Citrus Sinensis ID: 032490

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MCSQVVSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGSESERS
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHcccEEEEEccccccEEEEEEccccccccccHHHHHHHHHHHHccccccccEEEEEEEcccccccccccHHHHHHHHHHccHHHHHcccEEEEEcccHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHcHHcHHHHHHHHHHHEEccccccccEEEEEEEcccccccccHHHHHHHHHHHHcHHcccccEEEEEEEcccccccccccHHHHHHHHHHHcHHHHHHHcEEEEEcccHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MCSQVVSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLServyprlgkkAFTVLYVHtgvqrsenfAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRlffngvggsesers
Flexible Loop (DISEMBL)
mcsqvvseseqeELIDRLEIfkihgrdkqgrKILRIIGkffparllsVEVLKRYLservyprlgkKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNgvggsesers
Low Complexity Region (SEG)
MCsqvvseseqeeLIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGSESERS
Disordered region (IsUnstruct)
*************LIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGV********
Disordered Region (DISOPRED)
******S***QEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFN**********
Disordered Region (DISEMBL)
************ELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGV********
Disordered Region (DISPRO)
*CSQVVSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNG*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCSQVVSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGSESERS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q292F9	542	Protein GDAP2 homolog OS=	yes	no	0.661	0.169	0.319	1e-08
Q7JUR6	540	Protein GDAP2 homolog OS=	no	no	0.661	0.170	0.319	1e-08
Q9DBL2	498	Ganglioside-induced diffe	yes	no	0.841	0.234	0.274	3e-07
Q9NXN4	497	Ganglioside-induced diffe	yes	no	0.820	0.229	0.285	3e-07
Q2KIX2	497	Ganglioside-induced diffe	yes	no	0.841	0.235	0.274	3e-07
Q5CZL1	496	Ganglioside-induced diffe	yes	no	0.834	0.233	0.276	4e-07
Q4R678	461	Ganglioside-induced diffe	N/A	no	0.841	0.253	0.274	4e-07
Q66HX8	504	Ganglioside-induced diffe	yes	no	0.705	0.194	0.300	4e-07
Q5XGM5	496	Ganglioside-induced diffe	N/A	no	0.834	0.233	0.284	4e-07
Q66H63	497	Ganglioside-induced diffe	yes	no	0.820	0.229	0.285	4e-07

>sp|Q292F9|GDAP2_DROPS Protein GDAP2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA15091 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 2/94 (2%)

Query: 25  GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFA 84
           G D+ GR ++   GK+FPA+ + +E    YL + + P + K  + + Y HT +  + N+ 
Sbjct: 390 GVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDP-IVKGDYVISYFHT-LTSTNNYP 447

Query: 85  GISALRSIYDAIPANVKENLQAVYFVHPGLQARL 118
            +  LR +Y  +P   K+NL+A Y VHP    ++
Sbjct: 448 SLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKM 481

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q7JUR6|GDAP2_DROME Protein GDAP2 homolog OS=Drosophila melanogaster GN=CG18812 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 2/94 (2%)

Query: 25  GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFA 84
           G D+ GR ++   GK+FPA+ + +E    YL + + P + K  + + Y HT +  + N+ 
Sbjct: 388 GVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDP-IVKGDYVISYFHT-LTSTNNYP 445

Query: 85  GISALRSIYDAIPANVKENLQAVYFVHPGLQARL 118
            +  LR +Y  +P   K+NL+A Y VHP    ++
Sbjct: 446 SLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKM 479

Drosophila melanogaster (taxid: 7227)

>sp|Q9DBL2|GDAP2_MOUSE Ganglioside-induced differentiation-associated protein 2 OS=Mus musculus GN=Gdap2 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 7/124 (5%)

Query: 6   VSESEQEELID--RLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRL 63
           + ++  E+L D   L+     G D  GR ++ ++G+  P  L+ ++    Y    V   +
Sbjct: 324 LCQARSEDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFI-HVMDHI 382

Query: 64  GKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FL 120
             K + ++Y HT +    N      L+ +YD +    K NL+AVYFVHP  ++++   F 
Sbjct: 383 AVKEYVLVYFHT-LTSDYNHLDSDFLKKLYDVVDIKYKRNLKAVYFVHPTFRSKVSTWFF 441

Query: 121 ATFG 124
            TF 
Sbjct: 442 TTFS 445

Mus musculus (taxid: 10090)

>sp|Q9NXN4|GDAP2_HUMAN Ganglioside-induced differentiation-associated protein 2 OS=Homo sapiens GN=GDAP2 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 5/119 (4%)

Query: 9   SEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAF 68
           SE    I  L+     G D  GR ++ ++G+  P  L+ ++    Y    V   +  K +
Sbjct: 328 SEDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFI-HVMDHIAVKEY 386

Query: 69  TVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATFG 124
            ++Y HT +    N      L+ +YD +    K NL+AVYFVHP  ++++   F  TF 
Sbjct: 387 VLVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTFS 444

Homo sapiens (taxid: 9606)

>sp|Q2KIX2|GDAP2_BOVIN Ganglioside-induced differentiation-associated protein 2 OS=Bos taurus GN=GDAP2 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 7/124 (5%)

Query: 6   VSESEQEELID--RLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRL 63
           + ++  E+L D   L+     G D  GR ++ ++G+  P  L+ ++    Y    V   +
Sbjct: 323 LCQARSEDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFI-HVMDHI 381

Query: 64  GKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FL 120
             K + ++Y HT +    N      L+ +YD +    K NL+AVYFVHP  ++++   F 
Sbjct: 382 AVKEYVLVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFF 440

Query: 121 ATFG 124
            TF 
Sbjct: 441 TTFS 444

Bos taurus (taxid: 9913)

>sp|Q5CZL1|GDAP2_XENTR Ganglioside-induced differentiation-associated protein 2 OS=Xenopus tropicalis PE=2 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 7/123 (5%)

Query: 6   VSESEQEELID--RLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRL 63
           +S +  E+L D   L+     G D  GR ++ ++G+  P  L+ +E    Y    +   +
Sbjct: 322 LSRARTEDLSDIAALKALYQSGVDNCGRTVMVVVGRNIPVLLIDMEKALLYFI-HMMDHV 380

Query: 64  GKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FL 120
             K + ++Y HT +    N      L+++YD +    K+NL+A+YFVHP  ++++   F 
Sbjct: 381 AAKEYVLVYFHT-LTGEHNHPDSDFLKNMYDIVDVKYKKNLKALYFVHPTFRSKVSSWFF 439

Query: 121 ATF 123
            TF
Sbjct: 440 TTF 442

Xenopus tropicalis (taxid: 8364)

>sp|Q4R678|GDAP2_MACFA Ganglioside-induced differentiation-associated protein 2 OS=Macaca fascicularis GN=GDAP2 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 7/124 (5%)

Query: 6   VSESEQEELID--RLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRL 63
           + ++  E+L D   L+     G D  GR ++ ++G+  P  L+ ++    Y    V   +
Sbjct: 287 LCQARSEDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFI-HVMDHI 345

Query: 64  GKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FL 120
             K + ++Y HT +    N      L+ +YD +    K NL+AVYFVHP  ++++   F 
Sbjct: 346 AVKEYVLVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFF 404

Query: 121 ATFG 124
            TF 
Sbjct: 405 TTFS 408

Macaca fascicularis (taxid: 9541)

>sp|Q66HX8|GDAP2_DANRE Ganglioside-induced differentiation-associated protein 2 OS=Danio rerio GN=gdap2 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 25  GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFA 84
           G D  GR ++ ++G+  P  L+ +E    Y    V   +  K + ++Y HT +    N  
Sbjct: 353 GVDLCGRTVMVVVGRNIPVMLIDMEKALLYFI-HVMDHITVKEYVMVYFHT-LTGEHNHL 410

Query: 85  GISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATFG 124
               L+ +YD + A  K+NL+A YFVHP  ++++   F  TF 
Sbjct: 411 DTDFLKKLYDIVDAKFKKNLRAFYFVHPTFRSKVSTWFFTTFS 453

Danio rerio (taxid: 7955)

>sp|Q5XGM5|GDAP2_XENLA Ganglioside-induced differentiation-associated protein 2 OS=Xenopus laevis PE=2 SV=1

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 7/123 (5%)

Query: 6   VSESEQEELID--RLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRL 63
           +S +  E+L D   L+     G D  GR ++ ++G+  P  L+ +E    Y    +   +
Sbjct: 322 LSRARTEDLSDIAALKALYQSGVDNCGRSVMVVVGRNIPVLLIDMEKALLYFI-HMMDHV 380

Query: 64  GKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FL 120
             K + ++Y HT +    N      L+++YD I    K+NL+A+YFVHP  ++++   F 
Sbjct: 381 TAKDYVLVYFHT-LTGEHNHLDSDFLKNMYDIIDVKYKKNLKALYFVHPTFRSKVSTWFF 439

Query: 121 ATF 123
            TF
Sbjct: 440 TTF 442

Xenopus laevis (taxid: 8355)

>sp|Q66H63|GDAP2_RAT Ganglioside-induced differentiation-associated-protein 2 OS=Rattus norvegicus GN=Gdap2 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 5/119 (4%)

