Citrus Sinensis ID: 032501

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSISHS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHEEcccEEEEEEccc
Coil and Loop (DISEMBL)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSISHS
Flexible Loop (DISEMBL)
mndadvskqIQQMVRFIRQEAEEKANeisvsaeeefnieklqlveAEKKKIRqeyerkekqveiRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSISHS
Low Complexity Region (SEG)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSISHS
Disordered region (IsUnstruct)
********************************************************************EYSMQLNASRIKVLQA***************VLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSI***
Disordered Region (DISOPRED)
****D*SKQIQQMVRFIRQEAEEKA**********FNIEKLQLVEAEKKKI***************************IKVLQAQDDLVSNMMEAA***********NSYKKLLKGLIVQVSGIKLVFPLFCVFSIS**
Disordered Region (DISEMBL)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSISHS
Disordered Region (DISPRO)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSIS**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNxxxxxxxxxxxxxxxxxxxxxxxxVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSISHS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q9MB46	230	V-type proton ATPase subu	N/A	no	0.863	0.521	1.0	3e-61
Q9SWE7	230	V-type proton ATPase subu	N/A	no	0.863	0.521	0.991	4e-60
O23948	237	V-type proton ATPase subu	N/A	no	0.863	0.506	0.883	1e-52
Q41396	229	V-type proton ATPase subu	N/A	no	0.863	0.524	0.833	2e-50
Q39258	230	V-type proton ATPase subu	yes	no	0.870	0.526	0.809	8e-50
Q40272	226	V-type proton ATPase subu	N/A	no	0.863	0.530	0.841	1e-49
P0CAN7	237	V-type proton ATPase subu	no	no	0.870	0.510	0.763	4e-46
Q9C9Z8	235	V-type proton ATPase subu	no	no	0.863	0.510	0.741	5e-46
Q6PCU2	226	V-type proton ATPase subu	yes	no	0.863	0.530	0.5	6e-26
P50518	226	V-type proton ATPase subu	yes	no	0.863	0.530	0.5	7e-26

>sp|Q9MB46|VATE_CITUN V-type proton ATPase subunit E OS=Citrus unshiu GN=VATE PE=2 SV=1

 Score =  233 bits (593), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Citrus unshiu (taxid: 55188)

>sp|Q9SWE7|VATE_CITLI V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1

 Score =  229 bits (584), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 119/120 (99%), Positives = 119/120 (99%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLK LIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQ 120

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Citrus limon (taxid: 2708)

>sp|O23948|VATE_GOSHI V-type proton ATPase subunit E OS=Gossypium hirsutum GN=VATE PE=2 SV=1

 Score =  204 bits (518), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/120 (88%), Positives = 114/120 (95%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           M+DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE+KEK
Sbjct: 1   MSDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDD+V+ M E+ASK+ LNVS DH+ YK+LLK LIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDVVNAMKESASKDFLNVSHDHHVYKRLLKDLIVQ 120

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Gossypium hirsutum (taxid: 3635)

>sp|Q41396|VATE_SPIOL V-type proton ATPase subunit E OS=Spinacia oleracea GN=VATE PE=2 SV=1

 Score =  196 bits (499), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 100/120 (83%), Positives = 111/120 (92%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MND DV KQIQQMVRFIRQEAEEKANEISV+AEEEFNIEKLQLVEAEKKKIR EYERKEK
Sbjct: 1   MNDTDVQKQIQQMVRFIRQEAEEKANEISVAAEEEFNIEKLQLVEAEKKKIRPEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++R+KIEYSMQLNASRIKVLQAQDDLV++M E A+KE+L VS DH+ YK+LLK L+VQ
Sbjct: 61  QVQVRRKIEYSMQLNASRIKVLQAQDDLVNSMKEEAAKELLRVSGDHHHYKRLLKELVVQ 120

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Spinacia oleracea (taxid: 3562)

>sp|Q39258|VATE1_ARATH V-type proton ATPase subunit E1 OS=Arabidopsis thaliana GN=VHA-E1 PE=1 SV=2

 Score =  195 bits (495), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 98/121 (80%), Positives = 112/121 (92%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MND DVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ+YE+KEK
Sbjct: 1   MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           Q ++RKKI+YSMQLNASRIKVLQAQDD+V+ M + A+K++LNVSRD  +YK+LLK LIVQ
Sbjct: 61  QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQ 120

Query: 121 V 121
            
Sbjct: 121 C 121

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. Required for Golgi organization and vacuole function in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40272|VATE_MESCR V-type proton ATPase subunit E OS=Mesembryanthemum crystallinum GN=VATE PE=2 SV=1

 Score =  194 bits (493), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 101/120 (84%), Positives = 109/120 (90%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MND DV  QIQQMVRF+RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK K
Sbjct: 1   MNDTDVQNQIQQMVRFMRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKAK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++R+KIEYSMQLNASRIKVLQAQDDLV+ M EAASKE+L VS DH+ Y+ LLK LIVQ
Sbjct: 61  QVDVRRKIEYSMQLNASRIKVLQAQDDLVNAMKEAASKELLLVSGDHHQYRNLLKELIVQ 120

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mesembryanthemum crystallinum (taxid: 3544)

>sp|P0CAN7|VATE3_ARATH V-type proton ATPase subunit E3 OS=Arabidopsis thaliana GN=VHA-E3 PE=2 SV=1

 Score =  182 bits (463), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 110/127 (86%), Gaps = 6/127 (4%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDAD S QIQQMVRFIRQEAEEKANEIS+S+EEEFNIEKLQLVEAEKKKIRQEYE+KEK
Sbjct: 1   MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSR------DHNSYKKLL 114
           QV++RKKI+YSMQLNASRIKVLQAQDD+V+ M E A+K++L VS+       H+ YK LL
Sbjct: 61  QVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLL 120

Query: 115 KGLIVQV 121
           K LIVQ 
Sbjct: 121 KDLIVQC 127

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9Z8|VATE2_ARATH V-type proton ATPase subunit E2 OS=Arabidopsis thaliana GN=VHA-E2 PE=2 SV=1

 Score =  182 bits (462), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 89/120 (74%), Positives = 110/120 (91%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEIS+SAEEEFNIE+LQL+E+ K+K+RQ+Y+RK K
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV+IRK+I+YS QLNASRIK LQAQDD+V+ M ++A+K++L VS D N+YKKLLK LI++
Sbjct: 61  QVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIE 120

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6PCU2|VATE1_RAT V-type proton ATPase subunit E 1 OS=Rattus norvegicus GN=Atp6v1e1 PE=1 SV=1

 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 60/120 (50%), Positives = 89/120 (74%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct: 3   LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct: 63  QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Rattus norvegicus (taxid: 10116)

>sp|P50518|VATE1_MOUSE V-type proton ATPase subunit E 1 OS=Mus musculus GN=Atp6v1e1 PE=1 SV=2

 Score =  115 bits (289), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 60/120 (50%), Positives = 89/120 (74%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct: 3   LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct: 63  QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
12585474	230	RecName: Full=V-type proton ATPase subun	0.863	0.521	1.0	2e-59
12585492	230	RecName: Full=V-type proton ATPase subun	0.863	0.521	0.991	3e-58
225426050	230	PREDICTED: V-type proton ATPase subunit	0.863	0.521	0.9	1e-52
255537687	230	vacuolar ATP synthase subunit E, putativ	0.863	0.521	0.891	2e-52
192910830	229	vacuolar ATP synthase subunit E [Elaeis	0.863	0.524	0.9	5e-52
324331819	229	vacuolar ATP synthase subunit [Camellia	0.863	0.524	0.883	1e-51
217075356	214	unknown [Medicago truncatula]	0.863	0.560	0.858	5e-51
357481501	230	V-type proton ATPase subunit E1 [Medicag	0.863	0.521	0.858	6e-51
116781853	229	unknown [Picea sitchensis] gi|116783111|	0.863	0.524	0.858	1e-50
3334405	237	RecName: Full=V-type proton ATPase subun	0.863	0.506	0.883	1e-50

