885	0.116	0.468	2e-22
242079615	670	hypothetical protein SORBIDRAFT_07g02390	0.907	0.189	0.431	2e-22
358346559	400	NAC domain protein [Medicago truncatula]	0.9	0.315	0.461	6e-22
296089037	335	unnamed protein product [Vitis vinifera]	0.885	0.370	0.444	7e-22
224061527	537	NAC domain protein, IPR003441 [Populus t	0.914	0.238	0.455	8e-22
225453680	560	PREDICTED: uncharacterized protein LOC10	0.885	0.221	0.444	9e-22
224145744	165	NAC domain protein, IPR003441 [Populus t	0.928	0.787	0.466	1e-21
357497429	379	NAC domain protein [Medicago truncatula]	0.921	0.340	0.428	1e-21

>gi|356522462|ref|XP_003529865.1| PREDICTED: NAC domain-containing protein 69-like [Glycine max]

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/126 (46%), Positives = 79/126 (62%), Gaps = 2/126 (1%)

Query: 5   VGFRFKPTNEEIISL-LKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFY 63
           VGFRF+PT+EE+++  LK K L  DF VH I EID    +PWD+P  S I+ ++  W+F+
Sbjct: 14  VGFRFRPTDEELVNYYLKHKLLADDFPVHIIPEIDLCKVEPWDVPERSVIKSDDPEWFFF 73

Query: 64  CERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKT 123
               YK  KSK+ +R TK GYWK TG   ++K   ++ VIGTKK L F   R   +  KT
Sbjct: 74  SPVDYKYLKSKRFNRTTKRGYWKTTGNDRNVKIPGTSNVIGTKKTLVFHEGR-GPRGVKT 132

Query: 124 EWVMHE 129
            WV+HE
Sbjct: 133 NWVIHE 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242067287|ref|XP_002448920.1| hypothetical protein SORBIDRAFT_05g001590 [Sorghum bicolor] gi|241934763|gb|EES07908.1| hypothetical protein SORBIDRAFT_05g001590 [Sorghum bicolor]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/126 (46%), Positives = 76/126 (60%), Gaps = 4/126 (3%)

Query: 6   GFRFKPTNEEII-SLLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYC 64
           GFRF PT+EE+I S L +K L+P F+ H I E+D    +PWDLP  S+    EK WYF+C
Sbjct: 19  GFRFHPTDEEVITSYLLQKFLNPSFAPHAIGEVDLNKCEPWDLP--SKANMGEKEWYFFC 76

Query: 65  ERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTE 124
            +  K     + +R TK GYWK TGK  +I ++   E++G KK L F   R A +  KT 
Sbjct: 77  HKDMKYPTGTRTNRATKEGYWKATGKDREIFKQPGRELVGMKKTLVFYMGR-APRGTKTN 135

Query: 125 WVMHEI 130
           WVMHE 
Sbjct: 136 WVMHEF 141

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560207|ref|XP_003548385.1| PREDICTED: uncharacterized protein LOC100778755 [Glycine max]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 59/126 (46%), Positives = 78/126 (61%), Gaps = 2/126 (1%)

Query: 5   VGFRFKPTNEEIISL-LKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFY 63
           VGFRF+PT+EE++   LK K L  DF VH I EID    +PWD+P  S I+ ++  W+F+
Sbjct: 13  VGFRFRPTDEELVDYYLKHKLLADDFPVHIIPEIDLCKVEPWDVPGRSVIKSDDPEWFFF 72

Query: 64  CERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKT 123
               YK  KSK+ +R TK G+WK TG    I+   ++ VIGTKK L F   R   + AKT
Sbjct: 73  SPVDYKYLKSKRFNRTTKRGFWKATGNDRKIRIPGTSNVIGTKKTLVFHQGR-VPRGAKT 131

Query: 124 EWVMHE 129
            WV+HE
Sbjct: 132 NWVIHE 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242079615|ref|XP_002444576.1| hypothetical protein SORBIDRAFT_07g023900 [Sorghum bicolor] gi|241940926|gb|EES14071.1| hypothetical protein SORBIDRAFT_07g023900 [Sorghum bicolor]

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/132 (43%), Positives = 76/132 (57%), Gaps = 5/132 (3%)

Query: 6   GFRFKPTNEEIISL-LKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYC 64
           GFRF PT+EE++S  LK+K L     V  I E+D Y  +PWDLP  S ++  +  WYF+ 
Sbjct: 35  GFRFHPTDEELVSYYLKRKVLGRPLKVDAIAEVDLYKVEPWDLPARSRLRSRDSQWYFFS 94