Query: 9   SEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAF 68
           SE    I  L+     G D  GR ++ ++G+  P  L+ ++    Y    V   +  K +
Sbjct: 328 SEDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFI-HVMDHIAVKEY 386

Query: 69  TVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATFG 124
            ++Y HT +    N      L+ +YD +    K NL+AVYFVHP  ++++   F  TF 
Sbjct: 387 VLVYFHT-LTSEYNHLDSDFLKKLYDVVDIKYKRNLKAVYFVHPTFRSKVSTWFFTTFS 444

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
21553817	202	unknown [Arabidopsis thaliana]	0.928	0.638	0.761	3e-52
297798348	202	hypothetical protein ARALYDRAFT_491071 [	0.928	0.638	0.761	4e-52
15237117	202	SEC14 cytosolic factor family protein /	0.928	0.638	0.761	4e-52
217073614	203	unknown [Medicago truncatula]	0.798	0.546	0.828	2e-49
225431364	202	PREDICTED: ganglioside-induced different	0.877	0.603	0.756	3e-49
357483979	203	Ganglioside-induced differentiation-asso	0.798	0.546	0.819	7e-49
357483981	130	Ganglioside-induced differentiation-asso	0.798	0.853	0.819	8e-49
255579787	202	conserved hypothetical protein [Ricinus	0.920	0.633	0.718	2e-48
319993060	199	Sec14 like protein [Nicotiana benthamian	0.892	0.623	0.725	2e-47
319993062	199	Sec14 like protein [Nicotiana tabacum]	0.892	0.623	0.725	2e-47

>gi|21553817|gb|AAM62910.1| unknown [Arabidopsis thaliana]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/130 (76%), Positives = 117/130 (90%), Gaps = 1/130 (0%)

Query: 1   MCSQVVSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVY 60
           M SQ+ SE EQE+LI++LEIFKIHGRDK+GRKILRIIGKFFPAR LS++VLK+YL E+++
Sbjct: 1   MSSQI-SEIEQEQLIEKLEIFKIHGRDKRGRKILRIIGKFFPARFLSLDVLKKYLEEKIF 59

Query: 61  PRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFL 120
           PRLG+K F VLYVHTGVQRSENF GISALR+IYDAIP NV++NLQ VYF+HPGLQ+RLFL
Sbjct: 60  PRLGRKPFAVLYVHTGVQRSENFPGISALRAIYDAIPVNVRDNLQEVYFLHPGLQSRLFL 119

Query: 121 ATFGRLFFNG 130
           AT GR  F+G
Sbjct: 120 ATCGRFLFSG 129

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798348|ref|XP_002867058.1| hypothetical protein ARALYDRAFT_491071 [Arabidopsis lyrata subsp. lyrata] gi|297312894|gb|EFH43317.1| hypothetical protein ARALYDRAFT_491071 [Arabidopsis lyrata subsp. lyrata]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 99/130 (76%), Positives = 117/130 (90%), Gaps = 1/130 (0%)

Query: 1   MCSQVVSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVY 60
           M SQ+ SE EQE+LI++LEIFKIHGRDK+GRKILRIIGKFFPAR LS++VLK+YL E+++
Sbjct: 1   MSSQI-SEIEQEQLIEKLEIFKIHGRDKRGRKILRIIGKFFPARFLSLDVLKKYLEEKIF 59

Query: 61  PRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFL 120
           PRLG+K F VLYVHTGVQRSENF GISALR+IYDAIP NV++NLQ VYF+HPGLQ+RLFL
Sbjct: 60  PRLGRKPFAVLYVHTGVQRSENFPGISALRAIYDAIPVNVRDNLQEVYFLHPGLQSRLFL 119

Query: 121 ATFGRLFFNG 130
           AT GR  F+G
Sbjct: 120 ATCGRFLFSG 129

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237117|ref|NP_195300.1| SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] gi|3367593|emb|CAA20045.1| putative protein [Arabidopsis thaliana] gi|7270527|emb|CAB81484.1| putative protein [Arabidopsis thaliana] gi|17473778|gb|AAL38324.1| putative protein [Arabidopsis thaliana] gi|30725562|gb|AAP37803.1| At4g35750 [Arabidopsis thaliana] gi|332661158|gb|AEE86558.1| SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 99/130 (76%), Positives = 117/130 (90%), Gaps = 1/130 (0%)

Query: 1   MCSQVVSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVY 60
           M SQ+ SE EQE+LI++LEIFKIHGRDK+GRKILRIIGKFFPAR LS++VLK+YL E+++
Sbjct: 1   MSSQI-SEIEQEQLIEKLEIFKIHGRDKRGRKILRIIGKFFPARFLSLDVLKKYLEEKIF 59

Query: 61  PRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFL 120
           PRLG+K F VLYVHTGVQRSENF GISALR+IYDAIP NV++NLQ VYF+HPGLQ+RLFL
Sbjct: 60  PRLGRKPFAVLYVHTGVQRSENFPGISALRAIYDAIPVNVRDNLQEVYFLHPGLQSRLFL 119

Query: 121 ATFGRLFFNG 130
           AT GR  F+G
Sbjct: 120 ATCGRFLFSG 129

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073614|gb|ACJ85167.1| unknown [Medicago truncatula]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/111 (82%), Positives = 104/111 (93%)

Query: 20  IFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQR 79
           +FKI GRDK GRKILRIIGKFFPARL+SVEVLK++L ER++P+LGKK F VLY+HTGVQR
Sbjct: 19  VFKIKGRDKHGRKILRIIGKFFPARLVSVEVLKKFLEERIFPKLGKKKFAVLYIHTGVQR 78

Query: 80  SENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNG 130
           SENFAGIS+LRS+YDAIPANVKENL+AVYF+HPGLQARLFLATFGR FFN 
Sbjct: 79  SENFAGISSLRSVYDAIPANVKENLEAVYFIHPGLQARLFLATFGRFFFNA 129

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431364|ref|XP_002278653.1| PREDICTED: ganglioside-induced differentiation-associated protein 2 [Vitis vinifera] gi|297742206|emb|CBI34355.3| unnamed protein product [Vitis vinifera]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 93/123 (75%), Positives = 113/123 (91%), Gaps = 1/123 (0%)

Query: 1   MCSQVVSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVY 60
           MC+Q  S SEQE+L+++LEIFKI GRDK+GRKILRIIGK+FPAR LSV+V+K+YL ++++
Sbjct: 1   MCAQA-SPSEQEQLVEKLEIFKIRGRDKRGRKILRIIGKYFPARTLSVDVVKKYLEDKIF 59

Query: 61  PRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFL 120
           P+LGKK F+VLYVHT V+RSENF GISALRSIY+AIP NVKENL+AVYFVHPGLQ+RLFL
Sbjct: 60  PKLGKKQFSVLYVHTDVERSENFPGISALRSIYEAIPVNVKENLEAVYFVHPGLQSRLFL 119

Query: 121 ATF 123
           ATF
Sbjct: 120 ATF 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483979|ref|XP_003612276.1| Ganglioside-induced differentiation-associated protein [Medicago truncatula] gi|355513611|gb|AES95234.1| Ganglioside-induced differentiation-associated protein [Medicago truncatula] gi|388500088|gb|AFK38110.1| unknown [Medicago truncatula]

 Score =  198 bits (503), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 91/111 (81%), Positives = 103/111 (92%)

Query: 20  IFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQR 79
           +FKI GRDK GRKILRIIGKFFPARL+SVEVLK++L ER++P+LGKK F VLY+HTGVQR
Sbjct: 19  VFKIKGRDKHGRKILRIIGKFFPARLVSVEVLKKFLEERIFPKLGKKKFAVLYIHTGVQR 78

Query: 80  SENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNG 130
           SENFAGIS+LRS+YDAIPANVKENL+AVYF+HPGLQARLFLATFGR  FN 
Sbjct: 79  SENFAGISSLRSVYDAIPANVKENLEAVYFIHPGLQARLFLATFGRFLFNA 129

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483981|ref|XP_003612277.1| Ganglioside-induced differentiation-associated protein [Medicago truncatula] gi|355513612|gb|AES95235.1| Ganglioside-induced differentiation-associated protein [Medicago truncatula]

 Score =  197 bits (502), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 91/111 (81%), Positives = 103/111 (92%)

Query: 20  IFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQR 79
           +FKI GRDK GRKILRIIGKFFPARL+SVEVLK++L ER++P+LGKK F VLY+HTGVQR
Sbjct: 19  VFKIKGRDKHGRKILRIIGKFFPARLVSVEVLKKFLEERIFPKLGKKKFAVLYIHTGVQR 78

Query: 80  SENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNG 130
           SENFAGIS+LRS+YDAIPANVKENL+AVYF+HPGLQARLFLATFGR  FN 
Sbjct: 79  SENFAGISSLRSVYDAIPANVKENLEAVYFIHPGLQARLFLATFGRFLFNA 129

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579787|ref|XP_002530731.1| conserved hypothetical protein [Ricinus communis] gi|223529695|gb|EEF31637.1| conserved hypothetical protein [Ricinus communis]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 92/128 (71%), Positives = 109/128 (85%)