>gi|12585474|sp|Q9MB46.1|VATE_CITUN RecName: Full=V-type proton ATPase subunit E; Short=V-ATPase subunit E; AltName: Full=Vacuolar proton pump subunit E gi|6729085|dbj|BAA89661.1| vacuolar H+-ATPase E subunit-1 [Citrus unshiu]

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12585492|sp|Q9SWE7.1|VATE_CITLI RecName: Full=V-type proton ATPase subunit E; Short=V-ATPase subunit E; AltName: Full=ClVE-1; AltName: Full=Vacuolar proton pump subunit E gi|5733660|gb|AAD49706.1| vacuolar V-H+ATPase subunit E [Citrus limon]

 Score =  229 bits (584), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 119/120 (99%), Positives = 119/120 (99%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLK LIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQ 120

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426050|ref|XP_002274995.1| PREDICTED: V-type proton ATPase subunit E [Vitis vinifera] gi|297742293|emb|CBI34442.3| unnamed protein product [Vitis vinifera]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 108/120 (90%), Positives = 116/120 (96%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV+IRKKIEYSMQLNASRIKVLQAQDDLVS+M EAASKE+L+VS DH+ YK+LL+ L+VQ
Sbjct: 61  QVDIRKKIEYSMQLNASRIKVLQAQDDLVSSMKEAASKELLHVSHDHHVYKRLLRDLVVQ 120

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537687|ref|XP_002509910.1| vacuolar ATP synthase subunit E, putative [Ricinus communis] gi|223549809|gb|EEF51297.1| vacuolar ATP synthase subunit E, putative [Ricinus communis]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 107/120 (89%), Positives = 116/120 (96%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK+RQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKVRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVE+RKKIEYSMQLNASRIKVLQAQDD+V+ M EAA+K++LNVSRDH+ Y+KLLK LIVQ
Sbjct: 61  QVEVRKKIEYSMQLNASRIKVLQAQDDVVNAMKEAATKDLLNVSRDHHVYRKLLKDLIVQ 120

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910830|gb|ACF06523.1| vacuolar ATP synthase subunit E [Elaeis guineensis]

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 108/120 (90%), Positives = 115/120 (95%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEK+KIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKRKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIR+KIEYSMQLNASRIKVLQAQDDLV++M EAASKE+L VS D  +YKKLLKGL+VQ
Sbjct: 61  QVEIRRKIEYSMQLNASRIKVLQAQDDLVNSMKEAASKELLRVSNDSKAYKKLLKGLMVQ 120

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|324331819|gb|ADY38690.1| vacuolar ATP synthase subunit [Camellia sinensis]

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 106/120 (88%), Positives = 116/120 (96%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVE+R+KIEYSMQLNASRIKVLQAQDD+V++M +AA+KE+LNVS DH+ Y+KLLK LIVQ
Sbjct: 61  QVEVRRKIEYSMQLNASRIKVLQAQDDVVNSMKDAAAKELLNVSHDHHVYRKLLKELIVQ 120

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075356|gb|ACJ86038.1| unknown [Medicago truncatula]

 Score =  205 bits (522), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 103/120 (85%), Positives = 115/120 (95%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEA+KKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEADKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++RKKIEYSMQLNASR+KVLQAQDD+V+ M E+A+KE+LNVSRDH+ YK LLK L++Q
Sbjct: 61  QVDVRKKIEYSMQLNASRLKVLQAQDDVVNKMKESAAKELLNVSRDHHVYKNLLKDLVIQ 120

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481501|ref|XP_003611036.1| V-type proton ATPase subunit E1 [Medicago truncatula] gi|217075250|gb|ACJ85985.1| unknown [Medicago truncatula] gi|355512371|gb|AES93994.1| V-type proton ATPase subunit E1 [Medicago truncatula] gi|388507418|gb|AFK41775.1| unknown [Medicago truncatula]

 Score =  205 bits (521), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 103/120 (85%), Positives = 115/120 (95%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEA+KKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEADKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++RKKIEYSMQLNASR+KVLQAQDD+V+ M E+A+KE+LNVSRDH+ YK LLK L++Q
Sbjct: 61  QVDVRKKIEYSMQLNASRLKVLQAQDDVVNKMKESAAKELLNVSRDHHVYKNLLKDLVIQ 120

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116781853|gb|ABK22268.1| unknown [Picea sitchensis] gi|116783111|gb|ABK22797.1| unknown [Picea sitchensis] gi|116786762|gb|ABK24227.1| unknown [Picea sitchensis] gi|224285131|gb|ACN40293.1| unknown [Picea sitchensis] gi|224285269|gb|ACN40360.1| unknown [Picea sitchensis]

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 103/120 (85%), Positives = 114/120 (95%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEI VSAEEEFNIEKLQLVEAEK+KIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEIGVSAEEEFNIEKLQLVEAEKRKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++RKKIEYSMQLNASRIKVLQAQDDLV++M E+A KE+L +S+DH+ YK+LLK LIVQ
Sbjct: 61  QVDVRKKIEYSMQLNASRIKVLQAQDDLVASMKESAGKEILAISQDHHFYKRLLKDLIVQ 120

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3334405|sp|O23948.1|VATE_GOSHI RecName: Full=V-type proton ATPase subunit E; Short=V-ATPase subunit E; AltName: Full=Vacuolar proton pump subunit E gi|2267583|gb|AAB72177.1| vacuolar H+-ATPase subunit E [Gossypium hirsutum]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 106/120 (88%), Positives = 114/120 (95%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           M+DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE+KEK
Sbjct: 1   MSDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDD+V+ M E+ASK+ LNVS DH+ YK+LLK LIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDVVNAMKESASKDFLNVSHDHHVYKRLLKDLIVQ 120

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
TAIR|locus:2136088	230	TUF "AT4G11150" [Arabidopsis t	0.863	0.521	0.816	1.4e-46
TAIR|locus:2024527	237	VHA-E3 "AT1G64200" [Arabidopsi	0.863	0.506	0.769	1e-43
TAIR|locus:2077893	235	VHA-E2 "vacuolar H+-ATPase sub	0.920	0.544	0.713	3.5e-43
ZFIN|ZDB-GENE-020419-11	226	atp6v1e1b "ATPase, H+ transpor	0.863	0.530	0.5	3.1e-28
UNIPROTKB|P11019	226	ATP6V1E1 "V-type proton ATPase	0.863	0.530	0.5	1.7e-27
UNIPROTKB|Q58DR7	202	ATP6V1E1 "ATPase, H+ transport	0.863	0.594	0.5	1.7e-27
UNIPROTKB|E2R1R4	226	ATP6V1E1 "Uncharacterized prot	0.863	0.530	0.5	1.7e-27
UNIPROTKB|P36543	226	ATP6V1E1 "V-type proton ATPase	0.863	0.530	0.5	1.7e-27
UNIPROTKB|Q4R761	226	ATP6V1E1 "V-type proton ATPase	0.863	0.530	0.5	1.7e-27
MGI|MGI:894326	226	Atp6v1e1 "ATPase, H+ transport	0.863	0.530	0.5	1.7e-27

TAIR|locus:2136088 TUF "AT4G11150" [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 98/120 (81%), Positives = 112/120 (93%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             MND DVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ+YE+KEK
Sbjct:     1 MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q ++RKKI+YSMQLNASRIKVLQAQDD+V+ M + A+K++LNVSRD  +YK+LLK LIVQ
Sbjct:    61 QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQ 120