Query: 65  ERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTE 124
               K A   + +R T SGYWK TGK  ++  ++   V+G KK L F   R A K  +T 
Sbjct: 95  RLDRKHANRARTNRATSSGYWKTTGKDREV--RHGPRVVGMKKTLVFHAGR-APKGERTN 151

Query: 125 WVMHEISV-GDD 135
           WVMHE  + GDD
Sbjct: 152 WVMHEYRLEGDD 163

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346559|ref|XP_003637334.1| NAC domain protein [Medicago truncatula] gi|358346862|ref|XP_003637483.1| NAC domain protein [Medicago truncatula] gi|355503269|gb|AES84472.1| NAC domain protein [Medicago truncatula] gi|355503418|gb|AES84621.1| NAC domain protein [Medicago truncatula]

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/130 (46%), Positives = 79/130 (60%), Gaps = 4/130 (3%)

Query: 2   DSLVGFRFKPTNEEIIS-LLKKKRLDPDFSVHT-IKEIDFYSFDPWDLPRHSEIQCEEKV 59
           D  VGFRF+PT+EE+++  LKKK L  D  V+  I E+D   F+PWDLP  S I+  +  
Sbjct: 10  DVPVGFRFRPTDEELVNHYLKKKLLGNDSIVNNVIAEVDVCKFEPWDLPACSLIKSNDPE 69

Query: 60  WYFYCERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASK 119
           W+F+C R YK A SK+ +RRT+ GYWK TG    IK + +  VIG KK L F        
Sbjct: 70  WFFFCPRDYKYANSKRFNRRTQCGYWKATGLDRKIKVRGTDNVIGIKKTLVF--YNGCVP 127

Query: 120 KAKTEWVMHE 129
             K+ WV+HE
Sbjct: 128 GVKSNWVIHE 137

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089037|emb|CBI38740.3| unnamed protein product [Vitis vinifera]

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/126 (44%), Positives = 79/126 (62%), Gaps = 2/126 (1%)

Query: 5   VGFRFKPTNEEIIS-LLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFY 63
           VGFRF PT+EE++   LK K L  +  V  I E+D   ++PWDLP  S IQ  +  W+F+
Sbjct: 8   VGFRFHPTDEELVDHYLKLKILGMNSHVDIIPEVDVCKWEPWDLPVLSVIQTNDPEWFFF 67

Query: 64  CERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKT 123
           C   YK    ++++R T++GYWK TGK  +IK + + E++GTKK L F  R  A +  +T
Sbjct: 68  CPPDYKYPTGRRSNRATEAGYWKPTGKDRNIKSRATKELLGTKKTLVFY-RGRAPQSVRT 126

Query: 124 EWVMHE 129
            WVMHE
Sbjct: 127 NWVMHE 132

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061527|ref|XP_002300524.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222847782|gb|EEE85329.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 61/134 (45%), Positives = 81/134 (60%), Gaps = 6/134 (4%)

Query: 1   MDSL-VGFRFKPTNEEIIS-LLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEK 58
           MDSL +GFRF+PT+EE+IS  L+ K    D  V  I EID   ++PWDLP  S I+ ++ 
Sbjct: 5   MDSLPLGFRFRPTDEELISHYLRLKINGRDSEVEVIPEIDVCKWEPWDLPGQSVIKTDDP 64

Query: 59  VWYFYCERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNS---TEVIGTKKILPFCPRR 115
            W+F+C R  K     +++R T +GYWK TGK   IK + S   T +IG KK L F  R 
Sbjct: 65  EWFFFCPRDRKYPNGHRSNRATDAGYWKATGKDRTIKSRKSAGNTTLIGMKKTLVFY-RG 123

Query: 116 SASKKAKTEWVMHE 129
            A K  +T W+MHE
Sbjct: 124 RAPKGKRTNWIMHE 137

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453680|ref|XP_002268892.1| PREDICTED: uncharacterized protein LOC100252386 [Vitis vinifera]

 Score =  108 bits (269), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 56/126 (44%), Positives = 79/126 (62%), Gaps = 2/126 (1%)

Query: 5   VGFRFKPTNEEIIS-LLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFY 63
           VGFRF PT+EE++   LK K L  +  V  I E+D   ++PWDLP  S IQ  +  W+F+
Sbjct: 16  VGFRFHPTDEELVDHYLKLKILGMNSHVDIIPEVDVCKWEPWDLPVLSVIQTNDPEWFFF 75

Query: 64  CERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKT 123
           C   YK    ++++R T++GYWK TGK  +IK + + E++GTKK L F  R  A +  +T
Sbjct: 76  CPPDYKYPTGRRSNRATEAGYWKPTGKDRNIKSRATKELLGTKKTLVFY-RGRAPQSVRT 134