Query: 3   SQVVSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPR 62
           S  +S +EQ +LI++LEIFKI GRDK G  ILRIIGKFFPAR+++V+ LK YL E++YPR
Sbjct: 2   STHISYAEQHQLIEKLEIFKILGRDKHGHNILRIIGKFFPARIITVDALKSYLEEKIYPR 61

Query: 63  LGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLAT 122
           L  K F+VLYVHTGVQRSENF GISALRS+YD+IP  VKENLQA+YF+HPGLQARLFLAT
Sbjct: 62  LETKPFSVLYVHTGVQRSENFPGISALRSVYDSIPIKVKENLQALYFLHPGLQARLFLAT 121

Query: 123 FGRLFFNG 130
           FGR  F+G
Sbjct: 122 FGRFLFSG 129

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|319993060|dbj|BAJ61955.1| Sec14 like protein [Nicotiana benthamiana]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/124 (72%), Positives = 109/124 (87%)

Query: 7   SESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKK 66
           SE EQE+LI++LEIFKI GRDK+GRK LRIIGKFFPAR LSVEV+K+YL+E+++P L K+
Sbjct: 3   SEVEQEQLIEKLEIFKIQGRDKRGRKTLRIIGKFFPARNLSVEVVKKYLAEKIFPELEKR 62

Query: 67  AFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRL 126
            F V+YVHT V++SENF G+SALRS YDAIP  V+ENL+AVYF+HPGLQARLFLATFGR 
Sbjct: 63  PFAVVYVHTDVEKSENFPGVSALRSFYDAIPVKVRENLEAVYFLHPGLQARLFLATFGRF 122

Query: 127 FFNG 130
            F+G
Sbjct: 123 IFSG 126

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|319993062|dbj|BAJ61956.1| Sec14 like protein [Nicotiana tabacum]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/124 (72%), Positives = 109/124 (87%)

Query: 7   SESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKK 66
           SE EQE+LI++LEIFKI GRDK+GRK LRIIGKFFPAR LSVEV+K+YL+E+++P L K+
Sbjct: 3   SEVEQEQLIEKLEIFKIQGRDKRGRKTLRIIGKFFPARNLSVEVVKKYLAEKIFPELEKR 62

Query: 67  AFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRL 126
            F V+YVHT V++SENF G+SALRS YDAIP  V+ENL+AVYF+HPGLQARLFLATFGR 
Sbjct: 63  PFAVVYVHTDVEKSENFPGVSALRSFYDAIPVKVRENLEAVYFLHPGLQARLFLATFGRF 122

Query: 127 FFNG 130
            F+G
Sbjct: 123 IFSG 126

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
TAIR|locus:2128018	202	AT4G35750 "AT4G35750" [Arabido	0.841	0.579	0.777	8.8e-47
TAIR|locus:2076234	237	AT3G10210 "AT3G10210" [Arabido	0.834	0.489	0.439	1.9e-26
FB|FBgn0042135	540	CG18812 [Drosophila melanogast	0.618	0.159	0.340	5.4e-09
UNIPROTKB|Q292F9	542	GA15091 "Protein GDAP2 homolog	0.618	0.158	0.340	5.4e-09
UNIPROTKB|E1C8K9	496	GDAP2 "Uncharacterized protein	0.733	0.205	0.289	7.7e-09
UNIPROTKB|E9PNR6	192	ARHGAP1 "Rho GTPase-activating	0.769	0.557	0.318	2e-08
UNIPROTKB|Q2KIX2	497	GDAP2 "Ganglioside-induced dif	0.697	0.195	0.294	3.4e-08
UNIPROTKB|E2RCF0	497	GDAP2 "Uncharacterized protein	0.697	0.195	0.294	3.4e-08
UNIPROTKB|Q9NXN4	497	GDAP2 "Ganglioside-induced dif	0.697	0.195	0.294	3.4e-08
UNIPROTKB|F1SAY8	497	GDAP2 "Uncharacterized protein	0.697	0.195	0.294	3.4e-08

TAIR|locus:2128018 AT4G35750 "AT4G35750" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 91/117 (77%), Positives = 107/117 (91%)

Query:    14 LIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYV 73
             LI++LEIFKIHGRDK+GRKILRIIGKFFPAR LS++VLK+YL E+++PRLG+K F VLYV
Sbjct:    13 LIEKLEIFKIHGRDKRGRKILRIIGKFFPARFLSLDVLKKYLEEKIFPRLGRKPFAVLYV 72

Query:    74 HTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNG 130
             HTGVQRSENF GISALR+IYDAIP NV++NLQ VYF+HPGLQ+RLFLAT GR  F+G
Sbjct:    73 HTGVQRSENFPGISALRAIYDAIPVNVRDNLQEVYFLHPGLQSRLFLATCGRFLFSG 129

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2076234 AT3G10210 "AT3G10210" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 51/116 (43%), Positives = 85/116 (73%)

Query:    15 IDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVH 74
             +D L+ F + G D+ G +I RI+GK+FPAR++S E LK+Y+S+++  +  +    ++Y+H
Sbjct:    49 LDLLQFFTLQGLDRSGNRIFRIVGKYFPARVVSAERLKKYISQKISNQCPEGPLCLVYMH 108

Query:    75 TGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNG 130
             + VQ+ +N  GI+ LR IY+ +P+++K+ LQ VYF+HPGL++RL +AT GRL  +G
Sbjct:   109 STVQKDDNSPGITILRWIYEDLPSDIKDRLQLVYFIHPGLRSRLVIATLGRLLLSG 164

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

FB|FBgn0042135 CG18812 [Drosophila melanogaster (taxid:7227)]

 Score = 143 (55.4 bits), Expect = 5.4e-09, P = 5.4e-09
 Identities = 30/88 (34%), Positives = 50/88 (56%)

Query:    25 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFA 84
             G D+ GR ++   GK+FPA+ + +E    YL + + P + K  + + Y HT +  + N+ 
Sbjct:   388 GVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDP-IVKGDYVISYFHT-LTSTNNYP 445

Query:    85 GISALRSIYDAIPANVKENLQAVYFVHP 112
              +  LR +Y  +P   K+NL+A Y VHP
Sbjct:   446 SLHWLREVYSVLPYKYKKNLKAFYIVHP 473

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q292F9 GA15091 "Protein GDAP2 homolog" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 143 (55.4 bits), Expect = 5.4e-09, P = 5.4e-09
 Identities = 30/88 (34%), Positives = 50/88 (56%)

Query:    25 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFA 84
             G D+ GR ++   GK+FPA+ + +E    YL + + P + K  + + Y HT +  + N+ 
Sbjct:   390 GVDRLGRPVIVFCGKWFPAQNIDLEKALLYLIKLLDP-IVKGDYVISYFHT-LTSTNNYP 447

Query:    85 GISALRSIYDAIPANVKENLQAVYFVHP 112
              +  LR +Y  +P   K+NL+A Y VHP
Sbjct:   448 SLHWLREVYSVLPYKYKKNLKAFYIVHP 475

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1C8K9 GDAP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 141 (54.7 bits), Expect = 7.7e-09, P = 7.7e-09
 Identities = 31/107 (28%), Positives = 56/107 (52%)

Query:    20 IFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQR 79
             +++  G D  GR ++ ++G+  P  L+ +E    Y    V   +  K + ++Y HT +  
Sbjct:   338 LYQTVGVDNCGRTVMVVVGRNIPVTLIDMEKALLYFIH-VMDHIAVKEYVLVYFHT-LTN 395

Query:    80 SENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATF 123
               N    + L+ +YD + A  K NL+A+YFVHP  ++++   F  TF
Sbjct:   396 DYNQLDSNFLKKLYDVVDAKYKRNLKALYFVHPTFRSKVSTWFFTTF 442

GO:0032526 "response to retinoic acid" evidence=IEA

UNIPROTKB|E9PNR6 ARHGAP1 "Rho GTPase-activating protein 1" [Homo sapiens (taxid:9606)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 35/110 (31%), Positives = 56/110 (50%)

Query:    15 IDRLEIFKIHGRDKQGRKILRIIG-KFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYV 73
             I R +I ++ G DK GRKI+     +  P+  L    L  YL   +  +  +  +T+LY+
Sbjct:    67 IARHQIVEVAGDDKYGRKIIVFSACRMPPSHQLDHSKLLGYLKHTL-DQYVESDYTLLYL 125

Query:    74 HTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATF 123
             H G+  S+N   +S LR  Y       K+N++A+Y VHP +  +  L  F
Sbjct:   126 HHGLT-SDNKPSLSWLRDAYREFDRKYKKNIKALYIVHPTMFIKTLLILF 174

GO:0001726 "ruffle" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030675 "Rac GTPase activator activity" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|Q2KIX2 GDAP2 "Ganglioside-induced differentiation-associated protein 2" [Bos taurus (taxid:9913)]

 Score = 135 (52.6 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 30/102 (29%), Positives = 51/102 (50%)

Query:    25 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFA 84
             G D  GR ++ ++G+  P  L+ ++    Y    V   +  K + ++Y HT +    N  
Sbjct:   344 GVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSEYNHL 401

Query:    85 GISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATF 123
                 L+ +YD +    K NL+AVYFVHP  ++++   F  TF
Sbjct:   402 DSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTF 443