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA;TAS

GO:0009409 "response to cold" evidence=IEP

GO:0005773 "vacuole" evidence=IDA

GO:0007030 "Golgi organization" evidence=RCA;IMP

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009832 "plant-type cell wall biogenesis" evidence=IMP

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2024527 VHA-E3 "AT1G64200" [Arabidopsis thaliana (taxid:3702)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 97/126 (76%), Positives = 110/126 (87%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             MNDAD S QIQQMVRFIRQEAEEKANEIS+S+EEEFNIEKLQLVEAEKKKIRQEYE+KEK
Sbjct:     1 MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRD------HNSYKKLL 114
             QV++RKKI+YSMQLNASRIKVLQAQDD+V+ M E A+K++L VS+       H+ YK LL
Sbjct:    61 QVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLL 120

Query:   115 KGLIVQ 120
             K LIVQ
Sbjct:   121 KDLIVQ 126

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2077893 VHA-E2 "vacuolar H+-ATPase subunit E isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 92/129 (71%), Positives = 115/129 (89%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             MNDADVSKQIQQMVRFIRQEAEEKANEIS+SAEEEFNIE+LQL+E+ K+K+RQ+Y+RK K
Sbjct:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLK 60

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             QV+IRK+I+YS QLNASRIK LQAQDD+V+ M ++A+K++L VS D N+YKKLLK LI++
Sbjct:    61 QVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIE 120

Query:   121 VSGIKLVFP 129
              S ++L  P
Sbjct:   121 -SLLRLKEP 128

GO:0005634 "nucleus" evidence=ISM

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

ZFIN|ZDB-GENE-020419-11 atp6v1e1b "ATPase, H+ transporting, lysosomal, V1 subunit E isoform 1b" [Danio rerio (taxid:7955)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 60/120 (50%), Positives = 91/120 (75%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DD++++++  A + + NV+RD + Y  L+ GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLKARDDMIADLLNDARQRLANVARDPSRYAALMDGLVLQ 122

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IMP

UNIPROTKB|P11019 ATP6V1E1 "V-type proton ATPase subunit E 1" [Bos taurus (taxid:9913)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 60/120 (50%), Positives = 89/120 (74%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

GO:0016324 "apical plasma membrane" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005768 "endosome" evidence=ISS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

UNIPROTKB|Q58DR7 ATP6V1E1 "ATPase, H+ transporting, lysosomal 31kD, V1 subunit E isoform 1" [Bos taurus (taxid:9913)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 60/120 (50%), Positives = 89/120 (74%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

UNIPROTKB|E2R1R4 ATP6V1E1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 60/120 (50%), Positives = 89/120 (74%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

UNIPROTKB|P36543 ATP6V1E1 "V-type proton ATPase subunit E 1" [Homo sapiens (taxid:9606)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 60/120 (50%), Positives = 89/120 (74%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005768 "endosome" evidence=ISS

GO:0005829 "cytosol" evidence=ISS;TAS

GO:0016324 "apical plasma membrane" evidence=ISS

GO:0016469 "proton-transporting two-sector ATPase complex" evidence=TAS

GO:0015992 "proton transport" evidence=TAS

GO:0006879 "cellular iron ion homeostasis" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0033572 "transferrin transport" evidence=TAS

GO:0051701 "interaction with host" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0090382 "phagosome maturation" evidence=TAS

UNIPROTKB|Q4R761 ATP6V1E1 "V-type proton ATPase subunit E 1" [Macaca fascicularis (taxid:9541)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 60/120 (50%), Positives = 89/120 (74%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

GO:0005768 "endosome" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0016324 "apical plasma membrane" evidence=ISS

MGI|MGI:894326 Atp6v1e1 "ATPase, H+ transporting, lysosomal V1 subunit E1" [Mus musculus (taxid:10090)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 60/120 (50%), Positives = 89/120 (74%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005902 "microvillus" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IGI

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IGI

GO:0015992 "proton transport" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q39258	VATE1_ARATH	No assigned EC number	0.8099	0.8705	0.5260	yes	no
Q9SWE7	VATE_CITLI	No assigned EC number	0.9916	0.8633	0.5217	N/A	no
Q9MB46	VATE_CITUN	No assigned EC number	1.0	0.8633	0.5217	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	139
pfam01991	195	pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) su	1e-33
COG1390	194	COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase su	3e-09

>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit

 Score =  115 bits (291), Expect = 1e-33
 Identities = 55/105 (52%), Positives = 73/105 (69%)

Query: 16  FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLN 75
           FIRQEAEEKA EI   AEEEF IEK + VE  +KKI + YE+KEKQ E+ K+I  S   N
Sbjct: 1   FIRQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQIIISNAKN 60

Query: 76  ASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
            +R+KVL A+++L+ ++ E A + + N+S D + YK LLK LI Q
Sbjct: 61  EARLKVLNAREELLDSVFEEAKERLANLSEDKDEYKDLLKDLIKQ 105

This family includes the vacuolar ATP synthase E subunit, as well as the archaebacterial ATP synthase E subunit. Length = 195

>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 28/113 (24%), Positives = 64/113 (56%), Gaps = 2/113 (1%)

Query: 10  IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE 69
           ++++++ I +EAEE+A EI   A EE    K +     ++ I +   + EK+ E  ++  
Sbjct: 4   LEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRI 63

Query: 70  YSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVS 122
            S  L  +R K+L+A+++++ ++ EA  +++ N++ D     + L+ L+++  
Sbjct: 64  ISSALLEARRKLLEAKEEILESVFEAVEEKLRNIASD--PEYESLQELLIEAL 114

Length = 194

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
KOG1664	220	consensus Vacuolar H+-ATPase V1 sector, subunit E	100.0
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	99.75
COG1390	194	NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E	99.68
PRK03963	198	V-type ATP synthase subunit E; Provisional	99.61
PRK01194	185	V-type ATP synthase subunit E; Provisional	99.55
PRK02292	188	V-type ATP synthase subunit E; Provisional	99.3
PRK01558	198	V-type ATP synthase subunit E; Provisional	98.41
PRK01005	207	V-type ATP synthase subunit E; Provisional	98.21
PRK08475	167	F0F1 ATP synthase subunit B; Validated	96.65
TIGR02499	166	HrpE_YscL_not type III secretion apparatus protein	96.37
PF06188	191	HrpE: HrpE/YscL/FliH and V-type ATPase subunit E;	95.53
PRK09098	233	type III secretion system protein HrpB; Validated	94.22
PRK06937	204	type III secretion system protein; Reviewed	91.82
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	90.88
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	89.42
PRK07352	174	F0F1 ATP synthase subunit B; Validated	88.79
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	87.72
CHL00019	184	atpF ATP synthase CF0 B subunit	87.03
COG1317	234	FliH Flagellar biosynthesis/type III secretory pat	86.23
PRK06231	205	F0F1 ATP synthase subunit B; Validated	86.13
PRK03963	198	V-type ATP synthase subunit E; Provisional	85.85
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	84.57
PRK01194	185	V-type ATP synthase subunit E; Provisional	84.16
PRK08404	103	V-type ATP synthase subunit H; Validated	83.3
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	81.75

>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]

Probab=100.00  E-value=1.2e-48  Score=311.41  Aligned_cols=135  Identities=56%  Similarity=0.749  Sum_probs=133.6