Query: 124 EWVMHE 129
            WVMHE
Sbjct: 135 NWVMHE 140

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145744|ref|XP_002336258.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222833042|gb|EEE71519.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 81/135 (60%), Gaps = 5/135 (3%)

Query: 5   VGFRFKPTNEEIISLLKKKRLDPDFSV--HTIKEID-FYSFDPWDLPRHSEIQCEEKVWY 61
           VG+RF PT EEII      +L+   S+    I EID  Y +DPWDLP  + IQ  ++VWY
Sbjct: 4   VGYRFHPTEEEIIDHYLSCKLNGLDSLVDAYIGEIDHLYQWDPWDLPDFAVIQSNDRVWY 63

Query: 62  FYCERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKA 121
           F+C   YK   SK+ +R TK+G WK+TGK  +I R+ + EVIGTKK L F  +   SK  
Sbjct: 64  FFCRHDYKFPNSKRVNRTTKNGNWKLTGKVRNITRRGTNEVIGTKKNLVFLHKCPDSK-- 121

Query: 122 KTEWVMHEISVGDDP 136
           KT WV+HE      P
Sbjct: 122 KTRWVIHEFQAKTPP 136

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357497429|ref|XP_003619003.1| NAC domain protein [Medicago truncatula] gi|355494018|gb|AES75221.1| NAC domain protein [Medicago truncatula]

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/133 (42%), Positives = 81/133 (60%), Gaps = 4/133 (3%)

Query: 1   MDSLVGFRFKPTNEEIISL-LKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKV 59
           +D   GFRF P ++EII+  L KK L+ +FS   I E D    +PWDLP+ ++++  EK 
Sbjct: 16  LDLPAGFRFHPNDDEIITFYLLKKVLNSNFSAIAIGEADLNRCEPWDLPKKAKMR--EKE 73

Query: 60  WYFYCERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASK 119
           WYF+C+R  K     + +R T+SGYWK TGK  +I +  S +++G KK L F   R A +
Sbjct: 74  WYFFCQRDRKYPTGTRTNRATESGYWKATGKDKEIYKGKSNQLVGMKKTLVFYKGR-APR 132

Query: 120 KAKTEWVMHEISV 132
             KT WVMHE  +
Sbjct: 133 GEKTNWVMHEFRL 145

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
TAIR|locus:2039600	335	NTL8 "NTM1-like 8" [Arabidopsi	0.907	0.379	0.416	1.6e-24
TAIR|locus:2176362	340	NAC089 "NAC domain containing	0.878	0.361	0.437	2e-24
TAIR|locus:2095730	335	NAC060 "NAC domain containing	0.857	0.358	0.448	5.3e-24
TAIR|locus:2202820	418	FEZ "FEZ" [Arabidopsis thalian	0.878	0.294	0.440	9.4e-24
TAIR|locus:2204783	359	NAC004 "NAC domain containing	0.864	0.337	0.457	2.3e-23
TAIR|locus:2172334	335	ANAC087 "Arabidopsis NAC domai	0.857	0.358	0.44	2.6e-23
TAIR|locus:2160324	329	NAC080 "NAC domain containing	0.885	0.376	0.469	2.9e-23
TAIR|locus:2163153	336	NAC100 "NAC domain containing	0.885	0.369	0.461	3.8e-23
TAIR|locus:2142285	292	NAC096 "NAC domain containing	0.914	0.438	0.404	1.6e-22
TAIR|locus:2154684	375	CUC2 "CUP-SHAPED COTYLEDON 2"	0.864	0.322	0.424	3.7e-22

TAIR|locus:2039600 NTL8 "NTM1-like 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 55/132 (41%), Positives = 81/132 (61%)

Query:     6 GFRFKPTNEEIISLLKKKRLDPDF-SVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYC 64
             GFRF PT+ E+IS   ++++D D  SV  I E++ Y F+PWDLP  S+++ E + W+++C
Sbjct:    17 GFRFSPTDVELISYYLRRKIDGDENSVAVIAEVEIYKFEPWDLPEESKLKSENE-WFYFC 75

Query:    65 ERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTE 124
              R  K     Q+ R T+ GYWK TGK   +K  N  +V+GTK+ L F   R A +  +TE
Sbjct:    76 ARGRKYPHGSQSRRATQLGYWKATGKERSVKSGN--QVVGTKRTLVFHIGR-APRGERTE 132

Query:   125 WVMHEISVGDDP 136
             W+MHE  +   P
Sbjct:   133 WIMHEYCIHGAP 144

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0009845 "seed germination" evidence=RCA;IMP