GO:0032526 "response to retinoic acid" evidence=IEA

UNIPROTKB|E2RCF0 GDAP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 135 (52.6 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 30/102 (29%), Positives = 51/102 (50%)

Query:    25 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFA 84
             G D  GR ++ ++G+  P  L+ ++    Y    V   +  K + ++Y HT +    N  
Sbjct:   344 GVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSEYNHL 401

Query:    85 GISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATF 123
                 L+ +YD +    K NL+AVYFVHP  ++++   F  TF
Sbjct:   402 DSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTF 443

GO:0032526 "response to retinoic acid" evidence=IEA

UNIPROTKB|Q9NXN4 GDAP2 "Ganglioside-induced differentiation-associated protein 2" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 30/102 (29%), Positives = 51/102 (50%)

Query:    25 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFA 84
             G D  GR ++ ++G+  P  L+ ++    Y    V   +  K + ++Y HT +    N  
Sbjct:   344 GVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSEYNHL 401

Query:    85 GISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATF 123
                 L+ +YD +    K NL+AVYFVHP  ++++   F  TF
Sbjct:   402 DSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTF 443

GO:0032526 "response to retinoic acid" evidence=IEA

UNIPROTKB|F1SAY8 GDAP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 135 (52.6 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 30/102 (29%), Positives = 51/102 (50%)

Query:    25 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFA 84
             G D  GR ++ ++G+  P  L+ ++    Y    V   +  K + ++Y HT +    N  
Sbjct:   344 GVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSEYNHL 401

Query:    85 GISALRSIYDAIPANVKENLQAVYFVHPGLQARL---FLATF 123
                 L+ +YD +    K NL+AVYFVHP  ++++   F  TF
Sbjct:   402 DSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTF 443

GO:0032526 "response to retinoic acid" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	139
pfam13716	149	pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain	9e-28
smart00516	158	smart00516, SEC14, Domain in homologues of a S	3e-11
cd00170	157	cd00170, SEC14, Sec14p-like lipid-binding domain	5e-08

>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain

 Score = 99.7 bits (249), Expect = 9e-28
 Identities = 44/110 (40%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 20  IFKIHGRDKQGRKILRIIGKFFPAR-LLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQ 78
            F   GRDK+GR +L    K  PA  L  ++ L  YL   +   L  K F V+  HTGV 
Sbjct: 2   AFLSGGRDKEGRPVLVFDAKRLPASDLDDLDRLLFYLLSILSEELKPKGFVVVIDHTGVT 61

Query: 79  RSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFF 128
           R  N    S L+ +Y  +P    +NL+AVY VHP    + FL T GRLF 
Sbjct: 62  R--NKPSWSWLKKLYKLLPRAFPKNLKAVYIVHPSTFLKKFLKTLGRLFS 109

This family includes divergent members of the CRAL-TRIO domain family. This family includes ECM25 that contains a divergent CRAL-TRIO domain identified by Gallego and colleagues. Length = 149

>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S

 Score = 56.9 bits (138), Expect = 3e-11
 Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 11/118 (9%)

Query: 15  IDRLEIFKIHGR--DKQGRKILRIIGKFFPARLLSVEVLKRYL---SERVYPRLGKKAFT 69
           ++ L+ +   GR  DK GR +L      F  + +++E L RYL    E++     +K   
Sbjct: 2   LELLKAYIPGGRGYDKDGRPVLIERAGRFDLKSVTLEELLRYLVYVLEKILQE--EKKTG 59

Query: 70  VLYVHTGVQRSENF----AGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATF 123
            +   T +   +        +S LR I   +  +  E L  VY ++P    R+     
Sbjct: 60  GIEGFTVIFDLKGLSMSNPDLSVLRKILKILQDHYPERLGKVYIINPPWFFRVLWKII 117

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 158

>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain

 Score = 48.5 bits (116), Expect = 5e-08
 Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 10/119 (8%)

Query: 12  EELIDRLEIFKIHG-RDKQGRKILRII-GKFFPARLLSVEVLKRYLS---ERVYPRLGKK 66
            E +  L      G RDK+GR +L I  G    ++ L  E L RYL    E++     ++
Sbjct: 1   LEELKELGKVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQ 60

Query: 67  AFTVLYVH--TGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATF 123
               + +    G+  S      S L+ I   +  N  E L+AVY ++P      F   +
Sbjct: 61  VEGFVVIIDLKGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPP---WFFKVLW 116

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 157

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
KOG4406	467	consensus CDC42 Rho GTPase-activating protein [Sig	99.96
PF13716	149	CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q	99.94
smart00516	158	SEC14 Domain in homologues of a S. cerevisiae phos	99.74
cd00170	157	SEC14 Sec14p-like lipid-binding domain. Found in s	99.68
KOG1470	324	consensus Phosphatidylinositol transfer protein PD	99.47
PF00650	159	CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T	99.42
KOG1471	317	consensus Phosphatidylinositol transfer protein SE	98.64
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	96.12

>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]

Probab=99.96  E-value=3.6e-30  Score=214.39  Aligned_cols=126  Identities=29%  Similarity=0.407  Sum_probs=118.4

Q ss_pred             CCChhhhHHHHHhc--CcEEEecc--CCCCCeEEEEEcccCCC-cCCCHHHHHHHHHHHhhcccCCCCeEEEEEecCccc
Q 032490            5 VVSESEQEELIDRL--EIFKIHGR--DKQGRKILRIIGKFFPA-RLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQR   79 (139)
Q Consensus         5 ~i~~~e~~~~i~~~--~ily~~G~--D~~GrpVvvi~a~~~p~-~~~d~e~ll~y~~~~~ld~~~~~~y~lVy~~tg~~~   79 (139)
                      .-+.+++|+|+.++  +++...|.  |++||+|+|+.||++|+ +++|.-+++.|.++ ++|++++++|++||||.|+ .
T Consensus        64 ~~p~ed~fyd~~~H~~ei~qvi~~~~D~~gr~iivv~a~rlp~~~eld~~~li~~~v~-~id~~Ve~DYt~vYfh~gl-~  141 (467)
T KOG4406|consen   64 IEPKEDPFYDIARHEREILQVIGDAKDKQGRKIIVVYACRLPSSSELDDIRLISYLVY-TIDKYVENDYTLVYFHHGL-P  141 (467)
T ss_pred             cCcccccHHHHHHhhhheeeeccCcccccCCeeEEEEEecCCchhhhhhHHHHHHHHH-HHHHHHhccceeeehhcCC-c
Confidence            34668899999999  99988766  99999999999999999 77898889999998 6999999999999999999 7


Q ss_pred             CcCcccHHHHHHHHHhcChhhHhccceEEEEcCChHHHHHHHHhcchhccCCC
Q 032490           80 SENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVG  132 (139)
Q Consensus        80 ~~n~p~~~wl~~~y~~l~~~~kknLk~lyiVHPt~~~K~~~~~~~pfi~s~~~  132 (139)
                      +.|+|+++|+.++|..+||+|+|||||+|+|||+||+|++|.+++||||.+.+
T Consensus       142 s~nkp~l~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~  194 (467)
T KOG4406|consen  142 SDNKPYLQLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFT  194 (467)
T ss_pred             ccccchHHHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhh
Confidence            99999999999999999999999999999999999999999999999998765

>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A

Probab=99.94  E-value=3.7e-27  Score=172.15  Aligned_cols=110  Identities=27%  Similarity=0.426  Sum_probs=86.2

Q ss_pred             CcEEEeccCCCCCeEEEEEcccCCCcCCCHHHHHHHHHHHhh-cccCCCCeEEEEEecCcccCcCcccHHHHHHHHHhcC
Q 032490           19 EIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVY-PRLGKKAFTVLYVHTGVQRSENFAGISALRSIYDAIP   97 (139)
Q Consensus        19 ~ily~~G~D~~GrpVvvi~a~~~p~~~~d~e~ll~y~~~~~l-d~~~~~~y~lVy~~tg~~~~~n~p~~~wl~~~y~~l~   97 (139)
                      .+++.+|+|++||||+++.++++ +...|+|+++.|++++ + +.+.+++|+||||++++ +..|.|+++|++++|+.++
T Consensus         2 ~~~~~gG~d~~g~pV~~~~~~~~-~~~~~~~~ll~yl~~~-l~~~~~~~~f~vVid~~~~-~~~~~~~~~~l~~~~~~l~   78 (149)
T PF13716_consen    2 IFFYPGGRDREGRPVVVFIASRL-PSSDDLERLLLYLLST-LSEEVVDKPFSVVIDHTGF-SRSSEPSLSWLKQLYKLLP   78 (149)
T ss_dssp             SE-EEEEEBTTS-EEEEEEGGG--C-TTHHHHHHHHHHHH-H-TTTTTS-EEEEEE-TT---GGG---HHHHHHTTTSS-
T ss_pred             eEEEecccCCCcCEEEEEECCcC-cchhhHHHHHHHHHHh-hhHHhcCCCEEEEEEcCCC-ccccCCchHHHHHHHHHHH
Confidence            46789999999999999999999 4345999999999985 6 88899999999999999 7889999999999999999