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHH
Q 032501            1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK   80 (139)
Q Consensus         1 m~d~ev~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~Rlk   80 (139)
                      |||++|++||+||++||+|||+|||+||.++|+|||||||++||++++.+|+.+|++|+||++++++|+.||.+|++||+
T Consensus         1 lsD~dv~kqi~~M~aFI~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~kkI~~S~~lN~~RlK   80 (220)
T KOG1664|consen    1 LSDADVSKQIKHMVAFIRQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQKKIAKSNLLNQSRLK   80 (220)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeecc
Q 032501           81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSI  136 (139)
Q Consensus        81 vL~ar~~~i~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~  136 (139)
                      +|++|+++|+++|++|+++|..++.|++.|+.+|++||+||| .+|.||.|.|+..
T Consensus        81 vL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~L-l~L~Ep~~Ivrcr  135 (220)
T KOG1664|consen   81 VLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQGL-LQLLEPEVIVRCR  135 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHH-HHhCCCeeEEeeh
Confidence            999999999999999999999999999999999999999999 9999999999875

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.75  E-value=9.3e-17  Score=123.61  Aligned_cols=121  Identities=31%  Similarity=0.358  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Q 032501           16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA   95 (139)
Q Consensus        16 FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~~e   95 (139)
                      ||.+||+.+|++|...|+++++-.+..........+...+++..++++..+....|...+.+|..+|.+|+++|++++++
T Consensus         1 ~I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~   80 (198)
T PF01991_consen    1 EIEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEE   80 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeeccC
Q 032501           96 ASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSIS  137 (139)
Q Consensus        96 a~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~~  137 (139)
                      ++.+|..++++++.|+.+|.+||.+++ ..+.++++.|.++.
T Consensus        81 ~~~~L~~~~~~~~~Y~~~L~~li~~~~-~~~~~~~~~v~~~~  121 (198)
T PF01991_consen   81 VKEKLKSFSKDPDDYKKFLKKLIEEAA-EKLGEGEVIVYVNK  121 (198)
T ss_dssp             HHHHHHCTTCCC-THHHHHHHHHHHHH-HCCTTSCEEEEECC
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHH-HHhcCCceEEeccc
Confidence            999999999998789999999999999 99999999998865

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

Probab=99.68  E-value=5.6e-15  Score=117.45  Aligned_cols=127  Identities=25%  Similarity=0.366  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHH
Q 032501            9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDL   88 (139)
Q Consensus         9 qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~   88 (139)
                      .+..|++||.++|.++|++|...|.++++..+...+......+...+.+.+++++..++...|+..+++|..+|.+++++
T Consensus         3 ~~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~   82 (194)
T COG1390           3 ELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEI   82 (194)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeeccCC
Q 032501           89 VSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSISH  138 (139)
Q Consensus        89 i~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~~~  138 (139)
                      |+.+++.+.++|..++.+|. |.. |..|+.+|+ .++..|++.|.++.+
T Consensus        83 l~~~~~~~~e~L~~i~~~~~-~~~-l~~ll~~~~-~~~~~~~~iV~~~e~  129 (194)
T COG1390          83 LESVFEAVEEKLRNIASDPE-YES-LQELLIEAL-EKLLGGELVVYLNEK  129 (194)
T ss_pred             HHHHHHHHHHHHHcCcCCcc-hHH-HHHHHHHHH-HhcCCCCeEEEeCcc
Confidence            99999999999999999985 444 999999999 999999999998865

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=99.61  E-value=1.1e-13  Score=107.99  Aligned_cols=126  Identities=23%  Similarity=0.215  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Q 032501           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV   89 (139)
Q Consensus        10 i~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i   89 (139)
                      +..++.=|..+|+.++++|-..|..+..-................-++-...++..++...|+..+++|.++|.+|++++
T Consensus         4 l~~i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~   83 (198)
T PRK03963          4 AELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELI   83 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788889999999999999999988777666666666555555667777888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeeccCC
Q 032501           90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSISH  138 (139)
Q Consensus        90 ~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~~~  138 (139)
                      +++|++|.++|..++.+  .|+.+|.+||.+|+ ..|.+++|+|.++.+
T Consensus        84 ~~v~~~a~~~l~~~~~~--~Y~~~l~~li~~a~-~~l~~~~i~i~~~~~  129 (198)
T PRK03963         84 SEVLEAVRERLAELPED--EYFETLKALTKEAV-EELGEDKVVVRSNER  129 (198)
T ss_pred             HHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHH-HHhCCCcEEEEEccc
Confidence            99999999999999877  89999999999999 999999999998764

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=99.55  E-value=6.3e-13  Score=104.46  Aligned_cols=123  Identities=13%  Similarity=0.196  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Q 032501           11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEY-ERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV   89 (139)
Q Consensus        11 ~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~y-ekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i   89 (139)
                      ..++.=|..+|+.+|++|...|+.+.+- =..-...+-.++...| .+..++++..++...|+.-=.+|+++|.+|+++|
T Consensus         4 e~i~~~I~~ea~~~a~~I~~eA~~~aee-i~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~I   82 (185)
T PRK01194          4 EDVIKDIEKSREEKKKEINDEYSKRIEK-LEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREIL   82 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3444455555555555555555554321 1111222223455555 4445567777777778888899999999999999


Q ss_pred             HHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeeccC
Q 032501           90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSIS  137 (139)
Q Consensus        90 ~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~~  137 (139)
                      +++|+.|.++|..+++++ .|+++|.+||.+|+ .. .+|+|.|+++.
T Consensus        83 ~~v~~~a~e~L~~l~~~~-~Y~~~L~~LI~~a~-~~-l~~~~~v~~~~  127 (185)
T PRK01194         83 KDYLDIAYEHLMNITKSK-EYDSILNKMIEVAI-KT-LGEDCIIKVSE  127 (185)
T ss_pred             HHHHHHHHHHHHcccCCc-hHHHHHHHHHHHHH-Hh-cCCCeEEEEcH
Confidence            999999999999999876 89999999999999 88 67898888764

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=99.30  E-value=4.2e-10  Score=87.48  Aligned_cols=118  Identities=21%  Similarity=0.313  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHH-HHHHhhHHHHHHHHHhHhhhHHHHHHHHHH
Q 032501           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK---IRQEY-ERKEKQVEIRKKIEYSMQLNASRIKVLQAQ   85 (139)
Q Consensus        10 i~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~k---I~~~y-ekK~kq~e~~kkI~~S~~~N~~RlkvL~ar   85 (139)
                      +...+.=|.++|+..+++|...|+.+..    .++.....+   |...+ .+-.+....-.....|...|.+|..+|.+|
T Consensus         3 l~~i~~~I~~~a~~e~~~I~~ea~~~~~----~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r   78 (188)
T PRK02292          3 LETVVEDIRDEARARASEIRAEADEEAE----EIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNAR   78 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456667888888888888888877653    344333333   44444 444455566666889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeeccCC
Q 032501           86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSISH  138 (139)
Q Consensus        86 ~~~i~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~~~  138 (139)
                      +.+|+++|+.|+.+|..++.+  .|+.+|.+||.+|     .+++++|+++.+
T Consensus        79 ~~~l~~v~~~a~~kL~~~~~~--~y~~~l~~li~~~-----~~~~~~i~~~~~  124 (188)
T PRK02292         79 KEVLEDVRNQVEDEIASLDGD--KREELTKSLLDAA-----DADGVRVYSRKD  124 (188)
T ss_pred             HHHHHHHHHHHHHHHHhcchh--hHHHHHHHHHHhc-----CCCCeEEEEccc
Confidence            999999999999999999876  8999999999999     468888887654