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

TAIR|locus:2176362 NAC089 "NAC domain containing protein 89" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 56/128 (43%), Positives = 81/128 (63%)

Query:     6 GFRFKPTNEEIISLLKKKRLDP-DFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYC 64
             GF+F PT+ E+IS   K+++D  + SV  I +++ Y+F+PWDLP  S ++ + + W+F+C
Sbjct:    24 GFKFSPTDVELISYYLKRKMDGLERSVEVIPDLEIYNFEPWDLPDKSIVKSDSE-WFFFC 82

Query:    65 ERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTE 124
              R  K     Q  R TK GYWK TGK  D+K  + +EVIGTK+ L F   R A K  +T+
Sbjct:    83 ARGKKYPHGSQNRRATKMGYWKATGKERDVK--SGSEVIGTKRTLVFHIGR-APKGERTD 139

Query:   125 WVMHEISV 132
             W+MHE  V
Sbjct:   140 WIMHEYCV 147

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2095730 NAC060 "NAC domain containing protein 60" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 56/125 (44%), Positives = 80/125 (64%)

Query:     6 GFRFKPTNEEIISLLKKKRLDP-DFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYC 64
             GF+F PT+ E+IS   K+++D  + SV  I E++ Y+F+PWDLP  S ++ + + W+F+C
Sbjct:    17 GFKFSPTDIELISYYLKRKMDGLERSVEIIPEVEIYNFEPWDLPDKSIVKSDSE-WFFFC 75

Query:    65 ERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTE 124
              R  K     Q  R TK GYWK TGK  ++K  + +EVIGTK+ L F   R A K  +TE
Sbjct:    76 ARGKKYPHGSQNRRATKIGYWKATGKERNVK--SGSEVIGTKRTLVFHIGR-APKGGRTE 132

Query:   125 WVMHE 129
             W+MHE
Sbjct:   133 WLMHE 137

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2202820 FEZ "FEZ" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 9.4e-24, P = 9.4e-24
 Identities = 56/127 (44%), Positives = 75/127 (59%)

Query:     4 LVGFRFKPTNEEIISL-LKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYF 62
             L GFRF PT+EE++S  LK+K      S+  I+++D Y +DPWDLP+ +     EK WYF
Sbjct:    17 LPGFRFHPTDEELVSFYLKRKVQHNPLSIELIRQLDIYKYDPWDLPKFA--MTGEKEWYF 74

Query:    63 YCERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAK 122
             YC R  K   S + +R T +G+WK TG    I      + IG KK L F   R+A K  K
Sbjct:    75 YCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYSSEGNKCIGLKKSLVFYKGRAA-KGVK 133

Query:   123 TEWVMHE 129
             T+W+MHE
Sbjct:   134 TDWMMHE 140

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0045770 "positive regulation of asymmetric cell division" evidence=IMP

GO:0048103 "somatic stem cell division" evidence=IMP

GO:0048829 "root cap development" evidence=IMP

TAIR|locus:2204783 NAC004 "NAC domain containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 59/129 (45%), Positives = 75/129 (58%)

Query:     5 VGFRFKPTNEEIIS-LLKKKRLDPDFSV--HTIKEIDFYSFDPWDLPRHSEIQCEEKVWY 61
             VGFRF+P +EEI+   L+ K LD D S     I  +D  SF+PWDLP  S I+  + VWY
Sbjct:     5 VGFRFRPNDEEIVDHYLRPKNLDSDTSHVDEVISTVDICSFEPWDLPSKSMIKSRDGVWY 64

Query:    62 FYCERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNST-EVIGTKKILPFCPRRSASKK 120
             F+  +  K  +  Q  RRT SG+WK TGK   + RK    E IG K++L F   R  SK 
Sbjct:    65 FFSVKEMKYNRGDQQRRRTNSGFWKKTGKTMTVMRKRGNREKIGEKRVLVF-KNRDGSK- 122

Query:   121 AKTEWVMHE 129
               T+WVMHE
Sbjct:   123 --TDWVMHE 129

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2172334 ANAC087 "Arabidopsis NAC domain containing protein 87" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
 Identities = 55/125 (44%), Positives = 76/125 (60%)

Query:     6 GFRFKPTNEEIISL-LKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYC 64
             GFRF PT+EEII+  LK+K L+  F+   + E D    +PWDLP+ +++   EK +YF+C
Sbjct:    24 GFRFHPTDEEIITCYLKEKVLNSRFTAVAMGEADLNKCEPWDLPKRAKMG--EKEFYFFC 81

Query:    65 ERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTE 124
             +R  K     + +R T+SGYWK TGK  +I +     ++G KK L F  R  A K  KT 
Sbjct:    82 QRDRKYPTGMRTNRATESGYWKATGKDKEIFKGKGC-LVGMKKTLVFY-RGRAPKGEKTN 139