Q ss_pred             hhhHhccceEEEEcCChHHHHHH-HHhcchhccCC
Q 032490           98 ANVKENLQAVYFVHPGLQARLFL-ATFGRLFFNGV  131 (139)
Q Consensus        98 ~~~kknLk~lyiVHPt~~~K~~~-~~~~pfi~s~~  131 (139)
                      +.+++||+++|||||++|+|+++ ...+++++++.
T Consensus        79 ~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~  113 (149)
T PF13716_consen   79 RKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKF  113 (149)
T ss_dssp             HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT
T ss_pred             HHHhhceEEEEEECCCHHHHHHHHHHhcccccccc
Confidence            99999999999999999999999 55566666654

>smart00516 SEC14 Domain in homologues of a S

Probab=99.74  E-value=8.9e-18  Score=122.04  Aligned_cols=105  Identities=27%  Similarity=0.420  Sum_probs=92.5

Q ss_pred             ccCCCCCeEEEEEcccCCCcCCCHHHHHHHHHHHhhccc--------CCCCeEEEEEecCcccCcCcccHHHHHHHHHhc
Q 032490           25 GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRL--------GKKAFTVLYVHTGVQRSENFAGISALRSIYDAI   96 (139)
Q Consensus        25 G~D~~GrpVvvi~a~~~p~~~~d~e~ll~y~~~~~ld~~--------~~~~y~lVy~~tg~~~~~n~p~~~wl~~~y~~l   96 (139)
                      |.|++||||+++.+++++.+..+.+.+++|++. ++|..        ..+.+++|++.++. +..+ ++.+|++++++.+
T Consensus        14 g~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~i~D~~~~-~~~~-~~~~~lk~~~~~~   90 (158)
T smart00516       14 GYDKDGRPVLIFRAGRFDLKSVTLEELLRYLVY-VLEKILQREKKTGGIEGFTVIFDLKGL-SMSN-PDLSVLRKILKIL   90 (158)
T ss_pred             CCCCCcCEEEEEeccccccCcCCHHHHHHHHHH-HHHHHHHHHhcCCCeeeEEEEEECCCC-Cccc-ccHHHHHHHHHHH
Confidence            799999999999999998877899999998887 45533        23578999999998 5544 7899999999999


Q ss_pred             ChhhHhccceEEEEcCChHHHHHHHHhcchhccCCC
Q 032490           97 PANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVG  132 (139)
Q Consensus        97 ~~~~kknLk~lyiVHPt~~~K~~~~~~~pfi~s~~~  132 (139)
                      +..|+++|+++|||||+++++++|++++||++.++.
T Consensus        91 ~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~  126 (158)
T smart00516       91 QDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTR  126 (158)
T ss_pred             HHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhh
Confidence            999999999999999999999999999999988754

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>cd00170 SEC14 Sec14p-like lipid-binding domain

Probab=99.68  E-value=1.5e-16  Score=113.55  Aligned_cols=111  Identities=25%  Similarity=0.354  Sum_probs=90.6

Q ss_pred             CcEEEeccCCCCCeEEEEEcccCC-CcCCCHHHHHHHHHHHhhcccCC------CCeEEEEEecCcccCcCcc-cHHHHH
Q 032490           19 EIFKIHGRDKQGRKILRIIGKFFP-ARLLSVEVLKRYLSERVYPRLGK------KAFTVLYVHTGVQRSENFA-GISALR   90 (139)
Q Consensus        19 ~ily~~G~D~~GrpVvvi~a~~~p-~~~~d~e~ll~y~~~~~ld~~~~------~~y~lVy~~tg~~~~~n~p-~~~wl~   90 (139)
                      ++.+.+|.|++||||+++..+... ....+.+.+++|.+. .+|....      +.+++|++.++. +..+.. ..+|++
T Consensus         9 ~~~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~i~D~~~~-~~~~~~~~~~~~k   86 (157)
T cd00170           9 KVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVY-TLEKLLQEDDEQVEGFVVIIDLKGL-SLSHLLPDPSLLK   86 (157)
T ss_pred             cccccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHHH-HHHHHHhhhhhcccceEEEEECCCC-ChhccchhHHHHH
Confidence            566566779999999999998433 345666888888776 4654322      478999999998 555553 789999


Q ss_pred             HHHHhcChhhHhccceEEEEcCChHHHHHHHHhcchhccCC
Q 032490           91 SIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGV  131 (139)
Q Consensus        91 ~~y~~l~~~~kknLk~lyiVHPt~~~K~~~~~~~pfi~s~~  131 (139)
                      ++++.++..|++||+++|||||+++++++|++++||++.+.
T Consensus        87 ~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~  127 (157)
T cd00170          87 KILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKT  127 (157)
T ss_pred             HHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhh
Confidence            99999999999999999999999999999999999988764

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]

Probab=99.47  E-value=2.5e-13  Score=111.51  Aligned_cols=118  Identities=19%  Similarity=0.254  Sum_probs=93.3

Q ss_pred             CChhhhHHHHHhcCcEEEeccCCCCCeEEEEEcccCCCcCCCHHHHHHHHHHHhhcc------cCCCCeEEEEEecCccc
Q 032490            6 VSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPR------LGKKAFTVLYVHTGVQR   79 (139)
Q Consensus         6 i~~~e~~~~i~~~~ily~~G~D~~GrpVvvi~a~~~p~~~~d~e~ll~y~~~~~ld~------~~~~~y~lVy~~tg~~~   79 (139)
                      +...|.-.++ +.|-.|.+|.|++||||+++.++.-..+..+.+.+.++++. +|+.      -+++.++++++.+|+ +
T Consensus        86 ~~~~Ev~~e~-~tGK~yi~G~D~~gRPVl~~~~~~~~qn~~t~~~~~r~~Vy-~mE~Ai~~lp~~qe~~~~L~D~~~f-s  162 (324)
T KOG1470|consen   86 IEADEVAAEL-ETGKAYILGHDKDGRPVLYLRPRPHRQNTKTQKELERLLVY-TLENAILFLPPGQEQFVWLFDLTGF-S  162 (324)
T ss_pred             cCHHHHHHHh-hcCcEEEecccCCCCeEEEEecCCCCCCCCCHHHHHHHHHH-HHHHHHHhCCCCcceEEEEEecccC-c
Confidence            3344433334 34666788999999999999998444444565555555554 3442      367789999999999 5


Q ss_pred             CcCcccHHHHHHHHHhcChhhHhccceEEEEcCChHHHHHHHHhcchh
Q 032490           80 SENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLF  127 (139)
Q Consensus        80 ~~n~p~~~wl~~~y~~l~~~~kknLk~lyiVHPt~~~K~~~~~~~pfi  127 (139)
                      ..| ++++.++.+..+|+..|+++|...+|+||.|++..+|++.+|||
T Consensus       163 ~sN-~d~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpfl  209 (324)
T KOG1470|consen  163 MSN-PDIKFLKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFL  209 (324)
T ss_pred             ccC-CCcHHHHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhcc
Confidence            555 68999999999999999999999999999999999999999998

>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle

Probab=99.42  E-value=2.4e-13  Score=98.69  Aligned_cols=116  Identities=23%  Similarity=0.301  Sum_probs=84.2

Q ss_pred             HHHhcCcEEEeccCCCCCeEEEEEcccCCCcCCCHHHHHHHHHHHhhcc--------cCCCCeEEEEEecCcccCcCccc
Q 032490           14 LIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPR--------LGKKAFTVLYVHTGVQRSENFAG   85 (139)
Q Consensus        14 ~i~~~~ily~~G~D~~GrpVvvi~a~~~p~~~~d~e~ll~y~~~~~ld~--------~~~~~y~lVy~~tg~~~~~n~p~   85 (139)
                      ++.+.+..+..|.|++||||+++-.+++.......+.+.++++. ++|.        ...+.+++|++.+|+ +..+.+.
T Consensus         2 ~~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~-~~E~~~~~~~~~~~~~~~~~iiD~~g~-~~~~~~~   79 (159)
T PF00650_consen    2 EILKSGPFYLHGRDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVY-LLERMLKRMPEGGQVEGIVVIIDLSGF-SLSNFDW   79 (159)
T ss_dssp             HHHTTSCEEEEEE-TTS-EEEEEEGTT--HHTS-HHHHHHHHHH-HHHHHHHTHHHTSHHH-EEEEEE-TT---HHHHHC
T ss_pred             HHHCCeeEEECCCCCCcCEEEEEEcccCCCCcCCHHHHHHHHHH-HHHHHHhhhcccccceeEEEEEeCCCc-eEecccc
Confidence            57788999999999999999999998877655555555555544 2332        123578999999999 5555542


Q ss_pred             --HHHHHHHHHhcChhhHhccceEEEEcCChHHHHHHHHhcchhccCC
Q 032490           86 --ISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGV  131 (139)
Q Consensus        86 --~~wl~~~y~~l~~~~kknLk~lyiVHPt~~~K~~~~~~~pfi~s~~  131 (139)
                        .+.++.+.+.++..|+++++.+||+|++++++++|++++||++.++
T Consensus        80 ~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~  127 (159)
T PF00650_consen   80 WPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKT  127 (159)
T ss_dssp             HHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHH
T ss_pred             chhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhh
Confidence              7888999999999999999999999999999999999999998764

Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....