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=98.41  E-value=6e-05  Score=59.78  Aligned_cols=125  Identities=20%  Similarity=0.180  Sum_probs=100.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHH
Q 032501            3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL   82 (139)
Q Consensus         3 d~ev~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL   82 (139)
                      +.+++.=+.++..=|..+|+.+|.+|-..|+++.    ..|+...+.....-..+-.++++.-+++..|......|-.+|
T Consensus         2 ~~~~~~l~dki~~~~~eeA~~eA~~Ii~eA~~eA----e~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll   77 (198)
T PRK01558          2 QFEVKDLINKIKKDGLEEAERLANEIILEAKEEA----EEIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLI   77 (198)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678888888999999999999999999998875    568888877777778888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeecc
Q 032501           83 QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSI  136 (139)
Q Consensus        83 ~ar~~~i~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~  136 (139)
                      .++..+++.+.+.+...+.... |++.|..++..|+....    ..+++.|.++
T Consensus        78 ~~k~~i~~~~~~~~~~~~~~~~-~~e~~~~li~~ll~~~~----~~~~~~I~~~  126 (198)
T PRK01558         78 SFEKSIKSLFKAALKDEVAEVY-DSNFLRELIIRVVDSWV----KGDKLEIILN  126 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhc----CCCCeeEEEC
Confidence            9999999866555555445444 77899999999988764    3455555444

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=98.21  E-value=0.0002  Score=57.62  Aligned_cols=111  Identities=14%  Similarity=0.164  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHH
Q 032501            4 ADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQ   83 (139)
Q Consensus         4 ~ev~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~   83 (139)
                      +.++.=+.+|..=|..+|+.+|.+|-..|..+-+    .++...+......-+.-.++++..++...|+.--..|-.+|.
T Consensus         8 ~k~q~L~dki~~eiL~eA~~eA~~Il~eAk~~Ae----~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l~   83 (207)
T PRK01005          8 DKLKQICDALREETLKPAEEEAGAIVHNAKEQAK----RIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLES   83 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777888889999999999999999998874    499888888888888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHhhhh
Q 032501           84 AQDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQVS  122 (139)
Q Consensus        84 ar~~~i~~l~~ea~~kL~~~-~~d~~~Y~~lL~~LI~Qgl  122 (139)
                      ++.++++.+|..+.++|..- ..||    ++|..||+.-.
T Consensus        84 aKqevi~~vf~~a~~~lv~~~~~d~----~~l~~lI~~~v  119 (207)
T PRK01005         84 LKQAVENKIFRESLGEWLEHVLTDP----EVSAKLIQALV  119 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHH
Confidence            99999999999999998875 4576    67777776443

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=96.65  E-value=0.083  Score=40.79  Aligned_cols=88  Identities=19%  Similarity=0.248  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHH
Q 032501           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSN   91 (139)
Q Consensus        12 ~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~   91 (139)
                      .=..-+..+|+.+|.+|...|..+-+.++..++.+-+.......++-...++.+           .+--+...|.+++++
T Consensus        77 ~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~E-----------k~~a~~elk~eii~~  145 (167)
T PRK08475         77 EDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFE-----------VRKMEREVVEEVLNE  145 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence            334567788999999999999999998888888877777766665555555444           445578889999999


Q ss_pred             HHHHHHHHHHhhccChhHHHHHHH
Q 032501           92 MMEAASKEVLNVSRDHNSYKKLLK  115 (139)
Q Consensus        92 l~~ea~~kL~~~~~d~~~Y~~lL~  115 (139)
                      +|+.   +|.++  |++.|-.++.
T Consensus       146 ~~~~---~~~~l--~~~~y~~~~~  164 (167)
T PRK08475        146 LFES---KKVSL--NQQEYVNILL  164 (167)
T ss_pred             HHHh---hhcCC--CHHHHHHHHh
Confidence            9998   66655  4557888764

>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family

Probab=96.37  E-value=0.27  Score=36.69  Aligned_cols=108  Identities=16%  Similarity=0.085  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHH-HHHHHHHH
Q 032501           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQA-QDDLVSNM   92 (139)
Q Consensus        14 v~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~a-r~~~i~~l   92 (139)
                      -.=|..+|+.+|+.|...|.++++-.+..-.++....-..++....-......            -+.+.. ..+++ .+
T Consensus        15 A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~~~~~~------------~~~~~~~e~~l~-~l   81 (166)
T TIGR02499        15 AQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAEWQQEA------------EQLEASLEERLA-EL   81 (166)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH-HH
Confidence            44578899999999999999999888777776666555555544333221111            111111 22333 33


Q ss_pred             HHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeeccCC
Q 032501           93 MEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSISH  138 (139)
Q Consensus        93 ~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~~~  138 (139)
                      .-.+-+++..-..    .+.++..++.+++.---..+.|+|+++.+
T Consensus        82 ~~~~~~kil~~~~----~~e~l~~lv~~al~~~~~~~~v~I~v~P~  123 (166)
T TIGR02499        82 VLQALEQILGEYD----EPERLVRLLRQLLRAVANQGRLTLRVHPE  123 (166)
T ss_pred             HHHHHHHHhCCCC----CHHHHHHHHHHHHHhCCCCCceEEEECHH
Confidence            3333333333333    34677777777773333458899988764

This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)

>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []

Probab=95.53  E-value=0.93  Score=35.86  Aligned_cols=109  Identities=18%  Similarity=0.244  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Q 032501           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (139)
Q Consensus        14 v~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~   93 (139)
                      ..=|...|+.+|+.|-..|++++..    ++.+....+.+.|.......        -...-..|-.+...-.+.+..++
T Consensus        32 a~~IL~~A~~qA~~Il~~Ae~eAe~----l~~~a~e~a~~~~~q~a~~l--------l~~~~~~~e~l~~~l~~~~~~ll   99 (191)
T PF06188_consen   32 AREILEDARQQAEQILQQAEEEAEA----LLEQAYEQAEAQFWQQANAL--------LQEWQQQREQLLQQLEEQAEELL   99 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678999999999999999999854    45544555555554332211        11111334556666677888889


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeeccCC
Q 032501           94 EAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSISH  138 (139)
Q Consensus        94 ~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~~~  138 (139)
                      .+|-.+|.+-..++.++..++..|..+-    ..+.+.+|.+.++
T Consensus       100 ~~al~~lL~e~~~~qrv~aLlr~l~~~~----~~~~~~tL~~hP~  140 (191)
T PF06188_consen  100 SQALERLLDETPDQQRVAALLRQLLASQ----RQESEATLRCHPD  140 (191)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHHhc----ccccceEEEECHH
Confidence            9999999888888888998888886543    3667777776543

This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].

>PRK09098 type III secretion system protein HrpB; Validated

Probab=94.22  E-value=2.6  Score=34.45  Aligned_cols=116  Identities=16%  Similarity=0.080  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHH
Q 032501            5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQA   84 (139)
Q Consensus         5 ev~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~a   84 (139)
                      ++-..-+..-.=|..+|++.|++|...|.++|+..+.+=.+....+-..+|..+.-.        .....+..+.+   .
T Consensus        43 ~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~~Gy~eG~~~a~~e~~~~~~~--------~~~~~~~~~~~---~  111 (233)
T PRK09098         43 AVLAAARARAERIVAEARAQAEAILEAARREADRSARRGYAAGLRQALAEWHARGAD--------HAFAERRAARR---M  111 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH---H
Confidence            344455666667888999999999999999998766555555544444333322222        11112222222   4


Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhh--cCcceeeeccCC
Q 032501           85 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKL--VFPLFCVFSISH  138 (139)
Q Consensus        85 r~~~i~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL--~e~~v~v~~~~~  138 (139)
                      ++++++=++.-+++-+...  ||    ..|-..+.+++ -.+  ..+.|+|+++.+
T Consensus       112 e~~Lv~lv~~~v~kiv~~~--d~----~~ll~~v~~al-~~~~~~~~~v~IrV~P~  160 (233)
T PRK09098        112 RERLAEIVAAAVEQIVLGE--DR----AALFARAAQTL-ERVVDGASYLTVRVHPA  160 (233)
T ss_pred             HHHHHHHHHHHHHHHHHhc--CH----HHHHHHHHHHH-HHHhccCCcEEEEECHH
Confidence            7788888888888777643  44    45556777888 554  357899998864