Query:   125 WVMHE 129
             WVMHE
Sbjct:   140 WVMHE 144

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2160324 NAC080 "NAC domain containing protein 80" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 61/130 (46%), Positives = 77/130 (59%)

Query:     1 MDSLVGFRFKPTNEEIIS-LLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKV 59
             MD   GFRF PT+EE+I+  L KK LD  FS   I E+D    +PW+LP  ++I   EK 
Sbjct:    15 MDLPPGFRFHPTDEELITHYLHKKVLDLGFSAKAIGEVDLNKAEPWELPYKAKIG--EKE 72

Query:    60 WYFYCERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASK 119
             WYF+C R  K     + +R T++GYWK TGK  +I R  S  ++G KK L F  R  A K
Sbjct:    73 WYFFCVRDRKYPTGLRTNRATQAGYWKATGKDKEIFRGKS--LVGMKKTLVFY-RGRAPK 129

Query:   120 KAKTEWVMHE 129
               KT WVMHE
Sbjct:   130 GQKTNWVMHE 139

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2163153 NAC100 "NAC domain containing protein 100" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 60/130 (46%), Positives = 77/130 (59%)

Query:     1 MDSLVGFRFKPTNEEIIS-LLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKV 59
             MD   GFRF PT+EE+I+  L KK LD  FS   I E+D    +PW+LP  +++   EK 
Sbjct:    14 MDLPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELPWMAKMG--EKE 71

Query:    60 WYFYCERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASK 119
             WYF+C R  K     + +R T++GYWK TGK  +I R  S  ++G KK L F  R  A K
Sbjct:    72 WYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKS--LVGMKKTLVFY-RGRAPK 128

Query:   120 KAKTEWVMHE 129
               KT WVMHE
Sbjct:   129 GQKTNWVMHE 138

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2142285 NAC096 "NAC domain containing protein 96" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 53/131 (40%), Positives = 77/131 (58%)

Query:     6 GFRFKPTNEEIISLLKKKRLDP-DFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYC 64
             GFRF PT+EE+I    K++++  +  +  I  ID YSFDPW+LP  S +   +  WYF+C
Sbjct:     9 GFRFHPTDEELIEYYLKRKVEGLEIELEVIPVIDLYSFDPWELPDKSFLPNRDMEWYFFC 68

Query:    65 ERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTE 124
              R  K     + +R TK+GYWK TGK   I  ++S+ +IG +K L F   R A    ++ 
Sbjct:    69 SRDKKYPNGFRTNRGTKAGYWKATGKDRKITSRSSS-IIGYRKTLVFYKGR-APLGDRSN 126

Query:   125 WVMHEISVGDD 135
             W+MHE  + DD
Sbjct:   127 WIMHEYRLCDD 137

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2154684 CUC2 "CUP-SHAPED COTYLEDON 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
 Identities = 53/125 (42%), Positives = 72/125 (57%)

Query:     6 GFRFKPTNEEIIS-LLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYC 64
             GFRF PT+EE+I+  L +K LD  FS   I E+D    +PW LP  +++   EK WYF+ 
Sbjct:    20 GFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLPGRAKMG--EKEWYFFS 77

Query:    65 ERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTE 124
              R  K     + +R T++GYWK TGK  +I    +  ++G KK L F   R A K  K+ 
Sbjct:    78 LRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVFYKGR-APKGEKSN 136

Query:   125 WVMHE 129
             WVMHE
Sbjct:   137 WVMHE 141

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0048366 "leaf development" evidence=IMP

GO:0048504 "regulation of timing of organ formation" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010160 "formation of organ boundary" evidence=IGI

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	140
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	5e-37

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  122 bits (309), Expect = 5e-37
 Identities = 54/128 (42%), Positives = 72/128 (56%), Gaps = 5/128 (3%)

Query: 4   LVGFRFKPTNEEIIS-LLKKKRLDPDFSVHT-IKEIDFYSFDPWDLPRHSEIQCEEKVWY 61
             GFRF PT+EE++   LK+K L     +   I E+D Y F+PWDLP   + +  ++ WY
Sbjct: 2   PPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLP-DGKAKGGDREWY 60

Query: 62  FYCERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKA 121
           F+  R  K     + +R T SGYWK TGK   +  K   EV+G KK L F  +  A K  
Sbjct: 61  FFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGG-EVVGMKKTLVFY-KGRAPKGE 118

Query: 122 KTEWVMHE 129
           KT+WVMHE
Sbjct: 119 KTDWVMHE 126

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=1.4e-48  Score=276.29  Aligned_cols=127  Identities=40%  Similarity=0.734  Sum_probs=95.1