>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]

Probab=98.64  E-value=1.6e-07  Score=76.06  Aligned_cols=119  Identities=13%  Similarity=0.111  Sum_probs=83.6

Q ss_pred             HHHHHhcCcEEEeccCCCCCeEEEEEcccCCCcC----CC-----------HHHHHHHHHHHhhcc--cCCCCeEEEEEe
Q 032490           12 EELIDRLEIFKIHGRDKQGRKILRIIGKFFPARL----LS-----------VEVLKRYLSERVYPR--LGKKAFTVLYVH   74 (139)
Q Consensus        12 ~~~i~~~~ily~~G~D~~GrpVvvi~a~~~p~~~----~d-----------~e~ll~y~~~~~ld~--~~~~~y~lVy~~   74 (139)
                      ..++.+..-....|.|++|+||++--....-.+.    ..           .++.+..+.....+.  -.....+.|.+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl  167 (317)
T KOG1471|consen   88 DDELLKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDL  167 (317)
T ss_pred             chhhhhhccccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEEC
Confidence            3444443334467999999999997665553221    12           233333332211111  235567889999


Q ss_pred             cCcccCcC--cccHHHHHHHHHhcChhhHhccceEEEEcCChHHHHHHHHhcchhccCC
Q 032490           75 TGVQRSEN--FAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGV  131 (139)
Q Consensus        75 tg~~~~~n--~p~~~wl~~~y~~l~~~~kknLk~lyiVHPt~~~K~~~~~~~pfi~s~~  131 (139)
                      .|. +-.+  .+....++++...++..|+++++++||||..+++.++|++++||+..+.
T Consensus       168 ~G~-~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt  225 (317)
T KOG1471|consen  168 KGV-SLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKT  225 (317)
T ss_pred             CCC-cchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHH
Confidence            998 4443  3778889999999999999999999999999999999999999998654

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=96.12  E-value=0.0024  Score=62.51  Aligned_cols=128  Identities=16%  Similarity=0.060  Sum_probs=101.2

Q ss_pred             CChhhhHHHHHhcCcEEEeccCCCCCeEEEEEcccCCCcCCCHHHHHHHHHHHhhcccCCCCeEEEEEecCcccCcCccc
Q 032490            6 VSESEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAG   85 (139)
Q Consensus         6 i~~~e~~~~i~~~~ily~~G~D~~GrpVvvi~a~~~p~~~~d~e~ll~y~~~~~ld~~~~~~y~lVy~~tg~~~~~n~p~   85 (139)
                      +.+.|+|--++..-+.|+.| .+.|.|+.++++++.--+..+-+ ++.|+..-++.+.+.-++.++.+-|.. ..+++--
T Consensus      1549 lheKe~fitL~~~i~~~~~G-sen~~k~~~lvs~r~fl~~~s~~-il~~l~~L~~kp~~hf~~evreD~T~~-~~d~sfl 1625 (2724)
T KOG1826|consen 1549 LHEKEEFITLAKVIQFYANG-SENGLKNFYLVSRRKFLKECSDD-ILIFLVELCLKPKVHFPGEVREDPTPI-EFDYSFL 1625 (2724)
T ss_pred             HhhhhHHHHHHHHHHHHHhh-hhccCcchhhHhHHHHHhhcCcH-HHHHHHHHHcCccccCcceeeecCCcC-CccHHHH
Confidence            46788999999999999999 99999999999986655555433 444544434677888999999987777 3344444


Q ss_pred             HHHHHH-HHHhcChhhHhccceEEEEcCChHHHHHHHHhcchhccCCCCCccc
Q 032490           86 ISALRS-IYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGVGGSESE  137 (139)
Q Consensus        86 ~~wl~~-~y~~l~~~~kknLk~lyiVHPt~~~K~~~~~~~pfi~s~~~~~~~~  137 (139)
                      .+++.. ++...+.-..+|..++|+++.+.|.|.....--+ |+-+++|++.|
T Consensus      1626 tsf~~~~~f~vr~~va~e~~~a~~di~~n~~lK~~~~l~dr-iL~~L~~~k~~ 1677 (2724)
T KOG1826|consen 1626 TSFLYLKWFKVRPHVANENKHAVGDINCNSFLKETTKLHDR-ILGQLGQPKME 1677 (2724)
T ss_pred             HHHHhhhheeechhhhhhcccccccccchHHHHHHHHHHHH-HHhhcCCCcee
Confidence            555554 6777888899999999999999999999988888 88899999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
3peg_A	290	Neurofibromin; SEC14 domain, pleckstrin homology d	3e-23
3pg7_A	256	Neurofibromin; SEC lipid binding domain, PH domain	9e-22

>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Length = 256

 Score = 86.6 bits (214), Expect = 9e-22
 Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 2/120 (1%)

Query: 10  EQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFT 69
           E+ + +  L IF   G  K G  I   + + F    ++ ++L  ++          K + 
Sbjct: 2   EEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHV-LLTLKPYYAKPYE 60

Query: 70  VLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFN 129
           ++   T    S  F     L   +   P    +N+ AVY  +     R +     RL   
Sbjct: 61  IVVDLTHTGPSNRF-KTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTG 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
3pg7_A	256	Neurofibromin; SEC lipid binding domain, PH domain	100.0
3peg_A	290	Neurofibromin; SEC14 domain, pleckstrin homology d	99.96
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	99.52
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	99.51
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	99.39
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	99.36
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	99.33

>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*

Probab=100.00  E-value=5e-35  Score=232.13  Aligned_cols=118  Identities=19%  Similarity=0.191  Sum_probs=111.0

Q ss_pred             hhhHHHHHhcCcEEEeccCCCCCeEEEEEcccCCCcCCCHHHHHHHHHHHhhcccCCCCeEEEEEecCcccCcCcccHHH
Q 032490            9 SEQEELIDRLEIFKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGKKAFTVLYVHTGVQRSENFAGISA   88 (139)
Q Consensus         9 ~e~~~~i~~~~ily~~G~D~~GrpVvvi~a~~~p~~~~d~e~ll~y~~~~~ld~~~~~~y~lVy~~tg~~~~~n~p~~~w   88 (139)
                      .||++||++++++|++|.|++||||||++||++|+..+|+|.|++|+++ +++++.+++|.+|||||++ +..|.|+.+|
T Consensus         1 ~ed~~~i~~~~ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~-tl~~~~~~~y~lV~d~T~~-~~~n~p~~~w   78 (256)
T 3pg7_A            1 KEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLL-TLKPYYAKPYEIVVDLTHT-GPSNRFKTDF   78 (256)
T ss_dssp             CTTTTTHHHHTSEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHH-HHTTTTTSCEEEEEECTTC-CGGGCCCHHH
T ss_pred             CcchhHHHHcCCEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHH-HHHHhcCCCeEEEEECCCC-CcccCCcHHH
Confidence            4899999999999999999999999999999999988999999999998 6999999999999999999 7899999999


Q ss_pred             HHHHHHhcChhhHhccceEEEEcCChHHHHHHHHhcc-hhc
Q 032490           89 LRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGR-LFF  128 (139)
Q Consensus        89 l~~~y~~l~~~~kknLk~lyiVHPt~~~K~~~~~~~p-fi~  128 (139)
                      |+++|+++|++|+|||+++||||||+|+|.+++.+.+ |++
T Consensus        79 l~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~  119 (256)
T 3pg7_A           79 LSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTG  119 (256)
T ss_dssp             HHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTT
T ss_pred             HHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccc
Confidence            9999999999999999999999999999988776544 443

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*

Probab=99.52  E-value=5.3e-14  Score=109.26  Aligned_cols=114  Identities=8%  Similarity=0.094  Sum_probs=92.6

Q ss_pred             HHhcCcE-EEeccCCCCCeEEEEEcccCCCcCCCHHHHHHHHHHHhhcccCC------CCeEEEEEecCcccCcCc--cc
Q 032490           15 IDRLEIF-KIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGK------KAFTVLYVHTGVQRSENF--AG   85 (139)
Q Consensus        15 i~~~~il-y~~G~D~~GrpVvvi~a~~~p~~~~d~e~ll~y~~~~~ld~~~~------~~y~lVy~~tg~~~~~n~--p~   85 (139)
                      +-+.|.. +..|.|++||||+++-..++.++..+.+.++++.+. +++....      +.+++|++.+|+ +..|.  ++
T Consensus        79 ~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~-~~E~~~~~~~~~~~g~~~I~D~~g~-s~~~~~~~~  156 (262)
T 1r5l_A           79 LLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLI-TSELIVQEVETQRNGIKAIFDLEGW-QFSHAFQIT  156 (262)
T ss_dssp             HHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHH-HHHHHTTSHHHHHHCEEEEEECTTC-CHHHHHHCC
T ss_pred             HHHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHH-HHHHHHhChhhcccceEEEEECCCC-CHHHHhccC
Confidence            3355654 456999999999999998877766777777777765 4554333      358999999999 55553  46