>PRK06937 type III secretion system protein; Reviewed

Probab=91.82  E-value=5.3  Score=31.47  Aligned_cols=106  Identities=15%  Similarity=0.093  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Q 032501           17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA   96 (139)
Q Consensus        17 I~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~~ea   96 (139)
                      |..+|++.|.+|...|+++|+-.+..=.+.....-..++.         .++..+  ..+..--.-....++++=++.-|
T Consensus        35 il~~A~~~A~~i~~~A~~~~e~~~~~Gy~~G~~~a~~e~~---------e~l~~~--~~~~~~~~~~~e~~l~~Lvl~ia  103 (204)
T PRK06937         35 LVEAARQRAEEIEAEAQEVYEQQKQLGYQAGLDEARTEQA---------ELILET--VLQCQEFYRGVEQQMSEVVLEAV  103 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            6678999999999999999976655444444332222221         222222  11122122344556666555555


Q ss_pred             HHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeeccCC
Q 032501           97 SKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSISH  138 (139)
Q Consensus        97 ~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~~~  138 (139)
                      ++=|... .+    +.++..++.+++.---..+.|+|+++++
T Consensus       104 ~kil~~~-~~----~e~i~~lv~~al~~l~~~~~v~I~V~P~  140 (204)
T PRK06937        104 RKILNDY-DD----VERTLQVVREALALVSNQKQVVVRVNPD  140 (204)
T ss_pred             HHHHhcc-Cc----HHHHHHHHHHHHHhcccCCeEEEEECHH
Confidence            5544432 22    4788889999983333458899998764

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=90.88  E-value=7.6  Score=31.51  Aligned_cols=91  Identities=11%  Similarity=0.179  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Q 032501           16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA   95 (139)
Q Consensus        16 FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~~e   95 (139)
                      -...+|+..+.+|...|..+-..++..++.+-+..+....++....++.++.-....+           |.++.+-.+.-
T Consensus        64 ~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l-----------~~ei~~la~~~  132 (246)
T TIGR03321        64 EKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDEL-----------RRRTGAEVFAI  132 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Confidence            3566789999999999999999999999999999998888888888887776665544           44445555555


Q ss_pred             HHHHHHhhccChhHHHHHHHHHH
Q 032501           96 ASKEVLNVSRDHNSYKKLLKGLI  118 (139)
Q Consensus        96 a~~kL~~~~~d~~~Y~~lL~~LI  118 (139)
                      |.+-|.+.. |++..+.++...|
T Consensus       133 A~kil~~~~-d~~~~~~lid~~i  154 (246)
T TIGR03321       133 ARKVLTDLA-DTDLEERMVDVFV  154 (246)
T ss_pred             HHHHHHHhc-ChHHHHHHHHHHH
Confidence            555555443 3334444444444

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=89.42  E-value=11  Score=31.02  Aligned_cols=66  Identities=12%  Similarity=0.198  Sum_probs=51.2

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHH
Q 032501           18 RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQ   83 (139)
Q Consensus        18 ~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~   83 (139)
                      ..+|+.++.+|-..|..+-+-++..++.+-+..+....++....++.++.-....+.++..--.+.
T Consensus        66 l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v~~la~~  131 (250)
T PRK14474         66 QQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQTGQQMVK  131 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457888888999999999999999999999988888888888888888777766554444433333

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=88.79  E-value=9  Score=29.34  Aligned_cols=92  Identities=10%  Similarity=0.139  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Q 032501           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME   94 (139)
Q Consensus        15 ~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~~   94 (139)
                      .-...+|+.+|.+|...|..+-+.++..++.+-...+....+.....++.+++-...           ..|.++.+-.+.
T Consensus        77 ~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~-----------~l~~qi~~la~~  145 (174)
T PRK07352         77 QQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIA-----------QLRREAAELAIA  145 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            345678888889999999988888888888877777777776666666666554433           345566667777


Q ss_pred             HHHHHHHhhccChhHHHHHHHHHH
Q 032501           95 AASKEVLNVSRDHNSYKKLLKGLI  118 (139)
Q Consensus        95 ea~~kL~~~~~d~~~Y~~lL~~LI  118 (139)
                      -|.+-|..-. |++....++..+|
T Consensus       146 ~A~kil~~~l-~~~~~~~li~~~i  168 (174)
T PRK07352        146 KAESQLPGRL-DEDAQQRLIDRSI  168 (174)
T ss_pred             HHHHHHHhHc-CHHHHHHHHHHHH
Confidence            7777776655 4445666666655

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=87.72  E-value=14  Score=30.17  Aligned_cols=124  Identities=15%  Similarity=0.190  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHh--hHHHHHHHHHhH-hhhHHH---H
Q 032501           10 IQQMVRFIRQEAEEKANEISVSA---EEEFNIEKLQLVEAEKKK-IRQEYERKEK--QVEIRKKIEYSM-QLNASR---I   79 (139)
Q Consensus        10 i~~Mv~FI~qEA~EKA~EI~~kA---~Eef~iEK~~lV~~ek~k-I~~~yekK~k--q~e~~kkI~~S~-~~N~~R---l   79 (139)
                      .+.--+-|..+|+..|++|...+   ..++..|..++++..+.. -.+-|..=..  ..+....|+... .+..++   .
T Consensus        49 Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~eGy~eG~~~G~~e~~~~~~~~i~~a~~i~~~a~~~~~  128 (255)
T TIGR03825        49 AEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQEGYEAGFQAGESEALSIYQSTIDEANAIVEEAKDDYE  128 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555556666666666555   355566666666555443 1111111111  111222222221 122332   2


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHhhhhhhhhcC-cceeeeccCC
Q 032501           80 KVLQ-AQDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQVSGIKLVF-PLFCVFSISH  138 (139)
Q Consensus        80 kvL~-ar~~~i~~l~~ea~~kL~~~-~~d~~~Y~~lL~~LI~Qgl~ikL~e-~~v~v~~~~~  138 (139)
                      ..+. .+.++++=.+.-|++=+... ..|+    ..+..||-+++ -.+.. +.|+|+++++
T Consensus       129 ~~l~~~e~el~~La~~iAeKIi~~el~~~~----e~i~~lv~~al-~~l~~~~~i~I~v~p~  185 (255)
T TIGR03825       129 EKIESAQPLIIELACALAEKVIGVSLAEDK----NAFQALVRQVL-SEVREFDEVSIYVHPH  185 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCH----HHHHHHHHHHH-HhccCCCcEEEEECHH
Confidence            2222 34555555565555555543 3454    46788888888 55554 7899988864

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=87.03  E-value=12  Score=28.90  Aligned_cols=92  Identities=17%  Similarity=0.216  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Q 032501           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME   94 (139)
Q Consensus        15 ~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~~   94 (139)
                      .-+..+|+..|.+|...|..+...++..++.+-+..+......-...++.++.-+..           ..|.++.+-.++
T Consensus        82 e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~-----------~l~~ei~~lav~  150 (184)
T CHL00019         82 RARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQRAIN-----------QVRQQVFQLALQ  150 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            347788999999999999999999999999888888887777777777766665543           345566666777


Q ss_pred             HHHHHHHhhccChhHHHHHHHHHH
Q 032501           95 AASKEVLNVSRDHNSYKKLLKGLI  118 (139)
Q Consensus        95 ea~~kL~~~~~d~~~Y~~lL~~LI  118 (139)
                      -|.+-|.+.. |++....++...|
T Consensus       151 ~A~kil~~~l-d~~~~~~lid~~i  173 (184)
T CHL00019        151 RALGTLNSCL-NNELHLRTINANI  173 (184)
T ss_pred             HHHHHHHhHc-CHHHHHHHHHHHH
Confidence            7777777655 5555555555554