Q ss_pred             CCCcceecCCHHHHHH-HHHhhhcCCCCCc-ccEEeccCCCCCCCCCCCcccccccCceEEEEEeeccccccCccccccC
Q 032472            3 SLVGFRFKPTNEEIIS-LLKKKRLDPDFSV-HTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYCERYYKSAKSKQAHRRT   80 (140)
Q Consensus         3 lp~G~rF~PtdeELv~-yL~~ki~g~~~~~-~~I~~~Dvy~~~P~~L~~~~~~~~~~~~wyFF~~~~~~~~~~~r~~R~~   80 (140)
                      |||||||+|||+|||. ||++|+.|.+++. ++|+++|||++|||+|+....  .++++||||+++.+++.++.|.+|++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~--~~~~~~yFF~~~~~~~~~~~r~~R~~   78 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFK--GGDEEWYFFSPRKKKYPNGGRPNRVT   78 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSS--S-SSEEEEEEE----------S-EEE
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhcc--CCCceEEEEEecccccCCcccccccc
Confidence            8999999999999999 9999999999987 699999999999999994222  25679999999999998899999999


Q ss_pred             CCcEEEecCCceeEEeCCCCeEEEeEEEeeeeecCCCCCCCCcCeEEEEEEeC
Q 032472           81 KSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTEWVMHEISVG  133 (140)
Q Consensus        81 ~~G~W~~~g~~~~i~~~~~g~~vG~k~~~~f~~~~~~~~~~kt~W~M~EY~l~  133 (140)
                      ++|+||++|+.+.|... ++.++|+|++|+||.++ .+++.+|+|+||||+|.
T Consensus        79 ~~G~Wk~~g~~~~i~~~-~g~~iG~k~~l~f~~~~-~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   79 GGGYWKSTGKEKPIKDP-GGKVIGFKKTLVFYSGK-SPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             TTEEEEEECEEEEEEE--TTCEEEEEEEEEEEESS-TTS-EEEEEEEEEEEE-
T ss_pred             cceEEeecccccccccc-cceeeeeEEEEEEEecc-CCCCCcCCeEEEEEEeC
Confidence            99999999999999975 79999999999999887 77889999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	140
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		2e-18
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		2e-18
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		2e-17

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 67/125 (53%), Gaps = 6/125 (4%)
Query: 6   GFRFKPTNEEI-ISLLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYC 64
           GFRF PT+EE+ +  L +K    DFS+  I EID Y FDPW LP  +     EK WYF+ 
Sbjct: 23  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG--EKEWYFFS 80
Query: 65  ERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTE 124
            R  K     + +R   SGYWK TG    I  +   + +G KK L F   + A K  KT 
Sbjct: 81  PRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG--QRVGIKKALVFYIGK-APKGTKTN 137
Query: 125 WVMHE 129
           W+MHE
Sbjct: 138 WIMHE 142

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 67/125 (53%), Gaps = 6/125 (4%)
Query: 6   GFRFKPTNEEI-ISLLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYC 64
           GFRF PT+EE+ +  L +K    DFS+  I EID Y FDPW LP  +     EK WYF+ 
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG--EKEWYFFS 77
Query: 65  ERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTE 124
            R  K     + +R   SGYWK TG    I  +   + +G KK L F   + A K  KT 
Sbjct: 78  PRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG--QRVGIKKALVFYIGK-APKGTKTN 134
Query: 125 WVMHE 129
           W+MHE
Sbjct: 135 WIMHE 139

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 6   GFRFKPTNEEIIS-LLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYC 64
           GFRF PT++E++   L +K       V  I E+D Y FDPWDLP  +     E  WYF+ 
Sbjct: 18  GFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGARE--WYFFT 75
Query: 65  ERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTE 124
            R  K     + +R   +GYWK TG    +  +  T  +G KK L F   + A +  KT+
Sbjct: 76  PRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRT--LGIKKALVFYAGK-APRGVKTD 132
Query: 125 WVMHEISV 132
           W+MHE  +
Sbjct: 133 WIMHEYRL 140

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	140
1ut7_A	171	No apical meristem protein; transcription regulati	1e-40
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	3e-40

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  132 bits (335), Expect = 1e-40
 Identities = 53/126 (42%), Positives = 67/126 (53%), Gaps = 6/126 (4%)

Query: 5   VGFRFKPTNEEIISL-LKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFY 63
            GFRF PT+EE++   L +K    DFS+  I EID Y FDPW LP  +     EK WYF+
Sbjct: 19  PGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALF--GEKEWYFF 76