Q ss_pred             HHHHHHHHHhcChhhHhccceEEEEcCChHHHHHHHHhcchhccC
Q 032490           86 ISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNG  130 (139)
Q Consensus        86 ~~wl~~~y~~l~~~~kknLk~lyiVHPt~~~K~~~~~~~pfi~s~  130 (139)
                      .+.++++...++..|+++|+++||||+++++.++|++++||+..+
T Consensus       157 ~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~  201 (262)
T 1r5l_A          157 PSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEK  201 (262)
T ss_dssp             HHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHH
T ss_pred             HHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHH
Confidence            789999999999999999999999999999999999999998754

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*

Probab=99.51  E-value=7.1e-14  Score=112.78  Aligned_cols=120  Identities=13%  Similarity=0.157  Sum_probs=96.8

Q ss_pred             hhHHHHHhcCc-EEEeccCCCCCeEEEEEcccCCCcCCCHHHHHHHHHHHhhcccCC------CCeEEEEEecCcccCcC
Q 032490           10 EQEELIDRLEI-FKIHGRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRLGK------KAFTVLYVHTGVQRSEN   82 (139)
Q Consensus        10 e~~~~i~~~~i-ly~~G~D~~GrpVvvi~a~~~p~~~~d~e~ll~y~~~~~ld~~~~------~~y~lVy~~tg~~~~~n   82 (139)
                      ++..++-+.|. .+..|.|++||||+++-..++.++..+.+.++++++. +++....      +.+++|++.+|+ +..+
T Consensus       133 ~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~-~lE~~l~~~~~~v~g~v~IiD~~g~-sl~~  210 (316)
T 3hx3_A          133 EAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCF-ILEKLLENEETQINGFCIIENFKGF-TMQQ  210 (316)
T ss_dssp             HHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHH-HHHHHTTSHHHHHHCEEEEEECTTC-CHHH
T ss_pred             HHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHH-HHHHHHhcccCCcceEEEEEECCCC-CHHH
Confidence            34444445566 4456999999999999988777766788888888876 5665433      469999999999 5544


Q ss_pred             c--ccHHHHHHHHHhcChhhHhccceEEEEcCChHHHHHHHHhcchhccCC
Q 032490           83 F--AGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGV  131 (139)
Q Consensus        83 ~--p~~~wl~~~y~~l~~~~kknLk~lyiVHPt~~~K~~~~~~~pfi~s~~  131 (139)
                      .  .+.+.++++...++..|+.+|+++||||+++++.++|++++||++.++
T Consensus       211 ~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt  261 (316)
T 3hx3_A          211 AASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKL  261 (316)
T ss_dssp             HHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHH
T ss_pred             hccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHh
Confidence            2  456789999999999999999999999999999999999999987643

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1

Probab=99.39  E-value=6e-13  Score=105.60  Aligned_cols=115  Identities=15%  Similarity=0.055  Sum_probs=89.1

Q ss_pred             HHHhcCcEEEeccCCCCCeEEEEEcccCCCcC----CCHHHHHHHHHHHhhcc--------------cCCCCeEEEEEec
Q 032490           14 LIDRLEIFKIHGRDKQGRKILRIIGKFFPARL----LSVEVLKRYLSERVYPR--------------LGKKAFTVLYVHT   75 (139)
Q Consensus        14 ~i~~~~ily~~G~D~~GrpVvvi~a~~~p~~~----~d~e~ll~y~~~~~ld~--------------~~~~~y~lVy~~t   75 (139)
                      .+.+....+..|.|++||||+++-..++..+.    .+.++++++++. .++.              ...+.+++|++.+
T Consensus        99 ~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~-~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~  177 (296)
T 1aua_A           99 LIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVW-EYESVVQYRLPACSRAAGHLVETSCTIMDLK  177 (296)
T ss_dssp             HHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHH-HHHHHHHTHHHHHHHHHTSCCCCEEEEEECT
T ss_pred             HHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCceeEEEEEECC
Confidence            34444444567999999999999887765432    467777776664 2332              1235689999999


Q ss_pred             CcccCcCccc-HHHHHHHHHhcChhhHhccceEEEEcCChHHHHHHHHhcchhccC
Q 032490           76 GVQRSENFAG-ISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNG  130 (139)
Q Consensus        76 g~~~~~n~p~-~~wl~~~y~~l~~~~kknLk~lyiVHPt~~~K~~~~~~~pfi~s~  130 (139)
                      |+ +..+.+. .++++++...++..|+++|+++||||+.+++.++|++++||+..+
T Consensus       178 g~-s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~  232 (296)
T 1aua_A          178 GI-SISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPV  232 (296)
T ss_dssp             TC-CHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHH
T ss_pred             CC-CHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHh
Confidence            99 5556544 578899999999999999999999999999999999999999753

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=99.36  E-value=1.8e-12  Score=107.04  Aligned_cols=106  Identities=16%  Similarity=0.145  Sum_probs=88.2

Q ss_pred             EeccCCCCCeEEEEEcccCCCc----CCCHHHHHHHHHHHhhccc-------------CCCCeEEEEEecCcccCcCc--
Q 032490           23 IHGRDKQGRKILRIIGKFFPAR----LLSVEVLKRYLSERVYPRL-------------GKKAFTVLYVHTGVQRSENF--   83 (139)
Q Consensus        23 ~~G~D~~GrpVvvi~a~~~p~~----~~d~e~ll~y~~~~~ld~~-------------~~~~y~lVy~~tg~~~~~n~--   83 (139)
                      ..|.|++||||+++...++..+    ..+.+.+++|++. ++|..             ..+.+++|++.+|+ +..+.  
T Consensus        88 ~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~-~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~-sl~~~~~  165 (403)
T 1olm_A           88 MCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMR-ECELLLQECAHQTTKLGRKVETITIIYDCEGL-GLKHLWK  165 (403)
T ss_dssp             EEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHH-HHHHHHHHHHHHHHHHTSCCCCEEEEEECTTC-CGGGGCH
T ss_pred             eeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHH-HHHHHHHHHHhhHHhhCCcccceEEEEECCCC-CHHHHhh
Confidence            4699999999999998877654    3577888888776 45432             13679999999998 55554  


Q ss_pred             ccHHHHHHHHHhcChhhHhccceEEEEcCChHHHHHHHHhcchhccC
Q 032490           84 AGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNG  130 (139)
Q Consensus        84 p~~~wl~~~y~~l~~~~kknLk~lyiVHPt~~~K~~~~~~~pfi~s~  130 (139)
                      |...+++++.+.++..|+++|+++||||+.+++.++|++++||+..+
T Consensus       166 ~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~  212 (403)
T 1olm_A          166 PAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSED  212 (403)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHH
T ss_pred             HHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHh
Confidence            56889999999999999999999999999999999999999999753

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*

Probab=99.33  E-value=2.7e-12  Score=103.91  Aligned_cols=116  Identities=13%  Similarity=0.086  Sum_probs=90.2

Q ss_pred             HHHHhcCcEEEeccCCCCCeEEEEEcccCCCcC----CCHHHHHHHHHHHhhccc--------------CCCCeEEEEEe
Q 032490           13 ELIDRLEIFKIHGRDKQGRKILRIIGKFFPARL----LSVEVLKRYLSERVYPRL--------------GKKAFTVLYVH   74 (139)
Q Consensus        13 ~~i~~~~ily~~G~D~~GrpVvvi~a~~~p~~~----~d~e~ll~y~~~~~ld~~--------------~~~~y~lVy~~   74 (139)
                      ..+.+....+..|.|++||||+++-...+..+.    .+.++++++++. .++.+              ..+..++|++.
T Consensus       113 ~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~-~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~  191 (320)
T 3q8g_A          113 IKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVK-EYELFATYRVPACSRRAGYLIETSCTVLDL  191 (320)
T ss_dssp             HHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHH-HHHHHHHTHHHHHHHHHTSCCCCEEEEEEC
T ss_pred             HHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHH-HHHHHHHHhhhHHHHhcCCCcceeEEEEEC
Confidence            345666667778999999999999988775532    256666666543 22221              23567899999


Q ss_pred             cCcccCcCccc-HHHHHHHHHhcChhhHhccceEEEEcCChHHHHHHHHhcchhccC
Q 032490           75 TGVQRSENFAG-ISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNG  130 (139)
Q Consensus        75 tg~~~~~n~p~-~~wl~~~y~~l~~~~kknLk~lyiVHPt~~~K~~~~~~~pfi~s~  130 (139)
                      +|+ +..+.+. .++++++...++..|+++|+++||||+.++++++|++++||+..+
T Consensus       192 ~g~-sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~  247 (320)
T 3q8g_A          192 KGI-SLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPV  247 (320)
T ss_dssp             TTC-CHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHH
T ss_pred             CCC-CHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHH
Confidence            998 5555543 678999999999999999999999999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d1olma3	199	c.13.1.1 (A:76-274) Supernatant protein factor (SP	6e-04
d1r5la2	185	c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot	0.003
d1auaa2	203	c.13.1.1 (A:97-299) C-terminal domain of phosphati	0.004

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (82), Expect = 6e-04
 Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 17/132 (12%)