>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=86.23  E-value=17  Score=29.68  Aligned_cols=122  Identities=11%  Similarity=0.068  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHhHhhhHHHHH
Q 032501            3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKK--IEYSMQLNASRIK   80 (139)
Q Consensus         3 d~ev~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kk--I~~S~~~N~~Rlk   80 (139)
                      +++....+..+..++...|.+-++.|...+++.|+.-+..=           |+.=.++.....+  =..+++++.....
T Consensus        39 ~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~e~~eeg~q~G-----------~~eG~~~g~~~~~~~e~~~~li~~~~~~  107 (234)
T COG1317          39 EEELEQALEAKEEELESAAQELQEGIEEGAREGYEEGFQLG-----------YEEGFEEGQEEGRVLERLAKLIAEFQAE  107 (234)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677788888899999999999999999999976533322           2222222221111  1223333332222


Q ss_pred             HHH----HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCc-ceeeeccCC
Q 032501           81 VLQ----AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFP-LFCVFSISH  138 (139)
Q Consensus        81 vL~----ar~~~i~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~-~v~v~~~~~  138 (139)
                      +-.    ...++++-++.-|++=+......   -+..|-.+|.++|..-.+.+ .|++++|.+
T Consensus       108 ~~~~~~~~e~qLv~lvl~ia~~Vi~~~~~~---~~~~ll~~v~e~L~~~~~~~~~i~l~VnP~  167 (234)
T COG1317         108 LEALKEVVEKQLVQLVLEIARKVIGKELEL---DPEALLAAVREALEEVPLFAAAITLRVNPD  167 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHhc---CHHHHHHHHHHHHHhccccccCeEEEECHH
Confidence            222    34456666666666655554433   34789999999996666777 899999864

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=86.13  E-value=16  Score=29.18  Aligned_cols=94  Identities=20%  Similarity=0.138  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Q 032501           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (139)
Q Consensus        14 v~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~   93 (139)
                      ..-..++|+.+|.+|...|.++-+.++..++..-+..+...-+.....++.+++-+..           ..|.++.+-..
T Consensus       105 ~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~-----------~Lk~ei~~lAv  173 (205)
T PRK06231        105 AKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKE-----------QLQKESVELAM  173 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Confidence            3456678888888999999988888888888876666665555555555555444322           22344444444


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHHh
Q 032501           94 EAASKEVLNVSRDHNSYKKLLKGLIV  119 (139)
Q Consensus        94 ~ea~~kL~~~~~d~~~Y~~lL~~LI~  119 (139)
                      .-|.+-|.+-. |+...+.++...|-
T Consensus       174 ~iA~kiL~k~l-d~~~~~~lI~~~i~  198 (205)
T PRK06231        174 LAAEELIKKKV-DREDDDKLVDEFIR  198 (205)
T ss_pred             HHHHHHHHhhC-CHHHHHHHHHHHHH
Confidence            44555444433 55567777777663

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=85.85  E-value=14  Score=28.50  Aligned_cols=97  Identities=15%  Similarity=0.221  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhH--------hhhH
Q 032501            5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSM--------QLNA   76 (139)
Q Consensus         5 ev~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~--------~~N~   76 (139)
                      ++-.+.+.=.+=|..+|+.+|++|...|.++.+.+...++...+..+..+-.+....+..+.+.....        +.+.
T Consensus        10 ~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~~   89 (198)
T PRK03963         10 EINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLEA   89 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556677788888888888888888888888888888777777766666655555555544433        3444


Q ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHH
Q 032501           77 SRIKVLQA----QDDLVSNMMEAASKEVL  101 (139)
Q Consensus        77 ~RlkvL~a----r~~~i~~l~~ea~~kL~  101 (139)
                      ++-++.+.    -..+|..++.++-..|.
T Consensus        90 a~~~l~~~~~~~Y~~~l~~li~~a~~~l~  118 (198)
T PRK03963         90 VRERLAELPEDEYFETLKALTKEAVEELG  118 (198)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHhC
Confidence            55444432    23567777777777764

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=84.57  E-value=15  Score=27.70  Aligned_cols=94  Identities=13%  Similarity=0.129  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH
Q 032501           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (139)
Q Consensus        14 v~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~i~~l~   93 (139)
                      ..-...+|+.+|.+|...|..+...++..++..-...+....+.-..+++.++.-....           .|.++.+-.+
T Consensus        65 ~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~-----------L~~~i~~la~  133 (164)
T PRK14473         65 YEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSE-----------LKSQIADLVT  133 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHH
Confidence            34566788888999999999998888888888888888777777777777666555443           3444555555


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHHh
Q 032501           94 EAASKEVLNVSRDHNSYKKLLKGLIV  119 (139)
Q Consensus        94 ~ea~~kL~~~~~d~~~Y~~lL~~LI~  119 (139)
                      .-|.+=|..-. |++.+..++...|-
T Consensus       134 ~~a~kil~~~l-~~~~~~~li~~~i~  158 (164)
T PRK14473        134 LTASRVLGAEL-QARGHDALIAESLA  158 (164)
T ss_pred             HHHHHHHHhHc-CHHHHHHHHHHHHH
Confidence            55555554433 55667777776663

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=84.16  E-value=18  Score=28.29  Aligned_cols=96  Identities=14%  Similarity=0.177  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--------HhhhH
Q 032501            5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYS--------MQLNA   76 (139)
Q Consensus         5 ev~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S--------~~~N~   76 (139)
                      ++.++.++=..-|..+|+.+|++|...|+++.+-.+..+.......+...+++-...+.++.|-..-        ...+.
T Consensus         9 ~I~~ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~I~~v~~~   88 (185)
T PRK01194          9 DIEKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREILKDYLDI   88 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777888999999999999999999999999999999999988888888888888777665432        23444


Q ss_pred             HHHHHH--H---HHHHHHHHHHHHHHHHH
Q 032501           77 SRIKVL--Q---AQDDLVSNMMEAASKEV  100 (139)
Q Consensus        77 ~RlkvL--~---ar~~~i~~l~~ea~~kL  100 (139)
                      ++-++-  .   ...++|..++..+-..|
T Consensus        89 a~e~L~~l~~~~~Y~~~L~~LI~~a~~~l  117 (185)
T PRK01194         89 AYEHLMNITKSKEYDSILNKMIEVAIKTL  117 (185)
T ss_pred             HHHHHHcccCCchHHHHHHHHHHHHHHhc
Confidence            444443  2   34566777777665543

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=83.30  E-value=14  Score=26.42  Aligned_cols=65  Identities=18%  Similarity=0.112  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHH
Q 032501           16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK   80 (139)
Q Consensus        16 FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~Rlk   80 (139)
                      =+..+|+.++.+|-..|..+-+-+...++.+-+......-++-.+.++..+.-..+.+.++..-=
T Consensus        17 ~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L   81 (103)
T PRK08404         17 ERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEEL   81 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667777777777777777777777777777666666666666666666555555544444333

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=81.75  E-value=14  Score=25.22  Aligned_cols=52  Identities=23%  Similarity=0.245  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 032501           11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV   62 (139)
Q Consensus        11 ~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~   62 (139)
                      +.=...|..+|...|+.|...+..+-..+..+++..-+..|..+..+-..++
T Consensus        19 ~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~~e~~~a~~e~   70 (85)
T TIGR02926        19 EEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEG   70 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334556666777777777777777777777777777777666665544443

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
4dl0_J	233	Crystal Structure Of The Heterotrimeric Egchead Per		6e-12
2kz9_A	69	Structure Of E1-69 Of Yeast V-Atpase Length = 69		1e-04

>pdb|4DL0|J Chain J, Crystal Structure Of The Heterotrimeric Egchead Peripheral Stalk Complex Of The Yeast Vacuolar Atpase Length = 233