Query: 64  CERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKT 123
             R  K     + +R   SGYWK TG    I  +   + +G KK L F   + A K  KT
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG--QRVGIKKALVFYIGK-APKGTKT 133

Query: 124 EWVMHE 129
            W+MHE
Sbjct: 134 NWIMHE 139

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  131 bits (332), Expect = 3e-40
 Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 6/126 (4%)

Query: 5   VGFRFKPTNEEIISL-LKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFY 63
            GFRF PT++E++   L +K       V  I E+D Y FDPWDLP  +      + WYF+
Sbjct: 17  PGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALF--GAREWYFF 74

Query: 64  CERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKT 123
             R  K     + +R   +GYWK TG    +  +     +G KK L F   + A +  KT
Sbjct: 75  TPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRG--RTLGIKKALVFYAGK-APRGVKT 131

Query: 124 EWVMHE 129
           +W+MHE
Sbjct: 132 DWIMHE 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	140
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=3.8e-54  Score=317.20  Aligned_cols=131  Identities=35%  Similarity=0.742  Sum_probs=118.7

Q ss_pred             CCCCCcceecCCHHHHHH-HHHhhhcCCCCCcccEEeccCCCCCCCCCCCcccccccCceEEEEEeeccccccCcccccc
Q 032472            1 MDSLVGFRFKPTNEEIIS-LLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYCERYYKSAKSKQAHRR   79 (140)
Q Consensus         1 ~~lp~G~rF~PtdeELv~-yL~~ki~g~~~~~~~I~~~Dvy~~~P~~L~~~~~~~~~~~~wyFF~~~~~~~~~~~r~~R~   79 (140)
                      +.|||||||+|||||||. ||++|+.|.+++.++|.++|||++|||+||+.+..  ++.+||||+++.+++++|.|.+|+
T Consensus        13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~--g~~ewYFFs~r~~ky~~g~R~nR~   90 (174)
T 3ulx_A           13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALF--GAREWYFFTPRDRKYPNGSRPNRA   90 (174)
T ss_dssp             TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSS--CSSEEEEEEECCC-----CCSCEE
T ss_pred             cCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhcc--CCceEEEEeccccccCCCCCceee
Confidence            579999999999999999 99999999999999999999999999999998754  578999999999999999999999


Q ss_pred             CCCcEEEecCCceeEEeCCCCeEEEeEEEeeeeecCCCCCCCCcCeEEEEEEeCCCC
Q 032472           80 TKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTEWVMHEISVGDDP  136 (140)
Q Consensus        80 ~~~G~W~~~g~~~~i~~~~~g~~vG~k~~~~f~~~~~~~~~~kt~W~M~EY~l~~~~  136 (140)
                      +++|+||++|+++.|..  +|.+||+|++|+||.++ ++++.+|+|+||||+|.++.
T Consensus        91 t~~G~WkatG~dk~I~~--~g~~vG~KktLvFy~g~-~p~g~kT~WvMhEY~L~~~~  144 (174)
T 3ulx_A           91 AGNGYWKATGADKPVAP--RGRTLGIKKALVFYAGK-APRGVKTDWIMHEYRLADAG  144 (174)
T ss_dssp             ETTEEEEECSCCEEECC--SSSCCEEEEEEEEEESS-TTSCEEEEEEEEEEEECSCC
T ss_pred             cCCceEccCCCCcEEee--CCcEEEEEEEEEEecCC-CCCCCcCCeEEEEEEeCCCC
Confidence            99999999999999985  47899999999999999 89999999999999999864

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=1.5e-53  Score=313.64  Aligned_cols=131  Identities=40%  Similarity=0.721  Sum_probs=116.6

Q ss_pred             CCCCCcceecCCHHHHHH-HHHhhhcCCCCCcccEEeccCCCCCCCCCCCcccccccCceEEEEEeeccccccCcccccc
Q 032472            1 MDSLVGFRFKPTNEEIIS-LLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYCERYYKSAKSKQAHRR   79 (140)
Q Consensus         1 ~~lp~G~rF~PtdeELv~-yL~~ki~g~~~~~~~I~~~Dvy~~~P~~L~~~~~~~~~~~~wyFF~~~~~~~~~~~r~~R~   79 (140)
                      +.|||||||+|||||||. ||++|+.|.+++.++|+++|||.+|||+||+....  ++++||||+++.+++++|.|++|+
T Consensus        15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~--g~~ewyFFs~r~~k~~~g~R~~R~   92 (171)
T 1ut7_A           15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALF--GEKEWYFFSPRDRKYPNGSRPNRV   92 (171)
T ss_dssp             SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSS--CSSEEEEEEECCC-------CCEE
T ss_pred             cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhc--CCccEEEEeccccccCCCCccccc
Confidence            479999999999999999 99999999999999999999999999999988654  688999999999999999999999