Query: 13  ELIDRLEIFKIHGRDKQGRKILRI-IGKFFPARLLSVEVLKRYLSERVY----------- 60
           E+I +     + G D  G  +    IG      LL     +  L  ++            
Sbjct: 3   EVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAH 62

Query: 61  --PRLGKKAFTVLYVH--TGVQRSE-NFAGISALRSIYDAIPANVKENLQAVYFVHPGLQ 115
              +LG+K  T+  ++   G+         + A          N  E L+ ++ V     
Sbjct: 63  QTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKL 122

Query: 116 ARLFLATFGRLF 127
             +         
Sbjct: 123 FPVAYNLIKPFL 134

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (77), Expect = 0.003
 Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 6/118 (5%)

Query: 12  EELIDRLEIFKIHGRDKQGRKILRI-IGKFFPARLLSVEVLKR--YLSERV--YPRLGKK 66
             L+       +  RD  G K+L   I  + P    + +V +     SE +       + 
Sbjct: 3   IGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRN 62

Query: 67  AFTVLYVHTGVQRSE-NFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATF 123
               ++   G Q S       S  + I   +  +    ++ ++ ++  +      +  
Sbjct: 63  GIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMI 120

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.6 bits (76), Expect = 0.004
 Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 17/118 (14%)

Query: 23  IHGRDKQGRKILRI-IGKFFPARLLSVEVLKRYLSERVY----------------PRLGK 65
            H  DK GR +    +G      +  V   +R L   V+                     
Sbjct: 15  YHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLV 74

Query: 66  KAFTVLYVHTGVQRSENFAGISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATF 123
           +    +    G+  S  ++ +S +R           E +   Y ++           F
Sbjct: 75  ETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLF 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1r5la2	185	Alpha-tocopherol transfer protein {Human (Homo sap	99.43
d1olma3	199	Supernatant protein factor (SPF), middle domain {H	99.39
d1auaa2	203	C-terminal domain of phosphatidylinositol transfer	99.38

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.6e-13  Score=99.37  Aligned_cols=113  Identities=8%  Similarity=0.112  Sum_probs=89.5

Q ss_pred             hcCcEEEe-ccCCCCCeEEEEEcccCCCcCCCHHHHHHHHHHHhhccc------CCCCeEEEEEecCcccCcC--cccHH
Q 032490           17 RLEIFKIH-GRDKQGRKILRIIGKFFPARLLSVEVLKRYLSERVYPRL------GKKAFTVLYVHTGVQRSEN--FAGIS   87 (139)
Q Consensus        17 ~~~ily~~-G~D~~GrpVvvi~a~~~p~~~~d~e~ll~y~~~~~ld~~------~~~~y~lVy~~tg~~~~~n--~p~~~   87 (139)
                      +.|.+... |+|++||||+++-++++.++..+.+.++++... +++..      ..+.+++|++.+|+ +..+  .++.+
T Consensus         7 ~~g~~~~lp~rD~~Gr~v~~~r~~~~d~~~~~~~~~~r~~~~-~~e~~~~~~~~~~~g~~~I~D~~g~-s~~~~~~~~~~   84 (185)
T d1r5la2           7 KAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLI-TSELIVQEVETQRNGIKAIFDLEGW-QFSHAFQITPS   84 (185)
T ss_dssp             HTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHH-HHHHHTTSHHHHHHCEEEEEECTTC-CHHHHHHCCHH
T ss_pred             HcCCceecCCCCcCcCEEEEEEcccCCCCCCCHHHHHHHHHH-HHHHHHhccccCCceEEEEEECCCC-CHHHhhhccHH
Confidence            45555443 899999999999999886655666666555544 23332      22358999999998 5554  37889


Q ss_pred             HHHHHHHhcChhhHhccceEEEEcCChHHHHHHHHhcchhccCC
Q 032490           88 ALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGV  131 (139)
Q Consensus        88 wl~~~y~~l~~~~kknLk~lyiVHPt~~~K~~~~~~~pfi~s~~  131 (139)
                      .++++.+.++..|+.+|+++|||||.+|++++|++++||+..++
T Consensus        85 ~~~~~~~~~q~~yP~rl~~i~ivn~P~~~~~~~~~vk~fl~~k~  128 (185)
T d1r5la2          85 VAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKI  128 (185)
T ss_dssp             HHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHH
T ss_pred             HHHHHHHHHHhhCchhhheeEEEcCCHHHHHHHHHHHHhccHHH
Confidence            99999999999999999999999999999999999999987654

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.5e-13  Score=99.99  Aligned_cols=105  Identities=16%  Similarity=0.139  Sum_probs=83.6

Q ss_pred             eccCCCCCeEEEEEcccCCCc----CCCHHHHHHHHHHHhhccc-------------CCCCeEEEEEecCcccCcCc--c
Q 032490           24 HGRDKQGRKILRIIGKFFPAR----LLSVEVLKRYLSERVYPRL-------------GKKAFTVLYVHTGVQRSENF--A   84 (139)
Q Consensus        24 ~G~D~~GrpVvvi~a~~~p~~----~~d~e~ll~y~~~~~ld~~-------------~~~~y~lVy~~tg~~~~~n~--p   84 (139)
                      .|.|++||||+++-..++..+    ....+.++++.+. .++..             .-+..++|++.+|+ +..+.  +
T Consensus        14 ~G~Dk~Grpv~~~r~g~~d~~~l~~~~~~~~~~~~~~~-~~E~~~~~~~~~~~~~~~~v~~~~~I~Dl~g~-s~~~~~~~   91 (199)
T d1olma3          14 CGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMR-ECELLLQECAHQTTKLGRKVETITIIYDCEGL-GLKHLWKP   91 (199)
T ss_dssp             EEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHH-HHHHHHHHHHHHHHHHTSCCCCEEEEEECTTC-CGGGGCHH
T ss_pred             ccCCCCCCEEEEEecccCChHHhhccCCHHHHHHHHHH-HHHHHHHHHHHHHHhcCCccceEEEEEECCCC-chhhhccc
Confidence            599999999999988777543    2456667766554 23321             12568999999997 44333  4


Q ss_pred             cHHHHHHHHHhcChhhHhccceEEEEcCChHHHHHHHHhcchhccC
Q 032490           85 GISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNG  130 (139)
Q Consensus        85 ~~~wl~~~y~~l~~~~kknLk~lyiVHPt~~~K~~~~~~~pfi~s~  130 (139)
                      ..+.++++.+.++..|+++|+++||||+.++++++|++++||+..+
T Consensus        92 ~~~~l~~~~~~~q~~YPerl~~i~iiN~P~~f~~~w~ivk~fl~~~  137 (199)
T d1olma3          92 AVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSED  137 (199)
T ss_dssp             HHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhhheEEECCCHHHHHHHHHHHHhcCHH
Confidence            5799999999999999999999999999999999999999998764

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=2.2e-13  Score=100.90  Aligned_cols=109  Identities=14%  Similarity=0.036  Sum_probs=84.8

Q ss_pred             EEEeccCCCCCeEEEEEcccCCCcC----CCHHHHHHHHHHHhhccc--------------CCCCeEEEEEecCcccCcC
Q 032490           21 FKIHGRDKQGRKILRIIGKFFPARL----LSVEVLKRYLSERVYPRL--------------GKKAFTVLYVHTGVQRSEN   82 (139)
Q Consensus        21 ly~~G~D~~GrpVvvi~a~~~p~~~----~d~e~ll~y~~~~~ld~~--------------~~~~y~lVy~~tg~~~~~n   82 (139)
                      .+..|.|++||||+++-..++..+.    .+.+.++++.+. .++..              ..+.+++|++.+|+ +..+
T Consensus        13 ~~~~G~Dk~GrpV~~~r~g~~~~~~l~~~~~~~~~~~~~~~-~~E~~~~~~~~~~~~~~~~~v~~~i~IiD~~g~-s~~~   90 (203)
T d1auaa2          13 QYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVW-EYESVVQYRLPACSRAAGHLVETSCTIMDLKGI-SISS   90 (203)
T ss_dssp             CEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHH-HHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTC-CHHH
T ss_pred             CcCCCCCCCCCEEEEEECCCCChHHhcccCCHHHHHHHHHH-HHHHHHHHHHHHhhhhccCccceEEEEEECCCC-ChHH
Confidence            3456999999999999887776532    366667666654 24321              12568999999988 4444


Q ss_pred             cc-cHHHHHHHHHhcChhhHhccceEEEEcCChHHHHHHHHhcchhccCC
Q 032490           83 FA-GISALRSIYDAIPANVKENLQAVYFVHPGLQARLFLATFGRLFFNGV  131 (139)
Q Consensus        83 ~p-~~~wl~~~y~~l~~~~kknLk~lyiVHPt~~~K~~~~~~~pfi~s~~  131 (139)
                      .. ....++++.+.++..|+++|+++||||++++++++|++++||++.++
T Consensus        91 ~~~~~~~~k~~~~~~q~~yPe~l~~i~ivN~P~~~~~~~~~vk~fl~~~t  140 (203)
T d1auaa2          91 AYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVT  140 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHH
T ss_pred             hhhHHHHHHHHHHHHHHhChHhhcceEEECCcHHHHHHHHHHHhhcCHHH
Confidence            42 35778899999999999999999999999999999999999987643