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 75/124 (60%), Gaps = 1/124 (0%)
Query: 6   VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR 65
           V+ ++ +M  FIR+EAEEKA EI + A++E+ IEK  +V  E   I   ++ K K+  + 
Sbjct: 13  VNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLS 72
Query: 66  KKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIK 125
           ++I  S   N  R+KVL A++  +  + E   +++  ++ + + YK +L+ LIV+ + +K
Sbjct: 73  QQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVE-ALLK 131
Query: 126 LVFP 129
           L+ P
Sbjct: 132 LLEP 135

>pdb|2KZ9|A Chain A, Structure Of E1-69 Of Yeast V-Atpase Length = 69

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 6  VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV 62
          V+ ++ +M  FIR+EAEEKA EI + A++E+ IEK  +V  E   I   ++ K K+ 
Sbjct: 13 VNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKA 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	100.0
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	99.58
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	99.57
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	83.57

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=100.00  E-value=1.1e-38  Score=254.12  Aligned_cols=137  Identities=31%  Similarity=0.522  Sum_probs=134.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHH
Q 032501            1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK   80 (139)
Q Consensus         1 m~d~ev~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~Rlk   80 (139)
                      |||+||++||+||++||++||++||+||..+|++||++||+++|++++.+|+.+|++++++++++++|..|+..|++|++
T Consensus         8 l~~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~   87 (233)
T 4efa_E            8 LTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLK   87 (233)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeeccCC
Q 032501           81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSISH  138 (139)
Q Consensus        81 vL~ar~~~i~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~~~  138 (139)
                      +|.+|+++|+++|++|+++|..+++|+..|+.+|.+||+||+ ..|.+|+|.|+++.+
T Consensus        88 vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal-~~l~e~~v~V~~~~~  144 (233)
T 4efa_E           88 VLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEAL-LKLLEPKAIVKALER  144 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHHCCSEEEEEECTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH-HhcCCCcEEEEecHh
Confidence            999999999999999999999999999999999999999999 999999999998754

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=99.58  E-value=7.5e-16  Score=116.59  Aligned_cols=119  Identities=20%  Similarity=0.280  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHhhhHHHHHHHHH
Q 032501            5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQA   84 (139)
Q Consensus         5 ev~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~~N~~RlkvL~a   84 (139)
                      ++-.+.+.|.+||.+||+++|++|...|.++|+.++.+++++..           ++++..+++..|+..|+.|..++.+
T Consensus        10 ~il~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~-----------~e~~~~~~~~~s~~~~~~r~~~l~~   78 (198)
T 2dm9_A           10 EINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAK-----------TQAELEKQRIIANARLEVRRKRLAI   78 (198)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567889999999999999999999999999999999998884           5567788899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeeccC
Q 032501           85 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSIS  137 (139)
Q Consensus        85 r~~~i~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~~  137 (139)
                      |+++++.++..|.+.|..++  ++.|+.+|.+||.+|+ ..+.++.|.|+++.
T Consensus        79 ~~ev~~~~~~~a~~~l~~l~--~~~y~~~l~~li~e~~-~~~~~~~v~i~v~~  128 (198)
T 2dm9_A           79 QEEIISSVLEEVKRRLETMS--EDEYFESVKALLKEAI-KELNEKKVRVMSNE  128 (198)
T ss_dssp             --CHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHH-HHHTCSEEEEECCH
T ss_pred             HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHH-HHcCCCCEEEEECH
Confidence            99999999999999999954  5589999999999999 88999999999875

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=99.57  E-value=2.7e-13  Score=104.25  Aligned_cols=115  Identities=12%  Similarity=0.105  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHhHhhhHHHHHHHHHHHHH
Q 032501           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK----EKQVEIRKKIEYSMQLNASRIKVLQAQDDL   88 (139)
Q Consensus        13 Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK----~kq~e~~kkI~~S~~~N~~RlkvL~ar~~~   88 (139)
                      ..+-|..||+.+|++|...|+++-    ..++...+.+....++..    .++......+..|+..+++|.++|.+|+++
T Consensus         3 ~~~~l~~eA~~~a~~I~~eA~~~a----~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~el   78 (187)
T 3v6i_A            3 LEAILSQEVEAEIQALLQEAEAKA----EAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEV   78 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666666665553    345555555555554433    344455556789999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceee
Q 032501           89 VSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCV  133 (139)
Q Consensus        89 i~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v  133 (139)
                      ++++|++|+++|..++.| ..|+.+|.+||.||+ ..|.+|.|+|
T Consensus        79 i~~v~~~a~~~L~~~~~~-~~Y~~~L~~Li~ea~-~~l~~~~~vv  121 (187)
T 3v6i_A           79 LEEVRRRVREALEALPQK-PEWPEVVRKLALEAL-EALPGAKALV  121 (187)
T ss_dssp             HHHHHHHHHHHHHHGGGS-TTHHHHHHHHHHHHH-HHCTTCCEEE
T ss_pred             HHHHHHHHHHHHHhhhCC-ccHHHHHHHHHHHHH-HHcCCCCeEE
Confidence            999999999999999998 479999999999999 9999999977

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=83.57  E-value=11  Score=27.78  Aligned_cols=96  Identities=19%  Similarity=0.145  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHh--------hhHHH
Q 032501            7 SKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQ--------LNASR   78 (139)
Q Consensus         7 ~~qi~~Mv~FI~qEA~EKA~EI~~kA~Eef~iEK~~lV~~ek~kI~~~yekK~kq~e~~kkI~~S~~--------~N~~R   78 (139)
                      ..+-+.-.+-|..+|+.+|++|-..|.++-.-.+..............+++....+.++.+......        .+.+|
T Consensus         8 ~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a~   87 (187)
T 3v6i_A            8 SQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRVR   87 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566678899999999999999999999999998888888888888888887777766655443        34444


Q ss_pred             HHHHHH-----HHHHHHHHHHHHHHHHHh
Q 032501           79 IKVLQA-----QDDLVSNMMEAASKEVLN  102 (139)
Q Consensus        79 lkvL~a-----r~~~i~~l~~ea~~kL~~  102 (139)
                      -++...     ..++|..++.++-..|..
T Consensus        88 ~~L~~~~~~~~Y~~~L~~Li~ea~~~l~~  116 (187)
T 3v6i_A           88 EALEALPQKPEWPEVVRKLALEALEALPG  116 (187)
T ss_dssp             HHHHHGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHhhhCCccHHHHHHHHHHHHHHHcCC
Confidence            443322     457888888888776643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d2dm9a1	118	V-type ATP synthase subunit E {Pyrococcus horikosh	98.24

>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.24  E-value=4.4e-07  Score=63.05  Aligned_cols=48  Identities=21%  Similarity=0.297  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHhhccChhHHHHHHHHHHhhhhhhhhcCcceeeeccC
Q 032501           87 DLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQVSGIKLVFPLFCVFSIS  137 (139)
Q Consensus        87 ~~i~~l~~ea~~kL~~~~~d~~~Y~~lL~~LI~Qgl~ikL~e~~v~v~~~~  137 (139)
                      ++|++++++|.++|..++++  .|+.+|++||.||+ ..|.+|+|+|+.+.
T Consensus         1 E~i~~v~~~a~~~l~~~~~~--~Y~~~L~~Li~~a~-~~l~~~ev~v~~~~   48 (118)
T d2dm9a1           1 EIISSVLEEVKRRLETMSED--EYFESVKALLKEAI-KELNEKKVRVMSNE   48 (118)
T ss_dssp             CHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHH-HHHTCSEEEEECCH
T ss_pred             CHHHHHHHHHHHHHHccChh--HHHHHHHHHHHHHH-HHhCCCcEEEEEch
Confidence            47999999999999999754  79999999999999 99999999998764