Q ss_pred             CCCcEEEecCCceeEEeCCCCeEEEeEEEeeeeecCCCCCCCCcCeEEEEEEeCCCC
Q 032472           80 TKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTEWVMHEISVGDDP  136 (140)
Q Consensus        80 ~~~G~W~~~g~~~~i~~~~~g~~vG~k~~~~f~~~~~~~~~~kt~W~M~EY~l~~~~  136 (140)
                      +++|+||++|+++.|..  ++.+||+|++|+||.++ ++++.+|+|+||||+|.+++
T Consensus        93 t~~G~Wk~tG~~k~I~~--~~~~vG~KktLvFy~g~-~p~g~kT~WvMhEY~l~~~~  146 (171)
T 1ut7_A           93 AGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGK-APKGTKTNWIMHEYRLIEPS  146 (171)
T ss_dssp             ETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESS-TTSCEEEEEEEEEEEECCCC
T ss_pred             CCCCEEeccCCCceEEe--cCcEEEEEEEEEEEcCc-CCCCCcCCeEEEEEEcCCCc
Confidence            99999999999999996  46999999999999999 88999999999999999864

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	140
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	3e-32

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  110 bits (275), Expect = 3e-32
 Identities = 52/133 (39%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 5   VGFRFKPTNEEIIS-LLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFY 63
            GFRF PT+EE++   L +K    DFS+  I EID Y FDPW LP  +    +E  WYF+
Sbjct: 19  PGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKE--WYFF 76

Query: 64  CERYYKSAKSKQAHRRTKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKT 123
             R  K     + +R   SGYWK TG    I  +   + +G KK L F   + A K  KT
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEG--QRVGIKKALVFYIGK-APKGTKT 133

Query: 124 EWVMHEISVGDDP 136
            W+MHE  + +  
Sbjct: 134 NWIMHEYRLIEPS 146

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	140
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2e-52  Score=304.99  Aligned_cols=131  Identities=40%  Similarity=0.721  Sum_probs=116.0

Q ss_pred             CCCCCcceecCCHHHHHH-HHHhhhcCCCCCcccEEeccCCCCCCCCCCCcccccccCceEEEEEeeccccccCcccccc
Q 032472            1 MDSLVGFRFKPTNEEIIS-LLKKKRLDPDFSVHTIKEIDFYSFDPWDLPRHSEIQCEEKVWYFYCERYYKSAKSKQAHRR   79 (140)
Q Consensus         1 ~~lp~G~rF~PtdeELv~-yL~~ki~g~~~~~~~I~~~Dvy~~~P~~L~~~~~~~~~~~~wyFF~~~~~~~~~~~r~~R~   79 (140)
                      |+|||||||+|||||||. ||++|+.|.|++.++|+++|||++|||+||+....  ++++||||+++.++++++.|.+|+
T Consensus        15 l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~--~~~~wyFft~~~~k~~~g~r~~R~   92 (166)
T d1ut7a_          15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALF--GEKEWYFFSPRDRKYPNGSRPNRV   92 (166)
T ss_dssp             SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSS--CSSEEEEEEECCC-------CCEE
T ss_pred             ccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhcc--CcceEEEEeeeccccCCCCccccc
Confidence            689999999999999999 99999999999999999999999999999987643  678899999999999999999999


Q ss_pred             CCCcEEEecCCceeEEeCCCCeEEEeEEEeeeeecCCCCCCCCcCeEEEEEEeCCCC
Q 032472           80 TKSGYWKVTGKGSDIKRKNSTEVIGTKKILPFCPRRSASKKAKTEWVMHEISVGDDP  136 (140)
Q Consensus        80 ~~~G~W~~~g~~~~i~~~~~g~~vG~k~~~~f~~~~~~~~~~kt~W~M~EY~l~~~~  136 (140)
                      +++|+||++|+++.|.+  +|.+||+|++|+||+++ ++++.+|+|+||||+|.+++
T Consensus        93 ~g~G~Wk~~g~~~~i~~--~g~~vG~kk~l~fy~~~-~~~~~~t~W~M~EY~l~~~~  146 (166)
T d1ut7a_          93 AGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGK-APKGTKTNWIMHEYRLIEPS  146 (166)
T ss_dssp             ETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESS-TTSCEEEEEEEEEEEECCCC
T ss_pred             cCCCEecccCCCceEec--CCcEEEEEEEEEEEecC-CCCCCccCeEEEEEecCCcc
Confidence            99999999999998885  58999999999999999 88899999999999998765